Psyllid ID: psy3476
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1417 | 2.2.26 [Sep-21-2011] | |||||||
| Q14147 | 1143 | Probable ATP-dependent RN | yes | N/A | 0.343 | 0.426 | 0.543 | 1e-157 | |
| Q9DBV3 | 1145 | Probable ATP-dependent RN | yes | N/A | 0.381 | 0.472 | 0.509 | 1e-155 | |
| Q80VY9 | 698 | Putative ATP-dependent RN | no | N/A | 0.288 | 0.585 | 0.343 | 1e-69 | |
| P43329 | 1300 | ATP-dependent RNA helicas | N/A | N/A | 0.297 | 0.324 | 0.361 | 4e-68 | |
| P34498 | 1131 | Probable pre-mRNA-splicin | no | N/A | 0.293 | 0.367 | 0.347 | 1e-67 | |
| P45018 | 1304 | ATP-dependent RNA helicas | yes | N/A | 0.326 | 0.354 | 0.340 | 1e-67 | |
| Q9H6R0 | 707 | Putative ATP-dependent RN | no | N/A | 0.287 | 0.575 | 0.341 | 2e-67 | |
| A2A4P0 | 1244 | ATP-dependent RNA helicas | no | N/A | 0.289 | 0.329 | 0.363 | 6e-66 | |
| Q14562 | 1220 | ATP-dependent RNA helicas | no | N/A | 0.289 | 0.336 | 0.363 | 7e-66 | |
| Q54F05 | 1160 | ATP-dependent RNA helicas | yes | N/A | 0.290 | 0.354 | 0.354 | 7e-66 |
| >sp|Q14147|DHX34_HUMAN Probable ATP-dependent RNA helicase DHX34 OS=Homo sapiens GN=DHX34 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 556 bits (1434), Expect = e-157, Method: Compositional matrix adjust.
Identities = 271/499 (54%), Positives = 357/499 (71%), Gaps = 12/499 (2%)
Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
L Y+VL++DE+HERHLH DFLLGV++ LL + ++K+ILMSATINI LF +YF+ A +
Sbjct: 270 LPQYEVLIVDEVHERHLHNDFLLGVLQRLLPTRPDLKVILMSATINISLFSSYFSN-APV 328
Query: 377 IKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGI 435
++VPGRL+PI + Y P E +KSEKLDP P++R+L ID KYP ERGD+L+F+SG+
Sbjct: 329 VQVPGRLFPITVVYQPQEAEPTTSKSEKLDPRPFLRVLESIDHKYPPEERGDLLVFLSGM 388
Query: 436 SEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSIT 495
+EIS+++ AAQ Y +Q W+VLPLHS LS+ +QD+VF AP G+RKCI+STNIAETS+T
Sbjct: 389 AEISAVLEAAQTYASHTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTNIAETSVT 448
Query: 496 IDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQ 555
IDGIRFVVDSGKVKEMSYD AK+ LQEFWIS+ASAEQRKGRAGRTGPGVC+RLY+E
Sbjct: 449 IDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCFRLYAESD 508
Query: 556 YSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAID 615
Y A Y PEIRRV++DSL+L + M +GD R FPF+E PP ++E+++ L GA+D
Sbjct: 509 YDAFAPYPVPEIRRVALDSLVLQMKSMSVGDPRTFPFIEPPPPASLETAILYLRDQGALD 568
Query: 616 SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDC 675
S E +T +G L+ LPVD+ +GKML+ GSMF ++ VL++AA LSVQSPFT A P+C
Sbjct: 569 SSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALSVQSPFTRSAQSSPEC 628
Query: 676 ETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGIEEQRFYEVTKLRSQFK 734
AR+ LES+ GDP T+ N + W+ VK +R R S+KWC+RRGIEE R YE+ LR QFK
Sbjct: 629 AAARRPLESDQGDPFTLFNVFNAWVQVKSERSRNSRKWCRRRGIEEHRLYEMANLRRQFK 688
Query: 735 QVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEI 794
++L D GL+ S R + E + L +KR+ E A +RRK+L+
Sbjct: 689 ELLEDHGLLAGAQAAQVG-DSYSRLQQRRERRALHQLKRQHEEGAGRRRKVLRL------ 741
Query: 795 EEEEEEEEGERLESRTGPG 813
+EE++ G E R GP
Sbjct: 742 --QEEQDGGSSDEDRAGPA 758
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Probable ATP-binding RNA helicase. Homo sapiens (taxid: 9606) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3 |
| >sp|Q9DBV3|DHX34_MOUSE Probable ATP-dependent RNA helicase DHX34 OS=Mus musculus GN=Dhx34 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 550 bits (1417), Expect = e-155, Method: Compositional matrix adjust.
Identities = 285/559 (50%), Positives = 382/559 (68%), Gaps = 18/559 (3%)
Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
L Y VL++DE+HERHLH DFLLGV++ LL ++K+ILMSATINI LF +YF+ A +
Sbjct: 272 LPQYQVLIVDEVHERHLHNDFLLGVLQRLLPQRPDLKVILMSATINISLFSSYFSH-APV 330
Query: 377 IKVPGRLYPIQLEYHPIVELDRT--KSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSG 434
++VPGRL+PI + Y P E D+T KSEKLDP P++R+L ID KYP ERGD+L+F+SG
Sbjct: 331 VQVPGRLFPITVVYQP-QEADQTASKSEKLDPRPFLRVLEAIDNKYPPEERGDLLVFLSG 389
Query: 435 ISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSI 494
++EI++++ AAQ Y +Q W+VLPLHS LS+ +QD+VF AP G+RKCI+STNIAETS+
Sbjct: 390 MAEITTVLDAAQAYASLTQRWVVLPLHSALSVSDQDKVFDVAPAGVRKCILSTNIAETSV 449
Query: 495 TIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEE 554
TIDGIRFVVDSGKVKEMSYD AK+ LQEFWIS+ASAEQRKGRAGRTGPGVCYRLY+E
Sbjct: 450 TIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCYRLYAES 509
Query: 555 QYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAI 614
Y A Y PEIRRV++D+L+L + M +GD R FPF+E PP ++E+++ L + GA+
Sbjct: 510 DYDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPPASVETAILYLQEQGAL 569
Query: 615 DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPD 674
DS E +T +G L+ LPVD+ +GKML+ GSMF + VL++AA LSVQSPFT A + D
Sbjct: 570 DSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALSVQSPFTRSAQSNLD 629
Query: 675 CETARKELESNHGDPLTVLNAYKEWLGVKKDRV-RSKKWCKRRGIEEQRFYEVTKLRSQF 733
C TAR+ LES+ GDP T+ N + W+ VK +R S+KWC+RRG+EE R YE+ LR QF
Sbjct: 630 CATARRPLESDQGDPFTLFNVFNAWVQVKSERSGNSRKWCRRRGVEEHRLYEMANLRRQF 689
Query: 734 KQVLGDSGLIT--DIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK--AD 789
K++L D GL++ + P S S R + E + L +KR+ E +RRK+L+ D
Sbjct: 690 KELLEDHGLLSGAQVVAPGDSYS---RLQQRRERRALHQLKRQHEEGGGRRRKVLRLQED 746
Query: 790 NAYEIEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVC 849
EE+ + +R +S V ++L + A S ++ R D L L +
Sbjct: 747 GCSSDEEDRKGSTSQRADSVDIQDVKFKLRHNLEQLQAAASSAQDLTR---DQLALLKLV 803
Query: 850 MGLGDVRKFPFLEAPPAEN 868
+G G +P L P A N
Sbjct: 804 LGRG---LYPQLAVPDAFN 819
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Probable ATP-binding RNA helicase. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q80VY9|DHX33_MOUSE Putative ATP-dependent RNA helicase DHX33 OS=Mus musculus GN=Dhx33 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 266 bits (679), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 152/443 (34%), Positives = 259/443 (58%), Gaps = 34/443 (7%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
E +D+ L Y ++LDE HER +H D L GV+K E+ K+I+MSAT++++
Sbjct: 169 EAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKTAQKRRKELGKLPLKVIVMSATMDVD 228
Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
LF YFNR A ++ + GR +PIQ+ Y TK + D Y+ ++S+ I ++
Sbjct: 229 LFSQYFNR-APVLYLEGRQHPIQIFY--------TKQPQQD---YLHAALVSVFQIHQEA 276
Query: 421 PRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
P ++ D+L+F++G EI ++ + A+ + +VLPL+++L +Q RVF A
Sbjct: 277 PASQ--DILVFLTGQEEIEAMSKTCRDIARHLPDGCPSMLVLPLYASLPYSQQLRVFQGA 334
Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
P+G RK I+STNIAETSITI GI++VVD+G VK Y+ + + L +SK A QR
Sbjct: 335 PKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRT 394
Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
GRAGR G+CYRLY+E+++ + + PEI+R ++ S++L L+ M + +V F F+ P
Sbjct: 395 GRAGREDSGICYRLYTEDEFEKFEKMTVPEIQRCNLASVILQLLAMKVPNVLTFDFMSKP 454
Query: 597 PAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
++IE+++ L GA++ K+ +T +GR ++ P++ K ++ S FH + +L
Sbjct: 455 SPDHIEAAIAQLDLLGALEHKDDQLTLTPIGRKMAAFPLEPRFAKTILLSSKFHCTEEIL 514
Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWC 713
++ ++LSV S N R + ++ RK+ S+ GD +T+LN Y+ + + + K WC
Sbjct: 515 TIVSLLSVDSVLYNPPARRDEVQSVRKKFISSEGDHITLLNIYRTFKNIGGN----KDWC 570
Query: 714 KRRGIEEQRFYEVTKLRSQFKQV 736
K + + V ++R+Q +++
Sbjct: 571 KENFVNSKNMLLVAEVRAQLREI 593
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Stimulates RNA polymerase I transcription of the 47S precursor rRNA. Associates with ribosomal DNA (rDNA) loci where it is involved in POLR1A recruitment. Important element of nucleolar organization. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|P43329|HRPA_ECOLI ATP-dependent RNA helicase HrpA OS=Escherichia coli (strain K12) GN=hrpA PE=3 SV=3 | Back alignment and function description |
|---|
Score = 261 bits (666), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 160/443 (36%), Positives = 246/443 (55%), Gaps = 21/443 (4%)
Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
E+ D L YD +++DE HER L+ DFLLG +K LL ++KII+ SATI+ E F
Sbjct: 180 AEIQQDRLLMQYDTIIIDEAHERSLNIDFLLGYLKELLPRRPDLKIIITSATIDPERFSR 239
Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
+FN A II+V GR YP+++ Y PIVE D T+ ++L I +D+ + GD
Sbjct: 240 HFNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LSQESHGD 292
Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
+LIFMSG EI A + N + +LPL++ LS EQ+RVF R+ +++T
Sbjct: 293 ILIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLAT 348
Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
N+AETS+T+ GI++V+D G + Y K+ L IS+ASA QRKGR GR G+C
Sbjct: 349 NVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 408
Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
RLYSE+ + E++ PEI R ++ S++L + +GLGD+ FPF+EAP NI+ VR
Sbjct: 409 IRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRL 468
Query: 608 LTQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
L + GAI + E ++T LGR LS LPVD L +M++ + + + + LS+Q
Sbjct: 469 LEELGAITTDEQASAYKLTPLGRQLSQLPVDPRLARMVLEAQKHGCVREAMIITSALSIQ 528
Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS---KKWCKRRGIE 719
P + + + D L +N + +LG ++ + S ++ C+ +
Sbjct: 529 DPRERPMDKQQASDEKHRRFHDKESDFLAFVNLWN-YLGEQQKALSSNAFRRLCRTDYLN 587
Query: 720 EQRFYEVTKLRSQFKQVLGDSGL 742
R E + +Q +QV+ + G+
Sbjct: 588 YLRVREWQDIYTQLRQVVKELGI 610
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Not yet known. Escherichia coli (strain K12) (taxid: 83333) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|P34498|MOG1_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1 OS=Caenorhabditis elegans GN=mog-1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 259 bits (662), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 151/434 (34%), Positives = 247/434 (56%), Gaps = 18/434 (4%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
E D L Y +++DE HER L+ D L G+++ ++ A++K+I+ SAT++ + F +
Sbjct: 545 ECLGDGSLDQYSAIIMDEAHERSLNTDVLFGLLREVIAKRADLKLIVTSATMDADKFADF 604
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
F +PGR +P++L +H RT E + ++I + GD+L
Sbjct: 605 FGGNCPTFTIPGRTFPVEL-FHA-----RTPVEDYVDAAVKQAVTI----HLGGMDGDIL 654
Query: 430 IFMSGISEISSIVRAAQEYN---EKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
IFM G +I +E +++ VLP++S L + Q ++F AP G+RK IV+
Sbjct: 655 IFMPGQEDIECTCEMIKEKLGELDEAPPLAVLPIYSQLPSDLQAKIFQRAPGGMRKAIVA 714
Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
TNIAETS+T+DGI FV+D G K Y+ M L F +S+ASA QR GRAGRTGPG
Sbjct: 715 TNIAETSLTVDGILFVIDPGFCKMKVYNPRIGMDALSIFPVSQASANQRTGRAGRTGPGQ 774
Query: 547 CYRLYSEEQYS-LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 605
CYRLY+E Q+ L + + PEI+R ++ +++L L +G+ D+ KF F++APP +N+ +S+
Sbjct: 775 CYRLYTERQFKDELLKSTVPEIQRTNLANVVLLLKSLGVDDLLKFHFMDAPPQDNMLNSM 834
Query: 606 RSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPF 665
L GA+D+ ++T +GR + + P+D L KML+ + D VL++ ++LSV + F
Sbjct: 835 YQLWTLGALDNTGQLTPMGRKMVEFPLDPTLSKMLIMSAEMGCSDEVLTIVSMLSVPAIF 894
Query: 666 TNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYE 725
R+ + + +++ + D LT LN Y +W K S KWC + + +
Sbjct: 895 FRPKGREEEADAKKEKFQVPESDHLTFLNVYIQWRTHKY----SAKWCADNYLHVKALKK 950
Query: 726 VTKLRSQFKQVLGD 739
V ++R+Q K+++ D
Sbjct: 951 VREVRAQLKEIMQD 964
|
Probable ATP-binding RNA helicase involved in pre-mRNA splicing. Caenorhabditis elegans (taxid: 6239) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|P45018|HRPA_HAEIN ATP-dependent RNA helicase HrpA homolog OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=hrpA PE=3 SV=2 | Back alignment and function description |
|---|
Score = 259 bits (661), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 168/494 (34%), Positives = 266/494 (53%), Gaps = 32/494 (6%)
Query: 309 VEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLL-HSTAEVKIILMSATINIELFH 367
E+ D FL+ Y L++DE HER L+ DF+LG +K LL ++K+I+ SATI++E F
Sbjct: 186 AEIQNDRFLNQYSCLIIDEAHERSLNNDFILGYLKQLLPRRRRDLKLIITSATIDVERFS 245
Query: 368 TYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
+FN A II+V GR YP+++ Y P+VE D D IL+ +D+ RGD
Sbjct: 246 KHFNN-APIIEVSGRTYPVEVRYRPVVEED-------DQDQLQGILNAVDELQAEG-RGD 296
Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
+LIFM+G EI A Q+ N K +LPL + LS +EQ+++FH P GL + +++T
Sbjct: 297 ILIFMNGEREIRDTAEALQKQNLKHTE--ILPLFARLSAQEQNKIFH--PSGLNRIVLAT 352
Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
N+AETS+T+ I++V+D G + Y K+ L IS+ASA QRKGR GR G+C
Sbjct: 353 NVAETSLTVPSIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGIC 412
Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
RLYSEE ++ E++ PEI R ++ S++L + +GL D+ FPF++AP +I+ V+
Sbjct: 413 IRLYSEEDFNSRPEFTDPEILRTNLASVILQMTALGLDDIEAFPFVDAPDERHIQDGVKL 472
Query: 608 LTQHGAIDS-------KERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLS 660
L + GA ++ K +T +GR L+ LPVD L KM++ F + ++ + + LS
Sbjct: 473 LEELGAFETVQTKSGEKRLLTRVGRQLAQLPVDPRLAKMILSAVNFGCVYEMMIIVSALS 532
Query: 661 VQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKRRGI 718
+Q P + + + D L LN ++ +K+ ++ ++ C++ +
Sbjct: 533 IQDPRERPQEKQQASDEKHRRFADKKSDFLAFLNLWRYLQEQQKESSKNQFRRQCQKDFL 592
Query: 719 EEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEE 778
R E + Q + + + L I A AL G LL I K+AE
Sbjct: 593 NYLRIREWQDIYHQIRLTVREMSL--PINSEKAEYQQIHTALLSG---LLSHIGLKEAE- 646
Query: 779 APKRRKMLKADNAY 792
+++ L A NA+
Sbjct: 647 ---KQQYLGARNAH 657
|
Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q9H6R0|DHX33_HUMAN Putative ATP-dependent RNA helicase DHX33 OS=Homo sapiens GN=DHX33 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 259 bits (661), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 152/445 (34%), Positives = 256/445 (57%), Gaps = 38/445 (8%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-----KIILMSATINIE 364
E +D+ L Y ++LDE HER +H D L GV+K E+ K+I+MSAT++++
Sbjct: 178 EAISDSLLRKYSCVILDEAHERTIHTDVLFGVVKAAQKRRKELGKLPLKVIVMSATMDVD 237
Query: 365 LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR--ILSI--IDKKY 420
LF YFN A ++ + GR +PIQ+ Y TK + D Y+ ++S+ I ++
Sbjct: 238 LFSQYFNG-APVLYLEGRQHPIQVFY--------TKQPQND---YLHAALVSVFQIHQEA 285
Query: 421 PRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA 476
P ++ D+L+F++G EI ++ + A+ + +VLPL+++L +Q RVF A
Sbjct: 286 PSSQ--DILVFLTGQEEIEAMSKTCRDIAKHLPDGCPAMLVLPLYASLPYAQQLRVFQGA 343
Query: 477 PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536
P+G RK I+STNIAETSITI GI++VVD+G VK Y+ + + L +SK A QR
Sbjct: 344 PKGYRKVIISTNIAETSITITGIKYVVDTGMVKAKKYNPDSGLEVLAVQRVSKTQAWQRT 403
Query: 537 GRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
GRAGR G+CYRLY+E+++ + + PEI+R ++ S++L L+ M + +V F F+ P
Sbjct: 404 GRAGREDSGICYRLYTEDEFEKFDKMTVPEIQRCNLASVMLQLLAMKVPNVLTFDFMSKP 463
Query: 597 PAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVL 653
++I++++ L GA++ K+ +T +GR ++ P++ K ++ FH + +L
Sbjct: 464 SPDHIQAAIAQLDLLGALEHKDDQLTLTPMGRKMAAFPLEPKFAKTILMSPKFHCTEEIL 523
Query: 654 SLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEW--LGVKKDRVRSKK 711
++ ++LSV S N R + + RK+ S+ GD +T+LN Y+ + LG KD
Sbjct: 524 TIVSLLSVDSVLHNPPSRREEVQGVRKKFISSEGDHMTLLNIYRTFKNLGGNKD------ 577
Query: 712 WCKRRGIEEQRFYEVTKLRSQFKQV 736
WCK + + V ++R+Q + +
Sbjct: 578 WCKENFVNSKNMTLVAEVRAQLRDI 602
|
Stimulates RNA polymerase I transcription of the 47S precursor rRNA. Associates with ribosomal DNA (rDNA) loci where it is involved in POLR1A recruitment. Important element of nucleolar organization. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|A2A4P0|DHX8_MOUSE ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 253 bits (647), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
E D L+ Y +++LDE HER +H D L G++K + ++K+I+ SAT++ F Y
Sbjct: 693 ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 752
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
F A I +PGR YP+++ Y E D LD I ++ I + P GD+L
Sbjct: 753 FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 801
Query: 430 IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
+F++G EI + E KS G I+LP++S L E Q R+F AP G RK +
Sbjct: 802 VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 860
Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
++TNIAETS+TIDGI +VVD G VK+ Y+ + L IS+A A+QR GRAGRTGP
Sbjct: 861 IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 920
Query: 545 GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
G CYRLY+E Y + + PEI+R ++ S +LSL MG+ D+ F F++APP E + +
Sbjct: 921 GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 980
Query: 604 SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
++ L GA+D + +T LGR +++ P++ L KML+ + +L++ ++LSVQ+
Sbjct: 981 AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1040
Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
F + + + + GD LT+L Y W K+ S WC I+ +
Sbjct: 1041 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1096
Query: 724 YEVTKLRSQFKQVLG 738
+R KQ+LG
Sbjct: 1097 RRAQDIR---KQMLG 1108
|
Facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q14562|DHX8_HUMAN ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 253 bits (647), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 158/435 (36%), Positives = 239/435 (54%), Gaps = 25/435 (5%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
E D L+ Y +++LDE HER +H D L G++K + ++K+I+ SAT++ F Y
Sbjct: 669 ECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRQDMKLIVTSATLDAVKFSQY 728
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
F A I +PGR YP+++ Y E D LD I ++ I + P GD+L
Sbjct: 729 FYE-APIFTIPGRTYPVEILYTKEPETDY-----LD-ASLITVMQIHLTEPP----GDIL 777
Query: 430 IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
+F++G EI + E KS G I+LP++S L E Q R+F AP G RK +
Sbjct: 778 VFLTGQEEIDTACEILYE-RMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVV 836
Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
++TNIAETS+TIDGI +VVD G VK+ Y+ + L IS+A A+QR GRAGRTGP
Sbjct: 837 IATNIAETSLTIDGIYYVVDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGP 896
Query: 545 GVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
G CYRLY+E Y + + PEI+R ++ S +LSL MG+ D+ F F++APP E + +
Sbjct: 897 GKCYRLYTERAYRDEMLTTNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLIT 956
Query: 604 SVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
++ L GA+D + +T LGR +++ P++ L KML+ + +L++ ++LSVQ+
Sbjct: 957 AMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQN 1016
Query: 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRF 723
F + + + + GD LT+L Y W K+ S WC I+ +
Sbjct: 1017 VFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW----KNNKFSNPWCYENFIQARSL 1072
Query: 724 YEVTKLRSQFKQVLG 738
+R KQ+LG
Sbjct: 1073 RRAQDIR---KQMLG 1084
|
Facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q54F05|DHX8_DICDI ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 253 bits (646), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 154/435 (35%), Positives = 241/435 (55%), Gaps = 24/435 (5%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
E D LS+Y V++LDE HER + D L G++K L E+K+++ SAT+ E F Y
Sbjct: 612 ECLLDPNLSAYSVIILDEAHERTISTDVLFGLLKQALQRRPELKVLITSATLEAEKFSKY 671
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
F A++ +PGR +P+ + Y E D LD I ++ I + P GD+L
Sbjct: 672 FMN-AQLFIIPGRTFPVDIRYTKDPEADY-----LD-ASLITVMQIHLSEPP----GDIL 720
Query: 430 IFMSGISEISSIVRAAQEYNEKSQG-----WIVLPLHSTLSLEEQDRVFHYAPEGLRKCI 484
+F++G EI + + E KS G I+LP++S L E Q ++F AP G RK +
Sbjct: 721 LFLTGQEEIDAACQILYE-RMKSLGSNVPDLIILPVYSALPSEMQTKIFEPAPPGSRKVV 779
Query: 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544
++TNIAETS+TIDGI +V+D G K+ ++ M +L IS+A+A QR GRAGRTGP
Sbjct: 780 IATNIAETSLTIDGIYYVIDPGFSKQKCFNPKNGMDSLVVAPISQAAARQRSGRAGRTGP 839
Query: 545 GVCYRLYSEEQYS--LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIE 602
G CYRLY+E + +LA S PEI+R ++ + +L++ MG+ D+ F F++ PP + +
Sbjct: 840 GKCYRLYTESAFKNEMLAS-SIPEIQRTNLGNTVLTMKAMGINDLLNFDFMDPPPVQTLV 898
Query: 603 SSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
S++ L GA+D + +T LGR +++ P+D L KML+ D +L++ A+LSVQ
Sbjct: 899 SAMEQLYSLGALDEEGLLTRLGRKMAEFPLDPQLSKMLIASVDLGCSDEILTVVAMLSVQ 958
Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQR 722
+ F + + + + GD LT+LN Y+ W K+ S WC ++ +
Sbjct: 959 NVFYRPKEKQALADQKKAKFFQPEGDHLTLLNVYESW----KNSKFSNPWCFENFVQARS 1014
Query: 723 FYEVTKLRSQFKQVL 737
+R Q ++
Sbjct: 1015 LRRAQDVRKQLITIM 1029
|
Facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome. Dictyostelium discoideum (taxid: 44689) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1417 | ||||||
| 383852639 | 1137 | PREDICTED: probable ATP-dependent RNA he | 0.350 | 0.437 | 0.604 | 0.0 | |
| 307210533 | 1163 | Probable ATP-dependent RNA helicase DHX3 | 0.348 | 0.424 | 0.603 | 0.0 | |
| 328702328 | 1120 | PREDICTED: probable ATP-dependent RNA he | 0.347 | 0.439 | 0.618 | 0.0 | |
| 340714789 | 1141 | PREDICTED: LOW QUALITY PROTEIN: probable | 0.341 | 0.424 | 0.616 | 0.0 | |
| 350415039 | 1159 | PREDICTED: probable ATP-dependent RNA he | 0.341 | 0.417 | 0.614 | 0.0 | |
| 322802023 | 1220 | hypothetical protein SINV_16346 [Solenop | 0.348 | 0.404 | 0.595 | 0.0 | |
| 345488108 | 1252 | PREDICTED: probable ATP-dependent RNA he | 0.337 | 0.381 | 0.638 | 0.0 | |
| 380016694 | 1117 | PREDICTED: LOW QUALITY PROTEIN: probable | 0.341 | 0.433 | 0.620 | 0.0 | |
| 328793704 | 1138 | PREDICTED: probable ATP-dependent RNA he | 0.341 | 0.425 | 0.622 | 0.0 | |
| 157117593 | 1246 | ATP-dependent RNA helicase [Aedes aegypt | 0.345 | 0.392 | 0.577 | 1e-176 |
| >gi|383852639|ref|XP_003701834.1| PREDICTED: probable ATP-dependent RNA helicase DHX34-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 676 bits (1743), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 307/508 (60%), Positives = 418/508 (82%), Gaps = 11/508 (2%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
+++ ++ L YDV+VLDE+HERHLHGDFLLG++KC+++ ++K++LMSATINIELF Y
Sbjct: 262 QLSGESNLLPYDVIVLDEVHERHLHGDFLLGIMKCIINQKHDLKLVLMSATINIELFSNY 321
Query: 370 FNR-IAKIIKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
F + KII+VPGRLYPIQL Y PI +E R K+++ +P PYI+I+ +ID+KYP E+GD
Sbjct: 322 FAKEDVKIIQVPGRLYPIQLTYRPITIEDFRYKNDRFNPSPYIQIMQMIDQKYPADEKGD 381
Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
+LIF+SG+SEI+++V AA+EY++K W+VLPLHSTL++ EQD+VF YAPEG RKCIVST
Sbjct: 382 LLIFLSGMSEITAVVDAAKEYSQKKNNWVVLPLHSTLAISEQDKVFDYAPEGARKCIVST 441
Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
NIAETSITIDGIRFV DSGKVKEMSYD + KM L+EFWISKASAEQRKGRAGRTGPGVC
Sbjct: 442 NIAETSITIDGIRFVCDSGKVKEMSYDPSCKMQRLKEFWISKASAEQRKGRAGRTGPGVC 501
Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
YRLYSEE+Y L +YSTPE++RV +DSLLL ++ MGL D RKFPF+E PP+E+IE+S+ S
Sbjct: 502 YRLYSEEEYMALEKYSTPELQRVPLDSLLLQMIAMGLPDARKFPFIEPPPSESIENSILS 561
Query: 608 LTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTN 667
L +HGA+ E++T +G+ L+ LPVDI +GKML+ GS+FHQ++ VLSLAA LS+Q+PFTN
Sbjct: 562 LKEHGALTDNEKITCIGKTLARLPVDITIGKMLIMGSVFHQVEPVLSLAAALSIQTPFTN 621
Query: 668 RAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVR--------SKKWCKRRGIE 719
RA+RD +CET+RK+LES+HGDP+T+LNA++EWL VK+ + S+KWCKRRG+E
Sbjct: 622 RAYRDSECETSRKKLESDHGDPITLLNAFREWLEVKQQNSQESRGTGTSSRKWCKRRGLE 681
Query: 720 EQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEA 779
EQRFYE+ KLR+QFK++L D L+ ++P P++S+SS ERA+RHGE+KLL+++KR +
Sbjct: 682 EQRFYEMIKLRAQFKELLQDCNLLKNLPEPNSSMSSAERAIRHGELKLLKSLKRTYKQSE 741
Query: 780 PKRRKMLKADNAYEIEEEEEEEEGERLE 807
P++RK LK + +++I+ E+ + + + ++
Sbjct: 742 PRKRKQLKLE-SFDIQLEDNDNDDKEID 768
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307210533|gb|EFN87023.1| Probable ATP-dependent RNA helicase DHX34 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/507 (60%), Positives = 415/507 (81%), Gaps = 13/507 (2%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
+V+ ++ +S YDV+VLDE+HERHLHGD LLG++KC+++ +K++LMSATINIELF+ Y
Sbjct: 284 QVSGESAVSVYDVVVLDEVHERHLHGDLLLGIMKCIIYQNPNLKLVLMSATINIELFNNY 343
Query: 370 FNR-IAKIIKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
F + K I+VPGRLYPIQL Y P+ +E + K+++ +P PY++IL IID+KYP E+GD
Sbjct: 344 FAKEDVKTIEVPGRLYPIQLMYRPVTIEDMKYKNDRFNPSPYVQILQIIDQKYPSDEKGD 403
Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
+LIF+SG++EI+++V AA+EY++K WI+LPLHSTLS+ EQD+VF Y PEG+RKCIV+T
Sbjct: 404 LLIFLSGMNEITTVVDAAKEYSKKKNNWIILPLHSTLSIAEQDKVFDYVPEGVRKCIVAT 463
Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
NIAETSITIDGIRFV DSGKVKEMSYD + KM L+EFWISKASAEQRKGRAGRTGPGVC
Sbjct: 464 NIAETSITIDGIRFVADSGKVKEMSYDPSCKMQRLKEFWISKASAEQRKGRAGRTGPGVC 523
Query: 548 YR-LYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 606
YR +YSEE+Y +L +YSTPE++RVS+DS L ++ MGL D RKFPF+E PPA +IE+++
Sbjct: 524 YRQIYSEEEYKILEKYSTPELQRVSLDSSALQMIAMGLPDARKFPFIEPPPANSIENAIL 583
Query: 607 SLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFT 666
SL HGA+ E++T +G+ L+ LPVDI +GKML+ GS+FH+++ VLSLAA LS+Q+PFT
Sbjct: 584 SLKDHGALTDNEKITCIGKTLARLPVDITIGKMLIMGSIFHEVEPVLSLAAALSIQTPFT 643
Query: 667 NRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVR--------SKKWCKRRGI 718
NRA+RD +CET+RK+LES+HGDP+T+LNA+KEWL VK++ + S+KWC+RRG+
Sbjct: 644 NRAYRDTECETSRKKLESDHGDPITLLNAFKEWLEVKQENSQEYRSSGNSSRKWCRRRGL 703
Query: 719 EEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEE 778
EEQRFYE+TKLRSQFK++L D L+ IP P++S++S ERA+RHGE+KLL+++KR +
Sbjct: 704 EEQRFYEMTKLRSQFKELLQDCNLLKGIPEPNSSMTSAERAIRHGELKLLKSLKRNYKQN 763
Query: 779 APKRRKMLKADNAYEIE-EEEEEEEGE 804
P++RK LK D +EI+ E+ +E+ GE
Sbjct: 764 EPRKRKQLKID-TFEIQLEDNDEDNGE 789
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328702328|ref|XP_001950822.2| PREDICTED: probable ATP-dependent RNA helicase DHX34-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 669 bits (1726), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/498 (61%), Positives = 408/498 (81%), Gaps = 6/498 (1%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
+V ++ LS YDV+VLDEIHERHLHGDFLLGV+KCLLH ++VK++LMSATIN++LF Y
Sbjct: 260 QVCGEDLLSQYDVIVLDEIHERHLHGDFLLGVMKCLLHQRSDVKLVLMSATINVDLFSKY 319
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRT---KSEKLDPGPYIRILSIIDKKYPRTERG 426
F+ +AK+I+VPGRLYPI+LEYHPI+ + KSE+ DP P+I+I+ +IDKKYP+ ERG
Sbjct: 320 FSPLAKLIQVPGRLYPIKLEYHPIISEMKVLGKKSERFDPSPFIKIMQMIDKKYPKHERG 379
Query: 427 DVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
DVL+F+SG++EI+++V AA+ Y EK+ WI+LPLHS++SL EQD+VF YAPEG RKCIVS
Sbjct: 380 DVLMFLSGMAEITAVVDAARIYCEKNDTWIILPLHSSMSLGEQDKVFDYAPEGTRKCIVS 439
Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
TNIAETSITIDGIRFV+DSGKVKEMSYD T+K+ L+EFW+SKASA+QRKGRAGRTGPGV
Sbjct: 440 TNIAETSITIDGIRFVIDSGKVKEMSYDSTSKVQRLKEFWVSKASADQRKGRAGRTGPGV 499
Query: 547 CYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 606
CYRLYSE+++ +A+YSTPE+++V +D+LLL +V MGL + R FPF+E P ENIE+++
Sbjct: 500 CYRLYSEDEFDAMADYSTPELQKVPLDALLLQMVAMGLPNARLFPFIEPPQPENIENAIE 559
Query: 607 SLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFT 666
SL QHGA+ +ER+T +G LS LPVDIPLGKML+ GS+F Q++ VLSLA VLSVQ+PFT
Sbjct: 560 SLKQHGALTKEERLTPIGNMLSRLPVDIPLGKMLIMGSLFDQLEPVLSLACVLSVQTPFT 619
Query: 667 NRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKD--RVRSKKWCKRRGIEEQRFY 724
N+A++DP+CE AR +LES+HGDP+ +LNA+K+WL +K D +++WCKRRG EEQRFY
Sbjct: 620 NKAYKDPECERARMDLESDHGDPIILLNAFKQWLELKSDGQNTNTRQWCKRRGFEEQRFY 679
Query: 725 EVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRK 784
E+TKLR QFK +L + GL+ + ++S ERALRHGE+KLL+ +K+ EE ++RK
Sbjct: 680 EMTKLRRQFKDLLDECGLVKNEEKNMDDMTSAERALRHGELKLLRGMKKTHKEEDSRKRK 739
Query: 785 MLKADNAYEIEEEEEEEE 802
+LK D +EIE+ + E+
Sbjct: 740 VLKKD-MWEIEDNLDAED 756
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340714789|ref|XP_003395906.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DHX34-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 669 bits (1725), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 306/496 (61%), Positives = 412/496 (83%), Gaps = 12/496 (2%)
Query: 320 YDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNR-IAKIIK 378
YDV+VLDE+HERHLHGDFLLG++KC+++ ++K++LMSATINIELF+ YF++ K+I+
Sbjct: 277 YDVIVLDEVHERHLHGDFLLGIMKCIINQRQDLKLVLMSATINIELFNNYFSKENVKVIQ 336
Query: 379 VPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISE 437
VPGRLYPIQL Y P+ +E R K+++ +P PYI+I+ IID+KYP E+GD+LIF+SG+SE
Sbjct: 337 VPGRLYPIQLLYRPVTIEDIRYKNDRFNPSPYIQIMQIIDQKYPAEEKGDLLIFLSGMSE 396
Query: 438 ISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITID 497
I+++V AA+EY++K WI+L LHSTL++ EQD+VF +APEG+RKCIVSTNIAETSITID
Sbjct: 397 ITAVVDAAKEYSQKKNNWIILALHSTLAISEQDKVFDFAPEGVRKCIVSTNIAETSITID 456
Query: 498 GIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS 557
GIRFV DSGKVKEMSYD + KM L+EFWISKASAEQRKGRAGRTGPGVCYRLYSEE+Y
Sbjct: 457 GIRFVADSGKVKEMSYDPSCKMQRLKEFWISKASAEQRKGRAGRTGPGVCYRLYSEEEYM 516
Query: 558 LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSK 617
L +YSTPE++RV +DSLLL ++ MGL D RKFPF+E P ENIE+S+ SL +HGA+
Sbjct: 517 SLEKYSTPELQRVPLDSLLLQMIAMGLPDARKFPFIEPPSPENIENSILSLKEHGALTDN 576
Query: 618 ERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCET 677
E++T +G+ L+ LPVDI +GKML+ GS+FHQ++ VLSLAA LS+Q+PFTNRA+RD +CET
Sbjct: 577 EKITCIGKTLARLPVDITIGKMLIMGSIFHQVEPVLSLAAALSIQTPFTNRAYRDSECET 636
Query: 678 ARKELESNHGDPLTVLNAYKEWLGVKKDRVR--------SKKWCKRRGIEEQRFYEVTKL 729
+RK+LES+HGDP+T+LNA++EWL VK+ + S+KWCKRRG+EEQRFYE+TKL
Sbjct: 637 SRKKLESDHGDPITLLNAFREWLEVKQQSSQESRGSGNSSRKWCKRRGLEEQRFYEMTKL 696
Query: 730 RSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKAD 789
R+QFK++L D L+ +P P++S+SS ERA+RHGE+KLL+++KR + P++RK LK +
Sbjct: 697 RAQFKELLQDCKLLRSLPEPNSSMSSAERAIRHGELKLLKSLKRTYKQSEPRKRKQLKLE 756
Query: 790 NAYEIE-EEEEEEEGE 804
+++I+ E+ + ++GE
Sbjct: 757 -SFDIQLEDNDHDDGE 771
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350415039|ref|XP_003490513.1| PREDICTED: probable ATP-dependent RNA helicase DHX34-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 668 bits (1724), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 305/496 (61%), Positives = 412/496 (83%), Gaps = 12/496 (2%)
Query: 320 YDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNR-IAKIIK 378
YDV+VLDE+HERHLHGDFLLG++KC+++ ++K++LMSATINIELF+ YF++ K+I+
Sbjct: 295 YDVIVLDEVHERHLHGDFLLGIMKCIINQRQDLKLVLMSATINIELFNNYFSKENVKVIQ 354
Query: 379 VPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISE 437
VPGRLYPIQL Y P+ +E R K+++ +P PYI+I+ +ID+KYP E+GD+LIF+SG+SE
Sbjct: 355 VPGRLYPIQLLYRPVTIEDIRYKNDRFNPSPYIQIMQMIDQKYPAEEKGDLLIFLSGMSE 414
Query: 438 ISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITID 497
I+++V AA+EY++K WI+L LHSTL++ EQD+VF +APEG+RKCIVSTNIAETSITID
Sbjct: 415 ITAVVDAAKEYSQKKNNWIILALHSTLAISEQDKVFDFAPEGVRKCIVSTNIAETSITID 474
Query: 498 GIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS 557
GIRFV DSGKVKEMSYD + KM L+EFWISKASAEQRKGRAGRTGPGVCYRLYSEE+Y
Sbjct: 475 GIRFVADSGKVKEMSYDPSCKMQRLKEFWISKASAEQRKGRAGRTGPGVCYRLYSEEEYM 534
Query: 558 LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSK 617
L +YSTPE++RV +DSLLL ++ MGL D RKFPF+E P ENIE+S+ SL +HGA+
Sbjct: 535 SLEKYSTPELQRVPLDSLLLQMIAMGLPDARKFPFIEPPSPENIENSILSLKEHGALTDN 594
Query: 618 ERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCET 677
E++T +G+ L+ LPVDI +GKML+ GS+FHQ++ VLSLAA LS+Q+PFTNRA+RD +CET
Sbjct: 595 EKITCIGKTLARLPVDITIGKMLIMGSIFHQVEPVLSLAAALSIQTPFTNRAYRDSECET 654
Query: 678 ARKELESNHGDPLTVLNAYKEWLGVKKDRVR--------SKKWCKRRGIEEQRFYEVTKL 729
+RK+LES+HGDP+T+LNA++EWL VK+ + S+KWCKRRG+EEQRFYE+TKL
Sbjct: 655 SRKKLESDHGDPITLLNAFREWLEVKQQSSQESRGSGNSSRKWCKRRGLEEQRFYEMTKL 714
Query: 730 RSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKAD 789
R+QFK++L D L+ +P P++S+SS ERA+RHGE+KLL+++KR + P++RK LK +
Sbjct: 715 RAQFKELLQDCKLLRSLPEPNSSMSSAERAIRHGELKLLKSLKRTYKQSEPRKRKQLKLE 774
Query: 790 NAYEIE-EEEEEEEGE 804
+++I+ E+ + ++GE
Sbjct: 775 -SFDIQLEDNDHDDGE 789
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322802023|gb|EFZ22560.1| hypothetical protein SINV_16346 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 665 bits (1715), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/517 (59%), Positives = 416/517 (80%), Gaps = 23/517 (4%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
+V+ ++ LS+YDV+VLDEIHERHLHGDFL+G++KC+++ ++K++LMSATINIELF Y
Sbjct: 332 QVSGESTLSAYDVIVLDEIHERHLHGDFLMGIMKCIIYQQPDLKLVLMSATINIELFSNY 391
Query: 370 FNR-IAKIIKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
F + KI++VPGRLYPIQL Y P+ VE K+++ +P PY++I+ +ID+KYP E+GD
Sbjct: 392 FAKENVKIVEVPGRLYPIQLLYRPVTVEDLGYKNDRFNPSPYVQIMQMIDQKYPADEKGD 451
Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
+LIF+SGISEI+++V AA+E++ K WIVLPLHSTLS+ +QD+VF YAP+G+RKCIV+T
Sbjct: 452 LLIFLSGISEITAVVDAAKEFSTKKNNWIVLPLHSTLSITDQDKVFDYAPDGIRKCIVAT 511
Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
NIAETSITIDGIRFV DSGKVKEMSYD + KM L+EFWISKASAEQRKGRAGRTGPGVC
Sbjct: 512 NIAETSITIDGIRFVADSGKVKEMSYDPSCKMQRLKEFWISKASAEQRKGRAGRTGPGVC 571
Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
YR+YSEE+Y L +YSTPE++RV +DS LL ++ MGL D RKFPF+E+PPA +IE+++ S
Sbjct: 572 YRIYSEEEYKTLEKYSTPELQRVPLDSSLLQMIAMGLPDARKFPFIESPPANSIENAILS 631
Query: 608 LTQH-----------GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLA 656
L H GA+ E++T +G+ L+ LPVDI +GKML+ GS+FHQ++ VLSLA
Sbjct: 632 LKDHVGYYYRDVCVYGALTDNEKITCIGKTLARLPVDITIGKMLIMGSIFHQVEPVLSLA 691
Query: 657 AVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-------- 708
A LS+Q+PFTNRA+RD +CET+RK+LES+HGDP+T+LNA+KEWL VK++ +
Sbjct: 692 AALSIQTPFTNRAYRDTECETSRKKLESDHGDPITLLNAFKEWLEVKQENAQEYRSNNNS 751
Query: 709 SKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLL 768
S+KWC+RRG+EEQRFYE+TKLR+QFK +L D L+ +P P++S++S ERA+RHGE+KLL
Sbjct: 752 SRKWCRRRGLEEQRFYEMTKLRTQFKDLLQDCNLLKSLPEPNSSMTSAERAIRHGELKLL 811
Query: 769 QAIKRKKAEEAPKRRKMLKADNAYEIE-EEEEEEEGE 804
+++KR + PKRRK LK + +EI+ E+++E GE
Sbjct: 812 KSLKRTYKQNEPKRRKQLKVE-TFEIQFEDDDENNGE 847
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345488108|ref|XP_001604407.2| PREDICTED: probable ATP-dependent RNA helicase DHX34-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/493 (63%), Positives = 401/493 (81%), Gaps = 15/493 (3%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
+V+ + LS YDV+VLDE+HERHLHGDFLLG++KCL+H ++K++LMSATINIELF Y
Sbjct: 378 QVSGEAELSQYDVVVLDEVHERHLHGDFLLGIMKCLIHQRRDLKLVLMSATINIELFSNY 437
Query: 370 F-NRIAKIIKVPGRLYPIQLEYHPIVELDR-TKSEKLDPGPYIRILSIIDKKYPRTERGD 427
F N ++I+VPGRLYPIQL Y P++ D+ +KSE+ +P PYI+I+ IIDKKYP+ ERGD
Sbjct: 438 FANEDVRVIQVPGRLYPIQLIYKPVLIEDKYSKSERFNPSPYIQIMQIIDKKYPKNERGD 497
Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
+LIF+SGISEI+++V AA+EY++K WIVLPLHSTLS+ +QD+VF YAPEG+RKCIVST
Sbjct: 498 LLIFLSGISEITAVVEAAKEYSQKENNWIVLPLHSTLSIADQDKVFGYAPEGVRKCIVST 557
Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
NIAETSITIDGIRFV DSGKVKEMS+D KM L+EFWISKASAEQRKGRAGRTGPGVC
Sbjct: 558 NIAETSITIDGIRFVADSGKVKEMSFDPICKMQKLKEFWISKASAEQRKGRAGRTGPGVC 617
Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
YRLYS + YS +YSTPE++RV +DS LL ++ MGL D RKFPF+E PPAE+IE+S+ S
Sbjct: 618 YRLYSGDDYSAFEKYSTPELQRVPLDSSLLQMIAMGLPDPRKFPFIEPPPAESIENSILS 677
Query: 608 LTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTN 667
L +HGA+ E++T++G+ L+ LPVDI +GKML+ GS+FHQ++ VLSLAA LSVQSPFTN
Sbjct: 678 LKEHGALTENEKLTNIGKTLARLPVDITIGKMLIMGSLFHQVEPVLSLAAALSVQSPFTN 737
Query: 668 RAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVK---KDRVR-----SKKWCKRRGIE 719
RA+RD DCET+RK LES+HGDP+T+LNAYKEWL +K VR SKKWCKRRG+E
Sbjct: 738 RAYRDLDCETSRKNLESDHGDPITLLNAYKEWLEIKHANSAEVRSGSSTSKKWCKRRGLE 797
Query: 720 EQRFYEVTKLRSQFKQVLGDSGLI--TDIPGPDASLSSRERALRHGEIKLLQAIKRKKAE 777
EQRFYE+TKLR+QFK +L D L+ +D+ ++ +SS ER +RHGE+KLL+++KR +
Sbjct: 798 EQRFYEMTKLRTQFKDLLEDCKLLHTSDV---NSEMSSSERIIRHGELKLLRSLKRSYKQ 854
Query: 778 EAPKRRKMLKADN 790
+RK LK D+
Sbjct: 855 NDTNKRKKLKIDD 867
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380016694|ref|XP_003692310.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DHX34-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 662 bits (1708), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/496 (62%), Positives = 407/496 (82%), Gaps = 12/496 (2%)
Query: 320 YDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNR-IAKIIK 378
YDV+VLDE+HERHLHGDFLLG++KC+++ ++K+ILMSATINIELF YF + KII+
Sbjct: 252 YDVIVLDEVHERHLHGDFLLGIMKCIINQRFDLKLILMSATINIELFSDYFAKENVKIIQ 311
Query: 379 VPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISE 437
VPGRLYPIQL Y PI +E R K+++ +P PYI+I+ +ID+KY E+GD+LIF+SG+SE
Sbjct: 312 VPGRLYPIQLLYKPITIEDIRYKNDRFNPSPYIQIMQMIDQKYSADEKGDLLIFLSGMSE 371
Query: 438 ISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITID 497
IS++V AA+EY+ K WI+LPLHSTL++ EQD+VF YAPEG+RKCIVSTNIAETSITID
Sbjct: 372 ISTVVDAAKEYSXKKNNWIILPLHSTLAISEQDKVFDYAPEGIRKCIVSTNIAETSITID 431
Query: 498 GIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS 557
GIRFV DSGKVKEMSY+ + KM L+EFWISKASAEQRKGRAGRTGPGVCYRLYSE +Y
Sbjct: 432 GIRFVADSGKVKEMSYNPSCKMQQLKEFWISKASAEQRKGRAGRTGPGVCYRLYSETEYL 491
Query: 558 LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSK 617
L +YSTPE++RV +DSLLL ++ MGL D RKFPF+E P E+IE+S+ SL +HGA+
Sbjct: 492 NLEKYSTPELQRVPLDSLLLQMIAMGLPDARKFPFIEPPSPESIENSIISLKEHGALTDN 551
Query: 618 ERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCET 677
E++T +GR L+ LPVDI +GKML+ GS+FHQ++ VLSLAA LS+Q+PFTN+A+RD +CE
Sbjct: 552 EKITCIGRTLARLPVDITIGKMLIMGSIFHQVEPVLSLAAALSIQTPFTNKAYRDSECEI 611
Query: 678 ARKELESNHGDPLTVLNAYKEWLGVKKD--------RVRSKKWCKRRGIEEQRFYEVTKL 729
+RK+LES+HGDP+T+LNA++EWL +K+ R S+KWCKRRG+EEQRFYE+TKL
Sbjct: 612 SRKKLESDHGDPITLLNAFREWLEIKQQNSQESRSTRNNSRKWCKRRGLEEQRFYEMTKL 671
Query: 730 RSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKAD 789
R+QFK++L D GL+ + P++S+SS ERALRHGE+KLL+++KR + P++RK LK +
Sbjct: 672 RAQFKELLQDCGLLKNFSEPNSSMSSAERALRHGELKLLKSLKRIYKQNEPRKRKQLKLE 731
Query: 790 NAYEIE-EEEEEEEGE 804
+++I+ E+ + E+GE
Sbjct: 732 -SFDIQLEDNDHEDGE 746
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328793704|ref|XP_397034.4| PREDICTED: probable ATP-dependent RNA helicase DHX34-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 656 bits (1692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/496 (62%), Positives = 408/496 (82%), Gaps = 12/496 (2%)
Query: 320 YDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNR-IAKIIK 378
YDV+VLDE+HERHLHGDFLLG++KC+++ ++K+ILMSATINIELF YF + KII+
Sbjct: 274 YDVIVLDEVHERHLHGDFLLGIMKCIINQRYDLKLILMSATINIELFSDYFAKENVKIIQ 333
Query: 379 VPGRLYPIQLEYHPIVELD-RTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISE 437
VPGRLYPIQL Y PI+ D R K+++ +P PYI+I+ +ID+KY E+GD+LIF+SG+SE
Sbjct: 334 VPGRLYPIQLLYKPIIIEDIRYKNDRFNPSPYIQIMQMIDQKYSADEKGDLLIFLSGMSE 393
Query: 438 ISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITID 497
IS++V AA+EY++K WI+LPLHSTL++ EQD+VF YAPEG+RKCIVSTNIAETSITID
Sbjct: 394 ISTVVDAAKEYSQKKNNWIILPLHSTLAISEQDKVFDYAPEGIRKCIVSTNIAETSITID 453
Query: 498 GIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS 557
GIRFV DSGKVKEMSY+ + KM L+EFWISKASAEQRKGRAGRTGPGVCYRLYSE +Y
Sbjct: 454 GIRFVADSGKVKEMSYNPSCKMQQLKEFWISKASAEQRKGRAGRTGPGVCYRLYSETEYL 513
Query: 558 LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSK 617
L +YSTPE++RV +DSLLL ++ MGL D RKFPF+E P E+IE+S+ SL +HGA+
Sbjct: 514 NLEKYSTPELQRVPLDSLLLQMIAMGLPDARKFPFIEPPSPESIENSIISLKEHGALTDN 573
Query: 618 ERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCET 677
E++T +GR L+ LPVDI +GKML+ GS+FHQI+ VLSLAA LS+Q+PFTN+A+RD +CET
Sbjct: 574 EKITCIGRTLARLPVDITIGKMLIMGSIFHQIEPVLSLAAALSIQTPFTNKAYRDSECET 633
Query: 678 ARKELESNHGDPLTVLNAYKEWLGVKKD--------RVRSKKWCKRRGIEEQRFYEVTKL 729
+RK+LES+HGDP+T+LNA++EWL +K+ R SKKWCKRRG+EEQRFYE+TKL
Sbjct: 634 SRKKLESDHGDPITLLNAFREWLEIKQQSSQESRSTRNNSKKWCKRRGLEEQRFYEMTKL 693
Query: 730 RSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKAD 789
R+QFK++L D GL+ + ++S+SS ERA+RHGE+KLL+++KR + P++RK LK +
Sbjct: 694 RAQFKELLQDCGLLKNFSESNSSMSSAERAIRHGELKLLKSLKRIYKQNEPRKRKQLKLE 753
Query: 790 NAYEIE-EEEEEEEGE 804
+++I+ E+ + E+GE
Sbjct: 754 -SFDIQLEDNDHEDGE 768
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157117593|ref|XP_001658842.1| ATP-dependent RNA helicase [Aedes aegypti] gi|108875986|gb|EAT40211.1| AAEL008035-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 627 bits (1618), Expect = e-176, Method: Compositional matrix adjust.
Identities = 295/511 (57%), Positives = 399/511 (78%), Gaps = 22/511 (4%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
+++A+ LS Y V++LDE+HERHLHGDFLLG+ KCL+ + ++K++LMSATINI+LF Y
Sbjct: 353 QLSAEENLSQYSVIILDEVHERHLHGDFLLGITKCLMRAKPDIKLVLMSATINIKLFGDY 412
Query: 370 F-NRIAKIIKVPGRLYPIQLEYHPIVE---------LDRTKSEKLDPGPYIRILSIIDKK 419
F A+II+VPGRL+PI+L Y P ++ + S+++ P PYI+IL +ID+K
Sbjct: 413 FAEEKAQIIEVPGRLFPIKLHYMPQIQDVPTTSSGKSKQKTSDRISPEPYIQILQLIDQK 472
Query: 420 YPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEG 479
YP TE+GDVLIF+SG++EI+SIV AA+EY EK++ WI+LPLHSTLS+ EQD+VF Y P+G
Sbjct: 473 YPPTEKGDVLIFLSGLNEITSIVDAAKEYAEKNKNWIILPLHSTLSIAEQDKVFDYPPDG 532
Query: 480 LRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRA 539
+RKCI+STNIAETS+TIDGIRFV+DSGKVKEMSYD T KM L+EFWISKASAEQRKGRA
Sbjct: 533 IRKCIISTNIAETSVTIDGIRFVIDSGKVKEMSYDATTKMQRLKEFWISKASAEQRKGRA 592
Query: 540 GRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 599
GRTGPG+CYRLYSE+Q+ Y+T EI +V ++SLLL ++ MGL + R FPF+E+PPAE
Sbjct: 593 GRTGPGICYRLYSEKQFYDFESYTTAEILKVPLESLLLQMISMGLPNARMFPFIESPPAE 652
Query: 600 NIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVL 659
NIE+++ +L H A+ E++T LG+ L+ +PVDI +GKML+ G +F Q+ VL+LAA L
Sbjct: 653 NIENAIMNLKHHEALTVDEKLTPLGKALARIPVDIGIGKMLLMGCVFQQLQPVLTLAATL 712
Query: 660 SVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVR---------SK 710
SVQSPFTNRA+R+P+CE ARK ES+HGDP+T+LNAYKEWL +K++R SK
Sbjct: 713 SVQSPFTNRAYREPECERARKSFESDHGDPITLLNAYKEWLELKQNRFEYRRDEHRESSK 772
Query: 711 KWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQA 770
WC+RRG+EEQRFYE+TKLR QF+ +L D GL+ + S++S ERA+RHGE+K L+
Sbjct: 773 SWCRRRGLEEQRFYEITKLRRQFQDLLQDCGLMEN--ANSDSMTSAERAIRHGELKQLKE 830
Query: 771 IKRKKAEEAPKRRKMLKADNAYEIEEEEEEE 801
+++ EAP++RK+LK+D + +EE EE++
Sbjct: 831 LRKSHRMEAPRKRKLLKSD-PWGLEEGEEDD 860
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1417 | ||||||
| UNIPROTKB|E2RTK2 | 1177 | DHX34 "Uncharacterized protein | 0.309 | 0.372 | 0.572 | 2e-238 | |
| MGI|MGI:1918973 | 1145 | Dhx34 "DEAH (Asp-Glu-Ala-His) | 0.318 | 0.393 | 0.560 | 1.5e-236 | |
| UNIPROTKB|Q14147 | 1143 | DHX34 "Probable ATP-dependent | 0.305 | 0.378 | 0.577 | 3.1e-236 | |
| UNIPROTKB|E2RTK4 | 1140 | DHX34 "Uncharacterized protein | 0.309 | 0.385 | 0.572 | 1.3e-235 | |
| ZFIN|ZDB-GENE-061207-30 | 1150 | dhx34 "DEAH (Asp-Glu-Ala-His) | 0.316 | 0.389 | 0.578 | 5.7e-235 | |
| UNIPROTKB|F1RLY9 | 1146 | DHX34 "Uncharacterized protein | 0.311 | 0.384 | 0.562 | 4.5e-233 | |
| FB|FBgn0052533 | 1139 | CG32533 [Drosophila melanogast | 0.333 | 0.414 | 0.544 | 9.7e-233 | |
| UNIPROTKB|E1BJ90 | 1146 | DHX34 "Uncharacterized protein | 0.311 | 0.384 | 0.567 | 1.1e-227 | |
| WB|WBGene00021365 | 1018 | smgl-2 [Caenorhabditis elegans | 0.323 | 0.449 | 0.457 | 7.8e-152 | |
| UNIPROTKB|J3KR71 | 576 | DHX34 "Probable ATP-dependent | 0.145 | 0.357 | 0.626 | 8.2e-129 |
| UNIPROTKB|E2RTK2 DHX34 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1354 (481.7 bits), Expect = 2.0e-238, Sum P(6) = 2.0e-238
Identities = 253/442 (57%), Positives = 330/442 (74%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
++ + L Y VL++DE+HERHLH DFLLGV++ LL ++K+ILMSATINI LF +Y
Sbjct: 267 QIQREPSLPQYQVLIVDEVHERHLHNDFLLGVLRRLLPKRPDLKVILMSATINISLFSSY 326
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
F A +++VPGRL+PI + Y P E +KSEKLDPGP++R+L ID KYP ERGD+
Sbjct: 327 FGT-APVVQVPGRLFPITVVYQPQEAEPVASKSEKLDPGPFLRVLEAIDNKYPPEERGDL 385
Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
L+F+SG++EISS++ AAQ Y ++Q W+VLPLHS LS+ +QD+VF AP G+RKCI+STN
Sbjct: 386 LVFLSGMAEISSVLEAAQTYASRTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTN 445
Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
IAETS+TIDGIRFVVDSGKVKEM YD AK+ LQEFWIS+ASAEQRKGRAGRTGPGVC+
Sbjct: 446 IAETSVTIDGIRFVVDSGKVKEMGYDPQAKLHRLQEFWISQASAEQRKGRAGRTGPGVCF 505
Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
RLY+E Y A Y PEIRRV++D+L+L + M +GD R FPF+E PP ++E+++ L
Sbjct: 506 RLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPPASLETAILYL 565
Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
GA+DS E +T +G L+ LPVD+ +GKML+ GSMFH + VL++AA LSVQSPFT
Sbjct: 566 QDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFHLAEPVLTIAAALSVQSPFTRS 625
Query: 669 AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGIEEQRFYEVT 727
A +P+C AR+ LES+ GDP T+ N + W+ VK +R R S+KWC+ RGIEE R YE+
Sbjct: 626 AQSNPECAAARRPLESDQGDPFTLFNVFNAWVQVKSERSRNSRKWCRHRGIEEHRLYEMA 685
Query: 728 KLRSQFKQVLGDSGLITDIPGP 749
LR QFK++L D GL+ P
Sbjct: 686 NLRRQFKELLEDHGLLARAQAP 707
|
|
| MGI|MGI:1918973 Dhx34 "DEAH (Asp-Glu-Ala-His) box polypeptide 34" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1346 (478.9 bits), Expect = 1.5e-236, Sum P(6) = 1.5e-236
Identities = 259/462 (56%), Positives = 340/462 (73%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
++ + L Y VL++DE+HERHLH DFLLGV++ LL ++K+ILMSATINI LF +Y
Sbjct: 265 QIQREPSLPQYQVLIVDEVHERHLHNDFLLGVLQRLLPQRPDLKVILMSATINISLFSSY 324
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRT--KSEKLDPGPYIRILSIIDKKYPRTERGD 427
F+ A +++VPGRL+PI + Y P E D+T KSEKLDP P++R+L ID KYP ERGD
Sbjct: 325 FSH-APVVQVPGRLFPITVVYQP-QEADQTASKSEKLDPRPFLRVLEAIDNKYPPEERGD 382
Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
+L+F+SG++EI++++ AAQ Y +Q W+VLPLHS LS+ +QD+VF AP G+RKCI+ST
Sbjct: 383 LLVFLSGMAEITTVLDAAQAYASLTQRWVVLPLHSALSVSDQDKVFDVAPAGVRKCILST 442
Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
NIAETS+TIDGIRFVVDSGKVKEMSYD AK+ LQEFWIS+ASAEQRKGRAGRTGPGVC
Sbjct: 443 NIAETSVTIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVC 502
Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
YRLY+E Y A Y PEIRRV++D+L+L + M +GD R FPF+E PP ++E+++
Sbjct: 503 YRLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPPASVETAILY 562
Query: 608 LTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTN 667
L + GA+DS E +T +G L+ LPVD+ +GKML+ GSMF + VL++AA LSVQSPFT
Sbjct: 563 LQEQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLAEPVLTIAAALSVQSPFTR 622
Query: 668 RAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRV-RSKKWCKRRGIEEQRFYEV 726
A + DC TAR+ LES+ GDP T+ N + W+ VK +R S+KWC+RRG+EE R YE+
Sbjct: 623 SAQSNLDCATARRPLESDQGDPFTLFNVFNAWVQVKSERSGNSRKWCRRRGVEEHRLYEM 682
Query: 727 TKLRSQFKQVLGDSGLIT--DIPGPDASLSS----RERALRH 762
LR QFK++L D GL++ + P S S RER H
Sbjct: 683 ANLRRQFKELLEDHGLLSGAQVVAPGDSYSRLQQRRERRALH 724
|
|
| UNIPROTKB|Q14147 DHX34 "Probable ATP-dependent RNA helicase DHX34" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1348 (479.6 bits), Expect = 3.1e-236, Sum P(6) = 3.1e-236
Identities = 252/436 (57%), Positives = 331/436 (75%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
++ + L Y+VL++DE+HERHLH DFLLGV++ LL + ++K+ILMSATINI LF +Y
Sbjct: 263 QIQREPSLPQYEVLIVDEVHERHLHNDFLLGVLQRLLPTRPDLKVILMSATINISLFSSY 322
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
F+ A +++VPGRL+PI + Y P E +KSEKLDP P++R+L ID KYP ERGD+
Sbjct: 323 FSN-APVVQVPGRLFPITVVYQPQEAEPTTSKSEKLDPRPFLRVLESIDHKYPPEERGDL 381
Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
L+F+SG++EIS+++ AAQ Y +Q W+VLPLHS LS+ +QD+VF AP G+RKCI+STN
Sbjct: 382 LVFLSGMAEISAVLEAAQTYASHTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTN 441
Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
IAETS+TIDGIRFVVDSGKVKEMSYD AK+ LQEFWIS+ASAEQRKGRAGRTGPGVC+
Sbjct: 442 IAETSVTIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCF 501
Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
RLY+E Y A Y PEIRRV++DSL+L + M +GD R FPF+E PP ++E+++ L
Sbjct: 502 RLYAESDYDAFAPYPVPEIRRVALDSLVLQMKSMSVGDPRTFPFIEPPPPASLETAILYL 561
Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
GA+DS E +T +G L+ LPVD+ +GKML+ GSMF ++ VL++AA LSVQSPFT
Sbjct: 562 RDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEPVLTIAAALSVQSPFTRS 621
Query: 669 AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGIEEQRFYEVT 727
A P+C AR+ LES+ GDP T+ N + W+ VK +R R S+KWC+RRGIEE R YE+
Sbjct: 622 AQSSPECAAARRPLESDQGDPFTLFNVFNAWVQVKSERSRNSRKWCRRRGIEEHRLYEMA 681
Query: 728 KLRSQFKQVLGDSGLI 743
LR QFK++L D GL+
Sbjct: 682 NLRRQFKELLEDHGLL 697
|
|
| UNIPROTKB|E2RTK4 DHX34 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1354 (481.7 bits), Expect = 1.3e-235, Sum P(6) = 1.3e-235
Identities = 253/442 (57%), Positives = 330/442 (74%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
++ + L Y VL++DE+HERHLH DFLLGV++ LL ++K+ILMSATINI LF +Y
Sbjct: 262 QIQREPSLPQYQVLIVDEVHERHLHNDFLLGVLRRLLPKRPDLKVILMSATINISLFSSY 321
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
F A +++VPGRL+PI + Y P E +KSEKLDPGP++R+L ID KYP ERGD+
Sbjct: 322 FGT-APVVQVPGRLFPITVVYQPQEAEPVASKSEKLDPGPFLRVLEAIDNKYPPEERGDL 380
Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
L+F+SG++EISS++ AAQ Y ++Q W+VLPLHS LS+ +QD+VF AP G+RKCI+STN
Sbjct: 381 LVFLSGMAEISSVLEAAQTYASRTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTN 440
Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
IAETS+TIDGIRFVVDSGKVKEM YD AK+ LQEFWIS+ASAEQRKGRAGRTGPGVC+
Sbjct: 441 IAETSVTIDGIRFVVDSGKVKEMGYDPQAKLHRLQEFWISQASAEQRKGRAGRTGPGVCF 500
Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
RLY+E Y A Y PEIRRV++D+L+L + M +GD R FPF+E PP ++E+++ L
Sbjct: 501 RLYAESDYDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPPASLETAILYL 560
Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
GA+DS E +T +G L+ LPVD+ +GKML+ GSMFH + VL++AA LSVQSPFT
Sbjct: 561 QDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFHLAEPVLTIAAALSVQSPFTRS 620
Query: 669 AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGIEEQRFYEVT 727
A +P+C AR+ LES+ GDP T+ N + W+ VK +R R S+KWC+ RGIEE R YE+
Sbjct: 621 AQSNPECAAARRPLESDQGDPFTLFNVFNAWVQVKSERSRNSRKWCRHRGIEEHRLYEMA 680
Query: 728 KLRSQFKQVLGDSGLITDIPGP 749
LR QFK++L D GL+ P
Sbjct: 681 NLRRQFKELLEDHGLLARAQAP 702
|
|
| ZFIN|ZDB-GENE-061207-30 dhx34 "DEAH (Asp-Glu-Ala-His) box polypeptide 34" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1383 (491.9 bits), Expect = 5.7e-235, Sum P(6) = 5.7e-235
Identities = 261/451 (57%), Positives = 341/451 (75%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
++ D L Y VL++DE+HERHLH DFLLGV++ LL +++++LMSATINI+LF +Y
Sbjct: 263 QIQQDASLGQYQVLIVDEVHERHLHCDFLLGVLRSLLSLRPDLRLVLMSATINIKLFSSY 322
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDR-TKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
FN A +++VPGRL+PIQ+ Y PI ++ ++SEKLDP PY+R+L ID++YP+ ERGD+
Sbjct: 323 FND-APVLQVPGRLFPIQVIYQPIPPEEQVSRSEKLDPRPYLRVLQGIDQRYPQEERGDL 381
Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
L+F+SG++EIS+I A Q Y +Q WIVLPLHSTLSL +QD+VF AP G+RKCI+STN
Sbjct: 382 LLFLSGVAEISTIQEACQTYATHTQRWIVLPLHSTLSLAQQDKVFDIAPPGVRKCIISTN 441
Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
IAETS+TIDG+RFVVDSGKVKEMS+D AKM LQEFWIS+AS+EQRKGRAGRTGPGVCY
Sbjct: 442 IAETSVTIDGVRFVVDSGKVKEMSFDPKAKMQRLQEFWISRASSEQRKGRAGRTGPGVCY 501
Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
RLYSE Y A Y PEI RV++DSL+L + MGLGD R F F++ PPA +I+++V L
Sbjct: 502 RLYSESDYDAFAPYPVPEIHRVALDSLILQMKSMGLGDPRTFTFIDPPPASSIQTAVTYL 561
Query: 609 TQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNR 668
+ GA+D +TS+GR L+ LPVD+ +GKMLV GS+F+ ++ VL++AA LSVQSPF
Sbjct: 562 REQGALDEHGELTSIGRLLAQLPVDVVIGKMLVLGSVFNLVEPVLTVAAALSVQSPFLRS 621
Query: 669 AFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGIEEQRFYEVT 727
A +PDC TAR+ L SNHGDP T++N + W+ VK DR S+KWC+RRG+EEQR YE+
Sbjct: 622 AQHNPDCSTARQPLNSNHGDPFTLMNTFNAWVQVKADRGSGSRKWCRRRGLEEQRLYEMV 681
Query: 728 KLRSQFKQVLGDSGLITDIPGPDASLSSRER 758
LR QFK++L GL+ D G R R
Sbjct: 682 NLRRQFKELLRSHGLLEDDTGRATEPQDRAR 712
|
|
| UNIPROTKB|F1RLY9 DHX34 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1308 (465.5 bits), Expect = 4.5e-233, Sum P(6) = 4.5e-233
Identities = 255/453 (56%), Positives = 329/453 (72%)
Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
L Y VL++DE+HERHLH DFLLGV++ LL ++K+ILMSAT+N LF YF + A +
Sbjct: 270 LPQYRVLIVDEVHERHLHNDFLLGVLQRLLPRRPDLKVILMSATVNTSLFSAYFGQ-APV 328
Query: 377 IKVPGRLYPIQLEYHPIVELDRTKS--EKLDPGPYIRILSIIDKKYPRTERGDVLIFMSG 434
++VPGRL+PI + Y P E + T S EKLDP P+IR+L ID KYP ERGD+L+F+SG
Sbjct: 329 VQVPGRLFPITVVYQP-QEAEPTASTLEKLDPRPFIRVLEAIDSKYPPEERGDLLVFLSG 387
Query: 435 ISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSI 494
++EI +++ AAQ + +S W+VLPLHSTLS+ QD+VF AP G+RKCI+STNIAETS+
Sbjct: 388 LAEIGAVLEAAQAHARRSGRWVVLPLHSTLSVAAQDKVFDVAPPGVRKCILSTNIAETSV 447
Query: 495 TIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEE 554
TIDGIRFVVDSGKVKEMSYD AK+ LQEFWIS+ASAEQRKGRAGRTGPGVC+RLY+E
Sbjct: 448 TIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCFRLYAES 507
Query: 555 QYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAI 614
Y A Y PEIRRV++D+L+L + M +GD R FPF+E PPA ++E+++ L GA+
Sbjct: 508 DYDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPAASLETAILYLRDQGAL 567
Query: 615 DSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPD 674
D E +T +G L+ LPVDI +GKMLV GS+ H + VL++AA LSVQSPFT +P
Sbjct: 568 DGSEALTPIGSLLAQLPVDIVIGKMLVLGSVLHLAEPVLTIAAALSVQSPFTRSTRSNPK 627
Query: 675 CETARKELESNHGDPLTVLNAYKEWLGVKKDR-VRSKKWCKRRGIEEQRFYEVTKLRSQF 733
C A + LES+HGDP T+ N + W+ VK DR +S++WC+R GIEE R YE+ LR QF
Sbjct: 628 C--AWRALESDHGDPFTLFNVFNNWVQVKSDRSTKSRRWCRREGIEEHRLYEMANLRRQF 685
Query: 734 KQVLGDSGLI--TDIPGPDASLSSRERALRHGE 764
K++L D GL+ T P P S S R +H E
Sbjct: 686 KELLEDHGLLAGTQAPKPGDSYS---RLRQHRE 715
|
|
| FB|FBgn0052533 CG32533 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1384 (492.3 bits), Expect = 9.7e-233, Sum P(5) = 9.7e-233
Identities = 264/485 (54%), Positives = 365/485 (75%)
Query: 297 LLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIIL 356
+L + + LL + VAA+ L YD L+LDEIHER+L GDFLLGV KCLL + ++K+IL
Sbjct: 236 ILFITEGLLLRQLAVAAN--LDQYDALILDEIHERNLFGDFLLGVTKCLLRARPQLKLIL 293
Query: 357 MSATINIELFHTYFNRI-AKIIKVPGRLYPIQLEY--HPIVELD-------RTKSEKLDP 406
MSATIN+ELFH YF A++++VPGRL+PI+L Y P +EL R++ ++DP
Sbjct: 294 MSATINVELFHGYFGEEGARLVQVPGRLFPIKLRYLPPPALELKAGQATSKRSQRNRIDP 353
Query: 407 GPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSL 466
P++++LS+ID++YP +ERGDVLIF+SG++EI S+V A EY + W+VLPLHS ++
Sbjct: 354 APFVQVLSLIDQQYPTSERGDVLIFVSGVNEIESVVEAVHEYATEQTHWLVLPLHSGQAI 413
Query: 467 EEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFW 526
+Q +VF YAPEG+RKCIVSTNIAETS+T+DG+RFVVDSGKVKEM++D T K L+EFW
Sbjct: 414 ADQSKVFDYAPEGMRKCIVSTNIAETSLTVDGVRFVVDSGKVKEMNFDATCKGQRLKEFW 473
Query: 527 ISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGD 586
+SK+SA+QRKGRAGRTGPGVC+RLY+ EQY+ Y TPEI RV +D++LL +V MGL D
Sbjct: 474 VSKSSADQRKGRAGRTGPGVCFRLYTAEQYNAFEAYPTPEIYRVPLDTMLLQMVSMGLPD 533
Query: 587 VRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMF 646
VR FPF+EAP E IE ++ +L QH A+ +E++T LGR L++LPV++ +GKML+ GS+F
Sbjct: 534 VRAFPFIEAPETERIEQTILALKQHCALSVEEKITPLGRSLANLPVELSIGKMLLMGSVF 593
Query: 647 HQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDR 706
+++ +L+LAA+LSVQ+P TNRA D C R+ LES+HGD T++ Y W+ +K R
Sbjct: 594 PEVEQLLTLAAMLSVQNPLTNRAHTDQRCVRERESLESDHGDLFTLVRLYNVWVQLKMRR 653
Query: 707 VRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIK 766
+++WC+R GIEEQRFYEVTKLR QF+++L G++ D+ L+S ERA RHGE++
Sbjct: 654 DGTRQWCRRLGIEEQRFYEVTKLRQQFQRILESCGMVV-ASDSDSQLTSAERATRHGELR 712
Query: 767 LLQAI 771
L+A+
Sbjct: 713 QLKAM 717
|
|
| UNIPROTKB|E1BJ90 DHX34 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1341 (477.1 bits), Expect = 1.1e-227, Sum P(5) = 1.1e-227
Identities = 253/446 (56%), Positives = 330/446 (73%)
Query: 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKI 376
L Y VL++DE+HERHLH DFLLGV++ LL ++K++LMSATINI LF +YF A +
Sbjct: 270 LPQYQVLIVDEVHERHLHNDFLLGVLQRLLPQRPDLKVVLMSATINISLFSSYFGN-APV 328
Query: 377 IKVPGRLYPIQLEYHPI-VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGI 435
++VPGRL+PI + Y P E +KSEKLDP P++R+L ID KYP ERGD+L+F+SG+
Sbjct: 329 VQVPGRLFPITVVYQPQEAEPTTSKSEKLDPRPFLRVLEAIDNKYPPEERGDLLVFLSGM 388
Query: 436 SEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSIT 495
+EIS+++ AQ Y +Q W+VLPLHS LS+ +QD+VF AP G+RKCI+STNIAETS+T
Sbjct: 389 AEISAVLEPAQAYASHTQRWVVLPLHSALSVADQDKVFDVAPPGVRKCILSTNIAETSVT 448
Query: 496 IDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQ 555
IDGIRFVVDSGKVKEMSYD AK+ LQEFWIS+ASAEQRKGRAGRTGPGVC+RLY+E
Sbjct: 449 IDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQASAEQRKGRAGRTGPGVCFRLYAESD 508
Query: 556 YSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAID 615
Y A Y PEIRRV++D+L+L + M +GD R FPF+E PP ++E+++ L GA+D
Sbjct: 509 YDAFAPYPVPEIRRVALDALVLQMKSMSVGDPRTFPFIEPPPPTSLETAILYLRDQGALD 568
Query: 616 SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDC 675
S E +T +G L+ LPVD+ +GKML+ GSMFH + VL++AA LSVQ+PFT A +P+C
Sbjct: 569 SSEALTPIGSLLAQLPVDVVIGKMLILGSMFHLAEPVLTIAAALSVQTPFTRSAQSNPEC 628
Query: 676 ETARKELESNHGDPLTVLNAYKEWLGVKKDRVR-SKKWCKRRGIEEQRFYEVTKLRSQFK 734
R+ LES+ GDP T+LN + W+ VK +R R S+KWC+ RGIEE R YE+ LR QFK
Sbjct: 629 AATRRPLESDQGDPFTLLNVFNTWVQVKSERGRNSRKWCRHRGIEEHRLYEMANLRRQFK 688
Query: 735 QVLGDSGLIT--DIPGPDASLSSRER 758
++L D GL+ P P S S +R
Sbjct: 689 ELLEDHGLLAGAQAPQPGDSYSRLQR 714
|
|
| WB|WBGene00021365 smgl-2 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 1136 (405.0 bits), Expect = 7.8e-152, Sum P(5) = 7.8e-152
Identities = 214/468 (45%), Positives = 324/468 (69%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
++ D+ L Y+V++LDE+HERHL D L+G+++ L ++K+ILMSATIN++LF Y
Sbjct: 174 QMEKDSLLEKYNVIILDEVHERHLTSDLLIGLLRDLCTKRDDLKLILMSATINLDLFKGY 233
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVE-LDRT--KSEKLDPGPYIRILSIIDKKYPRTERG 426
F A +++VPGRL+PI + +HPI + +D++ K+ K+DP PY++IL +IDK++P T+RG
Sbjct: 234 FEG-APVVQVPGRLFPIDVRWHPIKQFIDQSDKKTHKIDPEPYLKILELIDKQFPSTQRG 292
Query: 427 DVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486
D LIF++G++EIS + + Y E + GWI+L LHSTLS+EEQD+VF AP G+RKCI+S
Sbjct: 293 DALIFLNGVAEISMVAEHLKNYAELTNGWIILMLHSTLSVEEQDKVFDQAPVGIRKCILS 352
Query: 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546
TN+AETS+TIDGIRFV+DSGKV + ++ L EFW+SKASA QRKGRAGRTGPG+
Sbjct: 353 TNVAETSVTIDGIRFVIDSGKVNLIKHEPGTGTQKLTEFWVSKASANQRKGRAGRTGPGI 412
Query: 547 CYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLG-DVRKFPFLEAPPAENIESSV 605
CYRLYS+EQ+ + +++ EI RVS+ + L ++ + LG D R FPF+E P + + +
Sbjct: 413 CYRLYSQEQFEKMDDFTVSEINRVSLQEMALKMISLNLGLDPRTFPFIEKPSEDVLNEGL 472
Query: 606 RSLTQHGAIDSKE----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSV 661
L + S +T+LG +S LPV++P+ KMLV+G + +++ +L++AA LSV
Sbjct: 473 EVLKFQRVLRSDRGDILTLTALGNMVSKLPVEVPIAKMLVYGCVVDELEVMLTVAAGLSV 532
Query: 662 QSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQ 721
QSPFTNR++R+ + R L S GDP T+++ ++EW+ K +++W GI+E
Sbjct: 533 QSPFTNRSYRELEIVERRASLTSPLGDPFTLISIFREWVLQKAFEGTARRWTMENGIDEH 592
Query: 722 RFYEVTKLRSQFKQVLGDSGLITDIPGPDASLS-SRERALRHGEIKLL 768
R YE++KLR+Q++Q+L D+GL+ + SR+R + GE + L
Sbjct: 593 RLYEISKLRAQYRQILEDAGLVEKASAAETGEDDSRQRRIDQGEKRKL 640
|
|
| UNIPROTKB|J3KR71 DHX34 "Probable ATP-dependent RNA helicase DHX34" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 680 (244.4 bits), Expect = 8.2e-129, Sum P(3) = 8.2e-129
Identities = 129/206 (62%), Positives = 159/206 (77%)
Query: 472 VFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKAS 531
VF AP G+RKCI+STNIAETS+TIDGIRFVVDSGKVKEMSYD AK+ LQEFWIS+AS
Sbjct: 340 VFDVAPPGVRKCILSTNIAETSVTIDGIRFVVDSGKVKEMSYDPQAKLQRLQEFWISQAS 399
Query: 532 AEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFP 591
AEQRKGRAGRTGPGVC+RLY+E Y A Y PEIRRV++DSL+L + M +GD R FP
Sbjct: 400 AEQRKGRAGRTGPGVCFRLYAESDYDAFAPYPVPEIRRVALDSLVLQMKSMSVGDPRTFP 459
Query: 592 FLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDT 651
F+E PP ++E+++ L GA+DS E +T +G L+ LPVD+ +GKML+ GSMF ++
Sbjct: 460 FIEPPPPASLETAILYLRDQGALDSSEALTPIGSLLAQLPVDVVIGKMLILGSMFSLVEP 519
Query: 652 VLSLAAVLSVQSPFTNRAFRDPDCET 677
VL++AA LSVQSPFT A P+C T
Sbjct: 520 VLTIAAALSVQSPFTRSAQSSPECCT 545
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9DBV3 | DHX34_MOUSE | 3, ., 6, ., 4, ., 1, 3 | 0.5098 | 0.3817 | 0.4724 | yes | N/A |
| Q14147 | DHX34_HUMAN | 3, ., 6, ., 4, ., 1, 3 | 0.5430 | 0.3436 | 0.4260 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1417 | |||
| COG1643 | 845 | COG1643, HrpA, HrpA-like helicases [DNA replicatio | 1e-114 | |
| TIGR01967 | 1283 | TIGR01967, DEAH_box_HrpA, ATP-dependent helicase H | 2e-79 | |
| PRK11131 | 1294 | PRK11131, PRK11131, ATP-dependent RNA helicase Hrp | 4e-77 | |
| TIGR01970 | 819 | TIGR01970, DEAH_box_HrpB, ATP-dependent helicase H | 1e-59 | |
| PRK11664 | 812 | PRK11664, PRK11664, ATP-dependent RNA helicase Hrp | 3e-59 | |
| COG1643 | 845 | COG1643, HrpA, HrpA-like helicases [DNA replicatio | 6e-31 | |
| COG1643 | 845 | COG1643, HrpA, HrpA-like helicases [DNA replicatio | 1e-27 | |
| pfam04408 | 91 | pfam04408, HA2, Helicase associated domain (HA2) | 4e-21 | |
| TIGR01967 | 1283 | TIGR01967, DEAH_box_HrpA, ATP-dependent helicase H | 1e-20 | |
| PRK11131 | 1294 | PRK11131, PRK11131, ATP-dependent RNA helicase Hrp | 1e-19 | |
| PRK11131 | 1294 | PRK11131, PRK11131, ATP-dependent RNA helicase Hrp | 3e-19 | |
| TIGR01967 | 1283 | TIGR01967, DEAH_box_HrpA, ATP-dependent helicase H | 4e-18 | |
| smart00847 | 82 | smart00847, HA2, Helicase associated domain (HA2) | 9e-17 | |
| PRK11664 | 812 | PRK11664, PRK11664, ATP-dependent RNA helicase Hrp | 3e-15 | |
| PHA02653 | 675 | PHA02653, PHA02653, RNA helicase NPH-II; Provision | 4e-15 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 7e-15 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 6e-13 | |
| TIGR01970 | 819 | TIGR01970, DEAH_box_HrpB, ATP-dependent helicase H | 2e-12 | |
| TIGR01967 | 1283 | TIGR01967, DEAH_box_HrpA, ATP-dependent helicase H | 6e-12 | |
| COG1643 | 845 | COG1643, HrpA, HrpA-like helicases [DNA replicatio | 9e-12 | |
| PRK11131 | 1294 | PRK11131, PRK11131, ATP-dependent RNA helicase Hrp | 1e-10 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 2e-10 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 7e-10 | |
| pfam04408 | 91 | pfam04408, HA2, Helicase associated domain (HA2) | 3e-09 | |
| TIGR01970 | 819 | TIGR01970, DEAH_box_HrpB, ATP-dependent helicase H | 4e-09 | |
| smart00847 | 82 | smart00847, HA2, Helicase associated domain (HA2) | 6e-09 | |
| pfam04408 | 91 | pfam04408, HA2, Helicase associated domain (HA2) | 7e-09 | |
| pfam04408 | 91 | pfam04408, HA2, Helicase associated domain (HA2) | 9e-09 | |
| pfam04408 | 91 | pfam04408, HA2, Helicase associated domain (HA2) | 9e-09 | |
| smart00847 | 82 | smart00847, HA2, Helicase associated domain (HA2) | 4e-08 | |
| smart00847 | 82 | smart00847, HA2, Helicase associated domain (HA2) | 4e-08 | |
| pfam07717 | 109 | pfam07717, OB_NTP_bind, Oligonucleotide/oligosacch | 4e-08 | |
| smart00847 | 82 | smart00847, HA2, Helicase associated domain (HA2) | 8e-08 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 1e-07 | |
| PRK11664 | 812 | PRK11664, PRK11664, ATP-dependent RNA helicase Hrp | 5e-07 | |
| COG1643 | 845 | COG1643, HrpA, HrpA-like helicases [DNA replicatio | 7e-06 | |
| COG1643 | 845 | COG1643, HrpA, HrpA-like helicases [DNA replicatio | 5e-05 | |
| COG1643 | 845 | COG1643, HrpA, HrpA-like helicases [DNA replicatio | 8e-05 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 8e-04 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 8e-04 | |
| TIGR01967 | 1283 | TIGR01967, DEAH_box_HrpA, ATP-dependent helicase H | 0.001 | |
| PRK11131 | 1294 | PRK11131, PRK11131, ATP-dependent RNA helicase Hrp | 0.001 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 0.002 | |
| TIGR01970 | 819 | TIGR01970, DEAH_box_HrpB, ATP-dependent helicase H | 0.003 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 0.004 |
| >gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 378 bits (974), Expect = e-114
Identities = 158/437 (36%), Positives = 237/437 (54%), Gaps = 25/437 (5%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-VKIILMSATINIELFHT 368
E+ D LS Y V+++DE HER L+ D LLG++K LL + +K+I+MSAT++ E F
Sbjct: 153 EIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDAERFSA 212
Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
YF A +I++ GR YP+++ Y P E D L I++ +D G +
Sbjct: 213 YFGN-APVIEIEGRTYPVEIRYLPEAEAD----YILLDA----IVAAVDIHLR-EGSGSI 262
Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
L+F+ G EI ++ E +LPL+ LS EEQ RVF AP G RK +++TN
Sbjct: 263 LVFLPGQREIERTAEWLEK-AELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATN 321
Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
IAETS+TI GIR+V+DSG KE YD ++ L+ ISKASA+QR GRAGRTGPG+CY
Sbjct: 322 IAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICY 381
Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLG-DVRKFPFLEAPPAENIESSVRS 607
RLYSEE + E++ PEI R + L+L L +G+G D+ FPFL+ PP I++++
Sbjct: 382 RLYSEEDFLAFPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPFPFLDPPPEAAIQAALTL 441
Query: 608 LTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ---SP 664
L + GA+D ++T LG+ +S LP+D L +ML+ + ++A++LS Q S
Sbjct: 442 LQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASMLSEQDRESD 501
Query: 665 FTN-RAFRDPDCET------ARKELESNHGDPLTVLNAYKEWLGVKKDRVRS--KKWCKR 715
F+ R R+ GD L +L A+ + + K+ + C+
Sbjct: 502 FSRDVKLRKQRTAQDLLKRLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRA 561
Query: 716 RGIEEQRFYEVTKLRSQ 732
+ + +
Sbjct: 562 MLFPTKALSRAPWIIAA 578
|
Length = 845 |
| >gnl|CDD|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Score = 287 bits (737), Expect = 2e-79
Identities = 165/444 (37%), Positives = 245/444 (55%), Gaps = 27/444 (6%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
E D FLS YD +++DE HER L+ DFLLG +K LL ++KII+ SATI+ E F +
Sbjct: 170 ETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSATIDPERFSRH 229
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
FN A II+V GR YP+++ Y P+VE + E D IL +D+ + GD+L
Sbjct: 230 FNN-APIIEVSGRTYPVEVRYRPLVE----EQEDDDLDQLEAILDAVDELFAEGP-GDIL 283
Query: 430 IFMSGISEISSIVRAAQEYNEKSQ--GWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
IF+ G EI R A E K +LPL++ LS +EQ RVF P R+ +++T
Sbjct: 284 IFLPGEREI----RDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQ--PHSGRRIVLAT 337
Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
N+AETS+T+ GI +V+D+G + Y K+ L IS+ASA QRKGR GR PG+C
Sbjct: 338 NVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPGIC 397
Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
RLYSEE ++ E++ PEI R ++ S++L ++ + LGD+ FPF+EAP I R
Sbjct: 398 IRLYSEEDFNSRPEFTDPEILRTNLASVILQMLALRLGDIAAFPFIEAPDPRAIRDGFRL 457
Query: 608 LTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
L + GA+D E ++T +GR L+ LPVD L +ML+ + VL +A+ LS+Q P
Sbjct: 458 LEELGALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIASALSIQDP 517
Query: 665 FTNRAFRDPDCETARKELESNHGDPLTVLNAY-KEWLGVKKDR-VRSK----KWCKRRGI 718
R + + A + + DP + + W +++ R S C+++ +
Sbjct: 518 RE----RPMEKQQAADQAHARFKDPRSDFLSRVNLWRHIEEQRQALSANQFRNACRKQYL 573
Query: 719 EEQRFYEVTKLRSQFKQVLGDSGL 742
R E + Q QV+ + GL
Sbjct: 574 NYLRVREWQDIYRQLTQVVKELGL 597
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing [Unknown function, Enzymes of unknown specificity]. Length = 1283 |
| >gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Score = 280 bits (719), Expect = 4e-77
Identities = 146/361 (40%), Positives = 215/361 (59%), Gaps = 17/361 (4%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
E+ D L YD +++DE HER L+ DF+LG +K LL ++K+I+ SATI+ E F +
Sbjct: 177 EIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSRH 236
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVE-LDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
FN A II+V GR YP+++ Y PIVE D T+ ++L I +D+ R GD+
Sbjct: 237 FNN-APIIEVSGRTYPVEVRYRPIVEEADDTERDQLQA-----IFDAVDE-LGREGPGDI 289
Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488
LIFMSG EI A + N + +LPL++ LS EQ+RVF R+ +++TN
Sbjct: 290 LIFMSGEREIRDTADALNKLNLRHTE--ILPLYARLSNSEQNRVFQ--SHSGRRIVLATN 345
Query: 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCY 548
+AETS+T+ GI++V+D G + Y K+ L IS+ASA QRKGR GR G+C
Sbjct: 346 VAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICI 405
Query: 549 RLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSL 608
RLYSE+ + E++ PEI R ++ S++L + +GLGD+ FPF+EAP NI+ VR L
Sbjct: 406 RLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLL 465
Query: 609 TQHGAIDSKE-----RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663
+ GAI + E ++T LGR L+ LPVD L +M++ + V+ + + LS+Q
Sbjct: 466 EELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCVREVMIITSALSIQD 525
Query: 664 P 664
P
Sbjct: 526 P 526
|
Length = 1294 |
| >gnl|CDD|233660 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Score = 221 bits (564), Expect = 1e-59
Identities = 117/357 (32%), Positives = 184/357 (51%), Gaps = 22/357 (6%)
Query: 313 ADNFLSSYDVLVLDEIHERHLHGD----FLLGVIKCLLHSTAEVKIILMSATINIELFHT 368
D L L+ DE HER L D L V L ++KI+ MSAT++ E +
Sbjct: 107 DDPELDGVGALIFDEFHERSLDADLGLALALDVQSSL---REDLKILAMSATLDGERLSS 163
Query: 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428
A +++ GR +P+++ Y P ++L+ + + +E G +
Sbjct: 164 LLPD-APVVESEGRSFPVEIRYLP-----LRGDQRLEDAVSRAVEHAL-----ASETGSI 212
Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVL-PLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
L+F+ G +EI R ++ E+ +++ PL+ LSL QDR P+G RK +++T
Sbjct: 213 LVFLPGQAEIR---RVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLAT 269
Query: 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
NIAETS+TI+GIR V+DSG + +D ++ L+ IS+ASA QR GRAGR PGVC
Sbjct: 270 NIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRLEPGVC 329
Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
YRL+SEEQ+ L PEI + + L L L G D +L+APP+ + ++ +
Sbjct: 330 YRLWSEEQHQRLPAQDEPEILQADLSGLALELAQWGAKDPSDLRWLDAPPSVALAAARQL 389
Query: 608 LTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664
L + GA+D++ R+T+ G+ ++ L L ML+ LAA+L +
Sbjct: 390 LQRLGALDAQGRLTAHGKAMAALGCHPRLAAMLLSAHSTGLAALACDLAALLEERGL 446
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing [Unknown function, Enzymes of unknown specificity]. Length = 819 |
| >gnl|CDD|236950 PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Score = 219 bits (561), Expect = 3e-59
Identities = 122/349 (34%), Positives = 182/349 (52%), Gaps = 22/349 (6%)
Query: 317 LSSYDVLVLDEIHERHLHGD----FLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNR 372
LS +++LDE HER L D LL V + L ++K+++MSAT++ +
Sbjct: 114 LSGVGLVILDEFHERSLQADLALALLLDVQQGL---RDDLKLLIMSATLDNDRLQQLLPD 170
Query: 373 IAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFM 432
A +I GR +P++ Y P+ ++ D ++ R E G +L+F+
Sbjct: 171 -APVIVSEGRSFPVERRYQPL-----PAHQRFDEAVARATAELL-----RQESGSLLLFL 219
Query: 433 SGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAET 492
G+ EI + Q + + ++ PL+ LSL EQ + AP G RK +++TNIAET
Sbjct: 220 PGVGEIQRV--QEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAET 277
Query: 493 SITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYS 552
S+TI+GIR VVDSG + +D ++ L IS+AS QR GRAGR PG+C LYS
Sbjct: 278 SLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLYS 337
Query: 553 EEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHG 612
+EQ A S PEI + LLL L+ G D + +L+ PPA + ++ R L Q G
Sbjct: 338 KEQAERAAAQSEPEILHSDLSGLLLELLQWGCHDPAQLSWLDQPPAAALAAAKRLLQQLG 397
Query: 613 AIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMF--HQIDTVLSLAAVL 659
A+D + R+T+ GR ++ L D L MLV + T LAA+L
Sbjct: 398 ALDGQGRLTARGRKMAALGNDPRLAAMLVAAKEDDEAALATAAKLAAIL 446
|
Length = 812 |
| >gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 6e-31
Identities = 49/124 (39%), Positives = 78/124 (62%), Gaps = 3/124 (2%)
Query: 19 FKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA 78
+ + + + I E ++ LPV + EI+ + + +VVII G+TG GK+TQ+PQ+L++
Sbjct: 30 MDARSRSANVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEE 89
Query: 79 GF---QRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGL 135
G +I CTQPRR+A S+++RVA E + VGY IRFE +T+I +T+G+
Sbjct: 90 GLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKVSPRTRIKVMTDGI 149
Query: 136 LLRQ 139
LLR+
Sbjct: 150 LLRE 153
|
Length = 845 |
| >gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 1e-27
Identities = 47/127 (37%), Positives = 74/127 (58%), Gaps = 1/127 (0%)
Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLG-DVRKFPFLEAPPAE 867
RTGPG+CYRLYSEE + E++ PEI R + L+L L +G+G D+ FPFL+ PP
Sbjct: 374 RTGPGICYRLYSEEDFLAFPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPFPFLDPPPEA 433
Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
I++++ L + GA+D ++T LG+ +S LP+D L +ML+ + + L
Sbjct: 434 AIQAALTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASML 493
Query: 928 NFGAIDS 934
+ +S
Sbjct: 494 SEQDRES 500
|
Length = 845 |
| >gnl|CDD|218070 pfam04408, HA2, Helicase associated domain (HA2) | Back alignment and domain information |
|---|
Score = 88.8 bits (221), Expect = 4e-21
Identities = 34/91 (37%), Positives = 57/91 (62%)
Query: 603 SSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQ 662
++ L + GA+D +T LGR +++LP+D LGKML+ + F +D +L++AA+LSV
Sbjct: 1 KALELLYELGALDDDGELTPLGRQMAELPLDPRLGKMLLLSAEFGCLDEILTIAAMLSVP 60
Query: 663 SPFTNRAFRDPDCETARKELESNHGDPLTVL 693
SPF ++ + + AR++ S D LT+L
Sbjct: 61 SPFYRPKEKEEEADAARRKFASAESDHLTLL 91
|
This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding. Length = 91 |
| >gnl|CDD|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Score = 99.1 bits (247), Expect = 1e-20
Identities = 50/132 (37%), Positives = 78/132 (59%), Gaps = 5/132 (3%)
Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
R PG+C RLYSEE ++ E++ PEI R ++ S++L ++ + LGD+ FPF+EAP
Sbjct: 391 RVAPGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMLALRLGDIAAFPFIEAPDPRA 450
Query: 869 IESSVRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDL 925
I R L + GA+D E ++T +GR L+ LPVD L +ML+ + +L++
Sbjct: 451 IRDGFRLLEELGALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIAS 510
Query: 926 ALNFGAIDSKER 937
AL+ D +ER
Sbjct: 511 ALSIQ--DPRER 520
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing [Unknown function, Enzymes of unknown specificity]. Length = 1283 |
| >gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 1e-19
Identities = 45/106 (42%), Positives = 67/106 (63%), Gaps = 5/106 (4%)
Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
R G+C RLYSE+ + E++ PEI R ++ S++L + +GLGD+ FPF+EAP N
Sbjct: 398 RVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRN 457
Query: 869 IESSVRSLTQHGAIDSKE-----RVTTLGRFLSDLPVDIPLGKMLV 909
I+ VR L + GAI + E ++T LGR L+ LPVD L +M++
Sbjct: 458 IQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVL 503
|
Length = 1294 |
| >gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Score = 94.4 bits (235), Expect = 3e-19
Identities = 40/104 (38%), Positives = 68/104 (65%), Gaps = 3/104 (2%)
Query: 37 SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
+LPV+Q KQ+I++ + +VVI+AG+TG GK+TQ+P+ ++ G I TQPRR+A
Sbjct: 72 NLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAA 131
Query: 94 ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
+++ R+A E ++ VGY++RF + T + +T+G+LL
Sbjct: 132 RTVANRIAEELETELGGCVGYKVRFNDQVSDNTMVKLMTDGILL 175
|
Length = 1294 |
| >gnl|CDD|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 4e-18
Identities = 38/104 (36%), Positives = 66/104 (63%), Gaps = 3/104 (2%)
Query: 37 SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQR---IACTQPRRIAC 93
+LPV+ +++I + + + +VVIIAG+TG GK+TQ+P+ ++ G I TQPRR+A
Sbjct: 65 NLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAA 124
Query: 94 ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLL 137
++++R+A E + VGY++RF T + +T+G+LL
Sbjct: 125 RTVAQRIAEELGTPLGEKVGYKVRFHDQVSSNTLVKLMTDGILL 168
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing [Unknown function, Enzymes of unknown specificity]. Length = 1283 |
| >gnl|CDD|214852 smart00847, HA2, Helicase associated domain (HA2) Add an annotation | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 9e-17
Identities = 30/82 (36%), Positives = 47/82 (57%), Gaps = 2/82 (2%)
Query: 612 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFR 671
GA+D R+T LGR +++LP+D L KML+ + F +D +L++ A+LSV P +
Sbjct: 3 GALDDDGRLTPLGRKMAELPLDPRLAKMLLAAAEFGCLDEILTIVAMLSVGDPRPKE--K 60
Query: 672 DPDCETARKELESNHGDPLTVL 693
D + AR+ D LT+L
Sbjct: 61 REDADAARRRFADPESDHLTLL 82
|
This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding. Length = 82 |
| >gnl|CDD|236950 PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 3e-15
Identities = 42/108 (38%), Positives = 57/108 (52%), Gaps = 4/108 (3%)
Query: 805 RLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 864
RLE PG+C LYS+EQ A S PEI + LLL L+ G D + +L+ P
Sbjct: 326 RLE----PGICLHLYSKEQAERAAAQSEPEILHSDLSGLLLELLQWGCHDPAQLSWLDQP 381
Query: 865 PAENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGS 912
PA + ++ R L Q GA+D + R+T GR ++ L D L MLV
Sbjct: 382 PAAALAAAKRLLQQLGALDGQGRLTARGRKMAALGNDPRLAAMLVAAK 429
|
Length = 812 |
| >gnl|CDD|177443 PHA02653, PHA02653, RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 4e-15
Identities = 59/251 (23%), Positives = 105/251 (41%), Gaps = 38/251 (15%)
Query: 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIK---CLLHSTAEVKIILMSATI--NIELFHTY 369
N L Y +++DE+HE GD ++ V + + S + LM+AT+ + + +
Sbjct: 287 NKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDKIRS-----LFLMTATLEDDRDRIKEF 341
Query: 370 FNRIAKIIKVPG-RLYPIQLEYHPIVELDRTKSEKLDPGPYIR-----ILSIIDKKYPRT 423
F A + +PG L+PI Y + K + YI I++ + K P
Sbjct: 342 FPNPA-FVHIPGGTLFPISEVY------VKNKYNPKNKRAYIEEEKKNIVTALKKYTPPK 394
Query: 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHS-TLSLEEQDRVFHYAPEGLRK 482
++F++ +S+ + ++ +I+ H +++E +
Sbjct: 395 GSS-GIVFVASVSQCEEYKKYLEKRLPIYDFYII---HGKVPNIDE---ILEKVYSSKNP 447
Query: 483 CI-VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGR 541
I +ST E+S+TI V D+G+V + +E +ISK+ QRKGR GR
Sbjct: 448 SIIISTPYLESSVTIRNATHVYDTGRV------YVPEPFGGKEMFISKSMRTQRKGRVGR 501
Query: 542 TGPGVCYRLYS 552
PG Y
Sbjct: 502 VSPGTYVYFYD 512
|
Length = 675 |
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 7e-15
Identities = 28/93 (30%), Positives = 39/93 (41%), Gaps = 18/93 (19%)
Query: 451 KSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKE 510
K G V LH LS EE++ + G K +V+T++AE + + G+ V+
Sbjct: 8 KELGIKVARLHGGLSQEEREEILDKFNNGKIKVLVATDVAERGLDLPGVDLVIIYD---- 63
Query: 511 MSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG 543
S AS QR GRAGR G
Sbjct: 64 --------------LPWSPASYIQRIGRAGRAG 82
|
Length = 82 |
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 6e-13
Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 18/93 (19%)
Query: 451 KSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKE 510
+ G V LH LS EE++ + G K +V+T++A I + + V++
Sbjct: 4 RKPGIKVARLHGGLSQEEREEILEDFRNGKSKVLVATDVAGRGIDLPDVNLVIN------ 57
Query: 511 MSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG 543
YD + AS QR GRAGR G
Sbjct: 58 --YD----------LPWNPASYIQRIGRAGRAG 78
|
The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Length = 78 |
| >gnl|CDD|233660 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Score = 71.7 bits (176), Expect = 2e-12
Identities = 36/103 (34%), Positives = 56/103 (54%)
Query: 809 RTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868
R PGVCYRL+SEEQ+ L PEI + + L L L G D +L+APP+
Sbjct: 323 RLEPGVCYRLWSEEQHQRLPAQDEPEILQADLSGLALELAQWGAKDPSDLRWLDAPPSVA 382
Query: 869 IESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFG 911
+ ++ + L + GA+D++ R+T G+ ++ L L ML+
Sbjct: 383 LAAARQLLQRLGALDAQGRLTAHGKAMAALGCHPRLAAMLLSA 425
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing [Unknown function, Enzymes of unknown specificity]. Length = 819 |
| >gnl|CDD|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 6e-12
Identities = 31/58 (53%), Positives = 41/58 (70%)
Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
D FLS YD +++DE HER L+ DFLLG +K LL ++KII+ SATI+ E F +FN
Sbjct: 174 DRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDLKIIITSATIDPERFSRHFN 231
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing [Unknown function, Enzymes of unknown specificity]. Length = 1283 |
| >gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 9e-12
Identities = 28/59 (47%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAE-VKIILMSATINIELFHTYFN 1176
D LS Y V+++DE HER L+ D LLG++K LL + +K+I+MSAT++ E F YF
Sbjct: 157 DPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATLDAERFSAYFG 215
|
Length = 845 |
| >gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 1e-10
Identities = 27/58 (46%), Positives = 39/58 (67%)
Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
D L YD +++DE HER L+ DF+LG +K LL ++K+I+ SATI+ E F +FN
Sbjct: 181 DRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSRHFN 238
|
Length = 1294 |
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-10
Identities = 33/126 (26%), Positives = 48/126 (38%), Gaps = 24/126 (19%)
Query: 426 GDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485
G VLIF + + ++ G V LH S EE++ V EG +V
Sbjct: 29 GKVLIFCPSKKMLDELAELLRKP-----GIKVAALHGDGSQEEREEVLKDFREGEIVVLV 83
Query: 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-P 544
+T++ I + + V++ YD S +S QR GRAGR G
Sbjct: 84 ATDVIARGIDLPNVSVVIN--------YD----------LPWSPSSYLQRIGRAGRAGQK 125
Query: 545 GVCYRL 550
G L
Sbjct: 126 GTAILL 131
|
Length = 131 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 7e-10
Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 12/94 (12%)
Query: 55 RVVIIAGDTGCGKSTQIPQYLVQAGFQ----RIACTQPRRIACISLSKRVAYETLSQYSN 110
R V++A TG GK+ +++ ++ P R +++R+ L
Sbjct: 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLK--ELFGEGI 58
Query: 111 LVGYQIRFEKHR------REKTKIVFITEGLLLR 138
VGY I + KT IV T G LL
Sbjct: 59 KVGYLIGGTSIKQQEKLLSGKTDIVVGTPGRLLD 92
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|218070 pfam04408, HA2, Helicase associated domain (HA2) | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 3e-09
Identities = 19/53 (35%), Positives = 33/53 (62%)
Query: 871 SSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 923
++ L + GA+D +T LGR +++LP+D LGKML+ + F +D +L +
Sbjct: 1 KALELLYELGALDDDGELTPLGRQMAELPLDPRLGKMLLLSAEFGCLDEILTI 53
|
This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding. Length = 91 |
| >gnl|CDD|233660 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 4e-09
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 5/111 (4%)
Query: 38 LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF--QRIACTQPRRIACIS 95
LP+ + D + V++ G GKST +P L+ A +I +PRR+A S
Sbjct: 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARS 60
Query: 96 LSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLR---QDSGL 143
++R+A + VGY++R E +T++ +TEG+L R D L
Sbjct: 61 AAQRLASQLGEAVGQTVGYRVRGENKVSRRTRLEVVTEGILTRMIQDDPEL 111
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing [Unknown function, Enzymes of unknown specificity]. Length = 819 |
| >gnl|CDD|214852 smart00847, HA2, Helicase associated domain (HA2) Add an annotation | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 6e-09
Identities = 23/73 (31%), Positives = 38/73 (52%)
Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFVHHSEEEEEE 1089
GA+D R+T LGR +++LP+D L KML+ + F +D +L + L+ +E+ E
Sbjct: 3 GALDDDGRLTPLGRKMAELPLDPRLAKMLLAAAEFGCLDEILTIVAMLSVGDPRPKEKRE 62
Query: 1090 EAGERLESMDANE 1102
+A E
Sbjct: 63 DADAARRRFADPE 75
|
This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding. Length = 82 |
| >gnl|CDD|218070 pfam04408, HA2, Helicase associated domain (HA2) | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 7e-09
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
GA+D +T LGR +++LP+D LGKML+ + F +D +L + L+ F E+
Sbjct: 10 GALDDDGELTPLGRQMAELPLDPRLGKMLLLSAEFGCLDEILTIAAMLSVPSPFYRPKEK 69
Query: 1086 EEEEE 1090
EEE +
Sbjct: 70 EEEAD 74
|
This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding. Length = 91 |
| >gnl|CDD|218070 pfam04408, HA2, Helicase associated domain (HA2) | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 9e-09
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 930 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 973
GA+D +T LGR +++LP+D LGKML+ + F +D +L +
Sbjct: 10 GALDDDGELTPLGRQMAELPLDPRLGKMLLLSAEFGCLDEILTI 53
|
This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding. Length = 91 |
| >gnl|CDD|218070 pfam04408, HA2, Helicase associated domain (HA2) | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 9e-09
Identities = 18/44 (40%), Positives = 29/44 (65%)
Query: 980 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLL 1023
GA+D +T LGR +++LP+D LGKML+ + F +D +L +
Sbjct: 10 GALDDDGELTPLGRQMAELPLDPRLGKMLLLSAEFGCLDEILTI 53
|
This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding. Length = 91 |
| >gnl|CDD|214852 smart00847, HA2, Helicase associated domain (HA2) Add an annotation | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 4e-08
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 930 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML----LLDLALNFGAIDSK 985
GA+D R+T LGR +++LP+D L KML+ + F +D +L +L + +
Sbjct: 3 GALDDDGRLTPLGRKMAELPLDPRLAKMLLAAAEFGCLDEILTIVAMLSVGDPRPKEKRE 62
Query: 986 ERVTSLGRF 994
+ + RF
Sbjct: 63 DADAARRRF 71
|
This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding. Length = 82 |
| >gnl|CDD|214852 smart00847, HA2, Helicase associated domain (HA2) Add an annotation | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 4e-08
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 980 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML----LLDLALNFGAIDSK 1035
GA+D R+T LGR +++LP+D L KML+ + F +D +L +L + +
Sbjct: 3 GALDDDGRLTPLGRKMAELPLDPRLAKMLLAAAEFGCLDEILTIVAMLSVGDPRPKEKRE 62
Query: 1036 ERVTSLGRF 1044
+ + RF
Sbjct: 63 DADAARRRF 71
|
This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding. Length = 82 |
| >gnl|CDD|219532 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharide-binding (OB)-fold | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 4e-08
Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 33/119 (27%)
Query: 1190 SHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVL 1249
S D +++ L +GL+P VA + K+ V +HP SV
Sbjct: 23 SSNDYELIRKALCAGLFPNVARLVDEKGE------YKTLKEGQPVFIHPSSV-------- 68
Query: 1250 RISEDDIVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSS 1308
+ +VY L+ET+K ++ + + L L
Sbjct: 69 -------------------LFGKKPPEWVVYHELVETTKEYMRDVTAIDPEWLLELAPH 108
|
This family is found towards the C-terminus of the DEAD-box helicases (pfam00270). In these helicases it is apparently always found in association with pfam04408. There do seem to be a couple of instances where it occurs by itself - . The structure PDB:3i4u adopts an OB-fold. helicases (pfam00270). In these helicases it is apparently always found in association with pfam04408. This C-terminal domain of the yeast helicase contains an oligonucleotide/oligosaccharide-binding (OB)-fold which seems to be placed at the entrance of the putative nucleic acid cavity. It also constitutes the binding site for the G-patch-containing domain of Pfa1p. When found on DEAH/RHA helicases, this domain is central to the regulation of the helicase activity through its binding of both RNA and G-patch domain proteins. Length = 109 |
| >gnl|CDD|214852 smart00847, HA2, Helicase associated domain (HA2) Add an annotation | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 8e-08
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 4/69 (5%)
Query: 880 GAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML----LLDLALNFGAIDSK 935
GA+D R+T LGR +++LP+D L KML+ + F +D +L +L + +
Sbjct: 3 GALDDDGRLTPLGRKMAELPLDPRLAKMLLAAAEFGCLDEILTIVAMLSVGDPRPKEKRE 62
Query: 936 ERVTSLGRF 944
+ + RF
Sbjct: 63 DADAARRRF 71
|
This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding. Length = 82 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 11/107 (10%)
Query: 43 YKQEIIDTVLK-ERVVIIAGDTGCGKSTQIPQYLVQAGFQ----RIACTQPRRIACISLS 97
Y++E I+ +L R VI+A TG GK+ ++A + R+ P R +
Sbjct: 12 YQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGGRVLVLVPTRELAEQWA 71
Query: 98 KRVAYETLSQYSNLVGY------QIRFEKHRREKTKIVFITEGLLLR 138
+ + S +VG + + K KT I+ T G LL
Sbjct: 72 EELKKLGPSLGLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLD 118
|
Length = 201 |
| >gnl|CDD|236950 PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 5e-07
Identities = 35/105 (33%), Positives = 58/105 (55%), Gaps = 2/105 (1%)
Query: 36 NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIP-QYLVQAGFQ-RIACTQPRRIAC 93
+SLPVA E++ + V++ TG GKST +P Q L G +I +PRR+A
Sbjct: 2 SSLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAA 61
Query: 94 ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLR 138
++++R+A + + VGY++R E T++ +TEG+L R
Sbjct: 62 RNVAQRLAEQLGEKPGETVGYRMRAESKVGPNTRLEVVTEGILTR 106
|
Length = 812 |
| >gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 7e-06
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 980 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDS 1034
GA+D ++T LG+ +S LP+D L +ML+ + + L+ +S
Sbjct: 446 GALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASMLSEQDRES 500
|
Length = 845 |
| >gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 5e-05
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 230 TDNFLSSYDILILDEVHERHLYGDFLLG 257
D LS Y ++I+DE HER L D LLG
Sbjct: 156 NDPLLSGYSVVIIDEAHERSLNTDILLG 183
|
Length = 845 |
| >gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 8e-05
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNF 1079
GA+D ++T LG+ +S LP+D L +ML+ + + L+
Sbjct: 446 GALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASMLSE 495
|
Length = 845 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 8e-04
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATI 361
L D+L+LDE H G LLG+ L + +++L+SAT
Sbjct: 100 SLKKLDLLILDEAHRLLNQGFGLLGLKILLKLP-KDRQVLLLSATP 144
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 8e-04
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 1121 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATI 1166
L D+L+LDE H G LLG+ L + +++L+SAT
Sbjct: 100 SLKKLDLLILDEAHRLLNQGFGLLGLKILLKLP-KDRQVLLLSATP 144
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 0.001
Identities = 19/34 (55%), Positives = 22/34 (64%)
Query: 231 DNFLSSYDILILDEVHERHLYGDFLLGVISPPLH 264
D FLS YD +I+DE HER L DFLLG + L
Sbjct: 174 DRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLP 207
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing [Unknown function, Enzymes of unknown specificity]. Length = 1283 |
| >gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 0.001
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 227 QVATDNFLSSYDILILDEVHERHLYGDFLLG 257
++ D L YD +I+DE HER L DF+LG
Sbjct: 177 EIQQDRLLMQYDTIIIDEAHERSLNIDFILG 207
|
Length = 1294 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 7/78 (8%)
Query: 1121 FLSSYDVLVLDEIHER--HLHGDFLLGVIKCLLHSTAEVKIILMSATI--NIELFHTYFN 1176
LS+ D+++LDE H GD L ++K L + V+++L+SAT IE F
Sbjct: 126 SLSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKN---VQLLLLSATPPEEIENLLELFL 182
Query: 1177 RIAKDLLSGSTARSHKDV 1194
+ G T +
Sbjct: 183 NDPVFIDVGFTPLEPIEQ 200
|
Length = 201 |
| >gnl|CDD|233660 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.003
Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 1118 ADNFLSSYDVLVLDEIHERHLHGD----FLLGVIKCLLHSTAEVKIILMSATIN 1167
D L L+ DE HER L D L V L ++KI+ MSAT++
Sbjct: 107 DDPELDGVGALIFDEFHERSLDADLGLALALDVQSSL---REDLKILAMSATLD 157
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing [Unknown function, Enzymes of unknown specificity]. Length = 819 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.004
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 316 FLSSYDVLVLDEIHER--HLHGDFLLGVIKCLLHSTAEVKIILMSATI--NIELFHTYFN 371
LS+ D+++LDE H GD L ++K L + V+++L+SAT IE F
Sbjct: 126 SLSNVDLVILDEAHRLLDGGFGDQLEKLLKLLPKN---VQLLLLSATPPEEIENLLELFL 182
Query: 372 RIAKIIKV 379
I V
Sbjct: 183 NDPVFIDV 190
|
Length = 201 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1417 | |||
| KOG0922|consensus | 674 | 100.0 | ||
| KOG0923|consensus | 902 | 100.0 | ||
| KOG0924|consensus | 1042 | 100.0 | ||
| KOG0920|consensus | 924 | 100.0 | ||
| KOG0925|consensus | 699 | 100.0 | ||
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 100.0 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 100.0 | |
| KOG0926|consensus | 1172 | 100.0 | ||
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 100.0 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 100.0 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 100.0 | |
| KOG0921|consensus | 1282 | 100.0 | ||
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 100.0 | |
| KOG0922|consensus | 674 | 100.0 | ||
| KOG0924|consensus | 1042 | 100.0 | ||
| KOG0925|consensus | 699 | 100.0 | ||
| KOG0923|consensus | 902 | 100.0 | ||
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 100.0 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 100.0 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 100.0 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 100.0 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 100.0 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 100.0 | |
| KOG0330|consensus | 476 | 100.0 | ||
| KOG0926|consensus | 1172 | 100.0 | ||
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| KOG0331|consensus | 519 | 100.0 | ||
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 100.0 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 100.0 | |
| PTZ00424 | 401 | helicase 45; Provisional | 99.98 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 99.98 | |
| KOG0345|consensus | 567 | 99.98 | ||
| KOG0342|consensus | 543 | 99.97 | ||
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 99.97 | |
| KOG0920|consensus | 924 | 99.97 | ||
| KOG0333|consensus | 673 | 99.97 | ||
| KOG0343|consensus | 758 | 99.97 | ||
| KOG0340|consensus | 442 | 99.97 | ||
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 99.97 | |
| KOG0338|consensus | 691 | 99.97 | ||
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 99.97 | |
| KOG0328|consensus | 400 | 99.96 | ||
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 99.96 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 99.96 | |
| KOG0952|consensus | 1230 | 99.96 | ||
| KOG0332|consensus | 477 | 99.96 | ||
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 99.96 | |
| KOG0335|consensus | 482 | 99.96 | ||
| KOG0336|consensus | 629 | 99.96 | ||
| KOG0326|consensus | 459 | 99.95 | ||
| KOG0348|consensus | 708 | 99.95 | ||
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 99.95 | |
| KOG0347|consensus | 731 | 99.95 | ||
| KOG0339|consensus | 731 | 99.95 | ||
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 99.95 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 99.95 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.94 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 99.94 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.94 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.94 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.94 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.94 | |
| KOG0951|consensus | 1674 | 99.93 | ||
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.93 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 99.93 | |
| KOG0350|consensus | 620 | 99.93 | ||
| KOG0341|consensus | 610 | 99.92 | ||
| KOG0334|consensus | 997 | 99.92 | ||
| KOG4284|consensus | 980 | 99.92 | ||
| KOG0346|consensus | 569 | 99.91 | ||
| KOG0921|consensus | 1282 | 99.91 | ||
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.91 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.91 | |
| KOG0327|consensus | 397 | 99.91 | ||
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.9 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.9 | |
| KOG0354|consensus | 746 | 99.89 | ||
| KOG0948|consensus | 1041 | 99.89 | ||
| KOG0344|consensus | 593 | 99.89 | ||
| PRK13766 | 773 | Hef nuclease; Provisional | 99.88 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.88 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.88 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.87 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 99.87 | |
| KOG0947|consensus | 1248 | 99.87 | ||
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.87 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.87 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.86 | |
| KOG0337|consensus | 529 | 99.86 | ||
| PRK09694 | 878 | helicase Cas3; Provisional | 99.85 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.85 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.84 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.84 | |
| KOG0950|consensus | 1008 | 99.83 | ||
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.82 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.82 | |
| KOG0352|consensus | 641 | 99.82 | ||
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.81 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.81 | |
| KOG0351|consensus | 941 | 99.77 | ||
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.77 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.74 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.73 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.72 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.71 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.69 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.66 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.64 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.63 | |
| KOG0329|consensus | 387 | 99.6 | ||
| PF04408 | 102 | HA2: Helicase associated domain (HA2); InterPro: I | 99.57 | |
| KOG0353|consensus | 695 | 99.56 | ||
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.54 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.54 | |
| KOG0349|consensus | 725 | 99.51 | ||
| PF04408 | 102 | HA2: Helicase associated domain (HA2); InterPro: I | 99.51 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.5 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 99.47 | |
| smart00847 | 92 | HA2 Helicase associated domain (HA2) Add an annota | 99.46 | |
| KOG0949|consensus | 1330 | 99.42 | ||
| smart00847 | 92 | HA2 Helicase associated domain (HA2) Add an annota | 99.39 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 99.38 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 99.36 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.33 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 99.32 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 99.32 | |
| KOG0953|consensus | 700 | 99.31 | ||
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.31 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 99.26 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 99.25 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 99.23 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 99.21 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 99.2 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.2 | |
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 99.2 | |
| KOG4150|consensus | 1034 | 99.18 | ||
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.15 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.13 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 99.1 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 99.09 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 99.08 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 99.07 | |
| PF07717 | 114 | OB_NTP_bind: Oligonucleotide/oligosaccharide-bindi | 99.02 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 99.0 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 98.98 | |
| KOG0951|consensus | 1674 | 98.91 | ||
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 98.9 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 98.74 | |
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 98.71 | |
| KOG1123|consensus | 776 | 98.66 | ||
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 98.61 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 98.55 | |
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 98.4 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 98.31 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 98.24 | |
| KOG0385|consensus | 971 | 98.18 | ||
| KOG0387|consensus | 923 | 98.15 | ||
| KOG0384|consensus | 1373 | 97.85 | ||
| COG4889 | 1518 | Predicted helicase [General function prediction on | 97.82 | |
| KOG0390|consensus | 776 | 97.76 | ||
| KOG0392|consensus | 1549 | 97.73 | ||
| PF13245 | 76 | AAA_19: Part of AAA domain | 97.35 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 97.28 | |
| KOG1000|consensus | 689 | 97.24 | ||
| PRK01172 | 674 | ski2-like helicase; Provisional | 97.11 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 97.1 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 96.76 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 96.74 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 96.57 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 96.55 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 96.4 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 96.39 | |
| KOG1803|consensus | 649 | 96.38 | ||
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 96.34 | |
| KOG0952|consensus | 1230 | 96.25 | ||
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 96.22 | |
| PRK06526 | 254 | transposase; Provisional | 96.15 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 96.11 | |
| PF00176 | 299 | SNF2_N: SNF2 family N-terminal domain; InterPro: I | 96.07 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 95.87 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 95.87 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 95.59 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 95.51 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 95.38 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 95.34 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 95.33 | |
| TIGR00376 | 637 | DNA helicase, putative. The gene product may repre | 95.31 | |
| PF00580 | 315 | UvrD-helicase: UvrD/REP helicase N-terminal domain | 95.31 | |
| COG0610 | 962 | Type I site-specific restriction-modification syst | 95.28 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 95.27 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 95.23 | |
| PRK08181 | 269 | transposase; Validated | 95.17 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 95.15 | |
| KOG0391|consensus | 1958 | 94.64 | ||
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 94.55 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 94.52 | |
| KOG1802|consensus | 935 | 94.46 | ||
| smart00488 | 289 | DEXDc2 DEAD-like helicases superfamily. | 94.37 | |
| smart00489 | 289 | DEXDc3 DEAD-like helicases superfamily. | 94.37 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 94.34 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 94.24 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 94.21 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 94.13 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 94.06 | |
| PRK15483 | 986 | type III restriction-modification system StyLTI en | 94.0 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 93.82 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 93.72 | |
| KOG2340|consensus | 698 | 93.68 | ||
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 93.6 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 93.6 | |
| PF07517 | 266 | SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011 | 93.6 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 93.55 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 93.54 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 93.37 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 93.27 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 93.12 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 93.03 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 92.98 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 92.97 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 92.9 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 92.87 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 92.81 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 92.79 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 92.73 | |
| KOG0389|consensus | 941 | 92.71 | ||
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 92.66 | |
| PRK08116 | 268 | hypothetical protein; Validated | 92.54 | |
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 92.47 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 92.47 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 92.33 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 92.32 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 92.27 | |
| PRK08727 | 233 | hypothetical protein; Validated | 92.22 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 92.14 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 92.02 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 92.02 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 91.99 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 91.83 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 91.78 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 91.78 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 91.7 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 91.62 | |
| PRK13833 | 323 | conjugal transfer protein TrbB; Provisional | 91.61 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 91.61 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 91.59 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 91.37 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 91.24 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 91.22 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 91.2 | |
| PRK13894 | 319 | conjugal transfer ATPase TrbB; Provisional | 91.15 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 91.11 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 91.1 | |
| COG0466 | 782 | Lon ATP-dependent Lon protease, bacterial type [Po | 91.09 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 91.06 | |
| PRK12377 | 248 | putative replication protein; Provisional | 90.97 | |
| PRK13900 | 332 | type IV secretion system ATPase VirB11; Provisiona | 90.89 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 90.74 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 90.62 | |
| PRK13851 | 344 | type IV secretion system protein VirB11; Provision | 90.61 | |
| PF05127 | 177 | Helicase_RecD: Helicase; InterPro: IPR007807 This | 90.59 | |
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 90.53 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 90.34 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 90.19 | |
| PRK14729 | 300 | miaA tRNA delta(2)-isopentenylpyrophosphate transf | 90.19 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 90.07 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 90.05 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 89.99 | |
| KOG0388|consensus | 1185 | 89.99 | ||
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 89.91 | |
| PF02367 | 123 | UPF0079: Uncharacterised P-loop hydrolase UPF0079; | 89.76 | |
| COG2812 | 515 | DnaX DNA polymerase III, gamma/tau subunits [DNA r | 89.61 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 89.52 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 89.47 | |
| TIGR02524 | 358 | dot_icm_DotB Dot/Icm secretion system ATPase DotB. | 89.38 | |
| PHA03333 | 752 | putative ATPase subunit of terminase; Provisional | 88.9 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 88.81 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 88.54 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 88.5 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 88.45 | |
| KOG0989|consensus | 346 | 88.26 | ||
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 88.18 | |
| PRK11054 | 684 | helD DNA helicase IV; Provisional | 88.16 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 88.14 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 88.1 | |
| COG1444 | 758 | Predicted P-loop ATPase fused to an acetyltransfer | 88.02 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 87.95 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 87.9 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 87.88 | |
| PRK14953 | 486 | DNA polymerase III subunits gamma and tau; Provisi | 87.86 | |
| PRK05973 | 237 | replicative DNA helicase; Provisional | 87.84 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 87.84 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 87.77 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 87.75 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 87.61 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 87.55 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 87.54 | |
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 87.49 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 87.48 | |
| PRK10919 | 672 | ATP-dependent DNA helicase Rep; Provisional | 87.29 | |
| PF13872 | 303 | AAA_34: P-loop containing NTP hydrolase pore-1 | 87.26 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 87.16 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 87.0 | |
| COG4962 | 355 | CpaF Flp pilus assembly protein, ATPase CpaF [Intr | 86.84 | |
| PRK10436 | 462 | hypothetical protein; Provisional | 86.76 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 86.68 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 86.67 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 86.65 | |
| TIGR00174 | 287 | miaA tRNA isopentenyltransferase (miaA). Catalyzes | 86.61 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 86.61 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 86.55 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 86.54 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 86.5 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 86.26 | |
| COG0324 | 308 | MiaA tRNA delta(2)-isopentenylpyrophosphate transf | 86.18 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 86.1 | |
| TIGR00150 | 133 | HI0065_YjeE ATPase, YjeE family. Members of this f | 86.01 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 85.78 | |
| KOG1131|consensus | 755 | 85.74 | ||
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 85.5 | |
| PF13173 | 128 | AAA_14: AAA domain | 85.47 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 85.43 | |
| TIGR02525 | 372 | plasmid_TraJ plasmid transfer ATPase TraJ. Members | 85.25 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 85.14 | |
| PRK14970 | 367 | DNA polymerase III subunits gamma and tau; Provisi | 84.99 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 84.97 | |
| PF06745 | 226 | KaiC: KaiC; InterPro: IPR014774 This entry represe | 84.69 | |
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 84.64 | |
| PRK14971 | 614 | DNA polymerase III subunits gamma and tau; Provisi | 84.49 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 84.06 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 83.99 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 83.98 | |
| TIGR02538 | 564 | type_IV_pilB type IV-A pilus assembly ATPase PilB. | 83.84 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 83.79 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 83.79 | |
| KOG2228|consensus | 408 | 83.76 | ||
| PF12846 | 304 | AAA_10: AAA-like domain | 83.72 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 83.72 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 83.61 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 83.53 | |
| PF12340 | 229 | DUF3638: Protein of unknown function (DUF3638); In | 83.49 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 83.32 | |
| TIGR02533 | 486 | type_II_gspE general secretory pathway protein E. | 83.29 | |
| PHA02244 | 383 | ATPase-like protein | 83.28 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 83.27 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 83.2 | |
| PF12775 | 272 | AAA_7: P-loop containing dynein motor region D3; P | 83.11 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 82.95 | |
| COG5008 | 375 | PilU Tfp pilus assembly protein, ATPase PilU [Cell | 82.82 | |
| TIGR01650 | 327 | PD_CobS cobaltochelatase, CobS subunit. This model | 82.81 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 82.66 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 82.6 | |
| PRK13764 | 602 | ATPase; Provisional | 82.39 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 82.35 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 82.31 | |
| PLN02840 | 421 | tRNA dimethylallyltransferase | 82.28 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 82.24 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 82.16 | |
| PRK11773 | 721 | uvrD DNA-dependent helicase II; Provisional | 82.11 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 82.02 | |
| COG0630 | 312 | VirB11 Type IV secretory pathway, VirB11 component | 82.01 | |
| TIGR03877 | 237 | thermo_KaiC_1 KaiC domain protein, Ph0284 family. | 81.94 | |
| PF05729 | 166 | NACHT: NACHT domain | 81.88 | |
| COG3973 | 747 | Superfamily I DNA and RNA helicases [General funct | 81.78 | |
| cd00984 | 242 | DnaB_C DnaB helicase C terminal domain. The hexame | 81.74 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 81.65 | |
| TIGR01074 | 664 | rep ATP-dependent DNA helicase Rep. Designed to id | 81.63 | |
| TIGR03878 | 259 | thermo_KaiC_2 KaiC domain protein, AF_0795 family. | 81.58 | |
| TIGR02397 | 355 | dnaX_nterm DNA polymerase III, subunit gamma and t | 81.48 | |
| cd00544 | 169 | CobU Adenosylcobinamide kinase / adenosylcobinamid | 81.43 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 81.23 | |
| KOG1970|consensus | 634 | 81.21 | ||
| PF00625 | 183 | Guanylate_kin: Guanylate kinase; InterPro: IPR0081 | 81.06 | |
| PRK14530 | 215 | adenylate kinase; Provisional | 80.91 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 80.8 | |
| TIGR01075 | 715 | uvrD DNA helicase II. Designed to identify uvrD me | 80.36 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 80.36 | |
| PRK04301 | 317 | radA DNA repair and recombination protein RadA; Va | 80.31 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 80.23 | |
| PLN02796 | 347 | D-glycerate 3-kinase | 80.18 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 80.18 | |
| cd00071 | 137 | GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. | 80.08 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 80.07 | |
| PRK06305 | 451 | DNA polymerase III subunits gamma and tau; Validat | 80.05 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 80.02 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 80.01 |
| >KOG0922|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-115 Score=1031.20 Aligned_cols=565 Identities=42% Similarity=0.679 Sum_probs=529.4
Q ss_pred hhhhhhhchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCCC---cEEEecchHHHHHHH
Q psy3476 20 KQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISL 96 (1417)
Q Consensus 20 ~~~~~~~~~~~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~~---~i~~tqPrr~aa~~~ 96 (1417)
.+.........++++|+.|||++++++|++++.+++++||.|+||||||||+|||++|.|+. +|.||||||+||+++
T Consensus 32 ~~~~~~~~~~~i~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavsl 111 (674)
T KOG0922|consen 32 AQSYGKSTNLSIQEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSL 111 (674)
T ss_pred ccccccccccCHHHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHH
Confidence 34444556788999999999999999999999999999999999999999999999999985 499999999999999
Q ss_pred HHHHHHHHccccCCeEEEEEeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhh
Q psy3476 97 SKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKK 176 (1417)
Q Consensus 97 a~rva~e~~~~~g~~vGy~ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (1417)
|+|||.|+++.+|+.|||.|||++.+++.|+|+|+|+|+|||++..|
T Consensus 112 A~RVAeE~~~~lG~~VGY~IRFed~ts~~TrikymTDG~LLRE~l~D--------------------------------- 158 (674)
T KOG0922|consen 112 AKRVAEEMGCQLGEEVGYTIRFEDSTSKDTRIKYMTDGMLLREILKD--------------------------------- 158 (674)
T ss_pred HHHHHHHhCCCcCceeeeEEEecccCCCceeEEEecchHHHHHHhcC---------------------------------
Confidence 99999999999999999999999999999999999999999988665
Q ss_pred hhhhhHHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhcccccccee
Q psy3476 177 AEEAPKRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLL 256 (1417)
Q Consensus 177 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~ 256 (1417)
T Consensus 159 -------------------------------------------------------------------------------- 158 (674)
T KOG0922|consen 159 -------------------------------------------------------------------------------- 158 (674)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccCCCCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcc
Q psy3476 257 GVISPPLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGD 336 (1417)
Q Consensus 257 ~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d 336 (1417)
+.|++|++|||||||||++++|
T Consensus 159 ----------------------------------------------------------p~LskYsvIIlDEAHERsl~TD 180 (674)
T KOG0922|consen 159 ----------------------------------------------------------PLLSKYSVIILDEAHERSLHTD 180 (674)
T ss_pred ----------------------------------------------------------CccccccEEEEechhhhhhHHH
Confidence 6789999999999999999999
Q ss_pred hHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHH
Q psy3476 337 FLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSII 416 (1417)
Q Consensus 337 ~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l 416 (1417)
++++++|.+.+.|+++|+|+||||+|++.|++|| ++++++.++||.|||++.|.+.+..++.. ..+..+
T Consensus 181 iLlGlLKki~~~R~~LklIimSATlda~kfS~yF-~~a~i~~i~GR~fPVei~y~~~p~~dYv~----------a~~~tv 249 (674)
T KOG0922|consen 181 ILLGLLKKILKKRPDLKLIIMSATLDAEKFSEYF-NNAPILTIPGRTFPVEILYLKEPTADYVD----------AALITV 249 (674)
T ss_pred HHHHHHHHHHhcCCCceEEEEeeeecHHHHHHHh-cCCceEeecCCCCceeEEeccCCchhhHH----------HHHHHH
Confidence 9999999999999999999999999999999999 68999999999999999999977766633 334444
Q ss_pred HhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCC---cEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhcc
Q psy3476 417 DKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQG---WIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETS 493 (1417)
Q Consensus 417 ~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~---~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~G 493 (1417)
.+++...+.|+||||++|++||+.+++.|.+..+.... ..+.|+||.||.++|.+||+..+.|.||||+||||||+|
T Consensus 250 ~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETS 329 (674)
T KOG0922|consen 250 IQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETS 329 (674)
T ss_pred HHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeee
Confidence 45555577899999999999999999999886543222 268999999999999999999999999999999999999
Q ss_pred CCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHHHhhccCCCcccccChH
Q psy3476 494 ITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSID 573 (1417)
Q Consensus 494 IdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~~l~~~~~pEI~r~~L~ 573 (1417)
||||+|.||||+|++|.+.|++..+++.+...|||++++.||+|||||++||+|||||++++|+.|++.+.|||.|++|.
T Consensus 330 lTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~~~~~~~PEI~R~~Ls 409 (674)
T KOG0922|consen 330 LTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYDKMPLQTVPEIQRVNLS 409 (674)
T ss_pred EEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHhhcccCCCCceeeechH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCcCCCCCCCCCcchhHHHHHHHHhcCCCCCCCCcCh-hhhhccCCCCChhhHHHHHhhhccCChhhH
Q psy3476 574 SLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTS-LGRFLSDLPVDIPLGKMLVFGSMFHQIDTV 652 (1417)
Q Consensus 574 ~~lL~lk~lgi~~~~~f~~l~pP~~~~l~~Al~~L~~lGaId~~~~lT~-LG~~ls~lpldp~lak~Ll~~~~f~cle~v 652 (1417)
.++|+||++|++|+..|+|++||+.+++..|++.|+.+||||.++.+|. +|+.|+.+|++|.++|||+.+..++|.+++
T Consensus 410 ~~vL~Lkalgi~d~l~F~f~d~P~~~~l~~AL~~L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~ 489 (674)
T KOG0922|consen 410 SAVLQLKALGINDPLRFPFIDPPPPEALEEALEELYSLGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEI 489 (674)
T ss_pred HHHHHHHhcCCCCcccCCCCCCCChHHHHHHHHHHHhcCcccCcCCcCchHHhhhhhcCCCcchhhhhhhccccCCcchh
Confidence 9999999999999999999999999999999999999999999999998 999999999999999999999999999999
Q ss_pred HHHhhhccCCCccccCCCCChh-HHHHHhhcccCCCChHHHHHHHHHHHHhhhhhchHHHHHHHcCCCHHHHHHHHHHHH
Q psy3476 653 LSLAAVLSVQSPFTNRAFRDPD-CETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRS 731 (1417)
Q Consensus 653 l~IaA~Lsv~~~F~~~~~~~~~-~~~~r~~f~~~~sD~ltlln~f~~w~~~~~~~~~~~~WC~~~~L~~~~L~ei~~lr~ 731 (1417)
++|+|+||+++.|.+|..++.+ +...|.+|.+.+|||+|++|+|+.|.+. +..++||.+|+|+++.|+.+.++|.
T Consensus 490 l~i~a~Lsv~~~f~~p~~~~~~~a~~~~~kf~~~eGDh~tlL~vy~~~~~~----~~~~~wC~en~i~~r~l~~a~~ir~ 565 (674)
T KOG0922|consen 490 LTIAAMLSVQSVFSRPKDKKAEDADRKRAKFANPEGDHLTLLNVYESWKEN----GTSKKWCKENFINARSLKRAKDIRK 565 (674)
T ss_pred hhheeeeeccceecCccchhhhhhhHHHHhhcCcccCHHHHHHHHHHHHhc----CChhhHHHHhcccHHHHHHHHHHHH
Confidence 9999999999999999887777 8889999999999999999999999863 4678999999999999999999999
Q ss_pred HHHHHHHHCCCCcCCCCCCCChhHHHHHHhcCchHHHHHHH
Q psy3476 732 QFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIK 772 (1417)
Q Consensus 732 QL~~iL~~~gl~~~~~~~~~~~~s~~ral~~G~~~~L~~l~ 772 (1417)
||.+++.+.++...+++.+ .+.+.+|+.+|+|+|++.+.
T Consensus 566 QL~~i~~~~~~~~~s~~~d--~~~i~k~l~aGff~N~A~~~ 604 (674)
T KOG0922|consen 566 QLRRILDKFGLPVSSCGGD--MEKIRKCLCAGFFRNVAERD 604 (674)
T ss_pred HHHHHHHHcCCCccCCCCC--HHHHHHHHHHHHHHHHHHhh
Confidence 9999999999988766555 68999999999999999986
|
|
| >KOG0923|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-111 Score=984.73 Aligned_cols=566 Identities=37% Similarity=0.611 Sum_probs=528.1
Q ss_pred hhchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCCC----cEEEecchHHHHHHHHHHH
Q psy3476 25 FSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ----RIACTQPRRIACISLSKRV 100 (1417)
Q Consensus 25 ~~~~~~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~~----~i~~tqPrr~aa~~~a~rv 100 (1417)
..+...|++.|++||||.++++++.++++++|+||.|+||||||||+|||+.|+|+. +|.||||||+||+++|.||
T Consensus 251 ~~~~~~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRV 330 (902)
T KOG0923|consen 251 YERRESIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARV 330 (902)
T ss_pred HHHHHHHHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHH
Confidence 335678999999999999999999999999999999999999999999999999983 4999999999999999999
Q ss_pred HHHHccccCCeEEEEEeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhh
Q psy3476 101 AYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEA 180 (1417)
Q Consensus 101 a~e~~~~~g~~vGy~ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1417)
|+|++.++|+.|||.||||++++++|.|.|||+|||+|+++.+
T Consensus 331 A~EMgvkLG~eVGYsIRFEdcTSekTvlKYMTDGmLlREfL~e------------------------------------- 373 (902)
T KOG0923|consen 331 AEEMGVKLGHEVGYSIRFEDCTSEKTVLKYMTDGMLLREFLSE------------------------------------- 373 (902)
T ss_pred HHHhCcccccccceEEEeccccCcceeeeeecchhHHHHHhcc-------------------------------------
Confidence 9999999999999999999999999999999999999998765
Q ss_pred hHHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccC
Q psy3476 181 PKRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVIS 260 (1417)
Q Consensus 181 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s 260 (1417)
T Consensus 374 -------------------------------------------------------------------------------- 373 (902)
T KOG0923|consen 374 -------------------------------------------------------------------------------- 373 (902)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHH
Q psy3476 261 PPLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLG 340 (1417)
Q Consensus 261 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~ 340 (1417)
+.|..|++|||||||||.+++|++.+
T Consensus 374 ------------------------------------------------------pdLasYSViiiDEAHERTL~TDILfg 399 (902)
T KOG0923|consen 374 ------------------------------------------------------PDLASYSVIIVDEAHERTLHTDILFG 399 (902)
T ss_pred ------------------------------------------------------ccccceeEEEeehhhhhhhhhhHHHH
Confidence 66889999999999999999999999
Q ss_pred HHHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhC
Q psy3476 341 VIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKY 420 (1417)
Q Consensus 341 llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~ 420 (1417)
+++.+.+.|+++|++++|||+|++.|+.|| +++|++.+|||.|||+++|.+.+..++. ...+..|.+++
T Consensus 400 LvKDIar~RpdLKllIsSAT~DAekFS~fF-DdapIF~iPGRRyPVdi~Yt~~PEAdYl----------dAai~tVlqIH 468 (902)
T KOG0923|consen 400 LVKDIARFRPDLKLLISSATMDAEKFSAFF-DDAPIFRIPGRRYPVDIFYTKAPEADYL----------DAAIVTVLQIH 468 (902)
T ss_pred HHHHHHhhCCcceEEeeccccCHHHHHHhc-cCCcEEeccCcccceeeecccCCchhHH----------HHHHhhheeeE
Confidence 999999999999999999999999999999 7999999999999999999988877663 33445555666
Q ss_pred CCCCCCcEEEEeCCHHHHHHHHHHHHhhh----hccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCc
Q psy3476 421 PRTERGDVLIFMSGISEISSIVRAAQEYN----EKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITI 496 (1417)
Q Consensus 421 ~~~~~g~iLVFl~~~~eie~la~~L~~~~----~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdI 496 (1417)
...+.|+||||++++++|+.+.+.|.+.. .+...+.++|+|+.||.+.|.+||++.|+|.||||+||||||+|+||
T Consensus 469 ~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTI 548 (902)
T KOG0923|consen 469 LTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTI 548 (902)
T ss_pred eccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceee
Confidence 66778999999999999999988886543 34567899999999999999999999999999999999999999999
Q ss_pred CCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHH-HhhccCCCcccccChHHH
Q psy3476 497 DGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS-LLAEYSTPEIRRVSIDSL 575 (1417)
Q Consensus 497 P~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~-~l~~~~~pEI~r~~L~~~ 575 (1417)
|+|.||||+|++|+.+|++.+|+.+|...|||+|++.||+|||||+|||+|||||+...|. .+...+.|||+|.+|.++
T Consensus 549 dgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nv 628 (902)
T KOG0923|consen 549 DGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNV 628 (902)
T ss_pred cCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCCceEEeechhhhhhhhccCCCcceeeccchhH
Confidence 9999999999999999999999999999999999999999999999999999999999887 577788899999999999
Q ss_pred HHHHHhhCCCCCcCCCCCCCCCcchhHHHHHHHHhcCCCCCCCCcChhhhhccCCCCChhhHHHHHhhhccCChhhHHHH
Q psy3476 576 LLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSL 655 (1417)
Q Consensus 576 lL~lk~lgi~~~~~f~~l~pP~~~~l~~Al~~L~~lGaId~~~~lT~LG~~ls~lpldp~lak~Ll~~~~f~cle~vl~I 655 (1417)
+|.||++||.|+..|+|++||+.+.+..|++.|+.+||++..|+||.+|+.|++||+||+++|||+.+..+.|.+++++|
T Consensus 629 VL~LkSLGI~Dl~~FdFmDpPp~etL~~aLE~LyaLGALn~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs~Eiiti 708 (902)
T KOG0923|consen 629 VLLLKSLGIHDLIHFDFLDPPPTETLLKALEQLYALGALNHLGELTKLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITI 708 (902)
T ss_pred HHHHHhcCcchhcccccCCCCChHHHHHHHHHHHHhhccccccchhhhhhhhhhcCCCHHHHhHHhhhccccchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCC-CccccCCCCChhHHHHHhhcccCCCChHHHHHHHHHHHHhhhhhchHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy3476 656 AAVLSVQ-SPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQFK 734 (1417)
Q Consensus 656 aA~Lsv~-~~F~~~~~~~~~~~~~r~~f~~~~sD~ltlln~f~~w~~~~~~~~~~~~WC~~~~L~~~~L~ei~~lr~QL~ 734 (1417)
+||||+. ++|++|......++.+++.|....|||++++++|+.|.+. ..+.+||.+|++.+++|.++.++|.||.
T Consensus 709 aamlS~~~svfyrpk~~~v~ad~a~~~f~~~~gDhi~~L~vyn~w~es----~~s~~wC~e~~iq~~sm~rardir~qL~ 784 (902)
T KOG0923|consen 709 AAMLSVGASVFYRPKDKQVHADNARKNFEEPVGDHIVLLNVYNQWKES----KYSTQWCYENFIQYRSMKRARDIRDQLE 784 (902)
T ss_pred HHHHhcCchheecchhhhhhhhhhhhccCCCCcchhhhhHHHHHHhhc----chhhHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 9999985 7899998888888889999999999999999999999765 3578999999999999999999999999
Q ss_pred HHHHHCCCCcCCCCCCCChhHHHHHHhcCchHHHHHHHhhhccc
Q psy3476 735 QVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEE 778 (1417)
Q Consensus 735 ~iL~~~gl~~~~~~~~~~~~s~~ral~~G~~~~L~~l~~~~~~~ 778 (1417)
.++...++-..++.. +..++.+++.+|+|++++.+.+.+.+.
T Consensus 785 gll~~v~~~~~s~~~--~~~~irk~i~aGff~h~a~l~~~g~y~ 826 (902)
T KOG0923|consen 785 GLLERVEIDLSSNQN--DLDKIRKAITAGFFYHTAKLSKGGHYR 826 (902)
T ss_pred HHhhhccccccCChH--HHHHHHHHHhccccccceeccCCCcce
Confidence 999999887666433 578999999999999999998765443
|
|
| >KOG0924|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-110 Score=967.70 Aligned_cols=564 Identities=35% Similarity=0.602 Sum_probs=526.9
Q ss_pred hhchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCCC---cEEEecchHHHHHHHHHHHH
Q psy3476 25 FSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVA 101 (1417)
Q Consensus 25 ~~~~~~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~~---~i~~tqPrr~aa~~~a~rva 101 (1417)
|-.-+.++++|+.||++..++++++.|+.|+++||+|+||||||||++||++++|+. -|.||||||+||+++|+||+
T Consensus 342 fa~~k~i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa 421 (1042)
T KOG0924|consen 342 FASKKSIREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVA 421 (1042)
T ss_pred ccccchHHHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHH
Confidence 444456899999999999999999999999999999999999999999999999985 49999999999999999999
Q ss_pred HHHccccCCeEEEEEeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhh
Q psy3476 102 YETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAP 181 (1417)
Q Consensus 102 ~e~~~~~g~~vGy~ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (1417)
.|++..+|..|||.||||+.+++.|+|.|+|+|+|||+...|
T Consensus 422 ~EM~~~lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d-------------------------------------- 463 (1042)
T KOG0924|consen 422 EEMGVTLGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKD-------------------------------------- 463 (1042)
T ss_pred HHhCCccccccceEEEeeecCCCceeEEEeccchHHHHHhhh--------------------------------------
Confidence 999999999999999999999999999999999999987554
Q ss_pred HHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCC
Q psy3476 182 KRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISP 261 (1417)
Q Consensus 182 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~ 261 (1417)
T Consensus 464 -------------------------------------------------------------------------------- 463 (1042)
T KOG0924|consen 464 -------------------------------------------------------------------------------- 463 (1042)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHH
Q psy3476 262 PLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGV 341 (1417)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~l 341 (1417)
..|.+|++||+||||||++++|++.++
T Consensus 464 -----------------------------------------------------~~L~kYSviImDEAHERslNtDilfGl 490 (1042)
T KOG0924|consen 464 -----------------------------------------------------RDLDKYSVIIMDEAHERSLNTDILFGL 490 (1042)
T ss_pred -----------------------------------------------------hhhhheeEEEechhhhcccchHHHHHH
Confidence 457789999999999999999999999
Q ss_pred HHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCC
Q psy3476 342 IKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYP 421 (1417)
Q Consensus 342 lk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~ 421 (1417)
++.+...|.++|+|++|||+|++.|++|| ++||.+.++||+|||++.|...+..+|.. ..+....+++.
T Consensus 491 lk~~larRrdlKliVtSATm~a~kf~nfF-gn~p~f~IpGRTyPV~~~~~k~p~eDYVe----------aavkq~v~Ihl 559 (1042)
T KOG0924|consen 491 LKKVLARRRDLKLIVTSATMDAQKFSNFF-GNCPQFTIPGRTYPVEIMYTKTPVEDYVE----------AAVKQAVQIHL 559 (1042)
T ss_pred HHHHHHhhccceEEEeeccccHHHHHHHh-CCCceeeecCCccceEEEeccCchHHHHH----------HHHhhheEeec
Confidence 99999999999999999999999999999 58999999999999999999888877633 33343444455
Q ss_pred CCCCCcEEEEeCCHHHHHHHHHHHHhhhh-----ccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCc
Q psy3476 422 RTERGDVLIFMSGISEISSIVRAAQEYNE-----KSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITI 496 (1417)
Q Consensus 422 ~~~~g~iLVFl~~~~eie~la~~L~~~~~-----~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdI 496 (1417)
....|++|||.+|+++|+..+..+..... ...++.|+|+||.||.+-|.++|+..+.|.+||||||||||+|+||
T Consensus 560 ~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi 639 (1042)
T KOG0924|consen 560 SGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTI 639 (1042)
T ss_pred cCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceee
Confidence 56779999999999999999888765332 2347899999999999999999999999999999999999999999
Q ss_pred CCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHH-HhhccCCCcccccChHHH
Q psy3476 497 DGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS-LLAEYSTPEIRRVSIDSL 575 (1417)
Q Consensus 497 P~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~-~l~~~~~pEI~r~~L~~~ 575 (1417)
|+|.||||||+.|.++|++..|+..+..+|||+|++.||+|||||+|||.|||+||+..|. .|.+.+.|||+|++|.++
T Consensus 640 ~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nv 719 (1042)
T KOG0924|consen 640 PGIRYVIDTGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNV 719 (1042)
T ss_pred cceEEEEecCceeeeecccccccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhH
Confidence 9999999999999999999999999999999999999999999999999999999998776 799999999999999999
Q ss_pred HHHHHhhCCCCCcCCCCCCCCCcchhHHHHHHHHhcCCCCCCCCcChhhhhccCCCCChhhHHHHHhhhccCChhhHHHH
Q psy3476 576 LLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSL 655 (1417)
Q Consensus 576 lL~lk~lgi~~~~~f~~l~pP~~~~l~~Al~~L~~lGaId~~~~lT~LG~~ls~lpldp~lak~Ll~~~~f~cle~vl~I 655 (1417)
+|.|+++|+.++..|+|++||+.+.+.+++..|..+|||+..|.||++|+.|+.||+||.++|||+.++.++|.+++++|
T Consensus 720 VLlLkslgV~dll~FdFmD~Pped~~~~sly~Lw~LGAl~~~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsI 799 (1042)
T KOG0924|consen 720 VLLLKSLGVDDLLKFDFMDPPPEDNLLNSLYQLWTLGALDNTGQLTPLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSI 799 (1042)
T ss_pred HHHHHhcChhhhhCCCcCCCCHHHHHHHHHHHHHHhhccccCCccchhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCCCccccCCCCChhHHHHHhhcccCCCChHHHHHHHHHHHHhhhhhchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Q psy3476 656 AAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQFKQ 735 (1417)
Q Consensus 656 aA~Lsv~~~F~~~~~~~~~~~~~r~~f~~~~sD~ltlln~f~~w~~~~~~~~~~~~WC~~~~L~~~~L~ei~~lr~QL~~ 735 (1417)
++|||+...|++|..+++++..+|.+|...+|||||+||+|++|.+. ..+..||.+|+|+.++|..+.++|+||++
T Consensus 800 vSmLSvp~VF~rpker~eead~ar~Kf~~~~sDhLTlLNVf~qw~~~----~~~~~WCnd~~l~~kaL~~arevR~ql~~ 875 (1042)
T KOG0924|consen 800 VSMLSVPAVFYRPKEREEEADAAREKFQVPESDHLTLLNVFNQWRKN----KYSSMWCNDHYLQVKALKKAREVRRQLLE 875 (1042)
T ss_pred HHHhcccceeeccccchhhhhhHHhhhcCCCCchhhHHHHHHHHHhc----CCchhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999865 35678999999999999999999999999
Q ss_pred HHHHCCCCcCCCCCCCChhHHHHHHhcCchHHHHHHHhhhcc
Q psy3476 736 VLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAE 777 (1417)
Q Consensus 736 iL~~~gl~~~~~~~~~~~~s~~ral~~G~~~~L~~l~~~~~~ 777 (1417)
+|++.++...++ .+.+-+++|+++|+|-|.+.++..+.|
T Consensus 876 il~~l~~~l~S~---~dwdivrKCIcs~~fhn~Arlkg~g~Y 914 (1042)
T KOG0924|consen 876 ILKQLKLPLISS---DDWDIVRKCICSAYFHNAARLKGIGEY 914 (1042)
T ss_pred HHHHcCCCcccC---chHHHHHHHHHHHHHHHHHHhccCceE
Confidence 999999987765 458999999999999999999876655
|
|
| >KOG0920|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-106 Score=1001.79 Aligned_cols=554 Identities=38% Similarity=0.650 Sum_probs=501.6
Q ss_pred hhhhhhhchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC-----CCcEEEecchHHHHH
Q psy3476 20 KQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG-----FQRIACTQPRRIACI 94 (1417)
Q Consensus 20 ~~~~~~~~~~~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~-----~~~i~~tqPrr~aa~ 94 (1417)
.++.+.+...++++.|++||++.++++|+++|.+++|++|+|+||||||||+||||++.. .++|+||||||++|+
T Consensus 154 ~~~~~s~~~~~~~~~R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAI 233 (924)
T KOG0920|consen 154 SEPKKSESYKEMLRFRESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAI 233 (924)
T ss_pred chhhhhhHHHHHHHHHHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHH
Confidence 344556678899999999999999999999999999999999999999999999999864 689999999999999
Q ss_pred HHHHHHHHHHccccCCeEEEEEeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHh
Q psy3476 95 SLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKR 174 (1417)
Q Consensus 95 ~~a~rva~e~~~~~g~~vGy~ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (1417)
++|+|||+|+++..|..|||+||++++.+..|+++|||+|+|||.++.|
T Consensus 234 svAeRVa~ER~~~~g~~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~~------------------------------- 282 (924)
T KOG0920|consen 234 SVAERVAKERGESLGEEVGYQVRLESKRSRETRLLFCTTGVLLRRLQSD------------------------------- 282 (924)
T ss_pred HHHHHHHHHhccccCCeeeEEEeeecccCCceeEEEecHHHHHHHhccC-------------------------------
Confidence 9999999999999999999999999999999999999999999998765
Q ss_pred hhhhhhhHHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccc
Q psy3476 175 KKAEEAPKRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDF 254 (1417)
Q Consensus 175 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~ 254 (1417)
T Consensus 283 -------------------------------------------------------------------------------- 282 (924)
T KOG0920|consen 283 -------------------------------------------------------------------------------- 282 (924)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccCCCCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccC
Q psy3476 255 LLGVISPPLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLH 334 (1417)
Q Consensus 255 l~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~ 334 (1417)
+.+.++++||+||+|||+++
T Consensus 283 ------------------------------------------------------------~~l~~vthiivDEVHER~i~ 302 (924)
T KOG0920|consen 283 ------------------------------------------------------------PTLSGVTHIIVDEVHERSIN 302 (924)
T ss_pred ------------------------------------------------------------cccccCceeeeeeEEEccCC
Confidence 56778999999999999999
Q ss_pred cchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEecccccccc--------cc---ccC
Q psy3476 335 GDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDR--------TK---SEK 403 (1417)
Q Consensus 335 ~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~--------~~---~~~ 403 (1417)
+||++.+++.++..++++|+|+||||+|++.|++|| +++++++++|++||+..+|........ .. ...
T Consensus 303 ~DflLi~lk~lL~~~p~LkvILMSAT~dae~fs~YF-~~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~ 381 (924)
T KOG0920|consen 303 TDFLLILLKDLLPRNPDLKVILMSATLDAELFSDYF-GGCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERS 381 (924)
T ss_pred cccHHHHHHHHhhhCCCceEEEeeeecchHHHHHHh-CCCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccC
Confidence 999999999999999999999999999999999999 599999999999999988754332110 00 000
Q ss_pred ----------CCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhc--cCCcEEEEecCCCCHHHHHH
Q psy3476 404 ----------LDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEK--SQGWIVLPLHSTLSLEEQDR 471 (1417)
Q Consensus 404 ----------~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~--~~~~~V~~LHs~Ls~~eR~~ 471 (1417)
.....+..+.+.+.........|.||||+||.++|..+.+.|...... ..++.+.++||.|+.++|+.
T Consensus 382 ~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~ 461 (924)
T KOG0920|consen 382 QLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQA 461 (924)
T ss_pred ccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHH
Confidence 001123344445555555566899999999999999999999753322 24588999999999999999
Q ss_pred HhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEec
Q psy3476 472 VFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLY 551 (1417)
Q Consensus 472 v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~ 551 (1417)
||...+.|.+|||+||||||+|||||||.||||||++|++.||+..+++.+...|+|++++.||+|||||..+|+||+||
T Consensus 462 VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~ 541 (924)
T KOG0920|consen 462 VFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLY 541 (924)
T ss_pred hcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHhhc-cCCCcccccChHHHHHHHHhhCCCCCcCC--CCCCCCCcchhHHHHHHHHhcCCCCCCCCcChhhhhcc
Q psy3476 552 SEEQYSLLAE-YSTPEIRRVSIDSLLLSLVCMGLGDVRKF--PFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLS 628 (1417)
Q Consensus 552 t~~~~~~l~~-~~~pEI~r~~L~~~lL~lk~lgi~~~~~f--~~l~pP~~~~l~~Al~~L~~lGaId~~~~lT~LG~~ls 628 (1417)
++..|+.+.. ++.|||.|.+|.+++|++|.++.+++..| ..++||+.+++..|+..|.++||++.+++||+||+.++
T Consensus 542 ~~~~~~~~~~~~q~PEilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~e~LT~LG~~la 621 (924)
T KOG0920|consen 542 TRSRYEKLMLAYQLPEILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERLKQIGALDESEELTPLGLHLA 621 (924)
T ss_pred chhhhhhcccccCChHHHhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCcccchHHHHHHH
Confidence 9999998776 99999999999999999999998888877 47999999999999999999999999999999999999
Q ss_pred CCCCChhhHHHHHhhhccCChhhHHHHhhhccCCCccccCCCCChhHHHHHhhcccC-CCChHHHHHHHHHHHHhhhhh-
Q psy3476 629 DLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESN-HGDPLTVLNAYKEWLGVKKDR- 706 (1417)
Q Consensus 629 ~lpldp~lak~Ll~~~~f~cle~vl~IaA~Lsv~~~F~~~~~~~~~~~~~r~~f~~~-~sD~ltlln~f~~w~~~~~~~- 706 (1417)
.||+||++|||+++|+.|+|++++++|||+|+..+||..+..++...+++++.|..+ .|||++++++|+.|.++...+
T Consensus 622 ~lPvd~~igK~ll~g~if~cLdp~l~iaa~Ls~k~PF~~~~~~~~~~~~~~~~~~~~~~SD~la~~~ay~~w~~~~~~~~ 701 (924)
T KOG0920|consen 622 SLPVDVRIGKLLLFGAIFGCLDPALTIAAALSFKSPFVSPLGKREEADKAKKLLALDSISDHLAVVRAYAGWREILRSGP 701 (924)
T ss_pred hCCCccccchhheehhhccccchhhhHHHHhccCCCcccCCCchhHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999999999999888888754 599999999999999886542
Q ss_pred chHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCCCCcC
Q psy3476 707 VRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITD 745 (1417)
Q Consensus 707 ~~~~~WC~~~~L~~~~L~ei~~lr~QL~~iL~~~gl~~~ 745 (1417)
...++||++|+|+..+|+++..+|+||.+.|.+.|++..
T Consensus 702 ~~~~~fc~~~fLs~~~l~~i~~l~~q~~~~l~~~g~~~~ 740 (924)
T KOG0920|consen 702 SAEKDFCEENFLSSNTLQEISSLRVQFLELLSDIGLIPI 740 (924)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhcccccC
Confidence 367899999999999999999999999999999999754
|
|
| >KOG0925|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-102 Score=883.31 Aligned_cols=584 Identities=33% Similarity=0.538 Sum_probs=536.3
Q ss_pred HhhhhhhhhhhchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC---CcEEEecchHHH
Q psy3476 16 YLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIA 92 (1417)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~---~~i~~tqPrr~a 92 (1417)
...|..++.-+++.+|.+.|..||+|.++.+.++.+.+|+.++++|+||||||||||||.++... ..|+||||||+|
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrva 103 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVA 103 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHH
Confidence 44567778888899999999999999999999999999999999999999999999999998654 469999999999
Q ss_pred HHHHHHHHHHHHccccCCeEEEEEeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHH
Q psy3476 93 CISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAI 172 (1417)
Q Consensus 93 a~~~a~rva~e~~~~~g~~vGy~ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (1417)
|+++|+|||.||.-.+|..|||.||+|++.+++|-+.|||+|||+|+.++|
T Consensus 104 amsva~RVadEMDv~lG~EVGysIrfEdC~~~~T~Lky~tDgmLlrEams~----------------------------- 154 (699)
T KOG0925|consen 104 AMSVAQRVADEMDVTLGEEVGYSIRFEDCTSPNTLLKYCTDGMLLREAMSD----------------------------- 154 (699)
T ss_pred HHHHHHHHHHHhccccchhccccccccccCChhHHHHHhcchHHHHHHhhC-----------------------------
Confidence 999999999999999999999999999999999999999999999987665
Q ss_pred HhhhhhhhhHHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccc
Q psy3476 173 KRKKAEEAPKRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYG 252 (1417)
Q Consensus 173 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~ 252 (1417)
T Consensus 155 -------------------------------------------------------------------------------- 154 (699)
T KOG0925|consen 155 -------------------------------------------------------------------------------- 154 (699)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cceeeccCCCCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccc
Q psy3476 253 DFLLGVISPPLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERH 332 (1417)
Q Consensus 253 d~l~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~ 332 (1417)
+.+..|++||+||||||+
T Consensus 155 --------------------------------------------------------------p~l~~y~viiLDeahERt 172 (699)
T KOG0925|consen 155 --------------------------------------------------------------PLLGRYGVIILDEAHERT 172 (699)
T ss_pred --------------------------------------------------------------cccccccEEEechhhhhh
Confidence 668889999999999999
Q ss_pred cCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHH
Q psy3476 333 LHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRI 412 (1417)
Q Consensus 333 l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~i 412 (1417)
+.+|.++++++.+...|+++|+|+||||+++.+|..|| +++|++.++| .+|++++|.+.+..++ ++..
T Consensus 173 lATDiLmGllk~v~~~rpdLk~vvmSatl~a~Kfq~yf-~n~Pll~vpg-~~PvEi~Yt~e~erDy----------lEaa 240 (699)
T KOG0925|consen 173 LATDILMGLLKEVVRNRPDLKLVVMSATLDAEKFQRYF-GNAPLLAVPG-THPVEIFYTPEPERDY----------LEAA 240 (699)
T ss_pred HHHHHHHHHHHHHHhhCCCceEEEeecccchHHHHHHh-CCCCeeecCC-CCceEEEecCCCChhH----------HHHH
Confidence 99999999999999999999999999999999999999 7999999999 9999999999887766 4455
Q ss_pred HHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHh----hhhccCCcEEEEecCCCCHHHHHHHhccCCCC-----CceE
Q psy3476 413 LSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQE----YNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEG-----LRKC 483 (1417)
Q Consensus 413 l~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~----~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G-----~rkV 483 (1417)
+..+.+++...++|+||||+++.++|+.+++.+.. +........|+||| +.+|+.+|++.+.. .|||
T Consensus 241 irtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~Rkv 316 (699)
T KOG0925|consen 241 IRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKV 316 (699)
T ss_pred HHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceE
Confidence 66666666667799999999999999999999874 23344678999999 77888999988743 4899
Q ss_pred EEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHH-Hhhcc
Q psy3476 484 IVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS-LLAEY 562 (1417)
Q Consensus 484 LVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~-~l~~~ 562 (1417)
+|+||+||++++|++|.+|||.|+.|+++|++.-..+++...||||+++.||+|||||+.||+||+||+++.++ .|.+.
T Consensus 317 Vvstniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~~ 396 (699)
T KOG0925|consen 317 VVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQ 396 (699)
T ss_pred EEEecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997 69999
Q ss_pred CCCcccccChHHHHHHHHhhCCCCCcCCCCCCCCCcchhHHHHHHHHhcCCCCCCCCcChhhhhccCCCCChhhHHHHHh
Q psy3476 563 STPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVF 642 (1417)
Q Consensus 563 ~~pEI~r~~L~~~lL~lk~lgi~~~~~f~~l~pP~~~~l~~Al~~L~~lGaId~~~~lT~LG~~ls~lpldp~lak~Ll~ 642 (1417)
+.|||++.+|.+++|+||.+|+.++..|+|++||.++.+.+|++.|..++|+|++|+||++|..||+||+||.+||||+.
T Consensus 397 typeilrsNL~s~VL~LKklgI~dlvhfdfmDpPAPEtLMrALE~LnYLaaLdDdGnLT~lG~imSEFPLdPqLAkmLi~ 476 (699)
T KOG0925|consen 397 TYPEILRSNLSSTVLQLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLAALDDDGNLTSLGEIMSEFPLDPQLAKMLIG 476 (699)
T ss_pred CcHHHHHHhhHHHHHHHHhcCcccccCCcCCCCCChHHHHHHHHHhhhhhhhCCCcccchhhhhhhcCCCChHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCChhhHHHHhhhccCCCccccCC-CCChhHHHHHhhcccCCCChHHHHHHHHHHHHhhhhhchHHHHHHHcCCCHH
Q psy3476 643 GSMFHQIDTVLSLAAVLSVQSPFTNRA-FRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQ 721 (1417)
Q Consensus 643 ~~~f~cle~vl~IaA~Lsv~~~F~~~~-~~~~~~~~~r~~f~~~~sD~ltlln~f~~w~~~~~~~~~~~~WC~~~~L~~~ 721 (1417)
++.|.|.+++++|+||||+.+.|.+|. ..++.+.++++.|++.+|||+|++|+|++|++. ....+||+.||||++
T Consensus 477 S~efnCsnEiLsisAMLsvPncFvRp~~~a~kaAdeak~~faH~dGDHlTLlnVYhAfkq~----~~~~~WC~~~flN~r 552 (699)
T KOG0925|consen 477 SCEFNCSNEILSISAMLSVPNCFVRPTSSASKAADEAKETFAHIDGDHLTLLNVYHAFKQN----NEDPNWCYDNFLNYR 552 (699)
T ss_pred cCCCCchHHHHHHHhcccCCccccCCChhHHHHHHHHHHHhccCCcchHHHHHHHHHHHhc----CCChhHHHHhcccHH
Confidence 999999999999999999999999987 667778899999999999999999999999864 246789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCcCCCC--CCCChhHHHHHHhcCchHHHHHHHhhhccccccccccccccc
Q psy3476 722 RFYEVTKLRSQFKQVLGDSGLITDIPG--PDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADN 790 (1417)
Q Consensus 722 ~L~ei~~lr~QL~~iL~~~gl~~~~~~--~~~~~~s~~ral~~G~~~~L~~l~~~~~~~~~r~rk~l~~~~ 790 (1417)
+|..+.++|.||.+++.++++...++. +..++..+++|+.+|+|++++++.++..|-.-+...+..+..
T Consensus 553 al~~Ad~vR~qL~rim~R~~L~~~st~F~S~~y~~nirKALvsgyFmqVA~~~~~~~Ylt~kdnqvvqLhp 623 (699)
T KOG0925|consen 553 ALKSADNVRQQLLRIMDRFNLPLCSTDFGSRDYYVNIRKALVSGYFMQVAHLERGGHYLTVKDNQVVQLHP 623 (699)
T ss_pred HHHhHHHHHHHHHHHHHHhcCcccCCCCCChhHHHHHHHHHHHHHHHHHHhhccCCceEEEecCceEEecc
Confidence 999999999999999999999766643 344577899999999999999998877765555555555544
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-95 Score=914.58 Aligned_cols=568 Identities=37% Similarity=0.600 Sum_probs=504.1
Q ss_pred hhhchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC---CcEEEecchHHHHHHHHHHH
Q psy3476 24 KFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIACISLSKRV 100 (1417)
Q Consensus 24 ~~~~~~~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~---~~i~~tqPrr~aa~~~a~rv 100 (1417)
.-.+...+.++|..||++..+++|++++.+++++||+||||||||||+||++++.++ ..|.||||||+||+++|+||
T Consensus 35 ~~~~~~~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~Rv 114 (845)
T COG1643 35 RSANVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERV 114 (845)
T ss_pred cccccchhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHH
Confidence 344667889999999999999999999999999999999999999999999999986 58999999999999999999
Q ss_pred HHHHccccCCeEEEEEeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhh
Q psy3476 101 AYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEA 180 (1417)
Q Consensus 101 a~e~~~~~g~~vGy~ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (1417)
|+|+++++|..|||.||||++++++|+|.|||+|+|+|+++.|
T Consensus 115 Aeel~~~~G~~VGY~iRfe~~~s~~Trik~mTdGiLlrei~~D------------------------------------- 157 (845)
T COG1643 115 AEELGEKLGETVGYSIRFESKVSPRTRIKVMTDGILLREIQND------------------------------------- 157 (845)
T ss_pred HHHhCCCcCceeeEEEEeeccCCCCceeEEeccHHHHHHHhhC-------------------------------------
Confidence 9999999999999999999999999999999999999998776
Q ss_pred hHHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccC
Q psy3476 181 PKRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVIS 260 (1417)
Q Consensus 181 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s 260 (1417)
T Consensus 158 -------------------------------------------------------------------------------- 157 (845)
T COG1643 158 -------------------------------------------------------------------------------- 157 (845)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHH
Q psy3476 261 PPLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLG 340 (1417)
Q Consensus 261 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~ 340 (1417)
+.|+.|++||+||+|||++++|++++
T Consensus 158 ------------------------------------------------------~~Ls~ys~vIiDEaHERSl~tDilLg 183 (845)
T COG1643 158 ------------------------------------------------------PLLSGYSVVIIDEAHERSLNTDILLG 183 (845)
T ss_pred ------------------------------------------------------cccccCCEEEEcchhhhhHHHHHHHH
Confidence 56889999999999999999999999
Q ss_pred HHHHHhccCC-CCcEEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhh
Q psy3476 341 VIKCLLHSTA-EVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKK 419 (1417)
Q Consensus 341 llk~l~~~r~-~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~ 419 (1417)
+++.+...++ ++|+|+||||+|.+.|++|| +++|++.++||.|||+++|.+....++. ....+...+...
T Consensus 184 llk~~~~~rr~DLKiIimSATld~~rfs~~f-~~apvi~i~GR~fPVei~Y~~~~~~d~~--------l~~ai~~~v~~~ 254 (845)
T COG1643 184 LLKDLLARRRDDLKLIIMSATLDAERFSAYF-GNAPVIEIEGRTYPVEIRYLPEAEADYI--------LLDAIVAAVDIH 254 (845)
T ss_pred HHHHHHhhcCCCceEEEEecccCHHHHHHHc-CCCCEEEecCCccceEEEecCCCCcchh--------HHHHHHHHHHHh
Confidence 9999766655 89999999999999999999 6799999999999999999876654431 123344444444
Q ss_pred CCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCe
Q psy3476 420 YPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGI 499 (1417)
Q Consensus 420 ~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V 499 (1417)
. ..+.|+||||+||.+||+.+++.|.+ ........|+||||.|+.++|.++|++.+.|+||||+||||||+|||||+|
T Consensus 255 ~-~~~~GdILvFLpG~~EI~~~~~~L~~-~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gI 332 (845)
T COG1643 255 L-REGSGSILVFLPGQREIERTAEWLEK-AELGDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGI 332 (845)
T ss_pred c-cCCCCCEEEECCcHHHHHHHHHHHHh-ccccCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCe
Confidence 4 46689999999999999999999987 111156899999999999999999999999999999999999999999999
Q ss_pred EEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHHHhhccCCCcccccChHHHHHHH
Q psy3476 500 RFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSL 579 (1417)
Q Consensus 500 ~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~~l~~~~~pEI~r~~L~~~lL~l 579 (1417)
+||||||+.|++.||+.+++..+.+.|||||++.||+|||||++||+||+||++++|..|+.++.|||.|++|++++|+|
T Consensus 333 r~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~~~~~~t~PEIlrtdLs~~vL~l 412 (845)
T COG1643 333 RYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFLAFPEFTLPEILRTDLSGLVLQL 412 (845)
T ss_pred EEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHHhcccCCChhhhhcchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCC-CCcCCCCCCCCCcchhHHHHHHHHhcCCCCCCCCcChhhhhccCCCCChhhHHHHHhhhccCChhhHHHHhhh
Q psy3476 580 VCMGLG-DVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAV 658 (1417)
Q Consensus 580 k~lgi~-~~~~f~~l~pP~~~~l~~Al~~L~~lGaId~~~~lT~LG~~ls~lpldp~lak~Ll~~~~f~cle~vl~IaA~ 658 (1417)
+++|++ ++..|+|++||+..++..|++.|..+||||.++.||++|+.|+.||+||++|+||+.+..++|++++++|+|+
T Consensus 413 ~~~G~~~d~~~f~fld~P~~~~i~~A~~~L~~LGAld~~g~LT~lG~~ms~lpldprLA~mLl~a~~~g~~~e~~~Ias~ 492 (845)
T COG1643 413 KSLGIGQDIAPFPFLDPPPEAAIQAALTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASM 492 (845)
T ss_pred HhcCCCCCcccCccCCCCChHHHHHHHHHHHHcCCcCCCCCCCHHHHHHHhCCCChHHHHHHHhccccCcHHHHHHHHHh
Confidence 999996 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC---ccccCCCCCh---hHHHHH-hhccc---CCCChHHHHHHHHHHHHhhhhh--chHHHHHHHcCCCHHHHHHH
Q psy3476 659 LSVQS---PFTNRAFRDP---DCETAR-KELES---NHGDPLTVLNAYKEWLGVKKDR--VRSKKWCKRRGIEEQRFYEV 726 (1417)
Q Consensus 659 Lsv~~---~F~~~~~~~~---~~~~~r-~~f~~---~~sD~ltlln~f~~w~~~~~~~--~~~~~WC~~~~L~~~~L~ei 726 (1417)
||+++ .|..+..... +...++ ..+.+ ..+||++++++|..|+..+... ....+||..+.++.+.|.++
T Consensus 493 Ls~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 572 (845)
T COG1643 493 LSEQDRESDFSRDVKLRKQRTAQDLLKRLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTKALSRA 572 (845)
T ss_pred hccCCCcchhccccchhhHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHhhhccchhhHhcChhhhcCChhHHHhh
Confidence 99999 6777655444 222222 23334 5799999999999998765211 25679999999999999999
Q ss_pred HHHHHHHHHHHHH-CCCCcCCCCCCC----------------ChhHHHHHHhcCchHHHHHHHh
Q psy3476 727 TKLRSQFKQVLGD-SGLITDIPGPDA----------------SLSSRERALRHGEIKLLQAIKR 773 (1417)
Q Consensus 727 ~~lr~QL~~iL~~-~gl~~~~~~~~~----------------~~~s~~ral~~G~~~~L~~l~~ 773 (1417)
.+++.|+...... .|.+......+. ..+...+++.+|.+.++.++..
T Consensus 573 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~a~~~~~~~~~~~ 636 (845)
T COG1643 573 PWIIAALLVQTSALAGRILAAAEIDEDEWAAQHLPEHCYSEPIWDDIRGALAAGRKLNIAQLQL 636 (845)
T ss_pred HHHHHHHHHhhhccccchhhhcccCcchhhhhhhhhhhccchhHHHHhhhhhhheecceeeeec
Confidence 9999999888877 554433222221 1356778888888888877653
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-95 Score=933.30 Aligned_cols=559 Identities=35% Similarity=0.565 Sum_probs=502.9
Q ss_pred HHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC---CcEEEecchHHHHHHHHHHHHHHHcccc
Q psy3476 32 RETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIACISLSKRVAYETLSQY 108 (1417)
Q Consensus 32 ~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~---~~i~~tqPrr~aa~~~a~rva~e~~~~~ 108 (1417)
..++.+|||+.++++|+++|.+++++||+|+||||||||+||++++.+. +.|+||||||+||+++|+||++|+++.+
T Consensus 67 ~~~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~~~l 146 (1294)
T PRK11131 67 ITYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELETEL 146 (1294)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHhhhh
Confidence 4467899999999999999999999999999999999999999999765 3799999999999999999999999999
Q ss_pred CCeEEEEEeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhc
Q psy3476 109 SNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLK 188 (1417)
Q Consensus 109 g~~vGy~ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 188 (1417)
|..|||.|+++++.+..|+|+|||+|+|++++..+
T Consensus 147 G~~VGY~vrf~~~~s~~t~I~v~TpG~LL~~l~~d--------------------------------------------- 181 (1294)
T PRK11131 147 GGCVGYKVRFNDQVSDNTMVKLMTDGILLAEIQQD--------------------------------------------- 181 (1294)
T ss_pred cceeceeecCccccCCCCCEEEEChHHHHHHHhcC---------------------------------------------
Confidence 99999999999999999999999999999987544
Q ss_pred cccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCc
Q psy3476 189 ADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGE 268 (1417)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~ 268 (1417)
T Consensus 182 -------------------------------------------------------------------------------- 181 (1294)
T PRK11131 182 -------------------------------------------------------------------------------- 181 (1294)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhcc
Q psy3476 269 IVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHS 348 (1417)
Q Consensus 269 ~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~ 348 (1417)
+.|++|++|||||||||++++||++++++.+...
T Consensus 182 ----------------------------------------------~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~ 215 (1294)
T PRK11131 182 ----------------------------------------------RLLMQYDTIIIDEAHERSLNIDFILGYLKELLPR 215 (1294)
T ss_pred ----------------------------------------------CccccCcEEEecCccccccccchHHHHHHHhhhc
Confidence 4578899999999999999999999999998888
Q ss_pred CCCCcEEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcE
Q psy3476 349 TAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428 (1417)
Q Consensus 349 r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~i 428 (1417)
+++.|+|+||||++.+.|+++| .+++++.++|+.+|++++|.+....... ...+....++..+.... ....|++
T Consensus 216 rpdlKvILmSATid~e~fs~~F-~~apvI~V~Gr~~pVei~y~p~~~~~~~----~~~d~l~~ll~~V~~l~-~~~~GdI 289 (1294)
T PRK11131 216 RPDLKVIITSATIDPERFSRHF-NNAPIIEVSGRTYPVEVRYRPIVEEADD----TERDQLQAIFDAVDELG-REGPGDI 289 (1294)
T ss_pred CCCceEEEeeCCCCHHHHHHHc-CCCCEEEEcCccccceEEEeecccccch----hhHHHHHHHHHHHHHHh-cCCCCCE
Confidence 8899999999999999999999 5688999999999999999875432110 01112333444444333 3457899
Q ss_pred EEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcc
Q psy3476 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKV 508 (1417)
Q Consensus 429 LVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~ 508 (1417)
||||||+++|+.+++.|.+.. .....+.++||+|++++|.++|+. .|.++|||||||||+|||||+|+||||+|++
T Consensus 290 LVFLpg~~EIe~lae~L~~~~--~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~ 365 (1294)
T PRK11131 290 LIFMSGEREIRDTADALNKLN--LRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTA 365 (1294)
T ss_pred EEEcCCHHHHHHHHHHHHhcC--CCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCc
Confidence 999999999999999998632 234568999999999999999986 5789999999999999999999999999999
Q ss_pred cceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHHHhhccCCCcccccChHHHHHHHHhhCCCCCc
Q psy3476 509 KEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVR 588 (1417)
Q Consensus 509 k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~~l~~~~~pEI~r~~L~~~lL~lk~lgi~~~~ 588 (1417)
|.+.||+.++++.+...|||+++|.||+|||||.++|+||+||++++|..+++++.|||+|++|.+++|+++++|++++.
T Consensus 366 k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~~~~~~~~PEIlR~~L~~viL~lk~lgl~di~ 445 (1294)
T PRK11131 366 RISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIA 445 (1294)
T ss_pred cccccccccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCHHHHHhhhcccCCccccCCHHHHHHHHHHcCCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcchhHHHHHHHHhcCCCCCC-----CCcChhhhhccCCCCChhhHHHHHhhhccCChhhHHHHhhhccCCC
Q psy3476 589 KFPFLEAPPAENIESSVRSLTQHGAIDSK-----ERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQS 663 (1417)
Q Consensus 589 ~f~~l~pP~~~~l~~Al~~L~~lGaId~~-----~~lT~LG~~ls~lpldp~lak~Ll~~~~f~cle~vl~IaA~Lsv~~ 663 (1417)
.|+|++||+.++|..|++.|.++||||.+ ++||++|+.|++||+||++||||+.|+.|+|++++++|+|+||+++
T Consensus 446 ~F~fldpP~~~~i~~al~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~~evl~IaA~Lsv~d 525 (1294)
T PRK11131 446 AFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCVREVMIITSALSIQD 525 (1294)
T ss_pred eeeCCCCCCHHHHHHHHHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999864 4799999999999999999999999999999999999999999999
Q ss_pred ccccCCCCChhHHHHHhhcccCCCChHHHHHHHHHHHHhhhh--hchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCC
Q psy3476 664 PFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKD--RVRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSG 741 (1417)
Q Consensus 664 ~F~~~~~~~~~~~~~r~~f~~~~sD~ltlln~f~~w~~~~~~--~~~~~~WC~~~~L~~~~L~ei~~lr~QL~~iL~~~g 741 (1417)
||..|..++.+++..++.|.+..|||++++|+|+.|.+..+. ....++||++||||+.+|+++.+++.||.++++++|
T Consensus 526 pf~~p~~~~~~a~~~~~~f~~~~sD~lt~ln~~~~~~~~~~~~s~~~~~~~C~~~~L~~~~l~e~~~i~~QL~~~~~~~g 605 (1294)
T PRK11131 526 PRERPMDKQQASDEKHRRFADKESDFLAFVNLWNYLQEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELG 605 (1294)
T ss_pred cccCCchhHHHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 999998888888889999999999999999999999764321 224578999999999999999999999999999999
Q ss_pred CCcCCCCCCCChhHHHHHHhcCchHHHHHHHh
Q psy3476 742 LITDIPGPDASLSSRERALRHGEIKLLQAIKR 773 (1417)
Q Consensus 742 l~~~~~~~~~~~~s~~ral~~G~~~~L~~l~~ 773 (1417)
+....+ +.+.+.+++|+.+|++.|++....
T Consensus 606 ~~~~~~--~~~~~~i~~all~G~~~nva~~~~ 635 (1294)
T PRK11131 606 IPVNSE--PAEYREIHTALLTGLLSHIGMKDA 635 (1294)
T ss_pred CCCCCC--cccHHHHHHHHHhhcHHHHeeccC
Confidence 976553 335889999999999999986543
|
|
| >KOG0926|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-94 Score=847.95 Aligned_cols=541 Identities=37% Similarity=0.588 Sum_probs=467.9
Q ss_pred hchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCCC--------cEEEecchHHHHHHHH
Q psy3476 26 STLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ--------RIACTQPRRIACISLS 97 (1417)
Q Consensus 26 ~~~~~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~~--------~i~~tqPrr~aa~~~a 97 (1417)
++..+||+.|..|||....++|+++|..|.+|||||+||||||||+|||++|+|+. -|.+|||||+||+++|
T Consensus 243 ~R~~EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamA 322 (1172)
T KOG0926|consen 243 SRPAEIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMA 322 (1172)
T ss_pred cCcHHHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999983 3999999999999999
Q ss_pred HHHHHHHccccCCeEEEEEeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhh
Q psy3476 98 KRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKA 177 (1417)
Q Consensus 98 ~rva~e~~~~~g~~vGy~ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (1417)
+|||.|++. +|+.|||+|||++..++.|+|+|||+|+|||++.+|
T Consensus 323 kRVa~EL~~-~~~eVsYqIRfd~ti~e~T~IkFMTDGVLLrEi~~D---------------------------------- 367 (1172)
T KOG0926|consen 323 KRVAFELGV-LGSEVSYQIRFDGTIGEDTSIKFMTDGVLLREIEND---------------------------------- 367 (1172)
T ss_pred HHHHHHhcc-CccceeEEEEeccccCCCceeEEecchHHHHHHHHh----------------------------------
Confidence 999999998 999999999999999999999999999999998764
Q ss_pred hhhhHHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceee
Q psy3476 178 EEAPKRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLG 257 (1417)
Q Consensus 178 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~ 257 (1417)
++|+.||+||+||+|||++|+|+|||
T Consensus 368 ------------------------------------------------------flL~kYSvIIlDEAHERSvnTDILiG 393 (1172)
T KOG0926|consen 368 ------------------------------------------------------FLLTKYSVIILDEAHERSVNTDILIG 393 (1172)
T ss_pred ------------------------------------------------------HhhhhceeEEechhhhccchHHHHHH
Confidence 56777888888888888888888877
Q ss_pred ccCCCCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcch
Q psy3476 258 VISPPLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDF 337 (1417)
Q Consensus 258 ~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ 337 (1417)
|+|+....+. |-|
T Consensus 394 mLSRiV~LR~-----------------------------------------------------------k~~-------- 406 (1172)
T KOG0926|consen 394 MLSRIVPLRQ-----------------------------------------------------------KYY-------- 406 (1172)
T ss_pred HHHHHHHHHH-----------------------------------------------------------HHh--------
Confidence 7774221110 000
Q ss_pred HHHHHHHHhccCCCCcEEEEccCCCHHHHH---HHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHH
Q psy3476 338 LLGVIKCLLHSTAEVKIILMSATINIELFH---TYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILS 414 (1417)
Q Consensus 338 ll~llk~l~~~r~~~qvIlmSATln~~~~~---~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~ 414 (1417)
+. ...-..+|+|+||||+-+.+|. ..|...+|++.++.|+|||.+||......+|... .+ +...
T Consensus 407 -----ke-~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT~~DYi~e------Af-rKtc 473 (1172)
T KOG0926|consen 407 -----KE-QCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRTPDDYIAE------AF-RKTC 473 (1172)
T ss_pred -----hh-hcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCCCchHHHH------HH-HHHH
Confidence 00 0123578999999999888887 4676688999999999999999988776665331 12 2333
Q ss_pred HHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhh--------------------------------------------
Q psy3476 415 IIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNE-------------------------------------------- 450 (1417)
Q Consensus 415 ~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~-------------------------------------------- 450 (1417)
.|++. .+.|.||||++|+.++..+++.|++..+
T Consensus 474 ~IH~k---LP~G~ILVFvTGQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~e 550 (1172)
T KOG0926|consen 474 KIHKK---LPPGGILVFVTGQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDE 550 (1172)
T ss_pred HHhhc---CCCCcEEEEEeChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchh
Confidence 44544 4589999999999999999999976310
Q ss_pred --------------------------------------------------ccCCcEEEEecCCCCHHHHHHHhccCCCCC
Q psy3476 451 --------------------------------------------------KSQGWIVLPLHSTLSLEEQDRVFHYAPEGL 480 (1417)
Q Consensus 451 --------------------------------------------------~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~ 480 (1417)
....+-|+||||-|+.++|.+||+..+.|.
T Consensus 551 d~d~~~~~~~~~~~raa~~~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~ 630 (1172)
T KOG0926|consen 551 DIDQELVDSGFASLRAAFNALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGE 630 (1172)
T ss_pred hhhhhhhcccchhhhhhhhccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCc
Confidence 011457999999999999999999999999
Q ss_pred ceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHH-Hh
Q psy3476 481 RKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS-LL 559 (1417)
Q Consensus 481 rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~-~l 559 (1417)
|-||||||+||+|+|||+|+||||||+.|++.||..+|+++|...|||+|++.||+|||||+|||+|||||+...|+ .|
T Consensus 631 RLcVVaTNVAETSLTIPgIkYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~~~F 710 (1172)
T KOG0926|consen 631 RLCVVATNVAETSLTIPGIKYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSAVFSNDF 710 (1172)
T ss_pred eEEEEeccchhcccccCCeeEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhHHhhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998 79
Q ss_pred hccCCCcccccChHHHHHHHHhhCCCCCcCCCCCCCCCcchhHHHHHHHHhcCCCCCCCCcChhhhhccCCCCChhhHHH
Q psy3476 560 AEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKM 639 (1417)
Q Consensus 560 ~~~~~pEI~r~~L~~~lL~lk~lgi~~~~~f~~l~pP~~~~l~~Al~~L~~lGaId~~~~lT~LG~~ls~lpldp~lak~ 639 (1417)
.++..|||++.|.++++|+||+|+|.++..|||++||...+++.|...|..+||||.+|.+|+||+.||.||+.|+++||
T Consensus 711 e~fS~PEIlk~Pve~lvLqMKsMnI~kVvnFPFPtpPd~~~L~~Aer~L~~LgALd~~g~lT~lGk~mS~FPlsPrfsKm 790 (1172)
T KOG0926|consen 711 EEFSLPEILKKPVESLVLQMKSMNIDKVVNFPFPTPPDRSALEKAERRLKALGALDSNGGLTKLGKAMSLFPLSPRFSKM 790 (1172)
T ss_pred hhhccHHHhhCcHHHHHHHHHhcCccceecCCCCCCccHHHHHHHHHHHHHhccccccCCcccccchhcccccChhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCChhhHHHHhhhccCCCccccCCCC-----------Ch-------------hH--------HHHHhhcccCCC
Q psy3476 640 LVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFR-----------DP-------------DC--------ETARKELESNHG 687 (1417)
Q Consensus 640 Ll~~~~f~cle~vl~IaA~Lsv~~~F~~~~~~-----------~~-------------~~--------~~~r~~f~~~~s 687 (1417)
|+.+.+..|+...+.++++||+..+|...... ++ +. .+++..|....|
T Consensus 791 L~~~~Q~~~lpy~i~lvsaLsv~e~~i~~~~ll~n~~~r~~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~~l~s 870 (1172)
T KOG0926|consen 791 LATSDQHNLLPYNIALVSALSVYEVLIVAASLLPNPLIREFEPEEKDLIKDDETVEDKELKKRRREKSKAARSRFSNLDS 870 (1172)
T ss_pred HHHHHhhcchhHHHHHHHHHhccchhhhhhhcccccccccCCcchhhccccccccccHHHHHHHHHHHHHHHhhhccCCc
Confidence 99999999999999999999999888652110 00 00 113344555678
Q ss_pred ChHHHHHHHHHHHHhhhhhchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCCC
Q psy3476 688 DPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGL 742 (1417)
Q Consensus 688 D~ltlln~f~~w~~~~~~~~~~~~WC~~~~L~~~~L~ei~~lr~QL~~iL~~~gl 742 (1417)
|.++++.+..++..+. +..+||..|||..++|.|+.+||.||..++...++
T Consensus 871 d~l~Ll~Av~a~ey~~----~~~rfc~~ngLr~Kam~Ev~KLR~QL~~lv~~~~i 921 (1172)
T KOG0926|consen 871 DALVLLSAVSAAEYAE----NGMRFCEANGLRLKAMEEVRKLRKQLTNLVNHGNI 921 (1172)
T ss_pred cHHHHHHHHHHHHhhh----hcchhHHhcchHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 9999999988876553 34459999999999999999999999999985544
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-92 Score=916.84 Aligned_cols=559 Identities=35% Similarity=0.573 Sum_probs=502.6
Q ss_pred HHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC---CcEEEecchHHHHHHHHHHHHHHHccc
Q psy3476 31 IRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIACISLSKRVAYETLSQ 107 (1417)
Q Consensus 31 ~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~---~~i~~tqPrr~aa~~~a~rva~e~~~~ 107 (1417)
...++..|||+.++++|+++|.+++++||+|+||||||||+|+++++.+. ++|+||||||+||+++|+|||+|+++.
T Consensus 59 ~~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~ 138 (1283)
T TIGR01967 59 EIRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTP 138 (1283)
T ss_pred cccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCC
Confidence 34567889999999999999999999999999999999999999999875 479999999999999999999999999
Q ss_pred cCCeEEEEEeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhh
Q psy3476 108 YSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKML 187 (1417)
Q Consensus 108 ~g~~vGy~ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 187 (1417)
+|..|||+||++++.+.+|+|+|||+|+|+++++.|
T Consensus 139 lG~~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~d-------------------------------------------- 174 (1283)
T TIGR01967 139 LGEKVGYKVRFHDQVSSNTLVKLMTDGILLAETQQD-------------------------------------------- 174 (1283)
T ss_pred cceEEeeEEcCCcccCCCceeeeccccHHHHHhhhC--------------------------------------------
Confidence 999999999999999999999999999999987654
Q ss_pred ccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCC
Q psy3476 188 KADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGG 267 (1417)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~ 267 (1417)
T Consensus 175 -------------------------------------------------------------------------------- 174 (1283)
T TIGR01967 175 -------------------------------------------------------------------------------- 174 (1283)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhc
Q psy3476 268 EIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLH 347 (1417)
Q Consensus 268 ~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~ 347 (1417)
+.|++|++|||||||||++++|+++++++.+..
T Consensus 175 -----------------------------------------------~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~ 207 (1283)
T TIGR01967 175 -----------------------------------------------RFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLP 207 (1283)
T ss_pred -----------------------------------------------cccccCcEEEEcCcchhhccchhHHHHHHHHHh
Confidence 457889999999999999999999999999988
Q ss_pred cCCCCcEEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCc
Q psy3476 348 STAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427 (1417)
Q Consensus 348 ~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~ 427 (1417)
.++++|+|+||||++.+.|++|| .+++++.++|+.+|++++|.+........ +......++..+.+.+. ...|+
T Consensus 208 ~rpdLKlIlmSATld~~~fa~~F-~~apvI~V~Gr~~PVev~Y~~~~~~~~~~----~~~~~~~i~~~I~~l~~-~~~Gd 281 (1283)
T TIGR01967 208 RRPDLKIIITSATIDPERFSRHF-NNAPIIEVSGRTYPVEVRYRPLVEEQEDD----DLDQLEAILDAVDELFA-EGPGD 281 (1283)
T ss_pred hCCCCeEEEEeCCcCHHHHHHHh-cCCCEEEECCCcccceeEEecccccccch----hhhHHHHHHHHHHHHHh-hCCCC
Confidence 88999999999999999999999 57899999999999999997653211100 11122334444544433 35689
Q ss_pred EEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCc
Q psy3476 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGK 507 (1417)
Q Consensus 428 iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~ 507 (1417)
||||+||+++|+.+++.|.+.. ..++.+.++||+|++++|.++|+.+ +.+||||||||||+|||||+|+||||+|+
T Consensus 282 ILVFLpg~~EI~~l~~~L~~~~--~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl 357 (1283)
T TIGR01967 282 ILIFLPGEREIRDAAEILRKRN--LRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGT 357 (1283)
T ss_pred EEEeCCCHHHHHHHHHHHHhcC--CCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCC
Confidence 9999999999999999998632 2357899999999999999999875 35899999999999999999999999999
Q ss_pred ccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHHHhhccCCCcccccChHHHHHHHHhhCCCCC
Q psy3476 508 VKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDV 587 (1417)
Q Consensus 508 ~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~~l~~~~~pEI~r~~L~~~lL~lk~lgi~~~ 587 (1417)
.|.+.||+.++++.+...|||+++|.||+|||||.++|+||+||+++++..+++++.|||+|.+|.+++|+++++|++++
T Consensus 358 ~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~~~~~~~~PEIlR~~L~~viL~l~~lg~~di 437 (1283)
T TIGR01967 358 ARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAPGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMLALRLGDI 437 (1283)
T ss_pred ccccccccccCccccCCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHHhhhhccCcccccccHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCcchhHHHHHHHHhcCCCCCCC---CcChhhhhccCCCCChhhHHHHHhhhccCChhhHHHHhhhccCCCc
Q psy3476 588 RKFPFLEAPPAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSP 664 (1417)
Q Consensus 588 ~~f~~l~pP~~~~l~~Al~~L~~lGaId~~~---~lT~LG~~ls~lpldp~lak~Ll~~~~f~cle~vl~IaA~Lsv~~~ 664 (1417)
..|+|++||+..++..|++.|..+||||.++ +||++|+.|+.||++|++||||+.|..++|++++++|+|+||+++|
T Consensus 438 ~~f~fldpP~~~~i~~A~~~L~~LGAld~~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~IaA~Ls~~dp 517 (1283)
T TIGR01967 438 AAFPFIEAPDPRAIRDGFRLLEELGALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIASALSIQDP 517 (1283)
T ss_pred ccccCCCCCCHHHHHHHHHHHHHCCCCCCCCCCccccHHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCc
Confidence 9999999999999999999999999999988 7999999999999999999999999999999999999999999999
Q ss_pred cccCCCCChhHHHHHhhcccCCCChHHHHHHHHHHHHhhhhh--chHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCCC
Q psy3476 665 FTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDR--VRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGL 742 (1417)
Q Consensus 665 F~~~~~~~~~~~~~r~~f~~~~sD~ltlln~f~~w~~~~~~~--~~~~~WC~~~~L~~~~L~ei~~lr~QL~~iL~~~gl 742 (1417)
|..|..++..++..++.|....|||++++|+|+.|.+.+... ...++||++||||+.+|+++.++++||.++++++|+
T Consensus 518 ~~~p~~~~~~a~~~~~~f~~~~sD~l~~L~~~~~~~~~~~~~~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~~~~~~~~~ 597 (1283)
T TIGR01967 518 RERPMEKQQAADQAHARFKDPRSDFLSRVNLWRHIEEQRQALSANQFRNACRKQYLNYLRVREWQDIYRQLTQVVKELGL 597 (1283)
T ss_pred CCCcchhHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhccchHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999888888888899999999999999999999997643221 245799999999999999999999999999999998
Q ss_pred CcCCCCCCCChhHHHHHHhcCchHHHHHHH
Q psy3476 743 ITDIPGPDASLSSRERALRHGEIKLLQAIK 772 (1417)
Q Consensus 743 ~~~~~~~~~~~~s~~ral~~G~~~~L~~l~ 772 (1417)
....+. .+.+.+.+++.+|++.+++...
T Consensus 598 ~~~~~~--~~~~~i~~~l~~g~~~~iA~~~ 625 (1283)
T TIGR01967 598 KLNEEP--ADYDAIHKALLSGLLSQIGMKD 625 (1283)
T ss_pred CcCCCC--ccHHHHHHHHHHhhHHHHheeC
Confidence 654432 2456799999999999988654
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-76 Score=755.18 Aligned_cols=444 Identities=32% Similarity=0.496 Sum_probs=405.2
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC--CcEEEecchHHHHHHHHHHHHHHHccccCCeEEEE
Q psy3476 38 LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF--QRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQ 115 (1417)
Q Consensus 38 lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~--~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy~ 115 (1417)
|||+.+.++|+++|.+++++||+|+|||||||++|+++++... ++|+|+||||++|+++|+|+++++++.+|..|||.
T Consensus 1 LPi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~ 80 (819)
T TIGR01970 1 LPIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYR 80 (819)
T ss_pred CCchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEE
Confidence 7999999999999999999999999999999999999998753 58999999999999999999999999999999999
Q ss_pred EeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhccccchhh
Q psy3476 116 IRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEI 195 (1417)
Q Consensus 116 ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 195 (1417)
++++++.+.+|+|+|+|+|+|++++..+
T Consensus 81 vr~~~~~s~~t~I~v~T~G~Llr~l~~d---------------------------------------------------- 108 (819)
T TIGR01970 81 VRGENKVSRRTRLEVVTEGILTRMIQDD---------------------------------------------------- 108 (819)
T ss_pred EccccccCCCCcEEEECCcHHHHHHhhC----------------------------------------------------
Confidence 9999999999999999999999877543
Q ss_pred hhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCcccccccc
Q psy3476 196 EEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIVAADYF 275 (1417)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~~~~~~~ 275 (1417)
T Consensus 109 -------------------------------------------------------------------------------- 108 (819)
T TIGR01970 109 -------------------------------------------------------------------------------- 108 (819)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhc-cCCCCcE
Q psy3476 276 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLH-STAEVKI 354 (1417)
Q Consensus 276 l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~-~r~~~qv 354 (1417)
+.|++|++|||||+|||++++|+++++++.+.. .+++.|+
T Consensus 109 ---------------------------------------~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlql 149 (819)
T TIGR01970 109 ---------------------------------------PELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKI 149 (819)
T ss_pred ---------------------------------------cccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceE
Confidence 457789999999999999999999888876654 5789999
Q ss_pred EEEccCCCHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCC
Q psy3476 355 ILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSG 434 (1417)
Q Consensus 355 IlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~ 434 (1417)
|+||||++.+.+.+|| ++++++.++|+.+|++++|.+....++. ...+...+.+.+. ...|++||||||
T Consensus 150 IlmSATl~~~~l~~~l-~~~~vI~~~gr~~pVe~~y~~~~~~~~~---------~~~v~~~l~~~l~-~~~g~iLVFlpg 218 (819)
T TIGR01970 150 LAMSATLDGERLSSLL-PDAPVVESEGRSFPVEIRYLPLRGDQRL---------EDAVSRAVEHALA-SETGSILVFLPG 218 (819)
T ss_pred EEEeCCCCHHHHHHHc-CCCcEEEecCcceeeeeEEeecchhhhH---------HHHHHHHHHHHHH-hcCCcEEEEECC
Confidence 9999999999999999 5788999999999999998764322110 0111222222222 236899999999
Q ss_pred HHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecc
Q psy3476 435 ISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYD 514 (1417)
Q Consensus 435 ~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD 514 (1417)
+++|+.+++.|.+... .++.+.++||+|++++|.++++.|++|++||||||||||+|||||+|++|||+|+.|...||
T Consensus 219 ~~eI~~l~~~L~~~~~--~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd 296 (819)
T TIGR01970 219 QAEIRRVQEQLAERLD--SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFD 296 (819)
T ss_pred HHHHHHHHHHHHhhcC--CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccc
Confidence 9999999999976321 46899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHHHhhccCCCcccccChHHHHHHHHhhCCCCCcCCCCCC
Q psy3476 515 VTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLE 594 (1417)
Q Consensus 515 ~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~~l~~~~~pEI~r~~L~~~lL~lk~lgi~~~~~f~~l~ 594 (1417)
+.++++.+.+.|||+++|.||+|||||.++|+||+||+++++..+.++..|||.+.+|.+++|+++++|+.++..|+|++
T Consensus 297 ~~~g~~~L~~~~iSkasa~QR~GRAGR~~~G~cyrL~t~~~~~~l~~~~~PEI~r~~L~~~~L~l~~~g~~~~~~~~~l~ 376 (819)
T TIGR01970 297 PKTGITRLETVRISQASATQRAGRAGRLEPGVCYRLWSEEQHQRLPAQDEPEILQADLSGLALELAQWGAKDPSDLRWLD 376 (819)
T ss_pred cccCCceeeEEEECHHHHHhhhhhcCCCCCCEEEEeCCHHHHHhhhcCCCcceeccCcHHHHHHHHHcCCCChhhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhHHHHHHHHhcCCCCCCCCcChhhhhccCCCCChhhHHHHHhhhccCChhhHHHHhhhccCCCcc
Q psy3476 595 APPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPF 665 (1417)
Q Consensus 595 pP~~~~l~~Al~~L~~lGaId~~~~lT~LG~~ls~lpldp~lak~Ll~~~~f~cle~vl~IaA~Lsv~~~F 665 (1417)
||+.+++..|++.|..+||||.+++||++|+.|+.||++|++||||+.|+.++|.+++++|||+|+.++++
T Consensus 377 ~P~~~~i~~a~~~L~~lgald~~~~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~~~~ 447 (819)
T TIGR01970 377 APPSVALAAARQLLQRLGALDAQGRLTAHGKAMAALGCHPRLAAMLLSAHSTGLAALACDLAALLEERGLP 447 (819)
T ss_pred CcCHHHHHHHHHHHHHCCCCCCCCCcCHHHHHHHhcCCCHHHHHHHHHhhhcCCHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998864
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-74 Score=731.38 Aligned_cols=441 Identities=34% Similarity=0.513 Sum_probs=397.2
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC--CcEEEecchHHHHHHHHHHHHHHHccccCCeEEE
Q psy3476 37 SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF--QRIACTQPRRIACISLSKRVAYETLSQYSNLVGY 114 (1417)
Q Consensus 37 ~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~--~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy 114 (1417)
.|||+.+.++|++++.+++++||+|+|||||||++|+++++.+. .+|+|+||||++|+++|++++.++++.+|..|||
T Consensus 3 ~LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy 82 (812)
T PRK11664 3 SLPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGY 82 (812)
T ss_pred CCCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEE
Confidence 59999999999999999999999999999999999999998754 5899999999999999999999999999999999
Q ss_pred EEeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhccccchh
Q psy3476 115 QIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYE 194 (1417)
Q Consensus 115 ~ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 194 (1417)
.++++++.+.+|+|+|+|+|+|++.+..+
T Consensus 83 ~vr~~~~~~~~t~I~v~T~G~Llr~l~~d--------------------------------------------------- 111 (812)
T PRK11664 83 RMRAESKVGPNTRLEVVTEGILTRMIQRD--------------------------------------------------- 111 (812)
T ss_pred EecCccccCCCCcEEEEChhHHHHHHhhC---------------------------------------------------
Confidence 99999999999999999999999876543
Q ss_pred hhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCccccccc
Q psy3476 195 IEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIVAADY 274 (1417)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~~~~~~ 274 (1417)
T Consensus 112 -------------------------------------------------------------------------------- 111 (812)
T PRK11664 112 -------------------------------------------------------------------------------- 111 (812)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhc-cCCCCc
Q psy3476 275 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLH-STAEVK 353 (1417)
Q Consensus 275 ~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~-~r~~~q 353 (1417)
+.|+++++|||||+|||++++|+.+++++.+.. .++++|
T Consensus 112 ----------------------------------------~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lq 151 (812)
T PRK11664 112 ----------------------------------------PELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLK 151 (812)
T ss_pred ----------------------------------------CCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccce
Confidence 457889999999999999999999888776654 578999
Q ss_pred EEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeC
Q psy3476 354 IILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMS 433 (1417)
Q Consensus 354 vIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~ 433 (1417)
+|+||||++.+.+.+|| .+++++.++|+.+|++.+|.+....++. ...+...+.+.+. ...|++|||||
T Consensus 152 lilmSATl~~~~l~~~~-~~~~~I~~~gr~~pV~~~y~~~~~~~~~---------~~~v~~~l~~~l~-~~~g~iLVFlp 220 (812)
T PRK11664 152 LLIMSATLDNDRLQQLL-PDAPVIVSEGRSFPVERRYQPLPAHQRF---------DEAVARATAELLR-QESGSLLLFLP 220 (812)
T ss_pred EEEEecCCCHHHHHHhc-CCCCEEEecCccccceEEeccCchhhhH---------HHHHHHHHHHHHH-hCCCCEEEEcC
Confidence 99999999999999999 5788999999999999998765432210 1112222333332 34689999999
Q ss_pred CHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceec
Q psy3476 434 GISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSY 513 (1417)
Q Consensus 434 ~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~y 513 (1417)
|+++|+.+++.|.+... .++.+.++||+|++++|+++++.|++|++||||||||||+|||||+|++|||+|+.|...|
T Consensus 221 g~~ei~~l~~~L~~~~~--~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~y 298 (812)
T PRK11664 221 GVGEIQRVQEQLASRVA--SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARF 298 (812)
T ss_pred CHHHHHHHHHHHHHhcc--CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccc
Confidence 99999999999986321 4688999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHHHhhccCCCcccccChHHHHHHHHhhCCCCCcCCCCC
Q psy3476 514 DVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFL 593 (1417)
Q Consensus 514 D~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~~l~~~~~pEI~r~~L~~~lL~lk~lgi~~~~~f~~l 593 (1417)
|+..+++.+.+.|||+++|.||+|||||.++|.||+||+++++..+.++..|||++.+|++++|.++++|+.++..|+|+
T Consensus 299 d~~~g~~~L~~~~iSkasa~QR~GRaGR~~~G~cyrL~t~~~~~~l~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~~~l 378 (812)
T PRK11664 299 DPKTGLTRLVTQRISQASMTQRAGRAGRLEPGICLHLYSKEQAERAAAQSEPEILHSDLSGLLLELLQWGCHDPAQLSWL 378 (812)
T ss_pred cccCCcceeEEEeechhhhhhhccccCCCCCcEEEEecCHHHHhhCccCCCCceeccchHHHHHHHHHcCCCCHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcchhHHHHHHHHhcCCCCCCCCcChhhhhccCCCCChhhHHHHHhhhccCChh--hHHHHhhhccC
Q psy3476 594 EAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQID--TVLSLAAVLSV 661 (1417)
Q Consensus 594 ~pP~~~~l~~Al~~L~~lGaId~~~~lT~LG~~ls~lpldp~lak~Ll~~~~f~cle--~vl~IaA~Lsv 661 (1417)
+||+..++.+|++.|+.+||||.+++||++|+.|+.||++|++||||+.|..++|.. .+..++|+|+.
T Consensus 379 d~P~~~~~~~A~~~L~~lgald~~g~lT~~G~~m~~lp~~Prla~~ll~a~~~~~~~l~~a~~laall~e 448 (812)
T PRK11664 379 DQPPAAALAAAKRLLQQLGALDGQGRLTARGRKMAALGNDPRLAAMLVAAKEDDEAALATAAKLAAILEE 448 (812)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCcCHHHHHHHhcCCchHHHHHHHHHHhcCchhhHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999999999999999998642 45566666654
|
|
| >KOG0921|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-64 Score=600.01 Aligned_cols=565 Identities=30% Similarity=0.486 Sum_probs=460.1
Q ss_pred hchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC-------CcEEEecchHHHHHHHHH
Q psy3476 26 STLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF-------QRIACTQPRRIACISLSK 98 (1417)
Q Consensus 26 ~~~~~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~-------~~i~~tqPrr~aa~~~a~ 98 (1417)
..+.++.++|..|||..+..+|++++..+++++|-++||||||||+.|+|+|+-. ..+.++||||+.|+.+|+
T Consensus 365 ~e~~~~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiae 444 (1282)
T KOG0921|consen 365 EALDKITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAE 444 (1282)
T ss_pred cchhhhhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHH
Confidence 3678899999999999999999999999999999999999999999999999643 469999999999999999
Q ss_pred HHHHHHccccCCeEEEEEeeccccc-CCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhh
Q psy3476 99 RVAYETLSQYSNLVGYQIRFEKHRR-EKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKA 177 (1417)
Q Consensus 99 rva~e~~~~~g~~vGy~ir~e~~~~-~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (1417)
||+.|+++.+|++|||++|+++.++ +...|.|||.|++++++.+.
T Consensus 445 rva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~g---------------------------------- 490 (1282)
T KOG0921|consen 445 RVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMENG---------------------------------- 490 (1282)
T ss_pred HHHHhhHHhhcccccccccccccccccccceeeeccchhhhhhhhc----------------------------------
Confidence 9999999999999999999999875 56789999999999988654
Q ss_pred hhhhHHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceee
Q psy3476 178 EEAPKRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLG 257 (1417)
Q Consensus 178 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~ 257 (1417)
+-..+|+|+||.|+|++++|||..
T Consensus 491 --------------------------------------------------------lrg~sh~i~deiherdv~~dfll~ 514 (1282)
T KOG0921|consen 491 --------------------------------------------------------LRGISHVIIDEIHERDVDTDFVLI 514 (1282)
T ss_pred --------------------------------------------------------ccccccccchhhhhhccchHHHHH
Confidence 235678888888888888887653
Q ss_pred ccCCCCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcch
Q psy3476 258 VISPPLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDF 337 (1417)
Q Consensus 258 ~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ 337 (1417)
++. .+......+.||.|++.+++|+
T Consensus 515 ~lr-------------------------------------------------------~m~~ty~dl~v~lmsatIdTd~ 539 (1282)
T KOG0921|consen 515 VLR-------------------------------------------------------EMISTYRDLRVVLMSATIDTDL 539 (1282)
T ss_pred HHH-------------------------------------------------------hhhccchhhhhhhhhcccchhh
Confidence 321 2233455677888888888888
Q ss_pred HHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEecccc----cccccccc-CCCC------
Q psy3476 338 LLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIV----ELDRTKSE-KLDP------ 406 (1417)
Q Consensus 338 ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~----~~~~~~~~-~~~~------ 406 (1417)
+..++..+ .++.++++|+|.+.|..++ -.+++..+++++.+.+..+.... ..+..+.. ....
T Consensus 540 f~~~f~~~------p~~~~~grt~pvq~F~led-~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~ 612 (1282)
T KOG0921|consen 540 FTNFFSSI------PDVTVHGRTFPVQSFFLED-IIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNES 612 (1282)
T ss_pred hhhhhccc------cceeeccccccHHHHHHHH-hhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcch
Confidence 77766544 3457888888877776665 46777778887777765443221 11111100 0000
Q ss_pred -----------ChHHHHHHHHHh-hCCCCCCCcEEEEeCCHHHHHHHHHHHHhhh--hccCCcEEEEecCCCCHHHHHHH
Q psy3476 407 -----------GPYIRILSIIDK-KYPRTERGDVLIFMSGISEISSIVRAAQEYN--EKSQGWIVLPLHSTLSLEEQDRV 472 (1417)
Q Consensus 407 -----------~~~~~il~~l~~-~~~~~~~g~iLVFl~~~~eie~la~~L~~~~--~~~~~~~V~~LHs~Ls~~eR~~v 472 (1417)
.....+.+.+.. +....-.|.|+||+|+.+++..+...+..+. .+...+.++++|+.++.+++.+|
T Consensus 613 ~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkv 692 (1282)
T KOG0921|consen 613 TRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKV 692 (1282)
T ss_pred hhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhc
Confidence 001122332222 2223446899999999999999999886543 34567889999999999999999
Q ss_pred hccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecC
Q psy3476 473 FHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYS 552 (1417)
Q Consensus 473 ~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t 552 (1417)
++..+.|..|+|++|+++++++||.++++|||+++++.+.|.....+..|.+.|.|+-+..||.||+||..+|.|+++.+
T Consensus 693 f~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs 772 (1282)
T KOG0921|consen 693 FEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCS 772 (1282)
T ss_pred cCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhccCCCcccccChHHHHHHHHhhCCCCCcCC--CCCCCCCcchhHHHHHHHHhcCCCCCCCCcChhhhhccCC
Q psy3476 553 EEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKF--PFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDL 630 (1417)
Q Consensus 553 ~~~~~~l~~~~~pEI~r~~L~~~lL~lk~lgi~~~~~f--~~l~pP~~~~l~~Al~~L~~lGaId~~~~lT~LG~~ls~l 630 (1417)
...|+.+.+...||+.+.++..+.|..|.+....+..| -.+.||+.+++..+-..|...+++|.++.+|++|+.++++
T Consensus 773 ~arF~~l~~~~t~em~r~plhemalTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m~~ld~n~elt~lg~~la~l 852 (1282)
T KOG0921|consen 773 RARFEALEDHGTAEMFRTPLHEIALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREMGALDANDELTPLGRMLARL 852 (1282)
T ss_pred HHHHHHHHhcCcHhhhcCccHHHHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHhhhhhccCcccchhhhhhhc
Confidence 99999999999999999999999999998877777766 4689999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHhhhccCChhhHHHHhhhccCCCccccCCCCChhHHHHHhhccc-CCCChHHHHHHHHHHHHhhhhh-ch
Q psy3476 631 PVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELES-NHGDPLTVLNAYKEWLGVKKDR-VR 708 (1417)
Q Consensus 631 pldp~lak~Ll~~~~f~cle~vl~IaA~Lsv~~~F~~~~~~~~~~~~~r~~f~~-~~sD~ltlln~f~~w~~~~~~~-~~ 708 (1417)
|+.|.++||++.+..++|.+-+..+|+..+...+|..........+-.++.|.. .-+||.+...+-+.|......+ ..
T Consensus 853 ~iep~~~k~~~lg~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl~g~q~~~~g~kfsdhva~~~v~q~~r~~~q~ga~~ 932 (1282)
T KOG0921|consen 853 PIEPRIGKMMILGTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSGTQRKFAGNKFSDHVAIVSVIQGYREAVQMGAAA 932 (1282)
T ss_pred cCcccccceeeechhhccchhhhhhhcccccccccccccccccccccchhhccccccccchhhhhhhhhhHHHhhhhhhh
Confidence 999999999999999999999999999999998887644333333333445543 3467766666655554433222 35
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCCC
Q psy3476 709 SKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGL 742 (1417)
Q Consensus 709 ~~~WC~~~~L~~~~L~ei~~lr~QL~~iL~~~gl 742 (1417)
.++||.+++++...+......++|+++.|+.+++
T Consensus 933 e~efc~r~~l~~~~~~~t~~a~~ql~d~L~q~~f 966 (1282)
T KOG0921|consen 933 EREFCERYSLSNPVLKMTDGARRQLIDVLRQCSF 966 (1282)
T ss_pred hhhHhHhhhhcchhhhhhhhhHHHHHHHHHhccC
Confidence 6799999999999999999999999999987665
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-52 Score=519.84 Aligned_cols=300 Identities=20% Similarity=0.331 Sum_probs=237.1
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCC--HHHHHHHhccCceEEEeCCcc-cceeEEec
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATIN--IELFHTYFNRIAKIIKVPGRL-YPIQLEYH 391 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln--~~~~~~~f~~~~~vi~v~gr~-~pv~v~~~ 391 (1417)
..|+++++|||||||||...+|+++.+++.+... ..|+++||||++ .+.+.+|| ++++.+.++++. +|++.+|.
T Consensus 287 ~~L~~v~~VVIDEaHEr~~~~DllL~llk~~~~~--~rq~ILmSATl~~dv~~l~~~~-~~p~~I~I~grt~~pV~~~yi 363 (675)
T PHA02653 287 NKLFDYGTVIIDEVHEHDQIGDIIIAVARKHIDK--IRSLFLMTATLEDDRDRIKEFF-PNPAFVHIPGGTLFPISEVYV 363 (675)
T ss_pred cccccCCEEEccccccCccchhHHHHHHHHhhhh--cCEEEEEccCCcHhHHHHHHHh-cCCcEEEeCCCcCCCeEEEEe
Confidence 4578899999999999999999998888765432 248999999994 66888998 578889999985 99999887
Q ss_pred cccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHH
Q psy3476 392 PIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDR 471 (1417)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~ 471 (1417)
+............. .....++..+.+.. ...++++||||||+++++.+++.|.+.. +++.+.++||+|++.+ +
T Consensus 364 ~~~~~~~~~~~y~~-~~k~~~l~~L~~~~-~~~~g~iLVFlpg~~ei~~l~~~L~~~~---~~~~v~~LHG~Lsq~e--q 436 (675)
T PHA02653 364 KNKYNPKNKRAYIE-EEKKNIVTALKKYT-PPKGSSGIVFVASVSQCEEYKKYLEKRL---PIYDFYIIHGKVPNID--E 436 (675)
T ss_pred ecCcccccchhhhH-HHHHHHHHHHHHhh-cccCCcEEEEECcHHHHHHHHHHHHhhc---CCceEEeccCCcCHHH--H
Confidence 54321111100000 11122333333221 1235799999999999999999997632 3688999999999864 4
Q ss_pred HhccC-CCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEe
Q psy3476 472 VFHYA-PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRL 550 (1417)
Q Consensus 472 v~~~f-~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L 550 (1417)
+++.| ++|+++||||||+||||||||+|++|||+|+++.+. +..+ .+.|+|+++|.||+|||||.++|.||+|
T Consensus 437 ~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~--~~~g----~~~~iSkasa~QRaGRAGR~~~G~c~rL 510 (675)
T PHA02653 437 ILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPE--PFGG----KEMFISKSMRTQRKGRVGRVSPGTYVYF 510 (675)
T ss_pred HHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCC--cccC----cccccCHHHHHHhccCcCCCCCCeEEEE
Confidence 44555 789999999999999999999999999999877652 2222 3569999999999999999999999999
Q ss_pred cCHHHHHHhhccCCCcccccC---hHHHHHHHHhhCCCCCcCCCCCCCCCcchhHHHHHHHHhcCCCCCCCCcChh--hh
Q psy3476 551 YSEEQYSLLAEYSTPEIRRVS---IDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSL--GR 625 (1417)
Q Consensus 551 ~t~~~~~~l~~~~~pEI~r~~---L~~~lL~lk~lgi~~~~~f~~l~pP~~~~l~~Al~~L~~lGaId~~~~lT~L--G~ 625 (1417)
|++++. .| |.+.+ |..++|+++++|+... .+.|++||+.+++..|++.|..+||+|+ ++|.+ |+
T Consensus 511 yt~~~~-------~p-I~ri~~~~L~~~vL~lk~~g~~~~-~~~~ldpP~~~~l~~A~~~L~~lga~~~--~l~~l~~~~ 579 (675)
T PHA02653 511 YDLDLL-------KP-IKRIDSEFLHNYILYAKYFNLTLP-EDLFVIPSNLDRLRKTEEYIDSFNISIE--KWYEILSNY 579 (675)
T ss_pred ECHHHh-------HH-HHHHhHHHHHHHHHHHHHcCCCCc-ccccCCCCCHHHHHHHHHHHHHcCCCch--hhhhhhccc
Confidence 999875 23 55555 8999999999999544 4559999999999999999999998754 79999 99
Q ss_pred hccCCCCChhhHHHHHhhhc
Q psy3476 626 FLSDLPVDIPLGKMLVFGSM 645 (1417)
Q Consensus 626 ~ls~lpldp~lak~Ll~~~~ 645 (1417)
.++.+ +.||++++|+.
T Consensus 580 ~~~~~----~~~k~~~~g~~ 595 (675)
T PHA02653 580 YVNML----EYAKIYVKGGI 595 (675)
T ss_pred cHHHH----HHhHHHhcccH
Confidence 99998 99999998864
|
|
| >KOG0922|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-55 Score=522.05 Aligned_cols=212 Identities=25% Similarity=0.458 Sum_probs=208.5
Q ss_pred hhhhHHHhhhccccccCCCcccccccHHHHhhhhcCCccchhhcchHHHHHHHHHhcCCCcccCCCCCCCCccchHHHHH
Q psy3476 795 EEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 874 (1417)
Q Consensus 795 ~s~~~~~qR~~~agR~~pG~CyRLyt~~~~~~l~~~~~PEI~r~~L~~~vL~lk~~g~~~~~~f~~l~~P~~~~l~~A~~ 874 (1417)
+||++|.||+|||||++||+||||||+++|+.|++.++|||+|++|+.++|+||++|++|+..|+|+|||+.+++..|++
T Consensus 363 ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~~~~~~~PEI~R~~Ls~~vL~Lkalgi~d~l~F~f~d~P~~~~l~~AL~ 442 (674)
T KOG0922|consen 363 ISKASANQRAGRAGRTGPGKCYRLYTESAYDKMPLQTVPEIQRVNLSSAVLQLKALGINDPLRFPFIDPPPPEALEEALE 442 (674)
T ss_pred chHHHHhhhcccCCCCCCceEEEeeeHHHHhhcccCCCCceeeechHHHHHHHHhcCCCCcccCCCCCCCChHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccccccccch-hhhhcccCCCCccccchhhhcccccchhhHHHHHHhhccccccchhhhcccc-cccCCCCccC
Q psy3476 875 SLTQHGAIDSKERVTT-LGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVTSLG-RFLSDLPVDI 952 (1417)
Q Consensus 875 ~L~~lgald~~~~lT~-lG~~l~~lPvdp~lak~Ll~~~~~~cl~~~l~i~a~ls~~~~~~~~~~~~~~-~~~~~~~f~~ 952 (1417)
.|+.+||||++|.||. +|++|+.+|++|.++|||+.+..+||++++++|||+||.++++.++.+.+.. ++.++..|..
T Consensus 443 ~L~~lgald~~g~lt~p~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv~~~f~~p~~~~~~~a~~~~~kf~~ 522 (674)
T KOG0922|consen 443 ELYSLGALDDRGKLTSPLGRQMAELPLEPHLSKMLLKSSELGCSEEILTIAAMLSVQSVFSRPKDKKAEDADRKRAKFAN 522 (674)
T ss_pred HHHhcCcccCcCCcCchHHhhhhhcCCCcchhhhhhhccccCCcchhhhheeeeeccceecCccchhhhhhhHHHHhhcC
Confidence 9999999999999998 9999999999999999999999999999999999999999999999999997 9999999999
Q ss_pred CCCCccccccccccc-----hhhHHHHhhhhccccchhhhhhh-ccccccCCCccccccc
Q psy3476 953 PLGKMLVFGSMFHQI-----DTMLLLDLALNFGAIDSKERVTS-LGRFLSDLPVDIPLGK 1006 (1417)
Q Consensus 953 ~~gd~lt~l~~~~~~-----~~~~c~~~~l~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~ 1006 (1417)
++|||+|++|+|++| +++||.+||+|+++|++|.+++. |.++++++++++.|++
T Consensus 523 ~eGDh~tlL~vy~~~~~~~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~~~~~~~~~s~~ 582 (674)
T KOG0922|consen 523 PEGDHLTLLNVYESWKENGTSKKWCKENFINARSLKRAKDIRKQLRRILDKFGLPVSSCG 582 (674)
T ss_pred cccCHHHHHHHHHHHHhcCChhhHHHHhcccHHHHHHHHHHHHHHHHHHHHcCCCccCCC
Confidence 999999999999999 59999999999999999999999 9999999999998887
|
|
| >KOG0924|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-54 Score=501.24 Aligned_cols=212 Identities=27% Similarity=0.465 Sum_probs=207.0
Q ss_pred hhhhHHHhhhccccccCCCcccccccHHHH-hhhhcCCccchhhcchHHHHHHHHHhcCCCcccCCCCCCCCccchHHHH
Q psy3476 795 EEEEEEEEGERLESRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 873 (1417)
Q Consensus 795 ~s~~~~~qR~~~agR~~pG~CyRLyt~~~~-~~l~~~~~PEI~r~~L~~~vL~lk~~g~~~~~~f~~l~~P~~~~l~~A~ 873 (1417)
||+.+|.||+||||||+||+||||||+.+| +.|.+.++|||||++|+++||.||++|++++.+|+|+||||.+.+.+|+
T Consensus 670 IS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslgV~dll~FdFmD~Pped~~~~sl 749 (1042)
T KOG0924|consen 670 ISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDDLLKFDFMDPPPEDNLLNSL 749 (1042)
T ss_pred chhccchhhccccCCCCCcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcChhhhhCCCcCCCCHHHHHHHHH
Confidence 899999999999999999999999999999 5899999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccccccchhhhhcccCCCCccccchhhhcccccchhhHHHHHHhhccccccchhhhcccccccCCCCccCC
Q psy3476 874 RSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVTSLGRFLSDLPVDIP 953 (1417)
Q Consensus 874 ~~L~~lgald~~~~lT~lG~~l~~lPvdp~lak~Ll~~~~~~cl~~~l~i~a~ls~~~~~~~~~~~~~~~~~~~~~f~~~ 953 (1417)
..|+.|||||+.|.||++|++|+.||+||.|+||||.|+.+||.+||++|++|||...+|.++++....++.++..|.++
T Consensus 750 y~Lw~LGAl~~~g~LT~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp~VF~rpker~eead~ar~Kf~~~ 829 (1042)
T KOG0924|consen 750 YQLWTLGALDNTGQLTPLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVPAVFYRPKEREEEADAAREKFQVP 829 (1042)
T ss_pred HHHHHhhccccCCccchhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhcccceeeccccchhhhhhHHhhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccccccc-----hhhHHHHhhhhccccchhhhhhh-ccccccCCCccccccc
Q psy3476 954 LGKMLVFGSMFHQI-----DTMLLLDLALNFGAIDSKERVTS-LGRFLSDLPVDIPLGK 1006 (1417)
Q Consensus 954 ~gd~lt~l~~~~~~-----~~~~c~~~~l~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~ 1006 (1417)
+||||||||||++| +..||++||||++||++|..++. |+.|++++++++.|+.
T Consensus 830 ~sDhLTlLNVf~qw~~~~~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~l~S~~ 888 (1042)
T KOG0924|consen 830 ESDHLTLLNVFNQWRKNKYSSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLPLISSD 888 (1042)
T ss_pred CCchhhHHHHHHHHHhcCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCcccCc
Confidence 99999999999999 59999999999999999999999 9999999888887765
|
|
| >KOG0925|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-51 Score=463.97 Aligned_cols=215 Identities=26% Similarity=0.414 Sum_probs=209.2
Q ss_pred hhhhHHHhhhccccccCCCcccccccHHHHh-hhhcCCccchhhcchHHHHHHHHHhcCCCcccCCCCCCCCccchHHHH
Q psy3476 795 EEEEEEEEGERLESRTGPGVCYRLYSEEQYS-LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 873 (1417)
Q Consensus 795 ~s~~~~~qR~~~agR~~pG~CyRLyt~~~~~-~l~~~~~PEI~r~~L~~~vL~lk~~g~~~~~~f~~l~~P~~~~l~~A~ 873 (1417)
|||.+|+||+|||||+.||+||||||++.|+ .|.+.+.|||+|++|+++||+||.+||.++.+|+|+|||.++++.+|+
T Consensus 360 ISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~~typeilrsNL~s~VL~LKklgI~dlvhfdfmDpPAPEtLMrAL 439 (699)
T KOG0925|consen 360 ISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQPQTYPEILRSNLSSTVLQLKKLGIDDLVHFDFMDPPAPETLMRAL 439 (699)
T ss_pred chHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCCCCcHHHHHHhhHHHHHHHHhcCcccccCCcCCCCCChHHHHHHH
Confidence 9999999999999999999999999999996 799999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccccccchhhhhcccCCCCccccchhhhcccccchhhHHHHHHhhccccccchhh-hcccccccCCCCccC
Q psy3476 874 RSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKER-VTSLGRFLSDLPVDI 952 (1417)
Q Consensus 874 ~~L~~lgald~~~~lT~lG~~l~~lPvdp~lak~Ll~~~~~~cl~~~l~i~a~ls~~~~~~~~~-~~~~~~~~~~~~f~~ 952 (1417)
+.|..|+|||++|+||++|..|+.||+||.++||||.+++|+|.+|+++|+||||..+.+.++. +.+..++.++..|.|
T Consensus 440 E~LnYLaaLdDdGnLT~lG~imSEFPLdPqLAkmLi~S~efnCsnEiLsisAMLsvPncFvRp~~~a~kaAdeak~~faH 519 (699)
T KOG0925|consen 440 EVLNYLAALDDDGNLTSLGEIMSEFPLDPQLAKMLIGSCEFNCSNEILSISAMLSVPNCFVRPTSSASKAADEAKETFAH 519 (699)
T ss_pred HHhhhhhhhCCCcccchhhhhhhcCCCChHHHHHHhhcCCCCchHHHHHHHhcccCCccccCCChhHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999998 666688899999999
Q ss_pred CCCCccccccccccc-----hhhHHHHhhhhccccchhhhhhh-ccccccCCCccccccccccccc
Q psy3476 953 PLGKMLVFGSMFHQI-----DTMLLLDLALNFGAIDSKERVTS-LGRFLSDLPVDIPLGKMLVFGS 1012 (1417)
Q Consensus 953 ~~gd~lt~l~~~~~~-----~~~~c~~~~l~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~ 1012 (1417)
++|||+||+|||++| +++||.+||||++||++|.-+|. |+|+|+|+.+++.+.. |||
T Consensus 520 ~dGDHlTLlnVYhAfkq~~~~~~WC~~~flN~ral~~Ad~vR~qL~rim~R~~L~~~st~---F~S 582 (699)
T KOG0925|consen 520 IDGDHLTLLNVYHAFKQNNEDPNWCYDNFLNYRALKSADNVRQQLLRIMDRFNLPLCSTD---FGS 582 (699)
T ss_pred CCcchHHHHHHHHHHHhcCCChhHHHHhcccHHHHHhHHHHHHHHHHHHHHhcCcccCCC---CCC
Confidence 999999999999999 59999999999999999999999 9999999999999999 663
|
|
| >KOG0923|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=465.58 Aligned_cols=212 Identities=24% Similarity=0.467 Sum_probs=204.3
Q ss_pred hhhhHHHhhhccccccCCCcccccccHHHHh-hhhcCCccchhhcchHHHHHHHHHhcCCCcccCCCCCCCCccchHHHH
Q psy3476 795 EEEEEEEEGERLESRTGPGVCYRLYSEEQYS-LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 873 (1417)
Q Consensus 795 ~s~~~~~qR~~~agR~~pG~CyRLyt~~~~~-~l~~~~~PEI~r~~L~~~vL~lk~~g~~~~~~f~~l~~P~~~~l~~A~ 873 (1417)
+|++.|.||+||||||+||+||||||...|. .+.+.++|||+|++|+++||.||++||+|+.+|||+||||.+++..|+
T Consensus 579 iSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSLGI~Dl~~FdFmDpPp~etL~~aL 658 (902)
T KOG0923|consen 579 ISKASANQRAGRAGRTGPGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSLGIHDLIHFDFLDPPPTETLLKAL 658 (902)
T ss_pred echhhhhhhccccCCCCCCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhcCcchhcccccCCCCChHHHHHHH
Confidence 8999999999999999999999999999996 688888999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccccccchhhhhcccCCCCccccchhhhcccccchhhHHHHHHhhcccc-ccchhhhcccccccCCCCccC
Q psy3476 874 RSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGA-IDSKERVTSLGRFLSDLPVDI 952 (1417)
Q Consensus 874 ~~L~~lgald~~~~lT~lG~~l~~lPvdp~lak~Ll~~~~~~cl~~~l~i~a~ls~~~-~~~~~~~~~~~~~~~~~~f~~ 952 (1417)
+.|+.|||||..|.||-+||+|+.||+||+++|||+.+.+++|.++|++||||||.+. ++.++.+++--+|-+...|.+
T Consensus 659 E~LyaLGALn~~GeLTk~GrrMaEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyrpk~~~v~ad~a~~~f~~ 738 (902)
T KOG0923|consen 659 EQLYALGALNHLGELTKLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRPKDKQVHADNARKNFEE 738 (902)
T ss_pred HHHHHhhccccccchhhhhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHHHhcCchheecchhhhhhhhhhhhccCC
Confidence 9999999999999999999999999999999999999999999999999999999766 799999999999999999999
Q ss_pred CCCCccccccccccc-----hhhHHHHhhhhccccchhhhhhh-ccccccCCCccccccc
Q psy3476 953 PLGKMLVFGSMFHQI-----DTMLLLDLALNFGAIDSKERVTS-LGRFLSDLPVDIPLGK 1006 (1417)
Q Consensus 953 ~~gd~lt~l~~~~~~-----~~~~c~~~~l~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~ 1006 (1417)
+.|||+++++||++| +.+||.+||+++++|.+|..+++ |..++.+.++...|+.
T Consensus 739 ~~gDhi~~L~vyn~w~es~~s~~wC~e~~iq~~sm~rardir~qL~gll~~v~~~~~s~~ 798 (902)
T KOG0923|consen 739 PVGDHIVLLNVYNQWKESKYSTQWCYENFIQYRSMKRARDIRDQLEGLLERVEIDLSSNQ 798 (902)
T ss_pred CCcchhhhhHHHHHHhhcchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhccccccCCh
Confidence 999999999999998 69999999999999999999999 9988888888888877
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=485.08 Aligned_cols=212 Identities=25% Similarity=0.425 Sum_probs=200.3
Q ss_pred hhhhhhHHHhhhccccccCCCcccccccHHHHhhhhcCCccchhhcchHHHHHHHHHhcCCCcccCCCCCCCCccchHHH
Q psy3476 793 EIEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 872 (1417)
Q Consensus 793 ~~~s~~~~~qR~~~agR~~pG~CyRLyt~~~~~~l~~~~~PEI~r~~L~~~vL~lk~~g~~~~~~f~~l~~P~~~~l~~A 872 (1417)
+-+|++.+.||+|||||++||+||||||+++|+.+++++.|||+|++|+++||+++++|++++..|+|+|||+..++..|
T Consensus 382 ~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~~~~~~~~PEIlR~~L~~viL~lk~lgl~di~~F~fldpP~~~~i~~a 461 (1294)
T PRK11131 382 EPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDG 461 (1294)
T ss_pred eecCHhhHhhhccccCCCCCcEEEEeCCHHHHHhhhcccCCccccCCHHHHHHHHHHcCCCCcceeeCCCCCCHHHHHHH
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccccc-----cccchhhhhcccCCCCccccchhhhcccccchhhHHHHHHhhccccccchhhhcccccccCC
Q psy3476 873 VRSLTQHGAIDSK-----ERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVTSLGRFLSD 947 (1417)
Q Consensus 873 ~~~L~~lgald~~-----~~lT~lG~~l~~lPvdp~lak~Ll~~~~~~cl~~~l~i~a~ls~~~~~~~~~~~~~~~~~~~ 947 (1417)
++.|+.+||||++ ++||++|+.|++||+||++||||+.|+.|||++++++|||+||+++++.++.+++..++.+|
T Consensus 462 l~~L~~LgAld~~~~~~~~~LT~lG~~la~LPldPrlakmLl~a~~~~c~~evl~IaA~Lsv~dpf~~p~~~~~~a~~~~ 541 (1294)
T PRK11131 462 VRLLEELGAITTDEQASAYKLTPLGRQLAQLPVDPRLARMVLEAQKHGCVREVMIITSALSIQDPRERPMDKQQASDEKH 541 (1294)
T ss_pred HHHHHHCCCCCccccCCCccCcHHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcccCCchhHHHHHHHH
Confidence 9999999999864 57999999999999999999999999999999999999999999999999989888999999
Q ss_pred CCccCCCCCccccccccccch-----------hhHHHHhhhhccccchhhhhhh-ccccccCCCccccc
Q psy3476 948 LPVDIPLGKMLVFGSMFHQID-----------TMLLLDLALNFGAIDSKERVTS-LGRFLSDLPVDIPL 1004 (1417)
Q Consensus 948 ~~f~~~~gd~lt~l~~~~~~~-----------~~~c~~~~l~~~~~~~~~~~~~-l~~~~~~~~~~~~~ 1004 (1417)
..|.+++|||+|++|+|+.|. ..||.+||||+.+|+++..++. |.++++++++++.+
T Consensus 542 ~~f~~~~sD~lt~ln~~~~~~~~~~~~s~~~~~~~C~~~~L~~~~l~e~~~i~~QL~~~~~~~g~~~~~ 610 (1294)
T PRK11131 542 RRFADKESDFLAFVNLWNYLQEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNS 610 (1294)
T ss_pred HhhCCCCCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999882 3699999999999999999999 88888877665543
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-44 Score=463.48 Aligned_cols=208 Identities=26% Similarity=0.455 Sum_probs=196.2
Q ss_pred hhhhhhHHHhhhccccccCCCcccccccHHHHhhhhcCCccchhhcchHHHHHHHHHhcCCCcccCCCCCCCCccchHHH
Q psy3476 793 EIEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 872 (1417)
Q Consensus 793 ~~~s~~~~~qR~~~agR~~pG~CyRLyt~~~~~~l~~~~~PEI~r~~L~~~vL~lk~~g~~~~~~f~~l~~P~~~~l~~A 872 (1417)
.-+|++.|.||+|||||++||+||||||+++|+.+++++.|||+|+||++++|++++||++++.+|+|+|||+..++..|
T Consensus 375 ~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~~~~~~~~PEIlR~~L~~viL~l~~lg~~di~~f~fldpP~~~~i~~A 454 (1283)
T TIGR01967 375 EPISQASANQRKGRCGRVAPGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMLALRLGDIAAFPFIEAPDPRAIRDG 454 (1283)
T ss_pred ccCCHHHHHHHhhhhCCCCCceEEEecCHHHHHhhhhccCcccccccHHHHHHHHHhcCCCCcccccCCCCCCHHHHHHH
Confidence 34899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcccccccc---ccchhhhhcccCCCCccccchhhhcccccchhhHHHHHHhhccccccchhhhcccccccCCCC
Q psy3476 873 VRSLTQHGAIDSKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVTSLGRFLSDLP 949 (1417)
Q Consensus 873 ~~~L~~lgald~~~---~lT~lG~~l~~lPvdp~lak~Ll~~~~~~cl~~~l~i~a~ls~~~~~~~~~~~~~~~~~~~~~ 949 (1417)
++.|..+||||++| +||++|+.|+.||+||++||||+.|..+||++++++|||+||.++++.++.+++..++.++..
T Consensus 455 ~~~L~~LGAld~~~~~~~LT~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~IaA~Ls~~dp~~~p~~~~~~a~~~~~~ 534 (1283)
T TIGR01967 455 FRLLEELGALDDDEAEPQLTPIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIASALSIQDPRERPMEKQQAADQAHAR 534 (1283)
T ss_pred HHHHHHCCCCCCCCCCccccHHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcCCCcchhHHHHHHHHHH
Confidence 99999999999998 799999999999999999999999999999999999999999999988888888899999999
Q ss_pred ccCCCCCccccccccccch-----------hhHHHHhhhhccccchhhhhhh-ccccccCCCc
Q psy3476 950 VDIPLGKMLVFGSMFHQID-----------TMLLLDLALNFGAIDSKERVTS-LGRFLSDLPV 1000 (1417)
Q Consensus 950 f~~~~gd~lt~l~~~~~~~-----------~~~c~~~~l~~~~~~~~~~~~~-l~~~~~~~~~ 1000 (1417)
|.+++|||++++|+|+.|. ..||.+||||+.+|+++.+++. |.++++++++
T Consensus 535 f~~~~sD~l~~L~~~~~~~~~~~~~~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~~~~~~~~~ 597 (1283)
T TIGR01967 535 FKDPRSDFLSRVNLWRHIEEQRQALSANQFRNACRKQYLNYLRVREWQDIYRQLTQVVKELGL 597 (1283)
T ss_pred hcCCCCCHHHHHHHHHHHHHhhhhccchHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999871 5899999999999999888888 7766655543
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=407.18 Aligned_cols=554 Identities=19% Similarity=0.155 Sum_probs=353.7
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC--CCcEEEecchHHHHHHHHHHHHHHHccccCCeEEEE
Q psy3476 38 LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG--FQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQ 115 (1417)
Q Consensus 38 lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~--~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy~ 115 (1417)
..++.+|.++++.+.++++++++||||||||+++.+++++.. ..++++..|+|..|.+.++.+.+ + ..+|..|++.
T Consensus 21 ~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~~~~-l-~~~g~~v~~~ 98 (674)
T PRK01172 21 FELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEELSR-L-RSLGMRVKIS 98 (674)
T ss_pred CCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHHHHH-H-hhcCCeEEEE
Confidence 346899999999999999999999999999999888877642 24677777999888888887764 2 2356666654
Q ss_pred Eeecccc---cCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhccccc
Q psy3476 116 IRFEKHR---REKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNA 192 (1417)
Q Consensus 116 ir~e~~~---~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 192 (1417)
+...... -....|+++|++.+...+..+
T Consensus 99 ~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~------------------------------------------------- 129 (674)
T PRK01172 99 IGDYDDPPDFIKRYDVVILTSEKADSLIHHD------------------------------------------------- 129 (674)
T ss_pred eCCCCCChhhhccCCEEEECHHHHHHHHhCC-------------------------------------------------
Confidence 4311110 123456666665433222111
Q ss_pred hhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCccccc
Q psy3476 193 YEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIVAA 272 (1417)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~~~~ 272 (1417)
T Consensus 130 -------------------------------------------------------------------------------- 129 (674)
T PRK01172 130 -------------------------------------------------------------------------------- 129 (674)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccc--cCcchHHHHHHHHhccCC
Q psy3476 273 DYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERH--LHGDFLLGVIKCLLHSTA 350 (1417)
Q Consensus 273 ~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~--l~~d~ll~llk~l~~~r~ 350 (1417)
...+.++++||+||+|... ..+..+..++..+...++
T Consensus 130 -----------------------------------------~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~~~ 168 (674)
T PRK01172 130 -----------------------------------------PYIINDVGLIVADEIHIIGDEDRGPTLETVLSSARYVNP 168 (674)
T ss_pred -----------------------------------------hhHHhhcCEEEEecchhccCCCccHHHHHHHHHHHhcCc
Confidence 0246789999999999432 122345556666666678
Q ss_pred CCcEEEEccCC-CHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEE
Q psy3476 351 EVKIILMSATI-NIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429 (1417)
Q Consensus 351 ~~qvIlmSATl-n~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iL 429 (1417)
+.|+|+||||+ |.+++++|+ +++.+....|+.|++................. ...+...+.+.. ..++++|
T Consensus 169 ~~riI~lSATl~n~~~la~wl--~~~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~----~~~~~~~i~~~~--~~~~~vL 240 (674)
T PRK01172 169 DARILALSATVSNANELAQWL--NASLIKSNFRPVPLKLGILYRKRLILDGYERS----QVDINSLIKETV--NDGGQVL 240 (674)
T ss_pred CCcEEEEeCccCCHHHHHHHh--CCCccCCCCCCCCeEEEEEecCeeeecccccc----cccHHHHHHHHH--hCCCcEE
Confidence 89999999999 899999999 35667777888887753321110000000000 011223333322 3468999
Q ss_pred EEeCCHHHHHHHHHHHHhhhhccC--------------------CcEEEEecCCCCHHHHHHHhccCCCCCceEEEecch
Q psy3476 430 IFMSGISEISSIVRAAQEYNEKSQ--------------------GWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489 (1417)
Q Consensus 430 VFl~~~~eie~la~~L~~~~~~~~--------------------~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnI 489 (1417)
|||+++++++.++..|.+...... ...+..+||+|++++|..+++.|++|.++|||||++
T Consensus 241 VF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~ 320 (674)
T PRK01172 241 VFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPT 320 (674)
T ss_pred EEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecch
Confidence 999999999999999876432111 124788999999999999999999999999999999
Q ss_pred hhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEec-CHHHHHHhhcc--C
Q psy3476 490 AETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLY-SEEQYSLLAEY--S 563 (1417)
Q Consensus 490 ae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~-t~~~~~~l~~~--~ 563 (1417)
+++|||+|+..+||+. ...|+. ....++|.+++.||+|||||.| .|.++.+. ++++++.+.++ .
T Consensus 321 la~Gvnipa~~VII~~----~~~~~~------~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~ 390 (674)
T PRK01172 321 LAAGVNLPARLVIVRD----ITRYGN------GGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSG 390 (674)
T ss_pred hhccCCCcceEEEEcC----ceEeCC------CCceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHcC
Confidence 9999999999888861 122332 2235789999999999999998 57777664 33334333332 2
Q ss_pred CCccccc------ChHHHHHHHHhhCC----CCCcCC-----CCCCCCC---cchhHHHHHHHHhcCCCCCCC--CcChh
Q psy3476 564 TPEIRRV------SIDSLLLSLVCMGL----GDVRKF-----PFLEAPP---AENIESSVRSLTQHGAIDSKE--RVTSL 623 (1417)
Q Consensus 564 ~pEI~r~------~L~~~lL~lk~lgi----~~~~~f-----~~l~pP~---~~~l~~Al~~L~~lGaId~~~--~lT~L 623 (1417)
.|+.... .+...+|..++.|. .++..| .+..+++ .+.++++++.|.+.|+|+.++ .+|++
T Consensus 391 ~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~t~l 470 (674)
T PRK01172 391 EPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQNGVDEIDYYIESSLKFLKENGFIKGDVTLRATRL 470 (674)
T ss_pred CCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcCchHHHHHHHHHHHHHHHHCCCcccCCcEeECHH
Confidence 2332222 22333556666664 222222 2334332 457899999999999998654 58999
Q ss_pred hhhccCCCCChhhHHHHHhhhccCChhhHHHHhhhccCCCccccCCCCChhHHHHHhh---cccCC--CChHHHHHHHHH
Q psy3476 624 GRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKE---LESNH--GDPLTVLNAYKE 698 (1417)
Q Consensus 624 G~~ls~lpldp~lak~Ll~~~~f~cle~vl~IaA~Lsv~~~F~~~~~~~~~~~~~r~~---f~~~~--sD~ltlln~f~~ 698 (1417)
|++++.+|++|..++.+..+..-.. ....+..+++....|. |...+++ +..++. ..... ..++...-+.++
T Consensus 471 G~~~s~~~l~~~t~~~~~~~l~~~~--~~~~~l~~~~~~~e~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~k~~~ll~~ 546 (674)
T PRK01172 471 GKLTSDLYIDPESALILKSAFDHDY--DEDLALYYISLCREII-PANTRDD-YYAMEFLEDIGVIDGDISAAKTAMVLRG 546 (674)
T ss_pred HHHHHHhCCCHHHHHHHHHHhhccC--CHHHHHHHhhcCcccc-ccccchH-HHHHHHHHHhccccchhHHHHHHHHHHH
Confidence 9999999999999999987764332 2234566666677773 3222222 111111 11111 122333345677
Q ss_pred HHHhhhhhchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCCChhHHHHHHhcCchHHHHHHHhhhccc
Q psy3476 699 WLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEE 778 (1417)
Q Consensus 699 w~~~~~~~~~~~~WC~~~~L~~~~L~ei~~lr~QL~~iL~~~gl~~~~~~~~~~~~s~~ral~~G~~~~L~~l~~~~~~~ 778 (1417)
|.+.. ....-++.+++..+.++.+..--..+...+..+.=.-. ..-..-.+.+.+++..|-...+..|.+ .+ .
T Consensus 547 ~~~~~----~~~~i~~~~~~~~g~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~l~~~~~rl~~gv~~~~~~L~~-ip-~ 619 (674)
T PRK01172 547 WISEA----SMQKITDTYGIAPGDVQARASSADWISYSLARLSSIYK-PEMRRKLEILNIRIKEGIREDLIDLVL-IP-K 619 (674)
T ss_pred HHcCC----CHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHHHcCCCHHHHhhcC-CC-C
Confidence 86532 23345778899988888886555555432222100000 000112445667799999888888873 43 5
Q ss_pred cccccccccccccc
Q psy3476 779 APKRRKMLKADNAY 792 (1417)
Q Consensus 779 ~~r~rk~l~~~~~~ 792 (1417)
.+|.|.+.-.+.+.
T Consensus 620 ~~~~~a~~l~~~g~ 633 (674)
T PRK01172 620 VGRVRARRLYDAGF 633 (674)
T ss_pred CCHHHHHHHHHcCC
Confidence 66777776666644
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-37 Score=394.84 Aligned_cols=450 Identities=18% Similarity=0.206 Sum_probs=286.4
Q ss_pred cCCCCccEEEEecCcccccCc---chHHHHHHHHhccCCCCcEEEEccCC-CHHHHHHHhccCceEEEeCCcccceeEEe
Q psy3476 315 NFLSSYDVLVLDEIHERHLHG---DFLLGVIKCLLHSTAEVKIILMSATI-NIELFHTYFNRIAKIIKVPGRLYPIQLEY 390 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~---d~ll~llk~l~~~r~~~qvIlmSATl-n~~~~~~~f~~~~~vi~v~gr~~pv~v~~ 390 (1417)
.+++++++||+||+| ...+. ..+..++.++....++.|+|+||||+ |.+.+++|++ +..+....|+.|+....
T Consensus 133 ~~l~~v~lvViDE~H-~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~--~~~~~~~~rpv~l~~~v 209 (737)
T PRK02362 133 PWLDDITCVVVDEVH-LIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNADELADWLD--AELVDSEWRPIDLREGV 209 (737)
T ss_pred hhhhhcCEEEEECcc-ccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhC--CCcccCCCCCCCCeeeE
Confidence 457789999999999 33333 33455566666667889999999999 7899999993 44555566766665432
Q ss_pred ccccccccc-cccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhc------------------
Q psy3476 391 HPIVELDRT-KSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEK------------------ 451 (1417)
Q Consensus 391 ~~~~~~~~~-~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~------------------ 451 (1417)
......... ....+........+..+.+.+ ..++++||||+++++++.+++.|......
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~ 287 (737)
T PRK02362 210 FYGGAIHFDDSQREVEVPSKDDTLNLVLDTL--EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIR 287 (737)
T ss_pred ecCCeeccccccccCCCccchHHHHHHHHHH--HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH
Confidence 111110000 001111101122333333332 24689999999999999999988653210
Q ss_pred -------------cCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCC
Q psy3476 452 -------------SQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAK 518 (1417)
Q Consensus 452 -------------~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~ 518 (1417)
.-...+..+||+|++++|..+++.|++|.++|||||+++++|||+|++++||++ ...||...+
T Consensus 288 ~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~----~~~yd~~~g 363 (737)
T PRK02362 288 EVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRD----YRRYDGGAG 363 (737)
T ss_pred hccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEec----ceeecCCCC
Confidence 001368899999999999999999999999999999999999999999999973 345775432
Q ss_pred ccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHH-HHH-HhhccC--CCcccc------cChHHHHHHHHhhCCC
Q psy3476 519 MSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEE-QYS-LLAEYS--TPEIRR------VSIDSLLLSLVCMGLG 585 (1417)
Q Consensus 519 ~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~-~~~-~l~~~~--~pEI~r------~~L~~~lL~lk~lgi~ 585 (1417)
..|+|.++|.||+|||||.| .|.|+.+.... +.. .+..+. .|+... ..+...++..++.|..
T Consensus 364 -----~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~~~~~i~S~l~~~~~l~~~lla~I~~~~~ 438 (737)
T PRK02362 364 -----MQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIWADPEDVRSKLATEPALRTHVLSTIASGFA 438 (737)
T ss_pred -----ceeCCHHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHhCCCCceeecCCChhhHHHHHHHHHHhCcc
Confidence 24789999999999999998 39999988653 222 122221 233222 2466778888877632
Q ss_pred C----CcCC---CCCCCCC------cchhHHHHHHHHhcCCCCCCCC---cChhhhhccCCCCChhhHHHHHhhhccCCh
Q psy3476 586 D----VRKF---PFLEAPP------AENIESSVRSLTQHGAIDSKER---VTSLGRFLSDLPVDIPLGKMLVFGSMFHQI 649 (1417)
Q Consensus 586 ~----~~~f---~~l~pP~------~~~l~~Al~~L~~lGaId~~~~---lT~LG~~ls~lpldp~lak~Ll~~~~f~cl 649 (1417)
. +..| .|...+. .+.++.+++.|.+.|+|+.++. +|++|++++.++++|..+..+..+.....-
T Consensus 439 ~~~~d~~~~l~~Tf~~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~~~~~ 518 (737)
T PRK02362 439 RTRDGLLEFLEATFYATQTDDTGRLERVVDDVLDFLERNGMIEEDGETLEATELGHLVSRLYIDPLSAAEIIDGLEAAKK 518 (737)
T ss_pred CCHHHHHHHHHhChHHhhccchHHHHHHHHHHHHHHHHCCCeeecCCeEeEChHHHHHHHhcCCHHHHHHHHHHhhhccc
Confidence 1 1111 2322222 2358999999999999987654 899999999999999999999877543221
Q ss_pred hhHHHHhhhccCCCccccCCCCChhHHHHHhhcc--------c-----CCCChH------HHHHHHHHHHHhhhhhchHH
Q psy3476 650 DTVLSLAAVLSVQSPFTNRAFRDPDCETARKELE--------S-----NHGDPL------TVLNAYKEWLGVKKDRVRSK 710 (1417)
Q Consensus 650 e~vl~IaA~Lsv~~~F~~~~~~~~~~~~~r~~f~--------~-----~~sD~l------tlln~f~~w~~~~~~~~~~~ 710 (1417)
.....+.-+++....|.....+..+.+..++... . ...++- -..-+.++|.+. ....
T Consensus 519 ~~~~~~l~~i~~~~e~~~~~~r~~e~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~k~~~ll~~~i~~----~~~~ 594 (737)
T PRK02362 519 PTDLGLLHLVCSTPDMYELYLRSGDYEWLNEYLYEHEDELLGDVPSEFEDDEFEDFLSAVKTALLLEDWIDE----VDEE 594 (737)
T ss_pred CchHHHHHHhhcCccccccccChhHHHHHHHHHHhcccchhccCCchhhhhhHHHHHHHHHHHHHHHHHHhC----CCHH
Confidence 1234555566667777665554444333322110 0 111111 112235566542 2334
Q ss_pred HHHHHcCCCHHHHHHHHHHHHHH----HHHHHHCCCCcCCCCCCCChhHHHHHHhcCchHHHHHHHhhhccccccccccc
Q psy3476 711 KWCKRRGIEEQRFYEVTKLRSQF----KQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKML 786 (1417)
Q Consensus 711 ~WC~~~~L~~~~L~ei~~lr~QL----~~iL~~~gl~~~~~~~~~~~~s~~ral~~G~~~~L~~l~~~~~~~~~r~rk~l 786 (1417)
.-++++++..+.++.+.+.-..| .+++...++ ........+.+.+.+|-...+..|. +.. ..|++|.+.
T Consensus 595 ~i~~~~~~~~gdl~~~~~~~~~l~~a~~~i~~~~~~-----~~~~~~~~l~~~l~~gv~~~~~~L~-~ip-~i~~~~a~~ 667 (737)
T PRK02362 595 RITERYGVGPGDIRGKVETAEWLLHAAERLASELDL-----DLARAARELEKRVEYGVREELLDLV-GLR-GVGRVRARR 667 (737)
T ss_pred HHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHHhCc-----cHHHHHHHHHHHHHhCCCHHHHHHh-CCC-CCCHHHHHH
Confidence 56778889877776665544444 444444332 0112244567788888888888886 333 455555544
Q ss_pred ccc
Q psy3476 787 KAD 789 (1417)
Q Consensus 787 ~~~ 789 (1417)
-.+
T Consensus 668 l~~ 670 (737)
T PRK02362 668 LYN 670 (737)
T ss_pred HHH
Confidence 433
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-35 Score=377.25 Aligned_cols=448 Identities=18% Similarity=0.142 Sum_probs=275.2
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCC-CHHHHHHHhccCceEEEeCCcccceeE--Eec
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATI-NIELFHTYFNRIAKIIKVPGRLYPIQL--EYH 391 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATl-n~~~~~~~f~~~~~vi~v~gr~~pv~v--~~~ 391 (1417)
.+++++++||+||+| ...+.+....+...+.+...+.|+|+||||+ |.+.+++|++ +..+....|+.|+.. .+.
T Consensus 134 ~~l~~l~lvViDE~H-~l~~~~rg~~le~il~~l~~~~qiI~lSATl~n~~~la~wl~--~~~~~~~~rpv~l~~~~~~~ 210 (720)
T PRK00254 134 SWIKDVKLVVADEIH-LIGSYDRGATLEMILTHMLGRAQILGLSATVGNAEELAEWLN--AELVVSDWRPVKLRKGVFYQ 210 (720)
T ss_pred hhhhcCCEEEEcCcC-ccCCccchHHHHHHHHhcCcCCcEEEEEccCCCHHHHHHHhC--CccccCCCCCCcceeeEecC
Confidence 356789999999999 3333344444444455556788999999999 8999999994 444555666666532 221
Q ss_pred cccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhh---------------------
Q psy3476 392 PIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNE--------------------- 450 (1417)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~--------------------- 450 (1417)
............. .......+.+.+ ..++++||||++++.++.++..+.....
T Consensus 211 ~~~~~~~~~~~~~----~~~~~~~~~~~i--~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (720)
T PRK00254 211 GFLFWEDGKIERF----PNSWESLVYDAV--KKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEEN 284 (720)
T ss_pred CeeeccCcchhcc----hHHHHHHHHHHH--HhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcC
Confidence 1110000000000 011222222322 2367899999999999988877643210
Q ss_pred -------ccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccc
Q psy3476 451 -------KSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQ 523 (1417)
Q Consensus 451 -------~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~ 523 (1417)
..-...+.++||+|++++|..+++.|++|.++|||||+++++|||+|++++||... ..|+. +.
T Consensus 285 ~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnipa~~vVI~~~----~~~~~------~~ 354 (720)
T PRK00254 285 PTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVITATPTLSAGINLPAFRVIIRDT----KRYSN------FG 354 (720)
T ss_pred CCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCCceEEEECCc----eEcCC------CC
Confidence 00123589999999999999999999999999999999999999999999999733 23431 12
Q ss_pred eeecCHhhHHhhcCcCCCCC---CCeEEEecCHHHH-HHhhcc--CCCccc------ccChHHHHHHHHhhCC-CCCc--
Q psy3476 524 EFWISKASAEQRKGRAGRTG---PGVCYRLYSEEQY-SLLAEY--STPEIR------RVSIDSLLLSLVCMGL-GDVR-- 588 (1417)
Q Consensus 524 ~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~~~-~~l~~~--~~pEI~------r~~L~~~lL~lk~lgi-~~~~-- 588 (1417)
..+++.+++.||+|||||.| .|.++.+.+.++. +.+..+ ..||.. ...+...++..++.+. .+..
T Consensus 355 ~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~~~~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~ 434 (720)
T PRK00254 355 WEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMERYIFGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKEL 434 (720)
T ss_pred ceeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHHHHhCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHH
Confidence 23566789999999999987 5999988764431 112222 122211 1245566777766653 2221
Q ss_pred ------CCCCCCCCCc----chhHHHHHHHHhcCCCCCCC----CcChhhhhccCCCCChhhHHHHHhhhcc-CChhhHH
Q psy3476 589 ------KFPFLEAPPA----ENIESSVRSLTQHGAIDSKE----RVTSLGRFLSDLPVDIPLGKMLVFGSMF-HQIDTVL 653 (1417)
Q Consensus 589 ------~f~~l~pP~~----~~l~~Al~~L~~lGaId~~~----~lT~LG~~ls~lpldp~lak~Ll~~~~f-~cle~vl 653 (1417)
+|.+...|+. +.+++++..|.+.|+|+.++ .+|++|++++.++++|..++++..+..- .--....
T Consensus 435 ~~~l~~Tf~~~~~~~~~~~~~~v~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~s~~~i~~~t~~~~~~~l~~~~~~~~~~ 514 (720)
T PRK00254 435 VNFLERTFYAHQRKDLYSLEEKAKEIVYFLLENEFIDIDLEDRFIPLPLGIRTSQLYIDPLTAKKFKDAFPKIEKNPNPL 514 (720)
T ss_pred HHHHHhCHHHHhhcChHhHHHHHHHHHHHHHHCCCeEEcCCCCEeeChHHHHHHHHhCCHHHHHHHHHHHHhhccCCCHH
Confidence 3333333442 46788899999999997542 4799999999999999999998776532 1012345
Q ss_pred HHhhhccCCCccccCCCCChhHHHHHhhccc-------C-----CCChHH------HHHHHHHHHHhhhhhchHHHHHHH
Q psy3476 654 SLAAVLSVQSPFTNRAFRDPDCETARKELES-------N-----HGDPLT------VLNAYKEWLGVKKDRVRSKKWCKR 715 (1417)
Q Consensus 654 ~IaA~Lsv~~~F~~~~~~~~~~~~~r~~f~~-------~-----~sD~lt------lln~f~~w~~~~~~~~~~~~WC~~ 715 (1417)
.|..+++..+.|.....++.+....+..... . ..|.-+ ..-+.++|.+.. ....-+++
T Consensus 515 ~~l~~~~~~~e~~~~~~r~~e~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~----~~~~~~~~ 590 (720)
T PRK00254 515 GIFQLIASTPDMTPLNYSRKEMEDLLDEAYEMEDRLYFNIPYWEDYKFQKFLRAFKTAKVLLDWINEV----PEGEIVET 590 (720)
T ss_pred HHHHHhhCCccccccCcchhhHHHHHHHHHhhcccccccCCcchhhHHHHHHHHHHHHHHHHHHHcCC----CHHHHHHH
Confidence 6777778888887655555443333311110 0 012212 122345665321 22334667
Q ss_pred cCCCHHHHHHHHHHHHHHHHHH----HHCCCCcCCCCCCCChhHHHHHHhcCchHHHHHHHhhhccccccccccccccc
Q psy3476 716 RGIEEQRFYEVTKLRSQFKQVL----GDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADN 790 (1417)
Q Consensus 716 ~~L~~~~L~ei~~lr~QL~~iL----~~~gl~~~~~~~~~~~~s~~ral~~G~~~~L~~l~~~~~~~~~r~rk~l~~~~ 790 (1417)
+++..+.++.+.+.-..|...+ ...|... +--..+..+..++..|-...+..|.+ .. ..|++|+...++.
T Consensus 591 ~~~~~gd~~~~~~~~~~l~~a~~~i~~~~~~~~---~~~~~l~~l~~rl~~g~~~~~~~L~~-ip-gig~~~~~~l~~~ 664 (720)
T PRK00254 591 YNIDPGDLYRILELADWLMYSLIELYKLFEPKQ---EVLDYLETLHLRVKHGVREELLELMR-LP-MIGRKRARALYNA 664 (720)
T ss_pred hCCChHHHHHHHHHHHHHHHHHHHHHHHhCcch---hHHHHHHHHHHHHHcCCCHHHhhhhc-CC-CCCHHHHHHHHHc
Confidence 7888888877766655555544 4333210 00011334566778888777777762 33 4555555554444
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=390.07 Aligned_cols=209 Identities=27% Similarity=0.398 Sum_probs=183.5
Q ss_pred hhhhhHHHhhhccccccCCCcccccccHHHHhhhhcCCccchhhcchHHHHHHHHHhcCC-CcccCCCCCCCCccchHHH
Q psy3476 794 IEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLG-DVRKFPFLEAPPAENIESS 872 (1417)
Q Consensus 794 ~~s~~~~~qR~~~agR~~pG~CyRLyt~~~~~~l~~~~~PEI~r~~L~~~vL~lk~~g~~-~~~~f~~l~~P~~~~l~~A 872 (1417)
-+||+.|.||+|||||++||+||||||+++|+.|++++.|||+|+||++++|+|++||++ |+..|+|+|||+..++..|
T Consensus 359 ~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~~~~~~t~PEIlrtdLs~~vL~l~~~G~~~d~~~f~fld~P~~~~i~~A 438 (845)
T COG1643 359 PISKASADQRAGRAGRTGPGICYRLYSEEDFLAFPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPFPFLDPPPEAAIQAA 438 (845)
T ss_pred EechhhhhhhccccccCCCceEEEecCHHHHHhcccCCChhhhhcchHHHHHHHHhcCCCCCcccCccCCCCChHHHHHH
Confidence 499999999999999999999999999999999999999999999999999999999996 9999999999999999999
Q ss_pred HHHHhhccccccccccchhhhhcccCCCCccccchhhhcccccchhhHHHHHHhhcccc---ccchhhhccc---ccccC
Q psy3476 873 VRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGA---IDSKERVTSL---GRFLS 946 (1417)
Q Consensus 873 ~~~L~~lgald~~~~lT~lG~~l~~lPvdp~lak~Ll~~~~~~cl~~~l~i~a~ls~~~---~~~~~~~~~~---~~~~~ 946 (1417)
++.|+.+||||++|.||++|+.|+.||+||++|+||+.|..+||++++++|||+||.++ .+........ .++..
T Consensus 439 ~~~L~~LGAld~~g~LT~lG~~ms~lpldprLA~mLl~a~~~g~~~e~~~Ias~Ls~~~~~s~~~~~~~~~~~~~~~~~~ 518 (845)
T COG1643 439 LTLLQELGALDDSGKLTPLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATIASMLSEQDRESDFSRDVKLRKQRTAQDLL 518 (845)
T ss_pred HHHHHHcCCcCCCCCCCHHHHHHHhCCCChHHHHHHHhccccCcHHHHHHHHHhhccCCCcchhccccchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998 1222222211 22222
Q ss_pred -CCCccC---CCCCccccccccccc-----------hhhHHHHhhhhccccchhhhhhh-ccccccC-CCccc
Q psy3476 947 -DLPVDI---PLGKMLVFGSMFHQI-----------DTMLLLDLALNFGAIDSKERVTS-LGRFLSD-LPVDI 1002 (1417)
Q Consensus 947 -~~~f~~---~~gd~lt~l~~~~~~-----------~~~~c~~~~l~~~~~~~~~~~~~-l~~~~~~-~~~~~ 1002 (1417)
...+.. +.|||++++++|..| ...||..++++..+|.++.|+.. ++..+.+ .+..+
T Consensus 519 ~~l~~~~~~~~~~d~~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~l~~~~~~~~~~~ 591 (845)
T COG1643 519 KRLKRRNAADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTKALSRAPWIIAALLVQTSALAGRIL 591 (845)
T ss_pred HHHHhccCCCcchHHHHHHHHHHHHHHhhhccchhhHhcChhhhcCChhHHHhhHHHHHHHHHhhhccccchh
Confidence 244444 899999999999977 47899999999999999999988 6655544 44433
|
|
| >KOG0330|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=325.82 Aligned_cols=310 Identities=21% Similarity=0.247 Sum_probs=238.4
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC-----CcEEEecchHHHHHHHHHHHHHHHccccCCeEEEEE
Q psy3476 42 QYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF-----QRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQI 116 (1417)
Q Consensus 42 ~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~-----~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy~i 116 (1417)
..|.+.+.....++.+|..|+||||||..+..+|++.-+ ...+|..|+|..|.|+++.. +.++...|-.|-.-+
T Consensus 86 ~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~f-e~Lg~~iglr~~~lv 164 (476)
T KOG0330|consen 86 KIQSEAIPVALGGRDVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQF-EALGSGIGLRVAVLV 164 (476)
T ss_pred hhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHH-HHhccccCeEEEEEe
Confidence 668889999999999999999999999887777766433 36889999999999998754 444555555544444
Q ss_pred eeccc------ccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhccc
Q psy3476 117 RFEKH------RREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKAD 190 (1417)
Q Consensus 117 r~e~~------~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 190 (1417)
.+..+ .+.+..|+++|+|.|.+++.+.
T Consensus 165 GG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~T----------------------------------------------- 197 (476)
T KOG0330|consen 165 GGMDMMLQANQLSKKPHILVATPGRLWDHLENT----------------------------------------------- 197 (476)
T ss_pred cCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhc-----------------------------------------------
Confidence 44333 2457889999999999877532
Q ss_pred cchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCccc
Q psy3476 191 NAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIV 270 (1417)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~~ 270 (1417)
T Consensus 198 -------------------------------------------------------------------------------- 197 (476)
T KOG0330|consen 198 -------------------------------------------------------------------------------- 197 (476)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhccCC
Q psy3476 271 AADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTA 350 (1417)
Q Consensus 271 ~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~ 350 (1417)
....+.+++++|+|||| |.++.||...+-+++...+.
T Consensus 198 ------------------------------------------kgf~le~lk~LVlDEAD-rlLd~dF~~~ld~ILk~ip~ 234 (476)
T KOG0330|consen 198 ------------------------------------------KGFSLEQLKFLVLDEAD-RLLDMDFEEELDYILKVIPR 234 (476)
T ss_pred ------------------------------------------cCccHHHhHHHhhchHH-hhhhhhhHHHHHHHHHhcCc
Confidence 00236678899999999 99999999999999999999
Q ss_pred CCcEEEEccCCC--HHHHHHHhccCceEEEeCCcc--cc-eeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCC
Q psy3476 351 EVKIILMSATIN--IELFHTYFNRIAKIIKVPGRL--YP-IQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTER 425 (1417)
Q Consensus 351 ~~qvIlmSATln--~~~~~~~f~~~~~vi~v~gr~--~p-v~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~ 425 (1417)
..|.+++|||++ +.++..---.++..+.++... .+ +..+|...+.... ...++.++.+ ..+
T Consensus 235 erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K----------~~yLV~ll~e----~~g 300 (476)
T KOG0330|consen 235 ERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDK----------DTYLVYLLNE----LAG 300 (476)
T ss_pred cceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEecccccc----------chhHHHHHHh----hcC
Confidence 999999999994 445543222344444443321 11 1122222211111 1122333332 336
Q ss_pred CcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcC
Q psy3476 426 GDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDS 505 (1417)
Q Consensus 426 g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIds 505 (1417)
+++||||++...+..++-.|+. .++...+|||.|+++.|...++.|++|.+.|+||||+|+||+|||.|++|||
T Consensus 301 ~s~iVF~~t~~tt~~la~~L~~-----lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN- 374 (476)
T KOG0330|consen 301 NSVIVFCNTCNTTRFLALLLRN-----LGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVN- 374 (476)
T ss_pred CcEEEEEeccchHHHHHHHHHh-----cCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEe-
Confidence 8999999999999999999988 7899999999999999999999999999999999999999999999999999
Q ss_pred CcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHHh
Q psy3476 506 GKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLL 559 (1417)
Q Consensus 506 G~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~l 559 (1417)
||.|....+|+ ||+||+||.| +|+++.|++..+.+.+
T Consensus 375 -------yDiP~~skDYI----------HRvGRtaRaGrsG~~ItlVtqyDve~~ 412 (476)
T KOG0330|consen 375 -------YDIPTHSKDYI----------HRVGRTARAGRSGKAITLVTQYDVELV 412 (476)
T ss_pred -------cCCCCcHHHHH----------HHcccccccCCCcceEEEEehhhhHHH
Confidence 99999888887 9999999999 8999999999776543
|
|
| >KOG0926|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=357.97 Aligned_cols=204 Identities=25% Similarity=0.355 Sum_probs=179.8
Q ss_pred hhhhhhHHHhhhccccccCCCcccccccHHHHh-hhhcCCccchhhcchHHHHHHHHHhcCCCcccCCCCCCCCccchHH
Q psy3476 793 EIEEEEEEEEGERLESRTGPGVCYRLYSEEQYS-LLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 871 (1417)
Q Consensus 793 ~~~s~~~~~qR~~~agR~~pG~CyRLyt~~~~~-~l~~~~~PEI~r~~L~~~vL~lk~~g~~~~~~f~~l~~P~~~~l~~ 871 (1417)
+-+|+..|.||+|||||++||+||||||...|+ .+.+++.|||++.+.++++|+||+|+|.++.+|||.+||...++.+
T Consensus 675 ~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~~~Fe~fS~PEIlk~Pve~lvLqMKsMnI~kVvnFPFPtpPd~~~L~~ 754 (1172)
T KOG0926|consen 675 DWISKASADQRAGRAGRTGPGHCYRLYSSAVFSNDFEEFSLPEILKKPVESLVLQMKSMNIDKVVNFPFPTPPDRSALEK 754 (1172)
T ss_pred EeeeccccchhccccCCCCCCceeehhhhHHhhcchhhhccHHHhhCcHHHHHHHHHhcCccceecCCCCCCccHHHHHH
Confidence 348999999999999999999999999999997 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccccccccccchhhhhcccCCCCccccchhhhcccccchhhHHHHHHhhccccccchh--------------h
Q psy3476 872 SVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKE--------------R 937 (1417)
Q Consensus 872 A~~~L~~lgald~~~~lT~lG~~l~~lPvdp~lak~Ll~~~~~~cl~~~l~i~a~ls~~~~~~~~--------------~ 937 (1417)
|.+.|..|||||.+|.||.+|+.|+.||+.|+++|||+.+.+++|+.-...++++||.+.++-.. .
T Consensus 755 Aer~L~~LgALd~~g~lT~lGk~mS~FPlsPrfsKmL~~~~Q~~~lpy~i~lvsaLsv~e~~i~~~~ll~n~~~r~~~~e 834 (1172)
T KOG0926|consen 755 AERRLKALGALDSNGGLTKLGKAMSLFPLSPRFSKMLATSDQHNLLPYNIALVSALSVYEVLIVAASLLPNPLIREFEPE 834 (1172)
T ss_pred HHHHHHHhccccccCCcccccchhcccccChhHHHHHHHHHhhcchhHHHHHHHHHhccchhhhhhhcccccccccCCcc
Confidence 99999999999999999999999999999999999999999999999999999999987742111 1
Q ss_pred hcccc------------------cccCCCCccCCCCCccccccccccc-----hhhHHHHhhhhccccchhhhhhh-ccc
Q psy3476 938 VTSLG------------------RFLSDLPVDIPLGKMLVFGSMFHQI-----DTMLLLDLALNFGAIDSKERVTS-LGR 993 (1417)
Q Consensus 938 ~~~~~------------------~~~~~~~f~~~~gd~lt~l~~~~~~-----~~~~c~~~~l~~~~~~~~~~~~~-l~~ 993 (1417)
++..- .....-.|...++|.|+++.+-.++ ...+|..|+|-.++|.++..++. |.+
T Consensus 835 E~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~~l~sd~l~Ll~Av~a~ey~~~~~rfc~~ngLr~Kam~Ev~KLR~QL~~ 914 (1172)
T KOG0926|consen 835 EKDLIKDDETVEDKELKKRRREKSKAARSRFSNLDSDALVLLSAVSAAEYAENGMRFCEANGLRLKAMEEVRKLRKQLTN 914 (1172)
T ss_pred hhhccccccccccHHHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhhhcchhHHhcchHHHHHHHHHHHHHHHHH
Confidence 10100 1113457888899999999987665 57799999999999999988888 765
Q ss_pred ccc
Q psy3476 994 FLS 996 (1417)
Q Consensus 994 ~~~ 996 (1417)
+++
T Consensus 915 lv~ 917 (1172)
T KOG0926|consen 915 LVN 917 (1172)
T ss_pred HHH
Confidence 544
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-33 Score=343.41 Aligned_cols=205 Identities=23% Similarity=0.339 Sum_probs=158.8
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCC--HHHHHHHhccCceEEEeCCcc--cceeEEec
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATIN--IELFHTYFNRIAKIIKVPGRL--YPIQLEYH 391 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln--~~~~~~~f~~~~~vi~v~gr~--~pv~v~~~ 391 (1417)
.++++++||+|||| ++++.+|...+...+...++..|+++||||++ ...+...+..++..+.+.... ..++.+|.
T Consensus 144 ~l~~l~~lViDEad-~~l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~ 222 (460)
T PRK11776 144 DLDALNTLVLDEAD-RMLDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFY 222 (460)
T ss_pred cHHHCCEEEEECHH-HHhCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEE
Confidence 36678999999999 77788888888888878888899999999995 345565554555555444321 11222222
Q ss_pred cccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHH
Q psy3476 392 PIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDR 471 (1417)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~ 471 (1417)
..... .....+...+....++++||||+++++++.+++.|.+ .++.+..+||+|++.+|+.
T Consensus 223 ~~~~~--------------~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~-----~~~~v~~~hg~~~~~eR~~ 283 (460)
T PRK11776 223 EVSPD--------------ERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNA-----QGFSALALHGDLEQRDRDQ 283 (460)
T ss_pred EeCcH--------------HHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHh-----CCCcEEEEeCCCCHHHHHH
Confidence 11110 1122222222223467899999999999999999987 5788999999999999999
Q ss_pred HhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEe
Q psy3476 472 VFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRL 550 (1417)
Q Consensus 472 v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L 550 (1417)
+++.|++|..+|||||+++++|||||++++||+ ||.|.....|+ ||+|||||.| .|.||.+
T Consensus 284 ~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~--------~d~p~~~~~yi----------qR~GRtGR~g~~G~ai~l 345 (460)
T PRK11776 284 VLVRFANRSCSVLVATDVAARGLDIKALEAVIN--------YELARDPEVHV----------HRIGRTGRAGSKGLALSL 345 (460)
T ss_pred HHHHHHcCCCcEEEEecccccccchhcCCeEEE--------ecCCCCHhHhh----------hhcccccCCCCcceEEEE
Confidence 999999999999999999999999999999999 88887666665 9999999999 7999999
Q ss_pred cCHHHHHH
Q psy3476 551 YSEEQYSL 558 (1417)
Q Consensus 551 ~t~~~~~~ 558 (1417)
+++++...
T Consensus 346 ~~~~e~~~ 353 (460)
T PRK11776 346 VAPEEMQR 353 (460)
T ss_pred EchhHHHH
Confidence 99887654
|
|
| >KOG0331|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=336.75 Aligned_cols=213 Identities=23% Similarity=0.353 Sum_probs=165.9
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhcc-CCCCcEEEEccCCC--HHHHHHHhccCceEEEeCCcccceeEEec
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHS-TAEVKIILMSATIN--IELFHTYFNRIAKIIKVPGRLYPIQLEYH 391 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~-r~~~qvIlmSATln--~~~~~~~f~~~~~vi~v~gr~~pv~v~~~ 391 (1417)
..|++++++|+|||| |+++.+|...+.+++.+. +++.|++++|||.+ +..+++-|..+...+.+-+...-..-+
T Consensus 235 ~~l~~v~ylVLDEAD-rMldmGFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~-- 311 (519)
T KOG0331|consen 235 LNLSRVTYLVLDEAD-RMLDMGFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANH-- 311 (519)
T ss_pred ccccceeEEEeccHH-hhhccccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhc--
Confidence 357889999999999 999999999999999999 66668999999996 556665554444444433221000000
Q ss_pred cccccccccccCCCC-ChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHH
Q psy3476 392 PIVELDRTKSEKLDP-GPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQD 470 (1417)
Q Consensus 392 ~~~~~~~~~~~~~~~-~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~ 470 (1417)
.. .......+. .....+...|.+.. ...++++||||.|+..|++++..++. .+|.+..+||+.++++|+
T Consensus 312 ---~i-~qive~~~~~~K~~~l~~lL~~~~-~~~~~KvIIFc~tkr~~~~l~~~l~~-----~~~~a~~iHGd~sQ~eR~ 381 (519)
T KOG0331|consen 312 ---NI-RQIVEVCDETAKLRKLGKLLEDIS-SDSEGKVIIFCETKRTCDELARNLRR-----KGWPAVAIHGDKSQSERD 381 (519)
T ss_pred ---ch-hhhhhhcCHHHHHHHHHHHHHHHh-ccCCCcEEEEecchhhHHHHHHHHHh-----cCcceeeecccccHHHHH
Confidence 00 000011111 11223333444443 56678999999999999999999987 569999999999999999
Q ss_pred HHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEE
Q psy3476 471 RVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYR 549 (1417)
Q Consensus 471 ~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~ 549 (1417)
.+++.|++|+..||||||+|++|+|||+|++||| ||+|.+++.|+ ||+||+||.| .|.+|.
T Consensus 382 ~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIn--------ydfP~~vEdYV----------HRiGRTGRa~~~G~A~t 443 (519)
T KOG0331|consen 382 WVLKGFREGKSPVLVATDVAARGLDVPDVDLVIN--------YDFPNNVEDYV----------HRIGRTGRAGKKGTAIT 443 (519)
T ss_pred HHHHhcccCCcceEEEcccccccCCCccccEEEe--------CCCCCCHHHHH----------hhcCccccCCCCceEEE
Confidence 9999999999999999999999999999999999 99999988888 9999999988 799999
Q ss_pred ecCHHHHHH
Q psy3476 550 LYSEEQYSL 558 (1417)
Q Consensus 550 L~t~~~~~~ 558 (1417)
+++..++..
T Consensus 444 fft~~~~~~ 452 (519)
T KOG0331|consen 444 FFTSDNAKL 452 (519)
T ss_pred EEeHHHHHH
Confidence 999988764
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=334.58 Aligned_cols=309 Identities=18% Similarity=0.172 Sum_probs=224.0
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC------------CCcEEEecchHHHHHHHHHHHHHHHcccc
Q psy3476 41 AQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG------------FQRIACTQPRRIACISLSKRVAYETLSQY 108 (1417)
Q Consensus 41 ~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~------------~~~i~~tqPrr~aa~~~a~rva~e~~~~~ 108 (1417)
..+|.+++..+.++++++++||||||||..+..++++.. ..++++..|+|.+|.|+.+.+ ..+....
T Consensus 32 t~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~-~~l~~~~ 110 (423)
T PRK04837 32 TPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADA-EPLAQAT 110 (423)
T ss_pred CHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHH-HHHhccC
Confidence 467899999999999999999999999988666654311 246999999999999997754 3444445
Q ss_pred CCeEEEEEeeccc------ccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhH
Q psy3476 109 SNLVGYQIRFEKH------RREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPK 182 (1417)
Q Consensus 109 g~~vGy~ir~e~~------~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (1417)
|-.++.....+.. ......|+++|+|.|++.+...
T Consensus 111 ~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~--------------------------------------- 151 (423)
T PRK04837 111 GLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQN--------------------------------------- 151 (423)
T ss_pred CceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcC---------------------------------------
Confidence 5566554433221 1234578888887777654321
Q ss_pred HhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCC
Q psy3476 183 RRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPP 262 (1417)
Q Consensus 183 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~ 262 (1417)
T Consensus 152 -------------------------------------------------------------------------------- 151 (423)
T PRK04837 152 -------------------------------------------------------------------------------- 151 (423)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHH
Q psy3476 263 LHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVI 342 (1417)
Q Consensus 263 ~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~ll 342 (1417)
...+++++++|+|||| +.++.+|...+.
T Consensus 152 ---------------------------------------------------~~~l~~v~~lViDEad-~l~~~~f~~~i~ 179 (423)
T PRK04837 152 ---------------------------------------------------HINLGAIQVVVLDEAD-RMFDLGFIKDIR 179 (423)
T ss_pred ---------------------------------------------------CcccccccEEEEecHH-HHhhcccHHHHH
Confidence 0236678999999999 677777777766
Q ss_pred HHHhccC--CCCcEEEEccCCCHH--HHH-HHhccCceEEEeCCccc---ceeEEeccccccccccccCCCCChHHHHHH
Q psy3476 343 KCLLHST--AEVKIILMSATINIE--LFH-TYFNRIAKIIKVPGRLY---PIQLEYHPIVELDRTKSEKLDPGPYIRILS 414 (1417)
Q Consensus 343 k~l~~~r--~~~qvIlmSATln~~--~~~-~~f~~~~~vi~v~gr~~---pv~v~~~~~~~~~~~~~~~~~~~~~~~il~ 414 (1417)
..+...+ ...+.+++|||++.. .+. .++ .++..+.+..... .+...+... .......
T Consensus 180 ~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~-~~p~~i~v~~~~~~~~~i~~~~~~~--------------~~~~k~~ 244 (423)
T PRK04837 180 WLFRRMPPANQRLNMLFSATLSYRVRELAFEHM-NNPEYVEVEPEQKTGHRIKEELFYP--------------SNEEKMR 244 (423)
T ss_pred HHHHhCCCccceeEEEEeccCCHHHHHHHHHHC-CCCEEEEEcCCCcCCCceeEEEEeC--------------CHHHHHH
Confidence 6555554 345678999999643 333 344 3444444432211 111111000 0111222
Q ss_pred HHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccC
Q psy3476 415 IIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSI 494 (1417)
Q Consensus 415 ~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GI 494 (1417)
.+...+.....+++||||+++..++.+++.|.. .++.+..+||++++++|..+++.|++|+.+|||||+++++||
T Consensus 245 ~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~-----~g~~v~~lhg~~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGi 319 (423)
T PRK04837 245 LLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAA-----DGHRVGLLTGDVAQKKRLRILEEFTRGDLDILVATDVAARGL 319 (423)
T ss_pred HHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHh-----CCCcEEEecCCCChhHHHHHHHHHHcCCCcEEEEechhhcCC
Confidence 333333333467899999999999999999986 578999999999999999999999999999999999999999
Q ss_pred CcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHHh
Q psy3476 495 TIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLL 559 (1417)
Q Consensus 495 dIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~l 559 (1417)
|||+|++||+ ||.|.+...|. ||+|||||.| .|.|+.|+++++...+
T Consensus 320 Dip~v~~VI~--------~d~P~s~~~yi----------qR~GR~gR~G~~G~ai~~~~~~~~~~~ 367 (423)
T PRK04837 320 HIPAVTHVFN--------YDLPDDCEDYV----------HRIGRTGRAGASGHSISLACEEYALNL 367 (423)
T ss_pred CccccCEEEE--------eCCCCchhheE----------eccccccCCCCCeeEEEEeCHHHHHHH
Confidence 9999999999 99998877777 9999999999 7999999998876543
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=343.58 Aligned_cols=207 Identities=20% Similarity=0.330 Sum_probs=157.2
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCH--HHHHHHhcc-CceEEEeCCcc----cceeE
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINI--ELFHTYFNR-IAKIIKVPGRL----YPIQL 388 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~--~~~~~~f~~-~~~vi~v~gr~----~pv~v 388 (1417)
.+.++++||||||| ++++.+|...+.+.+...+++.|++++|||++. +.+.+.+.. ....+.+.... ..+..
T Consensus 274 ~l~~v~~lViDEAd-~mld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~~~~~v~i~vg~~~l~~~~~i~q 352 (545)
T PTZ00110 274 NLRRVTYLVLDEAD-RMLDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLCKEEPVHVNVGSLDLTACHNIKQ 352 (545)
T ss_pred ChhhCcEEEeehHH-hhhhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHhccCCEEEEECCCccccCCCeeE
Confidence 46678999999999 888889998888888888899999999999953 455555433 22233322110 00110
Q ss_pred EeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHH
Q psy3476 389 EYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEE 468 (1417)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~e 468 (1417)
.+.. .. .......+...+.... ...+++||||++++.++.+++.|.. .++.+..+||++++++
T Consensus 353 ~~~~--~~--------~~~k~~~L~~ll~~~~--~~~~k~LIF~~t~~~a~~l~~~L~~-----~g~~~~~ihg~~~~~e 415 (545)
T PTZ00110 353 EVFV--VE--------EHEKRGKLKMLLQRIM--RDGDKILIFVETKKGADFLTKELRL-----DGWPALCIHGDKKQEE 415 (545)
T ss_pred EEEE--Ee--------chhHHHHHHHHHHHhc--ccCCeEEEEecChHHHHHHHHHHHH-----cCCcEEEEECCCcHHH
Confidence 0000 00 0011223334443332 1467999999999999999999976 5788999999999999
Q ss_pred HHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeE
Q psy3476 469 QDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVC 547 (1417)
Q Consensus 469 R~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~c 547 (1417)
|..+++.|++|+.+|||||+++++|||||+|++||+ ||.|..+..|+ ||+||+||.| +|.|
T Consensus 416 R~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~--------~d~P~s~~~yv----------qRiGRtGR~G~~G~a 477 (545)
T PTZ00110 416 RTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVIN--------FDFPNQIEDYV----------HRIGRTGRAGAKGAS 477 (545)
T ss_pred HHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEE--------eCCCCCHHHHH----------HHhcccccCCCCceE
Confidence 999999999999999999999999999999999999 99887665555 9999999999 7999
Q ss_pred EEecCHHHHHH
Q psy3476 548 YRLYSEEQYSL 558 (1417)
Q Consensus 548 y~L~t~~~~~~ 558 (1417)
|.|+++++...
T Consensus 478 i~~~~~~~~~~ 488 (545)
T PTZ00110 478 YTFLTPDKYRL 488 (545)
T ss_pred EEEECcchHHH
Confidence 99999887653
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-32 Score=332.38 Aligned_cols=313 Identities=19% Similarity=0.210 Sum_probs=228.3
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc---------CCCcEEEecchHHHHHHHHHHHHHHHccccCC
Q psy3476 40 VAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA---------GFQRIACTQPRRIACISLSKRVAYETLSQYSN 110 (1417)
Q Consensus 40 ~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~---------~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~ 110 (1417)
.+.+|.+++..+.++++++++||||||||..+..++++. +..++++..|+|.+|.|+++++.. +....+.
T Consensus 24 p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~-l~~~~~~ 102 (434)
T PRK11192 24 PTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARE-LAKHTHL 102 (434)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHH-HHccCCc
Confidence 457899999999999999999999999998765544431 235799999999999999886543 3334444
Q ss_pred eEEEEEeecc------cccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHh
Q psy3476 111 LVGYQIRFEK------HRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRR 184 (1417)
Q Consensus 111 ~vGy~ir~e~------~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (1417)
.++....... ....+..|+++|+|.|++.+...
T Consensus 103 ~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~----------------------------------------- 141 (434)
T PRK11192 103 DIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEE----------------------------------------- 141 (434)
T ss_pred EEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcC-----------------------------------------
Confidence 5544332111 12334578888888777654321
Q ss_pred hhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCc
Q psy3476 185 KMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLH 264 (1417)
Q Consensus 185 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~ 264 (1417)
T Consensus 142 -------------------------------------------------------------------------------- 141 (434)
T PRK11192 142 -------------------------------------------------------------------------------- 141 (434)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHH
Q psy3476 265 CGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKC 344 (1417)
Q Consensus 265 ~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~ 344 (1417)
...+.++++||+|||| ++++.+|...+...
T Consensus 142 -------------------------------------------------~~~~~~v~~lViDEah-~~l~~~~~~~~~~i 171 (434)
T PRK11192 142 -------------------------------------------------NFDCRAVETLILDEAD-RMLDMGFAQDIETI 171 (434)
T ss_pred -------------------------------------------------CcCcccCCEEEEECHH-HHhCCCcHHHHHHH
Confidence 0235678899999999 77888888777777
Q ss_pred HhccCCCCcEEEEccCCCH---HHHHHHhccCceEEEeCCccc-c--eeEEeccccccccccccCCCCChHHHHHHHHHh
Q psy3476 345 LLHSTAEVKIILMSATINI---ELFHTYFNRIAKIIKVPGRLY-P--IQLEYHPIVELDRTKSEKLDPGPYIRILSIIDK 418 (1417)
Q Consensus 345 l~~~r~~~qvIlmSATln~---~~~~~~f~~~~~vi~v~gr~~-p--v~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~ 418 (1417)
....+...|+++||||++. ..+..++..+...+.+..... . +...+.. ..........+..
T Consensus 172 ~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~i~~~~~~-------------~~~~~~k~~~l~~ 238 (434)
T PRK11192 172 AAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVEVEAEPSRRERKKIHQWYYR-------------ADDLEHKTALLCH 238 (434)
T ss_pred HHhCccccEEEEEEeecCHHHHHHHHHHHccCCEEEEecCCcccccCceEEEEE-------------eCCHHHHHHHHHH
Confidence 6667778899999999963 455555543333333322110 0 1111100 0111233444444
Q ss_pred hCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCC
Q psy3476 419 KYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDG 498 (1417)
Q Consensus 419 ~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~ 498 (1417)
.+.....+++||||+++++++.+++.|.. .++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+
T Consensus 239 l~~~~~~~~~lVF~~s~~~~~~l~~~L~~-----~~~~~~~l~g~~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~ 313 (434)
T PRK11192 239 LLKQPEVTRSIVFVRTRERVHELAGWLRK-----AGINCCYLEGEMVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDD 313 (434)
T ss_pred HHhcCCCCeEEEEeCChHHHHHHHHHHHh-----CCCCEEEecCCCCHHHHHHHHHHHhCCCCcEEEEccccccCccCCC
Confidence 44434568999999999999999999987 5788999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHHhh
Q psy3476 499 IRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLLA 560 (1417)
Q Consensus 499 V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~l~ 560 (1417)
|++||+ ||.|.....| .||+|||||.| .|.++.+++..+...+.
T Consensus 314 v~~VI~--------~d~p~s~~~y----------iqr~GR~gR~g~~g~ai~l~~~~d~~~~~ 358 (434)
T PRK11192 314 VSHVIN--------FDMPRSADTY----------LHRIGRTGRAGRKGTAISLVEAHDHLLLG 358 (434)
T ss_pred CCEEEE--------ECCCCCHHHH----------hhcccccccCCCCceEEEEecHHHHHHHH
Confidence 999999 8887655544 49999999998 79999999988876544
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-32 Score=339.94 Aligned_cols=209 Identities=22% Similarity=0.281 Sum_probs=153.8
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCC--HHHHHHHhccCceEEEeCCcccce---eEE
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATIN--IELFHTYFNRIAKIIKVPGRLYPI---QLE 389 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln--~~~~~~~f~~~~~vi~v~gr~~pv---~v~ 389 (1417)
..++++++||+|||| ++++.+|...+.+.+... ++.|++++|||++ .+.+..++..+...+.+.....+. ...
T Consensus 266 ~~l~~v~~lViDEad-~ml~~gf~~~i~~i~~~l-~~~q~l~~SATl~~~v~~l~~~~~~~~~~i~~~~~~~~~~~v~q~ 343 (518)
T PLN00206 266 IELDNVSVLVLDEVD-CMLERGFRDQVMQIFQAL-SQPQVLLFSATVSPEVEKFASSLAKDIILISIGNPNRPNKAVKQL 343 (518)
T ss_pred ccchheeEEEeecHH-HHhhcchHHHHHHHHHhC-CCCcEEEEEeeCCHHHHHHHHHhCCCCEEEEeCCCCCCCcceeEE
Confidence 346788999999999 677777777666655444 5689999999995 456777775555555543221111 111
Q ss_pred eccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHH
Q psy3476 390 YHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQ 469 (1417)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR 469 (1417)
+.... .......+.+.+.... ...+++||||+++..++.+++.|... .++.+..+||++++++|
T Consensus 344 ~~~~~----------~~~k~~~l~~~l~~~~--~~~~~~iVFv~s~~~a~~l~~~L~~~----~g~~~~~~Hg~~~~~eR 407 (518)
T PLN00206 344 AIWVE----------TKQKKQKLFDILKSKQ--HFKPPAVVFVSSRLGADLLANAITVV----TGLKALSIHGEKSMKER 407 (518)
T ss_pred EEecc----------chhHHHHHHHHHHhhc--ccCCCEEEEcCCchhHHHHHHHHhhc----cCcceEEeeCCCCHHHH
Confidence 10000 0011123333333221 22468999999999999999988642 46789999999999999
Q ss_pred HHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEE
Q psy3476 470 DRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCY 548 (1417)
Q Consensus 470 ~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy 548 (1417)
..+++.|++|+.+|||||+++++|||+|+|++||+ ||.|.+... |.||+|||||.| +|.++
T Consensus 408 ~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~--------~d~P~s~~~----------yihRiGRaGR~g~~G~ai 469 (518)
T PLN00206 408 REVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVII--------FDMPNTIKE----------YIHQIGRASRMGEKGTAI 469 (518)
T ss_pred HHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEE--------eCCCCCHHH----------HHHhccccccCCCCeEEE
Confidence 99999999999999999999999999999999999 888775544 559999999999 79999
Q ss_pred EecCHHHHHHh
Q psy3476 549 RLYSEEQYSLL 559 (1417)
Q Consensus 549 ~L~t~~~~~~l 559 (1417)
.++++++...+
T Consensus 470 ~f~~~~~~~~~ 480 (518)
T PLN00206 470 VFVNEEDRNLF 480 (518)
T ss_pred EEEchhHHHHH
Confidence 99998876544
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=333.74 Aligned_cols=206 Identities=22% Similarity=0.302 Sum_probs=156.9
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCH--HHHHHHhccCceEEEeCCcccc---eeEEe
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINI--ELFHTYFNRIAKIIKVPGRLYP---IQLEY 390 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~--~~~~~~f~~~~~vi~v~gr~~p---v~v~~ 390 (1417)
.++++++||||||| +.++.++...+...+...+...|+++||||++. ..+..++..+...+.+..+... +..++
T Consensus 146 ~l~~v~~lViDEah-~ll~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~ 224 (456)
T PRK10590 146 KLDQVEILVLDEAD-RMLDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHV 224 (456)
T ss_pred ccccceEEEeecHH-HHhccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEE
Confidence 46788999999999 777888887777777777788899999999963 4555555344444444322211 11111
Q ss_pred ccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHH
Q psy3476 391 HPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQD 470 (1417)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~ 470 (1417)
.. .+ .......+...+......++||||+++.+++.+++.|.. .++.+..+||++++++|.
T Consensus 225 ~~-----------~~---~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~-----~g~~~~~lhg~~~~~~R~ 285 (456)
T PRK10590 225 HF-----------VD---KKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNK-----DGIRSAAIHGNKSQGART 285 (456)
T ss_pred EE-----------cC---HHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHH-----CCCCEEEEECCCCHHHHH
Confidence 10 00 011122233333334457899999999999999999976 578899999999999999
Q ss_pred HHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEE
Q psy3476 471 RVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYR 549 (1417)
Q Consensus 471 ~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~ 549 (1417)
.+++.|++|+.+|||||+++++|||||+|++||+ ||.|.....|+ ||+|||||.| .|.|+.
T Consensus 286 ~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~--------~~~P~~~~~yv----------qR~GRaGR~g~~G~ai~ 347 (456)
T PRK10590 286 RALADFKSGDIRVLVATDIAARGLDIEELPHVVN--------YELPNVPEDYV----------HRIGRTGRAAATGEALS 347 (456)
T ss_pred HHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEE--------eCCCCCHHHhh----------hhccccccCCCCeeEEE
Confidence 9999999999999999999999999999999999 99887655555 9999999999 799999
Q ss_pred ecCHHHHHHh
Q psy3476 550 LYSEEQYSLL 559 (1417)
Q Consensus 550 L~t~~~~~~l 559 (1417)
+++.++...+
T Consensus 348 l~~~~d~~~~ 357 (456)
T PRK10590 348 LVCVDEHKLL 357 (456)
T ss_pred EecHHHHHHH
Confidence 9998876543
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-32 Score=337.90 Aligned_cols=312 Identities=23% Similarity=0.274 Sum_probs=237.2
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC-----C-c-EEEecchHHHHHHHHHHHHHHHcccc-CCe
Q psy3476 40 VAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF-----Q-R-IACTQPRRIACISLSKRVAYETLSQY-SNL 111 (1417)
Q Consensus 40 ~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~-----~-~-i~~tqPrr~aa~~~a~rva~e~~~~~-g~~ 111 (1417)
....|...+..+..++++++.|+||||||..+..++++.-. . . .++..|+|.+|.|+++.+..- +... +-.
T Consensus 52 pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~-~~~~~~~~ 130 (513)
T COG0513 52 PTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKL-GKNLGGLR 130 (513)
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHH-HhhcCCcc
Confidence 34668899999999999999999999999887777776422 1 2 789999999999998755433 3322 233
Q ss_pred EEEEEeeccc------ccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhh
Q psy3476 112 VGYQIRFEKH------RREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRK 185 (1417)
Q Consensus 112 vGy~ir~e~~------~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1417)
+...+...+. .....+|+++|||.|++++...
T Consensus 131 ~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~------------------------------------------ 168 (513)
T COG0513 131 VAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG------------------------------------------ 168 (513)
T ss_pred EEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC------------------------------------------
Confidence 4443333221 1224789999999888765432
Q ss_pred hhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcC
Q psy3476 186 MLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHC 265 (1417)
Q Consensus 186 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~ 265 (1417)
T Consensus 169 -------------------------------------------------------------------------------- 168 (513)
T COG0513 169 -------------------------------------------------------------------------------- 168 (513)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHH
Q psy3476 266 GGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCL 345 (1417)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l 345 (1417)
...++++.++|+|||| |+++.+|...+.+++
T Consensus 169 ------------------------------------------------~l~l~~v~~lVlDEAD-rmLd~Gf~~~i~~I~ 199 (513)
T COG0513 169 ------------------------------------------------KLDLSGVETLVLDEAD-RMLDMGFIDDIEKIL 199 (513)
T ss_pred ------------------------------------------------CcchhhcCEEEeccHh-hhhcCCCHHHHHHHH
Confidence 0346789999999999 899999999999999
Q ss_pred hccCCCCcEEEEccCCCH--HHHHHHhccCceEEEeCCcc-----cceeEEeccccccccccccCCCCChHHHHHHHHHh
Q psy3476 346 LHSTAEVKIILMSATINI--ELFHTYFNRIAKIIKVPGRL-----YPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDK 418 (1417)
Q Consensus 346 ~~~r~~~qvIlmSATln~--~~~~~~f~~~~~vi~v~gr~-----~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~ 418 (1417)
...+.+.|++++|||++. ..++.-+..++..+.+.... ..++..|..... .......+..
T Consensus 200 ~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~~-------------~~~k~~~L~~ 266 (513)
T COG0513 200 KALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVES-------------EEEKLELLLK 266 (513)
T ss_pred HhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeCC-------------HHHHHHHHHH
Confidence 999999999999999964 34443333455555554211 112222221111 0123444444
Q ss_pred hCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCC
Q psy3476 419 KYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDG 498 (1417)
Q Consensus 419 ~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~ 498 (1417)
.+.....+++||||+|+..++.++..|.. .++.+..+||+|++++|.++++.|++|..+|+||||+|++|||||+
T Consensus 267 ll~~~~~~~~IVF~~tk~~~~~l~~~l~~-----~g~~~~~lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~ 341 (513)
T COG0513 267 LLKDEDEGRVIVFVRTKRLVEELAESLRK-----RGFKVAALHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPD 341 (513)
T ss_pred HHhcCCCCeEEEEeCcHHHHHHHHHHHHH-----CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccc
Confidence 44444556899999999999999999987 6799999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHH-HHHHh
Q psy3476 499 IRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEE-QYSLL 559 (1417)
Q Consensus 499 V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~-~~~~l 559 (1417)
|.+||| ||.|.....|+ ||+||+||.| .|.++.|+++. +...+
T Consensus 342 v~~Vin--------yD~p~~~e~yv----------HRiGRTgRaG~~G~ai~fv~~~~e~~~l 386 (513)
T COG0513 342 VSHVIN--------YDLPLDPEDYV----------HRIGRTGRAGRKGVAISFVTEEEEVKKL 386 (513)
T ss_pred cceeEE--------ccCCCCHHHhe----------eccCccccCCCCCeEEEEeCcHHHHHHH
Confidence 999999 99999888888 9999999999 79999999864 55443
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-32 Score=340.47 Aligned_cols=312 Identities=20% Similarity=0.259 Sum_probs=228.6
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC-----CCcEEEecchHHHHHHHHHHHHHHHccccCCeEE
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG-----FQRIACTQPRRIACISLSKRVAYETLSQYSNLVG 113 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~-----~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vG 113 (1417)
..+.+|.+++..+.+++++|++||||||||.++..++++.. ..+++|+.|+|.+|.|+++.+..-.....|..+.
T Consensus 28 ~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~ 107 (629)
T PRK11634 28 KPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVV 107 (629)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEE
Confidence 34577999999999999999999999999998777766532 2478999999999999988776544332233333
Q ss_pred EEEeecc------cccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhh
Q psy3476 114 YQIRFEK------HRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKML 187 (1417)
Q Consensus 114 y~ir~e~------~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 187 (1417)
......+ .....+.|+++|+|.+++.+...
T Consensus 108 ~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~-------------------------------------------- 143 (629)
T PRK11634 108 ALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG-------------------------------------------- 143 (629)
T ss_pred EEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcC--------------------------------------------
Confidence 2222111 11234678888888777655332
Q ss_pred ccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCC
Q psy3476 188 KADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGG 267 (1417)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~ 267 (1417)
T Consensus 144 -------------------------------------------------------------------------------- 143 (629)
T PRK11634 144 -------------------------------------------------------------------------------- 143 (629)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhc
Q psy3476 268 EIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLH 347 (1417)
Q Consensus 268 ~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~ 347 (1417)
...++++++||||||| .+++.+|...+...+..
T Consensus 144 ----------------------------------------------~l~l~~l~~lVlDEAd-~ml~~gf~~di~~Il~~ 176 (629)
T PRK11634 144 ----------------------------------------------TLDLSKLSGLVLDEAD-EMLRMGFIEDVETIMAQ 176 (629)
T ss_pred ----------------------------------------------CcchhhceEEEeccHH-HHhhcccHHHHHHHHHh
Confidence 0236678999999999 56777888888888888
Q ss_pred cCCCCcEEEEccCCC--HHHHHHHhccCceEEEeCCccc--c-eeEEeccccccccccccCCCCChHHHHHHHHHhhCCC
Q psy3476 348 STAEVKIILMSATIN--IELFHTYFNRIAKIIKVPGRLY--P-IQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPR 422 (1417)
Q Consensus 348 ~r~~~qvIlmSATln--~~~~~~~f~~~~~vi~v~gr~~--p-v~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~ 422 (1417)
.+...|+++||||++ ...+.+.|..+...+.+..... + +...|.... .......+.+.+..
T Consensus 177 lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~--------------~~~k~~~L~~~L~~ 242 (629)
T PRK11634 177 IPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW--------------GMRKNEALVRFLEA 242 (629)
T ss_pred CCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEec--------------hhhHHHHHHHHHHh
Confidence 888999999999995 3344444434555555443221 1 111111100 00111222222222
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEE
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFV 502 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~V 502 (1417)
....++||||+++..++.+++.|.. .++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||+|+|++|
T Consensus 243 ~~~~~~IVF~~tk~~a~~l~~~L~~-----~g~~~~~lhgd~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~V 317 (629)
T PRK11634 243 EDFDAAIIFVRTKNATLEVAEALER-----NGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLV 317 (629)
T ss_pred cCCCCEEEEeccHHHHHHHHHHHHh-----CCCCEEEeeCCCCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEE
Confidence 3457899999999999999999987 67889999999999999999999999999999999999999999999999
Q ss_pred EcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHH
Q psy3476 503 VDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSL 558 (1417)
Q Consensus 503 IdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~ 558 (1417)
|+ ||.|.+...|+ ||+|||||.| .|.++.+++..+...
T Consensus 318 I~--------~d~P~~~e~yv----------qRiGRtGRaGr~G~ai~~v~~~e~~~ 356 (629)
T PRK11634 318 VN--------YDIPMDSESYV----------HRIGRTGRAGRAGRALLFVENRERRL 356 (629)
T ss_pred EE--------eCCCCCHHHHH----------HHhccccCCCCcceEEEEechHHHHH
Confidence 99 99887655555 9999999999 699999998876543
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-32 Score=338.05 Aligned_cols=313 Identities=17% Similarity=0.199 Sum_probs=221.5
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC------------CCcEEEecchHHHHHHHHHHHHHHHccc
Q psy3476 40 VAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG------------FQRIACTQPRRIACISLSKRVAYETLSQ 107 (1417)
Q Consensus 40 ~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~------------~~~i~~tqPrr~aa~~~a~rva~e~~~~ 107 (1417)
.+.+|.+.+..+.++++++++||||||||..+..++++.. ..++++..|+|.+|.|+++.+ ..++..
T Consensus 32 ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~-~~l~~~ 110 (572)
T PRK04537 32 CTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDA-VKFGAD 110 (572)
T ss_pred CCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHH-HHHhcc
Confidence 3567899999999999999999999999998776665421 247999999999999998874 444445
Q ss_pred cCCeEEEEEeeccc------ccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhh
Q psy3476 108 YSNLVGYQIRFEKH------RREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAP 181 (1417)
Q Consensus 108 ~g~~vGy~ir~e~~------~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (1417)
.|-.|+........ ......|+++|+|.|++.+...
T Consensus 111 ~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~-------------------------------------- 152 (572)
T PRK04537 111 LGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQH-------------------------------------- 152 (572)
T ss_pred CCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhc--------------------------------------
Confidence 55555543332211 1234567788887777654321
Q ss_pred HHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCC
Q psy3476 182 KRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISP 261 (1417)
Q Consensus 182 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~ 261 (1417)
T Consensus 153 -------------------------------------------------------------------------------- 152 (572)
T PRK04537 153 -------------------------------------------------------------------------------- 152 (572)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHH
Q psy3476 262 PLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGV 341 (1417)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~l 341 (1417)
....+.++++||||||| +.++.+|...+
T Consensus 153 ---------------------------------------------------~~~~l~~v~~lViDEAh-~lld~gf~~~i 180 (572)
T PRK04537 153 ---------------------------------------------------KVVSLHACEICVLDEAD-RMFDLGFIKDI 180 (572)
T ss_pred ---------------------------------------------------cccchhheeeeEecCHH-HHhhcchHHHH
Confidence 00235578899999999 56677777766
Q ss_pred HHHHhccCC--CCcEEEEccCCCHH---HHHHHhccCceEEEeCCccc-ceeEEeccccccccccccCCCCChHHHHHHH
Q psy3476 342 IKCLLHSTA--EVKIILMSATINIE---LFHTYFNRIAKIIKVPGRLY-PIQLEYHPIVELDRTKSEKLDPGPYIRILSI 415 (1417)
Q Consensus 342 lk~l~~~r~--~~qvIlmSATln~~---~~~~~f~~~~~vi~v~gr~~-pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~ 415 (1417)
...+...+. +.|+++||||++.. ....++ .....+.+..... ...+....... ........
T Consensus 181 ~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l-~~p~~i~v~~~~~~~~~i~q~~~~~------------~~~~k~~~ 247 (572)
T PRK04537 181 RFLLRRMPERGTRQTLLFSATLSHRVLELAYEHM-NEPEKLVVETETITAARVRQRIYFP------------ADEEKQTL 247 (572)
T ss_pred HHHHHhcccccCceEEEEeCCccHHHHHHHHHHh-cCCcEEEeccccccccceeEEEEec------------CHHHHHHH
Confidence 666555543 67999999999643 233444 3322232222111 11111000000 01112223
Q ss_pred HHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCC
Q psy3476 416 IDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSIT 495 (1417)
Q Consensus 416 l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GId 495 (1417)
+...+......++||||++++.++.+++.|.+ .++.+..+||+|++.+|..+++.|++|+.+|||||+++++|||
T Consensus 248 L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~-----~g~~v~~lhg~l~~~eR~~il~~Fr~G~~~VLVaTdv~arGID 322 (572)
T PRK04537 248 LLGLLSRSEGARTMVFVNTKAFVERVARTLER-----HGYRVGVLSGDVPQKKRESLLNRFQKGQLEILVATDVAARGLH 322 (572)
T ss_pred HHHHHhcccCCcEEEEeCCHHHHHHHHHHHHH-----cCCCEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEehhhhcCCC
Confidence 33333334567899999999999999999987 5688999999999999999999999999999999999999999
Q ss_pred cCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHHh
Q psy3476 496 IDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLL 559 (1417)
Q Consensus 496 IP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~l 559 (1417)
||+|++||+ ||.|.....| .||+|||||.| .|.|+.|+++.+...+
T Consensus 323 ip~V~~VIn--------yd~P~s~~~y----------vqRiGRaGR~G~~G~ai~~~~~~~~~~l 369 (572)
T PRK04537 323 IDGVKYVYN--------YDLPFDAEDY----------VHRIGRTARLGEEGDAISFACERYAMSL 369 (572)
T ss_pred ccCCCEEEE--------cCCCCCHHHH----------hhhhcccccCCCCceEEEEecHHHHHHH
Confidence 999999999 8887655544 59999999999 7999999988765443
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-31 Score=334.02 Aligned_cols=417 Identities=21% Similarity=0.247 Sum_probs=263.0
Q ss_pred ccchhhhhhccccccccccccCCCCccEEEEecCccc--ccCcchHHHHHHHHhccCCCCcEEEEccCC-CHHHHHHHhc
Q psy3476 295 DFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHER--HLHGDFLLGVIKCLLHSTAEVKIILMSATI-NIELFHTYFN 371 (1417)
Q Consensus 295 d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER--~l~~d~ll~llk~l~~~r~~~qvIlmSATl-n~~~~~~~f~ 371 (1417)
|++|+||++++........ ++.++++|||||+|-- ..++..++.++.+.....+..|+|++|||+ |..++++|+
T Consensus 124 ~ViVtT~EK~Dsl~R~~~~--~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~~~rivgLSATlpN~~evA~wL- 200 (766)
T COG1204 124 DVIVTTPEKLDSLTRKRPS--WIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNELIRIVGLSATLPNAEEVADWL- 200 (766)
T ss_pred CEEEEchHHhhHhhhcCcc--hhhcccEEEEeeeeecCCcccCceehhHHHHHHhhCcceEEEEEeeecCCHHHHHHHh-
Confidence 5667777777765554432 7889999999999921 124557788888887777789999999999 899999999
Q ss_pred cCceEEEeCCcccceeEE--eccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhh
Q psy3476 372 RIAKIIKVPGRLYPIQLE--YHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYN 449 (1417)
Q Consensus 372 ~~~~vi~v~gr~~pv~v~--~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~ 449 (1417)
++..+...+++.|..-. +.......................+.+...+ .++|++||||++++.+...++.+....
T Consensus 201 -~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~--~~~~qvLvFv~sR~~a~~~A~~l~~~~ 277 (766)
T COG1204 201 -NAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESL--AEGGQVLVFVHSRKEAEKTAKKLRIKM 277 (766)
T ss_pred -CCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHH--hcCCeEEEEEecCchHHHHHHHHHHHH
Confidence 45544555555443211 1111000000000001111223333333333 457899999999999999999987411
Q ss_pred h----------------c----------------cCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcC
Q psy3476 450 E----------------K----------------SQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITID 497 (1417)
Q Consensus 450 ~----------------~----------------~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP 497 (1417)
. . .-...+..+|+||+.++|..+++.|+.|++|||+||+++++|||.|
T Consensus 278 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLP 357 (766)
T COG1204 278 SATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLP 357 (766)
T ss_pred hhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCc
Confidence 0 0 0122467789999999999999999999999999999999999999
Q ss_pred CeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEec-CHHHHH---HhhccCCCccccc
Q psy3476 498 GIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLY-SEEQYS---LLAEYSTPEIRRV 570 (1417)
Q Consensus 498 ~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~-t~~~~~---~l~~~~~pEI~r~ 570 (1417)
+-++||. ...+||+..+ ...+++.++.||.|||||+| -|..+.+. +.++.+ .......||....
T Consensus 358 A~~VIIk----~~~~y~~~~g-----~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~~~~~~~~~~~~~~~e~~~s 428 (766)
T COG1204 358 ARTVIIK----DTRRYDPKGG-----IVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHDELEYLAELYIQSEPEPIES 428 (766)
T ss_pred ceEEEEe----eeEEEcCCCC-----eEECchhhHhhccCcCCCCCcCCCCcEEEEecCccchhHHHHHhhccCcchHHH
Confidence 9999995 3456776222 45789999999999999999 36666555 333222 2222344444111
Q ss_pred ------ChHHHHHHHHhhCCCCCc-----------CCCCCC----CCCcchhHHHHHHHHhcC-CCCCC---CCcChhhh
Q psy3476 571 ------SIDSLLLSLVCMGLGDVR-----------KFPFLE----APPAENIESSVRSLTQHG-AIDSK---ERVTSLGR 625 (1417)
Q Consensus 571 ------~L~~~lL~lk~lgi~~~~-----------~f~~l~----pP~~~~l~~Al~~L~~lG-aId~~---~~lT~LG~ 625 (1417)
++...++.+.+.+ +.. .|.... --....+..++..|.+.+ .++.. -..|++|+
T Consensus 429 ~l~~~~~~~~~l~~v~~~~--~~v~~~~~~~f~~~t~~~~~~~~~~~~~~~i~~~~~~L~~~~~~~~~~~~~~~ate~g~ 506 (766)
T COG1204 429 KLGDELNLRTFLLGVISVG--DAVSWLELTDFYERTFYNPQTYGEGMLREEILASLRYLEENGLILDADWEALHATELGK 506 (766)
T ss_pred hhcccccchheEEEEEecc--chhhHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHhccceeeccccccchhHHHH
Confidence 1222222222222 111 010111 123346788899999986 55543 35899999
Q ss_pred hccCCCCChhhHHHHHhhhccCCh-hhHHHHhhhccCCCccccCCCCChhHHHH-HhhcccCCCChH-------------
Q psy3476 626 FLSDLPVDIPLGKMLVFGSMFHQI-DTVLSLAAVLSVQSPFTNRAFRDPDCETA-RKELESNHGDPL------------- 690 (1417)
Q Consensus 626 ~ls~lpldp~lak~Ll~~~~f~cl-e~vl~IaA~Lsv~~~F~~~~~~~~~~~~~-r~~f~~~~sD~l------------- 690 (1417)
.+++++++|..++.+.......-. ...+.+...++..+.|.....+....... ...+. .++|.+
T Consensus 507 ~~s~~yi~~~sa~~~~~~l~~~~~~~~~~~~l~~is~~pd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~e~~ 585 (766)
T COG1204 507 LVSRLYIDPESAKIFRDLLAELALEPTEIGLLYLISLTPDLMPIKLRERESSELVLDELE-EQSDYLLGERLDELAVEYN 585 (766)
T ss_pred HhhhccCCHHHHHHHHHHHHHhccccchHHHhhhhhcCccchhhhhhhhhhhhhhHHHHH-hcchHHhhccccccchhhH
Confidence 999999999999998877654433 25667777777777776544333322221 11111 111111
Q ss_pred HHHH------HHHHHHHhhhhhchHHHHHHHcCCCHHHHHHHHHHHHHH
Q psy3476 691 TVLN------AYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQF 733 (1417)
Q Consensus 691 tlln------~f~~w~~~~~~~~~~~~WC~~~~L~~~~L~ei~~lr~QL 733 (1417)
.+++ ....|... .....-+.++++....+..+..-+.++
T Consensus 586 ~~l~~~~~~~~l~~wi~~----~~~~~i~~~~~~~~~dl~~~~~~a~w~ 630 (766)
T COG1204 586 LLLQALKTAARLLDWINE----ADEDEILNAYGVAPGDLLRIAETAEWL 630 (766)
T ss_pred HHHHHHHHHHHHHHHHHh----CcHHHHHHHhCcchhhHHhhcchhhhh
Confidence 1121 23345432 134456888999998888888877777
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.4e-31 Score=317.60 Aligned_cols=208 Identities=20% Similarity=0.328 Sum_probs=150.9
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHH--HHHHHhccCceEEEeCCcccc---eeEEe
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIE--LFHTYFNRIAKIIKVPGRLYP---IQLEY 390 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~--~~~~~f~~~~~vi~v~gr~~p---v~v~~ 390 (1417)
.++++++||+||+| +..+.++...+...+....++.|++++|||++.+ .+...+..+...+.+...... +...+
T Consensus 167 ~l~~i~lvViDEah-~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (401)
T PTZ00424 167 RVDDLKLFILDEAD-EMLSRGFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILVKKDELTLEGIRQFY 245 (401)
T ss_pred ccccccEEEEecHH-HHHhcchHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEeCCCCcccCCceEEE
Confidence 46788999999999 4455556656666666777889999999999643 333333233333333322111 11111
Q ss_pred ccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHH
Q psy3476 391 HPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQD 470 (1417)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~ 470 (1417)
... + ........+...+......++||||+++++++.+++.+.. .++.+..+||++++++|.
T Consensus 246 ~~~-----------~--~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~-----~~~~~~~~h~~~~~~~R~ 307 (401)
T PTZ00424 246 VAV-----------E--KEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHE-----RDFTVSCMHGDMDQKDRD 307 (401)
T ss_pred Eec-----------C--hHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHH-----CCCcEEEEeCCCCHHHHH
Confidence 100 0 0011122222222223456899999999999999999976 567899999999999999
Q ss_pred HHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEE
Q psy3476 471 RVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYR 549 (1417)
Q Consensus 471 ~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~ 549 (1417)
.+++.|++|+.+|||||+++++|||+|++++||+ ||.|.....|. ||+|||||.| .|.|+.
T Consensus 308 ~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~--------~~~p~s~~~y~----------qr~GRagR~g~~G~~i~ 369 (401)
T PTZ00424 308 LIMREFRSGSTRVLITTDLLARGIDVQQVSLVIN--------YDLPASPENYI----------HRIGRSGRFGRKGVAIN 369 (401)
T ss_pred HHHHHHHcCCCCEEEEcccccCCcCcccCCEEEE--------ECCCCCHHHEe----------ecccccccCCCCceEEE
Confidence 9999999999999999999999999999999999 88776555554 9999999998 799999
Q ss_pred ecCHHHHHHhh
Q psy3476 550 LYSEEQYSLLA 560 (1417)
Q Consensus 550 L~t~~~~~~l~ 560 (1417)
++++++.+.+.
T Consensus 370 l~~~~~~~~~~ 380 (401)
T PTZ00424 370 FVTPDDIEQLK 380 (401)
T ss_pred EEcHHHHHHHH
Confidence 99998876543
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.8e-31 Score=324.81 Aligned_cols=206 Identities=20% Similarity=0.313 Sum_probs=148.7
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccC--CCCcEEEEccCCC--HHHHHHHhccCceEEEeCCcccc---ee
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHST--AEVKIILMSATIN--IELFHTYFNRIAKIIKVPGRLYP---IQ 387 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r--~~~qvIlmSATln--~~~~~~~f~~~~~vi~v~gr~~p---v~ 387 (1417)
..++++++|||||+| +.++.++...+.+.+.... .+.|+|++|||++ ...+.+.+..+...+.+...... +.
T Consensus 233 ~~l~~l~~lViDEah-~l~~~~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 311 (475)
T PRK01297 233 VHLDMVEVMVLDEAD-RMLDMGFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIEPENVASDTVE 311 (475)
T ss_pred cccccCceEEechHH-HHHhcccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEeccCcCCCCccc
Confidence 357788999999999 5566666655555544443 3579999999994 34455444345544444322111 11
Q ss_pred EEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHH
Q psy3476 388 LEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLE 467 (1417)
Q Consensus 388 v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~ 467 (1417)
.++.... .. .....+.+.+.....+++||||+++++++.+++.|.+ .++.+..+||+++++
T Consensus 312 ~~~~~~~----------~~----~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~-----~~~~~~~~~g~~~~~ 372 (475)
T PRK01297 312 QHVYAVA----------GS----DKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVK-----DGINAAQLSGDVPQH 372 (475)
T ss_pred EEEEEec----------ch----hHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHH-----cCCCEEEEECCCCHH
Confidence 1111000 00 1112222222223456899999999999999999976 567899999999999
Q ss_pred HHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCe
Q psy3476 468 EQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGV 546 (1417)
Q Consensus 468 eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~ 546 (1417)
+|.++++.|++|+++|||||+++++|||||++++||+ ||.|. |.++|.||+|||||.| .|.
T Consensus 373 ~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~--------~~~P~----------s~~~y~Qr~GRaGR~g~~g~ 434 (475)
T PRK01297 373 KRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVIN--------FTLPE----------DPDDYVHRIGRTGRAGASGV 434 (475)
T ss_pred HHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEE--------eCCCC----------CHHHHHHhhCccCCCCCCce
Confidence 9999999999999999999999999999999999999 77765 4556669999999999 799
Q ss_pred EEEecCHHHHHH
Q psy3476 547 CYRLYSEEQYSL 558 (1417)
Q Consensus 547 cy~L~t~~~~~~ 558 (1417)
++.++++++...
T Consensus 435 ~i~~~~~~d~~~ 446 (475)
T PRK01297 435 SISFAGEDDAFQ 446 (475)
T ss_pred EEEEecHHHHHH
Confidence 999999876543
|
|
| >KOG0345|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-31 Score=306.08 Aligned_cols=326 Identities=21% Similarity=0.242 Sum_probs=242.1
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC--------C--cEEEecchHHHHHHHHHHHHHHHccccC
Q psy3476 40 VAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF--------Q--RIACTQPRRIACISLSKRVAYETLSQYS 109 (1417)
Q Consensus 40 ~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~--------~--~i~~tqPrr~aa~~~a~rva~e~~~~~g 109 (1417)
+.+.|...+..+.+++.+++.++||||||.++..++++.-. . -.++..|+|.+|.|+.+ |+..+.+.+-
T Consensus 29 mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~-V~~~F~~~l~ 107 (567)
T KOG0345|consen 29 MTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIRE-VAQPFLEHLP 107 (567)
T ss_pred cCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHH-HHHHHHHhhh
Confidence 45668999999999999999999999999998888776421 1 35677899999999876 4444444321
Q ss_pred C-eEEEEEeecc-------cccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhh
Q psy3476 110 N-LVGYQIRFEK-------HRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAP 181 (1417)
Q Consensus 110 ~-~vGy~ir~e~-------~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (1417)
+ .+-..|.+.+ -..+...|+++|||.|++.++...
T Consensus 108 ~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~------------------------------------- 150 (567)
T KOG0345|consen 108 NLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREA------------------------------------- 150 (567)
T ss_pred ccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchh-------------------------------------
Confidence 1 1111222211 123567799999999998876530
Q ss_pred HHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCC
Q psy3476 182 KRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISP 261 (1417)
Q Consensus 182 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~ 261 (1417)
T Consensus 151 -------------------------------------------------------------------------------- 150 (567)
T KOG0345|consen 151 -------------------------------------------------------------------------------- 150 (567)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHH
Q psy3476 262 PLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGV 341 (1417)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~l 341 (1417)
....+.+++++|+|||| |.++.+|...+
T Consensus 151 ---------------------------------------------------~~l~~rsLe~LVLDEAD-rLldmgFe~~~ 178 (567)
T KOG0345|consen 151 ---------------------------------------------------EKLSFRSLEILVLDEAD-RLLDMGFEASV 178 (567)
T ss_pred ---------------------------------------------------hhccccccceEEecchH-hHhcccHHHHH
Confidence 00124578899999999 99999999999
Q ss_pred HHHHhccCCCCcEEEEccCCC--HHHHHHHhccCceEEEeCCcc---cc--eeEEeccccccccccccCCCCChHHHHHH
Q psy3476 342 IKCLLHSTAEVKIILMSATIN--IELFHTYFNRIAKIIKVPGRL---YP--IQLEYHPIVELDRTKSEKLDPGPYIRILS 414 (1417)
Q Consensus 342 lk~l~~~r~~~qvIlmSATln--~~~~~~~f~~~~~vi~v~gr~---~p--v~v~~~~~~~~~~~~~~~~~~~~~~~il~ 414 (1417)
-.++..++.+.+.=+||||.+ ++++....-.|+..|.+.... .| +..+|.... +. ....
T Consensus 179 n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~-------------a~-eK~~ 244 (567)
T KOG0345|consen 179 NTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCE-------------AD-EKLS 244 (567)
T ss_pred HHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEec-------------HH-HHHH
Confidence 999999999999999999994 556666555666666665433 34 333333221 11 1223
Q ss_pred HHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccC
Q psy3476 415 IIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSI 494 (1417)
Q Consensus 415 ~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GI 494 (1417)
.+.+.+.+...+++|||.+|...++.....+..+. ....++.+||.|.+.+|.++++.|.+....+++|||+|+|||
T Consensus 245 ~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l---~~~~i~~iHGK~~q~~R~k~~~~F~~~~~~vl~~TDVaARGl 321 (567)
T KOG0345|consen 245 QLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLL---KKREIFSIHGKMSQKARAKVLEAFRKLSNGVLFCTDVAARGL 321 (567)
T ss_pred HHHHHHhccccccEEEEecCcchHHHHHHHHHHHh---CCCcEEEecchhcchhHHHHHHHHHhccCceEEeehhhhccC
Confidence 33334444567899999999999999999988763 567899999999999999999999998899999999999999
Q ss_pred CcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCH--HHHHHhhc-cCCCccccc
Q psy3476 495 TIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSE--EQYSLLAE-YSTPEIRRV 570 (1417)
Q Consensus 495 dIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~--~~~~~l~~-~~~pEI~r~ 570 (1417)
|||+|++||+ ||+|...+.++ ||+||+||.| .|.++.|..+ ++|-.|.. ...|++.+.
T Consensus 322 Dip~iD~VvQ--------~DpP~~~~~Fv----------HR~GRTaR~gr~G~Aivfl~p~E~aYveFl~i~~~v~le~~ 383 (567)
T KOG0345|consen 322 DIPGIDLVVQ--------FDPPKDPSSFV----------HRCGRTARAGREGNAIVFLNPREEAYVEFLRIKGKVELERI 383 (567)
T ss_pred CCCCceEEEe--------cCCCCChhHHH----------hhcchhhhccCccceEEEecccHHHHHHHHHhcCccchhhh
Confidence 9999999999 99999888877 9999999999 6887776644 34444433 334666554
|
|
| >KOG0342|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.8e-31 Score=304.60 Aligned_cols=320 Identities=19% Similarity=0.195 Sum_probs=241.4
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc----CC-----CcEEEecchHHHHHHHHHHHHHHHcccc
Q psy3476 38 LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA----GF-----QRIACTQPRRIACISLSKRVAYETLSQY 108 (1417)
Q Consensus 38 lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~----~~-----~~i~~tqPrr~aa~~~a~rva~e~~~~~ 108 (1417)
.-+...|+..+..+..++.+++.|-||||||.++..+..|. .+ -.+++..|||..|+|.+..+-+-+....
T Consensus 103 ~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~ 182 (543)
T KOG0342|consen 103 ETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHE 182 (543)
T ss_pred cchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCC
Confidence 34567788999999999999999999999998755554443 22 2478888999999999874444443444
Q ss_pred CCeEEEEEeecccc------cCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhH
Q psy3476 109 SNLVGYQIRFEKHR------REKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPK 182 (1417)
Q Consensus 109 g~~vGy~ir~e~~~------~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (1417)
+.+||+.|.+.... .....|+++|||.|++++++.
T Consensus 183 ~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt--------------------------------------- 223 (543)
T KOG0342|consen 183 SITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNT--------------------------------------- 223 (543)
T ss_pred CcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcC---------------------------------------
Confidence 78899988776543 236889999999999998764
Q ss_pred HhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCC
Q psy3476 183 RRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPP 262 (1417)
Q Consensus 183 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~ 262 (1417)
++
T Consensus 224 ---------------------------------------------------------------------~~--------- 225 (543)
T KOG0342|consen 224 ---------------------------------------------------------------------SG--------- 225 (543)
T ss_pred ---------------------------------------------------------------------Cc---------
Confidence 00
Q ss_pred CcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHH
Q psy3476 263 LHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVI 342 (1417)
Q Consensus 263 ~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~ll 342 (1417)
....+.+++|+|||| |.++.+|..++.
T Consensus 226 ----------------------------------------------------f~~r~~k~lvlDEAD-rlLd~GF~~di~ 252 (543)
T KOG0342|consen 226 ----------------------------------------------------FLFRNLKCLVLDEAD-RLLDIGFEEDVE 252 (543)
T ss_pred ----------------------------------------------------chhhccceeEeecch-hhhhcccHHHHH
Confidence 123455899999999 999999999999
Q ss_pred HHHhccCCCCcEEEEccCCC--HHHHHHHhc-cCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhh
Q psy3476 343 KCLLHSTAEVKIILMSATIN--IELFHTYFN-RIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKK 419 (1417)
Q Consensus 343 k~l~~~r~~~qvIlmSATln--~~~~~~~f~-~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~ 419 (1417)
+++...+...|..++|||.+ +++++..-. .++..+.+....-+.+..-.+ ..+..... ...+..+...+.+.
T Consensus 253 ~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~---Qgyvv~~~--~~~f~ll~~~LKk~ 327 (543)
T KOG0342|consen 253 QIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLE---QGYVVAPS--DSRFSLLYTFLKKN 327 (543)
T ss_pred HHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhccc---ceEEeccc--cchHHHHHHHHHHh
Confidence 99999999999999999996 344444332 234444433221111111000 00000000 11134455555554
Q ss_pred CCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCe
Q psy3476 420 YPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGI 499 (1417)
Q Consensus 420 ~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V 499 (1417)
.. ..+|+|||+|...+..+++.|+. ..+.|..+||+.++..|..++..|++.+.-||||||+++||+|+|+|
T Consensus 328 ~~---~~KiiVF~sT~~~vk~~~~lL~~-----~dlpv~eiHgk~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V 399 (543)
T KOG0342|consen 328 IK---RYKIIVFFSTCMSVKFHAELLNY-----IDLPVLEIHGKQKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDV 399 (543)
T ss_pred cC---CceEEEEechhhHHHHHHHHHhh-----cCCchhhhhcCCcccccchHHHHHhhcccceEEecchhhccCCCCCc
Confidence 32 37899999999999999999986 57889999999999999999999999999999999999999999999
Q ss_pred EEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHH
Q psy3476 500 RFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSL 558 (1417)
Q Consensus 500 ~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~ 558 (1417)
+.||+ ||+|.+...|+ ||+||+||.| .|..+.+..+++..-
T Consensus 400 ~~VvQ--------~~~P~d~~~YI----------HRvGRTaR~gk~G~alL~l~p~El~F 441 (543)
T KOG0342|consen 400 DWVVQ--------YDPPSDPEQYI----------HRVGRTAREGKEGKALLLLAPWELGF 441 (543)
T ss_pred eEEEE--------eCCCCCHHHHH----------HHhccccccCCCceEEEEeChhHHHH
Confidence 99999 99999877777 9999999998 799999988877643
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=300.27 Aligned_cols=328 Identities=22% Similarity=0.269 Sum_probs=231.4
Q ss_pred cccchhhhhhccccccccccccCCCCccEEEEecCc--ccccCcchHHHHHHHHhccCCCCcEEEEccCC-CHHHHHHHh
Q psy3476 294 GDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIH--ERHLHGDFLLGVIKCLLHSTAEVKIILMSATI-NIELFHTYF 370 (1417)
Q Consensus 294 ~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaH--ER~l~~d~ll~llk~l~~~r~~~qvIlmSATl-n~~~~~~~f 370 (1417)
+|++|||-+-+++.-.. ...+.++++|||||+| +..-.+.-+.+++.++....++.|+|.+|||+ |++.+++.+
T Consensus 316 ADIIVGTYEGiD~lLRt---g~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp~elA~~l 392 (830)
T COG1202 316 ADIIVGTYEGIDYLLRT---GKDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLRYLFPGAQFIYLSATVGNPEELAKKL 392 (830)
T ss_pred CcEEEeechhHHHHHHc---CCcccccceEEeeeeeeccchhcccchhhHHHHHHHhCCCCeEEEEEeecCChHHHHHHh
Confidence 45566666655543222 1678899999999999 11122345678888888888999999999999 999999999
Q ss_pred ccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhh----CCCCCCCcEEEEeCCHHHHHHHHHHHH
Q psy3476 371 NRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKK----YPRTERGDVLIFMSGISEISSIVRAAQ 446 (1417)
Q Consensus 371 ~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~----~~~~~~g~iLVFl~~~~eie~la~~L~ 446 (1417)
++..+..+.|++|++-|..-...... ....+..++... ....-.|++|||.+++..|..+++.|.
T Consensus 393 --~a~lV~y~~RPVplErHlvf~~~e~e---------K~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~ 461 (830)
T COG1202 393 --GAKLVLYDERPVPLERHLVFARNESE---------KWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALT 461 (830)
T ss_pred --CCeeEeecCCCCChhHeeeeecCchH---------HHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhh
Confidence 68899999999998866543221110 011122222222 223457999999999999999999998
Q ss_pred hhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceee
Q psy3476 447 EYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFW 526 (1417)
Q Consensus 447 ~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ 526 (1417)
. .++.+.|+|+||+..+|..++..|.++.+.++|+|..++.|||+|+-.+|..| -.....|
T Consensus 462 ~-----kG~~a~pYHaGL~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEs--------------LaMG~~W 522 (830)
T COG1202 462 G-----KGLKAAPYHAGLPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFES--------------LAMGIEW 522 (830)
T ss_pred c-----CCcccccccCCCcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHH--------------HHccccc
Confidence 7 68999999999999999999999999999999999999999999987776652 1234579
Q ss_pred cCHhhHHhhcCcCCCCC---CCeEEEecCHH-HHH----------Hhh-ccCCCccccc------ChHHHHHHHHhhCCC
Q psy3476 527 ISKASAEQRKGRAGRTG---PGVCYRLYSEE-QYS----------LLA-EYSTPEIRRV------SIDSLLLSLVCMGLG 585 (1417)
Q Consensus 527 ISkasa~QR~GRAGR~g---~G~cy~L~t~~-~~~----------~l~-~~~~pEI~r~------~L~~~lL~lk~lgi~ 585 (1417)
+|..++.||.|||||++ .|++|.+..+. .|+ .+. -...||...+ ..++ +|. +.++.
T Consensus 523 Ls~~EF~QM~GRAGRp~yHdrGkVyllvepg~~Y~~~m~~TEdevA~kLL~s~~e~V~vey~ee~e~e~-vLA--~~~v~ 599 (830)
T COG1202 523 LSVREFQQMLGRAGRPDYHDRGKVYLLVEPGKKYHASMEETEDEVAFKLLESEPEPVIVEYDEEDEEEN-VLA--SAGVT 599 (830)
T ss_pred CCHHHHHHHhcccCCCCcccCceEEEEecCChhhcccccccHHHHHHHHhcCCCCcceeccCcHHHHHH-HHH--Hhhhc
Confidence 99999999999999998 69999886432 111 111 1122322221 2222 222 22222
Q ss_pred CCc----CCCCCCCCCcchhHHHHHHHHhcCCCCCCC---CcChhhhhccCCCCChhhHHHHHhhhccCChhhHHHHhhh
Q psy3476 586 DVR----KFPFLEAPPAENIESSVRSLTQHGAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAV 658 (1417)
Q Consensus 586 ~~~----~f~~l~pP~~~~l~~Al~~L~~lGaId~~~---~lT~LG~~ls~lpldp~lak~Ll~~~~f~cle~vl~IaA~ 658 (1417)
+.. ..+-..--..-..+.++..|++.|+|+.+| ++|+.|++++...+.|..|-.|..++ ....+| +.|++.
T Consensus 600 ~s~~~i~~v~~~~~g~~~~~~k~l~~Lee~g~i~~~G~~v~~T~yGrava~~Fl~p~~a~~Ir~~v-~~~~~p-l~i~~~ 677 (830)
T COG1202 600 NSLSVIERVNSLMLGAAFDPKKALSKLEEYGMIKKKGNIVRPTPYGRAVAMSFLGPSEAEFIREGV-LASMDP-LRIAAE 677 (830)
T ss_pred CcHHHHhhcChhhccccCCHHHHHHHHHhcCCeeccCCEeeeccccceeEEeecCchHHHHHHHhh-hccCCh-HhHhhc
Confidence 111 111000011234678999999999999876 59999999999999999999988875 333344 445555
Q ss_pred c
Q psy3476 659 L 659 (1417)
Q Consensus 659 L 659 (1417)
|
T Consensus 678 l 678 (830)
T COG1202 678 L 678 (830)
T ss_pred c
Confidence 4
|
|
| >KOG0920|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-33 Score=352.12 Aligned_cols=358 Identities=23% Similarity=0.386 Sum_probs=292.7
Q ss_pred hhhhHHHhhhccccccCCCcccccccHHHHhhhhc-CCccchhhcchHHHHHHHHHhcCCCcccC--CCCCCCCccchHH
Q psy3476 795 EEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAE-YSTPEIRRVSIDSLLLSLVCMGLGDVRKF--PFLEAPPAENIES 871 (1417)
Q Consensus 795 ~s~~~~~qR~~~agR~~pG~CyRLyt~~~~~~l~~-~~~PEI~r~~L~~~vL~lk~~g~~~~~~f--~~l~~P~~~~l~~ 871 (1417)
+|+.+|+||+|||||+++|+|||||++..|+.+.+ +++|||+|++|.++||++|.++.+++..| ..+|||+..++..
T Consensus 517 vSkAna~QR~GRAGRv~~G~cy~L~~~~~~~~~~~~~q~PEilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~ 596 (924)
T KOG0920|consen 517 VSKANAKQRRGRAGRVRPGICYHLYTRSRYEKLMLAYQLPEILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDL 596 (924)
T ss_pred ccccchHHhcccccCccCCeeEEeechhhhhhcccccCChHHHhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHH
Confidence 78999999999999999999999999999998777 99999999999999999999999999887 7889999999999
Q ss_pred HHHHHhhccccccccccchhhhhcccCCCCccccchhhhcccccchhhHHHHHHhhccccccchhhhcccccccCCCCcc
Q psy3476 872 SVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVTSLGRFLSDLPVD 951 (1417)
Q Consensus 872 A~~~L~~lgald~~~~lT~lG~~l~~lPvdp~lak~Ll~~~~~~cl~~~l~i~a~ls~~~~~~~~~~~~~~~~~~~~~f~ 951 (1417)
|+..|..+||||+++.||++|+.++.||+||++|||++.|+.|+|+|++++|||+|+..+++..+..+...+++++..|.
T Consensus 597 a~~~L~~igaL~~~e~LT~LG~~la~lPvd~~igK~ll~g~if~cLdp~l~iaa~Ls~k~PF~~~~~~~~~~~~~~~~~~ 676 (924)
T KOG0920|consen 597 AIERLKQIGALDESEELTPLGLHLASLPVDVRIGKLLLFGAIFGCLDPALTIAAALSFKSPFVSPLGKREEADKAKKLLA 676 (924)
T ss_pred HHHHHHHhccccCcccchHHHHHHHhCCCccccchhheehhhccccchhhhHHHHhccCCCcccCCCchhHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888777766
Q ss_pred CCC-CCccccccccccc----------hhhHHHHhhhhccccchhhhhhh-ccccccCCCcccccccccccccccchhhH
Q psy3476 952 IPL-GKMLVFGSMFHQI----------DTMLLLDLALNFGAIDSKERVTS-LGRFLSDLPVDIPLGKMLVFGSMFHQIDT 1019 (1417)
Q Consensus 952 ~~~-gd~lt~l~~~~~~----------~~~~c~~~~l~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1019 (1417)
... ||||+++++|++| ...||.+|||+..+|++-+..+. +...+.+.++-=.+..
T Consensus 677 ~~~~SD~la~~~ay~~w~~~~~~~~~~~~~fc~~~fLs~~~l~~i~~l~~q~~~~l~~~g~~~~~~~------------- 743 (924)
T KOG0920|consen 677 LDSISDHLAVVRAYAGWREILRSGPSAEKDFCEENFLSSNTLQEISSLRVQFLELLSDIGLIPISST------------- 743 (924)
T ss_pred cCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhcccccCCcc-------------
Confidence 555 9999999999999 27899999999999999998888 7755555544221110
Q ss_pred HHHHHHhhhcCccccccccccccccccCCCCccccchhhhcccccccchhHHHHHhhhhccCCchhhHHHHHhhhcccch
Q psy3476 1020 MLLLDLALNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFVHHSEEEEEEEAGERLESMD 1099 (1417)
Q Consensus 1020 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~~~~gk~~~~g~~f~~~d~~~~~~~~l~f~~~~~~~~~~~~~~r~~~~~ 1099 (1417)
.+
T Consensus 744 ---------------------------------------------------------------~~--------------- 745 (924)
T KOG0920|consen 744 ---------------------------------------------------------------AA--------------- 745 (924)
T ss_pred ---------------------------------------------------------------cc---------------
Confidence 00
Q ss_pred hhHHHHHhcCChhhHHhhcccccccchHHHHHHHhhhccccchhHHHHHHhhccchhhhHhhhhccccccchhhhccccc
Q psy3476 1100 ANEVEFRLKHDPKQVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIA 1179 (1417)
Q Consensus 1100 ~~~~~~~~~~~g~~l~~~~~~~ls~~t~~iide~her~~~~d~ll~~l~~~~~~~~~lk~ilmsat~~~~~f~~yf~~~~ 1179 (1417)
T Consensus 746 -------------------------------------------------------------------------------- 745 (924)
T KOG0920|consen 746 -------------------------------------------------------------------------------- 745 (924)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccCCcchHHHHHHHHHhCCCCcccccCcCCcccccccccccccCCCeEEeCCCCcCCCCCcccccccCCCCCC
Q psy3476 1180 KDLLSGSTARSHKDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLRISEDDIVDP 1259 (1417)
Q Consensus 1180 ~~~~~~~~~~~~~~~~l~~~iL~~glyP~~a~~d~~n~~~~~~~~~~~t~~k~~v~lhP~s~~~~~~~~l~~~~~~~~~~ 1259 (1417)
......+.+..+..+++++||+|+|||++..+. ...+.++--|.|++.+.|.+||+|++.+...+
T Consensus 746 --~~~~~~n~~s~~~~~iravl~a~lyP~i~~~~~--~~~~~~~~~~~~~~~~~v~i~~~sv~~~~~~~----------- 810 (924)
T KOG0920|consen 746 --LTDSECNHNSQNPELVRAVLCAGLYPNIAFVRR--MEPKSKSVTFVTKADGRVIIHPSSVNEQSTGF----------- 810 (924)
T ss_pred --cCchhhhhcCCCHHHHHHHHhccCCCceeeeec--ccCCcCcceeecCCceeEEEecchhhcccccc-----------
Confidence 000011235788999999999999999999776 33344666778888889999999998876622
Q ss_pred CCCCCCCCCCccccchhHHHHHHHHhccc-hhhhcccccchHHHHhhccceee-ecCCeeEE---EecceEEecccCccc
Q psy3476 1260 PPGLKLPGRNVISSKHQLLVYMSLLETSK-PFLVNCLRMPALQTLLLFSSAIH-TNSDFTRL---VFDSWIEVFVPLQEA 1334 (1417)
Q Consensus 1260 ~~~~~~~~~~~~s~~hq~~~~~~~leT~k-~yl~~~~~~~~~~~lll~~~~i~-~~~~~~~~---~~d~wl~~~~~~~~~ 1334 (1417)
. .+ +++|.++++|++ +|+++|+.+|+++ +|||++.+. +...-.++ +.|+|+.+..+...+
T Consensus 811 ~------------~p--~l~~~~k~~t~~~~~~rd~T~v~~~~-~llfgg~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 875 (924)
T KOG0920|consen 811 Q------------SP--FLVFPEKVKSTRLVSLRDTTSVSSSA-LLLFGGGISTVRMKSGSLALLLPDGWLRFKALPKTA 875 (924)
T ss_pred C------------Cc--ceEEeeecccCCcceeeecCCCCcHH-heeecCCceeecCCCCccceecCCceEEeecchhHH
Confidence 1 11 458999999999 9999999999999 888999754 33333333 349999999884443
Q ss_pred ccccchhhhHHHHHHHHHHhhc
Q psy3476 1335 KSTADVNQLEHSLTRDLVQFMS 1356 (1417)
Q Consensus 1335 ~~~~~~~~~~~~l~~~l~~~~~ 1356 (1417)
.....+ ++.|-+-+.+++.
T Consensus 876 ~~~~~L---r~~l~~~l~~~~~ 894 (924)
T KOG0920|consen 876 RLLKEL---RRELDSLLSKKIR 894 (924)
T ss_pred HHHHHH---HHHHHHHHHHhcc
Confidence 332222 3344444444443
|
|
| >KOG0333|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.7e-30 Score=300.12 Aligned_cols=203 Identities=23% Similarity=0.401 Sum_probs=160.6
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccCC-------------------------CCcEEEEccCCC--HH-HHHH
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTA-------------------------EVKIILMSATIN--IE-LFHT 368 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~-------------------------~~qvIlmSATln--~~-~~~~ 368 (1417)
+++..+||+|||+ |+++.+|...+.+++..++. -.|.+.||||++ ++ ....
T Consensus 394 l~qctyvvldead-rmiDmgfE~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ 472 (673)
T KOG0333|consen 394 LNQCTYVVLDEAD-RMIDMGFEPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARS 472 (673)
T ss_pred hccCceEeccchh-hhhcccccHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHH
Confidence 5678899999999 99999999999988876541 168999999995 34 4456
Q ss_pred HhccCceEEEeC--CcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHH
Q psy3476 369 YFNRIAKIIKVP--GRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQ 446 (1417)
Q Consensus 369 ~f~~~~~vi~v~--gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~ 446 (1417)
|| ..+.++++. |++.|.-.........+ ....++.+.+.+. ...++|||+|+++.|+.+|+.|.
T Consensus 473 yl-r~pv~vtig~~gk~~~rveQ~v~m~~ed---------~k~kkL~eil~~~----~~ppiIIFvN~kk~~d~lAk~Le 538 (673)
T KOG0333|consen 473 YL-RRPVVVTIGSAGKPTPRVEQKVEMVSED---------EKRKKLIEILESN----FDPPIIIFVNTKKGADALAKILE 538 (673)
T ss_pred Hh-hCCeEEEeccCCCCccchheEEEEecch---------HHHHHHHHHHHhC----CCCCEEEEEechhhHHHHHHHHh
Confidence 77 556666654 44444321111111110 1133444444432 35689999999999999999998
Q ss_pred hhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceee
Q psy3476 447 EYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFW 526 (1417)
Q Consensus 447 ~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ 526 (1417)
+ .++.+..|||+-++++|..+++.|++|...|+||||+|++|||||+|.+||| ||....+..|.
T Consensus 539 K-----~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVin--------ydmaksieDYt--- 602 (673)
T KOG0333|consen 539 K-----AGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVIN--------YDMAKSIEDYT--- 602 (673)
T ss_pred h-----ccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeee--------cchhhhHHHHH---
Confidence 8 6799999999999999999999999999999999999999999999999999 99998877777
Q ss_pred cCHhhHHhhcCcCCCCC-CCeEEEecCHHHHH
Q psy3476 527 ISKASAEQRKGRAGRTG-PGVCYRLYSEEQYS 557 (1417)
Q Consensus 527 ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~ 557 (1417)
||+||+||.| .|.++.|+++++-.
T Consensus 603 -------HRIGRTgRAGk~GtaiSflt~~dt~ 627 (673)
T KOG0333|consen 603 -------HRIGRTGRAGKSGTAISFLTPADTA 627 (673)
T ss_pred -------HHhccccccccCceeEEEeccchhH
Confidence 9999999999 79999999998844
|
|
| >KOG0343|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-30 Score=298.52 Aligned_cols=317 Identities=18% Similarity=0.209 Sum_probs=242.8
Q ss_pred cCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc----CCC-----cEEEecchHHHHHHHHHHHHHHHcc
Q psy3476 36 NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA----GFQ-----RIACTQPRRIACISLSKRVAYETLS 106 (1417)
Q Consensus 36 ~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~----~~~-----~i~~tqPrr~aa~~~a~rva~e~~~ 106 (1417)
.-.-+...|...|..-..++.++-.|.||||||.++.-+++|. .+. -.+|..|+|.+|+|+..-+.+ .|.
T Consensus 88 ~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~k-vgk 166 (758)
T KOG0343|consen 88 KFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNK-VGK 166 (758)
T ss_pred CCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHH-Hhh
Confidence 3345567888888888889999999999999998866666653 332 256667888888887654322 222
Q ss_pred ccCCeEEEEEeec-----ccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhh
Q psy3476 107 QYSNLVGYQIRFE-----KHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAP 181 (1417)
Q Consensus 107 ~~g~~vGy~ir~e-----~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (1417)
.-+-..|..|.+. ...-.+..|++||||.||++|...
T Consensus 167 ~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde~-------------------------------------- 208 (758)
T KOG0343|consen 167 HHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDEN-------------------------------------- 208 (758)
T ss_pred ccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhhc--------------------------------------
Confidence 2233455555433 233356789999999999987432
Q ss_pred HHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCC
Q psy3476 182 KRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISP 261 (1417)
Q Consensus 182 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~ 261 (1417)
|
T Consensus 209 -----------------------------------------~-------------------------------------- 209 (758)
T KOG0343|consen 209 -----------------------------------------P-------------------------------------- 209 (758)
T ss_pred -----------------------------------------C--------------------------------------
Confidence 0
Q ss_pred CCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHH
Q psy3476 262 PLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGV 341 (1417)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~l 341 (1417)
. ..-+++.++|+|||| |.++++|...+
T Consensus 210 ~----------------------------------------------------f~t~~lQmLvLDEAD-R~LDMGFk~tL 236 (758)
T KOG0343|consen 210 N----------------------------------------------------FSTSNLQMLVLDEAD-RMLDMGFKKTL 236 (758)
T ss_pred C----------------------------------------------------CCCCcceEEEeccHH-HHHHHhHHHHH
Confidence 0 123467899999999 99999999999
Q ss_pred HHHHhccCCCCcEEEEccCC--CHHHHHHHhccCceEEEeCCc---cccee--EEeccccccccccccCCCCChHHHHHH
Q psy3476 342 IKCLLHSTAEVKIILMSATI--NIELFHTYFNRIAKIIKVPGR---LYPIQ--LEYHPIVELDRTKSEKLDPGPYIRILS 414 (1417)
Q Consensus 342 lk~l~~~r~~~qvIlmSATl--n~~~~~~~f~~~~~vi~v~gr---~~pv~--v~~~~~~~~~~~~~~~~~~~~~~~il~ 414 (1417)
-.++..+++..|.++||||- ++.+++..--.++..|.+-.. .+|-. ..|.- .+....+.
T Consensus 237 ~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~--------------v~l~~Ki~ 302 (758)
T KOG0343|consen 237 NAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVI--------------VPLEDKID 302 (758)
T ss_pred HHHHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEE--------------EehhhHHH
Confidence 99999999999999999999 577888775455655554311 12221 11211 12334556
Q ss_pred HHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccC
Q psy3476 415 IIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSI 494 (1417)
Q Consensus 415 ~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GI 494 (1417)
.+...+.+....++|||++|++++..+++.+.++. +++.+..|||+|++..|..++..|-..+--|++||++++||+
T Consensus 303 ~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlr---pg~~l~~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGL 379 (758)
T KOG0343|consen 303 MLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLR---PGIPLLALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGL 379 (758)
T ss_pred HHHHHHHhccccceEEEEehhhHHHHHHHHHHhcC---CCCceeeeccchhHHHHHHHHHHHHHhcceEEEeehhhhccC
Confidence 66666655667899999999999999999998754 789999999999999999999999988889999999999999
Q ss_pred CcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHH
Q psy3476 495 TIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSL 558 (1417)
Q Consensus 495 dIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~ 558 (1417)
|+|.|++||. ||.|.++.+|+ ||+||+.|.. .|.|+.+.++++.+.
T Consensus 380 DFpaVdwViQ--------~DCPedv~tYI----------HRvGRtAR~~~~G~sll~L~psEeE~ 426 (758)
T KOG0343|consen 380 DFPAVDWVIQ--------VDCPEDVDTYI----------HRVGRTARYKERGESLLMLTPSEEEA 426 (758)
T ss_pred CCcccceEEE--------ecCchhHHHHH----------HHhhhhhcccCCCceEEEEcchhHHH
Confidence 9999999999 99999888888 9999999998 799999988877554
|
|
| >KOG0340|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-29 Score=282.69 Aligned_cols=317 Identities=20% Similarity=0.228 Sum_probs=232.3
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC----Cc-EEEecchHHHHHHHHHHHHHHHccccCCeEEEEE
Q psy3476 42 QYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF----QR-IACTQPRRIACISLSKRVAYETLSQYSNLVGYQI 116 (1417)
Q Consensus 42 ~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~----~~-i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy~i 116 (1417)
+.|+..+..|.+++++|-+|.||||||+.+..++++... .. -++.-|+|..|.++++++..- |...+..+-..+
T Consensus 32 piQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~al-Gk~l~lK~~viv 110 (442)
T KOG0340|consen 32 PIQQACIPKILEGRDCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIAL-GKLLNLKVSVIV 110 (442)
T ss_pred chHhhhhHHHhcccccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHh-cccccceEEEEE
Confidence 348999999999999999999999999999988887543 21 456678999999999988653 444555555545
Q ss_pred eeccc------ccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhccc
Q psy3476 117 RFEKH------RREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKAD 190 (1417)
Q Consensus 117 r~e~~------~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 190 (1417)
.+.+. .+++..++++|+|.+-..+.++.
T Consensus 111 GG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~---------------------------------------------- 144 (442)
T KOG0340|consen 111 GGTDMIMQAAILSDRPHVVVATPGRLADHLSSNL---------------------------------------------- 144 (442)
T ss_pred ccHHHhhhhhhcccCCCeEecCccccccccccCC----------------------------------------------
Confidence 55443 34567788888887776654430
Q ss_pred cchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCccc
Q psy3476 191 NAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIV 270 (1417)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~~ 270 (1417)
| .
T Consensus 145 --------------------------------------------------------------~----~------------ 146 (442)
T KOG0340|consen 145 --------------------------------------------------------------G----V------------ 146 (442)
T ss_pred --------------------------------------------------------------c----c------------
Confidence 0 0
Q ss_pred cccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhccCC
Q psy3476 271 AADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTA 350 (1417)
Q Consensus 271 ~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~ 350 (1417)
....+.++.++|+|||| |.+.++|-..+.-+....+.
T Consensus 147 ------------------------------------------~~~~~~rlkflVlDEAD-rvL~~~f~d~L~~i~e~lP~ 183 (442)
T KOG0340|consen 147 ------------------------------------------CSWIFQRLKFLVLDEAD-RVLAGCFPDILEGIEECLPK 183 (442)
T ss_pred ------------------------------------------chhhhhceeeEEecchh-hhhccchhhHHhhhhccCCC
Confidence 00346788999999999 99999998888888888888
Q ss_pred CCcEEEEccCCCHHHHHHHhcc--C---ceEEEe-CCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCC
Q psy3476 351 EVKIILMSATINIELFHTYFNR--I---AKIIKV-PGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTE 424 (1417)
Q Consensus 351 ~~qvIlmSATln~~~~~~~f~~--~---~~vi~v-~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~ 424 (1417)
..|..++|||++. .+...++- . +..... ++-..+-.+...........+ -.-.+..+ ..+...+
T Consensus 184 ~RQtLlfSATitd-~i~ql~~~~i~k~~a~~~e~~~~vstvetL~q~yI~~~~~vk--------daYLv~~L-r~~~~~~ 253 (442)
T KOG0340|consen 184 PRQTLLFSATITD-TIKQLFGCPITKSIAFELEVIDGVSTVETLYQGYILVSIDVK--------DAYLVHLL-RDFENKE 253 (442)
T ss_pred ccceEEEEeehhh-HHHHhhcCCcccccceEEeccCCCCchhhhhhheeecchhhh--------HHHHHHHH-hhhhhcc
Confidence 8899999999952 23333311 0 111111 111111111000000000000 01122222 3343346
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEc
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVD 504 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VId 504 (1417)
.+.++||+++..+++.++..|+. -++.+..+||.|++.+|...+.+|+++..+||||||+|++|+|||.|..|||
T Consensus 254 ~~simIFvnttr~cQ~l~~~l~~-----le~r~~~lHs~m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN 328 (442)
T KOG0340|consen 254 NGSIMIFVNTTRECQLLSMTLKN-----LEVRVVSLHSQMPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVN 328 (442)
T ss_pred CceEEEEeehhHHHHHHHHHHhh-----hceeeeehhhcchHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEe
Confidence 89999999999999999999987 5789999999999999999999999999999999999999999999999999
Q ss_pred CCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHHh
Q psy3476 505 SGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLL 559 (1417)
Q Consensus 505 sG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~l 559 (1417)
||.|.....|+ ||+||+.|.| .|.++.++++.+.+.+
T Consensus 329 --------~diPr~P~~yi----------HRvGRtARAGR~G~aiSivt~rDv~l~ 366 (442)
T KOG0340|consen 329 --------HDIPRDPKDYI----------HRVGRTARAGRKGMAISIVTQRDVELL 366 (442)
T ss_pred --------cCCCCCHHHHH----------HhhcchhcccCCcceEEEechhhHHHH
Confidence 99999888888 9999999999 6999999998776543
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-29 Score=321.11 Aligned_cols=215 Identities=19% Similarity=0.169 Sum_probs=142.2
Q ss_pred CCCCccEEEEecCcccccCcchHH---HHHHHHhc----cCCCCcEEEEccCC-CHHHHHHHhccCc-eEEEeCCcccc-
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLL---GVIKCLLH----STAEVKIILMSATI-NIELFHTYFNRIA-KIIKVPGRLYP- 385 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll---~llk~l~~----~r~~~qvIlmSATl-n~~~~~~~f~~~~-~vi~v~gr~~p- 385 (1417)
.++++++|||||+|. .. +.|.. .+++++.+ ...+.|+|++|||+ |...+.+++.+.. .++..++.+.+
T Consensus 154 ~l~~l~~vViDEah~-~~-g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~~~~~~~~~ 231 (742)
T TIGR03817 154 FLRRLRYVVIDECHS-YR-GVFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVAVTEDGSPRGA 231 (742)
T ss_pred HHhcCCEEEEeChhh-cc-CccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEECCCCCCcCc
Confidence 367899999999993 32 22332 23333322 24578999999999 5555665553322 22222222222
Q ss_pred eeEEe-cccccc-ccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhc---cCCcEEEEe
Q psy3476 386 IQLEY-HPIVEL-DRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEK---SQGWIVLPL 460 (1417)
Q Consensus 386 v~v~~-~~~~~~-~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~---~~~~~V~~L 460 (1417)
....+ .+.... ...................+...+. .+.++||||+|++.++.++..+++.... ..+..+..+
T Consensus 232 ~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~--~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~ 309 (742)
T TIGR03817 232 RTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVA--EGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAY 309 (742)
T ss_pred eEEEEecCCccccccccccccccchHHHHHHHHHHHHH--CCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhhe
Confidence 12211 221100 0000000001112223333433332 2578999999999999999998764321 124578899
Q ss_pred cCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCC
Q psy3476 461 HSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAG 540 (1417)
Q Consensus 461 Hs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAG 540 (1417)
||++++++|.++++.|++|+.++|||||++|+|||||++++||+ |+.|.+ .++|+||+||||
T Consensus 310 hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~--------~~~P~s----------~~~y~qRiGRaG 371 (742)
T TIGR03817 310 RAGYLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVI--------AGFPGT----------RASLWQQAGRAG 371 (742)
T ss_pred ecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEE--------eCCCCC----------HHHHHHhccccC
Confidence 99999999999999999999999999999999999999999999 777764 455669999999
Q ss_pred CCC-CCeEEEecC
Q psy3476 541 RTG-PGVCYRLYS 552 (1417)
Q Consensus 541 R~g-~G~cy~L~t 552 (1417)
|.| .|.++.+.+
T Consensus 372 R~G~~g~ai~v~~ 384 (742)
T TIGR03817 372 RRGQGALVVLVAR 384 (742)
T ss_pred CCCCCcEEEEEeC
Confidence 999 699998886
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >KOG0338|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=291.88 Aligned_cols=310 Identities=22% Similarity=0.269 Sum_probs=228.7
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC--------CcEEEecchHHHHHHHHH---HHHHHHccccCC
Q psy3476 42 QYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF--------QRIACTQPRRIACISLSK---RVAYETLSQYSN 110 (1417)
Q Consensus 42 ~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~--------~~i~~tqPrr~aa~~~a~---rva~e~~~~~g~ 110 (1417)
+.|...+..-.-++.++-||.||||||..+..+++|.-. .|++|..|+|.+|+|+.. ++|.... -
T Consensus 206 pIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt~----I 281 (691)
T KOG0338|consen 206 PIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFTD----I 281 (691)
T ss_pred chhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhcc----c
Confidence 347777777778899999999999999999999988532 479999999999998764 4444433 4
Q ss_pred eEEEEEeecc------cccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHh
Q psy3476 111 LVGYQIRFEK------HRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRR 184 (1417)
Q Consensus 111 ~vGy~ir~e~------~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (1417)
.||..|.+-+ .......|+++|||.|.+++.+.
T Consensus 282 ~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs----------------------------------------- 320 (691)
T KOG0338|consen 282 TVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNS----------------------------------------- 320 (691)
T ss_pred eeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccC-----------------------------------------
Confidence 5555554322 23456889999999988776442
Q ss_pred hhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCc
Q psy3476 185 KMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLH 264 (1417)
Q Consensus 185 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~ 264 (1417)
|+
T Consensus 321 --------------------------------------~s---------------------------------------- 322 (691)
T KOG0338|consen 321 --------------------------------------PS---------------------------------------- 322 (691)
T ss_pred --------------------------------------CC----------------------------------------
Confidence 10
Q ss_pred CCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHH
Q psy3476 265 CGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKC 344 (1417)
Q Consensus 265 ~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~ 344 (1417)
..++++.++|+|||| |+++.+|...+-.+
T Consensus 323 --------------------------------------------------f~ldsiEVLvlDEAD-RMLeegFademnEi 351 (691)
T KOG0338|consen 323 --------------------------------------------------FNLDSIEVLVLDEAD-RMLEEGFADEMNEI 351 (691)
T ss_pred --------------------------------------------------ccccceeEEEechHH-HHHHHHHHHHHHHH
Confidence 357788999999999 99999999998888
Q ss_pred HhccCCCCcEEEEccCCC--HHHHHHHhccCceEEEeC-Ccccce--eEEeccccccccccccCCCCChHHHHHHHHHhh
Q psy3476 345 LLHSTAEVKIILMSATIN--IELFHTYFNRIAKIIKVP-GRLYPI--QLEYHPIVELDRTKSEKLDPGPYIRILSIIDKK 419 (1417)
Q Consensus 345 l~~~r~~~qvIlmSATln--~~~~~~~f~~~~~vi~v~-gr~~pv--~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~ 419 (1417)
+...+.+.|.++|||||+ ++++.+.--+.+.-|.++ ....+. ...|...-. ..+ .+. ..-+...+.+.
T Consensus 352 i~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRIR~----~re-~dR--ea~l~~l~~rt 424 (691)
T KOG0338|consen 352 IRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRIRP----KRE-GDR--EAMLASLITRT 424 (691)
T ss_pred HHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHheecc----ccc-ccc--HHHHHHHHHHh
Confidence 888889999999999995 556655432322222222 111111 111111000 000 001 11123333333
Q ss_pred CCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCe
Q psy3476 420 YPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGI 499 (1417)
Q Consensus 420 ~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V 499 (1417)
+ ...++||+.|++.+..+.-.+-- .++.+.-+||.|++++|...++.|+++++.|||||++|++|+||++|
T Consensus 425 f----~~~~ivFv~tKk~AHRl~IllGL-----lgl~agElHGsLtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV 495 (691)
T KOG0338|consen 425 F----QDRTIVFVRTKKQAHRLRILLGL-----LGLKAGELHGSLTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGV 495 (691)
T ss_pred c----ccceEEEEehHHHHHHHHHHHHH-----hhchhhhhcccccHHHHHHHHHHHHhccCCEEEEechhhccCCccce
Confidence 3 46799999999999988666543 57889999999999999999999999999999999999999999999
Q ss_pred EEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHHh
Q psy3476 500 RFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLL 559 (1417)
Q Consensus 500 ~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~l 559 (1417)
..||| |+.|..+..|+ ||+||+.|.| .|..+.|..+++-..+
T Consensus 496 ~tVIN--------y~mP~t~e~Y~----------HRVGRTARAGRaGrsVtlvgE~dRkll 538 (691)
T KOG0338|consen 496 QTVIN--------YAMPKTIEHYL----------HRVGRTARAGRAGRSVTLVGESDRKLL 538 (691)
T ss_pred eEEEe--------ccCchhHHHHH----------HHhhhhhhcccCcceEEEeccccHHHH
Confidence 99999 88887766666 9999999999 7999999998866544
|
|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-28 Score=304.13 Aligned_cols=209 Identities=22% Similarity=0.278 Sum_probs=149.4
Q ss_pred CCCCccEEEEecCcccccCc-chHHHHH--HHHhccCCCCcEEEEccCCCHH---HHHHHhccCceEEEeCCcccceeEE
Q psy3476 316 FLSSYDVLVLDEIHERHLHG-DFLLGVI--KCLLHSTAEVKIILMSATINIE---LFHTYFNRIAKIIKVPGRLYPIQLE 389 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~-d~ll~ll--k~l~~~r~~~qvIlmSATln~~---~~~~~f~~~~~vi~v~gr~~pv~v~ 389 (1417)
...++++|||||||....++ +|...+. ..+....++.+++++|||++.. ++.+++.-..+.+.......| .+.
T Consensus 124 ~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~r~-nl~ 202 (470)
T TIGR00614 124 ERKGITLIAVDEAHCISQWGHDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFDRP-NLY 202 (470)
T ss_pred hcCCcCEEEEeCCcccCccccccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCCCC-CcE
Confidence 35678999999999543332 4554442 2344455789999999999754 455555322222222211111 111
Q ss_pred eccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHH
Q psy3476 390 YHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQ 469 (1417)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR 469 (1417)
|..... .......+...+.+. .++..+||||+++++++.+++.|.+ .++.+..+||+|++++|
T Consensus 203 ~~v~~~---------~~~~~~~l~~~l~~~---~~~~~~IIF~~s~~~~e~la~~L~~-----~g~~~~~~H~~l~~~eR 265 (470)
T TIGR00614 203 YEVRRK---------TPKILEDLLRFIRKE---FKGKSGIIYCPSRKKSEQVTASLQN-----LGIAAGAYHAGLEISAR 265 (470)
T ss_pred EEEEeC---------CccHHHHHHHHHHHh---cCCCceEEEECcHHHHHHHHHHHHh-----cCCCeeEeeCCCCHHHH
Confidence 111000 011233444444432 2345679999999999999999987 57889999999999999
Q ss_pred HHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEE
Q psy3476 470 DRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCY 548 (1417)
Q Consensus 470 ~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy 548 (1417)
..+++.|++|+.+|||||+++++|||+|+|++||+ |+.|.+... |.||+|||||.| +|.|+
T Consensus 266 ~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~--------~~~P~s~~~----------y~Qr~GRaGR~G~~~~~~ 327 (470)
T TIGR00614 266 DDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIH--------YSLPKSMES----------YYQESGRAGRDGLPSECH 327 (470)
T ss_pred HHHHHHHHcCCCcEEEEechhhccCCcccceEEEE--------eCCCCCHHH----------HHhhhcCcCCCCCCceEE
Confidence 99999999999999999999999999999999999 888875544 559999999999 89999
Q ss_pred EecCHHHHHHhh
Q psy3476 549 RLYSEEQYSLLA 560 (1417)
Q Consensus 549 ~L~t~~~~~~l~ 560 (1417)
.+|+..+...+.
T Consensus 328 ~~~~~~d~~~~~ 339 (470)
T TIGR00614 328 LFYAPADINRLR 339 (470)
T ss_pred EEechhHHHHHH
Confidence 999998876544
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0328|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-29 Score=271.02 Aligned_cols=207 Identities=19% Similarity=0.304 Sum_probs=165.0
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHH--HHHHHhccCceEEEeCCcccce---eEEec
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIE--LFHTYFNRIAKIIKVPGRLYPI---QLEYH 391 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~--~~~~~f~~~~~vi~v~gr~~pv---~v~~~ 391 (1417)
-..++++|+||+|| +++.+|...+......++++.|++++|||++.+ ...+.|..++.-+.+.....+. +.+|.
T Consensus 167 tr~vkmlVLDEaDe-mL~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v 245 (400)
T KOG0328|consen 167 TRAVKMLVLDEADE-MLNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFV 245 (400)
T ss_pred ccceeEEEeccHHH-HHHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhhee
Confidence 34688999999995 566688899999999999999999999999755 4456665544444443322222 22332
Q ss_pred cccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHH
Q psy3476 392 PIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDR 471 (1417)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~ 471 (1417)
....+ ..+...+...|....-.+.+|||||+..++++.+.+++ .++.|..+||+|+++||++
T Consensus 246 ~ve~E-------------ewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~-----~nftVssmHGDm~qkERd~ 307 (400)
T KOG0328|consen 246 AVEKE-------------EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRE-----ANFTVSSMHGDMEQKERDK 307 (400)
T ss_pred eechh-------------hhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHh-----hCceeeeccCCcchhHHHH
Confidence 22111 11334444455444456899999999999999999988 6789999999999999999
Q ss_pred HhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEe
Q psy3476 472 VFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRL 550 (1417)
Q Consensus 472 v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L 550 (1417)
+...|+.|+-+|+++|++-++|+|+|.|..||| ||.|.+.+.|+ ||+||+||.| .|.++.+
T Consensus 308 im~dFRsg~SrvLitTDVwaRGiDv~qVslviN--------YDLP~nre~YI----------HRIGRSGRFGRkGvainF 369 (400)
T KOG0328|consen 308 IMNDFRSGKSRVLITTDVWARGIDVQQVSLVIN--------YDLPNNRELYI----------HRIGRSGRFGRKGVAINF 369 (400)
T ss_pred HHHHhhcCCceEEEEechhhccCCcceeEEEEe--------cCCCccHHHHh----------hhhccccccCCcceEEEE
Confidence 999999999999999999999999999999999 99998877777 9999999999 7999999
Q ss_pred cCHHHHHHhh
Q psy3476 551 YSEEQYSLLA 560 (1417)
Q Consensus 551 ~t~~~~~~l~ 560 (1417)
+..++...+.
T Consensus 370 Vk~~d~~~lr 379 (400)
T KOG0328|consen 370 VKSDDLRILR 379 (400)
T ss_pred ecHHHHHHHH
Confidence 9999887654
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.3e-28 Score=308.82 Aligned_cols=205 Identities=19% Similarity=0.192 Sum_probs=149.5
Q ss_pred CccEEEEecCcccccCc-chHHHHHH--HHhccCCCCcEEEEccCCCHH---HHHHHhccCceEEEeCCcccceeEEecc
Q psy3476 319 SYDVLVLDEIHERHLHG-DFLLGVIK--CLLHSTAEVKIILMSATINIE---LFHTYFNRIAKIIKVPGRLYPIQLEYHP 392 (1417)
Q Consensus 319 ~~~~VIlDEaHER~l~~-d~ll~llk--~l~~~r~~~qvIlmSATln~~---~~~~~f~~~~~vi~v~gr~~pv~v~~~~ 392 (1417)
.+++|||||||..+-++ +|...+.. .+....++.+++++|||++.. ++.+.++...+++...+...| .+.|..
T Consensus 581 ~LslIVIDEAHcVSqWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~Sf~Rp-NL~y~V 659 (1195)
T PLN03137 581 LLARFVIDEAHCVSQWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRP-NLWYSV 659 (1195)
T ss_pred ccceeccCcchhhhhcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecccCcc-ceEEEE
Confidence 47889999999554444 57666543 344556788999999999643 455555322222222211111 222221
Q ss_pred ccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHH
Q psy3476 393 IVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRV 472 (1417)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v 472 (1417)
.... ......+...+... ..++..||||+++++++.+++.|.. .++.+.++||+|++++|..+
T Consensus 660 v~k~---------kk~le~L~~~I~~~---~~~esgIIYC~SRke~E~LAe~L~~-----~Gika~~YHAGLs~eeR~~v 722 (1195)
T PLN03137 660 VPKT---------KKCLEDIDKFIKEN---HFDECGIIYCLSRMDCEKVAERLQE-----FGHKAAFYHGSMDPAQRAFV 722 (1195)
T ss_pred eccc---------hhHHHHHHHHHHhc---ccCCCceeEeCchhHHHHHHHHHHH-----CCCCeeeeeCCCCHHHHHHH
Confidence 1100 00122333333322 2245789999999999999999987 67899999999999999999
Q ss_pred hccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEec
Q psy3476 473 FHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLY 551 (1417)
Q Consensus 473 ~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~ 551 (1417)
++.|..|+.+|||||+++++|||+|+|++||+ ||.|.++..|. ||+|||||.| +|.|+.+|
T Consensus 723 qe~F~~Gei~VLVATdAFGMGIDkPDVR~VIH--------ydlPkSiEsYy----------QriGRAGRDG~~g~cILly 784 (1195)
T PLN03137 723 QKQWSKDEINIICATVAFGMGINKPDVRFVIH--------HSLPKSIEGYH----------QECGRAGRDGQRSSCVLYY 784 (1195)
T ss_pred HHHHhcCCCcEEEEechhhcCCCccCCcEEEE--------cCCCCCHHHHH----------hhhcccCCCCCCceEEEEe
Confidence 99999999999999999999999999999999 99888776666 9999999999 89999999
Q ss_pred CHHHHHHh
Q psy3476 552 SEEQYSLL 559 (1417)
Q Consensus 552 t~~~~~~l 559 (1417)
+..++..+
T Consensus 785 s~~D~~~~ 792 (1195)
T PLN03137 785 SYSDYIRV 792 (1195)
T ss_pred cHHHHHHH
Confidence 98887543
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-28 Score=306.95 Aligned_cols=205 Identities=19% Similarity=0.265 Sum_probs=148.9
Q ss_pred CCccEEEEecCcccccCc-chHHHH--HHHHhccCCCCcEEEEccCCCHH---HHHHHhccCceEEEeCCcccceeEEec
Q psy3476 318 SSYDVLVLDEIHERHLHG-DFLLGV--IKCLLHSTAEVKIILMSATINIE---LFHTYFNRIAKIIKVPGRLYPIQLEYH 391 (1417)
Q Consensus 318 ~~~~~VIlDEaHER~l~~-d~ll~l--lk~l~~~r~~~qvIlmSATln~~---~~~~~f~~~~~vi~v~gr~~pv~v~~~ 391 (1417)
.++++|||||||..+.++ +|...+ +..+....++.+++++|||++.. .+.+.+.-..+.+.+.....| .+.|.
T Consensus 138 ~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~~~r~-nl~~~ 216 (607)
T PRK11057 138 WNPALLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRP-NIRYT 216 (607)
T ss_pred CCCCEEEEeCccccccccCcccHHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECCCCCC-cceee
Confidence 368999999999554433 354433 33344456789999999999644 344444323344433321111 11111
Q ss_pred cccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHH
Q psy3476 392 PIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDR 471 (1417)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~ 471 (1417)
-.. .......++..+. ...++++||||+++++++.+++.|.+ .++.+..+||+|++++|.+
T Consensus 217 v~~----------~~~~~~~l~~~l~----~~~~~~~IIFc~tr~~~e~la~~L~~-----~g~~v~~~Ha~l~~~~R~~ 277 (607)
T PRK11057 217 LVE----------KFKPLDQLMRYVQ----EQRGKSGIIYCNSRAKVEDTAARLQS-----RGISAAAYHAGLDNDVRAD 277 (607)
T ss_pred eee----------ccchHHHHHHHHH----hcCCCCEEEEECcHHHHHHHHHHHHh-----CCCCEEEecCCCCHHHHHH
Confidence 000 0112233333332 23467899999999999999999987 6788999999999999999
Q ss_pred HhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEe
Q psy3476 472 VFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRL 550 (1417)
Q Consensus 472 v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L 550 (1417)
+++.|+.|..+|||||+++++|||+|+|++||+ ||.|.+. .+|.||+|||||.| +|.|+.+
T Consensus 278 i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~--------~d~P~s~----------~~y~Qr~GRaGR~G~~~~~ill 339 (607)
T PRK11057 278 VQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH--------FDIPRNI----------ESYYQETGRAGRDGLPAEAMLF 339 (607)
T ss_pred HHHHHHCCCCCEEEEechhhccCCCCCcCEEEE--------eCCCCCH----------HHHHHHhhhccCCCCCceEEEE
Confidence 999999999999999999999999999999999 8887654 45559999999999 7999999
Q ss_pred cCHHHHHHhh
Q psy3476 551 YSEEQYSLLA 560 (1417)
Q Consensus 551 ~t~~~~~~l~ 560 (1417)
|+..+...+.
T Consensus 340 ~~~~d~~~~~ 349 (607)
T PRK11057 340 YDPADMAWLR 349 (607)
T ss_pred eCHHHHHHHH
Confidence 9998876544
|
|
| >KOG0952|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-28 Score=299.44 Aligned_cols=369 Identities=18% Similarity=0.207 Sum_probs=247.2
Q ss_pred cccchhhhhhccccccccccc-cCCCCccEEEEecCc-ccccCcchHHHHHHHHhc----cCCCCcEEEEccCC-CHHHH
Q psy3476 294 GDFLLGVIKCLLHSTVEVAAD-NFLSSYDVLVLDEIH-ERHLHGDFLLGVIKCLLH----STAEVKIILMSATI-NIELF 366 (1417)
Q Consensus 294 ~d~~lgt~~~L~~~~~~~~~d-~~L~~~~~VIlDEaH-ER~l~~d~ll~llk~l~~----~r~~~qvIlmSATl-n~~~~ 366 (1417)
.+++|.||++|+..++....| .+++.+++|||||+| -...++..++.++.+..+ .-..+++|++|||+ |.+++
T Consensus 212 tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~eDv 291 (1230)
T KOG0952|consen 212 TQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNYEDV 291 (1230)
T ss_pred cCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCHHHH
Confidence 467888999999877777554 467899999999999 112233455666555542 34678999999999 89999
Q ss_pred HHHhccC--ceEEEeCC--cccceeEEecccccc-ccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHH
Q psy3476 367 HTYFNRI--AKIIKVPG--RLYPIQLEYHPIVEL-DRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSI 441 (1417)
Q Consensus 367 ~~~f~~~--~~vi~v~g--r~~pv~v~~~~~~~~-~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~l 441 (1417)
+.|++-+ +.++...+ |+.|++..+.-.... .......++...+.++.+.+ .++.+++|||+++++..+.
T Consensus 292 A~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~------~~g~qVlvFvhsR~~Ti~t 365 (1230)
T KOG0952|consen 292 ARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFL------QEGHQVLVFVHSRNETIRT 365 (1230)
T ss_pred HHHhcCCCccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHH------HcCCeEEEEEecChHHHHH
Confidence 9999654 45555555 455555444332222 11112223333344455444 3467999999999999999
Q ss_pred HHHHHhhhhc---------cC---------CcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEE
Q psy3476 442 VRAAQEYNEK---------SQ---------GWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVV 503 (1417)
Q Consensus 442 a~~L~~~~~~---------~~---------~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VI 503 (1417)
|+.|.+.... .+ ...+..+|+||..++|..+++.|..|.++|++||.++++|||+|+-.++|
T Consensus 366 A~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViI 445 (1230)
T KOG0952|consen 366 AKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVII 445 (1230)
T ss_pred HHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEe
Confidence 9998764321 01 13466789999999999999999999999999999999999999988888
Q ss_pred cCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHHHHHH------------------hhcc
Q psy3476 504 DSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEEQYSL------------------LAEY 562 (1417)
Q Consensus 504 dsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~~~~~------------------l~~~ 562 (1417)
- .+..||...+. + .-.+.....|..|||||++ .|..+.+-+.+..+. +.+.
T Consensus 446 K----GT~~ydsskg~--f--~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl~~~~piES~~~~~L~dn 517 (1230)
T KOG0952|consen 446 K----GTQVYDSSKGS--F--VDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLLTGQNPIESQLLPCLIDN 517 (1230)
T ss_pred c----CCcccccccCc--e--eeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHHcCCChhHHHHHHHHHHh
Confidence 5 56789987752 1 2345678889999999998 588876666554332 2233
Q ss_pred CCCcccccChHHHHHHHHhhCCC--------CCcCC----CCCCC-CCc-----chhHHHHHHHHhcCCCCCC-----CC
Q psy3476 563 STPEIRRVSIDSLLLSLVCMGLG--------DVRKF----PFLEA-PPA-----ENIESSVRSLTQHGAIDSK-----ER 619 (1417)
Q Consensus 563 ~~pEI~r~~L~~~lL~lk~lgi~--------~~~~f----~~l~p-P~~-----~~l~~Al~~L~~lGaId~~-----~~ 619 (1417)
...||-...+.++--.+..++.. |+..+ ..+.+ |.. +.+..++..|.+...|--+ -+
T Consensus 518 LnAEi~LgTVt~VdeAVeWL~yTylYVRm~KNP~~Ygi~~~~l~~dp~l~s~~~~l~~~~~~~L~~~qmi~~D~~t~~~~ 597 (1230)
T KOG0952|consen 518 LNAEISLGTVTNVDEAVEWLKYTYLYVRMRKNPMAYGISYEELEPDPRLESHRRELCLVAAMELDKVQMIRFDERTGYLK 597 (1230)
T ss_pred hhhheeeceeecHHHHHHHhhceeEEEEeccChHHhhhhhhcccCCchHHHHHHHHHHHHHHHhhhhheEEEecccceEc
Confidence 34444433222222223333211 11111 11222 222 2455677777777555322 25
Q ss_pred cChhhhhccCCCCChhhHHHHHhhhc-cCChhhHHHHhhhccCCCccccCCCCChhHHHHH
Q psy3476 620 VTSLGRFLSDLPVDIPLGKMLVFGSM-FHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETAR 679 (1417)
Q Consensus 620 lT~LG~~ls~lpldp~lak~Ll~~~~-f~cle~vl~IaA~Lsv~~~F~~~~~~~~~~~~~r 679 (1417)
.|++||.++.+++.....+.++.... |--.+. |.+++|..++|.....++++.++.+
T Consensus 598 stdlGR~aS~yYik~ETme~~nn~~k~~~se~~---iL~lis~aeEfs~ik~R~eE~k~l~ 655 (1230)
T KOG0952|consen 598 STDLGRVASNYYIKYETMETFNNLPKSFYSEDD---ILALISMAEEFSQIKVREEEKKELK 655 (1230)
T ss_pred ccchhhhhhhhhhhhHHHHHHHhcccccCCHHH---HHHHHHhhHhhhhhhhhhhhHHHHH
Confidence 89999999999999999999998876 444444 5677777888988777776665554
|
|
| >KOG0332|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-28 Score=274.69 Aligned_cols=322 Identities=23% Similarity=0.276 Sum_probs=243.2
Q ss_pred hhhhchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc-----CCCcEEEecchHHHHHHHH
Q psy3476 23 EKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA-----GFQRIACTQPRRIACISLS 97 (1417)
Q Consensus 23 ~~~~~~~~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~-----~~~~i~~tqPrr~aa~~~a 97 (1417)
-+|.+..+||+ ..||+-- ..-.++.|.++..|+|||+++..-++.. .....+|..|+|..|.+.-
T Consensus 108 M~F~kPskIQe--~aLPlll--------~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~ 177 (477)
T KOG0332|consen 108 MKFQKPSKIQE--TALPLLL--------AEPPQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTG 177 (477)
T ss_pred hccCCcchHHH--hhcchhh--------cCCchhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHH
Confidence 56777777776 4555521 1235689999999999999887766643 2357889999999999987
Q ss_pred HHHHHHHccccCCeEEEEEeecccccC---CccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHh
Q psy3476 98 KRVAYETLSQYSNLVGYQIRFEKHRRE---KTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKR 174 (1417)
Q Consensus 98 ~rva~e~~~~~g~~vGy~ir~e~~~~~---~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 174 (1417)
+ |..++|...+-++.|.+|....... ...|++.|+|.+++.+.. +|
T Consensus 178 e-Vv~eMGKf~~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~k-----------------------------lk- 226 (477)
T KOG0332|consen 178 E-VVEEMGKFTELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLK-----------------------------LK- 226 (477)
T ss_pred H-HHHHhcCceeeeEEEEecCcccccCCcchhheeeCCCccHHHHHHH-----------------------------HH-
Confidence 6 6678888777788899987632221 347999999998876532 11
Q ss_pred hhhhhhhHHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccc
Q psy3476 175 KKAEEAPKRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDF 254 (1417)
Q Consensus 175 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~ 254 (1417)
T Consensus 227 -------------------------------------------------------------------------------- 226 (477)
T KOG0332|consen 227 -------------------------------------------------------------------------------- 226 (477)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccCCCCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccC
Q psy3476 255 LLGVISPPLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLH 334 (1417)
Q Consensus 255 l~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~ 334 (1417)
| ..+..++++|+|||+...-.
T Consensus 227 ----------~-------------------------------------------------id~~kikvfVlDEAD~Mi~t 247 (477)
T KOG0332|consen 227 ----------C-------------------------------------------------IDLEKIKVFVLDEADVMIDT 247 (477)
T ss_pred ----------h-------------------------------------------------hChhhceEEEecchhhhhhc
Confidence 0 23556889999999943333
Q ss_pred cchHHHHHHHHhccCCCCcEEEEccCCC--HHHHHHHhccCceEEEeCCcc---cceeEEeccccccccccccCCCCChH
Q psy3476 335 GDFLLGVIKCLLHSTAEVKIILMSATIN--IELFHTYFNRIAKIIKVPGRL---YPIQLEYHPIVELDRTKSEKLDPGPY 409 (1417)
Q Consensus 335 ~d~ll~llk~l~~~r~~~qvIlmSATln--~~~~~~~f~~~~~vi~v~gr~---~pv~v~~~~~~~~~~~~~~~~~~~~~ 409 (1417)
.+|...-.++....+++.|++++|||.+ +..|+.-+-.++.++.+..+. .++...|..-...
T Consensus 248 qG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~------------- 314 (477)
T KOG0332|consen 248 QGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACR------------- 314 (477)
T ss_pred ccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccch-------------
Confidence 3566666666666778999999999994 556666665667777665543 3444444322221
Q ss_pred HHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecch
Q psy3476 410 IRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489 (1417)
Q Consensus 410 ~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnI 489 (1417)
....+.|.+.|....-|+.+|||.|++.+.+++..+.. .+..|..+||.|..++|..+.+.|+.|+-||+|+||+
T Consensus 315 ~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~-----~Gh~V~~l~G~l~~~~R~~ii~~Fr~g~~kVLitTnV 389 (477)
T KOG0332|consen 315 DDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRA-----EGHQVSLLHGDLTVEQRAAIIDRFREGKEKVLITTNV 389 (477)
T ss_pred hhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHh-----cCceeEEeeccchhHHHHHHHHHHhcCcceEEEEech
Confidence 22344555555445568999999999999999999987 7899999999999999999999999999999999999
Q ss_pred hhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHH
Q psy3476 490 AETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEE 554 (1417)
Q Consensus 490 ae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~ 554 (1417)
.+||||++.|.+||| ||.|.....- -....|.||+||+||.| .|.++.|+...
T Consensus 390 ~ARGiDv~qVs~VvN--------ydlP~~~~~~----pD~etYlHRiGRtGRFGkkG~a~n~v~~~ 443 (477)
T KOG0332|consen 390 CARGIDVAQVSVVVN--------YDLPVKYTGE----PDYETYLHRIGRTGRFGKKGLAINLVDDK 443 (477)
T ss_pred hhcccccceEEEEEe--------cCCccccCCC----CCHHHHHHHhcccccccccceEEEeeccc
Confidence 999999999999999 9998764432 36678889999999999 79999988544
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-27 Score=308.46 Aligned_cols=211 Identities=22% Similarity=0.158 Sum_probs=142.2
Q ss_pred CCCCccEEEEecCcccccCc---chHHHHHHHHhccC-CCCcEEEEccCC-CHHHHHHHhccC------ceEEEeCC---
Q psy3476 316 FLSSYDVLVLDEIHERHLHG---DFLLGVIKCLLHST-AEVKIILMSATI-NIELFHTYFNRI------AKIIKVPG--- 381 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~---d~ll~llk~l~~~r-~~~qvIlmSATl-n~~~~~~~f~~~------~~vi~v~g--- 381 (1417)
.+.++++||+||+|+ ..+. ..+...+.++.... ++.|+|++|||+ |.+.+++|+... .++..+..
T Consensus 169 ~l~~l~~VVIDE~H~-l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~ 247 (876)
T PRK13767 169 KLRTVKWVIVDEIHS-LAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFV 247 (876)
T ss_pred HHhcCCEEEEechhh-hccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCC
Confidence 577899999999993 3322 23334444444433 678999999999 678889988531 11111111
Q ss_pred cccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhc-cCCcEEEEe
Q psy3476 382 RLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEK-SQGWIVLPL 460 (1417)
Q Consensus 382 r~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~-~~~~~V~~L 460 (1417)
+.+++.+.. +...... .........+...+.+.+. ..+++||||||++.++.++..|.+.... ..+..+..+
T Consensus 248 k~~~i~v~~-p~~~l~~----~~~~~~~~~l~~~L~~~i~--~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~h 320 (876)
T PRK13767 248 KPFDIKVIS-PVDDLIH----TPAEEISEALYETLHELIK--EHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAH 320 (876)
T ss_pred ccceEEEec-cCccccc----cccchhHHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeee
Confidence 111221111 1100000 0000111233344444332 3578999999999999999999864321 124679999
Q ss_pred cCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCC
Q psy3476 461 HSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAG 540 (1417)
Q Consensus 461 Hs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAG 540 (1417)
||+|++++|..+++.|++|..+|||||+++++|||||+|++||+ |+.|.+ .++|.||+||||
T Consensus 321 Hg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~--------~~~P~s----------v~~ylQRiGRaG 382 (876)
T PRK13767 321 HSSLSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVL--------LGSPKS----------VSRLLQRIGRAG 382 (876)
T ss_pred eCCCCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEE--------eCCCCC----------HHHHHHhcccCC
Confidence 99999999999999999999999999999999999999999999 877764 455669999999
Q ss_pred CCC----CCeEEEecC
Q psy3476 541 RTG----PGVCYRLYS 552 (1417)
Q Consensus 541 R~g----~G~cy~L~t 552 (1417)
|.+ .|.++....
T Consensus 383 R~~g~~~~g~ii~~~~ 398 (876)
T PRK13767 383 HRLGEVSKGRIIVVDR 398 (876)
T ss_pred CCCCCCCcEEEEEcCc
Confidence 873 477776543
|
|
| >KOG0335|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=288.87 Aligned_cols=307 Identities=20% Similarity=0.260 Sum_probs=225.4
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHH----cC-----------CCcEEEecchHHHHHHHHHHHHHHHcc
Q psy3476 42 QYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ----AG-----------FQRIACTQPRRIACISLSKRVAYETLS 106 (1417)
Q Consensus 42 ~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile----~~-----------~~~i~~tqPrr~aa~~~a~rva~e~~~ 106 (1417)
.+|+-.+..+.+++..+++|+||||||..+..++++ .+ +.++++..|+|.+|.|+..+..+-...
T Consensus 99 pvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~ 178 (482)
T KOG0335|consen 99 PVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYL 178 (482)
T ss_pred cceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhccc
Confidence 457778899999999999999999999876655543 32 357999999999999998876654432
Q ss_pred c-cCCeEEEEEee----cccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhh
Q psy3476 107 Q-YSNLVGYQIRF----EKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAP 181 (1417)
Q Consensus 107 ~-~g~~vGy~ir~----e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (1417)
. +-..++|.-+- .......+.|+++|+|.|...+.+.
T Consensus 179 s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g-------------------------------------- 220 (482)
T KOG0335|consen 179 SGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERG-------------------------------------- 220 (482)
T ss_pred ccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcc--------------------------------------
Confidence 1 11222332210 0112356889999999988765433
Q ss_pred HHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCC
Q psy3476 182 KRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISP 261 (1417)
Q Consensus 182 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~ 261 (1417)
T Consensus 221 -------------------------------------------------------------------------------- 220 (482)
T KOG0335|consen 221 -------------------------------------------------------------------------------- 220 (482)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccC-cchHHH
Q psy3476 262 PLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLH-GDFLLG 340 (1417)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~-~d~ll~ 340 (1417)
.-.|++++++|||||| |+++ .+|...
T Consensus 221 ----------------------------------------------------~i~l~~~k~~vLDEAD-rMlD~mgF~p~ 247 (482)
T KOG0335|consen 221 ----------------------------------------------------KISLDNCKFLVLDEAD-RMLDEMGFEPQ 247 (482)
T ss_pred ----------------------------------------------------eeehhhCcEEEecchH-Hhhhhcccccc
Confidence 0236678899999999 8888 899999
Q ss_pred HHHHHhccC----CCCcEEEEccCCC--HHHHHHHhccC-ceEEEeC--Ccccc-eeEEeccccccccccccCCCCChHH
Q psy3476 341 VIKCLLHST----AEVKIILMSATIN--IELFHTYFNRI-AKIIKVP--GRLYP-IQLEYHPIVELDRTKSEKLDPGPYI 410 (1417)
Q Consensus 341 llk~l~~~r----~~~qvIlmSATln--~~~~~~~f~~~-~~vi~v~--gr~~p-v~v~~~~~~~~~~~~~~~~~~~~~~ 410 (1417)
+-+++.... ...|.++||||.+ .+.+..+|..+ ...+.+. |+.-. +....... ... ....
T Consensus 248 Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V-~~~---------~kr~ 317 (482)
T KOG0335|consen 248 IRKIVEQLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFV-NEM---------EKRS 317 (482)
T ss_pred HHHHhcccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeeccccccceeEeeee-cch---------hhHH
Confidence 988887653 3789999999995 44566666432 3223221 22111 11111111 000 1122
Q ss_pred HHHHHHHhhCCCCCCC-----cEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEE
Q psy3476 411 RILSIIDKKYPRTERG-----DVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV 485 (1417)
Q Consensus 411 ~il~~l~~~~~~~~~g-----~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLV 485 (1417)
++++.+.........+ .++|||.+++.+..++..|.. .++....+||..++.+|.+.++.|++|+..|+|
T Consensus 318 ~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~-----~~~~~~sIhg~~tq~er~~al~~Fr~g~~pvlV 392 (482)
T KOG0335|consen 318 KLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSS-----NGYPAKSIHGDRTQIEREQALNDFRNGKAPVLV 392 (482)
T ss_pred HHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhc-----CCCCceeecchhhhhHHHHHHHHhhcCCcceEE
Confidence 3444443332111234 799999999999999999987 788999999999999999999999999999999
Q ss_pred ecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecC
Q psy3476 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYS 552 (1417)
Q Consensus 486 ATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t 552 (1417)
||||++||+|||+|++||+ ||.|..+..|+ ||+||+||.| .|.+..|+.
T Consensus 393 aT~VaaRGlDi~~V~hVIn--------yDmP~d~d~Yv----------HRIGRTGR~Gn~G~atsf~n 442 (482)
T KOG0335|consen 393 ATNVAARGLDIPNVKHVIN--------YDMPADIDDYV----------HRIGRTGRVGNGGRATSFFN 442 (482)
T ss_pred EehhhhcCCCCCCCceeEE--------eecCcchhhHH----------HhccccccCCCCceeEEEec
Confidence 9999999999999999999 99999988888 9999999999 799999998
|
|
| >KOG0336|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.7e-28 Score=272.93 Aligned_cols=211 Identities=21% Similarity=0.309 Sum_probs=161.4
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCC--HHHHH-HHhccCceEEEeCCcccceeEEec
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATIN--IELFH-TYFNRIAKIIKVPGRLYPIQLEYH 391 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln--~~~~~-~~f~~~~~vi~v~gr~~pv~v~~~ 391 (1417)
-.|..+.++|+|||| |+++++|...+.+++...||+.|+++.|||.+ +..++ +|+ .+ |++..-|..--+.+.-.
T Consensus 363 i~l~siTYlVlDEAD-rMLDMgFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~sY~-Ke-p~~v~vGsLdL~a~~sV 439 (629)
T KOG0336|consen 363 INLASITYLVLDEAD-RMLDMGFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQSYL-KE-PMIVYVGSLDLVAVKSV 439 (629)
T ss_pred eeeeeeEEEEecchh-hhhcccccHHHHHHhhhcCCcceeeeecccCchHHHHHHHHhh-hC-ceEEEecccceeeeeee
Confidence 357789999999999 99999999999999999999999999999996 44444 566 33 33333333211111111
Q ss_pred cccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHH
Q psy3476 392 PIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDR 471 (1417)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~ 471 (1417)
.....-. -+ .....+++...+.. ....++||||..+..++.+...+.- .++..-.|||+-.+.+|+.
T Consensus 440 kQ~i~v~-----~d-~~k~~~~~~f~~~m--s~ndKvIiFv~~K~~AD~LSSd~~l-----~gi~~q~lHG~r~Q~DrE~ 506 (629)
T KOG0336|consen 440 KQNIIVT-----TD-SEKLEIVQFFVANM--SSNDKVIIFVSRKVMADHLSSDFCL-----KGISSQSLHGNREQSDREM 506 (629)
T ss_pred eeeEEec-----cc-HHHHHHHHHHHHhc--CCCceEEEEEechhhhhhccchhhh-----cccchhhccCChhhhhHHH
Confidence 0000000 00 01112333333333 4467899999999888887766654 6788999999999999999
Q ss_pred HhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEe
Q psy3476 472 VFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRL 550 (1417)
Q Consensus 472 v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L 550 (1417)
.++.|+.|+++|||||++|.+|+|+|||++|+| ||.|.+++.|+ ||+||+||+| .|..+.+
T Consensus 507 al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~N--------yDFP~nIeeYV----------HRvGrtGRaGr~G~sis~ 568 (629)
T KOG0336|consen 507 ALEDFKSGEVRILVATDLASRGLDVPDITHVYN--------YDFPRNIEEYV----------HRVGRTGRAGRTGTSISF 568 (629)
T ss_pred HHHhhhcCceEEEEEechhhcCCCchhcceeec--------cCCCccHHHHH----------HHhcccccCCCCcceEEE
Confidence 999999999999999999999999999999999 99999988888 9999999999 7999999
Q ss_pred cCHHHHHHh
Q psy3476 551 YSEEQYSLL 559 (1417)
Q Consensus 551 ~t~~~~~~l 559 (1417)
++..+....
T Consensus 569 lt~~D~~~a 577 (629)
T KOG0336|consen 569 LTRNDWSMA 577 (629)
T ss_pred EehhhHHHH
Confidence 999887643
|
|
| >KOG0326|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-28 Score=267.45 Aligned_cols=322 Identities=23% Similarity=0.261 Sum_probs=235.3
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCCC-----cEEEecchHHHHHHHHHHHHH
Q psy3476 28 LMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ-----RIACTQPRRIACISLSKRVAY 102 (1417)
Q Consensus 28 ~~~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~~-----~i~~tqPrr~aa~~~a~rva~ 102 (1417)
++.|.+.--.-|. +.|++.+.....+++++..|..|+|||.....+++|.--. ..+|..|+|..|++.++ ++.
T Consensus 97 LmgIfe~G~ekPS-PiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSq-vc~ 174 (459)
T KOG0326|consen 97 LMGIFEKGFEKPS-PIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQ-VCK 174 (459)
T ss_pred HHHHHHhccCCCC-CccccccceeecchhhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHH-HHH
Confidence 4556555444443 4588888888999999999999999998877777774321 35677788999998865 677
Q ss_pred HHccccCCeEEEEEeecc------cccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhh
Q psy3476 103 ETLSQYSNLVGYQIRFEK------HRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKK 176 (1417)
Q Consensus 103 e~~~~~g~~vGy~ir~e~------~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (1417)
+++...|-.|-....+.+ +..+...++++|||.+++.+...
T Consensus 175 ~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~Kg--------------------------------- 221 (459)
T KOG0326|consen 175 ELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKG--------------------------------- 221 (459)
T ss_pred HHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcc---------------------------------
Confidence 776665544332222111 12233456666666666543221
Q ss_pred hhhhhHHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhcccccccee
Q psy3476 177 AEEAPKRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLL 256 (1417)
Q Consensus 177 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~ 256 (1417)
T Consensus 222 -------------------------------------------------------------------------------- 221 (459)
T KOG0326|consen 222 -------------------------------------------------------------------------------- 221 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eccCCCCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcc
Q psy3476 257 GVISPPLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGD 336 (1417)
Q Consensus 257 ~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d 336 (1417)
-..+++...+|+|||| ..++.+
T Consensus 222 ---------------------------------------------------------Va~ls~c~~lV~DEAD-KlLs~~ 243 (459)
T KOG0326|consen 222 ---------------------------------------------------------VADLSDCVILVMDEAD-KLLSVD 243 (459)
T ss_pred ---------------------------------------------------------cccchhceEEEechhh-hhhchh
Confidence 1457788999999999 789999
Q ss_pred hHHHHHHHHhccCCCCcEEEEccCCC--HHHHHHHhccCceEEEeCCccc--ceeEEeccccccccccccCCCCChHHHH
Q psy3476 337 FLLGVIKCLLHSTAEVKIILMSATIN--IELFHTYFNRIAKIIKVPGRLY--PIQLEYHPIVELDRTKSEKLDPGPYIRI 412 (1417)
Q Consensus 337 ~ll~llk~l~~~r~~~qvIlmSATln--~~~~~~~f~~~~~vi~v~gr~~--pv~v~~~~~~~~~~~~~~~~~~~~~~~i 412 (1417)
|...+.+.+..++++.|++++|||.+ +..|.+-+..++-.|..-.... .++.+|....+. .....
T Consensus 244 F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV~e~-----------qKvhC 312 (459)
T KOG0326|consen 244 FQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFVEER-----------QKVHC 312 (459)
T ss_pred hhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeeechh-----------hhhhh
Confidence 99999999999999999999999996 4444433324444444333222 233333322111 11122
Q ss_pred HHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhc
Q psy3476 413 LSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAET 492 (1417)
Q Consensus 413 l~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~ 492 (1417)
+..+... ..-.+.+||||+.+.+|.+|+.+.+ -++.++..|+.|.++.|.+||..|++|.-+.+||||.+.+
T Consensus 313 LntLfsk---LqINQsIIFCNS~~rVELLAkKITe-----lGyscyyiHakM~Q~hRNrVFHdFr~G~crnLVctDL~TR 384 (459)
T KOG0326|consen 313 LNTLFSK---LQINQSIIFCNSTNRVELLAKKITE-----LGYSCYYIHAKMAQEHRNRVFHDFRNGKCRNLVCTDLFTR 384 (459)
T ss_pred HHHHHHH---hcccceEEEeccchHhHHHHHHHHh-----ccchhhHHHHHHHHhhhhhhhhhhhccccceeeehhhhhc
Confidence 3333322 2346899999999999999999988 6788999999999999999999999999999999999999
Q ss_pred cCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHHh
Q psy3476 493 SITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLL 559 (1417)
Q Consensus 493 GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~l 559 (1417)
||||++|++||| ||.|...++|. ||+||+||.| .|.++.|++-++...+
T Consensus 385 GIDiqavNvVIN--------FDfpk~aEtYL----------HRIGRsGRFGhlGlAInLityedrf~L 434 (459)
T KOG0326|consen 385 GIDIQAVNVVIN--------FDFPKNAETYL----------HRIGRSGRFGHLGLAINLITYEDRFNL 434 (459)
T ss_pred ccccceeeEEEe--------cCCCCCHHHHH----------HHccCCccCCCcceEEEEEehhhhhhH
Confidence 999999999999 99998777766 9999999999 7999999988776543
|
|
| >KOG0348|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-27 Score=276.41 Aligned_cols=326 Identities=21% Similarity=0.235 Sum_probs=227.5
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC------CC-----cEEEecchHHHHHHHHHHHHHHHccccC
Q psy3476 41 AQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG------FQ-----RIACTQPRRIACISLSKRVAYETLSQYS 109 (1417)
Q Consensus 41 ~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~------~~-----~i~~tqPrr~aa~~~a~rva~e~~~~~g 109 (1417)
...|++.|..+.+++.++|.++||||||.....+|.+.- .. -.+|..|+|..|.|+.+-+.+-... +-
T Consensus 161 TsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~-~h 239 (708)
T KOG0348|consen 161 TSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKP-FH 239 (708)
T ss_pred chHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcC-ce
Confidence 466888888889999999999999999988666665531 11 2678889999999999866655433 22
Q ss_pred C-eEEEEEeecccccC------CccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhH
Q psy3476 110 N-LVGYQIRFEKHRRE------KTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPK 182 (1417)
Q Consensus 110 ~-~vGy~ir~e~~~~~------~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (1417)
= --|+.+.+|++.++ ..+|++.|||.|++++.+-
T Consensus 240 WIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT--------------------------------------- 280 (708)
T KOG0348|consen 240 WIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNT--------------------------------------- 280 (708)
T ss_pred EEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhcc---------------------------------------
Confidence 1 22667788888765 4579999999999887653
Q ss_pred HhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCC
Q psy3476 183 RRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPP 262 (1417)
Q Consensus 183 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~ 262 (1417)
T Consensus 281 -------------------------------------------------------------------------------- 280 (708)
T KOG0348|consen 281 -------------------------------------------------------------------------------- 280 (708)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHH
Q psy3476 263 LHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVI 342 (1417)
Q Consensus 263 ~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~ll 342 (1417)
....++++.++|+||+| |.++.+|...+-
T Consensus 281 --------------------------------------------------~~i~~s~LRwlVlDEaD-rlleLGfekdit 309 (708)
T KOG0348|consen 281 --------------------------------------------------KSIKFSRLRWLVLDEAD-RLLELGFEKDIT 309 (708)
T ss_pred --------------------------------------------------chheeeeeeEEEecchh-HHHhccchhhHH
Confidence 00235568899999999 888888877665
Q ss_pred HHHhcc-------------CCCCcEEEEccCCC--HHHHHHHhccCceEEEeCCc---cccee----------------E
Q psy3476 343 KCLLHS-------------TAEVKIILMSATIN--IELFHTYFNRIAKIIKVPGR---LYPIQ----------------L 388 (1417)
Q Consensus 343 k~l~~~-------------r~~~qvIlmSATln--~~~~~~~f~~~~~vi~v~gr---~~pv~----------------v 388 (1417)
.++... ++..+-+++|||++ +..+++.--.++..|..+.. ..|-. .
T Consensus 310 ~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~ 389 (708)
T KOG0348|consen 310 QILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDS 389 (708)
T ss_pred HHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCccccccccc
Confidence 544332 23467899999994 56666654345555542211 01100 0
Q ss_pred EeccccccccccccCCCC-ChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhc----------------
Q psy3476 389 EYHPIVELDRTKSEKLDP-GPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEK---------------- 451 (1417)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~-~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~---------------- 451 (1417)
.-.|........ .+.+ -....+...|.+.....+..+++||+++.+.++--++.+......
T Consensus 390 ~~iPeqL~qry~--vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~ 467 (708)
T KOG0348|consen 390 FAIPEQLLQRYT--VVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPP 467 (708)
T ss_pred ccCcHHhhhceE--ecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChh
Confidence 000100000000 0001 112334445555555555668999999999999988888653211
Q ss_pred -cCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHh
Q psy3476 452 -SQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKA 530 (1417)
Q Consensus 452 -~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISka 530 (1417)
..+..++.|||+|++++|..+|+.|.....-|++|||+|+||+|+|+|+.||. ||+|.. .+
T Consensus 468 l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ--------Yd~P~s----------~a 529 (708)
T KOG0348|consen 468 LFMDLKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQ--------YDPPFS----------TA 529 (708)
T ss_pred hhhcceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEE--------eCCCCC----------HH
Confidence 13567999999999999999999999999999999999999999999999999 999875 45
Q ss_pred hHHhhcCcCCCCC-CCeEEEecCHHHHH
Q psy3476 531 SAEQRKGRAGRTG-PGVCYRLYSEEQYS 557 (1417)
Q Consensus 531 sa~QR~GRAGR~g-~G~cy~L~t~~~~~ 557 (1417)
+|.||+||+.|.| .|.+..+..+.+.+
T Consensus 530 dylHRvGRTARaG~kG~alLfL~P~Eae 557 (708)
T KOG0348|consen 530 DYLHRVGRTARAGEKGEALLFLLPSEAE 557 (708)
T ss_pred HHHHHhhhhhhccCCCceEEEecccHHH
Confidence 5559999999999 68887666554443
|
|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.9e-27 Score=294.82 Aligned_cols=206 Identities=23% Similarity=0.281 Sum_probs=147.3
Q ss_pred CCCccEEEEecCcccccCc-chHHHHHH--HHhccCCCCcEEEEccCCCHH---HHHHHhccCceEEEeCCcccceeEEe
Q psy3476 317 LSSYDVLVLDEIHERHLHG-DFLLGVIK--CLLHSTAEVKIILMSATINIE---LFHTYFNRIAKIIKVPGRLYPIQLEY 390 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~-d~ll~llk--~l~~~r~~~qvIlmSATln~~---~~~~~f~~~~~vi~v~gr~~pv~v~~ 390 (1417)
..++++|||||||..+.++ +|...+.+ .+....++.+++++|||.+.. .+.+++.-..+.+.+..-..| .+.|
T Consensus 125 ~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-nl~~ 203 (591)
T TIGR01389 125 RIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLRLADANEFITSFDRP-NLRF 203 (591)
T ss_pred cCCCCEEEEeCCcccccccCccHHHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEecCCCCC-CcEE
Confidence 4578999999999554433 45554433 233344566799999999644 455666322222222111011 1111
Q ss_pred ccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHH
Q psy3476 391 HPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQD 470 (1417)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~ 470 (1417)
..... ......+.+.+.. ..+++.||||+++++++.+++.|.. .++.+..+||+|+.++|.
T Consensus 204 ~v~~~----------~~~~~~l~~~l~~----~~~~~~IIf~~sr~~~e~la~~L~~-----~g~~~~~~H~~l~~~~R~ 264 (591)
T TIGR01389 204 SVVKK----------NNKQKFLLDYLKK----HRGQSGIIYASSRKKVEELAERLES-----QGISALAYHAGLSNKVRA 264 (591)
T ss_pred EEEeC----------CCHHHHHHHHHHh----cCCCCEEEEECcHHHHHHHHHHHHh-----CCCCEEEEECCCCHHHHH
Confidence 11000 1112334444432 2357899999999999999999976 578899999999999999
Q ss_pred HHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEE
Q psy3476 471 RVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYR 549 (1417)
Q Consensus 471 ~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~ 549 (1417)
.+++.|.+|..+|||||+++++|||+|+|++||+ ||.|.+...| .||+|||||.| +|.|+.
T Consensus 265 ~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~--------~~~p~s~~~y----------~Q~~GRaGR~G~~~~~il 326 (591)
T TIGR01389 265 ENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIH--------YDMPGNLESY----------YQEAGRAGRDGLPAEAIL 326 (591)
T ss_pred HHHHHHHcCCCcEEEEechhhccCcCCCCCEEEE--------cCCCCCHHHH----------hhhhccccCCCCCceEEE
Confidence 9999999999999999999999999999999999 8887765554 49999999999 899999
Q ss_pred ecCHHHHHHhh
Q psy3476 550 LYSEEQYSLLA 560 (1417)
Q Consensus 550 L~t~~~~~~l~ 560 (1417)
+|+..+...+.
T Consensus 327 ~~~~~d~~~~~ 337 (591)
T TIGR01389 327 LYSPADIALLK 337 (591)
T ss_pred ecCHHHHHHHH
Confidence 99998876533
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >KOG0347|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-28 Score=284.91 Aligned_cols=112 Identities=20% Similarity=0.356 Sum_probs=104.7
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVV 503 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VI 503 (1417)
.+|..|||||+.+.+..++-.|.. .++..++||+.|.+.+|.+.++.|++..-.|+||||+|+||+|||+|.+||
T Consensus 462 yPGrTlVF~NsId~vKRLt~~L~~-----L~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVI 536 (731)
T KOG0347|consen 462 YPGRTLVFCNSIDCVKRLTVLLNN-----LDIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVI 536 (731)
T ss_pred cCCceEEEechHHHHHHHHHHHhh-----cCCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEE
Confidence 479999999999999999999987 568889999999999999999999999999999999999999999999999
Q ss_pred cCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHH
Q psy3476 504 DSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSL 558 (1417)
Q Consensus 504 dsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~ 558 (1417)
+ |..|.....|+ ||.||+.|.+ .|....|+.+.+...
T Consensus 537 H--------YqVPrtseiYV----------HRSGRTARA~~~Gvsvml~~P~e~~~ 574 (731)
T KOG0347|consen 537 H--------YQVPRTSEIYV----------HRSGRTARANSEGVSVMLCGPQEVGP 574 (731)
T ss_pred E--------eecCCccceeE----------ecccccccccCCCeEEEEeChHHhHH
Confidence 9 99999999998 9999999999 799999998877543
|
|
| >KOG0339|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-27 Score=268.86 Aligned_cols=208 Identities=26% Similarity=0.357 Sum_probs=163.2
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCC--HHHHH-HHhccCceEEEeCCcccceeEEec
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATIN--IELFH-TYFNRIAKIIKVPGRLYPIQLEYH 391 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln--~~~~~-~~f~~~~~vi~v~gr~~pv~v~~~ 391 (1417)
..+.+++++|+||++ |+.+++|...+-.+..+.+++.|.++||||+. ++.++ +++.+...++..+-..-
T Consensus 366 tn~~rvS~LV~DEad-rmfdmGfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpVrvVqg~vgea------- 437 (731)
T KOG0339|consen 366 TNLSRVSYLVLDEAD-RMFDMGFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPVRVVQGEVGEA------- 437 (731)
T ss_pred ccceeeeEEEEechh-hhhccccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCeeEEEeehhcc-------
Confidence 356789999999999 99999999999999999999999999999994 45554 55544444443321000
Q ss_pred cccccccccccCCCCChHHHHHHHHHhhCC-CCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHH
Q psy3476 392 PIVELDRTKSEKLDPGPYIRILSIIDKKYP-RTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQD 470 (1417)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~-~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~ 470 (1417)
..+....-.+-+. -..+++++.+.+. ....|++|||++.+..++.++..|.. .++.+..+||++.+.+|.
T Consensus 438 ---n~dITQ~V~V~~s-~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lkl-----k~~~v~llhgdkdqa~rn 508 (731)
T KOG0339|consen 438 ---NEDITQTVSVCPS-EEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKL-----KGFNVSLLHGDKDQAERN 508 (731)
T ss_pred ---ccchhheeeeccC-cHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhcc-----ccceeeeecCchhhHHHH
Confidence 0000000000001 1223444443332 24568999999999999999999876 789999999999999999
Q ss_pred HHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEE
Q psy3476 471 RVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYR 549 (1417)
Q Consensus 471 ~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~ 549 (1417)
+++..|+.+...|+|+|+++++|+|||+++-||+ ||....+..+. ||+||+||.| .|+.|.
T Consensus 509 ~~ls~fKkk~~~VlvatDvaargldI~~ikTVvn--------yD~ardIdtht----------hrigrtgRag~kGvayT 570 (731)
T KOG0339|consen 509 EVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVN--------YDFARDIDTHT----------HRIGRTGRAGEKGVAYT 570 (731)
T ss_pred HHHHHHhhcCCceEEEeeHhhcCCCccccceeec--------ccccchhHHHH----------HHhhhcccccccceeeE
Confidence 9999999999999999999999999999999999 99999888888 9999999999 799999
Q ss_pred ecCHHHHH
Q psy3476 550 LYSEEQYS 557 (1417)
Q Consensus 550 L~t~~~~~ 557 (1417)
|+|+.+..
T Consensus 571 lvTeKDa~ 578 (731)
T KOG0339|consen 571 LVTEKDAE 578 (731)
T ss_pred EechhhHH
Confidence 99998875
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-28 Score=313.90 Aligned_cols=156 Identities=25% Similarity=0.340 Sum_probs=145.8
Q ss_pred hhhhhHHHhhhccccccCCCcccccccHHHHhhhhcCCccchhhcchHHHHHHHHHhcCCCcccCCCCCCCCccchHHHH
Q psy3476 794 IEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSV 873 (1417)
Q Consensus 794 ~~s~~~~~qR~~~agR~~pG~CyRLyt~~~~~~l~~~~~PEI~r~~L~~~vL~lk~~g~~~~~~f~~l~~P~~~~l~~A~ 873 (1417)
-+|++.|.||+|||||++||+||||||+++|..|.+++.|||+|+||++++|++++||++++..|+|+||||..++.+|+
T Consensus 308 ~iSkasa~QR~GRAGR~~~G~cyrL~t~~~~~~l~~~~~PEI~r~~L~~~~L~l~~~g~~~~~~~~~l~~P~~~~i~~a~ 387 (819)
T TIGR01970 308 RISQASATQRAGRAGRLEPGVCYRLWSEEQHQRLPAQDEPEILQADLSGLALELAQWGAKDPSDLRWLDAPPSVALAAAR 387 (819)
T ss_pred EECHHHHHhhhhhcCCCCCCEEEEeCCHHHHHhhhcCCCcceeccCcHHHHHHHHHcCCCChhhCCCCCCcCHHHHHHHH
Confidence 38999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccccccccccchhhhhcccCCCCccccchhhhcccccchhhHHHHHHhhccccccchhhhcccccccCCCCccCC
Q psy3476 874 RSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVTSLGRFLSDLPVDIP 953 (1417)
Q Consensus 874 ~~L~~lgald~~~~lT~lG~~l~~lPvdp~lak~Ll~~~~~~cl~~~l~i~a~ls~~~~~~~~~~~~~~~~~~~~~f~~~ 953 (1417)
+.|+.+||||++|+||++|+.|+.||+||++||||+.|+.+||.+++++|||+|+.+++... +
T Consensus 388 ~~L~~lgald~~~~lT~~G~~~~~lp~~p~l~~~ll~~~~~~~~~~~~~iaa~ls~~~~~~~-----------------~ 450 (819)
T TIGR01970 388 QLLQRLGALDAQGRLTAHGKAMAALGCHPRLAAMLLSAHSTGLAALACDLAALLEERGLPRQ-----------------G 450 (819)
T ss_pred HHHHHCCCCCCCCCcCHHHHHHHhcCCCHHHHHHHHHhhhcCCHHHHHHHHHHHcCCCCCCC-----------------C
Confidence 99999999999999999999999999999999999999999999999999999998764211 1
Q ss_pred CCCcccccccccc
Q psy3476 954 LGKMLVFGSMFHQ 966 (1417)
Q Consensus 954 ~gd~lt~l~~~~~ 966 (1417)
.+|....+..|+.
T Consensus 451 ~~d~~~~~~~~~~ 463 (819)
T TIGR01970 451 GADLMNRLHRLQQ 463 (819)
T ss_pred cccHHHHHHHHhh
Confidence 4687777777764
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.6e-26 Score=294.25 Aligned_cols=210 Identities=22% Similarity=0.248 Sum_probs=148.9
Q ss_pred ccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhc--c
Q psy3476 295 DFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN--R 372 (1417)
Q Consensus 295 d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~--~ 372 (1417)
|+++|||..+. .+..+.+++++||||+| | + .......+...+++.++++||||+.+..+...+. .
T Consensus 556 dIVIGTp~ll~-------~~v~f~~L~llVIDEah-r-f----gv~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~ 622 (926)
T TIGR00580 556 DILIGTHKLLQ-------KDVKFKDLGLLIIDEEQ-R-F----GVKQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIR 622 (926)
T ss_pred eEEEchHHHhh-------CCCCcccCCEEEeeccc-c-c----chhHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCC
Confidence 45667774331 12457899999999999 3 1 1122334445567889999999987665543322 2
Q ss_pred CceEEEeC-CcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhc
Q psy3476 373 IAKIIKVP-GRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEK 451 (1417)
Q Consensus 373 ~~~vi~v~-gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~ 451 (1417)
+..++..+ ....|+..++.+.. ...+...+.+.+ ..+++++||||+.++++.+++.|++..
T Consensus 623 d~s~I~~~p~~R~~V~t~v~~~~--------------~~~i~~~i~~el--~~g~qv~if~n~i~~~e~l~~~L~~~~-- 684 (926)
T TIGR00580 623 DLSIIATPPEDRLPVRTFVMEYD--------------PELVREAIRREL--LRGGQVFYVHNRIESIEKLATQLRELV-- 684 (926)
T ss_pred CcEEEecCCCCccceEEEEEecC--------------HHHHHHHHHHHH--HcCCeEEEEECCcHHHHHHHHHHHHhC--
Confidence 34444433 22235544432210 011222232222 236899999999999999999998743
Q ss_pred cCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhh
Q psy3476 452 SQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKAS 531 (1417)
Q Consensus 452 ~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkas 531 (1417)
++..+..+||+|++++|.++++.|++|+.+|||||+++|+|||||++++||. ++.+.. +-++
T Consensus 685 -p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi--------~~a~~~---------gls~ 746 (926)
T TIGR00580 685 -PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIII--------ERADKF---------GLAQ 746 (926)
T ss_pred -CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEE--------ecCCCC---------CHHH
Confidence 4678999999999999999999999999999999999999999999999997 665431 2235
Q ss_pred HHhhcCcCCCCC-CCeEEEecCH
Q psy3476 532 AEQRKGRAGRTG-PGVCYRLYSE 553 (1417)
Q Consensus 532 a~QR~GRAGR~g-~G~cy~L~t~ 553 (1417)
+.||+||+||.| .|.||.+++.
T Consensus 747 l~Qr~GRvGR~g~~g~aill~~~ 769 (926)
T TIGR00580 747 LYQLRGRVGRSKKKAYAYLLYPH 769 (926)
T ss_pred HHHHhcCCCCCCCCeEEEEEECC
Confidence 669999999999 7999999854
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-26 Score=291.34 Aligned_cols=210 Identities=19% Similarity=0.198 Sum_probs=141.5
Q ss_pred ccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhccCc
Q psy3476 295 DFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIA 374 (1417)
Q Consensus 295 d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~ 374 (1417)
++++||+..+.. ...+.++++|||||+| |. ... ....+.......++++||||+.+..++....+..
T Consensus 366 ~IvVgT~~ll~~-------~v~~~~l~lvVIDE~H-rf-g~~----qr~~l~~~~~~~~iL~~SATp~prtl~~~~~g~~ 432 (681)
T PRK10917 366 DIVIGTHALIQD-------DVEFHNLGLVIIDEQH-RF-GVE----QRLALREKGENPHVLVMTATPIPRTLAMTAYGDL 432 (681)
T ss_pred CEEEchHHHhcc-------cchhcccceEEEechh-hh-hHH----HHHHHHhcCCCCCEEEEeCCCCHHHHHHHHcCCC
Confidence 455666665531 1347889999999999 32 111 1222333344688999999986665443221222
Q ss_pred eEEEe---CCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHH--------HHHHHHH
Q psy3476 375 KIIKV---PGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGIS--------EISSIVR 443 (1417)
Q Consensus 375 ~vi~v---~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~--------eie~la~ 443 (1417)
.+..+ +....|+...+.... ....+++.+.+.. ..+++++||||..+ .++.+++
T Consensus 433 ~~s~i~~~p~~r~~i~~~~~~~~-------------~~~~~~~~i~~~~--~~g~q~~v~~~~ie~s~~l~~~~~~~~~~ 497 (681)
T PRK10917 433 DVSVIDELPPGRKPITTVVIPDS-------------RRDEVYERIREEI--AKGRQAYVVCPLIEESEKLDLQSAEETYE 497 (681)
T ss_pred ceEEEecCCCCCCCcEEEEeCcc-------------cHHHHHHHHHHHH--HcCCcEEEEEcccccccchhHHHHHHHHH
Confidence 22222 221224443332211 1223344444443 34679999999654 4455666
Q ss_pred HHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccc
Q psy3476 444 AAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQ 523 (1417)
Q Consensus 444 ~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~ 523 (1417)
.|.+.. .++.+..+||+|++++|+.+++.|++|+.+|||||+++|+|||+|++++||+ ||.+..
T Consensus 498 ~L~~~~---~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi--------~~~~r~----- 561 (681)
T PRK10917 498 ELQEAF---PELRVGLLHGRMKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVI--------ENAERF----- 561 (681)
T ss_pred HHHHHC---CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEE--------eCCCCC-----
Confidence 666532 3478999999999999999999999999999999999999999999999998 777641
Q ss_pred eeecCHhhHHhhcCcCCCCC-CCeEEEecC
Q psy3476 524 EFWISKASAEQRKGRAGRTG-PGVCYRLYS 552 (1417)
Q Consensus 524 ~~~ISkasa~QR~GRAGR~g-~G~cy~L~t 552 (1417)
+.+++.||+||+||.| +|.||.+++
T Consensus 562 ----gls~lhQ~~GRvGR~g~~g~~ill~~ 587 (681)
T PRK10917 562 ----GLAQLHQLRGRVGRGAAQSYCVLLYK 587 (681)
T ss_pred ----CHHHHHHHhhcccCCCCceEEEEEEC
Confidence 2356679999999999 899999985
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=282.22 Aligned_cols=285 Identities=20% Similarity=0.202 Sum_probs=190.1
Q ss_pred cccchhhhhhccccccccccccCCCCccEEEEecCccccc--CcchHHHHHHHHhccCCCCcEEEEccCC-CHHHHHHHh
Q psy3476 294 GDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHL--HGDFLLGVIKCLLHSTAEVKIILMSATI-NIELFHTYF 370 (1417)
Q Consensus 294 ~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l--~~d~ll~llk~l~~~r~~~qvIlmSATl-n~~~~~~~f 370 (1417)
+|+++.||+.+.-+...-.....|.++.+|||||+|+-.. .+..+...+.++...-++.|.|++|||+ |.+..++|+
T Consensus 124 PdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~LeRL~~l~~~~qRIGLSATV~~~~~varfL 203 (814)
T COG1201 124 PHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLERLRELAGDFQRIGLSATVGPPEEVAKFL 203 (814)
T ss_pred CcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHHHHHhhCcccEEEeehhccCCHHHHHHHh
Confidence 4566667776553333223346789999999999993221 1122223344555555599999999999 899999999
Q ss_pred ccC---ceEEEeCCcc-cceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHH
Q psy3476 371 NRI---AKIIKVPGRL-YPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQ 446 (1417)
Q Consensus 371 ~~~---~~vi~v~gr~-~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~ 446 (1417)
.+. +.++.+.+.. ..+++.......... ..........|.+... ....+|||+||+..++.++..|+
T Consensus 204 ~g~~~~~~Iv~~~~~k~~~i~v~~p~~~~~~~-------~~~~~~~~~~i~~~v~--~~~ttLIF~NTR~~aE~l~~~L~ 274 (814)
T COG1201 204 VGFGDPCEIVDVSAAKKLEIKVISPVEDLIYD-------EELWAALYERIAELVK--KHRTTLIFTNTRSGAERLAFRLK 274 (814)
T ss_pred cCCCCceEEEEcccCCcceEEEEecCCccccc-------cchhHHHHHHHHHHHh--hcCcEEEEEeChHHHHHHHHHHH
Confidence 753 4677666533 333333222111111 1122233333333332 23489999999999999999998
Q ss_pred hhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceee
Q psy3476 447 EYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFW 526 (1417)
Q Consensus 447 ~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ 526 (1417)
+.. ...+..+||+++.++|..+++.|++|..|++|||+.+|-||||.+|+.||+ |..|.+.+.+.
T Consensus 275 ~~~----~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq--------~~SP~sV~r~l--- 339 (814)
T COG1201 275 KLG----PDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQ--------LGSPKSVNRFL--- 339 (814)
T ss_pred Hhc----CCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEE--------eCCcHHHHHHh---
Confidence 743 267999999999999999999999999999999999999999999999999 88888776666
Q ss_pred cCHhhHHhhcCcCCCCC----CCeEEEecCHHHHHH--------hhccCCCcccccChHHHHHHHHhhCCCCCc------
Q psy3476 527 ISKASAEQRKGRAGRTG----PGVCYRLYSEEQYSL--------LAEYSTPEIRRVSIDSLLLSLVCMGLGDVR------ 588 (1417)
Q Consensus 527 ISkasa~QR~GRAGR~g----~G~cy~L~t~~~~~~--------l~~~~~pEI~r~~L~~~lL~lk~lgi~~~~------ 588 (1417)
||+||+|+.- .|..|.....+-.+. --....+++...+|+-+.-++.++-+....
T Consensus 340 -------QRiGRsgHr~~~~Skg~ii~~~r~dllE~~vi~~~a~~g~le~~~i~~~~LDVLaq~ivg~~~~~~~~~~~~y 412 (814)
T COG1201 340 -------QRIGRAGHRLGEVSKGIIIAEDRDDLLECLVLADLALEGKLERIKIPKNPLDVLAQQIVGMALEKVWEVEEAY 412 (814)
T ss_pred -------HhccccccccCCcccEEEEecCHHHHHHHHHHHHHHHhCCcccCCCCCcchhHHHHHHHHHHhhCcCCHHHHH
Confidence 9999999864 365555442222221 113456777777887776666665443311
Q ss_pred -----CCCCCCCCCcchhHHHHHHHHh
Q psy3476 589 -----KFPFLEAPPAENIESSVRSLTQ 610 (1417)
Q Consensus 589 -----~f~~l~pP~~~~l~~Al~~L~~ 610 (1417)
.+||- .-+.+...+.++.|..
T Consensus 413 ~~vrraypy~-~L~~e~f~~v~~~l~~ 438 (814)
T COG1201 413 RVVRRAYPYA-DLSREDFRLVLRYLAG 438 (814)
T ss_pred HHHHhccccc-cCCHHHHHHHHHHHhh
Confidence 12332 2234566777777776
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=283.13 Aligned_cols=212 Identities=16% Similarity=0.173 Sum_probs=140.0
Q ss_pred ccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhccCc
Q psy3476 295 DFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIA 374 (1417)
Q Consensus 295 d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~ 374 (1417)
++++||+..+.. ...+.++++|||||+|.- .......+.... ......++++||||+....++....+..
T Consensus 340 ~IiVgT~~ll~~-------~~~~~~l~lvVIDEaH~f--g~~qr~~l~~~~-~~~~~~~~l~~SATp~prtl~l~~~~~l 409 (630)
T TIGR00643 340 HLVVGTHALIQE-------KVEFKRLALVIIDEQHRF--GVEQRKKLREKG-QGGFTPHVLVMSATPIPRTLALTVYGDL 409 (630)
T ss_pred CEEEecHHHHhc-------cccccccceEEEechhhc--cHHHHHHHHHhc-ccCCCCCEEEEeCCCCcHHHHHHhcCCc
Confidence 456666665541 134688999999999932 112111222111 1112678999999985554442221221
Q ss_pred --eEEE-eCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHH--------HHHHHHH
Q psy3476 375 --KIIK-VPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGIS--------EISSIVR 443 (1417)
Q Consensus 375 --~vi~-v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~--------eie~la~ 443 (1417)
..+. .+....|+...+.... ....++..+.+.+ ..+++++|||+..+ .++.+++
T Consensus 410 ~~~~i~~~p~~r~~i~~~~~~~~-------------~~~~~~~~i~~~l--~~g~q~~v~~~~i~~s~~~~~~~a~~~~~ 474 (630)
T TIGR00643 410 DTSIIDELPPGRKPITTVLIKHD-------------EKDIVYEFIEEEI--AKGRQAYVVYPLIEESEKLDLKAAEALYE 474 (630)
T ss_pred ceeeeccCCCCCCceEEEEeCcc-------------hHHHHHHHHHHHH--HhCCcEEEEEccccccccchHHHHHHHHH
Confidence 1221 2222234444332211 1123344444333 23678999999764 4556666
Q ss_pred HHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccc
Q psy3476 444 AAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQ 523 (1417)
Q Consensus 444 ~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~ 523 (1417)
.|.+.. .++.+..+||+|++++|..+++.|++|+.+|||||+++|+|||+|++++||. ||.+..
T Consensus 475 ~L~~~~---~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi--------~~~~r~----- 538 (630)
T TIGR00643 475 RLKKAF---PKYNVGLLHGRMKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVI--------EDAERF----- 538 (630)
T ss_pred HHHhhC---CCCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEE--------eCCCcC-----
Confidence 665432 5678999999999999999999999999999999999999999999999998 776641
Q ss_pred eeecCHhhHHhhcCcCCCCC-CCeEEEec
Q psy3476 524 EFWISKASAEQRKGRAGRTG-PGVCYRLY 551 (1417)
Q Consensus 524 ~~~ISkasa~QR~GRAGR~g-~G~cy~L~ 551 (1417)
+-+++.||+||+||.| +|.||.++
T Consensus 539 ----gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 539 ----GLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred ----CHHHHHHHhhhcccCCCCcEEEEEE
Confidence 3456779999999999 89999998
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-25 Score=295.51 Aligned_cols=231 Identities=19% Similarity=0.228 Sum_probs=149.0
Q ss_pred ccchhhhhhccccccccccccCCCCccEEEEecCcccccCc---chHHHHHHHHhcc-CCCCcEEEEccCC-CHHHHHHH
Q psy3476 295 DFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHG---DFLLGVIKCLLHS-TAEVKIILMSATI-NIELFHTY 369 (1417)
Q Consensus 295 d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~---d~ll~llk~l~~~-r~~~qvIlmSATl-n~~~~~~~ 369 (1417)
|++++||+++..+... .....|+++++|||||+|+. ... ..+...+.++... ..+.|+|++|||+ |.+.+++|
T Consensus 101 dILVTTPEsL~~LLts-k~r~~L~~Vr~VIVDE~H~L-~g~kRG~~Lel~LeRL~~l~~~~~QrIgLSATI~n~eevA~~ 178 (1490)
T PRK09751 101 DILITTPESLYLMLTS-RARETLRGVETVIIDEVHAV-AGSKRGAHLALSLERLDALLHTSAQRIGLSATVRSASDVAAF 178 (1490)
T ss_pred CEEEecHHHHHHHHhh-hhhhhhccCCEEEEecHHHh-cccccccHHHHHHHHHHHhCCCCCeEEEEEeeCCCHHHHHHH
Confidence 5566677766543211 11246899999999999933 332 2233344444443 4678999999999 78899999
Q ss_pred hccC--ceEEEeC-CcccceeEEecccccccccc---ccCC-------CCChHHHHHHHHHhhCCCCCCCcEEEEeCCHH
Q psy3476 370 FNRI--AKIIKVP-GRLYPIQLEYHPIVELDRTK---SEKL-------DPGPYIRILSIIDKKYPRTERGDVLIFMSGIS 436 (1417)
Q Consensus 370 f~~~--~~vi~v~-gr~~pv~v~~~~~~~~~~~~---~~~~-------~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~ 436 (1417)
+... ..++..+ .+..++++.. +........ .... .......+...+...+ ...+++||||||+.
T Consensus 179 L~g~~pv~Iv~~~~~r~~~l~v~v-p~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~~~il~~i--~~~~stLVFvNSR~ 255 (1490)
T PRK09751 179 LGGDRPVTVVNPPAMRHPQIRIVV-PVANMDDVSSVASGTGEDSHAGREGSIWPYIETGILDEV--LRHRSTIVFTNSRG 255 (1490)
T ss_pred hcCCCCEEEECCCCCcccceEEEE-ecCchhhccccccccccccchhhhhhhhHHHHHHHHHHH--hcCCCEEEECCCHH
Confidence 9643 2233222 2233444322 211100000 0000 0000011111122222 23578999999999
Q ss_pred HHHHHHHHHHhhhhc----------------------------cCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecc
Q psy3476 437 EISSIVRAAQEYNEK----------------------------SQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488 (1417)
Q Consensus 437 eie~la~~L~~~~~~----------------------------~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATn 488 (1417)
.++.++..|++.... .....+..+||+|++++|..+++.|++|+.+|||||+
T Consensus 256 ~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATs 335 (1490)
T PRK09751 256 LAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATS 335 (1490)
T ss_pred HHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCc
Confidence 999999999764311 0113467899999999999999999999999999999
Q ss_pred hhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC--CCeEE
Q psy3476 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG--PGVCY 548 (1417)
Q Consensus 489 Iae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g--~G~cy 548 (1417)
++|+||||++|++||+ |+.|. |.++|.||+|||||.. .+.++
T Consensus 336 sLELGIDIg~VDlVIq--------~gsP~----------sVas~LQRiGRAGR~~gg~s~gl 379 (1490)
T PRK09751 336 SLELGIDMGAVDLVIQ--------VATPL----------SVASGLQRIGRAGHQVGGVSKGL 379 (1490)
T ss_pred HHHccCCcccCCEEEE--------eCCCC----------CHHHHHHHhCCCCCCCCCccEEE
Confidence 9999999999999999 76654 5666779999999974 34444
|
|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-25 Score=267.38 Aligned_cols=201 Identities=20% Similarity=0.259 Sum_probs=124.6
Q ss_pred ccEEEEecCcccccCc--chHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEeccccccc
Q psy3476 320 YDVLVLDEIHERHLHG--DFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELD 397 (1417)
Q Consensus 320 ~~~VIlDEaHER~l~~--d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~ 397 (1417)
.++||+||+|. .... +++..+++.+. ..+.|+++||||++ +.+.+++....... .. ...+..... ......
T Consensus 125 ~~~iViDE~h~-~~~~~~~~l~~~l~~l~--~~~~~~i~~SATlp-~~l~~~~~~~~~~~-~~-~~~~~~~~~-~~~~~~ 197 (358)
T TIGR01587 125 NSLLIFDEVHF-YDEYTLALILAVLEVLK--DNDVPILLMSATLP-KFLKEYAEKIGYVE-FN-EPLDLKEER-RFERHR 197 (358)
T ss_pred CCEEEEeCCCC-CCHHHHHHHHHHHHHHH--HcCCCEEEEecCch-HHHHHHHhcCCCcc-cc-cCCCCcccc-cccccc
Confidence 47999999993 3332 23334444333 35789999999997 45666663211110 00 001110000 000000
Q ss_pred cccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHH----Hh
Q psy3476 398 RTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDR----VF 473 (1417)
Q Consensus 398 ~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~----v~ 473 (1417)
..............+...+ +.. ..++++||||+++++++.+++.|.+.. ....+..+||++++.+|.+ ++
T Consensus 198 ~~~~~~~~~~~~~~l~~l~-~~~--~~~~~~lVf~~t~~~~~~~~~~L~~~~---~~~~~~~~h~~~~~~~r~~~~~~~~ 271 (358)
T TIGR01587 198 FIKIESDKVGEISSLERLL-EFI--KKGGKIAIIVNTVDRAQEFYQQLKENA---PEEEIMLLHSRFTEKDRAKKEAELL 271 (358)
T ss_pred ceeeccccccCHHHHHHHH-HHh--hCCCeEEEEECCHHHHHHHHHHHHhhc---CCCeEEEEECCCCHHHHHHHHHHHH
Confidence 0000000001111222222 222 236799999999999999999998632 2346999999999999976 48
Q ss_pred ccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCC-----CeEE
Q psy3476 474 HYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP-----GVCY 548 (1417)
Q Consensus 474 ~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~-----G~cy 548 (1417)
+.|++|..+|||||+++|+||||| +++||+ |+. +..++.||+||+||.|. |.+|
T Consensus 272 ~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~--------~~~------------~~~~~iqr~GR~gR~g~~~~~~~~~~ 330 (358)
T TIGR01587 272 EEMKKNEKFVIVATQVIEASLDIS-ADVMIT--------ELA------------PIDSLIQRLGRLHRYGRKNGENFEVY 330 (358)
T ss_pred HHhcCCCCeEEEECcchhceeccC-CCEEEE--------cCC------------CHHHHHHHhccccCCCCCCCCCCeEE
Confidence 899999999999999999999997 667775 432 23467799999999872 3777
Q ss_pred EecCHH
Q psy3476 549 RLYSEE 554 (1417)
Q Consensus 549 ~L~t~~ 554 (1417)
.++...
T Consensus 331 v~~~~~ 336 (358)
T TIGR01587 331 IITIAP 336 (358)
T ss_pred EEeecC
Confidence 776544
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-25 Score=280.32 Aligned_cols=188 Identities=19% Similarity=0.223 Sum_probs=124.8
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhcc--CC---CCcEEEEccCCCH--HHHHHHhccCceEEEeCCcccce-
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHS--TA---EVKIILMSATINI--ELFHTYFNRIAKIIKVPGRLYPI- 386 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~--r~---~~qvIlmSATln~--~~~~~~f~~~~~vi~v~gr~~pv- 386 (1417)
..|++++++|+|||| ++.+|...+..++... ++ +.|+++||||++. ..+...+..+...+.+..+....
T Consensus 167 g~L~~v~~LVLDEAD---Ld~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~V~~~~l~a~ 243 (844)
T TIGR02621 167 GFLGQDALIVHDEAH---LEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHPVLKKRLAAK 243 (844)
T ss_pred hhhccceEEEEehhh---hccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceeeccccccccc
Confidence 357899999999999 5667777766666542 22 3699999999963 34444443333233332211111
Q ss_pred e-EEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCC
Q psy3476 387 Q-LEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLS 465 (1417)
Q Consensus 387 ~-v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls 465 (1417)
. .+|.+.... ......+..+...+. ..++++||||||+++++.+++.|.+ .++ ..+||+|+
T Consensus 244 ki~q~v~v~~e----------~Kl~~lv~~L~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~-----~g~--~lLHG~m~ 305 (844)
T TIGR02621 244 KIVKLVPPSDE----------KFLSTMVKELNLLMK-DSGGAILVFCRTVKHVRKVFAKLPK-----EKF--ELLTGTLR 305 (844)
T ss_pred ceEEEEecChH----------HHHHHHHHHHHHHHh-hCCCcEEEEECCHHHHHHHHHHHHh-----cCC--eEeeCCCC
Confidence 1 112111000 011122222222221 3467899999999999999999976 233 89999999
Q ss_pred HHHHH-----HHhccCCC----CC-------ceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCH
Q psy3476 466 LEEQD-----RVFHYAPE----GL-------RKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISK 529 (1417)
Q Consensus 466 ~~eR~-----~v~~~f~~----G~-------rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISk 529 (1417)
+.+|. ++++.|++ |. .+|||||+++|+||||+. ++||+ ++.| .
T Consensus 306 q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~--------d~aP------------~ 364 (844)
T TIGR02621 306 GAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVC--------DLAP------------F 364 (844)
T ss_pred HHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEE--------CCCC------------H
Confidence 99999 78888876 44 689999999999999997 66665 3322 2
Q ss_pred hhHHhhcCcCCCCCC
Q psy3476 530 ASAEQRKGRAGRTGP 544 (1417)
Q Consensus 530 asa~QR~GRAGR~g~ 544 (1417)
.+|.||+||+||.|.
T Consensus 365 esyIQRiGRtgR~G~ 379 (844)
T TIGR02621 365 ESMQQRFGRVNRFGE 379 (844)
T ss_pred HHHHHHhcccCCCCC
Confidence 466699999999983
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >KOG0951|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.8e-25 Score=272.17 Aligned_cols=365 Identities=20% Similarity=0.249 Sum_probs=241.6
Q ss_pred CCCccEEEEecCccccc---CcchHHHHHHHHhc----cCCCCcEEEEccCC-CHHHHHHHhccCc-eEEE--eCCcccc
Q psy3476 317 LSSYDVLVLDEIHERHL---HGDFLLGVIKCLLH----STAEVKIILMSATI-NIELFHTYFNRIA-KIIK--VPGRLYP 385 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l---~~d~ll~llk~l~~----~r~~~qvIlmSATl-n~~~~~~~f~~~~-~vi~--v~gr~~p 385 (1417)
.+-|+++|+||+| ++ ++..+..+..+... .....+++++|||+ |.++.+.|+.-+. .++. -.-|+.|
T Consensus 435 ~qlvrLlIIDEIH--LLhDdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v~~~glf~fd~syRpvP 512 (1674)
T KOG0951|consen 435 EQLVRLLIIDEIH--LLHDDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRVDPEGLFYFDSSYRPVP 512 (1674)
T ss_pred HHHHHHHhhhhhh--hcccccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhccCcccccccCcccCcCC
Confidence 4457889999999 44 44555555444332 23578999999999 7888888774322 2222 3567888
Q ss_pred eeEEeccccccccccc-cCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhh----------h----
Q psy3476 386 IQLEYHPIVELDRTKS-EKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYN----------E---- 450 (1417)
Q Consensus 386 v~v~~~~~~~~~~~~~-~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~----------~---- 450 (1417)
++..|.........+. +.++...+.+ +.+. ...++||||+.+++|..+.|+.++..+ .
T Consensus 513 L~qq~Igi~ek~~~~~~qamNe~~yeK----Vm~~---agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~ 585 (1674)
T KOG0951|consen 513 LKQQYIGITEKKPLKRFQAMNEACYEK----VLEH---AGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSA 585 (1674)
T ss_pred ccceEeccccCCchHHHHHHHHHHHHH----HHHh---CCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccc
Confidence 8877776554332111 1111112222 2222 345899999999999999999987311 0
Q ss_pred ------------------ccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCccccee
Q psy3476 451 ------------------KSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMS 512 (1417)
Q Consensus 451 ------------------~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~ 512 (1417)
..-.+.+..+|+||+..+|..+++.|.+|.++|+|+|.++++|||+|+-+++|- ...+
T Consensus 586 s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViik----gtqv 661 (1674)
T KOG0951|consen 586 SREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIK----GTQV 661 (1674)
T ss_pred hhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEec----Cccc
Confidence 012456788899999999999999999999999999999999999999999996 5678
Q ss_pred cccCCCccccceeecCHhhHHhhcCcCCCCC-----CCeEEEecCHHHHH--HhhccC-CCcccccChHHHHHHHHhhCC
Q psy3476 513 YDVTAKMSTLQEFWISKASAEQRKGRAGRTG-----PGVCYRLYSEEQYS--LLAEYS-TPEIRRVSIDSLLLSLVCMGL 584 (1417)
Q Consensus 513 yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-----~G~cy~L~t~~~~~--~l~~~~-~pEI~r~~L~~~lL~lk~lgi 584 (1417)
||+.++. -..+|..+..||.|||||++ .|+.+.=+++-+|. .|.+.. .++-.-..|..-+-.-+.+|+
T Consensus 662 y~pekg~----w~elsp~dv~qmlgragrp~~D~~gegiiit~~se~qyyls~mn~qLpiesq~~~rl~d~lnaeiv~Gv 737 (1674)
T KOG0951|consen 662 YDPEKGR----WTELSPLDVMQMLGRAGRPQYDTCGEGIIITDHSELQYYLSLMNQQLPIESQFVSRLADCLNAEIVLGV 737 (1674)
T ss_pred cCcccCc----cccCCHHHHHHHHhhcCCCccCcCCceeeccCchHhhhhHHhhhhcCCChHHHHHHhhhhhhhhhhcch
Confidence 9998873 34579999999999999997 35544444444443 233322 222222234333333444443
Q ss_pred CCCc--------CCCC---CCCCC-----------------cchhHHHHHHHHhcCCCCCC-----CCcChhhhhccCCC
Q psy3476 585 GDVR--------KFPF---LEAPP-----------------AENIESSVRSLTQHGAIDSK-----ERVTSLGRFLSDLP 631 (1417)
Q Consensus 585 ~~~~--------~f~~---l~pP~-----------------~~~l~~Al~~L~~lGaId~~-----~~lT~LG~~ls~lp 631 (1417)
.+.+ +|.+ +..|. .+.+.+|...|++.|.|--+ -..|.+|++.+.++
T Consensus 738 ~~~~d~~~wl~yTylyvRm~~~p~ly~~~~~~~d~~le~~r~~lvhsa~~ll~~~~li~yd~~s~~~~~telg~ias~yy 817 (1674)
T KOG0951|consen 738 RSARDAVDWLGYTYLYVRMVRNPTLYGVSPEASDRLLEQRRADLVHSAATLLDKAGLIKYDRKSGAIQATELGRIASSYY 817 (1674)
T ss_pred hhHHHHHhhhcceeeEEeeccCchhccCCcccchHHHHHHHhhhHHHHHhhHhhcCccccccccCcccchhhccccceee
Confidence 3222 1100 11111 24678889999999999543 25899999999999
Q ss_pred CChhhHHHHHhhhccCChhhHHHHhhhccCCCccccCCCCChhHHHHHhhcc-------cCCCChHHHHHHHH-HHH
Q psy3476 632 VDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELE-------SNHGDPLTVLNAYK-EWL 700 (1417)
Q Consensus 632 ldp~lak~Ll~~~~f~cle~vl~IaA~Lsv~~~F~~~~~~~~~~~~~r~~f~-------~~~sD~ltlln~f~-~w~ 700 (1417)
+.-......-....-.|.+ +.+..+.|..+.|.....++++..+.++.+. .+-.|+.|-+|++. .|.
T Consensus 818 i~~~s~~~yn~~L~~~~~~--i~lfrifs~seEfk~~svr~~ek~el~~l~~~vpIpire~l~~p~akinvllq~yi 892 (1674)
T KOG0951|consen 818 ITHGSMATYNELLKETMSE--IDLFRIFSKSEEFKYVSVREEEKMELAKLLERVPIPIRENLDEPSAKINVLLQSYI 892 (1674)
T ss_pred eecchHHHHHhhhhhhhcc--chhhhhhhhccccccCCccHHHHHHhhhhcccCCcCchhccccchHHHHHHHHHHH
Confidence 9766655444443333333 4578888899999888877777666665433 34578888888864 344
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-24 Score=284.53 Aligned_cols=195 Identities=19% Similarity=0.183 Sum_probs=136.5
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHH--HHhccCceEEEeCCc-ccceeEEecc
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFH--TYFNRIAKIIKVPGR-LYPIQLEYHP 392 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~--~~f~~~~~vi~v~gr-~~pv~v~~~~ 392 (1417)
.+.+++++||||+|. . ++ .....+...+++.++++||||+....+. .....+..++..+.. ..+++.....
T Consensus 719 ~~~~L~lLVIDEahr-f---G~--~~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~ 792 (1147)
T PRK10689 719 KWKDLGLLIVDEEHR-F---GV--RHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVRE 792 (1147)
T ss_pred CHhhCCEEEEechhh-c---ch--hHHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEe
Confidence 467899999999993 2 11 1233445567789999999998655333 222234555544322 2333322211
Q ss_pred ccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHH
Q psy3476 393 IVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRV 472 (1417)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v 472 (1417)
. +. . .+...+...+ ..+|+++||||+++.++.+++.|.+.. ++..+..+||+|++++|.++
T Consensus 793 ~-----------~~--~-~~k~~il~el--~r~gqv~vf~n~i~~ie~la~~L~~~~---p~~~v~~lHG~m~q~eRe~i 853 (1147)
T PRK10689 793 Y-----------DS--L-VVREAILREI--LRGGQVYYLYNDVENIQKAAERLAELV---PEARIAIGHGQMRERELERV 853 (1147)
T ss_pred c-----------Cc--H-HHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhC---CCCcEEEEeCCCCHHHHHHH
Confidence 0 00 0 1112222222 236899999999999999999998743 45789999999999999999
Q ss_pred hccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEec
Q psy3476 473 FHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLY 551 (1417)
Q Consensus 473 ~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~ 551 (1417)
+..|++|+.+|||||+++|+|||||++++||. +++.. | +-+++.||+||+||.| .|.||.++
T Consensus 854 m~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi--------~~ad~----f-----glaq~~Qr~GRvGR~g~~g~a~ll~ 916 (1147)
T PRK10689 854 MNDFHHQRFNVLVCTTIIETGIDIPTANTIII--------ERADH----F-----GLAQLHQLRGRVGRSHHQAYAWLLT 916 (1147)
T ss_pred HHHHHhcCCCEEEECchhhcccccccCCEEEE--------ecCCC----C-----CHHHHHHHhhccCCCCCceEEEEEe
Confidence 99999999999999999999999999999984 22211 1 2245779999999999 79999887
Q ss_pred C
Q psy3476 552 S 552 (1417)
Q Consensus 552 t 552 (1417)
.
T Consensus 917 ~ 917 (1147)
T PRK10689 917 P 917 (1147)
T ss_pred C
Confidence 4
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-26 Score=297.52 Aligned_cols=136 Identities=32% Similarity=0.422 Sum_probs=130.8
Q ss_pred hhhhHHHhhhccccccCCCcccccccHHHHhhhhcCCccchhhcchHHHHHHHHHhcCCCcccCCCCCCCCccchHHHHH
Q psy3476 795 EEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVR 874 (1417)
Q Consensus 795 ~s~~~~~qR~~~agR~~pG~CyRLyt~~~~~~l~~~~~PEI~r~~L~~~vL~lk~~g~~~~~~f~~l~~P~~~~l~~A~~ 874 (1417)
+|++.+.||+|||||++||+||||||+++|+.|+++++|||+|+||++++|.+++||+.++.+|+|+||||..++.+|++
T Consensus 312 iSkasa~QR~GRaGR~~~G~cyrL~t~~~~~~l~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~~~ld~P~~~~~~~A~~ 391 (812)
T PRK11664 312 ISQASMTQRAGRAGRLEPGICLHLYSKEQAERAAAQSEPEILHSDLSGLLLELLQWGCHDPAQLSWLDQPPAAALAAAKR 391 (812)
T ss_pred echhhhhhhccccCCCCCcEEEEecCHHHHhhCccCCCCceeccchHHHHHHHHHcCCCCHHhCCCCCCCCHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccccccccccchhhhhcccCCCCccccchhhhcccccchh--hHHHHHHhhccc
Q psy3476 875 SLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQID--TMLLLDLALNFG 930 (1417)
Q Consensus 875 ~L~~lgald~~~~lT~lG~~l~~lPvdp~lak~Ll~~~~~~cl~--~~l~i~a~ls~~ 930 (1417)
.|+.+||||++|+||++|+.|+.||+||++||||+.|..+||.. .++.+||+|+.+
T Consensus 392 ~L~~lgald~~g~lT~~G~~m~~lp~~Prla~~ll~a~~~~~~~l~~a~~laall~e~ 449 (812)
T PRK11664 392 LLQQLGALDGQGRLTARGRKMAALGNDPRLAAMLVAAKEDDEAALATAAKLAAILEEP 449 (812)
T ss_pred HHHHCCCCCCCCCcCHHHHHHHhcCCchHHHHHHHHHHhcCchhhHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999764 788888888754
|
|
| >KOG0350|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.8e-25 Score=252.71 Aligned_cols=118 Identities=18% Similarity=0.305 Sum_probs=104.1
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEE
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFV 502 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~V 502 (1417)
....++|+|+++.+.+.+++..|.-.. ...+..+-.+.|+++...|.+.++.|..|.+.|+||||+++||||+.+|+.|
T Consensus 427 ~k~~r~lcf~~S~~sa~Rl~~~L~v~~-~~~~~~~s~~t~~l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~V 505 (620)
T KOG0350|consen 427 NKLNRTLCFVNSVSSANRLAHVLKVEF-CSDNFKVSEFTGQLNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNV 505 (620)
T ss_pred hhcceEEEEecchHHHHHHHHHHHHHh-ccccchhhhhhhhhhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceE
Confidence 345689999999999999999987322 2355677789999999999999999999999999999999999999999999
Q ss_pred EcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHHh
Q psy3476 503 VDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLL 559 (1417)
Q Consensus 503 IdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~l 559 (1417)
|| ||+|.....|+ ||+||+||.| .|.||.+.+..+...|
T Consensus 506 IN--------Yd~P~~~ktyV----------HR~GRTARAgq~G~a~tll~~~~~r~F 545 (620)
T KOG0350|consen 506 IN--------YDPPASDKTYV----------HRAGRTARAGQDGYAITLLDKHEKRLF 545 (620)
T ss_pred ee--------cCCCchhhHHH----------HhhcccccccCCceEEEeeccccchHH
Confidence 99 99998887777 9999999999 7999999988765543
|
|
| >KOG0341|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-25 Score=247.67 Aligned_cols=204 Identities=20% Similarity=0.294 Sum_probs=151.7
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCH--HHHHHHhccCceEEEeCCcccceeEEecccc
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINI--ELFHTYFNRIAKIIKVPGRLYPIQLEYHPIV 394 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~--~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~ 394 (1417)
|.-.+++.+|||| |+++.+|...+-.++.......|.++||||++. +.|++----.+..+. -||.-.-......
T Consensus 324 Ld~CRyL~lDEAD-RmiDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvN-VGRAGAAsldViQ-- 399 (610)
T KOG0341|consen 324 LDACRYLTLDEAD-RMIDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVN-VGRAGAASLDVIQ-- 399 (610)
T ss_pred HHHHHHhhhhhHH-HHhhccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEe-cccccccchhHHH--
Confidence 3345678999999 999999999998888888889999999999973 333332111112222 2332111110000
Q ss_pred ccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhc
Q psy3476 395 ELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFH 474 (1417)
Q Consensus 395 ~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~ 474 (1417)
...+.+. ...+-.+.+.+.+ ...++|||+..+.+++.+.++|-- .+..+..+|||-.+++|....+
T Consensus 400 evEyVkq--------EaKiVylLeCLQK-T~PpVLIFaEkK~DVD~IhEYLLl-----KGVEavaIHGGKDQedR~~ai~ 465 (610)
T KOG0341|consen 400 EVEYVKQ--------EAKIVYLLECLQK-TSPPVLIFAEKKADVDDIHEYLLL-----KGVEAVAIHGGKDQEDRHYAIE 465 (610)
T ss_pred HHHHHHh--------hhhhhhHHHHhcc-CCCceEEEeccccChHHHHHHHHH-----ccceeEEeecCcchhHHHHHHH
Confidence 0011111 0111222333332 245899999999999999999865 7889999999999999999999
Q ss_pred cCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCH
Q psy3476 475 YAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSE 553 (1417)
Q Consensus 475 ~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~ 553 (1417)
.|+.|+..|+|||++|+.|+|+|+|.+||| ||.|..+..|+ ||+||+||.| .|.+-.|+.+
T Consensus 466 afr~gkKDVLVATDVASKGLDFp~iqHVIN--------yDMP~eIENYV----------HRIGRTGRsg~~GiATTfINK 527 (610)
T KOG0341|consen 466 AFRAGKKDVLVATDVASKGLDFPDIQHVIN--------YDMPEEIENYV----------HRIGRTGRSGKTGIATTFINK 527 (610)
T ss_pred HHhcCCCceEEEecchhccCCCccchhhcc--------CCChHHHHHHH----------HHhcccCCCCCcceeeeeecc
Confidence 999999999999999999999999999999 99999888877 9999999999 6999988876
Q ss_pred HHH
Q psy3476 554 EQY 556 (1417)
Q Consensus 554 ~~~ 556 (1417)
...
T Consensus 528 ~~~ 530 (610)
T KOG0341|consen 528 NQE 530 (610)
T ss_pred cch
Confidence 543
|
|
| >KOG0334|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=3e-24 Score=267.71 Aligned_cols=317 Identities=19% Similarity=0.281 Sum_probs=234.9
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc---------CC-CcEEEecchHHHHHHHHHHHHHHHcccc
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA---------GF-QRIACTQPRRIACISLSKRVAYETLSQY 108 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~---------~~-~~i~~tqPrr~aa~~~a~rva~e~~~~~ 108 (1417)
+....|.+++.+|..++.+|.+|.||||||..+..+++.. +- .--++..|+|..|.|+.+.+.+-... +
T Consensus 387 k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~-l 465 (997)
T KOG0334|consen 387 KPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKL-L 465 (997)
T ss_pred CCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhh-c
Confidence 3345588899999999999999999999998765544422 11 13567789999999998877665443 5
Q ss_pred CCeEEEEEeecc------cccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhH
Q psy3476 109 SNLVGYQIRFEK------HRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPK 182 (1417)
Q Consensus 109 g~~vGy~ir~e~------~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (1417)
|..+-....... .....+.|++||+|..+..+... ||.
T Consensus 466 ~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n-------------------~gr----------------- 509 (997)
T KOG0334|consen 466 GIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCAN-------------------SGR----------------- 509 (997)
T ss_pred CceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhc-------------------CCc-----------------
Confidence 554422211111 12234789999999888765432 000
Q ss_pred HhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCC
Q psy3476 183 RRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPP 262 (1417)
Q Consensus 183 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~ 262 (1417)
T Consensus 510 -------------------------------------------------------------------------------- 509 (997)
T KOG0334|consen 510 -------------------------------------------------------------------------------- 509 (997)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHH
Q psy3476 263 LHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVI 342 (1417)
Q Consensus 263 ~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~ll 342 (1417)
-..|..+.++|+||+| |+++..|...+.
T Consensus 510 ---------------------------------------------------vtnlrR~t~lv~deaD-rmfdmgfePq~~ 537 (997)
T KOG0334|consen 510 ---------------------------------------------------VTNLRRVTYLVLDEAD-RMFDMGFEPQIT 537 (997)
T ss_pred ---------------------------------------------------cccccccceeeechhh-hhheeccCcccc
Confidence 0346678899999999 899999999988
Q ss_pred HHHhccCCCCcEEEEccCCCHH--HHHHHhccCceEEEeCCccccee-EEeccccccccccccCCCCChHHHHHHHHHhh
Q psy3476 343 KCLLHSTAEVKIILMSATINIE--LFHTYFNRIAKIIKVPGRLYPIQ-LEYHPIVELDRTKSEKLDPGPYIRILSIIDKK 419 (1417)
Q Consensus 343 k~l~~~r~~~qvIlmSATln~~--~~~~~f~~~~~vi~v~gr~~pv~-v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~ 419 (1417)
.++...+++.|.+++|||.+.. .++.-....+--+.+.++..-.. +... ...-......+.+++++|...
T Consensus 538 ~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~-------v~V~~~e~eKf~kL~eLl~e~ 610 (997)
T KOG0334|consen 538 RILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQV-------VRVCAIENEKFLKLLELLGER 610 (997)
T ss_pred hHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEE-------EEEecCchHHHHHHHHHHHHH
Confidence 8888899999999999999744 34433322222233344321110 0000 000111223456677777665
Q ss_pred CCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCe
Q psy3476 420 YPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGI 499 (1417)
Q Consensus 420 ~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V 499 (1417)
+ ..+++||||..++.+..+.+.|.+ .++.+..+||+.++.+|..+++.|++|..+++|||+++++|+|++++
T Consensus 611 ~---e~~~tiiFv~~qe~~d~l~~~L~~-----ag~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l 682 (997)
T KOG0334|consen 611 Y---EDGKTIIFVDKQEKADALLRDLQK-----AGYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKEL 682 (997)
T ss_pred h---hcCCEEEEEcCchHHHHHHHHHHh-----cCcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccc
Confidence 4 378999999999999999999987 67888889999999999999999999999999999999999999999
Q ss_pred EEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHH
Q psy3476 500 RFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYS 557 (1417)
Q Consensus 500 ~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~ 557 (1417)
-.||+ ||.|..+..|+ ||.||+||+| .|.||.|.++++..
T Consensus 683 ~Lvvn--------yd~pnh~edyv----------hR~gRTgragrkg~AvtFi~p~q~~ 723 (997)
T KOG0334|consen 683 ILVVN--------YDFPNHYEDYV----------HRVGRTGRAGRKGAAVTFITPDQLK 723 (997)
T ss_pred eEEEE--------cccchhHHHHH----------HHhcccccCCccceeEEEeChHHhh
Confidence 99999 99999988877 9999999999 69999999986554
|
|
| >KOG4284|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-24 Score=252.04 Aligned_cols=313 Identities=19% Similarity=0.203 Sum_probs=233.8
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHH-----cCCCcEEEecchHHHHHHHHHHHHHHHccccCCeEEEEE
Q psy3476 42 QYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ-----AGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQI 116 (1417)
Q Consensus 42 ~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile-----~~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy~i 116 (1417)
..|..++.++..+=.+||++..|+|||..+--..++ .....++++.|+|..|+|+-.-+.+--..--|-.+...|
T Consensus 50 kiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfI 129 (980)
T KOG4284|consen 50 KIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFI 129 (980)
T ss_pred chhhhhhhhhhcccceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEe
Confidence 346678888999989999999999999643222222 233467788899998999877654433222344444444
Q ss_pred eecc-----cccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhcccc
Q psy3476 117 RFEK-----HRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADN 191 (1417)
Q Consensus 117 r~e~-----~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 191 (1417)
.+.. ..-.+++|+++|||.+++....+
T Consensus 130 GGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~------------------------------------------------ 161 (980)
T KOG4284|consen 130 GGTAHKLDLIRLKQTRIVIGTPGRIAQLVELG------------------------------------------------ 161 (980)
T ss_pred cCchhhhhhhhhhhceEEecCchHHHHHHHhc------------------------------------------------
Confidence 4332 23357889999999988765433
Q ss_pred chhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCcccc
Q psy3476 192 AYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIVA 271 (1417)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~~~ 271 (1417)
T Consensus 162 -------------------------------------------------------------------------------- 161 (980)
T KOG4284|consen 162 -------------------------------------------------------------------------------- 161 (980)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccC-cchHHHHHHHHhccCC
Q psy3476 272 ADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLH-GDFLLGVIKCLLHSTA 350 (1417)
Q Consensus 272 ~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~-~d~ll~llk~l~~~r~ 350 (1417)
-...+.++++|+|||| ..++ ..|...+-+++..++.
T Consensus 162 ------------------------------------------~~n~s~vrlfVLDEAD-kL~~t~sfq~~In~ii~slP~ 198 (980)
T KOG4284|consen 162 ------------------------------------------AMNMSHVRLFVLDEAD-KLMDTESFQDDINIIINSLPQ 198 (980)
T ss_pred ------------------------------------------CCCccceeEEEeccHH-hhhchhhHHHHHHHHHHhcch
Confidence 0345678999999999 4555 5677777778888899
Q ss_pred CCcEEEEccCCC---HHHHHHHhccCceEEEeCCcc---cceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCC
Q psy3476 351 EVKIILMSATIN---IELFHTYFNRIAKIIKVPGRL---YPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTE 424 (1417)
Q Consensus 351 ~~qvIlmSATln---~~~~~~~f~~~~~vi~v~gr~---~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~ 424 (1417)
..|++.+|||.+ .+.+++|+ +++..|....+. +.++.++........ ....+...++.+.+.+..-+
T Consensus 199 ~rQv~a~SATYp~nLdn~Lsk~m-rdp~lVr~n~~d~~L~GikQyv~~~~s~nn------sveemrlklq~L~~vf~~ip 271 (980)
T KOG4284|consen 199 IRQVAAFSATYPRNLDNLLSKFM-RDPALVRFNADDVQLFGIKQYVVAKCSPNN------SVEEMRLKLQKLTHVFKSIP 271 (980)
T ss_pred hheeeEEeccCchhHHHHHHHHh-cccceeecccCCceeechhheeeeccCCcc------hHHHHHHHHHHHHHHHhhCc
Confidence 999999999995 44677777 667777766542 333333322211111 11123445666666666556
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEc
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVD 504 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VId 504 (1417)
-.+.||||+....++.++..|.. .++.+..+.|.|++.+|..+++..+.-..+|||+||..+||||-|.|+.|||
T Consensus 272 y~QAlVF~~~~sra~~~a~~L~s-----sG~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVN 346 (980)
T KOG4284|consen 272 YVQALVFCDQISRAEPIATHLKS-----SGLDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVN 346 (980)
T ss_pred hHHHHhhhhhhhhhhHHHHHhhc-----cCCCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEe
Confidence 67899999999999999999987 7899999999999999999999999999999999999999999999999999
Q ss_pred CCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHH
Q psy3476 505 SGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQ 555 (1417)
Q Consensus 505 sG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~ 555 (1417)
.|+|.+..+|. ||+|||||.| .|.++.++..+.
T Consensus 347 --------iD~p~d~eTY~----------HRIGRAgRFG~~G~aVT~~~~~~ 380 (980)
T KOG4284|consen 347 --------IDAPADEETYF----------HRIGRAGRFGAHGAAVTLLEDER 380 (980)
T ss_pred --------cCCCcchHHHH----------HHhhhcccccccceeEEEeccch
Confidence 99998888777 9999999999 699998875543
|
|
| >KOG0346|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.7e-24 Score=242.99 Aligned_cols=207 Identities=20% Similarity=0.279 Sum_probs=161.8
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCC--CHHHHHHHhccCceEEEeCCccccee--EEec
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATI--NIELFHTYFNRIAKIIKVPGRLYPIQ--LEYH 391 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATl--n~~~~~~~f~~~~~vi~v~gr~~pv~--v~~~ 391 (1417)
.+..++++|+|||| -.+.-++...+.+....+++..|.++||||+ |++.+.+.|..++.++.+.....|.. +...
T Consensus 167 ~~~~l~~LVvDEAD-LllsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Qy 245 (569)
T KOG0346|consen 167 YLDSLSFLVVDEAD-LLLSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQY 245 (569)
T ss_pred hhhheeeEEechhh-hhhhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceEE
Confidence 46678999999999 6677788888888888899999999999999 67888898877777777765544421 1111
Q ss_pred cccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHH
Q psy3476 392 PIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDR 471 (1417)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~ 471 (1417)
...+. +.+.+..+...+.-. .-.|++|||+|+.+.+..+.-.|.+ -++....|.|.||..-|..
T Consensus 246 ~v~cs--------e~DKflllyallKL~---LI~gKsliFVNtIdr~YrLkLfLeq-----FGiksciLNseLP~NSR~H 309 (569)
T KOG0346|consen 246 QVKCS--------EEDKFLLLYALLKLR---LIRGKSLIFVNTIDRCYRLKLFLEQ-----FGIKSCILNSELPANSRCH 309 (569)
T ss_pred EEEec--------cchhHHHHHHHHHHH---HhcCceEEEEechhhhHHHHHHHHH-----hCcHhhhhcccccccchhh
Confidence 11111 111122222221111 1268999999999999999888887 5678889999999999999
Q ss_pred HhccCCCCCceEEEecc-----------------------------------hhhccCCcCCeEEEEcCCcccceecccC
Q psy3476 472 VFHYAPEGLRKCIVSTN-----------------------------------IAETSITIDGIRFVVDSGKVKEMSYDVT 516 (1417)
Q Consensus 472 v~~~f~~G~rkVLVATn-----------------------------------Iae~GIdIP~V~~VIdsG~~k~~~yD~~ 516 (1417)
|++.|..|...|||||| -++||||+..|..||| ||.|
T Consensus 310 ii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlN--------FD~P 381 (569)
T KOG0346|consen 310 IIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLN--------FDFP 381 (569)
T ss_pred HHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeee--------cCCC
Confidence 99999999999999999 2458999999999999 9999
Q ss_pred CCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHH
Q psy3476 517 AKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYS 557 (1417)
Q Consensus 517 ~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~ 557 (1417)
....+|+ ||+||++|.+ +|.+..++.+.+..
T Consensus 382 ~t~~sYI----------HRvGRTaRg~n~GtalSfv~P~e~~ 413 (569)
T KOG0346|consen 382 ETVTSYI----------HRVGRTARGNNKGTALSFVSPKEEF 413 (569)
T ss_pred CchHHHH----------HhccccccCCCCCceEEEecchHHh
Confidence 9888887 9999999999 89999998776543
|
|
| >KOG0921|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.4e-26 Score=274.05 Aligned_cols=585 Identities=9% Similarity=-0.105 Sum_probs=406.6
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC-------CCcEEEecchHHHHHHHHHHHHH
Q psy3476 30 KIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG-------FQRIACTQPRRIACISLSKRVAY 102 (1417)
Q Consensus 30 ~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~-------~~~i~~tqPrr~aa~~~a~rva~ 102 (1417)
.|+..+.-+|+.++.++|++.+..+.+.++.+.||||||++.+++++|.- .+.++.++||+..|...+.+++-
T Consensus 397 ~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~ 476 (1282)
T KOG0921|consen 397 IIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIM 476 (1282)
T ss_pred eEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhccccccccccccccccccccee
Confidence 45556777999999999999999999999999999999999999999853 36799999999999999999999
Q ss_pred HHccccCCeEEEEEeeccc-ccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhh
Q psy3476 103 ETLSQYSNLVGYQIRFEKH-RREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAP 181 (1417)
Q Consensus 103 e~~~~~g~~vGy~ir~e~~-~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (1417)
+.+..++...+|.++++.. .-....+-++|++.|++.+.+++
T Consensus 477 fctvgvllr~~e~glrg~sh~i~deiherdv~~dfll~~lr~m------------------------------------- 519 (1282)
T KOG0921|consen 477 FCTVGVLLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLREM------------------------------------- 519 (1282)
T ss_pred eeccchhhhhhhhcccccccccchhhhhhccchHHHHHHHHhh-------------------------------------
Confidence 9998888888887765543 34556778999999998887651
Q ss_pred HHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCC
Q psy3476 182 KRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISP 261 (1417)
Q Consensus 182 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~ 261 (1417)
-+..+++.|+.|+|++++|++.-.+
T Consensus 520 -----------------------------------------------------~~ty~dl~v~lmsatIdTd~f~~~f-- 544 (1282)
T KOG0921|consen 520 -----------------------------------------------------ISTYRDLRVVLMSATIDTDLFTNFF-- 544 (1282)
T ss_pred -----------------------------------------------------hccchhhhhhhhhcccchhhhhhhh--
Confidence 1345788999999999999753221
Q ss_pred CCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcc-hH-H
Q psy3476 262 PLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGD-FL-L 339 (1417)
Q Consensus 262 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d-~l-l 339 (1417)
. .+-.+ ++|.|++... |. .
T Consensus 545 --------------~------------------------------------------~~p~~---~~~grt~pvq~F~le 565 (1282)
T KOG0921|consen 545 --------------S------------------------------------------SIPDV---TVHGRTFPVQSFFLE 565 (1282)
T ss_pred --------------c------------------------------------------cccce---eeccccccHHHHHHH
Confidence 1 11111 8898877653 22 2
Q ss_pred HHHHHHhccCCCCcEEEEccCCCHHHHHHHhcc--CceEEEeCCccccee--EEeccccccc-c-ccccCCCCChHHHHH
Q psy3476 340 GVIKCLLHSTAEVKIILMSATINIELFHTYFNR--IAKIIKVPGRLYPIQ--LEYHPIVELD-R-TKSEKLDPGPYIRIL 413 (1417)
Q Consensus 340 ~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~--~~~vi~v~gr~~pv~--v~~~~~~~~~-~-~~~~~~~~~~~~~il 413 (1417)
.++.-+.. +-|+|-..+ .+|.. ..+...-.++-.... -.|......+ + ...........+.++
T Consensus 566 d~~~~~~~--------vp~~~~~~k---~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~se~d~~f~l~Eal~ 634 (1282)
T KOG0921|consen 566 DIIQMTQF--------VPSEPSQKK---RKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMSRLSEKDIPFGLIEALL 634 (1282)
T ss_pred Hhhhhhhc--------cCCCcCccc---hhhcccccCchhhhcccccccccChhhcchhhhhhhcchhhcchhHHHHHHH
Confidence 22221111 113332111 11110 011111111100000 0000000000 0 000011111122222
Q ss_pred HHHH------hhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhh-ccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEe
Q psy3476 414 SIID------KKYPRTERGDVLIFMSGISEISSIVRAAQEYNE-KSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS 486 (1417)
Q Consensus 414 ~~l~------~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~-~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVA 486 (1417)
..+. ..+.-.+++.+|+|++++.-.......+.++-- ......+.+.|+.+...++..+++....+.++++..
T Consensus 635 ~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv~kii~stniaetsi 714 (1282)
T KOG0921|consen 635 NDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGVTKIILSTNIAETSI 714 (1282)
T ss_pred hhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccccccccccceeeEee
Confidence 2211 111124678999999999988888777765421 124456788899999999999999999999999999
Q ss_pred cchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHHHhhccCCCc
Q psy3476 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPE 566 (1417)
Q Consensus 487 TnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~~l~~~~~pE 566 (1417)
|+..++.|.+-++.+|++++..+.+.+-....++.+...|-+.....||.||++|...+.||.+++...+..|...+.+|
T Consensus 715 Tidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f~lcs~arF~~l~~~~t~em~r~plhe 794 (1282)
T KOG0921|consen 715 TIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCFHLCSRARFEALEDHGTAEMFRTPLHE 794 (1282)
T ss_pred eecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccccccHHHHHHHHHhcCcHhhhcCccHH
Confidence 99999999999999999999999998888888888999999999999999999999999999999999999999999999
Q ss_pred ccccChHHHHHHHHhhCCCCCcCCC--CCCCCCcchhHHHHHHHHhcCCCCCCC--CcChhhhhccCCCCChhhHHHHHh
Q psy3476 567 IRRVSIDSLLLSLVCMGLGDVRKFP--FLEAPPAENIESSVRSLTQHGAIDSKE--RVTSLGRFLSDLPVDIPLGKMLVF 642 (1417)
Q Consensus 567 I~r~~L~~~lL~lk~lgi~~~~~f~--~l~pP~~~~l~~Al~~L~~lGaId~~~--~lT~LG~~ls~lpldp~lak~Ll~ 642 (1417)
|-++.....++.++.+-...+..++ .+.+|+...... ..|...+.++..+ .+|.+++.....++.|..+++...
T Consensus 795 malTikll~l~SI~~fl~kal~~~p~dav~e~e~~l~~m--~~ld~n~elt~lg~~la~l~iep~~~k~~~lg~~~g~~~ 872 (1282)
T KOG0921|consen 795 IALTIKLLRLGSIGEFLGKALQPPPYDAVIEAEAVLREM--GALDANDELTPLGRMLARLPIEPRIGKMMILGTALGAGS 872 (1282)
T ss_pred HHhhHHHHHhhhHHHHHhhccCCCchhhccCchHHHHHh--hhhhccCcccchhhhhhhccCcccccceeeechhhccch
Confidence 9988777666666655445555565 355555554443 3444444444444 589999999999999999999888
Q ss_pred hhccCChhhHHHHhhhccCCCccccCCCCChhHHHHHhhcccC-CCChHHHHHHHHHHHHhhhhhchHHHHHHHcCCCHH
Q psy3476 643 GSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESN-HGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQ 721 (1417)
Q Consensus 643 ~~~f~cle~vl~IaA~Lsv~~~F~~~~~~~~~~~~~r~~f~~~-~sD~ltlln~f~~w~~~~~~~~~~~~WC~~~~L~~~ 721 (1417)
++.+-..+....++++-....+|...- ....-+..+|+.. .+||.+.+..+..|.-+..+++.-..||..+-+..-
T Consensus 873 ~m~~~as~~s~~~~~~~~~~~~~rl~g---~q~~~~g~kfsdhva~~~v~q~~r~~~q~ga~~e~efc~r~~l~~~~~~~ 949 (1282)
T KOG0921|consen 873 VMCDVASAMSFPTPFVPREKHHSRLSG---TQRKFAGNKFSDHVAIVSVIQGYREAVQMGAAAEREFCERYSLSNPVLKM 949 (1282)
T ss_pred hhhhhhccccccccccccccccccccc---chhhccccccccchhhhhhhhhhHHHhhhhhhhhhhHhHhhhhcchhhhh
Confidence 776554455555555544455554332 2223456677644 699999999999999876666777889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCc-----CCCCCCCChhHHHHHHhcCchHHHHHHHhhhccccccccccccccc
Q psy3476 722 RFYEVTKLRSQFKQVLGDSGLIT-----DIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADN 790 (1417)
Q Consensus 722 ~L~ei~~lr~QL~~iL~~~gl~~-----~~~~~~~~~~s~~ral~~G~~~~L~~l~~~~~~~~~r~rk~l~~~~ 790 (1417)
+...-+++..||+ +|..-+.+. ...+++.+.+-....|..+.+++.+..+ +|||+|..+.
T Consensus 950 t~~a~~ql~d~L~-q~~fpe~~~~~~~v~~ng~d~~l~~~~~lL~~~lypn~~~y~--------ekrkvLtTe~ 1014 (1282)
T KOG0921|consen 950 TDGARRQLIDVLR-QCSFPEDILFDISVNVNGPDRELNLMRSLLVMALYPNVAYYV--------EKRKVLTTEQ 1014 (1282)
T ss_pred hhhhHHHHHHHHH-hccCccccccceeeccCCCCchhHHHHHHHHhhcCCccceec--------cceeEEeecc
Confidence 9999999999999 776555532 2234444454555556666666666553 5677777544
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.5e-23 Score=239.53 Aligned_cols=120 Identities=23% Similarity=0.307 Sum_probs=99.5
Q ss_pred HHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEe-------cCCCCHHHHHHHhccCCCCCceEEEe
Q psy3476 414 SIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPL-------HSTLSLEEQDRVFHYAPEGLRKCIVS 486 (1417)
Q Consensus 414 ~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~L-------Hs~Ls~~eR~~v~~~f~~G~rkVLVA 486 (1417)
+.+.+.+...+...+|||.+-++.++.+.+.|.+.... ..+..+ ..||++.+|.++++.|+.|..+||||
T Consensus 355 eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~---~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVa 431 (542)
T COG1111 355 EILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIK---ARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVA 431 (542)
T ss_pred HHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCc---ceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEE
Confidence 33444444455678999999999999999999874322 111222 36899999999999999999999999
Q ss_pred cchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHH
Q psy3476 487 TNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEE 554 (1417)
Q Consensus 487 TnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~ 554 (1417)
|+|+|.|+|||++++||- |++..+.-..+ ||.||+||..+|.+|.|+++.
T Consensus 432 TSVgEEGLDIp~vDlVif--------YEpvpSeIR~I----------QR~GRTGR~r~Grv~vLvt~g 481 (542)
T COG1111 432 TSVGEEGLDIPEVDLVIF--------YEPVPSEIRSI----------QRKGRTGRKRKGRVVVLVTEG 481 (542)
T ss_pred cccccccCCCCcccEEEE--------ecCCcHHHHHH----------HhhCccccCCCCeEEEEEecC
Confidence 999999999999999998 99877655555 999999999999999999876
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-23 Score=253.78 Aligned_cols=201 Identities=22% Similarity=0.274 Sum_probs=151.8
Q ss_pred CccEEEEecCcccccCc-chHHHHHH--HHhccCCCCcEEEEccCCCHH---HHHHHhccCce-EEEe-CCcccceeEEe
Q psy3476 319 SYDVLVLDEIHERHLHG-DFLLGVIK--CLLHSTAEVKIILMSATINIE---LFHTYFNRIAK-IIKV-PGRLYPIQLEY 390 (1417)
Q Consensus 319 ~~~~VIlDEaHER~l~~-d~ll~llk--~l~~~r~~~qvIlmSATln~~---~~~~~f~~~~~-vi~v-~gr~~pv~v~~ 390 (1417)
.+.++||||||+-+-++ ||...+.. .+....+++.++.++||.+.. ++.+-+.-+.+ ++.. ..|+ .++|
T Consensus 131 ~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sfdRp---Ni~~ 207 (590)
T COG0514 131 PISLVAIDEAHCISQWGHDFRPDYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSFDRP---NLAL 207 (590)
T ss_pred CCceEEechHHHHhhcCCccCHhHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecCCCc---hhhh
Confidence 57899999999877776 78877754 344455689999999999754 44444432222 2221 1121 1111
Q ss_pred ccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHH
Q psy3476 391 HPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQD 470 (1417)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~ 470 (1417)
.-.... .+..+.. .+.+ ......++.||||.|++.++.+++.|.. .++.+..+||||+.++|.
T Consensus 208 ~v~~~~----------~~~~q~~-fi~~-~~~~~~~~GIIYc~sRk~~E~ia~~L~~-----~g~~a~~YHaGl~~~eR~ 270 (590)
T COG0514 208 KVVEKG----------EPSDQLA-FLAT-VLPQLSKSGIIYCLTRKKVEELAEWLRK-----NGISAGAYHAGLSNEERE 270 (590)
T ss_pred hhhhcc----------cHHHHHH-HHHh-hccccCCCeEEEEeeHHhHHHHHHHHHH-----CCCceEEecCCCCHHHHH
Confidence 100000 1122222 3332 1124467789999999999999999988 689999999999999999
Q ss_pred HHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEE
Q psy3476 471 RVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYR 549 (1417)
Q Consensus 471 ~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~ 549 (1417)
.+.+.|.++..+|+|||+.+.+|||.|||++||+ ||.|.++++|. |-+|||||.| |..|+.
T Consensus 271 ~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH--------~~lP~s~EsYy----------QE~GRAGRDG~~a~ail 332 (590)
T COG0514 271 RVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIH--------YDLPGSIESYY----------QETGRAGRDGLPAEAIL 332 (590)
T ss_pred HHHHHHhcCCCcEEEEeccccCccCCCCceEEEE--------ecCCCCHHHHH----------HHHhhccCCCCcceEEE
Confidence 9999999999999999999999999999999999 99998877777 9999999999 899999
Q ss_pred ecCHHHHH
Q psy3476 550 LYSEEQYS 557 (1417)
Q Consensus 550 L~t~~~~~ 557 (1417)
||++.+..
T Consensus 333 l~~~~D~~ 340 (590)
T COG0514 333 LYSPEDIR 340 (590)
T ss_pred eeccccHH
Confidence 99988865
|
|
| >KOG0327|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-23 Score=236.25 Aligned_cols=207 Identities=24% Similarity=0.366 Sum_probs=159.9
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHH--HHHHHhccCceEEEeCCcccceeEEecccc
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIE--LFHTYFNRIAKIIKVPGRLYPIQLEYHPIV 394 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~--~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~ 394 (1417)
...++++|+||++|+ +.-+|...+...+...+++.|++++|||++.+ .+.+-|..++..+.+.... .+..+....
T Consensus 167 ~~~iKmfvlDEaDEm-Ls~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vkk~~--ltl~gikq~ 243 (397)
T KOG0327|consen 167 TDGIKMFVLDEADEM-LSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVKKDE--LTLEGIKQF 243 (397)
T ss_pred ccceeEEeecchHhh-hccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEecchh--hhhhheeee
Confidence 446889999999964 56679999999999999999999999999644 5566665555555444322 111111000
Q ss_pred ccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhc
Q psy3476 395 ELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFH 474 (1417)
Q Consensus 395 ~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~ 474 (1417)
.....+.+ ++..+...+. .-.+.+|||||++.+..+...|.. .++.+..+|+.|.+.+|..+..
T Consensus 244 ~i~v~k~~---------k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~-----~~~~~s~~~~d~~q~~R~~~~~ 307 (397)
T KOG0327|consen 244 YINVEKEE---------KLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRA-----HGFTVSAIHGDMEQNERDTLMR 307 (397)
T ss_pred eeeccccc---------cccHHHHHHH--hhhcceEEecchhhHHHHHHHHhh-----CCceEEEeecccchhhhhHHHH
Confidence 00001111 2222233332 356899999999999999999966 6899999999999999999999
Q ss_pred cCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCH
Q psy3476 475 YAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSE 553 (1417)
Q Consensus 475 ~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~ 553 (1417)
.|+.|..+|+|+|+.+++|+|+-.+..||+ ||.|.+...|. ||+||+||.| +|.++.++++
T Consensus 308 ef~~gssrvlIttdl~argidv~~~slvin--------ydlP~~~~~yi----------hR~gr~gr~grkg~~in~v~~ 369 (397)
T KOG0327|consen 308 EFRSGSSRVLITTDLLARGIDVQQVSLVVN--------YDLPARKENYI----------HRIGRAGRFGRKGVAINFVTE 369 (397)
T ss_pred HhhcCCceEEeeccccccccchhhcceeee--------eccccchhhhh----------hhcccccccCCCceeeeeehH
Confidence 999999999999999999999999999999 99998877776 9999999999 8999999999
Q ss_pred HHHHHhh
Q psy3476 554 EQYSLLA 560 (1417)
Q Consensus 554 ~~~~~l~ 560 (1417)
++...+.
T Consensus 370 ~d~~~lk 376 (397)
T KOG0327|consen 370 EDVRDLK 376 (397)
T ss_pred hhHHHHH
Confidence 8876654
|
|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-22 Score=249.61 Aligned_cols=100 Identities=15% Similarity=0.143 Sum_probs=87.9
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEec-chhhccCCcCCeEEE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST-NIAETSITIDGIRFV 502 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVAT-nIae~GIdIP~V~~V 502 (1417)
.++++|||+...++++.+++.|++ .+..+..+||+++.++|..+++.|++|...||||| +++++|+|+|+++.|
T Consensus 343 ~~~~~lV~~~~~~h~~~L~~~L~~-----~g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~v 417 (501)
T PHA02558 343 KGENTFVMFKYVEHGKPLYEMLKK-----VYDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHV 417 (501)
T ss_pred cCCCEEEEEEEHHHHHHHHHHHHH-----cCCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEE
Confidence 457899999999999999999987 56789999999999999999999999999999998 899999999999999
Q ss_pred EcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCe
Q psy3476 503 VDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV 546 (1417)
Q Consensus 503 IdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~ 546 (1417)
|. ++++.. +..+.||+||+||.++|+
T Consensus 418 Il--------~~p~~s----------~~~~~QriGR~~R~~~~K 443 (501)
T PHA02558 418 IF--------AHPSKS----------KIIVLQSIGRVLRKHGSK 443 (501)
T ss_pred EE--------ecCCcc----------hhhhhhhhhccccCCCCC
Confidence 97 666553 445559999999998654
|
|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.4e-22 Score=236.21 Aligned_cols=187 Identities=16% Similarity=0.231 Sum_probs=119.2
Q ss_pred CCCCccEEEEecCcccccCcc-hHH---HHHHHHhccCCCCcEEEEccCCCHHHHH---HHhccCceEEEeCCcc--c--
Q psy3476 316 FLSSYDVLVLDEIHERHLHGD-FLL---GVIKCLLHSTAEVKIILMSATINIELFH---TYFNRIAKIIKVPGRL--Y-- 384 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d-~ll---~llk~l~~~r~~~qvIlmSATln~~~~~---~~f~~~~~vi~v~gr~--~-- 384 (1417)
++.++++||+||+|....+.. .+. .....+.......++|+||||++..... +......+++.+.|+. +
T Consensus 142 ~~~~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~ 221 (357)
T TIGR03158 142 FYTKFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPD 221 (357)
T ss_pred hhcCCCEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCC
Confidence 467899999999996554331 222 2233333233457999999999754222 2210135666666661 1
Q ss_pred ------------------ceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHH
Q psy3476 385 ------------------PIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQ 446 (1417)
Q Consensus 385 ------------------pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~ 446 (1417)
+++..+.+.. ...........+.+.+.+....++++||||+|++.++.+++.|+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~--------~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~ 293 (357)
T TIGR03158 222 NPELEADNKTQSFRPVLPPVELELIPAP--------DFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQ 293 (357)
T ss_pred ChhhhccccccccceeccceEEEEEeCC--------chhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHh
Confidence 1222222100 00001122334444444433456799999999999999999998
Q ss_pred hhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceee
Q psy3476 447 EYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFW 526 (1417)
Q Consensus 447 ~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ 526 (1417)
+.. .++.+..+||.+++.+|.++. +..|+|||+++|+|||||++. ||. + +.
T Consensus 294 ~~~---~~~~~~~l~g~~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~~-vi~---------~-p~--------- 344 (357)
T TIGR03158 294 QQG---LGDDIGRITGFAPKKDRERAM------QFDILLGTSTVDVGVDFKRDW-LIF---------S-AR--------- 344 (357)
T ss_pred hhC---CCceEEeeecCCCHHHHHHhc------cCCEEEEecHHhcccCCCCce-EEE---------C-CC---------
Confidence 621 245788999999999997653 578999999999999999874 442 2 32
Q ss_pred cCHhhHHhhcCcCC
Q psy3476 527 ISKASAEQRKGRAG 540 (1417)
Q Consensus 527 ISkasa~QR~GRAG 540 (1417)
+.++|.||+||+|
T Consensus 345 -~~~~yiqR~GR~g 357 (357)
T TIGR03158 345 -DAAAFWQRLGRLG 357 (357)
T ss_pred -CHHHHhhhcccCC
Confidence 3456669999998
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >KOG0354|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-22 Score=246.28 Aligned_cols=127 Identities=19% Similarity=0.332 Sum_probs=100.5
Q ss_pred HHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhc--cCCcEEEEe----cCCCCHHHHHHHhccCCCCCceEE
Q psy3476 411 RILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEK--SQGWIVLPL----HSTLSLEEQDRVFHYAPEGLRKCI 484 (1417)
Q Consensus 411 ~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~--~~~~~V~~L----Hs~Ls~~eR~~v~~~f~~G~rkVL 484 (1417)
.+.+.+.+.+...+...+|||+.+++.+..+...|.+.... .+.+-+..- -.+|++.+|.++++.|++|..+||
T Consensus 399 ~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvL 478 (746)
T KOG0354|consen 399 KLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVL 478 (746)
T ss_pred HHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEE
Confidence 34444444454556678999999999999999998753221 111222211 248999999999999999999999
Q ss_pred EecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHH
Q psy3476 485 VSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQY 556 (1417)
Q Consensus 485 VATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~ 556 (1417)
|||+|+|.|+||+.++.||- ||..++....+ ||+|| ||...|.|+.|++..+.
T Consensus 479 VATSV~EEGLDI~ec~lVIc--------Yd~~snpIrmI----------QrrGR-gRa~ns~~vll~t~~~~ 531 (746)
T KOG0354|consen 479 VATSVAEEGLDIGECNLVIC--------YDYSSNPIRMV----------QRRGR-GRARNSKCVLLTTGSEV 531 (746)
T ss_pred EEecchhccCCcccccEEEE--------ecCCccHHHHH----------HHhcc-ccccCCeEEEEEcchhH
Confidence 99999999999999999998 99888766666 99999 99999999999985443
|
|
| >KOG0948|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-23 Score=246.47 Aligned_cols=324 Identities=18% Similarity=0.192 Sum_probs=236.8
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC--CCcEEEecchHHHHHHHHHHHHHHHccccCCeEEEEEe
Q psy3476 40 VAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG--FQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117 (1417)
Q Consensus 40 ~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~--~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy~ir 117 (1417)
+.++|...+..+..++.|+|+|.|.+|||..+-..|...- .+|+++|.|-+.+..|=.+.+-.|++ .||.. .
T Consensus 130 LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~-----DVGLM-T 203 (1041)
T KOG0948|consen 130 LDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFK-----DVGLM-T 203 (1041)
T ss_pred cCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhc-----cccee-e
Confidence 4679999999999999999999999999976555554432 37999999998887887777777763 35552 3
Q ss_pred ecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhccccchhhhh
Q psy3476 118 FEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIEE 197 (1417)
Q Consensus 118 ~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 197 (1417)
++-..++....++||+.+|..++-++
T Consensus 204 GDVTInP~ASCLVMTTEILRsMLYRG------------------------------------------------------ 229 (1041)
T KOG0948|consen 204 GDVTINPDASCLVMTTEILRSMLYRG------------------------------------------------------ 229 (1041)
T ss_pred cceeeCCCCceeeeHHHHHHHHHhcc------------------------------------------------------
Confidence 34456788899999999988877543
Q ss_pred HHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCcccccccccc
Q psy3476 198 EEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIVAADYFLS 277 (1417)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~~~~~~~l~ 277 (1417)
T Consensus 230 -------------------------------------------------------------------------------- 229 (1041)
T KOG0948|consen 230 -------------------------------------------------------------------------------- 229 (1041)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEE
Q psy3476 278 SYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILM 357 (1417)
Q Consensus 278 ~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlm 357 (1417)
..-+..+..||+||+| .+-+.+-.-.+...+..++.+.+.|++
T Consensus 230 ------------------------------------SEvmrEVaWVIFDEIH-YMRDkERGVVWEETIIllP~~vr~VFL 272 (1041)
T KOG0948|consen 230 ------------------------------------SEVMREVAWVIFDEIH-YMRDKERGVVWEETIILLPDNVRFVFL 272 (1041)
T ss_pred ------------------------------------chHhheeeeEEeeeeh-hccccccceeeeeeEEeccccceEEEE
Confidence 0234567889999999 222222222223345567889999999
Q ss_pred ccCC-CHHHHHHHhc----cCceEEEeCCcccceeEEecccccccc----ccccCCCCC---------------------
Q psy3476 358 SATI-NIELFHTYFN----RIAKIIKVPGRLYPIQLEYHPIVELDR----TKSEKLDPG--------------------- 407 (1417)
Q Consensus 358 SATl-n~~~~~~~f~----~~~~vi~v~gr~~pv~v~~~~~~~~~~----~~~~~~~~~--------------------- 407 (1417)
|||+ |+..|++|.. .+|.++..+.|+.|++.+..|.-.... .....+..+
T Consensus 273 SATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~~~~ 352 (1041)
T KOG0948|consen 273 SATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGKKKA 352 (1041)
T ss_pred eccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCcccccc
Confidence 9999 7999999985 489999999999999866444221110 000001111
Q ss_pred -----------------hHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhh---------------------
Q psy3476 408 -----------------PYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYN--------------------- 449 (1417)
Q Consensus 408 -----------------~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~--------------------- 449 (1417)
.+.+++..+.. ....+||||+-++++|+..|..+.++.
T Consensus 353 ~~k~~kG~~~~~~~~~s~i~kiVkmi~~----~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~L 428 (1041)
T KOG0948|consen 353 NKKGRKGGTGGKGPGDSDIYKIVKMIME----RNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQL 428 (1041)
T ss_pred ccccccCCcCCCCCCcccHHHHHHHHHh----hcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhc
Confidence 12233333322 234589999999999999998875421
Q ss_pred -hcc------------CCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccC
Q psy3476 450 -EKS------------QGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVT 516 (1417)
Q Consensus 450 -~~~------------~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~ 516 (1417)
+.. ..-.+..+||||-+--++.|+-.|.+|-+||++||.+.+.|+|.|+-++|.- ..+.||..
T Consensus 429 seeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT----~~rKfDG~ 504 (1041)
T KOG0948|consen 429 SEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFT----AVRKFDGK 504 (1041)
T ss_pred ChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEe----eccccCCc
Confidence 000 1124667799999999999999999999999999999999999999998874 33345543
Q ss_pred CCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHH
Q psy3476 517 AKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEE 554 (1417)
Q Consensus 517 ~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~ 554 (1417)
...|||..+|.||.|||||.| .|+|+.++++.
T Consensus 505 ------~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDek 539 (1041)
T KOG0948|consen 505 ------KFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEK 539 (1041)
T ss_pred ------ceeeecccceEEecccccccCCCCCceEEEEecCc
Confidence 356999999999999999999 69999988754
|
|
| >KOG0344|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.9e-23 Score=242.55 Aligned_cols=231 Identities=19% Similarity=0.249 Sum_probs=160.4
Q ss_pred ccchhhhhhccccccccccccCCCCccEEEEecCcccccCc-chHHHHHHHHhcc-CCCCcEEEEccCCC--HHHHHHHh
Q psy3476 295 DFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHG-DFLLGVIKCLLHS-TAEVKIILMSATIN--IELFHTYF 370 (1417)
Q Consensus 295 d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~-d~ll~llk~l~~~-r~~~qvIlmSATln--~~~~~~~f 370 (1417)
|++++||..+...--.-...-.++++.++|+||+| +.+.. .|...+-.++... .+++++-+||||++ ++.+++..
T Consensus 264 dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD-~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i 342 (593)
T KOG0344|consen 264 DILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEAD-LLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELI 342 (593)
T ss_pred HHHhcCHHHHHHHhcCCCccchhheeeeEeechHH-hhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHh
Confidence 55666666643210000111368899999999999 55555 5555555544433 47889999999994 56666655
Q ss_pred ccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhh
Q psy3476 371 NRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNE 450 (1417)
Q Consensus 371 ~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~ 450 (1417)
..+...+.+..+.-..+..-.... .... .......+.+.+... -..++|||+-+.+.+..+.+.|..
T Consensus 343 ~~~~~~vivg~~~sa~~~V~Qelv---F~gs---e~~K~lA~rq~v~~g----~~PP~lIfVQs~eRak~L~~~L~~--- 409 (593)
T KOG0344|consen 343 KSDLKRVIVGLRNSANETVDQELV---FCGS---EKGKLLALRQLVASG----FKPPVLIFVQSKERAKQLFEELEI--- 409 (593)
T ss_pred hccceeEEEecchhHhhhhhhhhe---eeec---chhHHHHHHHHHhcc----CCCCeEEEEecHHHHHHHHHHhhh---
Confidence 444444444433211100000000 0000 001122333344333 356899999999999999999852
Q ss_pred ccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHh
Q psy3476 451 KSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKA 530 (1417)
Q Consensus 451 ~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISka 530 (1417)
..++.|...||..++.+|+.++++|+.|++.|++||++++||+|+-+|+.||| ||.|....+|+
T Consensus 410 -~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VIn--------yD~p~s~~syi------- 473 (593)
T KOG0344|consen 410 -YDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVIN--------YDFPQSDLSYI------- 473 (593)
T ss_pred -ccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEe--------cCCCchhHHHH-------
Confidence 26789999999999999999999999999999999999999999999999999 99987655555
Q ss_pred hHHhhcCcCCCCC-CCeEEEecCHHHHHH
Q psy3476 531 SAEQRKGRAGRTG-PGVCYRLYSEEQYSL 558 (1417)
Q Consensus 531 sa~QR~GRAGR~g-~G~cy~L~t~~~~~~ 558 (1417)
||+||+||.| +|++|.+|++++...
T Consensus 474 ---hrIGRtgRag~~g~Aitfytd~d~~~ 499 (593)
T KOG0344|consen 474 ---HRIGRTGRAGRSGKAITFYTDQDMPR 499 (593)
T ss_pred ---HHhhccCCCCCCcceEEEeccccchh
Confidence 9999999999 799999999966543
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=253.18 Aligned_cols=110 Identities=23% Similarity=0.320 Sum_probs=96.9
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCC--------CCHHHHHHHhccCCCCCceEEEecchhhccC
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHST--------LSLEEQDRVFHYAPEGLRKCIVSTNIAETSI 494 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~--------Ls~~eR~~v~~~f~~G~rkVLVATnIae~GI 494 (1417)
.+++++||||++++.++.+++.|.. .++.+..+||. +++.+|..+++.|++|..+|+|||+++++|+
T Consensus 363 ~~~~kvlIF~~~~~t~~~L~~~L~~-----~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eGl 437 (773)
T PRK13766 363 NPDSRIIVFTQYRDTAEKIVDLLEK-----EGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEGL 437 (773)
T ss_pred CCCCeEEEEeCcHHHHHHHHHHHHh-----CCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCC
Confidence 4578999999999999999999965 55667777775 9999999999999999999999999999999
Q ss_pred CcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHH
Q psy3476 495 TIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQ 555 (1417)
Q Consensus 495 dIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~ 555 (1417)
|+|++++||+ ||++.+...+ .||+||+||.++|.+|.|+++..
T Consensus 438 di~~~~~VI~--------yd~~~s~~r~----------iQR~GR~gR~~~~~v~~l~~~~t 480 (773)
T PRK13766 438 DIPSVDLVIF--------YEPVPSEIRS----------IQRKGRTGRQEEGRVVVLIAKGT 480 (773)
T ss_pred CcccCCEEEE--------eCCCCCHHHH----------HHHhcccCcCCCCEEEEEEeCCC
Confidence 9999999999 9987655444 49999999999999999987543
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.5e-21 Score=242.69 Aligned_cols=167 Identities=19% Similarity=0.197 Sum_probs=123.8
Q ss_pred CcEEEEccCC--CHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEE
Q psy3476 352 VKIILMSATI--NIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429 (1417)
Q Consensus 352 ~qvIlmSATl--n~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iL 429 (1417)
.++.+||.|. ..+.|.+.+ +..++.+|... |+.-...|...... ....+..++..+.+.+ ..+.++|
T Consensus 360 ~kl~GmTGTa~~~~~Ef~~iY--~l~v~~IPt~k-p~~r~d~~d~i~~~------~~~K~~ai~~~i~~~~--~~~~pvL 428 (762)
T TIGR03714 360 NKLSGMTGTGKVAEKEFIETY--SLSVVKIPTNK-PIIRIDYPDKIYAT------LPEKLMATLEDVKEYH--ETGQPVL 428 (762)
T ss_pred chhcccCCCChhHHHHHHHHh--CCCEEEcCCCC-CeeeeeCCCeEEEC------HHHHHHHHHHHHHHHh--hCCCCEE
Confidence 4788999998 345677766 56677777532 22221111111000 0012334555554443 3467899
Q ss_pred EEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcC---------CeE
Q psy3476 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITID---------GIR 500 (1417)
Q Consensus 430 VFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP---------~V~ 500 (1417)
|||++++.++.+++.|.+ .++.+..+||.+.+.++..+..+++.| +|+||||+|+||+||| ++.
T Consensus 429 Ift~s~~~se~ls~~L~~-----~gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~v~~~GGL~ 501 (762)
T TIGR03714 429 LITGSVEMSEIYSELLLR-----EGIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKGVAELGGLA 501 (762)
T ss_pred EEECcHHHHHHHHHHHHH-----CCCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCccccccCCeE
Confidence 999999999999999987 678899999999999999999888887 7999999999999999 999
Q ss_pred EEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHH
Q psy3476 501 FVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQ 555 (1417)
Q Consensus 501 ~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~ 555 (1417)
+||+ |++|.... . .||+|||||.| ||.++.+++.++
T Consensus 502 vIit--------~~~ps~ri----------d-~qr~GRtGRqG~~G~s~~~is~eD 538 (762)
T TIGR03714 502 VIGT--------ERMENSRV----------D-LQLRGRSGRQGDPGSSQFFVSLED 538 (762)
T ss_pred EEEe--------cCCCCcHH----------H-HHhhhcccCCCCceeEEEEEccch
Confidence 9998 88876422 2 59999999999 899999988654
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.1e-21 Score=236.87 Aligned_cols=168 Identities=18% Similarity=0.225 Sum_probs=117.0
Q ss_pred CcEEEEccCCC--HHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEE
Q psy3476 352 VKIILMSATIN--IELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429 (1417)
Q Consensus 352 ~qvIlmSATln--~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iL 429 (1417)
.++.+||||.. .+.|.++++ ..++.+|...-.....+....... .......++..+.+.. ..+.++|
T Consensus 409 ~kl~GmTGTa~~~~~El~~~y~--l~vv~IPt~kp~~r~~~~~~v~~t-------~~~K~~aL~~~i~~~~--~~~~pvL 477 (656)
T PRK12898 409 LRLAGMTGTAREVAGELWSVYG--LPVVRIPTNRPSQRRHLPDEVFLT-------AAAKWAAVAARVRELH--AQGRPVL 477 (656)
T ss_pred HHHhcccCcChHHHHHHHHHHC--CCeEEeCCCCCccceecCCEEEeC-------HHHHHHHHHHHHHHHH--hcCCCEE
Confidence 37889999994 456777773 345555533211111111100000 0012333444444332 2346799
Q ss_pred EEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcC---CeE-----E
Q psy3476 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITID---GIR-----F 501 (1417)
Q Consensus 430 VFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP---~V~-----~ 501 (1417)
|||+|++.++.+++.|.+ .++.+..+||.++..++..+..++.. ..|+||||+|+||+||+ +|. +
T Consensus 478 Ift~t~~~se~L~~~L~~-----~gi~~~~Lhg~~~~rE~~ii~~ag~~--g~VlVATdmAgRGtDI~l~~~V~~~GGLh 550 (656)
T PRK12898 478 VGTRSVAASERLSALLRE-----AGLPHQVLNAKQDAEEAAIVARAGQR--GRITVATNMAGRGTDIKLEPGVAARGGLH 550 (656)
T ss_pred EEeCcHHHHHHHHHHHHH-----CCCCEEEeeCCcHHHHHHHHHHcCCC--CcEEEEccchhcccCcCCccchhhcCCCE
Confidence 999999999999999987 67899999999776666655555444 46999999999999999 776 9
Q ss_pred EEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHH
Q psy3476 502 VVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQ 555 (1417)
Q Consensus 502 VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~ 555 (1417)
||+ ||.|.+...|. ||+||+||.| +|.|+.+++.++
T Consensus 551 VI~--------~d~P~s~r~y~----------hr~GRTGRqG~~G~s~~~is~eD 587 (656)
T PRK12898 551 VIL--------TERHDSARIDR----------QLAGRCGRQGDPGSYEAILSLED 587 (656)
T ss_pred EEE--------cCCCCCHHHHH----------HhcccccCCCCCeEEEEEechhH
Confidence 999 88887655555 9999999999 899999998755
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.5e-21 Score=249.85 Aligned_cols=330 Identities=19% Similarity=0.201 Sum_probs=214.3
Q ss_pred hcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC----CcEEEecchHHHHHHHHHHHHHHHccccCC
Q psy3476 35 QNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF----QRIACTQPRRIACISLSKRVAYETLSQYSN 110 (1417)
Q Consensus 35 r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~----~~i~~tqPrr~aa~~~a~rva~e~~~~~g~ 110 (1417)
+..-.+|.||.++++.+.+++++||+.+||||||..+..+|++... .+.++.-|++.+|..-++|+.+... .+|.
T Consensus 66 ~g~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~-~~~~ 144 (851)
T COG1205 66 AGIERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELIS-DLPG 144 (851)
T ss_pred hccccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHH-hCCC
Confidence 4445589999999999999999999999999999998888887543 4677888988888888888876653 3443
Q ss_pred eEEEEE-----eeccc---ccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhH
Q psy3476 111 LVGYQI-----RFEKH---RREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPK 182 (1417)
Q Consensus 111 ~vGy~i-----r~e~~---~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (1417)
.|+..+ ..+.+ .....+|++.++.||-..+...
T Consensus 145 ~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~--------------------------------------- 185 (851)
T COG1205 145 KVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRN--------------------------------------- 185 (851)
T ss_pred cceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccC---------------------------------------
Confidence 343322 00111 1334556665555555443322
Q ss_pred HhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCC
Q psy3476 183 RRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPP 262 (1417)
Q Consensus 183 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~ 262 (1417)
+.++
T Consensus 186 -------~~~~--------------------------------------------------------------------- 189 (851)
T COG1205 186 -------HDAW--------------------------------------------------------------------- 189 (851)
T ss_pred -------cchH---------------------------------------------------------------------
Confidence 0000
Q ss_pred CcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCc-ccccCcchHHHH
Q psy3476 263 LHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIH-ERHLHGDFLLGV 341 (1417)
Q Consensus 263 ~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaH-ER~l~~d~ll~l 341 (1417)
.-.++++++||+||+| -|+..+.-...+
T Consensus 190 ---------------------------------------------------~~~~~~Lk~lVvDElHtYrGv~GS~vA~l 218 (851)
T COG1205 190 ---------------------------------------------------LWLLRNLKYLVVDELHTYRGVQGSEVALL 218 (851)
T ss_pred ---------------------------------------------------HHHHhcCcEEEEecceeccccchhHHHHH
Confidence 0235668999999999 344444334445
Q ss_pred HHHHhcc----CCCCcEEEEccCC-C-HHHHHHHhccCceE-EEeCCcccceeEEeccccccccccccCCCCChHHHHHH
Q psy3476 342 IKCLLHS----TAEVKIILMSATI-N-IELFHTYFNRIAKI-IKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILS 414 (1417)
Q Consensus 342 lk~l~~~----r~~~qvIlmSATl-n-~~~~~~~f~~~~~v-i~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~ 414 (1417)
++++... ..+.|+|.+|||+ | .+...++++..... +.-.+.+-.........+...... ...........-.
T Consensus 219 lRRL~~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~-~~~r~s~~~~~~~ 297 (851)
T COG1205 219 LRRLLRRLRRYGSPLQIICTSATLANPGEFAEELFGRDFEVPVDEDGSPRGLRYFVRREPPIRELA-ESIRRSALAELAT 297 (851)
T ss_pred HHHHHHHHhccCCCceEEEEeccccChHHHHHHhcCCcceeeccCCCCCCCceEEEEeCCcchhhh-hhcccchHHHHHH
Confidence 5555443 3489999999999 4 44555666544444 433333333222222211110000 0011111222222
Q ss_pred HHHhhCCCCCCCcEEEEeCCHHHHHHHHHH----HHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchh
Q psy3476 415 IIDKKYPRTERGDVLIFMSGISEISSIVRA----AQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIA 490 (1417)
Q Consensus 415 ~l~~~~~~~~~g~iLVFl~~~~eie~la~~----L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIa 490 (1417)
.+...+ ..+-++|||+.++..++.++.. +.... ......+..++|++..++|.+++..|+.|+.+++++||.+
T Consensus 298 ~~~~~~--~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~-~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~Al 374 (851)
T COG1205 298 LAALLV--RNGIQTLVFFRSRKQVELLYLSPRRRLVREG-GKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNAL 374 (851)
T ss_pred HHHHHH--HcCceEEEEEehhhhhhhhhhchhHHHhhcc-hhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhh
Confidence 222222 2356899999999999999733 33322 2234568899999999999999999999999999999999
Q ss_pred hccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecC
Q psy3476 491 ETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYS 552 (1417)
Q Consensus 491 e~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t 552 (1417)
|-||||.++..||..|+ |. .|..+++||+|||||.+ .+..+..+.
T Consensus 375 elgidiG~ldavi~~g~--------P~---------~s~~~~~Q~~GRaGR~~~~~l~~~v~~ 420 (851)
T COG1205 375 ELGIDIGSLDAVIAYGY--------PG---------VSVLSFRQRAGRAGRRGQESLVLVVLR 420 (851)
T ss_pred hhceeehhhhhHhhcCC--------CC---------chHHHHHHhhhhccCCCCCceEEEEeC
Confidence 99999999999999665 22 15677889999999998 555554444
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-21 Score=245.91 Aligned_cols=330 Identities=18% Similarity=0.207 Sum_probs=239.3
Q ss_pred cCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC--CCcEEEecchHHHHHHHHHHHHHHHccccCCeEE
Q psy3476 36 NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG--FQRIACTQPRRIACISLSKRVAYETLSQYSNLVG 113 (1417)
Q Consensus 36 ~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~--~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vG 113 (1417)
....+..+|++.+..|..+..|+++||||||||...-.++.... .+++++|.|-+....|....+-.+.+.- ...||
T Consensus 116 ~~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv-~~~vG 194 (1041)
T COG4581 116 YPFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDV-ADMVG 194 (1041)
T ss_pred CCCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhh-hhhcc
Confidence 34556789999999999999999999999999976544444332 3579999999988888888887776532 23356
Q ss_pred EEEeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhccccch
Q psy3476 114 YQIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAY 193 (1417)
Q Consensus 114 y~ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 193 (1417)
. +.++-..++.+.++++|+.+|..++-.+
T Consensus 195 L-~TGDv~IN~~A~clvMTTEILRnMlyrg-------------------------------------------------- 223 (1041)
T COG4581 195 L-MTGDVSINPDAPCLVMTTEILRNMLYRG-------------------------------------------------- 223 (1041)
T ss_pred c-eecceeeCCCCceEEeeHHHHHHHhccC--------------------------------------------------
Confidence 4 3445567888999999998887776443
Q ss_pred hhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCcccccc
Q psy3476 194 EIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIVAAD 273 (1417)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~~~~~ 273 (1417)
T Consensus 224 -------------------------------------------------------------------------------- 223 (1041)
T COG4581 224 -------------------------------------------------------------------------------- 223 (1041)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCc
Q psy3476 274 YFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVK 353 (1417)
Q Consensus 274 ~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~q 353 (1417)
...+..+..||+||+| ..-+.+-.......++..+..++
T Consensus 224 ----------------------------------------~~~~~~i~~ViFDEvH-yi~D~eRG~VWEE~Ii~lP~~v~ 262 (1041)
T COG4581 224 ----------------------------------------SESLRDIEWVVFDEVH-YIGDRERGVVWEEVIILLPDHVR 262 (1041)
T ss_pred ----------------------------------------cccccccceEEEEeee-eccccccchhHHHHHHhcCCCCc
Confidence 0456778999999999 33333333444556677888999
Q ss_pred EEEEccCC-CHHHHHHHhc----cCceEEEeCCcccceeEEecccccc----ccccc---cC---------------CC-
Q psy3476 354 IILMSATI-NIELFHTYFN----RIAKIIKVPGRLYPIQLEYHPIVEL----DRTKS---EK---------------LD- 405 (1417)
Q Consensus 354 vIlmSATl-n~~~~~~~f~----~~~~vi~v~gr~~pv~v~~~~~~~~----~~~~~---~~---------------~~- 405 (1417)
+|+||||+ |++.|+.|+. .++.+|..+.|+.|++.++.+.... +.... .. ..
T Consensus 263 ~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~~~~~~~~~ 342 (1041)
T COG4581 263 FVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSCFSEKVRET 342 (1041)
T ss_pred EEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhccchhcccc
Confidence 99999999 8999999996 3788889999999999887654110 00000 00 00
Q ss_pred -C--------------------ChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhh---------------
Q psy3476 406 -P--------------------GPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYN--------------- 449 (1417)
Q Consensus 406 -~--------------------~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~--------------- 449 (1417)
. .....+++.+. ....-++++|+-++..|+..+..+....
T Consensus 343 ~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~----~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e~~i~~ii 418 (1041)
T COG4581 343 DDGDVGRYARRTKALRGSAKGPAGRPEIVNKLD----KDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKERAIREII 418 (1041)
T ss_pred CccccccccccccccCCcccccccchHHHhhhh----hhcCCceEEEEEchhhHHHHHHHhcccccccCCcHHHHHHHHH
Confidence 0 00011222221 1334589999999999999888775210
Q ss_pred --------hccCCc-------------EEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcc
Q psy3476 450 --------EKSQGW-------------IVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKV 508 (1417)
Q Consensus 450 --------~~~~~~-------------~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~ 508 (1417)
....++ .+..+|+||-+..+..++..|..|.+||++||.+.+.|+|.|.-++|+- ++.
T Consensus 419 ~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmPartvv~~-~l~ 497 (1041)
T COG4581 419 DHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMPARTVVFT-SLS 497 (1041)
T ss_pred HHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCcccceeee-eeE
Confidence 001111 2446799999999999999999999999999999999999998887773 443
Q ss_pred cceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecC
Q psy3476 509 KEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYS 552 (1417)
Q Consensus 509 k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t 552 (1417)
| ||.. ...|+|..+|.|+.|||||.| .|.++....
T Consensus 498 K---~dG~------~~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~~ 535 (1041)
T COG4581 498 K---FDGN------GHRWLSPGEYTQMSGRAGRRGLDVLGTVIVIEP 535 (1041)
T ss_pred E---ecCC------ceeecChhHHHHhhhhhccccccccceEEEecC
Confidence 3 4422 346899999999999999999 599987743
|
|
| >KOG0947|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.4e-21 Score=236.36 Aligned_cols=329 Identities=16% Similarity=0.171 Sum_probs=228.3
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHH--HHcCCCcEEEecchHHHHHHHHHHHHHHHccccCCeEEEE
Q psy3476 38 LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYL--VQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQ 115 (1417)
Q Consensus 38 lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~i--le~~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy~ 115 (1417)
.-+..+|++++..+..++.|.|.|+|.+|||..+-..| ......|.++|.|-+....| --.++.+.+|. || -
T Consensus 296 FelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQ----KfRDFk~tF~D-vg-L 369 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQ----KFRDFKETFGD-VG-L 369 (1248)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccc----hHHHHHHhccc-cc-e
Confidence 33467899999999999999999999999997654433 23345689999997654443 34455555553 45 4
Q ss_pred EeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhccccchhh
Q psy3476 116 IRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEI 195 (1417)
Q Consensus 116 ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 195 (1417)
+.++-...+...+++||+.+|..+|-++
T Consensus 370 lTGDvqinPeAsCLIMTTEILRsMLYrg---------------------------------------------------- 397 (1248)
T KOG0947|consen 370 LTGDVQINPEASCLIMTTEILRSMLYRG---------------------------------------------------- 397 (1248)
T ss_pred eecceeeCCCcceEeehHHHHHHHHhcc----------------------------------------------------
Confidence 5667778899999999999998877543
Q ss_pred hhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCcccccccc
Q psy3476 196 EEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIVAADYF 275 (1417)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~~~~~~~ 275 (1417)
T Consensus 398 -------------------------------------------------------------------------------- 397 (1248)
T KOG0947|consen 398 -------------------------------------------------------------------------------- 397 (1248)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEE
Q psy3476 276 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKII 355 (1417)
Q Consensus 276 l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvI 355 (1417)
...++++..||+||+| ..-+.+-.-.+...++.+++++++|
T Consensus 398 --------------------------------------adliRDvE~VIFDEVH-YiND~eRGvVWEEViIMlP~HV~~I 438 (1248)
T KOG0947|consen 398 --------------------------------------ADLIRDVEFVIFDEVH-YINDVERGVVWEEVIIMLPRHVNFI 438 (1248)
T ss_pred --------------------------------------cchhhccceEEEeeee-ecccccccccceeeeeeccccceEE
Confidence 0234568899999999 1111111122334566788999999
Q ss_pred EEccCC-CHHHHHHHhcc----CceEEEeCCcccceeEEecccc------ccc-------c------cc-----------
Q psy3476 356 LMSATI-NIELFHTYFNR----IAKIIKVPGRLYPIQLEYHPIV------ELD-------R------TK----------- 400 (1417)
Q Consensus 356 lmSATl-n~~~~~~~f~~----~~~vi~v~gr~~pv~v~~~~~~------~~~-------~------~~----------- 400 (1417)
++|||+ |...|++|.+. +..++....|++|++.+..... ... . .+
T Consensus 439 lLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~ 518 (1248)
T KOG0947|consen 439 LLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKS 518 (1248)
T ss_pred EEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhcccccccccccc
Confidence 999999 79999999974 4556677789999886532110 000 0 00
Q ss_pred c--------------cCCC-----------CChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhh-----
Q psy3476 401 S--------------EKLD-----------PGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNE----- 450 (1417)
Q Consensus 401 ~--------------~~~~-----------~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~----- 450 (1417)
. .... .......+..+. .+....--+++|||-+++.|++.++.|....-
T Consensus 519 ~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin-~L~k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~E 597 (1248)
T KOG0947|consen 519 DARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLIN-HLRKKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKE 597 (1248)
T ss_pred cccccccccccCCcCCCCCCCcccccccccccccchHHHHHH-HHhhcccCceEEEEEccccHHHHHHHHhccCcccchh
Confidence 0 0000 000001233332 22223445899999999999999999864210
Q ss_pred -----------------cc------------CCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEE
Q psy3476 451 -----------------KS------------QGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRF 501 (1417)
Q Consensus 451 -----------------~~------------~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~ 501 (1417)
.. -.-.+..+|||+-+--+.-|+..|..|.+||++||-++++|||.|+.++
T Consensus 598 KseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtv 677 (1248)
T KOG0947|consen 598 KSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTV 677 (1248)
T ss_pred HHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeE
Confidence 00 0124778899999999999999999999999999999999999999999
Q ss_pred EEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHH
Q psy3476 502 VVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEE 554 (1417)
Q Consensus 502 VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~ 554 (1417)
|+++-. ..|.. ....+...+|.||+|||||.| .|.++.+....
T Consensus 678 VF~Sl~----KhDG~------efR~L~PGEytQMAGRAGRRGlD~tGTVii~~~~~ 723 (1248)
T KOG0947|consen 678 VFSSLR----KHDGN------EFRELLPGEYTQMAGRAGRRGLDETGTVIIMCKDS 723 (1248)
T ss_pred Eeeehh----hccCc------ceeecCChhHHhhhccccccccCcCceEEEEecCC
Confidence 998432 23322 123467789999999999999 59988776543
|
|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=239.11 Aligned_cols=167 Identities=21% Similarity=0.262 Sum_probs=123.1
Q ss_pred cEEEEccCCC--HHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEE
Q psy3476 353 KIILMSATIN--IELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLI 430 (1417)
Q Consensus 353 qvIlmSATln--~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLV 430 (1417)
++.+||.|.- .+.|.+.+ +..++.+|.. .|..-...+...... .......++..+.+.. ..+.++||
T Consensus 365 kl~GmTGTa~t~~~e~~~~Y--~l~v~~IPt~-kp~~r~d~~~~i~~~------~~~K~~al~~~i~~~~--~~~~pvLI 433 (790)
T PRK09200 365 KLSGMTGTAKTEEKEFFEVY--NMEVVQIPTN-RPIIRIDYPDKVFVT------LDEKYKAVIEEVKERH--ETGRPVLI 433 (790)
T ss_pred HHhccCCCChHHHHHHHHHh--CCcEEECCCC-CCcccccCCCeEEcC------HHHHHHHHHHHHHHHH--hcCCCEEE
Confidence 7889999983 34566665 5677777643 222211111110000 0112334445554432 24678999
Q ss_pred EeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCc---CCeE-----EE
Q psy3476 431 FMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITI---DGIR-----FV 502 (1417)
Q Consensus 431 Fl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdI---P~V~-----~V 502 (1417)
||+|++.++.+++.|.+ .++.+..+||.+.++++..+...+..| +|+||||+|+||+|| |+|. +|
T Consensus 434 f~~t~~~se~l~~~L~~-----~gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~~GGL~V 506 (790)
T PRK09200 434 GTGSIEQSETFSKLLDE-----AGIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEGVHELGGLAV 506 (790)
T ss_pred EeCcHHHHHHHHHHHHH-----CCCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccccccccCcEE
Confidence 99999999999999987 678999999999999999888888877 799999999999999 7998 99
Q ss_pred EcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHH
Q psy3476 503 VDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQ 555 (1417)
Q Consensus 503 IdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~ 555 (1417)
|+ ||.|.+...|. ||+|||||.| +|.++.+++.++
T Consensus 507 I~--------~d~p~s~r~y~----------qr~GRtGR~G~~G~s~~~is~eD 542 (790)
T PRK09200 507 IG--------TERMESRRVDL----------QLRGRSGRQGDPGSSQFFISLED 542 (790)
T ss_pred Ee--------ccCCCCHHHHH----------HhhccccCCCCCeeEEEEEcchH
Confidence 99 88887655555 9999999999 899999988654
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.6e-21 Score=251.59 Aligned_cols=93 Identities=18% Similarity=0.162 Sum_probs=73.6
Q ss_pred CcEEEEeCCHHH---HHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEe----cchhhccCCcCC
Q psy3476 426 GDVLIFMSGISE---ISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS----TNIAETSITIDG 498 (1417)
Q Consensus 426 g~iLVFl~~~~e---ie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVA----TnIae~GIdIP~ 498 (1417)
.++||||+++.. ++.+++.|.. .++.+..+||+| + +.++.|++|+.+|||| ||+++||||+|+
T Consensus 329 ~~~LIFv~t~~~~~~ae~l~~~L~~-----~gi~v~~~hg~l----~-~~l~~F~~G~~~VLVatas~tdv~aRGIDiP~ 398 (1176)
T PRK09401 329 DGGLIFVPSDKGKEYAEELAEYLED-----LGINAELAISGF----E-RKFEKFEEGEVDVLVGVASYYGVLVRGIDLPE 398 (1176)
T ss_pred CCEEEEEecccChHHHHHHHHHHHH-----CCCcEEEEeCcH----H-HHHHHHHCCCCCEEEEecCCCCceeecCCCCc
Confidence 579999999777 9999999987 689999999999 2 2359999999999999 699999999999
Q ss_pred -eEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCC
Q psy3476 499 -IRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAG 540 (1417)
Q Consensus 499 -V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAG 540 (1417)
|+|||+ ||.|.---++. -...+.||.||+-
T Consensus 399 ~IryVI~--------y~vP~~~~~~~----~~~~~~~~~~r~~ 429 (1176)
T PRK09401 399 RIRYAIF--------YGVPKFKFSLE----EELAPPFLLLRLL 429 (1176)
T ss_pred ceeEEEE--------eCCCCEEEecc----ccccCHHHHHHHH
Confidence 899999 66665111110 1122349999885
|
|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=254.93 Aligned_cols=117 Identities=17% Similarity=0.161 Sum_probs=90.7
Q ss_pred CCcEEEEeCCHHHH---HHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEec----chhhccCCcC
Q psy3476 425 RGDVLIFMSGISEI---SSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST----NIAETSITID 497 (1417)
Q Consensus 425 ~g~iLVFl~~~~ei---e~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVAT----nIae~GIdIP 497 (1417)
+.+.||||++++.+ +.+++.|.+ .++.+..+||+ |..+++.|++|+.+||||| ++++||||+|
T Consensus 330 g~~gIVF~~t~~~~e~ae~la~~L~~-----~Gi~a~~~h~~-----R~~~l~~F~~G~~~VLVaT~s~~gvaaRGIDiP 399 (1638)
T PRK14701 330 GKGGLIFVPIDEGAEKAEEIEKYLLE-----DGFKIELVSAK-----NKKGFDLFEEGEIDYLIGVATYYGTLVRGLDLP 399 (1638)
T ss_pred CCCeEEEEeccccchHHHHHHHHHHH-----CCCeEEEecch-----HHHHHHHHHcCCCCEEEEecCCCCeeEecCccC
Confidence 35789999998764 788998887 68999999995 8899999999999999999 5999999999
Q ss_pred C-eEEEEcCCcccceecccCC---Cccccceee---cCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHHh
Q psy3476 498 G-IRFVVDSGKVKEMSYDVTA---KMSTLQEFW---ISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLL 559 (1417)
Q Consensus 498 ~-V~~VIdsG~~k~~~yD~~~---~~~~l~~~~---ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~l 559 (1417)
+ |+|||+ ||.|. ++..+.... .......++.|||||.| ++.|+..+..++...+
T Consensus 400 ~~Vryvi~--------~~~Pk~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~ 461 (1638)
T PRK14701 400 ERIRFAVF--------YGVPKFRFRVDLEDPTIYRILGLLSEILKIEEELKEGIPIEGVLDVFPEDVEFL 461 (1638)
T ss_pred CccCEEEE--------eCCCCCCcchhhcccchhhhhcchHHHHHhhhhcccCCcchhHHHhHHHHHHHH
Confidence 9 999999 66665 333222110 01234567889999999 7888766666655543
|
|
| >KOG0337|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.2e-21 Score=217.60 Aligned_cols=226 Identities=19% Similarity=0.245 Sum_probs=170.8
Q ss_pred ccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHH--HHHHHh
Q psy3476 293 HGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIE--LFHTYF 370 (1417)
Q Consensus 293 ~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~--~~~~~f 370 (1417)
|+|++++||+++.|+.+++. ..|+.+.+||+||++ |.+..+|...+-+.+.+.+.+.|.++||||++.. .|++-=
T Consensus 140 npDii~ATpgr~~h~~vem~--l~l~sveyVVfdEad-rlfemgfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaG 216 (529)
T KOG0337|consen 140 NPDIIIATPGRLLHLGVEMT--LTLSSVEYVVFDEAD-RLFEMGFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAG 216 (529)
T ss_pred CCCEEEecCceeeeeehhee--ccccceeeeeehhhh-HHHhhhhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHcc
Confidence 46677778888888877775 668999999999999 9999999999999999999999999999999744 333322
Q ss_pred ccCceEEEeC--Ccccc-eeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHh
Q psy3476 371 NRIAKIIKVP--GRLYP-IQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQE 447 (1417)
Q Consensus 371 ~~~~~vi~v~--gr~~p-v~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~ 447 (1417)
..++..+.++ .+..+ ++..+.... .......++..+.... ...+.+||++|+..++.+...++.
T Consensus 217 l~~p~lVRldvetkise~lk~~f~~~~----------~a~K~aaLl~il~~~~---~~~~t~vf~~tk~hve~~~~ll~~ 283 (529)
T KOG0337|consen 217 LVPPVLVRLDVETKISELLKVRFFRVR----------KAEKEAALLSILGGRI---KDKQTIVFVATKHHVEYVRGLLRD 283 (529)
T ss_pred CCCCceEEeehhhhcchhhhhheeeec----------cHHHHHHHHHHHhccc---cccceeEEecccchHHHHHHHHHh
Confidence 1122222211 11000 000000000 0011122222332222 245799999999999999999987
Q ss_pred hhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeec
Q psy3476 448 YNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWI 527 (1417)
Q Consensus 448 ~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~I 527 (1417)
.++.+-.++|.|.+..|..-+..|..++-.++|.|++|++|+|||...-||| ||.|.....+.
T Consensus 284 -----~g~~~s~iysslD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvin--------yd~p~~~klFv---- 346 (529)
T KOG0337|consen 284 -----FGGEGSDIYSSLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVIN--------YDFPPDDKLFV---- 346 (529)
T ss_pred -----cCCCccccccccChHhhhhccccccCCccceEEEehhhhccCCCcccccccc--------ccCCCCCceEE----
Confidence 6778888999999999999999999999999999999999999999999999 99999888888
Q ss_pred CHhhHHhhcCcCCCCC-CCeEEEecCHHHHH
Q psy3476 528 SKASAEQRKGRAGRTG-PGVCYRLYSEEQYS 557 (1417)
Q Consensus 528 Skasa~QR~GRAGR~g-~G~cy~L~t~~~~~ 557 (1417)
||.||+.|.| .|..|.++..++..
T Consensus 347 ------hRVgr~aragrtg~aYs~V~~~~~~ 371 (529)
T KOG0337|consen 347 ------HRVGRVARAGRTGRAYSLVASTDDP 371 (529)
T ss_pred ------EEecchhhccccceEEEEEecccch
Confidence 9999999999 79999998776543
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4e-20 Score=237.91 Aligned_cols=108 Identities=18% Similarity=0.257 Sum_probs=82.3
Q ss_pred HHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHH----HHhccC-CCCC---ce
Q psy3476 411 RILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQD----RVFHYA-PEGL---RK 482 (1417)
Q Consensus 411 ~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~----~v~~~f-~~G~---rk 482 (1417)
.+++.+.+.. ..++++||||||++.++.+++.|++... ....+..+||.++..+|. ++++.| ++|+ .+
T Consensus 548 ~~l~~i~~~~--~~g~~vLVf~NTV~~Aq~ly~~L~~~~~--~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ 623 (878)
T PRK09694 548 TLLQRMIAAA--NAGAQVCLICNLVDDAQKLYQRLKELNN--TQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGR 623 (878)
T ss_pred HHHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHhhCC--CCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCe
Confidence 3444444433 3467899999999999999999986321 246799999999999994 566677 6676 47
Q ss_pred EEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC
Q psy3476 483 CIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG 543 (1417)
Q Consensus 483 VLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g 543 (1417)
|||||+++|+||||+ ++++|. ... +.+++.||+||+||.+
T Consensus 624 ILVaTQViE~GLDId-~DvlIt--------dla------------PidsLiQRaGR~~R~~ 663 (878)
T PRK09694 624 ILVATQVVEQSLDLD-FDWLIT--------QLC------------PVDLLFQRLGRLHRHH 663 (878)
T ss_pred EEEECcchhheeecC-CCeEEE--------CCC------------CHHHHHHHHhccCCCC
Confidence 999999999999995 677775 222 2346669999999986
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-20 Score=235.95 Aligned_cols=227 Identities=16% Similarity=0.213 Sum_probs=146.9
Q ss_pred ccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchH-----HHHHHHHhccCCCCcEEEEccCCCHHHHHHH
Q psy3476 295 DFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFL-----LGVIKCLLHSTAEVKIILMSATINIELFHTY 369 (1417)
Q Consensus 295 d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~l-----l~llk~l~~~r~~~qvIlmSATln~~~~~~~ 369 (1417)
++++||+..++ ..++++++|||||+|+-+...+-. ..+ ........+.++|++|||++.+.+...
T Consensus 243 ~IVVgTrsal~---------~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~v-a~~ra~~~~~~~il~SATps~~s~~~~ 312 (679)
T PRK05580 243 KVVIGARSALF---------LPFKNLGLIIVDEEHDSSYKQQEGPRYHARDL-AVVRAKLENIPVVLGSATPSLESLANA 312 (679)
T ss_pred CEEEeccHHhc---------ccccCCCEEEEECCCccccccCcCCCCcHHHH-HHHHhhccCCCEEEEcCCCCHHHHHHH
Confidence 56677777765 457899999999999554433211 111 122233568899999999998887776
Q ss_pred hccCceEEEeCCcc----cceeEEeccccccccc-cccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHH--------
Q psy3476 370 FNRIAKIIKVPGRL----YPIQLEYHPIVELDRT-KSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGIS-------- 436 (1417)
Q Consensus 370 f~~~~~vi~v~gr~----~pv~v~~~~~~~~~~~-~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~-------- 436 (1417)
..+....+..+.|. .| .+........... ....+ ...+++.+.+.+ ..+.++|||+|.+.
T Consensus 313 ~~g~~~~~~l~~r~~~~~~p-~v~~id~~~~~~~~~~~~l----s~~l~~~i~~~l--~~g~qvll~~nrrGy~~~~~C~ 385 (679)
T PRK05580 313 QQGRYRLLRLTKRAGGARLP-EVEIIDMRELLRGENGSFL----SPPLLEAIKQRL--ERGEQVLLFLNRRGYAPFLLCR 385 (679)
T ss_pred hccceeEEEeccccccCCCC-eEEEEechhhhhhcccCCC----CHHHHHHHHHHH--HcCCeEEEEEcCCCCCCceEhh
Confidence 55556666666553 22 1222111110000 00111 123444444444 23568999987531
Q ss_pred ----------------------------------------------------HHHHHHHHHHhhhhccCCcEEEEecCCC
Q psy3476 437 ----------------------------------------------------EISSIVRAAQEYNEKSQGWIVLPLHSTL 464 (1417)
Q Consensus 437 ----------------------------------------------------eie~la~~L~~~~~~~~~~~V~~LHs~L 464 (1417)
.++.+++.|.+.. ++..+..+|+++
T Consensus 386 ~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~f---p~~~v~~~~~d~ 462 (679)
T PRK05580 386 DCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAELF---PEARILRIDRDT 462 (679)
T ss_pred hCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhC---CCCcEEEEeccc
Confidence 3455666665543 567899999998
Q ss_pred CH--HHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEE--cCCcccceecccCCCccccceeecCHhhHHhhcCcCC
Q psy3476 465 SL--EEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVV--DSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAG 540 (1417)
Q Consensus 465 s~--~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VI--dsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAG 540 (1417)
.. ++++++++.|++|+..|||+|+++++|+|+|+|++|+ | .|.......|...--.-+.+.|++||||
T Consensus 463 ~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~--------aD~~l~~pdfra~Er~~~~l~q~~GRag 534 (679)
T PRK05580 463 TRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLD--------ADLGLFSPDFRASERTFQLLTQVAGRAG 534 (679)
T ss_pred cccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEc--------CchhccCCccchHHHHHHHHHHHHhhcc
Confidence 74 6789999999999999999999999999999999884 5 5544444443322223356779999999
Q ss_pred CCC-CCeEEE
Q psy3476 541 RTG-PGVCYR 549 (1417)
Q Consensus 541 R~g-~G~cy~ 549 (1417)
|.+ +|.++.
T Consensus 535 R~~~~g~vii 544 (679)
T PRK05580 535 RAEKPGEVLI 544 (679)
T ss_pred CCCCCCEEEE
Confidence 977 799884
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-19 Score=224.52 Aligned_cols=168 Identities=18% Similarity=0.216 Sum_probs=123.6
Q ss_pred CcEEEEccCC--CHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEE
Q psy3476 352 VKIILMSATI--NIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429 (1417)
Q Consensus 352 ~qvIlmSATl--n~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iL 429 (1417)
.++.+||.|. ..+.|.+.+ +.+++.+|... |+.-...|...... ....+..+++.+.+.+ ..+.++|
T Consensus 341 ~kl~GmTGTa~te~~E~~~iY--~l~vv~IPtnk-p~~R~d~~d~i~~t------~~~k~~ai~~~i~~~~--~~grpvL 409 (745)
T TIGR00963 341 EKLSGMTGTAKTEEEEFEKIY--NLEVVVVPTNR-PVIRKDLSDLVYKT------EEEKWKAVVDEIKERH--AKGQPVL 409 (745)
T ss_pred chhhccCCCcHHHHHHHHHHh--CCCEEEeCCCC-CeeeeeCCCeEEcC------HHHHHHHHHHHHHHHH--hcCCCEE
Confidence 4788999999 345677776 56677777432 22211111111000 0112344555554443 3467999
Q ss_pred EEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCC-------eEEE
Q psy3476 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDG-------IRFV 502 (1417)
Q Consensus 430 VFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~-------V~~V 502 (1417)
|||++.+.++.+++.|.+ .++....+||. +.+|+..+..|+.+...|+||||+|+||+||+. ..+|
T Consensus 410 V~t~si~~se~ls~~L~~-----~gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~V 482 (745)
T TIGR00963 410 VGTTSVEKSELLSNLLKE-----RGIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYV 482 (745)
T ss_pred EEeCcHHHHHHHHHHHHH-----cCCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEeccccCCcCCCccchhhcCCcEE
Confidence 999999999999999987 67888999999 788999999999999999999999999999998 4499
Q ss_pred EcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHH
Q psy3476 503 VDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQ 555 (1417)
Q Consensus 503 IdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~ 555 (1417)
|+ |+.|.+. ..+.||+||+||.| ||.+..+++.++
T Consensus 483 I~--------t~~p~s~----------ri~~q~~GRtGRqG~~G~s~~~ls~eD 518 (745)
T TIGR00963 483 IG--------TERHESR----------RIDNQLRGRSGRQGDPGSSRFFLSLED 518 (745)
T ss_pred Ee--------cCCCCcH----------HHHHHHhccccCCCCCcceEEEEeccH
Confidence 98 6666544 44559999999999 899988887664
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=228.12 Aligned_cols=107 Identities=15% Similarity=0.202 Sum_probs=89.2
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCC-CceEEEecchhhccCCcCCeEEE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEG-LRKCIVSTNIAETSITIDGIRFV 502 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G-~rkVLVATnIae~GIdIP~V~~V 502 (1417)
.+.++||||.....+..+++.|. +..+||++++.+|.++++.|+.| ..++||+|+++.+|||+|++++|
T Consensus 495 ~g~kiLVF~~~~~~l~~~a~~L~----------~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vv 564 (732)
T TIGR00603 495 RGDKIIVFSDNVFALKEYAIKLG----------KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVL 564 (732)
T ss_pred cCCeEEEEeCCHHHHHHHHHHcC----------CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEE
Confidence 46799999999998888877662 34589999999999999999875 78999999999999999999999
Q ss_pred EcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCC-CeE-------EEecCHHHHH
Q psy3476 503 VDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP-GVC-------YRLYSEEQYS 557 (1417)
Q Consensus 503 IdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~-G~c-------y~L~t~~~~~ 557 (1417)
|. ++.+.+ |+.++.||.||++|.++ |.+ |.|++++..+
T Consensus 565 I~--------~s~~~g---------S~~q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 565 IQ--------ISSHYG---------SRRQEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQE 610 (732)
T ss_pred EE--------eCCCCC---------CHHHHHHHhcccccCCCCCccccccceEEEEecCCchH
Confidence 98 766532 67778899999999985 444 8888765443
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0950|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.4e-20 Score=225.53 Aligned_cols=222 Identities=22% Similarity=0.264 Sum_probs=154.1
Q ss_pred cCCCCccEEEEecCccccc---CcchHHHHHHHHhcc--CCCCcEEEEccCC-CHHHHHHHhccCceEEEeCCcccceeE
Q psy3476 315 NFLSSYDVLVLDEIHERHL---HGDFLLGVIKCLLHS--TAEVKIILMSATI-NIELFHTYFNRIAKIIKVPGRLYPIQL 388 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l---~~d~ll~llk~l~~~--r~~~qvIlmSATl-n~~~~~~~f~~~~~vi~v~gr~~pv~v 388 (1417)
..+..++.||+||.| ... .+..++.++..+... ....|+|+||||+ |.+.+++|+ ++.+....-|+.|...
T Consensus 337 g~~~~~g~vvVdElh-mi~d~~rg~~lE~~l~k~~y~~~~~~~~iIGMSATi~N~~lL~~~L--~A~~y~t~fRPv~L~E 413 (1008)
T KOG0950|consen 337 GRLDFLGMVVVDELH-MIGDKGRGAILELLLAKILYENLETSVQIIGMSATIPNNSLLQDWL--DAFVYTTRFRPVPLKE 413 (1008)
T ss_pred CCccccCcEEEeeee-eeeccccchHHHHHHHHHHHhccccceeEeeeecccCChHHHHHHh--hhhheecccCcccchh
Confidence 456678999999999 221 223344444444332 3447899999999 899999999 4666666677777665
Q ss_pred Eeccccccccc-cc--------------cCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhh----
Q psy3476 389 EYHPIVELDRT-KS--------------EKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYN---- 449 (1417)
Q Consensus 389 ~~~~~~~~~~~-~~--------------~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~---- 449 (1417)
+..+....-.. +. ...+++ .++....+.. .++.++|||||++..++.++..+....
T Consensus 414 ~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD---~~v~L~tet~--~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~ 488 (1008)
T KOG0950|consen 414 YIKPGSLIYESSRNKVLREIANLYSSNLGDEDPD---HLVGLCTETA--PEGSSVLVFCPSKKNCENVASLIAKKVPKHI 488 (1008)
T ss_pred ccCCCcccccchhhHHHHHhhhhhhhhcccCCCc---ceeeehhhhh--hcCCeEEEEcCcccchHHHHHHHHHHhhHhh
Confidence 44332211100 00 000111 1122222222 234569999999999999987654311
Q ss_pred -----------------------------hccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeE
Q psy3476 450 -----------------------------EKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIR 500 (1417)
Q Consensus 450 -----------------------------~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~ 500 (1417)
...-.+.+..+|+|++.++|+.|+..|++|...|++||++++.|++.|+.+
T Consensus 489 ~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLPArR 568 (1008)
T KOG0950|consen 489 KSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLPARR 568 (1008)
T ss_pred hhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCCcce
Confidence 012345688889999999999999999999999999999999999999999
Q ss_pred EEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHHHHHH
Q psy3476 501 FVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEEQYSL 558 (1417)
Q Consensus 501 ~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~~~~~ 558 (1417)
|+|-.- .+.....++.+|.||+|||||+| -|.++..+.+.+...
T Consensus 569 VIiraP--------------~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e~~~ 615 (1008)
T KOG0950|consen 569 VIIRAP--------------YVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSEKKR 615 (1008)
T ss_pred eEEeCC--------------ccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccchhH
Confidence 999622 23344568889999999999999 599999998877654
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.7e-19 Score=196.05 Aligned_cols=202 Identities=20% Similarity=0.269 Sum_probs=135.9
Q ss_pred ccEEEEecCcccccCcchHHHH-HHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEEeCCccc----ceeEEecccc
Q psy3476 320 YDVLVLDEIHERHLHGDFLLGV-IKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLY----PIQLEYHPIV 394 (1417)
Q Consensus 320 ~~~VIlDEaHER~l~~d~ll~l-lk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~----pv~v~~~~~~ 394 (1417)
++++||||+|--.+..|-.+.+ .+.. ....--.|.||||.+-+.-.+...++...+.++.|.+ |+.-...-..
T Consensus 203 FD~liIDEVDAFP~~~d~~L~~Av~~a--rk~~g~~IylTATp~k~l~r~~~~g~~~~~klp~RfH~~pLpvPkf~w~~~ 280 (441)
T COG4098 203 FDLLIIDEVDAFPFSDDQSLQYAVKKA--RKKEGATIYLTATPTKKLERKILKGNLRILKLPARFHGKPLPVPKFVWIGN 280 (441)
T ss_pred ccEEEEeccccccccCCHHHHHHHHHh--hcccCceEEEecCChHHHHHHhhhCCeeEeecchhhcCCCCCCCceEEecc
Confidence 6789999999555555543332 2222 2345678999999987777777766777788886643 2221111000
Q ss_pred ccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhc
Q psy3476 395 ELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFH 474 (1417)
Q Consensus 395 ~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~ 474 (1417)
-.......++ ..++..+|.+.. ..+.++|||+|+.+..+.+++.|+... +...+...||. .+.|.+..+
T Consensus 281 ~~k~l~r~kl----~~kl~~~lekq~--~~~~P~liF~p~I~~~eq~a~~lk~~~---~~~~i~~Vhs~--d~~R~EkV~ 349 (441)
T COG4098 281 WNKKLQRNKL----PLKLKRWLEKQR--KTGRPVLIFFPEIETMEQVAAALKKKL---PKETIASVHSE--DQHRKEKVE 349 (441)
T ss_pred HHHHhhhccC----CHHHHHHHHHHH--hcCCcEEEEecchHHHHHHHHHHHhhC---Cccceeeeecc--CccHHHHHH
Confidence 0001111111 124555665554 346799999999999999999996533 55677888987 356888889
Q ss_pred cCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC--C-CeEEEe
Q psy3476 475 YAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG--P-GVCYRL 550 (1417)
Q Consensus 475 ~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g--~-G~cy~L 550 (1417)
.|++|+.++|++|.|+|||||+|+|.++|- +.... -.|+++..|.+||+||.- | |..+-+
T Consensus 350 ~fR~G~~~lLiTTTILERGVTfp~vdV~Vl---------gaeh~-------vfTesaLVQIaGRvGRs~~~PtGdv~FF 412 (441)
T COG4098 350 AFRDGKITLLITTTILERGVTFPNVDVFVL---------GAEHR-------VFTESALVQIAGRVGRSLERPTGDVLFF 412 (441)
T ss_pred HHHcCceEEEEEeehhhcccccccceEEEe---------cCCcc-------cccHHHHHHHhhhccCCCcCCCCcEEEE
Confidence 999999999999999999999999987763 11111 136788889999999976 3 765433
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-19 Score=223.27 Aligned_cols=225 Identities=14% Similarity=0.208 Sum_probs=147.4
Q ss_pred ccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHH----HHHHhccCCCCcEEEEccCCCHHHHHHHh
Q psy3476 295 DFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGV----IKCLLHSTAEVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 295 d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~l----lk~l~~~r~~~qvIlmSATln~~~~~~~f 370 (1417)
++++||+..++ ..+.++++|||||+|+-+...+-...+ +........+.++|++|||+..+.+....
T Consensus 78 ~IVVGTrsalf---------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~~~~ 148 (505)
T TIGR00595 78 LVVIGTRSALF---------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYHNAK 148 (505)
T ss_pred CEEECChHHHc---------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHHHHh
Confidence 46777877776 457899999999999555433211100 11222334688999999999988877766
Q ss_pred ccCceEEEeCCcc----cceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHH---------
Q psy3476 371 NRIAKIIKVPGRL----YPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISE--------- 437 (1417)
Q Consensus 371 ~~~~~vi~v~gr~----~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~e--------- 437 (1417)
.+....+..+.|. .| .+........ .....+ ...+++.+.+.+ ..++++|||+|++.-
T Consensus 149 ~g~~~~~~l~~r~~~~~~p-~v~vid~~~~--~~~~~l----s~~l~~~i~~~l--~~g~qvLvflnrrGya~~~~C~~C 219 (505)
T TIGR00595 149 QKAYRLLVLTRRVSGRKPP-EVKLIDMRKE--PRQSFL----SPELITAIEQTL--AAGEQSILFLNRRGYSKNLLCRSC 219 (505)
T ss_pred cCCeEEeechhhhcCCCCC-eEEEEecccc--cccCCc----cHHHHHHHHHHH--HcCCcEEEEEeCCcCCCeeEhhhC
Confidence 4444555554332 22 1222111100 000111 223455555554 346789999876542
Q ss_pred ---------------------------------------------------HHHHHHHHHhhhhccCCcEEEEecCCCCH
Q psy3476 438 ---------------------------------------------------ISSIVRAAQEYNEKSQGWIVLPLHSTLSL 466 (1417)
Q Consensus 438 ---------------------------------------------------ie~la~~L~~~~~~~~~~~V~~LHs~Ls~ 466 (1417)
++.+.+.|.+.. ++..+..+|++++.
T Consensus 220 g~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~f---p~~~v~~~d~d~~~ 296 (505)
T TIGR00595 220 GYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLF---PGARIARIDSDTTS 296 (505)
T ss_pred cCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhC---CCCcEEEEeccccc
Confidence 466667776643 56789999999987
Q ss_pred HHH--HHHhccCCCCCceEEEecchhhccCCcCCeEEEE--cCCcccceecccCCCccccceeecCHhhHHhhcCcCCCC
Q psy3476 467 EEQ--DRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVV--DSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRT 542 (1417)
Q Consensus 467 ~eR--~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VI--dsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~ 542 (1417)
.++ +++++.|++|+.+|||+|+++++|+|+|+|+.|+ | +|.......|...--.-+.+.|++|||||.
T Consensus 297 ~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~--------aD~~l~~pd~ra~E~~~~ll~q~~GRagR~ 368 (505)
T TIGR00595 297 RKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLD--------ADSGLHSPDFRAAERGFQLLTQVAGRAGRA 368 (505)
T ss_pred CccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEc--------CcccccCcccchHHHHHHHHHHHHhccCCC
Confidence 766 8899999999999999999999999999999774 6 555444444322222335677999999998
Q ss_pred C-CCeEE
Q psy3476 543 G-PGVCY 548 (1417)
Q Consensus 543 g-~G~cy 548 (1417)
+ +|.++
T Consensus 369 ~~~g~vi 375 (505)
T TIGR00595 369 EDPGQVI 375 (505)
T ss_pred CCCCEEE
Confidence 7 79887
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0352|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-19 Score=205.63 Aligned_cols=212 Identities=18% Similarity=0.207 Sum_probs=151.2
Q ss_pred CccEEEEecCcccccCc-chHHHHHHH--HhccCCCCcEEEEccCCCHHHHHHHhc---cCceEEEeCCcccceeEEecc
Q psy3476 319 SYDVLVLDEIHERHLHG-DFLLGVIKC--LLHSTAEVKIILMSATINIELFHTYFN---RIAKIIKVPGRLYPIQLEYHP 392 (1417)
Q Consensus 319 ~~~~VIlDEaHER~l~~-d~ll~llk~--l~~~r~~~qvIlmSATln~~~~~~~f~---~~~~vi~v~gr~~pv~v~~~~ 392 (1417)
.+.++|+||||.-+-++ ||..++++. +...-++..-+.++||.+.+.-.+.+. -.-|+-......|.-.++|.-
T Consensus 141 ~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~ 220 (641)
T KOG0352|consen 141 VLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDN 220 (641)
T ss_pred eeeeEEechhhhHhhhccccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHH
Confidence 35789999999766555 777777664 444557889999999997654333331 112221111112222222211
Q ss_pred ccccccccccCCCCChHHHHHHHHHhhC---------CCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCC
Q psy3476 393 IVELDRTKSEKLDPGPYIRILSIIDKKY---------PRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHST 463 (1417)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~il~~l~~~~---------~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~ 463 (1417)
... .+-.+++..+.+.-.+.+ ++...|--||+|.|+++++.++-.|.. .++....+|+|
T Consensus 221 ~~K-------~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~-----~Gi~A~AYHAG 288 (641)
T KOG0352|consen 221 HMK-------SFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEI-----AGIPAMAYHAG 288 (641)
T ss_pred HHH-------HHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhh-----cCcchHHHhcc
Confidence 100 000112222222222221 123357789999999999999998876 78899999999
Q ss_pred CCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC
Q psy3476 464 LSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG 543 (1417)
Q Consensus 464 Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g 543 (1417)
|...||..|.+...+|+..||+||+...+|||-|+|++||+ ||++.++..|. |-.|||||.|
T Consensus 289 LK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViH--------W~~~qn~AgYY----------QESGRAGRDG 350 (641)
T KOG0352|consen 289 LKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIH--------WSPSQNLAGYY----------QESGRAGRDG 350 (641)
T ss_pred cccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEe--------cCchhhhHHHH----------HhccccccCC
Confidence 99999999999999999999999999999999999999999 99998877776 9999999999
Q ss_pred -CCeEEEecCHHHHHHhh
Q psy3476 544 -PGVCYRLYSEEQYSLLA 560 (1417)
Q Consensus 544 -~G~cy~L~t~~~~~~l~ 560 (1417)
+..|-..|++++.+.+.
T Consensus 351 k~SyCRLYYsR~D~~~i~ 368 (641)
T KOG0352|consen 351 KRSYCRLYYSRQDKNALN 368 (641)
T ss_pred CccceeeeecccchHHHH
Confidence 89998889988877544
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-18 Score=230.24 Aligned_cols=76 Identities=13% Similarity=0.185 Sum_probs=68.3
Q ss_pred CCcEEEEeCCH---HHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEe----cchhhccCCcC
Q psy3476 425 RGDVLIFMSGI---SEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS----TNIAETSITID 497 (1417)
Q Consensus 425 ~g~iLVFl~~~---~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVA----TnIae~GIdIP 497 (1417)
++++||||+++ +.++.+++.|.+ .++.+..+||+++. .+++.|++|+.+|||| ||+++||||||
T Consensus 326 ~~~~IVFv~t~~~~~~a~~l~~~L~~-----~g~~a~~lhg~~~~----~~l~~Fr~G~~~vLVata~~tdv~aRGIDip 396 (1171)
T TIGR01054 326 GTGGIVYVSIDYGKEKAEEIAEFLEN-----HGVKAVAYHATKPK----EDYEKFAEGEIDVLIGVASYYGTLVRGLDLP 396 (1171)
T ss_pred CCCEEEEEeccccHHHHHHHHHHHHh-----CCceEEEEeCCCCH----HHHHHHHcCCCCEEEEeccccCcccccCCCC
Confidence 35789999999 999999999987 67899999999973 6889999999999999 59999999999
Q ss_pred C-eEEEEcCCcccceecccCC
Q psy3476 498 G-IRFVVDSGKVKEMSYDVTA 517 (1417)
Q Consensus 498 ~-V~~VIdsG~~k~~~yD~~~ 517 (1417)
+ |+|||+ ||.|.
T Consensus 397 ~~V~~vI~--------~~~P~ 409 (1171)
T TIGR01054 397 ERVRYAVF--------LGVPK 409 (1171)
T ss_pred ccccEEEE--------ECCCC
Confidence 9 899999 77775
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-18 Score=212.21 Aligned_cols=199 Identities=20% Similarity=0.257 Sum_probs=140.4
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCC-CCcEEEEccCCCHHHHH-HHhcc-CceEE-EeCCcccceeEEe
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTA-EVKIILMSATINIELFH-TYFNR-IAKII-KVPGRLYPIQLEY 390 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~-~~qvIlmSATln~~~~~-~~f~~-~~~vi-~v~gr~~pv~v~~ 390 (1417)
-.+.++.+||+||=| | |.-.--..+..... ...++.||||+=+..++ ..|++ +..+| ..|....|+....
T Consensus 380 V~F~~LgLVIiDEQH-R-----FGV~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~ 453 (677)
T COG1200 380 VEFHNLGLVIIDEQH-R-----FGVHQRLALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVV 453 (677)
T ss_pred eeecceeEEEEeccc-c-----ccHHHHHHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEE
Confidence 357789999999999 4 22111222333334 57899999999444443 45532 22222 3444446777766
Q ss_pred ccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHH--------HHHHHHHhhhhccCCcEEEEecC
Q psy3476 391 HPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEIS--------SIVRAAQEYNEKSQGWIVLPLHS 462 (1417)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie--------~la~~L~~~~~~~~~~~V~~LHs 462 (1417)
.+... ...+++.|.+.+ ..+.++.|-||-.++.+ .+++.|+.. .+++.+..+||
T Consensus 454 i~~~~-------------~~~v~e~i~~ei--~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~---~~~~~vgL~HG 515 (677)
T COG1200 454 IPHER-------------RPEVYERIREEI--AKGRQAYVVCPLIEESEKLELQAAEELYEELKSF---LPELKVGLVHG 515 (677)
T ss_pred ecccc-------------HHHHHHHHHHHH--HcCCEEEEEeccccccccchhhhHHHHHHHHHHH---cccceeEEEec
Confidence 55422 234555555554 34778999999776654 344444432 36788999999
Q ss_pred CCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCC
Q psy3476 463 TLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRT 542 (1417)
Q Consensus 463 ~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~ 542 (1417)
.|+.++++.|++.|++|+.+|+|||++.|-|||+|+.++.|- +|+.+ + --|+..|-+||+||.
T Consensus 516 rm~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVI--------e~AER----F-----GLaQLHQLRGRVGRG 578 (677)
T COG1200 516 RMKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVI--------ENAER----F-----GLAQLHQLRGRVGRG 578 (677)
T ss_pred CCChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEE--------echhh----h-----hHHHHHHhccccCCC
Confidence 999999999999999999999999999999999999998875 55443 2 245677999999998
Q ss_pred C-CCeEEEecCHH
Q psy3476 543 G-PGVCYRLYSEE 554 (1417)
Q Consensus 543 g-~G~cy~L~t~~ 554 (1417)
+ ++.|+.+|...
T Consensus 579 ~~qSyC~Ll~~~~ 591 (677)
T COG1200 579 DLQSYCVLLYKPP 591 (677)
T ss_pred CcceEEEEEeCCC
Confidence 8 89999998643
|
|
| >KOG0351|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.7e-18 Score=219.18 Aligned_cols=206 Identities=23% Similarity=0.275 Sum_probs=153.4
Q ss_pred ccEEEEecCcccccCc-chHHHHHHH--HhccCCCCcEEEEccCCCHH---HHHHHhc-cCceEEEeCCcccceeEEecc
Q psy3476 320 YDVLVLDEIHERHLHG-DFLLGVIKC--LLHSTAEVKIILMSATINIE---LFHTYFN-RIAKIIKVPGRLYPIQLEYHP 392 (1417)
Q Consensus 320 ~~~VIlDEaHER~l~~-d~ll~llk~--l~~~r~~~qvIlmSATln~~---~~~~~f~-~~~~vi~v~gr~~pv~v~~~~ 392 (1417)
+..+||||||.-+-++ ||...+.+. +....+...+|.++||.... ++.+-++ .++.++... ..+-.++|.-
T Consensus 386 lal~vIDEAHCVSqWgHdFRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~s--fnR~NL~yeV 463 (941)
T KOG0351|consen 386 LALFVIDEAHCVSQWGHDFRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKSS--FNRPNLKYEV 463 (941)
T ss_pred eEEEEecHHHHhhhhcccccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceeccc--CCCCCceEEE
Confidence 7899999999666555 677766543 34445668999999999543 4444442 234433221 1111122211
Q ss_pred ccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHH
Q psy3476 393 IVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRV 472 (1417)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v 472 (1417)
.... +.+....+...+... .+.+..||+|.++.+|+.++..|+. .++....+|+||+..+|..|
T Consensus 464 ~~k~--------~~~~~~~~~~~~~~~---~~~~s~IIYC~sr~~ce~vs~~L~~-----~~~~a~~YHAGl~~~~R~~V 527 (941)
T KOG0351|consen 464 SPKT--------DKDALLDILEESKLR---HPDQSGIIYCLSRKECEQVSAVLRS-----LGKSAAFYHAGLPPKERETV 527 (941)
T ss_pred Eecc--------CccchHHHHHHhhhc---CCCCCeEEEeCCcchHHHHHHHHHH-----hchhhHhhhcCCCHHHHHHH
Confidence 1111 011223333334333 4567899999999999999999988 56889999999999999999
Q ss_pred hccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEec
Q psy3476 473 FHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLY 551 (1417)
Q Consensus 473 ~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~ 551 (1417)
.+.|-.++.+|||||=.+.+|||.|||++||+ |..|..++.|. |-+|||||.| +..|..+|
T Consensus 528 q~~w~~~~~~VivATVAFGMGIdK~DVR~ViH--------~~lPks~E~YY----------QE~GRAGRDG~~s~C~l~y 589 (941)
T KOG0351|consen 528 QKAWMSDKIRVIVATVAFGMGIDKPDVRFVIH--------YSLPKSFEGYY----------QEAGRAGRDGLPSSCVLLY 589 (941)
T ss_pred HHHHhcCCCeEEEEEeeccCCCCCCceeEEEE--------CCCchhHHHHH----------HhccccCcCCCcceeEEec
Confidence 99999999999999999999999999999999 88898888887 9999999999 89999999
Q ss_pred CHHHHHHhhc
Q psy3476 552 SEEQYSLLAE 561 (1417)
Q Consensus 552 t~~~~~~l~~ 561 (1417)
...++..+..
T Consensus 590 ~~~D~~~l~~ 599 (941)
T KOG0351|consen 590 GYADISELRR 599 (941)
T ss_pred chhHHHHHHH
Confidence 9998876553
|
|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-17 Score=203.78 Aligned_cols=96 Identities=20% Similarity=0.239 Sum_probs=83.7
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVV 503 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VI 503 (1417)
.+.+++||+...+++..++..+.. ++. +..+.+..+..+|..+++.|+.|.+++||++.++..|+|+|++.++|
T Consensus 282 ~~~~~lif~~~~~~a~~i~~~~~~-----~~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i 355 (442)
T COG1061 282 RGDKTLIFASDVEHAYEIAKLFLA-----PGI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLI 355 (442)
T ss_pred CCCcEEEEeccHHHHHHHHHHhcC-----CCc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEE
Confidence 356899999999999999999875 444 88899999999999999999999999999999999999999999999
Q ss_pred cCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC
Q psy3476 504 DSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG 543 (1417)
Q Consensus 504 dsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g 543 (1417)
. -.+ + -|+..+.||+||.=|..
T Consensus 356 ~--------~~~-t---------~S~~~~~Q~lGR~LR~~ 377 (442)
T COG1061 356 I--------LRP-T---------GSRRLFIQRLGRGLRPA 377 (442)
T ss_pred E--------eCC-C---------CcHHHHHHHhhhhccCC
Confidence 6 222 2 26677789999999954
|
|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.74 E-value=8e-17 Score=202.94 Aligned_cols=168 Identities=20% Similarity=0.280 Sum_probs=122.8
Q ss_pred CcEEEEccCC--CHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEE
Q psy3476 352 VKIILMSATI--NIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429 (1417)
Q Consensus 352 ~qvIlmSATl--n~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iL 429 (1417)
.++-+||.|. ..+.|.+.+ +.+++.+|... |..-...|...... ....+..+++.+.... ..+.++|
T Consensus 376 ~kl~GmTGTa~~e~~Ef~~iY--~l~vv~IPtnk-p~~r~d~~d~i~~t------~~~K~~al~~~i~~~~--~~g~pvL 444 (796)
T PRK12906 376 KKLSGMTGTAKTEEEEFREIY--NMEVITIPTNR-PVIRKDSPDLLYPT------LDSKFNAVVKEIKERH--AKGQPVL 444 (796)
T ss_pred chhhccCCCCHHHHHHHHHHh--CCCEEEcCCCC-CeeeeeCCCeEEcC------HHHHHHHHHHHHHHHH--hCCCCEE
Confidence 3788999999 345666666 56677777532 32222111111000 0112334555554433 3467999
Q ss_pred EEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCc---CCeE-----E
Q psy3476 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITI---DGIR-----F 501 (1417)
Q Consensus 430 VFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdI---P~V~-----~ 501 (1417)
|||++.+.++.+++.|.+ .++....||+.+...++..+-+++++|. |+||||+|+||.|| ++|. +
T Consensus 445 I~t~si~~se~ls~~L~~-----~gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~V~~~GGLh 517 (796)
T PRK12906 445 VGTVAIESSERLSHLLDE-----AGIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPGVKELGGLA 517 (796)
T ss_pred EEeCcHHHHHHHHHHHHH-----CCCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcchhhhCCcE
Confidence 999999999999999987 6788999999999999999999998886 99999999999999 4899 9
Q ss_pred EEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHH
Q psy3476 502 VVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQ 555 (1417)
Q Consensus 502 VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~ 555 (1417)
||+ ++.|.+.. .+.||.|||||.| ||.+..+++-++
T Consensus 518 VI~--------te~pes~r----------i~~Ql~GRtGRqG~~G~s~~~~sleD 554 (796)
T PRK12906 518 VIG--------TERHESRR----------IDNQLRGRSGRQGDPGSSRFYLSLED 554 (796)
T ss_pred EEe--------eecCCcHH----------HHHHHhhhhccCCCCcceEEEEeccc
Confidence 998 66665444 4559999999999 899987777653
|
|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.3e-17 Score=203.53 Aligned_cols=128 Identities=13% Similarity=0.114 Sum_probs=93.8
Q ss_pred CcEEEEccCC--CHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEE
Q psy3476 352 VKIILMSATI--NIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429 (1417)
Q Consensus 352 ~qvIlmSATl--n~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iL 429 (1417)
.|+-+||.|. ..+.|.+.+ +..++.+|... |+.-...|..... .....+..+++.+.+.+ ..+.++|
T Consensus 380 ~kLsGMTGTa~te~~Ef~~iY--~l~Vv~IPtnk-p~~R~d~~d~v~~------t~~~k~~av~~~i~~~~--~~g~PVL 448 (896)
T PRK13104 380 NKLSGMTGTADTEAYEFQQIY--NLEVVVIPTNR-SMIRKDEADLVYL------TQADKFQAIIEDVRECG--VRKQPVL 448 (896)
T ss_pred chhccCCCCChhHHHHHHHHh--CCCEEECCCCC-CcceecCCCeEEc------CHHHHHHHHHHHHHHHH--hCCCCEE
Confidence 4788999999 355777777 56777777532 2221111111000 00112445556565544 3577999
Q ss_pred EEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcC
Q psy3476 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITID 497 (1417)
Q Consensus 430 VFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP 497 (1417)
|||++.+.++.+++.|.+ .++....||+.+.+.++..+.++|++|. |+||||+|+||+||-
T Consensus 449 Vgt~Sie~sE~ls~~L~~-----~gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIATNmAGRGtDI~ 509 (896)
T PRK13104 449 VGTVSIEASEFLSQLLKK-----ENIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIATNMAGRGTDIV 509 (896)
T ss_pred EEeCcHHHHHHHHHHHHH-----cCCCeEeecCCCChHHHHHHHhCCCCCc--EEEeccCccCCccee
Confidence 999999999999999988 7889999999999999999999999994 999999999999985
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.8e-16 Score=207.96 Aligned_cols=117 Identities=22% Similarity=0.303 Sum_probs=87.8
Q ss_pred HHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhh----ccCCcEEEEecCCCCHHHHHHHhccCCCCCc-eEEEecchh
Q psy3476 416 IDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNE----KSQGWIVLPLHSTLSLEEQDRVFHYAPEGLR-KCIVSTNIA 490 (1417)
Q Consensus 416 l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~----~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~r-kVLVATnIa 490 (1417)
+.+.+....++++||||.++++++.+++.|.+... ......+..+||+.+ ++..+++.|+++.. +|+|+++++
T Consensus 689 l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL 766 (1123)
T PRK11448 689 LAKYLDPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLL 766 (1123)
T ss_pred HHHHHhccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEeccc
Confidence 33334333458999999999999999998876432 112235667888875 46779999999876 799999999
Q ss_pred hccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCC--Ce-EEEecC
Q psy3476 491 ETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP--GV-CYRLYS 552 (1417)
Q Consensus 491 e~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~--G~-cy~L~t 552 (1417)
.+|+|+|.|.+||. ++++. |+..|.||+||+.|..+ |+ ++.++.
T Consensus 767 ~TG~DvP~v~~vVf--------~rpvk----------S~~lf~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 767 TTGIDVPSICNLVF--------LRRVR----------SRILYEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred ccCCCcccccEEEE--------ecCCC----------CHHHHHHHHhhhccCCccCCCceEEEEe
Confidence 99999999999997 55554 55666799999999876 44 344444
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.2e-16 Score=198.20 Aligned_cols=196 Identities=21% Similarity=0.232 Sum_probs=147.4
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhc--cCceEEEeC-CcccceeEEec
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN--RIAKIIKVP-GRLYPIQLEYH 391 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~--~~~~vi~v~-gr~~pv~v~~~ 391 (1417)
-.+.+++++||||-| | |.-.--..+..++.++-++-||||+=+..+.--+. .+..+|..| .+.+||..+..
T Consensus 712 v~FkdLGLlIIDEEq-R-----FGVk~KEkLK~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~ 785 (1139)
T COG1197 712 VKFKDLGLLIIDEEQ-R-----FGVKHKEKLKELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVS 785 (1139)
T ss_pred cEEecCCeEEEechh-h-----cCccHHHHHHHHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEe
Confidence 457899999999999 3 22223344556678999999999994444432221 244555544 56688888776
Q ss_pred cccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHH
Q psy3476 392 PIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDR 471 (1417)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~ 471 (1417)
+.... .+-+.|.+.+ ..+|++-.-.|..+.|+.+++.|+++- +...+...||.|+..+-+.
T Consensus 786 ~~d~~--------------~ireAI~REl--~RgGQvfYv~NrV~~Ie~~~~~L~~LV---PEarI~vaHGQM~e~eLE~ 846 (1139)
T COG1197 786 EYDDL--------------LIREAILREL--LRGGQVFYVHNRVESIEKKAERLRELV---PEARIAVAHGQMRERELEE 846 (1139)
T ss_pred cCChH--------------HHHHHHHHHH--hcCCEEEEEecchhhHHHHHHHHHHhC---CceEEEEeecCCCHHHHHH
Confidence 54321 2333444443 348999999999999999999999866 6678999999999999999
Q ss_pred HhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceeccc-CCCccccceeecCHhhHHhhcCcCCCCC-CCeEEE
Q psy3476 472 VFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDV-TAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYR 549 (1417)
Q Consensus 472 v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~-~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~ 549 (1417)
++..|-+|...|||||.|.|+|||||+++-+|- .+. .-| -|+..|.+||+||.. .|+||.
T Consensus 847 vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiII--------e~AD~fG----------LsQLyQLRGRVGRS~~~AYAYf 908 (1139)
T COG1197 847 VMLDFYNGEYDVLVCTTIIETGIDIPNANTIII--------ERADKFG----------LAQLYQLRGRVGRSNKQAYAYF 908 (1139)
T ss_pred HHHHHHcCCCCEEEEeeeeecCcCCCCCceEEE--------ecccccc----------HHHHHHhccccCCccceEEEEE
Confidence 999999999999999999999999999976663 111 123 355669999999998 699999
Q ss_pred ecCH
Q psy3476 550 LYSE 553 (1417)
Q Consensus 550 L~t~ 553 (1417)
+|..
T Consensus 909 l~p~ 912 (1139)
T COG1197 909 LYPP 912 (1139)
T ss_pred eecC
Confidence 9975
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.2e-16 Score=197.21 Aligned_cols=128 Identities=16% Similarity=0.184 Sum_probs=92.8
Q ss_pred CcEEEEccCC--CHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEE
Q psy3476 352 VKIILMSATI--NIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429 (1417)
Q Consensus 352 ~qvIlmSATl--n~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iL 429 (1417)
.++.+||.|. ..+.|.+.+ +..++.+|... |+.-...|...... ....+..++..+.+.+ ..+.++|
T Consensus 366 ~kl~GmTGTa~te~~E~~~iY--~l~vv~IPtnk-p~~r~d~~d~i~~t------~~~K~~aI~~~I~~~~--~~grpVL 434 (830)
T PRK12904 366 EKLAGMTGTADTEAEEFREIY--NLDVVVIPTNR-PMIRIDHPDLIYKT------EKEKFDAVVEDIKERH--KKGQPVL 434 (830)
T ss_pred chhcccCCCcHHHHHHHHHHh--CCCEEEcCCCC-CeeeeeCCCeEEEC------HHHHHHHHHHHHHHHH--hcCCCEE
Confidence 3788999999 355677766 56777777532 33222222111100 0112345555555443 3467999
Q ss_pred EEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcC
Q psy3476 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITID 497 (1417)
Q Consensus 430 VFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP 497 (1417)
|||++.+.++.+++.|.+ .++....|||. +.+|+..+..|+.+...|+||||+|+||+||+
T Consensus 435 Ift~Si~~se~Ls~~L~~-----~gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~ 495 (830)
T PRK12904 435 VGTVSIEKSELLSKLLKK-----AGIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIK 495 (830)
T ss_pred EEeCcHHHHHHHHHHHHH-----CCCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCcc
Confidence 999999999999999987 67889999996 78899999999999999999999999999997
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-15 Score=190.80 Aligned_cols=128 Identities=17% Similarity=0.120 Sum_probs=92.9
Q ss_pred CcEEEEccCC--CHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEE
Q psy3476 352 VKIILMSATI--NIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429 (1417)
Q Consensus 352 ~qvIlmSATl--n~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iL 429 (1417)
.++-+||.|. ....|.+.+ +..++.+|... |+.-...+..... -....+..+++.+.+.+ ..+.+||
T Consensus 385 ~kL~GMTGTa~te~~Ef~~iY--~l~Vv~IPTnk-p~~R~d~~d~iy~------t~~~K~~Aii~ei~~~~--~~GrpVL 453 (908)
T PRK13107 385 EKLAGMTGTADTEAFEFQHIY--GLDTVVVPTNR-PMVRKDMADLVYL------TADEKYQAIIKDIKDCR--ERGQPVL 453 (908)
T ss_pred hHhhcccCCChHHHHHHHHHh--CCCEEECCCCC-CccceeCCCcEEe------CHHHHHHHHHHHHHHHH--HcCCCEE
Confidence 3788999998 344666666 56677777432 2211111111000 00122445666665554 3467999
Q ss_pred EEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcC
Q psy3476 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITID 497 (1417)
Q Consensus 430 VFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP 497 (1417)
|||++.+.++.+++.|.. .++....||+..+..++..+.++++.|. |+||||+|+||.||-
T Consensus 454 V~t~sv~~se~ls~~L~~-----~gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtIATnmAGRGTDIk 514 (908)
T PRK13107 454 VGTVSIEQSELLARLMVK-----EKIPHEVLNAKFHEREAEIVAQAGRTGA--VTIATNMAGRGTDIV 514 (908)
T ss_pred EEeCcHHHHHHHHHHHHH-----CCCCeEeccCcccHHHHHHHHhCCCCCc--EEEecCCcCCCccee
Confidence 999999999999999987 6788999999999999999999999998 999999999999985
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.5e-15 Score=190.70 Aligned_cols=116 Identities=20% Similarity=0.237 Sum_probs=96.1
Q ss_pred HHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCC--CceEEEecchhhcc
Q psy3476 416 IDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEG--LRKCIVSTNIAETS 493 (1417)
Q Consensus 416 l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G--~rkVLVATnIae~G 493 (1417)
+.+.+....+.++||||++++.+..+++.|+.. .++.+..+||+|++.+|+++.+.|+++ ..+|+|||+++++|
T Consensus 484 L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~----~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseG 559 (956)
T PRK04914 484 LIDFLKSHRSEKVLVICAKAATALQLEQALRER----EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCSEIGSEG 559 (956)
T ss_pred HHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc----cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEechhhccC
Confidence 333333344678999999999999999999541 578899999999999999999999874 58999999999999
Q ss_pred CCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCe--EEEecCH
Q psy3476 494 ITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGV--CYRLYSE 553 (1417)
Q Consensus 494 IdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~--cy~L~t~ 553 (1417)
+|++.+++||+ ||.|.+...|. ||+||+||.| .|. +|.++.+
T Consensus 560 lNlq~a~~VIn--------fDlP~nP~~~e----------QRIGR~~RiGQ~~~V~i~~~~~~ 604 (956)
T PRK04914 560 RNFQFASHLVL--------FDLPFNPDLLE----------QRIGRLDRIGQKHDIQIHVPYLE 604 (956)
T ss_pred CCcccccEEEE--------ecCCCCHHHHH----------HHhcccccCCCCceEEEEEccCC
Confidence 99999999999 99987766655 9999999999 443 4444443
|
|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.1e-15 Score=190.43 Aligned_cols=198 Identities=22% Similarity=0.332 Sum_probs=118.3
Q ss_pred ccEEEEecCcccccCcc-hHHHHHHHHhc-cCCCCcEEEEccCCCHH---HHHHHhccCceEEEeCCcccceeEEecccc
Q psy3476 320 YDVLVLDEIHERHLHGD-FLLGVIKCLLH-STAEVKIILMSATINIE---LFHTYFNRIAKIIKVPGRLYPIQLEYHPIV 394 (1417)
Q Consensus 320 ~~~VIlDEaHER~l~~d-~ll~llk~l~~-~r~~~qvIlmSATln~~---~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~ 394 (1417)
.+++|+||+| .+..+ .+..++..+.. ...+.++|+||||++.. .+.+++..+..+..... ..|....+.-
T Consensus 339 ~S~vIlDE~h--~~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~~~l~~~~~~~~~~~~~~~-~~~~~~e~~~-- 413 (733)
T COG1203 339 TSLVILDEVH--LYADETMLAALLALLEALAEAGVPVLLMSATLPPFLKEKLKKALGKGREVVENAK-FCPKEDEPGL-- 413 (733)
T ss_pred hhchhhccHH--hhcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHHHHHHHHHhcccceecccc-cccccccccc--
Confidence 5789999999 33333 33333332222 23578999999999743 44555533222221111 0010000000
Q ss_pred ccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhc
Q psy3476 395 ELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFH 474 (1417)
Q Consensus 395 ~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~ 474 (1417)
...........+.......+.... .++++++|-|||++.+.++++.|+.. +..+..+||.+...+|.+.++
T Consensus 414 --~~~~~~~~~~~~~~~~~~~~~~~~--~~~~kvlvI~NTV~~Aie~Y~~Lk~~-----~~~v~LlHSRf~~~dR~~ke~ 484 (733)
T COG1203 414 --KRKERVDVEDGPQEELIELISEEV--KEGKKVLVIVNTVDRAIELYEKLKEK-----GPKVLLLHSRFTLKDREEKER 484 (733)
T ss_pred --ccccchhhhhhhhHhhhhcchhhh--ccCCcEEEEEecHHHHHHHHHHHHhc-----CCCEEEEecccchhhHHHHHH
Confidence 000000000000001122222222 45789999999999999999999873 227999999999999998877
Q ss_pred cC----CCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeE
Q psy3476 475 YA----PEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVC 547 (1417)
Q Consensus 475 ~f----~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~c 547 (1417)
.. ..+.-.|+|||++.|.||||+ .+++| +...+-.+..||+||.+|.| +|..
T Consensus 485 ~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mI--------------------Te~aPidSLIQR~GRv~R~g~~~~~~~ 543 (733)
T COG1203 485 ELKKLFKQNEGFIVVATQVIEAGVDID-FDVLI--------------------TELAPIDSLIQRAGRVNRHGKKENGKI 543 (733)
T ss_pred HHHHHHhccCCeEEEEeeEEEEEeccc-cCeee--------------------ecCCCHHHHHHHHHHHhhcccccCCce
Confidence 43 456778999999999999997 44444 23334455569999999999 4666
Q ss_pred EEecC
Q psy3476 548 YRLYS 552 (1417)
Q Consensus 548 y~L~t 552 (1417)
|..-.
T Consensus 544 ~v~~~ 548 (733)
T COG1203 544 YVYND 548 (733)
T ss_pred eEeec
Confidence 65443
|
|
| >KOG0329|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.1e-15 Score=162.37 Aligned_cols=170 Identities=24% Similarity=0.336 Sum_probs=115.4
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCC--HHHHHHHhccCceEEEeCCc----ccceeE
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATIN--IELFHTYFNRIAKIIKVPGR----LYPIQL 388 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln--~~~~~~~f~~~~~vi~v~gr----~~pv~v 388 (1417)
..|++++++|+||++....+.|....+-.+....+.+.|++.+|||++ ..-...-|..++--+.++.. .+.+..
T Consensus 181 l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ 260 (387)
T KOG0329|consen 181 LNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQ 260 (387)
T ss_pred CchhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHH
Confidence 357789999999999666666777777777777888999999999995 33444444343332333221 122223
Q ss_pred EeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHH
Q psy3476 389 EYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEE 468 (1417)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~e 468 (1417)
+|........ ..++.++++. .+-.+++||+.+...+.
T Consensus 261 ~YvkLke~eK----------Nrkl~dLLd~----LeFNQVvIFvKsv~Rl~----------------------------- 297 (387)
T KOG0329|consen 261 YYVKLKENEK----------NRKLNDLLDV----LEFNQVVIFVKSVQRLS----------------------------- 297 (387)
T ss_pred HHHhhhhhhh----------hhhhhhhhhh----hhhcceeEeeehhhhhh-----------------------------
Confidence 3322111110 1122222221 23568999998765411
Q ss_pred HHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeE
Q psy3476 469 QDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVC 547 (1417)
Q Consensus 469 R~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~c 547 (1417)
| ..+ +|||++..+|+||..|+.|+| ||.|.+..+|. ||.|||||.| .|.+
T Consensus 298 -------f---~kr-~vat~lfgrgmdiervNi~~N--------Ydmp~~~DtYl----------Hrv~rAgrfGtkgla 348 (387)
T KOG0329|consen 298 -------F---QKR-LVATDLFGRGMDIERVNIVFN--------YDMPEDSDTYL----------HRVARAGRFGTKGLA 348 (387)
T ss_pred -------h---hhh-hHHhhhhccccCcccceeeec--------cCCCCCchHHH----------HHhhhhhccccccce
Confidence 1 123 899999999999999999999 99998877776 9999999999 7999
Q ss_pred EEecCHHHH
Q psy3476 548 YRLYSEEQY 556 (1417)
Q Consensus 548 y~L~t~~~~ 556 (1417)
+.+.+.+.-
T Consensus 349 itfvs~e~d 357 (387)
T KOG0329|consen 349 ITFVSDEND 357 (387)
T ss_pred eehhcchhh
Confidence 999876544
|
|
| >PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.1e-16 Score=151.72 Aligned_cols=91 Identities=24% Similarity=0.282 Sum_probs=64.5
Q ss_pred HHHHHHhhccccccccccchhhhhcccCCCCccccchhhhcccccchhhHHHHHHhhccccccchhhhccc---------
Q psy3476 871 SSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVTSL--------- 941 (1417)
Q Consensus 871 ~A~~~L~~lgald~~~~lT~lG~~l~~lPvdp~lak~Ll~~~~~~cl~~~l~i~a~ls~~~~~~~~~~~~~--------- 941 (1417)
+|++.|+.+||||++++||++|+.|+.||++|++||||+.|+.++|++++++|||+||.++++..+...+.
T Consensus 1 ~A~~~L~~Lgald~~~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~~~f~~~~~~~~~~~~~~~~~ 80 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSVRSPFINPDDKEENAEQDNAKK 80 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS--B---CCGHHHHHH--HHH
T ss_pred CHHHHHHHCCCCCCCCCcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcCCCcccCccHHHHHHHHHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999998777532211
Q ss_pred --ccccCCCCccCCCCCccccc
Q psy3476 942 --GRFLSDLPVDIPLGKMLVFG 961 (1417)
Q Consensus 942 --~~~~~~~~f~~~~gd~lt~l 961 (1417)
.....+..+.++.|||+|||
T Consensus 81 ~~~~~~~~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 81 KFRIKQARKKFSDDESDHLTLL 102 (102)
T ss_dssp TT----------BTTBHHHHHH
T ss_pred HhhhhhcccccCCCCCCHHhcC
Confidence 23456788999999999986
|
It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B. |
| >KOG0353|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.2e-14 Score=157.30 Aligned_cols=215 Identities=19% Similarity=0.213 Sum_probs=136.9
Q ss_pred CccEEEEecCcccccCc-chHHHH--HHHHhccCCCCcEEEEccCCCHH---HHHHHhcc-CceEEEeCCcccceeEEec
Q psy3476 319 SYDVLVLDEIHERHLHG-DFLLGV--IKCLLHSTAEVKIILMSATINIE---LFHTYFNR-IAKIIKVPGRLYPIQLEYH 391 (1417)
Q Consensus 319 ~~~~VIlDEaHER~l~~-d~ll~l--lk~l~~~r~~~qvIlmSATln~~---~~~~~f~~-~~~vi~v~gr~~pv~v~~~ 391 (1417)
-+..|-+||+|.-+-++ ||..++ +..+.+..++..+|+++||.... +..+.+.- .+-.+... .....+.|.
T Consensus 215 ~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~il~ie~~~tf~a~--fnr~nl~ye 292 (695)
T KOG0353|consen 215 FFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDILCIEAAFTFRAG--FNRPNLKYE 292 (695)
T ss_pred eeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHHHhHHhhheeecc--cCCCCceeE
Confidence 36788899999554443 454333 44555677899999999998322 22222210 11111111 000111111
Q ss_pred cccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHH
Q psy3476 392 PIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDR 471 (1417)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~ 471 (1417)
...... ...+....+...|...+ .+..-||||-++++++.++..|+. .++....+|+.|.++++..
T Consensus 293 v~qkp~------n~dd~~edi~k~i~~~f---~gqsgiiyc~sq~d~ekva~alkn-----~gi~a~~yha~lep~dks~ 358 (695)
T KOG0353|consen 293 VRQKPG------NEDDCIEDIAKLIKGDF---AGQSGIIYCFSQKDCEKVAKALKN-----HGIHAGAYHANLEPEDKSG 358 (695)
T ss_pred eeeCCC------ChHHHHHHHHHHhcccc---CCCcceEEEeccccHHHHHHHHHh-----cCccccccccccCcccccc
Confidence 110000 01122344555544333 244569999999999999999987 7888999999999999999
Q ss_pred HhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCcccccee---------------------ecCH-
Q psy3476 472 VFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEF---------------------WISK- 529 (1417)
Q Consensus 472 v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~---------------------~ISk- 529 (1417)
+-+..-.|++.|||||-...+|||-|+|++||+ ...|..+..|... -|..
T Consensus 359 ~hq~w~a~eiqvivatvafgmgidkpdvrfvih--------hsl~ksienyyqasarillrmtkqknksdtggstqinil 430 (695)
T KOG0353|consen 359 AHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIH--------HSLPKSIENYYQASARILLRMTKQKNKSDTGGSTQINIL 430 (695)
T ss_pred ccccccccceEEEEEEeeecccCCCCCeeEEEe--------cccchhHHHHHHHHHHHHHHHhhhcccccCCCcceeehh
Confidence 999999999999999999999999999999999 3444444333300 0000
Q ss_pred ----------h-hHHhhcCcCCCCC-CCeEEEecCHHHHH
Q psy3476 530 ----------A-SAEQRKGRAGRTG-PGVCYRLYSEEQYS 557 (1417)
Q Consensus 530 ----------a-sa~QR~GRAGR~g-~G~cy~L~t~~~~~ 557 (1417)
+ =.....|||||.+ +..|+..|.-.+..
T Consensus 431 evctnfkiffavfsekesgragrd~~~a~cilyy~~~dif 470 (695)
T KOG0353|consen 431 EVCTNFKIFFAVFSEKESGRAGRDDMKADCILYYGFADIF 470 (695)
T ss_pred hhhccceeeeeeecchhccccccCCCcccEEEEechHHHH
Confidence 0 0001689999999 89999888765543
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.3e-15 Score=190.20 Aligned_cols=107 Identities=13% Similarity=0.228 Sum_probs=95.4
Q ss_pred hhhhhHHHhhhccccccCCCcccccccHHHHhhhhcCCccchhhcc---hHHHHHHHHHhcCCCcccCCCCCCCCccchH
Q psy3476 794 IEEEEEEEEGERLESRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVS---IDSLLLSLVCMGLGDVRKFPFLEAPPAENIE 870 (1417)
Q Consensus 794 ~~s~~~~~qR~~~agR~~pG~CyRLyt~~~~~~l~~~~~PEI~r~~---L~~~vL~lk~~g~~~~~~f~~l~~P~~~~l~ 870 (1417)
-+|++++.||+|||||++||.||||||++++ .| |+|++ |++++|++|+||++.+ .+.|+|||+.+++.
T Consensus 486 ~iSkasa~QRaGRAGR~~~G~c~rLyt~~~~-------~p-I~ri~~~~L~~~vL~lk~~g~~~~-~~~~ldpP~~~~l~ 556 (675)
T PHA02653 486 FISKSMRTQRKGRVGRVSPGTYVYFYDLDLL-------KP-IKRIDSEFLHNYILYAKYFNLTLP-EDLFVIPSNLDRLR 556 (675)
T ss_pred ccCHHHHHHhccCcCCCCCCeEEEEECHHHh-------HH-HHHHhHHHHHHHHHHHHHcCCCCc-ccccCCCCCHHHHH
Confidence 3799999999999999999999999999875 24 66666 8999999999999655 45599999999999
Q ss_pred HHHHHHhhccccccccccchh--hhhcccCCCCccccchhhhccccc
Q psy3476 871 SSVRSLTQHGAIDSKERVTTL--GRFLSDLPVDIPLGKMLVFGSMFH 915 (1417)
Q Consensus 871 ~A~~~L~~lgald~~~~lT~l--G~~l~~lPvdp~lak~Ll~~~~~~ 915 (1417)
+|++.|..+||+|+ +||.+ |+.|+.+ ++||++++|+...
T Consensus 557 ~A~~~L~~lga~~~--~l~~l~~~~~~~~~----~~~k~~~~g~~~~ 597 (675)
T PHA02653 557 KTEEYIDSFNISIE--KWYEILSNYYVNML----EYAKIYVKGGILA 597 (675)
T ss_pred HHHHHHHHcCCCch--hhhhhhccccHHHH----HHhHHHhcccHhH
Confidence 99999999999876 79999 9999999 9999999986543
|
|
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.7e-13 Score=170.51 Aligned_cols=102 Identities=13% Similarity=0.072 Sum_probs=75.8
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC--CcEEEecchHHHHHHHHHHHHHHHccccCCeEEEEEe
Q psy3476 40 VAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF--QRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117 (1417)
Q Consensus 40 ~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~--~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy~ir 117 (1417)
+..+|.+++..+..++.+|..++||+|||..+..+++.... ..+.+..|+|.+|.+.++.+ ..+...+|-+||..+.
T Consensus 93 ~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m-~~L~k~lGLsV~~i~G 171 (970)
T PRK12899 93 MVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWV-GSVLRWLGLTTGVLVS 171 (970)
T ss_pred CChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHH-HHHHhhcCCeEEEEeC
Confidence 88899999999999999999999999999987777664432 23556677888888888754 4445567778887654
Q ss_pred ecccc----cCCccEEEEccchh-HHhhcC
Q psy3476 118 FEKHR----REKTKIVFITEGLL-LRQDSG 142 (1417)
Q Consensus 118 ~e~~~----~~~t~I~~~T~g~l-lr~l~~ 142 (1417)
..... .-.+.|+|+|||.| ++.+..
T Consensus 172 G~~~~eq~~~y~~DIVygTPgRLgfDyLrd 201 (970)
T PRK12899 172 GSPLEKRKEIYQCDVVYGTASEFGFDYLRD 201 (970)
T ss_pred CCCHHHHHHHcCCCEEEECCChhHHHHhhC
Confidence 32221 12478999999999 777643
|
|
| >KOG0349|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.7e-14 Score=159.50 Aligned_cols=109 Identities=18% Similarity=0.312 Sum_probs=94.5
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVV 503 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VI 503 (1417)
...+.+|||.|+.+|+.+.+.+++... ..+.+.++||+..+.||.+.++.|+.+..|.+|||++|++|+||.++-++|
T Consensus 504 ~mdkaiifcrtk~dcDnLer~~~qkgg--~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~i 581 (725)
T KOG0349|consen 504 AMDKAIIFCRTKQDCDNLERMMNQKGG--KHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMI 581 (725)
T ss_pred ccCceEEEEeccccchHHHHHHHHcCC--ccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEE
Confidence 346899999999999999999987443 568999999999999999999999999999999999999999999999999
Q ss_pred cCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecC
Q psy3476 504 DSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYS 552 (1417)
Q Consensus 504 dsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t 552 (1417)
| -..|. .+.+|.||+||+||.. -|.++.|+.
T Consensus 582 n--------vtlpd----------~k~nyvhrigrvgraermglaislva 613 (725)
T KOG0349|consen 582 N--------VTLPD----------DKTNYVHRIGRVGRAERMGLAISLVA 613 (725)
T ss_pred E--------EecCc----------ccchhhhhhhccchhhhcceeEEEee
Confidence 9 33343 4455669999999998 599888874
|
|
| >PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.6e-14 Score=141.79 Aligned_cols=91 Identities=40% Similarity=0.646 Sum_probs=67.8
Q ss_pred HHHHHHHhcCCCCCCCCcChhhhhccCCCCChhhHHHHHhhhccCChhhHHHHhhhccCCCccccCCCCChhHH--HHHh
Q psy3476 603 SSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCE--TARK 680 (1417)
Q Consensus 603 ~Al~~L~~lGaId~~~~lT~LG~~ls~lpldp~lak~Ll~~~~f~cle~vl~IaA~Lsv~~~F~~~~~~~~~~~--~~r~ 680 (1417)
.|++.|+.+||||.+++||++|+.|+.||++|++||||+.|..++|++++++|+|+||+.++|..+...+...+ ..++
T Consensus 1 ~A~~~L~~Lgald~~~~lT~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~~~f~~~~~~~~~~~~~~~~~ 80 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLTPLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSVRSPFINPDDKEENAEQDNAKK 80 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B-HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS--B---CCGHHHHHH--HHH
T ss_pred CHHHHHHHCCCCCCCCCcCHHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcCCCcccCccHHHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999998755443322 2333
Q ss_pred h---------cccCCCChHHHH
Q psy3476 681 E---------LESNHGDPLTVL 693 (1417)
Q Consensus 681 ~---------f~~~~sD~ltll 693 (1417)
+ +.+..|||+|++
T Consensus 81 ~~~~~~~~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 81 KFRIKQARKKFSDDESDHLTLL 102 (102)
T ss_dssp TT----------BTTBHHHHHH
T ss_pred HhhhhhcccccCCCCCCHHhcC
Confidence 3 467789999986
|
It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B. |
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.8e-13 Score=171.90 Aligned_cols=125 Identities=21% Similarity=0.191 Sum_probs=103.4
Q ss_pred HHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecch
Q psy3476 410 IRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489 (1417)
Q Consensus 410 ~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnI 489 (1417)
..++..+.+.. ..+.++||||++++.++.+++.|.+ .++.+..+||++++.+|.++++.|++|+..|+|||++
T Consensus 429 ~~Ll~eI~~~~--~~g~~vLIf~~tk~~ae~L~~~L~~-----~gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~ 501 (655)
T TIGR00631 429 DDLLSEIRQRV--ARNERVLVTTLTKKMAEDLTDYLKE-----LGIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINL 501 (655)
T ss_pred HHHHHHHHHHH--cCCCEEEEEECCHHHHHHHHHHHhh-----hccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcCh
Confidence 34555555443 3467899999999999999999987 5678999999999999999999999999999999999
Q ss_pred hhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHH
Q psy3476 490 AETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEE 554 (1417)
Q Consensus 490 ae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~ 554 (1417)
+++|+|+|++++||. +|... ...+-|..++.||+|||||..+|.|+.+++..
T Consensus 502 L~rGfDiP~v~lVvi--------~Dadi-----fG~p~~~~~~iqriGRagR~~~G~vi~~~~~~ 553 (655)
T TIGR00631 502 LREGLDLPEVSLVAI--------LDADK-----EGFLRSERSLIQTIGRAARNVNGKVIMYADKI 553 (655)
T ss_pred hcCCeeeCCCcEEEE--------eCccc-----ccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCC
Confidence 999999999999998 55321 11234566777999999999999999887654
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-12 Score=164.94 Aligned_cols=228 Identities=17% Similarity=0.203 Sum_probs=137.9
Q ss_pred ccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHH----HHHHhccCCCCcEEEEccCCCHHHHHHHh
Q psy3476 295 DFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGV----IKCLLHSTAEVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 295 d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~l----lk~l~~~r~~~qvIlmSATln~~~~~~~f 370 (1417)
.+++||...++ ..+.++++|||||-|+-++..+-...+ +..+.....+..+|+-|||...+.+..-.
T Consensus 298 ~vVIGtRSAlF---------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~~Ra~~~~~pvvLgSATPSLES~~~~~ 368 (730)
T COG1198 298 RVVIGTRSALF---------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAVLRAKKENAPVVLGSATPSLESYANAE 368 (730)
T ss_pred eEEEEechhhc---------CchhhccEEEEeccccccccCCcCCCcCHHHHHHHHHHHhCCCEEEecCCCCHHHHHhhh
Confidence 46678888887 779999999999999655433211111 11122233578999999999999888776
Q ss_pred ccCceEEEeCCccc---ceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHH----------
Q psy3476 371 NRIAKIIKVPGRLY---PIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISE---------- 437 (1417)
Q Consensus 371 ~~~~~vi~v~gr~~---pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~e---------- 437 (1417)
.+....+.+..|.. +..+...............+ ...+++.|.+.+ ..+.++|+|+|.+.-
T Consensus 369 ~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~l----S~~Ll~~i~~~l--~~geQ~llflnRRGys~~l~C~~Cg 442 (730)
T COG1198 369 SGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSL----SPALLEAIRKTL--ERGEQVLLFLNRRGYAPLLLCRDCG 442 (730)
T ss_pred cCceEEEEccccccccCCCcceEEeccccccccCccC----CHHHHHHHHHHH--hcCCeEEEEEccCCccceeecccCC
Confidence 55566676666644 33333332222111111111 123444444443 234566666633221
Q ss_pred --------------------------------------------------HHHHHHHHHhhhhccCCcEEEEecCCCCHH
Q psy3476 438 --------------------------------------------------ISSIVRAAQEYNEKSQGWIVLPLHSTLSLE 467 (1417)
Q Consensus 438 --------------------------------------------------ie~la~~L~~~~~~~~~~~V~~LHs~Ls~~ 467 (1417)
++++.+.|.++. ++..+..+-++....
T Consensus 443 ~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~F---P~~rv~r~d~Dtt~~ 519 (730)
T COG1198 443 YIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRLF---PGARIIRIDSDTTRR 519 (730)
T ss_pred CcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHHC---CCCcEEEEccccccc
Confidence 233334444433 566777777776654
Q ss_pred H--HHHHhccCCCCCceEEEecchhhccCCcCCeEEEE--cCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC
Q psy3476 468 E--QDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVV--DSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG 543 (1417)
Q Consensus 468 e--R~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VI--dsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g 543 (1417)
. =+..+..|.+|+..|||.|++++.|.|+|+++.|. | -|.--+..+|...--.-.-+.|-+|||||.+
T Consensus 520 k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~--------aD~~L~~~DfRA~Er~fqll~QvaGRAgR~~ 591 (730)
T COG1198 520 KGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLD--------ADTGLGSPDFRASERTFQLLMQVAGRAGRAG 591 (730)
T ss_pred hhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEe--------chhhhcCCCcchHHHHHHHHHHHHhhhccCC
Confidence 3 34678899999999999999999999999999774 2 2222222233211122234569999999996
Q ss_pred -CCeEE
Q psy3476 544 -PGVCY 548 (1417)
Q Consensus 544 -~G~cy 548 (1417)
+|.++
T Consensus 592 ~~G~Vv 597 (730)
T COG1198 592 KPGEVV 597 (730)
T ss_pred CCCeEE
Confidence 78765
|
|
| >smart00847 HA2 Helicase associated domain (HA2) Add an annotation | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.1e-14 Score=139.87 Aligned_cols=90 Identities=23% Similarity=0.293 Sum_probs=77.9
Q ss_pred HHHHHHhhccccccccccchhhhhcccCCCCccccchhhhcccc-cchhhHHHHHHhhccccccchhhhcccccccCCCC
Q psy3476 871 SSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMF-HQIDTMLLLDLALNFGAIDSKERVTSLGRFLSDLP 949 (1417)
Q Consensus 871 ~A~~~L~~lgald~~~~lT~lG~~l~~lPvdp~lak~Ll~~~~~-~cl~~~l~i~a~ls~~~~~~~~~~~~~~~~~~~~~ 949 (1417)
+|++.|+.+||||++|+||++|+.|+.||++|++||||+.|+.+ +|.+++++|+|+++.++++.+. .+....+..+..
T Consensus 1 ~A~~~L~~LgAld~~~~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~~~~~~-~~~~~~~~~~~~ 79 (92)
T smart00847 1 AALELLYELGALDDDGRLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGDPFPRP-EKRAEADAARRR 79 (92)
T ss_pred CHHHHHHHCCCcCCCCCcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCcCCc-hHHHHHHHHHHH
Confidence 47899999999999999999999999999999999999999999 9999999999999988865544 334445556667
Q ss_pred ccCC-CCCccccc
Q psy3476 950 VDIP-LGKMLVFG 961 (1417)
Q Consensus 950 f~~~-~gd~lt~l 961 (1417)
|... .|||++++
T Consensus 80 ~~~~~~~D~~~~l 92 (92)
T smart00847 80 FASGRESDHLTLL 92 (92)
T ss_pred ccCCCCCChhhhC
Confidence 7777 89999874
|
This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding. |
| >KOG0949|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.5e-12 Score=154.24 Aligned_cols=97 Identities=21% Similarity=0.201 Sum_probs=76.3
Q ss_pred EEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhc
Q psy3476 457 VLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRK 536 (1417)
Q Consensus 457 V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~ 536 (1417)
+..+|+||...+|..|+-.|+.|...|++||.+++-|||.|..++|.- ..+++ ...-.|.|++
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~--------------gDsLQ---L~plny~Qma 1027 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFA--------------GDSLQ---LDPLNYKQMA 1027 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEe--------------ccccc---cCchhHHhhh
Confidence 556699999999999999999999999999999999999998888874 12333 4556788999
Q ss_pred CcCCCCC---CCeEE-EecCHHHHHHhhccCCCccccc
Q psy3476 537 GRAGRTG---PGVCY-RLYSEEQYSLLAEYSTPEIRRV 570 (1417)
Q Consensus 537 GRAGR~g---~G~cy-~L~t~~~~~~l~~~~~pEI~r~ 570 (1417)
|||||.| -|.+. .=++.....++.-...|.|+-.
T Consensus 1028 GRAGRRGFD~lGnV~FmgiP~~kv~rLlts~L~diqG~ 1065 (1330)
T KOG0949|consen 1028 GRAGRRGFDTLGNVVFMGIPRQKVQRLLTSLLPDIQGA 1065 (1330)
T ss_pred ccccccccccccceEEEeCcHHHHHHHHHHhhhcccCC
Confidence 9999999 47664 4466666666555555665543
|
|
| >smart00847 HA2 Helicase associated domain (HA2) Add an annotation | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.5e-13 Score=129.52 Aligned_cols=90 Identities=36% Similarity=0.601 Sum_probs=80.4
Q ss_pred HHHHHHHhcCCCCCCCCcChhhhhccCCCCChhhHHHHHhhhcc-CChhhHHHHhhhccCCCccccCCCCChhHHHHHhh
Q psy3476 603 SSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMF-HQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKE 681 (1417)
Q Consensus 603 ~Al~~L~~lGaId~~~~lT~LG~~ls~lpldp~lak~Ll~~~~f-~cle~vl~IaA~Lsv~~~F~~~~~~~~~~~~~r~~ 681 (1417)
+|++.|+.+||||.++++|++|+.|+.||++|++||||+.+..+ +|.+++++|+|++++.++|..+ ....+....++.
T Consensus 1 ~A~~~L~~LgAld~~~~lT~lG~~m~~lPl~Prla~~Ll~a~~~~~c~~~~~~i~a~ls~~~~~~~~-~~~~~~~~~~~~ 79 (92)
T smart00847 1 AALELLYELGALDDDGRLTPLGRKMAELPLDPRLAKMLLAAAELFGCLDEILTIAAMLSVGDPFPRP-EKRAEADAARRR 79 (92)
T ss_pred CHHHHHHHCCCcCCCCCcCHHHHHHHHCCCChHHHHHHHHHHhhcCcHHHHHHHHHHhcCCCCcCCc-hHHHHHHHHHHH
Confidence 37899999999999999999999999999999999999999999 8999999999999999998766 445566677788
Q ss_pred cccC-CCChHHHH
Q psy3476 682 LESN-HGDPLTVL 693 (1417)
Q Consensus 682 f~~~-~sD~ltll 693 (1417)
|... .|||++++
T Consensus 80 ~~~~~~~D~~~~l 92 (92)
T smart00847 80 FASGRESDHLTLL 92 (92)
T ss_pred ccCCCCCChhhhC
Confidence 8887 89999863
|
This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding. |
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.38 E-value=5.2e-11 Score=147.53 Aligned_cols=154 Identities=16% Similarity=0.228 Sum_probs=100.5
Q ss_pred HHHHHHHhhCCC--C--CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccC-CCCCceEEE
Q psy3476 411 RILSIIDKKYPR--T--ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYA-PEGLRKCIV 485 (1417)
Q Consensus 411 ~il~~l~~~~~~--~--~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f-~~G~rkVLV 485 (1417)
.+...+.+.+.. . ..+++||||.+..+++.+.+.+.+..++..+--+..+.+.-...+ ..+-+-+ ++...+|.+
T Consensus 408 ~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~~~~q-~~Id~f~~ke~~P~Iai 486 (875)
T COG4096 408 TVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGDAEQAQ-ALIDNFIDKEKYPRIAI 486 (875)
T ss_pred HHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEeccchhhH-HHHHHHHhcCCCCceEE
Confidence 344445444443 1 247899999999999999999988776655555666666654333 3222222 344568999
Q ss_pred ecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCC--C------eEEEec---CHH
Q psy3476 486 STNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP--G------VCYRLY---SEE 554 (1417)
Q Consensus 486 ATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~--G------~cy~L~---t~~ 554 (1417)
+.+.+.+|||+|.|..+|- +..- -|+.-++||+||+-|..+ | ..|.++ ..-
T Consensus 487 tvdlL~TGiDvpev~nlVF---------~r~V---------rSktkF~QMvGRGTRl~~~~~~~~~dK~~F~ifDf~~~~ 548 (875)
T COG4096 487 TVDLLTTGVDVPEVVNLVF---------DRKV---------RSKTKFKQMVGRGTRLCPDLGGPEQDKEFFTIFDFVDNT 548 (875)
T ss_pred ehhhhhcCCCchheeeeee---------hhhh---------hhHHHHHHHhcCccccCccccCccccceeEEEEEhhhhh
Confidence 9999999999999987773 2211 378889999999999863 3 233333 333
Q ss_pred HHHHhhccCCCcccccChHHHHHHHHhhC
Q psy3476 555 QYSLLAEYSTPEIRRVSIDSLLLSLVCMG 583 (1417)
Q Consensus 555 ~~~~l~~~~~pEI~r~~L~~~lL~lk~lg 583 (1417)
++-.+.+...+.-.+.++..-++.-....
T Consensus 549 ~~~~~~~~~~e~~~~~~l~~rLF~~~~~~ 577 (875)
T COG4096 549 EYFEMDPEMREGRVRVSLEQRLFADRLFD 577 (875)
T ss_pred hhhccCcccccccccchHHHHHhhhhhcc
Confidence 44455555666666666666555544433
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=6e-11 Score=147.50 Aligned_cols=167 Identities=22% Similarity=0.215 Sum_probs=107.7
Q ss_pred CcEEEEccCC--CHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEE
Q psy3476 352 VKIILMSATI--NIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429 (1417)
Q Consensus 352 ~qvIlmSATl--n~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iL 429 (1417)
.++-+||.|. ..+.|.+.+ +.+++.+|.. .|+.-...|...... ....+..+++.+.+.+ ..+.+||
T Consensus 363 ~kLsGMTGTa~t~~~Ef~~iY--~l~Vv~IPtn-kp~~R~d~~d~iy~t------~~~k~~Aii~ei~~~~--~~GrPVL 431 (764)
T PRK12326 363 PTVCGMTGTAVAAGEQLRQFY--DLGVSVIPPN-KPNIREDEADRVYAT------AAEKNDAIVEHIAEVH--ETGQPVL 431 (764)
T ss_pred chheeecCCChhHHHHHHHHh--CCcEEECCCC-CCceeecCCCceEeC------HHHHHHHHHHHHHHHH--HcCCCEE
Confidence 4788999999 466777777 4667777754 232211111111000 0112445666665554 3477999
Q ss_pred EEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcC------------
Q psy3476 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITID------------ 497 (1417)
Q Consensus 430 VFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP------------ 497 (1417)
|.+.+.++.+.+++.|.+ .++....|++.-...|-..|-++-+.| .|.||||.|.||-||.
T Consensus 432 Vgt~sI~~SE~ls~~L~~-----~gI~h~vLNAk~~~~EA~IIa~AG~~g--aVTIATNMAGRGTDIkLg~~~~~~~~~V 504 (764)
T PRK12326 432 VGTHDVAESEELAERLRA-----AGVPAVVLNAKNDAEEARIIAEAGKYG--AVTVSTQMAGRGTDIRLGGSDEADRDRV 504 (764)
T ss_pred EEeCCHHHHHHHHHHHHh-----CCCcceeeccCchHhHHHHHHhcCCCC--cEEEEecCCCCccCeecCCCcccchHHH
Confidence 999999999999999987 567777788775544444444444444 6999999999999985
Q ss_pred ---CeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHH
Q psy3476 498 ---GIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEE 554 (1417)
Q Consensus 498 ---~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~ 554 (1417)
+=-+||-+.+ +-|+--=.|-.|||||.| ||.+-.+.|-+
T Consensus 505 ~~~GGLhVIgTer------------------heSrRID~QLrGRaGRQGDpGss~f~lSle 547 (764)
T PRK12326 505 AELGGLHVIGTGR------------------HRSERLDNQLRGRAGRQGDPGSSVFFVSLE 547 (764)
T ss_pred HHcCCcEEEeccC------------------CchHHHHHHHhcccccCCCCCceeEEEEcc
Confidence 1224554332 223334459999999999 89876565544
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.8e-12 Score=159.49 Aligned_cols=169 Identities=19% Similarity=0.228 Sum_probs=119.5
Q ss_pred CcEEEEccCC--CHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEE
Q psy3476 352 VKIILMSATI--NIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429 (1417)
Q Consensus 352 ~qvIlmSATl--n~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iL 429 (1417)
.|+-+|+.|. ....|.+.+ +..++.+|... |+.-...+... + .-....+..++..+.... ..+.++|
T Consensus 534 ~kLaGMTGTA~te~~Ef~~iY--~L~Vv~IPTnr-P~~R~D~~d~v--y----~t~~eK~~Ali~~I~~~~--~~grpVL 602 (1025)
T PRK12900 534 KKLAGMTGTAETEASEFFEIY--KLDVVVIPTNK-PIVRKDMDDLV--Y----KTRREKYNAIVLKVEELQ--KKGQPVL 602 (1025)
T ss_pred hhhcccCCCChhHHHHHHHHh--CCcEEECCCCC-CcceecCCCeE--e----cCHHHHHHHHHHHHHHHh--hCCCCEE
Confidence 4788899998 355677766 56677776432 22211111100 0 000112344555554443 3467999
Q ss_pred EEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcC---CeEE-----
Q psy3476 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITID---GIRF----- 501 (1417)
Q Consensus 430 VFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP---~V~~----- 501 (1417)
|||+|++.++.+++.|.. .++....||+ .+.+|+..+..|+.+...|+||||+|+||+||+ +|..
T Consensus 603 Ift~Sve~sE~Ls~~L~~-----~gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~ 675 (1025)
T PRK12900 603 VGTASVEVSETLSRMLRA-----KRIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLF 675 (1025)
T ss_pred EEeCcHHHHHHHHHHHHH-----cCCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCce
Confidence 999999999999999987 6788889997 578899999999999999999999999999999 5533
Q ss_pred EEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHH
Q psy3476 502 VVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQY 556 (1417)
Q Consensus 502 VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~ 556 (1417)
||+ ++.+. |...+.||+|||||.| ||.+..+++.++.
T Consensus 676 VIg--------terhe----------s~Rid~Ql~GRtGRqGdpGsS~ffvSleD~ 713 (1025)
T PRK12900 676 ILG--------SERHE----------SRRIDRQLRGRAGRQGDPGESVFYVSLEDE 713 (1025)
T ss_pred eeC--------CCCCc----------hHHHHHHHhhhhhcCCCCcceEEEechhHH
Confidence 355 33333 4445569999999999 8999988887654
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-11 Score=130.49 Aligned_cols=64 Identities=20% Similarity=0.197 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC----CCcEEEecchHHHHHHHHHHHHHHHc
Q psy3476 42 QYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG----FQRIACTQPRRIACISLSKRVAYETL 105 (1417)
Q Consensus 42 ~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~----~~~i~~tqPrr~aa~~~a~rva~e~~ 105 (1417)
++|.++++.+.++++++|.||||||||+.+..+++... ..++++..|++..+.++.+++.....
T Consensus 2 ~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~ 69 (169)
T PF00270_consen 2 PLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFS 69 (169)
T ss_dssp HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccccc
Confidence 67999999999999999999999999998877765532 23899999999999999887766543
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=99.32 E-value=2.3e-11 Score=155.95 Aligned_cols=99 Identities=10% Similarity=-0.023 Sum_probs=70.5
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHH---------------------HHHHHhccCCC-CCce
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLE---------------------EQDRVFHYAPE-GLRK 482 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~---------------------eR~~v~~~f~~-G~rk 482 (1417)
+++.+|||.++..+..+.+.+.++.....+.....+++..+.+ ....+.+.|++ +..+
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ 593 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPK 593 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCce
Confidence 5899999999999999999987754332123444454443222 12356777765 6789
Q ss_pred EEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCC
Q psy3476 483 CIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRT 542 (1417)
Q Consensus 483 VLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~ 542 (1417)
|+|.++.+-+|+|.|.+.+++ .|-|.... .+.|.+||+-|.
T Consensus 594 ilIVvdmllTGFDaP~l~tLy---------ldKplk~h----------~LlQai~R~nR~ 634 (667)
T TIGR00348 594 LLIVVDMLLTGFDAPILNTLY---------LDKPLKYH----------GLLQAIARTNRI 634 (667)
T ss_pred EEEEEcccccccCCCccceEE---------Eecccccc----------HHHHHHHHhccc
Confidence 999999999999999988776 33443322 345999999994
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >KOG0953|consensus | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.4e-11 Score=141.45 Aligned_cols=119 Identities=18% Similarity=0.199 Sum_probs=91.2
Q ss_pred CCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCC--CCceEEEecchhhccCCcCC
Q psy3476 421 PRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPE--GLRKCIVSTNIAETSITIDG 498 (1417)
Q Consensus 421 ~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~--G~rkVLVATnIae~GIdIP~ 498 (1417)
.+-.+|+++| |-++++|-.+...+.+. .+..+..+||+||++.|.+--..|.+ +..+|+||||...+|+|+.
T Consensus 353 ~nlk~GDCvV-~FSkk~I~~~k~kIE~~----g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~- 426 (700)
T KOG0953|consen 353 SNLKPGDCVV-AFSKKDIFTVKKKIEKA----GNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLN- 426 (700)
T ss_pred ccCCCCCeEE-EeehhhHHHHHHHHHHh----cCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccccccccc-
Confidence 3345788876 44678899998888762 34558999999999998877777765 8899999999999999995
Q ss_pred eEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC----CCeEEEecCHH
Q psy3476 499 IRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG----PGVCYRLYSEE 554 (1417)
Q Consensus 499 V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g----~G~cy~L~t~~ 554 (1417)
|+-||-+-+ ...+.-.+.+++.+++.|-+|||||.| .|.+-.|+.++
T Consensus 427 IrRiiF~sl---------~Kysg~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eD 477 (700)
T KOG0953|consen 427 IRRIIFYSL---------IKYSGRETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSED 477 (700)
T ss_pred eeEEEEeec---------ccCCcccceeccHHHHHHHhhcccccccCCcCceEEEeeHhh
Confidence 666664222 122233456899999999999999998 48888887664
|
|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.3e-12 Score=125.77 Aligned_cols=115 Identities=30% Similarity=0.465 Sum_probs=96.6
Q ss_pred HHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchh
Q psy3476 411 RILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIA 490 (1417)
Q Consensus 411 ~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIa 490 (1417)
.+.+.+.+.. ..++++|||+++.+.++.+++.|.+ ....+..+||+++..+|..+++.|.+|..+++++|+.+
T Consensus 16 ~i~~~i~~~~--~~~~~~lvf~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~ 88 (131)
T cd00079 16 ALLELLKEHL--KKGGKVLIFCPSKKMLDELAELLRK-----PGIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVI 88 (131)
T ss_pred HHHHHHHhcc--cCCCcEEEEeCcHHHHHHHHHHHHh-----cCCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChh
Confidence 3444444432 2578999999999999999999986 56789999999999999999999999999999999999
Q ss_pred hccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEe
Q psy3476 491 ETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRL 550 (1417)
Q Consensus 491 e~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L 550 (1417)
++|+|+|++++||. ++++ .+..++.|++||+||.| .|.|+.+
T Consensus 89 ~~G~d~~~~~~vi~--------~~~~----------~~~~~~~Q~~GR~~R~~~~~~~~~~ 131 (131)
T cd00079 89 ARGIDLPNVSVVIN--------YDLP----------WSPSSYLQRIGRAGRAGQKGTAILL 131 (131)
T ss_pred hcCcChhhCCEEEE--------eCCC----------CCHHHheecccccccCCCCceEEeC
Confidence 99999999999987 5554 34555669999999999 7888753
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.1e-11 Score=128.72 Aligned_cols=64 Identities=17% Similarity=0.202 Sum_probs=51.2
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHH----c---CCCcEEEecchHHHHHHHHHHHHH
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ----A---GFQRIACTQPRRIACISLSKRVAY 102 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile----~---~~~~i~~tqPrr~aa~~~a~rva~ 102 (1417)
..+.+|.++++.+.+++++++++|||+|||..+..++++ . ...++++..|++..+.+.++.+..
T Consensus 21 ~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~ 91 (203)
T cd00268 21 KPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARK 91 (203)
T ss_pred CCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHH
Confidence 367899999999999999999999999999875555443 2 234688888999988888776544
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.6e-09 Score=126.55 Aligned_cols=124 Identities=23% Similarity=0.251 Sum_probs=102.2
Q ss_pred HHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecc
Q psy3476 409 YIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488 (1417)
Q Consensus 409 ~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATn 488 (1417)
...++..|.+.. ..+..+||-+-|++-++.+.+.|.+ .++++..+||++..-+|.+++...+.|...|||.-|
T Consensus 432 vdDL~~EI~~r~--~~~eRvLVTtLTKkmAEdLT~Yl~e-----~gikv~YlHSdidTlER~eIirdLR~G~~DvLVGIN 504 (663)
T COG0556 432 VDDLLSEIRKRV--AKNERVLVTTLTKKMAEDLTEYLKE-----LGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGIN 504 (663)
T ss_pred HHHHHHHHHHHH--hcCCeEEEEeehHHHHHHHHHHHHh-----cCceEEeeeccchHHHHHHHHHHHhcCCccEEEeeh
Confidence 344555555543 2357899999999999999999988 789999999999999999999999999999999999
Q ss_pred hhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCH
Q psy3476 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSE 553 (1417)
Q Consensus 489 Iae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~ 553 (1417)
.+-.|+|+|.|..|.- .|.... . +.-|-.|..|-+|||.|.-.|+++ ||..
T Consensus 505 LLREGLDiPEVsLVAI--------lDADKe--G---FLRse~SLIQtIGRAARN~~GkvI-lYAD 555 (663)
T COG0556 505 LLREGLDLPEVSLVAI--------LDADKE--G---FLRSERSLIQTIGRAARNVNGKVI-LYAD 555 (663)
T ss_pred hhhccCCCcceeEEEE--------eecCcc--c---cccccchHHHHHHHHhhccCCeEE-EEch
Confidence 9999999999999875 444321 1 224667778999999999999998 4443
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-09 Score=144.22 Aligned_cols=131 Identities=15% Similarity=0.166 Sum_probs=86.9
Q ss_pred HHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchh
Q psy3476 411 RILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIA 490 (1417)
Q Consensus 411 ~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIa 490 (1417)
.+...|.+.+. ..+|++|||+++.+..+.+++.|...... .++.+.. .+.. .+|.++++.|++|+..|+++|+.+
T Consensus 661 ~ia~~i~~l~~-~~~g~~LVlftS~~~l~~v~~~L~~~~~~-~~~~~l~--q~~~-~~r~~ll~~F~~~~~~iLlgt~sf 735 (850)
T TIGR01407 661 EIASYIIEITA-ITSPKILVLFTSYEMLHMVYDMLNELPEF-EGYEVLA--QGIN-GSRAKIKKRFNNGEKAILLGTSSF 735 (850)
T ss_pred HHHHHHHHHHH-hcCCCEEEEeCCHHHHHHHHHHHhhhccc-cCceEEe--cCCC-ccHHHHHHHHHhCCCeEEEEccee
Confidence 45555555443 34689999999999999999998652211 2333333 2322 468889999999999999999999
Q ss_pred hccCCcCCeE--EEEcCCcccceecccCCC--------------cccccee--ecCHhhHHhhcCcCCCCC--CCeEEEe
Q psy3476 491 ETSITIDGIR--FVVDSGKVKEMSYDVTAK--------------MSTLQEF--WISKASAEQRKGRAGRTG--PGVCYRL 550 (1417)
Q Consensus 491 e~GIdIP~V~--~VIdsG~~k~~~yD~~~~--------------~~~l~~~--~ISkasa~QR~GRAGR~g--~G~cy~L 550 (1417)
.+|||+|+.. .||-.|+. |.+|.. -..+... |-......|-+||.=|.. .|..+.+
T Consensus 736 ~EGVD~~g~~l~~viI~~LP----f~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~il 811 (850)
T TIGR01407 736 WEGVDFPGNGLVCLVIPRLP----FANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVIL 811 (850)
T ss_pred ecccccCCCceEEEEEeCCC----CCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEE
Confidence 9999999865 45555553 222221 1112111 223345789999999987 4776654
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=2e-10 Score=145.97 Aligned_cols=128 Identities=16% Similarity=0.140 Sum_probs=81.7
Q ss_pred CcEEEEccCC--CHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEE
Q psy3476 352 VKIILMSATI--NIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429 (1417)
Q Consensus 352 ~qvIlmSATl--n~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iL 429 (1417)
.++-+||.|. ..+.|.+.+ +..++.+|... |+.-...+... + .-....+..+++.+.+.+ ..+.+||
T Consensus 385 ~kLsGMTGTa~te~~Ef~~iY--~l~Vv~IPTnk-P~~R~D~~d~v--y----~t~~eK~~Ai~~ei~~~~--~~GrPVL 453 (913)
T PRK13103 385 NKLSGMTGTADTEAFEFRQIY--GLDVVVIPPNK-PLARKDFNDLV--Y----LTAEEKYAAIITDIKECM--ALGRPVL 453 (913)
T ss_pred chhccCCCCCHHHHHHHHHHh--CCCEEECCCCC-CcccccCCCeE--E----cCHHHHHHHHHHHHHHHH--hCCCCEE
Confidence 4788999999 355677776 56777777432 22211111100 0 000123455666666554 3467999
Q ss_pred EEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcC
Q psy3476 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITID 497 (1417)
Q Consensus 430 VFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP 497 (1417)
|-+.+.+..+.+++.|.+ .++..-.|++.-...|-..|-++-+.| .|.||||.|.||-||-
T Consensus 454 VGT~SVe~SE~ls~~L~~-----~gi~h~VLNAk~~~~EA~IIa~AG~~G--aVTIATNMAGRGTDIk 514 (913)
T PRK13103 454 VGTATIETSEHMSNLLKK-----EGIEHKVLNAKYHEKEAEIIAQAGRPG--ALTIATNMAGRGTDIL 514 (913)
T ss_pred EEeCCHHHHHHHHHHHHH-----cCCcHHHhccccchhHHHHHHcCCCCC--cEEEeccCCCCCCCEe
Confidence 999999999999999987 455555566664444544555444444 6999999999999983
|
|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.4e-10 Score=144.89 Aligned_cols=95 Identities=16% Similarity=0.048 Sum_probs=68.0
Q ss_pred EEEeCCHHHHHHHHHHHHhhhh-ccCCcEEEEecCCCCHHHHHHHhccC--------------------------CCCCc
Q psy3476 429 LIFMSGISEISSIVRAAQEYNE-KSQGWIVLPLHSTLSLEEQDRVFHYA--------------------------PEGLR 481 (1417)
Q Consensus 429 LVFl~~~~eie~la~~L~~~~~-~~~~~~V~~LHs~Ls~~eR~~v~~~f--------------------------~~G~r 481 (1417)
||=+++.+.+..+++.|..... ....+.+..+||..+...|..+++.. ..+..
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~ 839 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHL 839 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccccCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCC
Confidence 6667788888888888765432 23456788899999888888766432 12567
Q ss_pred eEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCC
Q psy3476 482 KCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544 (1417)
Q Consensus 482 kVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~ 544 (1417)
.|+|||++.|.|+|++--..+.+ +. +-.+..||+||..|.+.
T Consensus 840 ~i~v~Tqv~E~g~D~dfd~~~~~-----------~~----------~~~sliQ~aGR~~R~~~ 881 (1110)
T TIGR02562 840 FIVLATPVEEVGRDHDYDWAIAD-----------PS----------SMRSIIQLAGRVNRHRL 881 (1110)
T ss_pred eEEEEeeeEEEEecccCCeeeec-----------cC----------cHHHHHHHhhccccccc
Confidence 99999999999999973222222 33 44455599999999883
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.1e-11 Score=114.94 Aligned_cols=73 Identities=29% Similarity=0.413 Sum_probs=66.8
Q ss_pred CCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhH
Q psy3476 453 QGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASA 532 (1417)
Q Consensus 453 ~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa 532 (1417)
.++.+..+||+++.++|..+++.|.+|..+|||||+++++|||+|++++||. |+++. |..++
T Consensus 6 ~~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~--------~~~~~----------~~~~~ 67 (78)
T PF00271_consen 6 KGIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIF--------YDPPW----------SPEEY 67 (78)
T ss_dssp TTSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEE--------SSSES----------SHHHH
T ss_pred CCCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccc--------cccCC----------CHHHH
Confidence 6789999999999999999999999999999999999999999999999999 66654 55566
Q ss_pred HhhcCcCCCCC
Q psy3476 533 EQRKGRAGRTG 543 (1417)
Q Consensus 533 ~QR~GRAGR~g 543 (1417)
.|++||+||.|
T Consensus 68 ~Q~~GR~~R~g 78 (78)
T PF00271_consen 68 IQRIGRAGRIG 78 (78)
T ss_dssp HHHHTTSSTTT
T ss_pred HHHhhcCCCCC
Confidence 69999999986
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=5.1e-10 Score=141.00 Aligned_cols=166 Identities=17% Similarity=0.206 Sum_probs=104.0
Q ss_pred CcEEEEccCCC--HHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEE
Q psy3476 352 VKIILMSATIN--IELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429 (1417)
Q Consensus 352 ~qvIlmSATln--~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iL 429 (1417)
.++-+||.|.. .+.|.+.+ +..++.+|... |+.-...|...... ....+..+++.+.+.+ ..+.+||
T Consensus 362 ~kLsGMTGTA~te~~Ef~~iY--~l~Vv~IPTnk-P~~R~D~~d~iy~t------~~~K~~Aii~ei~~~~--~~gqPVL 430 (925)
T PRK12903 362 KKLSGMTGTAKTEEQEFIDIY--NMRVNVVPTNK-PVIRKDEPDSIFGT------KHAKWKAVVKEVKRVH--KKGQPIL 430 (925)
T ss_pred chhhccCCCCHHHHHHHHHHh--CCCEEECCCCC-CeeeeeCCCcEEEc------HHHHHHHHHHHHHHHH--hcCCCEE
Confidence 47889999983 44666666 56777777532 32222211111000 0122445666665554 3467999
Q ss_pred EEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeE--------E
Q psy3476 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIR--------F 501 (1417)
Q Consensus 430 VFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~--------~ 501 (1417)
|.+.+.+..+.+++.|.+ .++..-.|++.-...|-..|-++-+. -.|.||||.|.||-||---. +
T Consensus 431 VgT~SIe~SE~ls~~L~~-----~gi~h~vLNAk~~e~EA~IIa~AG~~--GaVTIATNMAGRGTDI~Lg~~V~~~GGLh 503 (925)
T PRK12903 431 IGTAQVEDSETLHELLLE-----ANIPHTVLNAKQNAREAEIIAKAGQK--GAITIATNMAGRGTDIKLSKEVLELGGLY 503 (925)
T ss_pred EEeCcHHHHHHHHHHHHH-----CCCCceeecccchhhHHHHHHhCCCC--CeEEEecccccCCcCccCchhHHHcCCcE
Confidence 999999999999999987 56666677776444444444333333 36999999999999996222 6
Q ss_pred EEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCH
Q psy3476 502 VVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSE 553 (1417)
Q Consensus 502 VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~ 553 (1417)
||-+.+. -|+--=.|-.|||||.| ||.+-.+.+-
T Consensus 504 VIgTerh------------------eSrRIDnQLrGRaGRQGDpGss~f~lSL 538 (925)
T PRK12903 504 VLGTDKA------------------ESRRIDNQLRGRSGRQGDVGESRFFISL 538 (925)
T ss_pred EEecccC------------------chHHHHHHHhcccccCCCCCcceEEEec
Confidence 6653321 12222339999999999 8987544443
|
|
| >KOG4150|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-10 Score=134.85 Aligned_cols=206 Identities=14% Similarity=0.098 Sum_probs=137.3
Q ss_pred CccEEEEecCcccc-cCcchHHHHHHHHhc------cCCCCcEEEEccCC--CHHHHHHHhc-cCceEEEeCCccccee-
Q psy3476 319 SYDVLVLDEIHERH-LHGDFLLGVIKCLLH------STAEVKIILMSATI--NIELFHTYFN-RIAKIIKVPGRLYPIQ- 387 (1417)
Q Consensus 319 ~~~~VIlDEaHER~-l~~d~ll~llk~l~~------~r~~~qvIlmSATl--n~~~~~~~f~-~~~~vi~v~gr~~pv~- 387 (1417)
...++++||+|-.. +.+......++.+.. ...+++++-.|||+ +.+...+.|+ +...+++++|.+..-+
T Consensus 412 ~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~ 491 (1034)
T KOG4150|consen 412 EELCKDTNSCALYLFPTKALAQDQLRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKL 491 (1034)
T ss_pred HHHHhcccceeeeecchhhHHHHHHHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccce
Confidence 34578899999222 122222233333332 24688999999999 4666677774 3567788888876544
Q ss_pred -EEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCC---cEEEEecCC
Q psy3476 388 -LEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQG---WIVLPLHST 463 (1417)
Q Consensus 388 -v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~---~~V~~LHs~ 463 (1417)
+.|.|........ .+ ..........+.+.. ..+-.+|.||+.++-|+.+....++....... -.+..+.||
T Consensus 492 ~V~WNP~~~P~~~~-~~--~~~i~E~s~~~~~~i--~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGG 566 (1034)
T KOG4150|consen 492 FVLWNPSAPPTSKS-EK--SSKVVEVSHLFAEMV--QHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGG 566 (1034)
T ss_pred EEEeCCCCCCcchh-hh--hhHHHHHHHHHHHHH--HcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCc
Confidence 3344433222111 11 011222222222222 22457999999999999887766553322211 135567899
Q ss_pred CCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC
Q psy3476 464 LSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG 543 (1417)
Q Consensus 464 Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g 543 (1417)
.+.++|++|+...-.|+.+-|+|||.+|-||||.+.+.|+.+|+ |.|-++++|..|||||..
T Consensus 567 Y~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~LDAVl~~GF------------------P~S~aNl~QQ~GRAGRRN 628 (1034)
T KOG4150|consen 567 YIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHLDAVLHLGF------------------PGSIANLWQQAGRAGRRN 628 (1034)
T ss_pred cchhhHHHHHHHhhCCeeeEEEecchhhhccccccceeEEEccC------------------chhHHHHHHHhccccccC
Confidence 99999999999988999999999999999999999999999776 567888899999999987
Q ss_pred -CCeE
Q psy3476 544 -PGVC 547 (1417)
Q Consensus 544 -~G~c 547 (1417)
+...
T Consensus 629 k~SLa 633 (1034)
T KOG4150|consen 629 KPSLA 633 (1034)
T ss_pred CCceE
Confidence 4443
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.7e-11 Score=149.81 Aligned_cols=124 Identities=23% Similarity=0.205 Sum_probs=103.6
Q ss_pred HHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecch
Q psy3476 410 IRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489 (1417)
Q Consensus 410 ~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnI 489 (1417)
..+++.+.+.. ..+.++||||++++.++.+++.|.. .++.+..+||++++.+|..+++.|++|...|+|||++
T Consensus 433 ~~L~~~L~~~~--~~g~~viIf~~t~~~ae~L~~~L~~-----~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~ 505 (652)
T PRK05298 433 DDLLSEIRKRV--AKGERVLVTTLTKRMAEDLTDYLKE-----LGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINL 505 (652)
T ss_pred HHHHHHHHHHH--hCCCEEEEEeCCHHHHHHHHHHHhh-----cceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCH
Confidence 34555555443 3467899999999999999999987 6788999999999999999999999999999999999
Q ss_pred hhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCH
Q psy3476 490 AETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSE 553 (1417)
Q Consensus 490 ae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~ 553 (1417)
+++|+|+|++++||. +|.+. ...|-+..+|.||+||+||...|.|+.+++.
T Consensus 506 L~rGfdlp~v~lVii--------~d~ei-----fG~~~~~~~yiqr~GR~gR~~~G~~i~~~~~ 556 (652)
T PRK05298 506 LREGLDIPEVSLVAI--------LDADK-----EGFLRSERSLIQTIGRAARNVNGKVILYADK 556 (652)
T ss_pred HhCCccccCCcEEEE--------eCCcc-----cccCCCHHHHHHHhccccCCCCCEEEEEecC
Confidence 999999999999998 55421 1123466778899999999889999988873
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.3e-08 Score=128.32 Aligned_cols=127 Identities=17% Similarity=0.189 Sum_probs=87.4
Q ss_pred CCCCcEEEEccCCC-----HHHHHHHhccCceEEEeCCcc---cceeEEeccccccccccccCCCCChHHHHHHHHHhhC
Q psy3476 349 TAEVKIILMSATIN-----IELFHTYFNRIAKIIKVPGRL---YPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKY 420 (1417)
Q Consensus 349 r~~~qvIlmSATln-----~~~~~~~f~~~~~vi~v~gr~---~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~ 420 (1417)
...-++|++|||.. ...|.+.++- .+.+.. -.+...|... ....++++.+.+.
T Consensus 274 ~k~g~LvvsSATg~~rg~R~~LfReLlgF-----evG~~~~~LRNIvD~y~~~-------------~~~e~~~elvk~l- 334 (1187)
T COG1110 274 RKLGILVVSSATGKPRGSRLKLFRELLGF-----EVGSGGEGLRNIVDIYVES-------------ESLEKVVELVKKL- 334 (1187)
T ss_pred cCCceEEEeeccCCCCCchHHHHHHHhCC-----ccCccchhhhheeeeeccC-------------ccHHHHHHHHHHh-
Confidence 35678999999993 3456666631 111110 0111111111 2244555555443
Q ss_pred CCCCCCcEEEEeCC---HHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEec----chhhcc
Q psy3476 421 PRTERGDVLIFMSG---ISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST----NIAETS 493 (1417)
Q Consensus 421 ~~~~~g~iLVFl~~---~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVAT----nIae~G 493 (1417)
+...|||++. ++.++++++.|+. .++++...|+. ..+.++.|..|+..|+|.. .++-+|
T Consensus 335 ----G~GgLIfV~~d~G~e~aeel~e~Lr~-----~Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRG 400 (1187)
T COG1110 335 ----GDGGLIFVPIDYGREKAEELAEYLRS-----HGINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRG 400 (1187)
T ss_pred ----CCCeEEEEEcHHhHHHHHHHHHHHHh-----cCceEEEeecc-----chhhhhhhccCceeEEEEecccccceeec
Confidence 3467999998 9999999999987 78999999984 3678999999999999975 589999
Q ss_pred CCcCC-eEEEEcCCcc
Q psy3476 494 ITIDG-IRFVVDSGKV 508 (1417)
Q Consensus 494 IdIP~-V~~VIdsG~~ 508 (1417)
||+|. ++|+|-.|-.
T Consensus 401 lDLP~rirYaIF~GvP 416 (1187)
T COG1110 401 LDLPHRIRYAVFYGVP 416 (1187)
T ss_pred CCchhheeEEEEecCC
Confidence 99995 6899985543
|
|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3.2e-09 Score=139.35 Aligned_cols=111 Identities=18% Similarity=0.164 Sum_probs=91.7
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCC---CCceEEEecchhhccCCcCCeE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPE---GLRKCIVSTNIAETSITIDGIR 500 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~---G~rkVLVATnIae~GIdIP~V~ 500 (1417)
.+.+||||+.-......+.+.|.. .++....+||+++.++|..+++.|.. +..-+|++|.++..|||+...+
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~-----~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad 560 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMY-----RGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATAD 560 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHH-----cCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCC
Confidence 456899999887777777777765 57889999999999999999999964 3356789999999999999999
Q ss_pred EEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHHHHH
Q psy3476 501 FVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEEQYS 557 (1417)
Q Consensus 501 ~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~~~~ 557 (1417)
+||. ||++-+.... .|+.||+-|.| +=.+|+|+++...+
T Consensus 561 ~VIi--------yD~dWNP~~d----------~QAidRaHRIGQkk~V~VyRLIt~gTIE 602 (1033)
T PLN03142 561 IVIL--------YDSDWNPQVD----------LQAQDRAHRIGQKKEVQVFRFCTEYTIE 602 (1033)
T ss_pred EEEE--------eCCCCChHHH----------HHHHHHhhhcCCCceEEEEEEEeCCcHH
Confidence 9998 8887654444 49999999999 34688999876554
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.7e-09 Score=132.53 Aligned_cols=128 Identities=16% Similarity=0.117 Sum_probs=81.9
Q ss_pred CcEEEEccCC--CHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEE
Q psy3476 352 VKIILMSATI--NIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429 (1417)
Q Consensus 352 ~qvIlmSATl--n~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iL 429 (1417)
.++.+||.|. ..+.|.+.+ +..++.+|... |+.-...|...... ....+..+++.+.+.+ ..+.+||
T Consensus 360 ~kL~GMTGTa~te~~Ef~~iY--~l~vv~IPtnk-p~~R~d~~d~v~~t------~~~K~~AI~~ei~~~~--~~grPVL 428 (870)
T CHL00122 360 PKLSGMTGTAKTEELEFEKIY--NLEVVCIPTHR-PMLRKDLPDLIYKD------ELSKWRAIADECLQMH--QTGRPIL 428 (870)
T ss_pred chhcccCCCCHHHHHHHHHHh--CCCEEECCCCC-CccceeCCCeEEeC------HHHHHHHHHHHHHHHH--hcCCCEE
Confidence 4788999999 344677766 56777777432 22211111111000 0112345566555554 3467999
Q ss_pred EEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCC--CHHHHHHHhccCCCCCceEEEecchhhccCCcC
Q psy3476 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTL--SLEEQDRVFHYAPEGLRKCIVSTNIAETSITID 497 (1417)
Q Consensus 430 VFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~L--s~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP 497 (1417)
|-+.+.+..+.+++.|.+ .++..-.|++.- ...|-..|-++-+.| .|.||||.|.||.||-
T Consensus 429 IgT~SIe~SE~ls~~L~~-----~gi~h~vLNAk~~~~~~EA~IIA~AG~~G--~VTIATNMAGRGTDI~ 491 (870)
T CHL00122 429 IGTTTIEKSELLSQLLKE-----YRLPHQLLNAKPENVRRESEIVAQAGRKG--SITIATNMAGRGTDII 491 (870)
T ss_pred EeeCCHHHHHHHHHHHHH-----cCCccceeeCCCccchhHHHHHHhcCCCC--cEEEeccccCCCcCee
Confidence 999999999999999987 567777777763 234444444444444 6999999999999983
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.4e-09 Score=114.68 Aligned_cols=68 Identities=25% Similarity=0.300 Sum_probs=56.6
Q ss_pred CCcHHHHHHHHHHHhcC-CeEEEEcCCCcchhHHHHHHHHHcCC----CcEEEecchHHHHHHHHHHHHHHHc
Q psy3476 38 LPVAQYKQEIIDTVLKE-RVVIIAGDTGCGKSTQIPQYLVQAGF----QRIACTQPRRIACISLSKRVAYETL 105 (1417)
Q Consensus 38 lp~~~~q~~il~~i~~~-~~~iI~a~TGsGKTt~ipq~ile~~~----~~i~~tqPrr~aa~~~a~rva~e~~ 105 (1417)
-+...+|.++++.+... ++++|.|+||||||+.+..++++... .+++++.|++..+.+..+++.....
T Consensus 7 ~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~ 79 (201)
T smart00487 7 EPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGP 79 (201)
T ss_pred CCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhc
Confidence 45578999999999988 99999999999999988877776543 4699999998888888887766553
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-09 Score=109.09 Aligned_cols=84 Identities=26% Similarity=0.220 Sum_probs=60.1
Q ss_pred CeEEEEcCCCcchhHHHHHHHHHcC----CCcEEEecchHHHHHHHHHHHHHHHccccCCeEEEEEeecccc------cC
Q psy3476 55 RVVIIAGDTGCGKSTQIPQYLVQAG----FQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHR------RE 124 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ipq~ile~~----~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy~ir~e~~~------~~ 124 (1417)
++++|.|+||||||+++..++.+.. ..+++++.|++.++.+..+++...... +..+.+........ ..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLLSG 78 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHhcC
Confidence 4679999999999999888877653 368999999999999998887776543 44455544433332 34
Q ss_pred CccEEEEccchhHHhh
Q psy3476 125 KTKIVFITEGLLLRQD 140 (1417)
Q Consensus 125 ~t~I~~~T~g~llr~l 140 (1417)
...|+++|.+.+.+.+
T Consensus 79 ~~~i~i~t~~~~~~~~ 94 (144)
T cd00046 79 KTDIVVGTPGRLLDEL 94 (144)
T ss_pred CCCEEEECcHHHHHHH
Confidence 5677777776665543
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO) | Back alignment and domain information |
|---|
Probab=99.02 E-value=2.9e-11 Score=120.95 Aligned_cols=82 Identities=29% Similarity=0.471 Sum_probs=61.7
Q ss_pred chHHHHHHHHHhCCCCcccccCcCCcccccccccccccCCCeEEeCCCCcCCC-CCcccccccCCCCCCCCCCCCCCCCc
Q psy3476 1192 KDVTILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTS-QPDVLRISEDDIVDPPPGLKLPGRNV 1270 (1417)
Q Consensus 1192 ~~~~l~~~iL~~glyP~~a~~d~~n~~~~~~~~~~~t~~k~~v~lhP~s~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~ 1270 (1417)
.++.+++.+||+|+|||+|..|..+ ...++..+..|.+||+|++.+ .|++
T Consensus 32 ~~~~~i~~~l~aG~~~nvA~~~~~~-------~y~~~~~~~~v~iHPsS~l~~~~p~~---------------------- 82 (114)
T PF07717_consen 32 DQWELIRAALCAGFYPNVARRDNKG-------SYKTLSNGQPVFIHPSSVLFKKPPKW---------------------- 82 (114)
T ss_dssp THCHHHHHHHHHHHCCCEEEE-TTS-------SEEETTTG-EEEE-TTSTTTTTT-SE----------------------
T ss_pred ccHHHHHHHHHHhhhhheEEeCCCC-------CEEEecCCCEEEEecCcccccccccc----------------------
Confidence 7889999999999999999877444 344556666899999998644 4433
Q ss_pred cccchhHHHHHHHHhccchhhhcccccchHHHHhhcccee
Q psy3476 1271 ISSKHQLLVYMSLLETSKPFLVNCLRMPALQTLLLFSSAI 1310 (1417)
Q Consensus 1271 ~s~~hq~~~~~~~leT~k~yl~~~~~~~~~~~lll~~~~i 1310 (1417)
++|.++++|+|+||++|+.|++.. |++|++.+
T Consensus 83 -------vvy~e~~~t~k~y~~~~t~I~~~w-l~~~~~~~ 114 (114)
T PF07717_consen 83 -------VVYHELVRTSKPYMRDVTAISPEW-LLLFAPHY 114 (114)
T ss_dssp -------EEEEEEEESSSEEEEEEEE--HHH-HHHH-TTT
T ss_pred -------chhhhheecCCcEEEECcCCCHHH-HHHHcccC
Confidence 389999999999999999999999 88888753
|
In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B. |
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.9e-08 Score=127.57 Aligned_cols=128 Identities=16% Similarity=0.145 Sum_probs=80.9
Q ss_pred CcEEEEccCC--CHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEE
Q psy3476 352 VKIILMSATI--NIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429 (1417)
Q Consensus 352 ~qvIlmSATl--n~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iL 429 (1417)
.++-+||.|. ..+.|.+.+ +..++.+|... |+.-...|...... ....+..+++.+.+.+ ..+.+||
T Consensus 375 ~kLsGMTGTa~te~~Ef~~iY--~l~Vv~IPTnk-P~~R~d~~d~vy~t------~~~K~~Ai~~ei~~~~--~~GrPVL 443 (939)
T PRK12902 375 PKLAGMTGTAKTEEVEFEKTY--KLEVTVIPTNR-PRRRQDWPDQVYKT------EIAKWRAVANETAEMH--KQGRPVL 443 (939)
T ss_pred chhcccCCCCHHHHHHHHHHh--CCcEEEcCCCC-CeeeecCCCeEEcC------HHHHHHHHHHHHHHHH--hCCCCEE
Confidence 4788999998 345677776 56777777532 32221111111000 0112445666665554 3477999
Q ss_pred EEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCC-CC-HHHHHHHhccCCCCCceEEEecchhhccCCcC
Q psy3476 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHST-LS-LEEQDRVFHYAPEGLRKCIVSTNIAETSITID 497 (1417)
Q Consensus 430 VFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~-Ls-~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP 497 (1417)
|-+.+.+..+.+++.|.+ .++..-.|++. .. ..|-..|-++-+.| .|.||||.|.||-||-
T Consensus 444 IgT~SVe~SE~ls~~L~~-----~gi~h~vLNAk~~~~~~EA~IIa~AG~~G--aVTIATNMAGRGTDIk 506 (939)
T PRK12902 444 VGTTSVEKSELLSALLQE-----QGIPHNLLNAKPENVEREAEIVAQAGRKG--AVTIATNMAGRGTDII 506 (939)
T ss_pred EeeCCHHHHHHHHHHHHH-----cCCchheeeCCCcchHhHHHHHHhcCCCC--cEEEeccCCCCCcCEe
Confidence 999999999999999987 55666667775 22 33333444444443 6999999999998873
|
|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.3e-10 Score=102.87 Aligned_cols=80 Identities=38% Similarity=0.530 Sum_probs=69.4
Q ss_pred HHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCcc
Q psy3476 441 IVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMS 520 (1417)
Q Consensus 441 la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~ 520 (1417)
+++.|.. .++.+..+||+++.++|..+++.|.+|..+|+++|+++++|+|+|+++.||. +++
T Consensus 3 l~~~l~~-----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~--------~~~----- 64 (82)
T smart00490 3 LAELLKE-----LGIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVII--------YDL----- 64 (82)
T ss_pred HHHHHHH-----CCCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEE--------eCC-----
Confidence 4455554 4688999999999999999999999999999999999999999999999998 554
Q ss_pred ccceeecCHhhHHhhcCcCCCCC
Q psy3476 521 TLQEFWISKASAEQRKGRAGRTG 543 (1417)
Q Consensus 521 ~l~~~~ISkasa~QR~GRAGR~g 543 (1417)
+.+..++.|++||+||.|
T Consensus 65 -----~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 65 -----PWSPASYIQRIGRAGRAG 82 (82)
T ss_pred -----CCCHHHHHHhhcccccCC
Confidence 346677779999999975
|
|
| >KOG0951|consensus | Back alignment and domain information |
|---|
Probab=98.91 E-value=1e-08 Score=130.38 Aligned_cols=234 Identities=14% Similarity=0.152 Sum_probs=147.5
Q ss_pred cccchhhhhhccccccccccccCCCCccEEEEecCcccc-cCcch---HHHHHHHHhccCCCCcEEEEccCC-CHHHHHH
Q psy3476 294 GDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERH-LHGDF---LLGVIKCLLHSTAEVKIILMSATI-NIELFHT 368 (1417)
Q Consensus 294 ~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~-l~~d~---ll~llk~l~~~r~~~qvIlmSATl-n~~~~~~ 368 (1417)
+++++.||++|... ...+++++.|.||.|.-+ ..+.. .-.+..+....-+.+|++.+|..+ |+.++ -
T Consensus 1235 ~~vii~tpe~~d~l-------q~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ir~v~ls~~lana~d~-i 1306 (1674)
T KOG0951|consen 1235 GQVIISTPEQWDLL-------QSIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKKIRVVALSSSLANARDL-I 1306 (1674)
T ss_pred cceEEechhHHHHH-------hhhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhheeEEEeehhhccchhh-c
Confidence 45667777777644 156788999999999322 11111 112233334445788999999888 77777 2
Q ss_pred HhccCceE--EEeCCcccceeEEecccccccccc-ccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHH
Q psy3476 369 YFNRIAKI--IKVPGRLYPIQLEYHPIVELDRTK-SEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAA 445 (1417)
Q Consensus 369 ~f~~~~~v--i~v~gr~~pv~v~~~~~~~~~~~~-~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L 445 (1417)
++ ....+ +....|+.|.+++........+.. ...+....+ ..+.+.. ..+.+.+||+|+++.+..++..+
T Consensus 1307 g~-s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~----~ai~~~a--~~~k~~~vf~p~rk~~~~~a~~~ 1379 (1674)
T KOG0951|consen 1307 GA-SSSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTY----TAIVRHA--GNRKPAIVFLPTRKHARLVAVDL 1379 (1674)
T ss_pred cc-cccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHH----HHHHHHh--cCCCCeEEEeccchhhhhhhhcc
Confidence 22 22333 344567888887765433322211 001111122 2233322 35778999999999999888766
Q ss_pred Hhhhh-------------------ccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCC
Q psy3476 446 QEYNE-------------------KSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSG 506 (1417)
Q Consensus 446 ~~~~~-------------------~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG 506 (1417)
..++. .+-...|. |-+|+..++..+-..|..|.+.|.|...- ..|+-...--+||.
T Consensus 1380 ~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg--~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~~lVvvm-- 1454 (1674)
T KOG0951|consen 1380 VTFSHADEPDYLLSELEECDETLRESLKHGVG--HEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKAHLVVVM-- 1454 (1674)
T ss_pred chhhccCcHHHHHHHHhcchHhhhhccccccc--ccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccceEEEEe--
Confidence 43220 11122233 99999999999999999999999887765 88887765555553
Q ss_pred cccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHH
Q psy3476 507 KVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQ 555 (1417)
Q Consensus 507 ~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~ 555 (1417)
.+..||.... .|. ..+.++..|+.|+|.| .|.|+.+.....
T Consensus 1455 --gt~~ydg~e~--~~~--~y~i~~ll~m~G~a~~--~~k~vi~~~~~~ 1495 (1674)
T KOG0951|consen 1455 --GTQYYDGKEH--SYE--DYPIAELLQMVGLASG--AGKCVIMCHTPK 1495 (1674)
T ss_pred --cceeeccccc--ccc--cCchhHHHHHhhhhcC--CccEEEEecCch
Confidence 4566887643 343 3466899999999998 577777764433
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.9e-07 Score=117.90 Aligned_cols=154 Identities=8% Similarity=0.103 Sum_probs=95.0
Q ss_pred HHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecC-CCCHHHHHHHhccCCCCCceEEEecch
Q psy3476 411 RILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHS-TLSLEEQDRVFHYAPEGLRKCIVSTNI 489 (1417)
Q Consensus 411 ~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs-~Ls~~eR~~v~~~f~~G~rkVLVATnI 489 (1417)
.+.+.|.... ..+|++||+.++.+..+.+++.|... .+.+ ...| +.+ +.++.+.|+++...||++|..
T Consensus 635 ~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~-----~~~~-l~Qg~~~~---~~~l~~~F~~~~~~vLlG~~s 703 (820)
T PRK07246 635 EIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQW-----QVSH-LAQEKNGT---AYNIKKRFDRGEQQILLGLGS 703 (820)
T ss_pred HHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhc-----CCcE-EEeCCCcc---HHHHHHHHHcCCCeEEEecch
Confidence 4555554444 34789999999999999999998652 2333 2223 222 456788898888899999999
Q ss_pred hhccCCcCC--eEEEEcCCcccceecccCCC--------------ccccceeecC--HhhHHhhcCcCCCCC--CCeEEE
Q psy3476 490 AETSITIDG--IRFVVDSGKVKEMSYDVTAK--------------MSTLQEFWIS--KASAEQRKGRAGRTG--PGVCYR 549 (1417)
Q Consensus 490 ae~GIdIP~--V~~VIdsG~~k~~~yD~~~~--------------~~~l~~~~IS--kasa~QR~GRAGR~g--~G~cy~ 549 (1417)
+-.|||+|+ ...||-.++. |.+|.. -+.+...-+. .-.+.|=+||.=|.. .|.++.
T Consensus 704 FwEGVD~p~~~~~~viI~kLP----F~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~i 779 (820)
T PRK07246 704 FWEGVDFVQADRMIEVITRLP----FDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVLI 779 (820)
T ss_pred hhCCCCCCCCCeEEEEEecCC----CCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEEE
Confidence 999999973 4444444543 222211 1223222233 345789999999987 588765
Q ss_pred ecCH---HHH-HHhhccCCC--cccccChHHHHHHH
Q psy3476 550 LYSE---EQY-SLLAEYSTP--EIRRVSIDSLLLSL 579 (1417)
Q Consensus 550 L~t~---~~~-~~l~~~~~p--EI~r~~L~~~lL~l 579 (1417)
+=.+ ..| ..+....++ .+...++.++.-.+
T Consensus 780 lD~R~~~k~Yg~~~l~sLP~~~~~~~~~~~~~~~~~ 815 (820)
T PRK07246 780 LDRRILTKSYGKQILASLAEEFLISQQNFSDVLVEI 815 (820)
T ss_pred ECCcccccHHHHHHHHhCCCCCccccCCHHHHHHHH
Confidence 4322 223 334333333 24456666664444
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.3e-08 Score=101.45 Aligned_cols=82 Identities=13% Similarity=0.163 Sum_probs=51.5
Q ss_pred hcCCeEEEEcCCCcchhHH-HHHHHHHcC--CCcEEEecchHHHHHHHHHHHHHHHccccCCeEEEEEeecc-cccCCcc
Q psy3476 52 LKERVVIIAGDTGCGKSTQ-IPQYLVQAG--FQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK-HRREKTK 127 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~-ipq~ile~~--~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy~ir~e~-~~~~~t~ 127 (1417)
.+++..+|-..+|+|||+. +|+.+.+.- ..|+++..|+|+.+..+++.+. |..+.|+...-. ......-
T Consensus 2 ~kg~~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~-------~~~~~~~t~~~~~~~~g~~~ 74 (148)
T PF07652_consen 2 RKGELTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALK-------GLPVRFHTNARMRTHFGSSI 74 (148)
T ss_dssp STTEEEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTT-------TSSEEEESTTSS----SSSS
T ss_pred CCCceeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHh-------cCCcccCceeeeccccCCCc
Confidence 4678899999999999996 666666543 3589999999998777766552 234555543321 2234556
Q ss_pred EEEEccchhHHhh
Q psy3476 128 IVFITEGLLLRQD 140 (1417)
Q Consensus 128 I~~~T~g~llr~l 140 (1417)
|.++|.+.+.+.+
T Consensus 75 i~vMc~at~~~~~ 87 (148)
T PF07652_consen 75 IDVMCHATYGHFL 87 (148)
T ss_dssp EEEEEHHHHHHHH
T ss_pred ccccccHHHHHHh
Confidence 7777777666544
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.1e-08 Score=105.98 Aligned_cols=62 Identities=19% Similarity=0.311 Sum_probs=47.7
Q ss_pred CCcHHHHHHHHHHHhc-------CCeEEEEcCCCcchhHHHHHHHHHcCCCcEEEecchHHHHHHHHHHH
Q psy3476 38 LPVAQYKQEIIDTVLK-------ERVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRV 100 (1417)
Q Consensus 38 lp~~~~q~~il~~i~~-------~~~~iI~a~TGsGKTt~ipq~ile~~~~~i~~tqPrr~aa~~~a~rv 100 (1417)
..++.+|+++++.+.. ++.+++.+|||||||..+..++.+... +++++.|+...+.|....+
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~-~~l~~~p~~~l~~Q~~~~~ 70 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR-KVLIVAPNISLLEQWYDEF 70 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC-EEEEEESSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc-ceeEecCHHHHHHHHHHHH
Confidence 3467899999888873 689999999999999887776666555 8888889977666666555
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >KOG1123|consensus | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.3e-07 Score=109.00 Aligned_cols=117 Identities=15% Similarity=0.182 Sum_probs=83.7
Q ss_pred HHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCC-CceEEEecchh
Q psy3476 412 ILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEG-LRKCIVSTNIA 490 (1417)
Q Consensus 412 il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G-~rkVLVATnIa 490 (1417)
.++.+.+.+. ..+.+||||.-+.=.....|-.|.+ -.+||..++.||.+|++.|+-+ ++.-|+-+-++
T Consensus 531 aCqfLI~~HE-~RgDKiIVFsDnvfALk~YAikl~K----------pfIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSKVg 599 (776)
T KOG1123|consen 531 ACQFLIKFHE-RRGDKIIVFSDNVFALKEYAIKLGK----------PFIYGPTSQNERMKILQNFQTNPKVNTIFLSKVG 599 (776)
T ss_pred HHHHHHHHHH-hcCCeEEEEeccHHHHHHHHHHcCC----------ceEECCCchhHHHHHHHhcccCCccceEEEeecc
Confidence 3444444443 3467899998876655555444432 3479999999999999999865 57888999999
Q ss_pred hccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC----C---CeEEEecCHHHH
Q psy3476 491 ETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG----P---GVCYRLYSEEQY 556 (1417)
Q Consensus 491 e~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g----~---G~cy~L~t~~~~ 556 (1417)
.+|||+|..++.|+ ..... =|+-+-.||.||.-|.. + ...|.|++++..
T Consensus 600 DtSiDLPEAnvLIQ--------ISSH~---------GSRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DTq 655 (776)
T KOG1123|consen 600 DTSIDLPEANVLIQ--------ISSHG---------GSRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDTQ 655 (776)
T ss_pred CccccCCcccEEEE--------Ecccc---------cchHHHHHHHHHHHHHhhcCccccceeeeeeeecchH
Confidence 99999999999998 22221 25666779999888865 2 346777766544
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.2e-05 Score=107.35 Aligned_cols=133 Identities=17% Similarity=0.186 Sum_probs=87.1
Q ss_pred HHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecch
Q psy3476 410 IRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489 (1417)
Q Consensus 410 ~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnI 489 (1417)
..+.+.|.+... ..+|.+|||.++.+..+.+++.|...... .++.+.. . ++....|.++.+.|+.+...|+++|..
T Consensus 738 ~~la~~i~~l~~-~~~g~~LVLFtSy~~l~~v~~~l~~~~~~-~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~~iLlG~~s 813 (928)
T PRK08074 738 EEVAAYIAKIAK-ATKGRMLVLFTSYEMLKKTYYNLKNEEEL-EGYVLLA-Q-GVSSGSRARLTKQFQQFDKAILLGTSS 813 (928)
T ss_pred HHHHHHHHHHHH-hCCCCEEEEECCHHHHHHHHHHHhhcccc-cCceEEe-c-CCCCCCHHHHHHHHHhcCCeEEEecCc
Confidence 345555555443 34689999999999999999999753211 1222222 2 333345778888898888899999999
Q ss_pred hhccCCcCCe--EEEEcCCcccceecccCCC--------------cccccee--ecCHhhHHhhcCcCCCCC--CCeEEE
Q psy3476 490 AETSITIDGI--RFVVDSGKVKEMSYDVTAK--------------MSTLQEF--WISKASAEQRKGRAGRTG--PGVCYR 549 (1417)
Q Consensus 490 ae~GIdIP~V--~~VIdsG~~k~~~yD~~~~--------------~~~l~~~--~ISkasa~QR~GRAGR~g--~G~cy~ 549 (1417)
+..|||+|+- +.||-.++. |.+|.. -+.+... |.......|-+||.=|.. .|.++.
T Consensus 814 FwEGVD~pg~~l~~viI~kLP----F~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~~D~G~v~i 889 (928)
T PRK08074 814 FWEGIDIPGDELSCLVIVRLP----FAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTETDRGTVFV 889 (928)
T ss_pred ccCccccCCCceEEEEEecCC----CCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccCCceEEEEE
Confidence 9999999974 677665553 332321 1112211 223445689999999988 487764
Q ss_pred e
Q psy3476 550 L 550 (1417)
Q Consensus 550 L 550 (1417)
+
T Consensus 890 l 890 (928)
T PRK08074 890 L 890 (928)
T ss_pred e
Confidence 4
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.2e-06 Score=109.50 Aligned_cols=67 Identities=6% Similarity=-0.027 Sum_probs=45.6
Q ss_pred ccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHH----HHHHhccCCCCcEEEEccCCCHHHHHHHh
Q psy3476 295 DFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGV----IKCLLHSTAEVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 295 d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~l----lk~l~~~r~~~qvIlmSATln~~~~~~~f 370 (1417)
.+++||...++ ..+.++++|||||-|+-++..+-...+ +........+..+|+.|||...+.+...-
T Consensus 242 ~IViGtRSAvF---------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPSles~~~~~ 312 (665)
T PRK14873 242 RVVVGTRSAVF---------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHARTAEAQALVE 312 (665)
T ss_pred cEEEEcceeEE---------eccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHh
Confidence 46778888887 778999999999999554443311110 11122234688999999999988776544
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.3e-05 Score=101.55 Aligned_cols=108 Identities=22% Similarity=0.155 Sum_probs=72.4
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVV 503 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VI 503 (1417)
.+.+|-||++|....+.+++.... ....|+.++|.-+.. .+.. =++.+|++=|++...|+++....+=-
T Consensus 281 ~gknIcvfsSt~~~~~~v~~~~~~-----~~~~Vl~l~s~~~~~---dv~~---W~~~~VviYT~~itvG~Sf~~~HF~~ 349 (824)
T PF02399_consen 281 AGKNICVFSSTVSFAEIVARFCAR-----FTKKVLVLNSTDKLE---DVES---WKKYDVVIYTPVITVGLSFEEKHFDS 349 (824)
T ss_pred CCCcEEEEeChHHHHHHHHHHHHh-----cCCeEEEEcCCCCcc---cccc---ccceeEEEEeceEEEEeccchhhceE
Confidence 467888999999999988888876 345788888876655 2221 34589999999999999997654322
Q ss_pred cCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHH
Q psy3476 504 DSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEE 554 (1417)
Q Consensus 504 dsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~ 554 (1417)
..+++|...+. .+..+..|+.||+=.......|..+...
T Consensus 350 ~f~yvk~~~~g------------pd~~s~~Q~lgRvR~l~~~ei~v~~d~~ 388 (824)
T PF02399_consen 350 MFAYVKPMSYG------------PDMVSVYQMLGRVRSLLDNEIYVYIDAS 388 (824)
T ss_pred EEEEecCCCCC------------CcHHHHHHHHHHHHhhccCeEEEEEecc
Confidence 22222222121 1234567999999777766666665544
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.2e-05 Score=102.45 Aligned_cols=197 Identities=20% Similarity=0.270 Sum_probs=111.9
Q ss_pred CCCCccEEEEecCcccccCc-chHHHHHHHHhcc---------------------CCCCcEEEEccCCC--HHHHHHHhc
Q psy3476 316 FLSSYDVLVLDEIHERHLHG-DFLLGVIKCLLHS---------------------TAEVKIILMSATIN--IELFHTYFN 371 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~-d~ll~llk~l~~~---------------------r~~~qvIlmSATln--~~~~~~~f~ 371 (1417)
...+-.++|+||.-.|.+.+ .+-.++...+... +--.++.+|+.|.. ...|..++
T Consensus 307 IVrd~ev~IvD~ftGR~m~gRr~s~GLhQAiEAKEgv~i~~e~~tlatITfQn~fR~y~kl~gmTGTa~te~~EF~~iY- 385 (822)
T COG0653 307 IVRDGEVVIVDEFTGRMMEGRRWSDGLHQAIEAKEGVEIQEENQTLATITFQNLFRLYPKLAGMTGTADTEEEEFDVIY- 385 (822)
T ss_pred EEecCeEEEEecccCCcccCcCCCchhHHHHHHhcCCcccccceeehhhhHHHHHhhhhhhcCCCCcchhhhhhhhhcc-
Confidence 34577899999998766554 2222222222111 11245667777773 44666666
Q ss_pred cCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhc
Q psy3476 372 RIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEK 451 (1417)
Q Consensus 372 ~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~ 451 (1417)
+..++.+|... |+.- .+.+...+ .-....+..++..|...+ ..+.+|||-..+.+..+.+.+.|.+
T Consensus 386 -~l~vv~iPTnr-p~~R--~D~~D~vy----~t~~~K~~Aiv~~I~~~~--~~gqPvLvgT~sie~SE~ls~~L~~---- 451 (822)
T COG0653 386 -GLDVVVIPTNR-PIIR--LDEPDLVY----KTEEEKFKAIVEDIKERH--EKGQPVLVGTVSIEKSELLSKLLRK---- 451 (822)
T ss_pred -CCceeeccCCC-cccC--CCCccccc----cchHHHHHHHHHHHHHHH--hcCCCEEEcCcceecchhHHHHHHh----
Confidence 34444444321 1110 00000000 011123455666666655 4478999999999999999999987
Q ss_pred cCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeE-----------EEEcCCcccceecccCCCcc
Q psy3476 452 SQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIR-----------FVVDSGKVKEMSYDVTAKMS 520 (1417)
Q Consensus 452 ~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~-----------~VIdsG~~k~~~yD~~~~~~ 520 (1417)
.++....|.+.-...|-..+-++-..| -|-||||.|.+|-||---. +||-+.+.-
T Consensus 452 -~~i~h~VLNAk~h~~EA~Iia~AG~~g--aVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhE----------- 517 (822)
T COG0653 452 -AGIPHNVLNAKNHAREAEIIAQAGQPG--AVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHE----------- 517 (822)
T ss_pred -cCCCceeeccccHHHHHHHHhhcCCCC--ccccccccccCCcccccCCCHHHHHHhCCcEEEecccch-----------
Confidence 445445555554445544454444443 4789999999999984211 334322211
Q ss_pred ccceeecCHhhHHhhcCcCCCCC-CCeEE
Q psy3476 521 TLQEFWISKASAEQRKGRAGRTG-PGVCY 548 (1417)
Q Consensus 521 ~l~~~~ISkasa~QR~GRAGR~g-~G~cy 548 (1417)
|+-=-.|-.||+||.| ||..-
T Consensus 518 -------SRRIDnQLRGRsGRQGDpG~S~ 539 (822)
T COG0653 518 -------SRRIDNQLRGRAGRQGDPGSSR 539 (822)
T ss_pred -------hhHHHHHhhcccccCCCcchhh
Confidence 1222238899999999 88764
|
|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.24 E-value=5e-06 Score=107.16 Aligned_cols=200 Identities=20% Similarity=0.212 Sum_probs=122.7
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhc----------------------cCCCCcEEEEccCC--CHHHHHHHhcc
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLH----------------------STAEVKIILMSATI--NIELFHTYFNR 372 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~----------------------~r~~~qvIlmSATl--n~~~~~~~f~~ 372 (1417)
..+=.++||||.-.|...+--+..=+..... .+--.++-+||.|. ....|.+.+
T Consensus 507 V~dgkV~IVDe~TGRim~gRr~sdGLHQAIEAKE~V~I~~e~qT~AtIT~QnyFR~Y~kLsGMTGTA~tea~Ef~~IY-- 584 (1112)
T PRK12901 507 VMDGKVKIVDEQTGRIMEGRRYSDGLHQAIEAKENVKIEAATQTFATITLQNYFRMYHKLAGMTGTAETEAGEFWDIY-- 584 (1112)
T ss_pred EECCEEEEEeCCCCccCCCCccchHHHHHHHHHcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCCHHHHHHHHHHh--
Confidence 3455789999987666554222111111111 01224788999999 355677777
Q ss_pred CceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhcc
Q psy3476 373 IAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKS 452 (1417)
Q Consensus 373 ~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~ 452 (1417)
+..++.+|... |+.-.-.+... + ......+..+++.+.+.+ ..+.+|||-+.+.+..+.+++.|..
T Consensus 585 ~L~Vv~IPTnr-P~~R~D~~D~v--y----~t~~eK~~Aii~ei~~~~--~~GrPVLVGT~SVe~SE~lS~~L~~----- 650 (1112)
T PRK12901 585 KLDVVVIPTNR-PIARKDKEDLV--Y----KTKREKYNAVIEEITELS--EAGRPVLVGTTSVEISELLSRMLKM----- 650 (1112)
T ss_pred CCCEEECCCCC-CcceecCCCeE--e----cCHHHHHHHHHHHHHHHH--HCCCCEEEEeCcHHHHHHHHHHHHH-----
Confidence 56677777431 22111111100 0 001123456666666655 3477999999999999999999987
Q ss_pred CCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcC--------CeEEEEcCCcccceecccCCCccccce
Q psy3476 453 QGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITID--------GIRFVVDSGKVKEMSYDVTAKMSTLQE 524 (1417)
Q Consensus 453 ~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP--------~V~~VIdsG~~k~~~yD~~~~~~~l~~ 524 (1417)
.++..-.|++.....|-..|-++-..| .|-||||.|.||-||- +=-+||-+.+
T Consensus 651 ~gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTer----------------- 711 (1112)
T PRK12901 651 RKIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTER----------------- 711 (1112)
T ss_pred cCCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcCCCcCcccchhhHHcCCCEEEEccC-----------------
Confidence 455555666665555555555555555 5899999999999986 2235554322
Q ss_pred eecCHhhHHhhcCcCCCCC-CCeEEEecC
Q psy3476 525 FWISKASAEQRKGRAGRTG-PGVCYRLYS 552 (1417)
Q Consensus 525 ~~ISkasa~QR~GRAGR~g-~G~cy~L~t 552 (1417)
+-|+---.|-.|||||.| ||.+-.+.+
T Consensus 712 -heSrRID~QLrGRaGRQGDPGsS~f~lS 739 (1112)
T PRK12901 712 -HESRRVDRQLRGRAGRQGDPGSSQFYVS 739 (1112)
T ss_pred -CCcHHHHHHHhcccccCCCCCcceEEEE
Confidence 234444459999999999 898754544
|
|
| >KOG0385|consensus | Back alignment and domain information |
|---|
Probab=98.18 E-value=6.9e-05 Score=92.93 Aligned_cols=115 Identities=23% Similarity=0.286 Sum_probs=86.9
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCC---CceEEEecchhhccCCcCCe
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEG---LRKCIVSTNIAETSITIDGI 499 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G---~rkVLVATnIae~GIdIP~V 499 (1417)
..+..||||-- ...+-+.|..+.. -.++...-+.|.++.++|...++.|..- +.-.+++|-...-|||+-+.
T Consensus 485 ~~GhRVLIFSQ----mt~mLDILeDyc~-~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aA 559 (971)
T KOG0385|consen 485 EQGHRVLIFSQ----MTRMLDILEDYCM-LRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAA 559 (971)
T ss_pred hCCCeEEEeHH----HHHHHHHHHHHHH-hcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccccccccccccc
Confidence 34668999953 3334444444332 2678899999999999999999888643 45578999999999999999
Q ss_pred EEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHH
Q psy3476 500 RFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS 557 (1417)
Q Consensus 500 ~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~ 557 (1417)
+.||- ||..-+. -.--+|.+|+-|.|-..+=++|||+++...+
T Consensus 560 DtVIl--------yDSDWNP-------Q~DLQAmDRaHRIGQ~K~V~V~RLitentVE 602 (971)
T KOG0385|consen 560 DTVIL--------YDSDWNP-------QVDLQAMDRAHRIGQKKPVVVYRLITENTVE 602 (971)
T ss_pred cEEEE--------ecCCCCc-------hhhhHHHHHHHhhCCcCceEEEEEeccchHH
Confidence 99997 7765443 2344677888888888899999999987665
|
|
| >KOG0387|consensus | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00019 Score=89.64 Aligned_cols=115 Identities=18% Similarity=0.265 Sum_probs=89.9
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCc--eEEEecchhhccCCcCCeEE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLR--KCIVSTNIAETSITIDGIRF 501 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~r--kVLVATnIae~GIdIP~V~~ 501 (1417)
.+..+|+|-.++....-+-..|.. ..++..+.+.|..+...|..+.+.|.++.. -.|++|-+..-|+|+-+.+-
T Consensus 545 qg~rvllFsqs~~mLdilE~fL~~----~~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnR 620 (923)
T KOG0387|consen 545 QGDRVLLFSQSRQMLDILESFLRR----AKGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGANR 620 (923)
T ss_pred CCCEEEEehhHHHHHHHHHHHHHh----cCCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCce
Confidence 355899999999888877777763 368999999999999999999999997753 46889999999999999888
Q ss_pred EEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHH
Q psy3476 502 VVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS 557 (1417)
Q Consensus 502 VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~ 557 (1417)
||- |||.-+.+. -.++.-|+-|-|-...=.+|||.+....+
T Consensus 621 VII--------fDPdWNPSt-------D~QAreRawRiGQkkdV~VYRL~t~gTIE 661 (923)
T KOG0387|consen 621 VII--------FDPDWNPST-------DNQARERAWRIGQKKDVVVYRLMTAGTIE 661 (923)
T ss_pred EEE--------ECCCCCCcc-------chHHHHHHHhhcCccceEEEEEecCCcHH
Confidence 876 887655443 34555566665555566789999876554
|
|
| >KOG0384|consensus | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00025 Score=91.97 Aligned_cols=133 Identities=17% Similarity=0.156 Sum_probs=94.0
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCC---CCceEEEecchhhccCCcCCeE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPE---GLRKCIVSTNIAETSITIDGIR 500 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~---G~rkVLVATnIae~GIdIP~V~ 500 (1417)
.+..||||--=+.-.+-++++|.. .++..--|.|++..+-|+..++.|.. ...-.|+||-...-|||+-..+
T Consensus 698 ~GHrVLIFSQMVRmLDIL~eYL~~-----r~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLatAD 772 (1373)
T KOG0384|consen 698 GGHRVLIFSQMVRMLDILAEYLSL-----RGYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLATAD 772 (1373)
T ss_pred CCceEEEhHHHHHHHHHHHHHHHH-----cCCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccccc
Confidence 456899998777777777777765 67888899999999999999998864 3467899999999999999887
Q ss_pred EEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHHHHHH-hhccCCCcccccChHHHH
Q psy3476 501 FVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEEQYSL-LAEYSTPEIRRVSIDSLL 576 (1417)
Q Consensus 501 ~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~~~~~-l~~~~~pEI~r~~L~~~l 576 (1417)
-||- ||..-+.+.=. |-..||-|-| .=.+|||+|+..++. +-+- --....|+..+
T Consensus 773 TVII--------FDSDWNPQNDL----------QAqARaHRIGQkk~VnVYRLVTk~TvEeEilER---Ak~KmvLD~aV 831 (1373)
T KOG0384|consen 773 TVII--------FDSDWNPQNDL----------QAQARAHRIGQKKHVNVYRLVTKNTVEEEILER---AKLKMVLDHAV 831 (1373)
T ss_pred eEEE--------eCCCCCcchHH----------HHHHHHHhhcccceEEEEEEecCCchHHHHHHH---HHHHhhhHHHH
Confidence 7775 66544332222 4444555555 467899999887763 2110 11223567777
Q ss_pred HHHHhh
Q psy3476 577 LSLVCM 582 (1417)
Q Consensus 577 L~lk~l 582 (1417)
+|....
T Consensus 832 IQ~m~t 837 (1373)
T KOG0384|consen 832 IQRMDT 837 (1373)
T ss_pred HHhhcc
Confidence 766543
|
|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=4.8e-05 Score=94.72 Aligned_cols=103 Identities=15% Similarity=0.203 Sum_probs=74.8
Q ss_pred cEEEEeCCHHHHHHHHHHHHh----hh----hccCCcE--EEEecCCCCHHHHHHHhc---cCCCCCceEEEecchhhcc
Q psy3476 427 DVLIFMSGISEISSIVRAAQE----YN----EKSQGWI--VLPLHSTLSLEEQDRVFH---YAPEGLRKCIVSTNIAETS 493 (1417)
Q Consensus 427 ~iLVFl~~~~eie~la~~L~~----~~----~~~~~~~--V~~LHs~Ls~~eR~~v~~---~f~~G~rkVLVATnIae~G 493 (1417)
..+-||.+.++...+++.+.. |. ....++. +-...|.|...+|...+. .|++..-||+--.-.+..|
T Consensus 462 RAIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~neckIlSNaRcLSEG 541 (1518)
T COG4889 462 RAIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPNECKILSNARCLSEG 541 (1518)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcchheeeccchhhhcC
Confidence 467788777776666665432 11 1123344 344567888888865543 5677888999888899999
Q ss_pred CCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeE
Q psy3476 494 ITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547 (1417)
Q Consensus 494 IdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~c 547 (1417)
||+|..+-||- ||+...+...+ |-+||.-|..+|+-
T Consensus 542 VDVPaLDsViF--------f~pr~smVDIV----------QaVGRVMRKa~gK~ 577 (1518)
T COG4889 542 VDVPALDSVIF--------FDPRSSMVDIV----------QAVGRVMRKAKGKK 577 (1518)
T ss_pred CCccccceEEE--------ecCchhHHHHH----------HHHHHHHHhCcCCc
Confidence 99999999997 88887666655 99999999887653
|
|
| >KOG0390|consensus | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0004 Score=88.74 Aligned_cols=105 Identities=18% Similarity=0.275 Sum_probs=77.7
Q ss_pred EEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCC--C-ceEEEecchhhccCCcCCeEEEEcC
Q psy3476 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEG--L-RKCIVSTNIAETSITIDGIRFVVDS 505 (1417)
Q Consensus 429 LVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G--~-rkVLVATnIae~GIdIP~V~~VIds 505 (1417)
.|.+.....+..+.+.+-++ .++.++.|||.++..+|+.+.+.|.+- . .-.+.+|-.-+-||++=+...||-
T Consensus 598 ~v~Isny~~tldl~e~~~~~----~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil- 672 (776)
T KOG0390|consen 598 SVLISNYTQTLDLFEQLCRW----RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLIL- 672 (776)
T ss_pred EEEeccHHHHHHHHHHHHhh----cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEE-
Confidence 34445555555555555442 378999999999999999999999643 3 345677788889999999888887
Q ss_pred CcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHHH
Q psy3476 506 GKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEEQ 555 (1417)
Q Consensus 506 G~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~~ 555 (1417)
||+.-+...=. |-++||=|.| +-+.|+|.+...
T Consensus 673 -------~D~dWNPa~d~----------QAmaR~~RdGQKk~v~iYrLlatGt 708 (776)
T KOG0390|consen 673 -------FDPDWNPAVDQ----------QAMARAWRDGQKKPVYIYRLLATGT 708 (776)
T ss_pred -------eCCCCCchhHH----------HHHHHhccCCCcceEEEEEeecCCC
Confidence 88776544433 7788888887 677899987653
|
|
| >KOG0392|consensus | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0011 Score=86.07 Aligned_cols=113 Identities=17% Similarity=0.217 Sum_probs=84.0
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCC-CceE-EEecchhhccCCcCCeEEE
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEG-LRKC-IVSTNIAETSITIDGIRFV 502 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G-~rkV-LVATnIae~GIdIP~V~~V 502 (1417)
+.++||||--+..++-+.+-|.+ +..+.+.-..|.|..++.+|.++.++|.++ .+.| +++|-+..-|+|+-+.+-|
T Consensus 1340 qHRiLIFcQlK~mlDlVekDL~k--~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTV 1417 (1549)
T KOG0392|consen 1340 QHRILIFCQLKSMLDLVEKDLFK--KYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTV 1417 (1549)
T ss_pred cceeEEeeeHHHHHHHHHHHHhh--hhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceE
Confidence 35799999999988888877754 223455667899999999999999999998 5776 5688999999999999988
Q ss_pred EcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHHHHH
Q psy3476 503 VDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEEQYS 557 (1417)
Q Consensus 503 IdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~~~~ 557 (1417)
|- -+-.|+|-+ . +|-.-||-|-| -=.+|||+++...+
T Consensus 1418 VF----vEHDWNPMr---D-----------LQAMDRAHRIGQKrvVNVyRlItrGTLE 1457 (1549)
T KOG0392|consen 1418 VF----VEHDWNPMR---D-----------LQAMDRAHRIGQKRVVNVYRLITRGTLE 1457 (1549)
T ss_pred EE----EecCCCchh---h-----------HHHHHHHHhhcCceeeeeeeehhcccHH
Confidence 85 111133322 2 26666666666 35589999887654
|
|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00041 Score=64.66 Aligned_cols=51 Identities=22% Similarity=0.373 Sum_probs=41.1
Q ss_pred HHhcCCeEEEEcCCCcchhHHHHHHHHHcC------CCcEEEecchHHHHHHHHHHH
Q psy3476 50 TVLKERVVIIAGDTGCGKSTQIPQYLVQAG------FQRIACTQPRRIACISLSKRV 100 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt~ipq~ile~~------~~~i~~tqPrr~aa~~~a~rv 100 (1417)
++.++++++|.||.|||||+.+.+.+.+.. ..+|++..|++.++..+.+++
T Consensus 6 al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 6 ALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 555678888999999999987666554432 468999999999999998887
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0075 Score=73.62 Aligned_cols=245 Identities=15% Similarity=0.152 Sum_probs=150.8
Q ss_pred cccccchhhhhhcccccc----ccccccCCCCccEEEEecCccc-ccCcchHHHHHHHHhccCC----------------
Q psy3476 292 LHGDFLLGVIKCLLHSTV----EVAADNFLSSYDVLVLDEIHER-HLHGDFLLGVIKCLLHSTA---------------- 350 (1417)
Q Consensus 292 ~~~d~~lgt~~~L~~~~~----~~~~d~~L~~~~~VIlDEaHER-~l~~d~ll~llk~l~~~r~---------------- 350 (1417)
.++|+++++|-.|-...- ......+|+.+.++|+|.+|-. +-+.+.+..+++.+...+.
T Consensus 130 y~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ld 209 (442)
T PF06862_consen 130 YSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLD 209 (442)
T ss_pred ccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHc
Confidence 357888888876542111 1233367999999999999921 2233555555555544331
Q ss_pred -----CCcEEEEccCCCHH---HHHHHhccCceEEEeCCc----------ccceeEEeccccccccccccCCCCChH---
Q psy3476 351 -----EVKIILMSATINIE---LFHTYFNRIAKIIKVPGR----------LYPIQLEYHPIVELDRTKSEKLDPGPY--- 409 (1417)
Q Consensus 351 -----~~qvIlmSATln~~---~~~~~f~~~~~vi~v~gr----------~~pv~v~~~~~~~~~~~~~~~~~~~~~--- 409 (1417)
-.|.|++|+..+++ .+...+.+-...+.+... ..++...|.......... .....+
T Consensus 210 g~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~---~~d~Rf~yF 286 (442)
T PF06862_consen 210 GQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPAD---DPDARFKYF 286 (442)
T ss_pred CcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcch---hhhHHHHHH
Confidence 26899999998765 233333221222221111 112222222211111000 000111
Q ss_pred -HHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecc
Q psy3476 410 -IRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488 (1417)
Q Consensus 410 -~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATn 488 (1417)
..++..+.+ ....+.+|||+|+.=+-..+-..|++ .++....+|--.+..+-.+.-..|..|+.+|++-|-
T Consensus 287 ~~~iLP~l~~---~~~~~~~LIfIPSYfDfVRlRN~lk~-----~~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TE 358 (442)
T PF06862_consen 287 TKKILPQLKR---DSKMSGTLIFIPSYFDFVRLRNYLKK-----ENISFVQISEYTSNSDISRARSQFFHGRKPILLYTE 358 (442)
T ss_pred HHHHHHHhhh---ccCCCcEEEEecchhhhHHHHHHHHh-----cCCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEh
Confidence 123333322 35568899999999999999888875 678888999889999988889999999999999995
Q ss_pred hhh--ccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCC----CCCCeEEEecCHHHHHHhhcc
Q psy3476 489 IAE--TSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGR----TGPGVCYRLYSEEQYSLLAEY 562 (1417)
Q Consensus 489 Iae--~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR----~g~G~cy~L~t~~~~~~l~~~ 562 (1417)
=+- +=..|-+|+.||- |.+|....-|. ++..+.+.... .+...|..||++-+.-.++..
T Consensus 359 R~HFfrRy~irGi~~viF--------Y~~P~~p~fY~-------El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 359 RFHFFRRYRIRGIRHVIF--------YGPPENPQFYS-------ELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred HHhhhhhceecCCcEEEE--------ECCCCChhHHH-------HHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 432 3467888999997 88887765554 33444443332 225889999999887666543
|
; GO: 0005634 nucleus |
| >KOG1000|consensus | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.051 Score=65.52 Aligned_cols=79 Identities=13% Similarity=0.141 Sum_probs=65.7
Q ss_pred CCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCC--ceEEEecchhhccCCcCC
Q psy3476 421 PRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGL--RKCIVSTNIAETSITIDG 498 (1417)
Q Consensus 421 ~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~--rkVLVATnIae~GIdIP~ 498 (1417)
...++.+.+||+.-..-.+.+...+.+ .++..+.+.|..+..+|...-+.|.... +--|++-..+..|+|+.+
T Consensus 488 ~d~~~~KflVFaHH~~vLd~Iq~~~~~-----r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tA 562 (689)
T KOG1000|consen 488 PDAPPRKFLVFAHHQIVLDTIQVEVNK-----RKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTA 562 (689)
T ss_pred ccCCCceEEEEehhHHHHHHHHHHHHH-----cCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeec
Confidence 334567899999999888888888876 6788899999999999999999887553 344778888999999999
Q ss_pred eEEEEc
Q psy3476 499 IRFVVD 504 (1417)
Q Consensus 499 V~~VId 504 (1417)
...||-
T Consensus 563 a~~VVF 568 (689)
T KOG1000|consen 563 ASVVVF 568 (689)
T ss_pred cceEEE
Confidence 998885
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00017 Score=94.01 Aligned_cols=119 Identities=23% Similarity=0.221 Sum_probs=77.8
Q ss_pred hhhhHHHhhhccccccC---CCcccc-cccHHHH---hhhh-cCCcc--------chhhcchHHHHHHHHHhcCCCcccC
Q psy3476 795 EEEEEEEEGERLESRTG---PGVCYR-LYSEEQY---SLLA-EYSTP--------EIRRVSIDSLLLSLVCMGLGDVRKF 858 (1417)
Q Consensus 795 ~s~~~~~qR~~~agR~~---pG~CyR-Lyt~~~~---~~l~-~~~~P--------EI~r~~L~~~vL~lk~~g~~~~~~f 858 (1417)
+|..+..||.|||||.+ .|.|+= +++++.+ .++- ..+.| ++.+.++...+..-...+..++.+|
T Consensus 348 ~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~~l~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~ 427 (674)
T PRK01172 348 LSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKKYLSGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILF 427 (674)
T ss_pred CCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHHHHcCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHH
Confidence 68889999999999986 555443 3444333 3322 23222 4444443333322222222444444
Q ss_pred ---CCC--CCCC---ccchHHHHHHHhhcccccccc--ccchhhhhcccCCCCccccchhhhccc
Q psy3476 859 ---PFL--EAPP---AENIESSVRSLTQHGAIDSKE--RVTTLGRFLSDLPVDIPLGKMLVFGSM 913 (1417)
Q Consensus 859 ---~~l--~~P~---~~~l~~A~~~L~~lgald~~~--~lT~lG~~l~~lPvdp~lak~Ll~~~~ 913 (1417)
.|+ ++++ .+.++.|++.|...|+|++++ .+|++|+.++.+|++|..++++..+..
T Consensus 428 l~~tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~ 492 (674)
T PRK01172 428 YNETLMAIQNGVDEIDYYIESSLKFLKENGFIKGDVTLRATRLGKLTSDLYIDPESALILKSAFD 492 (674)
T ss_pred HHhhhhHhcCchHHHHHHHHHHHHHHHHCCCcccCCcEeECHHHHHHHHhCCCHHHHHHHHHHhh
Confidence 444 4432 456899999999999998654 579999999999999999999876644
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0041 Score=79.39 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=45.3
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHH----cCCCcEEEecchHHHHHHHHHH
Q psy3476 43 YKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ----AGFQRIACTQPRRIACISLSKR 99 (1417)
Q Consensus 43 ~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile----~~~~~i~~tqPrr~aa~~~a~r 99 (1417)
+-+.|.+++.+++.+++.|+||+|||......++. ....+++|.-|++..+.|+.+.
T Consensus 5 ~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~ 65 (636)
T TIGR03117 5 FYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSE 65 (636)
T ss_pred HHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHH
Confidence 34667888889999999999999999876555443 2246899999999998888863
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.007 Score=66.76 Aligned_cols=58 Identities=28% Similarity=0.504 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHhc--CCeEEEEcCCCcchhHHHHHH---HHHcCCCcEEEecchHHHHHHHHHH
Q psy3476 41 AQYKQEIIDTVLK--ERVVIIAGDTGCGKSTQIPQY---LVQAGFQRIACTQPRRIACISLSKR 99 (1417)
Q Consensus 41 ~~~q~~il~~i~~--~~~~iI~a~TGsGKTt~ipq~---ile~~~~~i~~tqPrr~aa~~~a~r 99 (1417)
..-|.+++..+.. +++++|.|+.|||||+.+-.. +.+.+ .+|+++.|+.-|+..+.+.
T Consensus 3 ~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~~g-~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 3 NEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEAAG-KRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp -HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHHTT---EEEEESSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHhCC-CeEEEECCcHHHHHHHHHh
Confidence 3568888888853 358999999999999864432 23333 6788888887777666554
|
|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.014 Score=76.04 Aligned_cols=157 Identities=13% Similarity=0.085 Sum_probs=94.4
Q ss_pred hHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCc-eEEEe
Q psy3476 408 PYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLR-KCIVS 486 (1417)
Q Consensus 408 ~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~r-kVLVA 486 (1417)
....+...+..... ..+|.+|||+|+.+..+.+++.+..... ......+|..+.. ..++.|+.+.- .++|+
T Consensus 463 ~~~~~~~~i~~~~~-~~~~~~lvlF~Sy~~l~~~~~~~~~~~~----~~~v~~q~~~~~~---~~l~~f~~~~~~~~lv~ 534 (654)
T COG1199 463 LLAKLAAYLREILK-ASPGGVLVLFPSYEYLKRVAERLKDERS----TLPVLTQGEDERE---ELLEKFKASGEGLILVG 534 (654)
T ss_pred HHHHHHHHHHHHHh-hcCCCEEEEeccHHHHHHHHHHHhhcCc----cceeeecCCCcHH---HHHHHHHHhcCCeEEEe
Confidence 34455555555544 3456999999999999999999876211 1345567776655 44444444333 89999
Q ss_pred cchhhccCCcCCe--EEEEcCCcccce----------ecccCCC--ccccceeecCHhhHHhhcCcCCCCC--CCeEEEe
Q psy3476 487 TNIAETSITIDGI--RFVVDSGKVKEM----------SYDVTAK--MSTLQEFWISKASAEQRKGRAGRTG--PGVCYRL 550 (1417)
Q Consensus 487 TnIae~GIdIP~V--~~VIdsG~~k~~----------~yD~~~~--~~~l~~~~ISkasa~QR~GRAGR~g--~G~cy~L 550 (1417)
|..+..|||+|+- +.||-.|..-.. .|....+ .-.+...+.......|-+||+=|.. .|.++.+
T Consensus 535 ~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivll 614 (654)
T COG1199 535 GGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLL 614 (654)
T ss_pred eccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEe
Confidence 9999999999975 555544543221 1111111 1112223444556789999999976 4888765
Q ss_pred cC---HHHH-HHhhccCCCcccccCh
Q psy3476 551 YS---EEQY-SLLAEYSTPEIRRVSI 572 (1417)
Q Consensus 551 ~t---~~~~-~~l~~~~~pEI~r~~L 572 (1417)
=. ...+ ..+++...+.+.....
T Consensus 615 D~R~~~~~y~~~l~~~l~~~~~~~~~ 640 (654)
T COG1199 615 DKRYATKRYGKLLLDSLPPFPKSKDL 640 (654)
T ss_pred cccchhhhHHHHHHHhCCCCcccccc
Confidence 32 2223 3455555555554433
|
|
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.01 Score=76.04 Aligned_cols=62 Identities=24% Similarity=0.425 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHH---HHcC---CCcEEEecchHHHHHHHHHHHHHH
Q psy3476 42 QYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYL---VQAG---FQRIACTQPRRIACISLSKRVAYE 103 (1417)
Q Consensus 42 ~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~i---le~~---~~~i~~tqPrr~aa~~~a~rva~e 103 (1417)
.+|++++.....+++++|.|++|+||||.+-..+ .+.. ..+|.++.|+.-||..+.+.+...
T Consensus 155 d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~ 222 (615)
T PRK10875 155 DWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKA 222 (615)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhh
Confidence 6899998888899999999999999999865544 2322 247999999999988887766543
|
|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.014 Score=74.63 Aligned_cols=62 Identities=26% Similarity=0.421 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHH---HHcC----CCcEEEecchHHHHHHHHHHHHHH
Q psy3476 42 QYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYL---VQAG----FQRIACTQPRRIACISLSKRVAYE 103 (1417)
Q Consensus 42 ~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~i---le~~----~~~i~~tqPrr~aa~~~a~rva~e 103 (1417)
.+|++++.....+++++|+|+.|+||||.+-..+ .+.. ..+|.++.|+--||..+.+.+...
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~ 216 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKA 216 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhh
Confidence 6788899999999999999999999999765543 3322 147999999998888777766443
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.024 Score=74.20 Aligned_cols=128 Identities=11% Similarity=0.127 Sum_probs=82.3
Q ss_pred HHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCC----CCCceEE
Q psy3476 409 YIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAP----EGLRKCI 484 (1417)
Q Consensus 409 ~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~----~G~rkVL 484 (1417)
...+.+.|.+.+. .+|.+|||+++.+..+.+++.+... .+..+ ..++.. .+.++++.|+ .|...|+
T Consensus 520 ~~~~~~~i~~l~~--~~gg~LVlFtSy~~l~~v~~~l~~~----~~~~l-l~Q~~~---~~~~ll~~f~~~~~~~~~~VL 589 (697)
T PRK11747 520 TAEMAEFLPELLE--KHKGSLVLFASRRQMQKVADLLPRD----LRLML-LVQGDQ---PRQRLLEKHKKRVDEGEGSVL 589 (697)
T ss_pred HHHHHHHHHHHHh--cCCCEEEEeCcHHHHHHHHHHHHHh----cCCcE-EEeCCc---hHHHHHHHHHHHhccCCCeEE
Confidence 4456666666654 3455899999999999999998652 12233 235543 3555664444 5778899
Q ss_pred EecchhhccCCcCC--eEEEEcCCcccceecccCCC--------------ccccce--eecCHhhHHhhcCcCCCCC--C
Q psy3476 485 VSTNIAETSITIDG--IRFVVDSGKVKEMSYDVTAK--------------MSTLQE--FWISKASAEQRKGRAGRTG--P 544 (1417)
Q Consensus 485 VATnIae~GIdIP~--V~~VIdsG~~k~~~yD~~~~--------------~~~l~~--~~ISkasa~QR~GRAGR~g--~ 544 (1417)
++|..+..|||+|+ .+.||-.|+. |.+|.. -+.+.. .|--...+.|-+||.=|.. .
T Consensus 590 ~g~~sf~EGVD~pGd~l~~vII~kLP----F~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~ 665 (697)
T PRK11747 590 FGLQSFAEGLDLPGDYLTQVIITKIP----FAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDR 665 (697)
T ss_pred EEeccccccccCCCCceEEEEEEcCC----CCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCce
Confidence 99999999999987 6777766653 222221 111111 1122334789999999987 5
Q ss_pred CeEEEe
Q psy3476 545 GVCYRL 550 (1417)
Q Consensus 545 G~cy~L 550 (1417)
|..+.+
T Consensus 666 G~i~il 671 (697)
T PRK11747 666 GRVTIL 671 (697)
T ss_pred EEEEEE
Confidence 877655
|
|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0094 Score=66.15 Aligned_cols=62 Identities=23% Similarity=0.356 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhcCCe-EEEEcCCCcchhHHHHHHHHHc----------CCCcEEEecchHHHHHHHHHHHHH
Q psy3476 41 AQYKQEIIDTVLKERV-VIIAGDTGCGKSTQIPQYLVQA----------GFQRIACTQPRRIACISLSKRVAY 102 (1417)
Q Consensus 41 ~~~q~~il~~i~~~~~-~iI~a~TGsGKTt~ipq~ile~----------~~~~i~~tqPrr~aa~~~a~rva~ 102 (1417)
...|.+++..+.+... ++|.||.|||||+.+...+... ...+|+++.|+..|+..+.+++.+
T Consensus 3 n~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 3 NESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 4568888888888876 9999999999998776655443 225799999999999999998877
|
|
| >KOG1803|consensus | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0046 Score=76.20 Aligned_cols=60 Identities=18% Similarity=0.385 Sum_probs=46.4
Q ss_pred HHHHHHHHHHhcC-CeEEEEcCCCcchhHHHHHHHHHc--CCCcEEEecchHHHHHHHHHHHH
Q psy3476 42 QYKQEIIDTVLKE-RVVIIAGDTGCGKSTQIPQYLVQA--GFQRIACTQPRRIACISLSKRVA 101 (1417)
Q Consensus 42 ~~q~~il~~i~~~-~~~iI~a~TGsGKTt~ipq~ile~--~~~~i~~tqPrr~aa~~~a~rva 101 (1417)
..|.+++....+. ...+|.||+|+|||+.+...|... ...+|+|+.|+.+|.-.+-+|+.
T Consensus 188 ~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 188 SSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred HHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 4566777766655 789999999999997655555442 22689999999999999888865
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.0088 Score=66.04 Aligned_cols=51 Identities=25% Similarity=0.338 Sum_probs=35.5
Q ss_pred CeEEEEcCCCcchhHHHHHHHHH---cCC-CcEEEecchHHHHHHHHHHHHHHHc
Q psy3476 55 RVVIIAGDTGCGKSTQIPQYLVQ---AGF-QRIACTQPRRIACISLSKRVAYETL 105 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ipq~ile---~~~-~~i~~tqPrr~aa~~~a~rva~e~~ 105 (1417)
++++++||||+||||.+...... .+. ..++++-.-|++|..-.+..|+.++
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~ 56 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILG 56 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhc
Confidence 47899999999999976543322 222 2467777778887777777777664
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >KOG0952|consensus | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.002 Score=82.96 Aligned_cols=147 Identities=15% Similarity=0.167 Sum_probs=88.3
Q ss_pred ccccchhhhhhccccccccccccCCCCccEEEEecCcccccC-cchHHHHHHHHhc----cCCCCcEEEEccCC-CHHHH
Q psy3476 293 HGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLH-GDFLLGVIKCLLH----STAEVKIILMSATI-NIELF 366 (1417)
Q Consensus 293 ~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~-~d~ll~llk~l~~----~r~~~qvIlmSATl-n~~~~ 366 (1417)
++++++.||++++.....|.....+.+++.+|+||.|.-..+ +..+..+..+... ..+..+++++|--+ |..++
T Consensus 1020 ~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~na~dl 1099 (1230)
T KOG0952|consen 1020 EADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALANANDL 1099 (1230)
T ss_pred cCceEEcccccccCccccccchhhhccccceeecccccccCCCcceEEEEeeccccCccccCcchhhhhHhhhhhccHHH
Confidence 346677888888888888888899999999999999933322 2233222222211 23456777776444 89999
Q ss_pred HHHhccC-ceEEEeCCcccceeEEecccccccc-ccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHH
Q psy3476 367 HTYFNRI-AKIIKVPGRLYPIQLEYHPIVELDR-TKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRA 444 (1417)
Q Consensus 367 ~~~f~~~-~~vi~v~gr~~pv~v~~~~~~~~~~-~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~ 444 (1417)
++|++.. .+.+.-.-|+.|.++++...+...+ ......+. ...+.+... .+..++|||+.+++.....+..
T Consensus 1100 a~wl~~~~~~nf~~svrpvp~~~~i~gfp~~~~cprm~smnk----pa~qaik~~---sp~~p~lifv~srrqtrlta~~ 1172 (1230)
T KOG0952|consen 1100 ADWLNIKDMYNFRPSVRPVPLEVHIDGFPGQHYCPRMMSMNK----PAFQAIKTH---SPIKPVLIFVSSRRQTRLTALD 1172 (1230)
T ss_pred HHHhCCCCcCCCCcccccCCceEeecCCCchhcchhhhhccc----HHHHHHhcC---CCCCceEEEeecccccccchHh
Confidence 9999532 2223334567777777665554222 11111111 123333322 4568999999988776655554
Q ss_pred HH
Q psy3476 445 AQ 446 (1417)
Q Consensus 445 L~ 446 (1417)
|.
T Consensus 1173 li 1174 (1230)
T KOG0952|consen 1173 LI 1174 (1230)
T ss_pred HH
Confidence 43
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.025 Score=74.36 Aligned_cols=196 Identities=14% Similarity=0.095 Sum_probs=105.4
Q ss_pred CCcEEEEccCC-CHHHHHHHhccCceEEEeCCcccce---eEEecccccc----ccccccCCCCChHHHHHHHHHhhCCC
Q psy3476 351 EVKIILMSATI-NIELFHTYFNRIAKIIKVPGRLYPI---QLEYHPIVEL----DRTKSEKLDPGPYIRILSIIDKKYPR 422 (1417)
Q Consensus 351 ~~qvIlmSATl-n~~~~~~~f~~~~~vi~v~gr~~pv---~v~~~~~~~~----~~~~~~~~~~~~~~~il~~l~~~~~~ 422 (1417)
-..+|++|||+ +.+.|.+.++-..+.....+..+|- .+........ ........++.....+...|.+...
T Consensus 441 ~~svil~SgTL~p~~~~~~~Lg~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~i~~~~~- 519 (705)
T TIGR00604 441 VRSVILASGTLSPLDAFPRNLGFNPVSQDSPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGELLVEFSK- 519 (705)
T ss_pred cCEEEEecccCCcHHHHHHHhCCCCccceecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHHHHHHhh-
Confidence 34699999999 6777887775322222111122221 1111111000 0000111112234455566666554
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhh--c-cCCcEEEEecCCCCHHHHHHHhccCCC----CCceEEEec--chhhcc
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNE--K-SQGWIVLPLHSTLSLEEQDRVFHYAPE----GLRKCIVST--NIAETS 493 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~--~-~~~~~V~~LHs~Ls~~eR~~v~~~f~~----G~rkVLVAT--nIae~G 493 (1417)
..+|.+|||.|+....+.+++.+..... . .....++.=..+. .++..+++.|+. |.-.|++|+ ..+..|
T Consensus 520 ~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~~--~~~~~~l~~f~~~~~~~~gavL~av~gGk~sEG 597 (705)
T TIGR00604 520 IIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKDA--QETSDALERYKQAVSEGRGAVLLSVAGGKVSEG 597 (705)
T ss_pred cCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCCc--chHHHHHHHHHHHHhcCCceEEEEecCCcccCc
Confidence 3468899999999999999988765211 0 0111222211221 466778877743 455699999 889999
Q ss_pred CCcCC--eEEEEcCCcccceecccCC-------------Ccc-ccceeecCHhhHHhhcCcCCCCCC--CeEEEe
Q psy3476 494 ITIDG--IRFVVDSGKVKEMSYDVTA-------------KMS-TLQEFWISKASAEQRKGRAGRTGP--GVCYRL 550 (1417)
Q Consensus 494 IdIP~--V~~VIdsG~~k~~~yD~~~-------------~~~-~l~~~~ISkasa~QR~GRAGR~g~--G~cy~L 550 (1417)
||++| .+.||-.|+.-....|+.. +.. .+. .+-.--...|-+||+=|... |..+.+
T Consensus 598 IDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y-~~~a~~~v~QaiGR~IR~~~D~G~iill 671 (705)
T TIGR00604 598 IDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFY-EFDAMRAVNQAIGRVIRHKDDYGSIVLL 671 (705)
T ss_pred cccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHH-HHHHHHHHHHHhCccccCcCceEEEEEE
Confidence 99997 4777777775421111100 000 011 11122456799999999884 665543
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.015 Score=66.82 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=18.4
Q ss_pred HHHhcCCeEEEEcCCCcchhHH
Q psy3476 49 DTVLKERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 49 ~~i~~~~~~iI~a~TGsGKTt~ 70 (1417)
+.+..+.++++.||+|+|||+.
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThL 114 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHL 114 (254)
T ss_pred chhhcCceEEEEeCCCCchHHH
Confidence 4456778999999999999973
|
|
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.12 Score=62.83 Aligned_cols=53 Identities=15% Similarity=0.144 Sum_probs=33.2
Q ss_pred CCCccEEEEecCcccccCcc-hHHHHHHHHhccCCC-CcEEEEccCCCHHHHHHHh
Q psy3476 317 LSSYDVLVLDEIHERHLHGD-FLLGVIKCLLHSTAE-VKIILMSATINIELFHTYF 370 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d-~ll~llk~l~~~r~~-~qvIlmSATln~~~~~~~f 370 (1417)
+.++++||||++. |+.... .+..+.+.+....++ -.++++|||...+.+.+.|
T Consensus 252 ~~~~DlVLIDTaG-r~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~ 306 (388)
T PRK12723 252 SKDFDLVLVDTIG-KSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIF 306 (388)
T ss_pred hCCCCEEEEcCCC-CCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHH
Confidence 4678999999998 654322 222333333333333 4678899999777666665
|
|
| >PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.036 Score=64.31 Aligned_cols=40 Identities=18% Similarity=0.184 Sum_probs=22.9
Q ss_pred hcCCeEEEEcCCCcchhHHHHHHHH---HcCCC----cEEEecchHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQIPQYLV---QAGFQ----RIACTQPRRI 91 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ipq~il---e~~~~----~i~~tqPrr~ 91 (1417)
....-.+++-++|+|||.++..++. +.... +++|..|..+
T Consensus 23 ~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~~l 69 (299)
T PF00176_consen 23 SPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPSSL 69 (299)
T ss_dssp TTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-TTT
T ss_pred cCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeeccch
Confidence 3456789999999999988776654 33322 3777777633
|
g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W. |
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.049 Score=71.48 Aligned_cols=61 Identities=23% Similarity=0.403 Sum_probs=46.2
Q ss_pred cCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHH--HH-cC-CCcEEEecchHHHHHHH
Q psy3476 36 NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYL--VQ-AG-FQRIACTQPRRIACISL 96 (1417)
Q Consensus 36 ~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~i--le-~~-~~~i~~tqPrr~aa~~~ 96 (1417)
....+...|.+++..+..+++++|.|+.|+||||.+-..+ ++ .+ ..+|+++.|+--||..+
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L 384 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRL 384 (720)
T ss_pred cCCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHH
Confidence 4466788999999999999999999999999999754332 22 22 25688888887776544
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.19 Score=60.63 Aligned_cols=54 Identities=20% Similarity=0.218 Sum_probs=36.5
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccC-CCCcEEEEccCCCHHHHHHHh
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHST-AEVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r-~~~qvIlmSATln~~~~~~~f 370 (1417)
.+.++++|.||=+- |+........=++.+.... +.--.+.+|||...+++.+.+
T Consensus 278 ~l~~~d~ILVDTaG-rs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~ 332 (407)
T COG1419 278 ALRDCDVILVDTAG-RSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEII 332 (407)
T ss_pred HhhcCCEEEEeCCC-CCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHH
Confidence 46778999999997 6655544444444444433 444567799999877777666
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=95.59 E-value=0.12 Score=52.10 Aligned_cols=27 Identities=19% Similarity=0.368 Sum_probs=20.6
Q ss_pred HHHHHHHHhc--CCeEEEEcCCCcchhHH
Q psy3476 44 KQEIIDTVLK--ERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 44 q~~il~~i~~--~~~~iI~a~TGsGKTt~ 70 (1417)
.+++...+.. +..++|.||+|||||+.
T Consensus 7 ~~~i~~~~~~~~~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 7 IEALREALELPPPKNLLLYGPPGTGKTTL 35 (151)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHH
Confidence 3445555555 78999999999999974
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.098 Score=63.18 Aligned_cols=49 Identities=18% Similarity=0.235 Sum_probs=32.6
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhcc-CCCCcEEEEccCCCHHHH
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHS-TAEVKIILMSATINIELF 366 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~-r~~~qvIlmSATln~~~~ 366 (1417)
+.+.++|+||++- +....+.+...+..+... .+.-.++++|||...+.+
T Consensus 213 l~~~DlVLIDTaG-~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l 262 (374)
T PRK14722 213 LRNKHMVLIDTIG-MSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTL 262 (374)
T ss_pred hcCCCEEEEcCCC-CCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHH
Confidence 5678999999997 554445555555555332 344568889999965443
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.26 Score=60.94 Aligned_cols=52 Identities=25% Similarity=0.324 Sum_probs=29.4
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhc-c-CCCCcEEEEccCCCHHHHHHH
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLH-S-TAEVKIILMSATINIELFHTY 369 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~-~-r~~~qvIlmSATln~~~~~~~ 369 (1417)
+.++++||||.+- +.....-....+..+.. . .+....+++|||.....+.+.
T Consensus 297 ~~~~DlVlIDt~G-~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~ 350 (424)
T PRK05703 297 LRDCDVILIDTAG-RSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDI 350 (424)
T ss_pred hCCCCEEEEeCCC-CCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHH
Confidence 3468999999996 33222222222333322 2 334557889999965555443
|
|
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.025 Score=64.54 Aligned_cols=54 Identities=19% Similarity=0.377 Sum_probs=44.2
Q ss_pred cCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHH----HcCCCcEEEecch
Q psy3476 36 NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLV----QAGFQRIACTQPR 89 (1417)
Q Consensus 36 ~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~il----e~~~~~i~~tqPr 89 (1417)
.--|....|...+.++.+++++++.||+|||||+....+.+ +..+.+|+++.|.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~ 113 (262)
T PRK10536 56 PILARNEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPV 113 (262)
T ss_pred cccCCCHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCC
Confidence 44677889999999999999999999999999997665544 3345678888876
|
|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.019 Score=63.59 Aligned_cols=51 Identities=24% Similarity=0.425 Sum_probs=36.4
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHH----HHcCCCcEEEecch
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYL----VQAGFQRIACTQPR 89 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~i----le~~~~~i~~tqPr 89 (1417)
|....|...++++.+.+++++.||.|||||....... .+..+.+|+++.|.
T Consensus 4 p~~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~ 58 (205)
T PF02562_consen 4 PKNEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPP 58 (205)
T ss_dssp --SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S
T ss_pred CCCHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecC
Confidence 6678899999999999999999999999998655443 33445789999876
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >TIGR00376 DNA helicase, putative | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.04 Score=71.33 Aligned_cols=65 Identities=25% Similarity=0.356 Sum_probs=52.1
Q ss_pred CcHHHHHHHHHHHhcC-CeEEEEcCCCcchhHHHHHHHHHc--CCCcEEEecchHHHHHHHHHHHHHH
Q psy3476 39 PVAQYKQEIIDTVLKE-RVVIIAGDTGCGKSTQIPQYLVQA--GFQRIACTQPRRIACISLSKRVAYE 103 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~-~~~iI~a~TGsGKTt~ipq~ile~--~~~~i~~tqPrr~aa~~~a~rva~e 103 (1417)
.+...|.+++.....+ ++++|.||+|+|||+.+...+.+. ...+|+++.|+..|+..+.+++...
T Consensus 157 ~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 157 NLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 4577888888877765 899999999999998776655442 2248999999999999999988763
|
The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases. |
| >PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.036 Score=64.67 Aligned_cols=63 Identities=22% Similarity=0.360 Sum_probs=48.4
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCcchhHHHHH---HHHHcC-C--CcEEEecchHHHHHHHHHHHHHHHcc
Q psy3476 42 QYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQ---YLVQAG-F--QRIACTQPRRIACISLSKRVAYETLS 106 (1417)
Q Consensus 42 ~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq---~ile~~-~--~~i~~tqPrr~aa~~~a~rva~e~~~ 106 (1417)
.-|.+++.. .++.++|.|..|||||+.+.. +++..+ . .+|+|+.+++.||..+..|+...++.
T Consensus 3 ~eQ~~~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 3 DEQRRIIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp HHHHHHHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 457778777 677889999999999997654 444444 2 58999999999999999999886654
|
THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A .... |
| >COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.28 E-value=1 Score=61.24 Aligned_cols=51 Identities=18% Similarity=0.192 Sum_probs=37.1
Q ss_pred CCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCC
Q psy3476 476 APEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545 (1417)
Q Consensus 476 f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G 545 (1417)
.++...++||-+|.+=||.|-|...... .|-+-.-..++ |=.-|+-|.-++
T Consensus 589 ~~~d~~kilIV~dmlLTGFDaP~L~TmY---------vDK~Lk~H~L~----------QAisRtNR~~~~ 639 (962)
T COG0610 589 LKDDPLDLLIVVDMLLTGFDAPCLNTLY---------VDKPLKYHNLI----------QAISRTNRVFPG 639 (962)
T ss_pred CcCCCCCEEEEEccccccCCccccceEE---------eccccccchHH----------HHHHHhccCCCC
Confidence 5667799999999999999999765443 34454444455 888888887543
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.47 Score=56.77 Aligned_cols=44 Identities=16% Similarity=0.226 Sum_probs=30.5
Q ss_pred CCccEEEEecCccccc-CcchHHHHHHHHhccCCCCcEEEEccCCC
Q psy3476 318 SSYDVLVLDEIHERHL-HGDFLLGVIKCLLHSTAEVKIILMSATIN 362 (1417)
Q Consensus 318 ~~~~~VIlDEaHER~l-~~d~ll~llk~l~~~r~~~qvIlmSATln 362 (1417)
.++++|+||.+. |.. +.+++..+.+......++..++++|||..
T Consensus 221 ~~~DvVLIDTaG-r~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g 265 (336)
T PRK14974 221 RGIDVVLIDTAG-RMHTDANLMDELKKIVRVTKPDLVIFVGDALAG 265 (336)
T ss_pred CCCCEEEEECCC-ccCCcHHHHHHHHHHHHhhCCceEEEeeccccc
Confidence 357899999998 543 44555555444444567888899999984
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.16 Score=61.25 Aligned_cols=46 Identities=11% Similarity=0.208 Sum_probs=28.6
Q ss_pred CccEEEEecCcccccCc-chHHHHHHHHhccCCCCcEEEEccCCCHHH
Q psy3476 319 SYDVLVLDEIHERHLHG-DFLLGVIKCLLHSTAEVKIILMSATINIEL 365 (1417)
Q Consensus 319 ~~~~VIlDEaHER~l~~-d~ll~llk~l~~~r~~~qvIlmSATln~~~ 365 (1417)
++++|+||-+= |+... ..+..+.+.+....++..++.+|||...++
T Consensus 320 ~~DvVLIDTaG-Rs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d 366 (436)
T PRK11889 320 RVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD 366 (436)
T ss_pred CCCEEEEeCcc-ccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHH
Confidence 57899999996 44433 334444444444445555677999985443
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.16 Score=58.97 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=17.7
Q ss_pred HHhcCCeEEEEcCCCcchhH
Q psy3476 50 TVLKERVVIIAGDTGCGKST 69 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt 69 (1417)
.+..++++++.||+|+|||.
T Consensus 102 ~~~~~~nlll~Gp~GtGKTH 121 (269)
T PRK08181 102 WLAKGANLLLFGPPGGGKSH 121 (269)
T ss_pred HHhcCceEEEEecCCCcHHH
Confidence 45678899999999999996
|
|
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.16 Score=67.08 Aligned_cols=60 Identities=20% Similarity=0.218 Sum_probs=42.7
Q ss_pred CCCcHHHHHHHHHHHhc-CCeEEEEcCCCcchhHHHHHHH--HHcCCCcEEEecchHHHHHHH
Q psy3476 37 SLPVAQYKQEIIDTVLK-ERVVIIAGDTGCGKSTQIPQYL--VQAGFQRIACTQPRRIACISL 96 (1417)
Q Consensus 37 ~lp~~~~q~~il~~i~~-~~~~iI~a~TGsGKTt~ipq~i--le~~~~~i~~tqPrr~aa~~~ 96 (1417)
...+..-|.+++..+.. +++++|.|+.|+||||.+-..+ ++....+|+.+.|+-.||..+
T Consensus 350 ~~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L 412 (744)
T TIGR02768 350 HYRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGL 412 (744)
T ss_pred cCCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHH
Confidence 35567889999998876 6899999999999998754322 233234577777776665544
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >KOG0391|consensus | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.17 Score=66.30 Aligned_cols=115 Identities=26% Similarity=0.295 Sum_probs=90.4
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCc--eEEEecchhhccCCcCCeE
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLR--KCIVSTNIAETSITIDGIR 500 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~r--kVLVATnIae~GIdIP~V~ 500 (1417)
.++..+|||.--..-.+-+-..|.- .++.-+-|.|....++|+...++|....+ ..|++|---..|||+-+.+
T Consensus 1274 ~eghRvLIfTQMtkmLDVLeqFLny-----HgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgAD 1348 (1958)
T KOG0391|consen 1274 SEGHRVLIFTQMTKMLDVLEQFLNY-----HGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGAD 1348 (1958)
T ss_pred hcCceEEehhHHHHHHHHHHHHHhh-----cceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCc
Confidence 4577999997655444444444433 67888899999999999999999987653 5789999999999999999
Q ss_pred EEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHH
Q psy3476 501 FVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS 557 (1417)
Q Consensus 501 ~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~ 557 (1417)
.||- ||..-+ |.=-+++.-|+-|.|++..=+.|||+++...+
T Consensus 1349 TVvF--------YDsDwN-------PtMDaQAQDrChRIGqtRDVHIYRLISe~TIE 1390 (1958)
T KOG0391|consen 1349 TVVF--------YDSDWN-------PTMDAQAQDRCHRIGQTRDVHIYRLISERTIE 1390 (1958)
T ss_pred eEEE--------ecCCCC-------chhhhHHHHHHHhhcCccceEEEEeeccchHH
Confidence 9996 886543 22346777788888888889999999987665
|
|
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.022 Score=61.30 Aligned_cols=121 Identities=19% Similarity=0.198 Sum_probs=72.8
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecc--hhhccCCcCC--e
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN--IAETSITIDG--I 499 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATn--Iae~GIdIP~--V 499 (1417)
.+|.+|||+|+.+..+.+.+.+...... .++.+..- ...++..+++.|+++.-.|++++. .+..|||+|+ .
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~-~~~~v~~q----~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~~~ 82 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEE-KGIPVFVQ----GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGDLL 82 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E--ETSCEEES----TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECESE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhccc-ccceeeec----CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCchh
Confidence 3689999999999999999988653211 12222222 245678888899999999999998 9999999996 6
Q ss_pred EEEEcCCcccceecccCC-------------CccccceeecCHhhHHhhcCcCCCCCC--CeEEEe
Q psy3476 500 RFVVDSGKVKEMSYDVTA-------------KMSTLQEFWISKASAEQRKGRAGRTGP--GVCYRL 550 (1417)
Q Consensus 500 ~~VIdsG~~k~~~yD~~~-------------~~~~l~~~~ISkasa~QR~GRAGR~g~--G~cy~L 550 (1417)
+.||-.|+.-...-|+.. ....+ ..+-.--...|-+||+=|... |..+.+
T Consensus 83 r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~a~~~l~Qa~GR~iR~~~D~g~i~ll 147 (167)
T PF13307_consen 83 RAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDW-YLPPAIRKLKQAIGRLIRSEDDYGVIILL 147 (167)
T ss_dssp EEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHH-THHHHHHHHHHHHHCC--STT-EEEEEEE
T ss_pred heeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhH-hhHHHHHHHhhhcCcceeccCCcEEEEEE
Confidence 777776764322222110 00111 112233457789999999884 655544
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.13 Score=66.32 Aligned_cols=39 Identities=28% Similarity=0.500 Sum_probs=27.9
Q ss_pred CCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 318 SSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 318 ~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
.+++++||||+| ++..+-...++|.+..-+++.++|+.+
T Consensus 118 gr~KVIIIDEah--~LT~~A~NALLKtLEEPP~~v~FILaT 156 (830)
T PRK07003 118 ARFKVYMIDEVH--MLTNHAFNAMLKTLEEPPPHVKFILAT 156 (830)
T ss_pred CCceEEEEeChh--hCCHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 468999999999 455555677888776655666666554
|
|
| >KOG1802|consensus | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.076 Score=65.98 Aligned_cols=64 Identities=20% Similarity=0.327 Sum_probs=54.0
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCcchhHH---HHHHHHHcCCCcEEEecchHHHHHHHHHHHHHH
Q psy3476 40 VAQYKQEIIDTVLKERVVIIAGDTGCGKSTQ---IPQYLVQAGFQRIACTQPRRIACISLSKRVAYE 103 (1417)
Q Consensus 40 ~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~---ipq~ile~~~~~i~~tqPrr~aa~~~a~rva~e 103 (1417)
+..-|..+...+.++...+|+||+|+|||.. |...+.+.....|+|..|..+|.-++|+.+-+.
T Consensus 411 LN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~t 477 (935)
T KOG1802|consen 411 LNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKT 477 (935)
T ss_pred hchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhc
Confidence 3578999999999999999999999999964 444455667789999999999999999887553
|
|
| >smart00488 DEXDc2 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.11 Score=61.03 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=27.6
Q ss_pred HHHHHH----HHHHHhcCCeEEEEcCCCcchhHHHHHHH
Q psy3476 41 AQYKQE----IIDTVLKERVVIIAGDTGCGKSTQIPQYL 75 (1417)
Q Consensus 41 ~~~q~~----il~~i~~~~~~iI~a~TGsGKTt~ipq~i 75 (1417)
++.|.+ +.+.+.+++.+++.||||+|||..+....
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~a 48 (289)
T smart00488 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLT 48 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHH
Confidence 555665 77778899999999999999997655433
|
|
| >smart00489 DEXDc3 DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.11 Score=61.03 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=27.6
Q ss_pred HHHHHH----HHHHHhcCCeEEEEcCCCcchhHHHHHHH
Q psy3476 41 AQYKQE----IIDTVLKERVVIIAGDTGCGKSTQIPQYL 75 (1417)
Q Consensus 41 ~~~q~~----il~~i~~~~~~iI~a~TGsGKTt~ipq~i 75 (1417)
++.|.+ +.+.+.+++.+++.||||+|||..+....
T Consensus 10 r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~a 48 (289)
T smart00489 10 YPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLT 48 (289)
T ss_pred CHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHH
Confidence 555665 77778899999999999999997655433
|
|
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.14 Score=61.77 Aligned_cols=17 Identities=35% Similarity=0.739 Sum_probs=14.4
Q ss_pred CeEEEEcCCCcchhHHH
Q psy3476 55 RVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~i 71 (1417)
++++|.|..|||||..+
T Consensus 2 ~v~~I~G~aGTGKTvla 18 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLA 18 (352)
T ss_pred eEEEEEecCCcCHHHHH
Confidence 57899999999999643
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.3 Score=58.31 Aligned_cols=54 Identities=17% Similarity=0.340 Sum_probs=30.0
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccC-CCCcEEEEccCCCHHHHHHHh
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHST-AEVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r-~~~qvIlmSATln~~~~~~~f 370 (1417)
.+.+++++|||+++ ....+++....+..+...+ ..-+-+++|..++++.+.+.+
T Consensus 243 ~l~~~DLLIIDDlG-~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~ 297 (329)
T PRK06835 243 LLINCDLLIIDDLG-TEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTY 297 (329)
T ss_pred HhccCCEEEEeccC-CCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHH
Confidence 35578999999998 2233344433333333322 222345666667666665544
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.25 Score=62.21 Aligned_cols=48 Identities=19% Similarity=0.365 Sum_probs=28.9
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHH
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELF 366 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~ 366 (1417)
+...+++++||||+| .+...-...+++.+...++...+|+ +|-+.+.+
T Consensus 124 P~~~~~KVvIIDEa~--~Ls~~a~naLLk~LEepp~~~vfI~--aTte~~kI 171 (507)
T PRK06645 124 PLQGKHKIFIIDEVH--MLSKGAFNALLKTLEEPPPHIIFIF--ATTEVQKI 171 (507)
T ss_pred cccCCcEEEEEEChh--hcCHHHHHHHHHHHhhcCCCEEEEE--EeCChHHh
Confidence 556789999999999 4444555566666654434433333 34344433
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.17 Score=66.60 Aligned_cols=44 Identities=25% Similarity=0.414 Sum_probs=31.8
Q ss_pred CCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHH
Q psy3476 318 SSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIEL 365 (1417)
Q Consensus 318 ~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~ 365 (1417)
..++++|||||| .+..+....++|.+..-+..+++|+. |-+...
T Consensus 118 gk~KViIIDEAh--~LT~eAqNALLKtLEEPP~~vrFILa--TTe~~k 161 (944)
T PRK14949 118 GRFKVYLIDEVH--MLSRSSFNALLKTLEEPPEHVKFLLA--TTDPQK 161 (944)
T ss_pred CCcEEEEEechH--hcCHHHHHHHHHHHhccCCCeEEEEE--CCCchh
Confidence 468899999999 55667778888888776666666664 544333
|
|
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.35 Score=65.17 Aligned_cols=61 Identities=18% Similarity=0.195 Sum_probs=43.4
Q ss_pred cCCCcHHHHHHHHHHHhc-CCeEEEEcCCCcchhHHHHHH--HHHcCCCcEEEecchHHHHHHH
Q psy3476 36 NSLPVAQYKQEIIDTVLK-ERVVIIAGDTGCGKSTQIPQY--LVQAGFQRIACTQPRRIACISL 96 (1417)
Q Consensus 36 ~~lp~~~~q~~il~~i~~-~~~~iI~a~TGsGKTt~ipq~--ile~~~~~i~~tqPrr~aa~~~ 96 (1417)
..+.+..-|.+++..+.. +++++|+|..|+||||.+-.. +++..-.+|+.+.|+-.||..+
T Consensus 343 ~g~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L 406 (988)
T PRK13889 343 RGLVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENL 406 (988)
T ss_pred cCCCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHH
Confidence 456778889999988776 568999999999999964321 2333334677777876665444
|
|
| >PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.77 Score=61.21 Aligned_cols=46 Identities=17% Similarity=0.084 Sum_probs=33.6
Q ss_pred CceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC
Q psy3476 480 LRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG 543 (1417)
Q Consensus 480 ~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g 543 (1417)
.++.|++-+.+..|-|-|++-++.- .... -|.-+..|-+||.-|..
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~--------l~~~----------~s~~~~~q~~gr~lr~~ 546 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAK--------LRSS----------GSETSKLQEVGRGLRLP 546 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEE--------eccC----------CchHHHHHHhccceecc
Confidence 6899999999999999998766553 2211 13345569999998864
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.023 Score=75.06 Aligned_cols=119 Identities=19% Similarity=0.227 Sum_probs=81.2
Q ss_pred hhhhhHHHhhhccccccCC---CcccccccHH-----HHhhhhcCCccchhh------cchHHHHHHHHHhcCC----Cc
Q psy3476 794 IEEEEEEEEGERLESRTGP---GVCYRLYSEE-----QYSLLAEYSTPEIRR------VSIDSLLLSLVCMGLG----DV 855 (1417)
Q Consensus 794 ~~s~~~~~qR~~~agR~~p---G~CyRLyt~~-----~~~~l~~~~~PEI~r------~~L~~~vL~lk~~g~~----~~ 855 (1417)
..+.++-.||.|||||-+- |.||=++... .|+.+-.. .||=.. ..|...+|...+.|.- ++
T Consensus 366 ~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~l~~-~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~ 444 (737)
T PRK02362 366 PIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDELDELFERYIWA-DPEDVRSKLATEPALRTHVLSTIASGFARTRDGL 444 (737)
T ss_pred eCCHHHHHHHhhcCCCCCCCCCceEEEEecCchhHHHHHHHHHhC-CCCceeecCCChhhHHHHHHHHHHhCccCCHHHH
Confidence 3678889999999999763 8999888653 13333321 222121 2355666776666632 22
Q ss_pred ccC---CCCCCCCc------cchHHHHHHHhhccccccccc---cchhhhhcccCCCCccccchhhhccc
Q psy3476 856 RKF---PFLEAPPA------ENIESSVRSLTQHGAIDSKER---VTTLGRFLSDLPVDIPLGKMLVFGSM 913 (1417)
Q Consensus 856 ~~f---~~l~~P~~------~~l~~A~~~L~~lgald~~~~---lT~lG~~l~~lPvdp~lak~Ll~~~~ 913 (1417)
..| .|+-.+.. +.+..+++.|...|+|+.++. .|++|+.++.++++|.-+..+..+..
T Consensus 445 ~~~l~~Tf~~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~~t~lG~~~s~~~l~~~t~~~~~~~l~ 514 (737)
T PRK02362 445 LEFLEATFYATQTDDTGRLERVVDDVLDFLERNGMIEEDGETLEATELGHLVSRLYIDPLSAAEIIDGLE 514 (737)
T ss_pred HHHHHhChHHhhccchHHHHHHHHHHHHHHHHCCCeeecCCeEeEChHHHHHHHhcCCHHHHHHHHHHhh
Confidence 222 44444433 348899999999999987654 79999999999999999998876643
|
|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=93.72 E-value=4.1 Score=59.42 Aligned_cols=62 Identities=16% Similarity=0.270 Sum_probs=44.1
Q ss_pred CCCcHHHHHHHHHHHhcC--CeEEEEcCCCcchhHHHHHH--HHHcCCCcEEEecchHHHHHHHHH
Q psy3476 37 SLPVAQYKQEIIDTVLKE--RVVIIAGDTGCGKSTQIPQY--LVQAGFQRIACTQPRRIACISLSK 98 (1417)
Q Consensus 37 ~lp~~~~q~~il~~i~~~--~~~iI~a~TGsGKTt~ipq~--ile~~~~~i~~tqPrr~aa~~~a~ 98 (1417)
.+++..-|.+.+..+..+ ++.+|.|+.|+||||.+-.. +++..-.+|.+..|+.-||..+++
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~L~e 492 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELRQ 492 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHH
Confidence 456777888888887664 79999999999999864332 334333467777788766655543
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >KOG2340|consensus | Back alignment and domain information |
|---|
Probab=93.68 E-value=1.9 Score=53.05 Aligned_cols=116 Identities=14% Similarity=0.147 Sum_probs=80.1
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhh--ccCCcCCeEEE
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAE--TSITIDGIRFV 502 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae--~GIdIP~V~~V 502 (1417)
...+||+.|+.=+-.++-..+++ ..+....+|--.+...-.+.-+.|-.|..+|++-|.-+- +--+|.+|+-|
T Consensus 552 ~s~~LiyIPSYfDFVRvRNy~K~-----e~i~F~~i~EYssk~~vsRAR~lF~qgr~~vlLyTER~hffrR~~ikGVk~v 626 (698)
T KOG2340|consen 552 ESGILIYIPSYFDFVRVRNYMKK-----EEISFVMINEYSSKSKVSRARELFFQGRKSVLLYTERAHFFRRYHIKGVKNV 626 (698)
T ss_pred cCceEEEecchhhHHHHHHHhhh-----hhcchHHHhhhhhHhhhhHHHHHHHhcCceEEEEehhhhhhhhheecceeeE
Confidence 45799999999998888888765 233333333333333333444557788899999996543 56788999999
Q ss_pred EcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-----CCeEEEecCHHHHHHhh
Q psy3476 503 VDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-----PGVCYRLYSEEQYSLLA 560 (1417)
Q Consensus 503 IdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-----~G~cy~L~t~~~~~~l~ 560 (1417)
|- |.+|+...-|. +...+.+|+.-.| .-.|-.||++-+--.+.
T Consensus 627 Vf--------YqpP~~P~FYs-------Eiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~Le 674 (698)
T KOG2340|consen 627 VF--------YQPPNNPHFYS-------EIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRLE 674 (698)
T ss_pred EE--------ecCCCCcHHHH-------HHHhhhhhhhccCCccccceEEEEEeechhhHHHH
Confidence 98 99998766553 6668888774443 24688899987765544
|
|
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.31 Score=58.80 Aligned_cols=52 Identities=10% Similarity=0.121 Sum_probs=31.9
Q ss_pred CCccEEEEecCccccc-CcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHh
Q psy3476 318 SSYDVLVLDEIHERHL-HGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 318 ~~~~~VIlDEaHER~l-~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f 370 (1417)
.++++|+||=+= |+. +.+.+..+.+......++.-++.+|||....++.+.+
T Consensus 284 ~~~D~VLIDTAG-r~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~ 336 (407)
T PRK12726 284 NCVDHILIDTVG-RNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTIL 336 (407)
T ss_pred CCCCEEEEECCC-CCccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHH
Confidence 468999999986 433 3333333333333344556677889988766665554
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.071 Score=54.01 Aligned_cols=55 Identities=20% Similarity=0.223 Sum_probs=34.5
Q ss_pred hcCCeEEEEcCCCcchhHHHHHHHHHc--------CCCcEEEecchHHHHHHHHHHHHHHHcc
Q psy3476 52 LKERVVIIAGDTGCGKSTQIPQYLVQA--------GFQRIACTQPRRIACISLSKRVAYETLS 106 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ipq~ile~--------~~~~i~~tqPrr~aa~~~a~rva~e~~~ 106 (1417)
++++.++|.|++|||||+.+-+++.+. ...-+.+..|.......++..++.+++.
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 64 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGL 64 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCc
Confidence 456789999999999999988877654 3334666666655556667777776643
|
|
| >PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.79 Score=53.04 Aligned_cols=100 Identities=17% Similarity=0.087 Sum_probs=51.8
Q ss_pred cCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHH--HHHcCCCcEEEecchHHHHHHHHHHHHHHHc---cccCC
Q psy3476 36 NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQY--LVQAGFQRIACTQPRRIACISLSKRVAYETL---SQYSN 110 (1417)
Q Consensus 36 ~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~--ile~~~~~i~~tqPrr~aa~~~a~rva~e~~---~~~g~ 110 (1417)
+.+-...+--+++..+.-++--|+...||-|||..+... +....-..+-|.-... -+|+|=+++++ ..+|-
T Consensus 72 r~~g~~p~~vQll~~l~L~~G~laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~Nd----yLA~RD~~~~~~~y~~LGl 147 (266)
T PF07517_consen 72 RTLGLRPYDVQLLGALALHKGRLAEMKTGEGKTLIAALPAALNALQGKGVHVVTSND----YLAKRDAEEMRPFYEFLGL 147 (266)
T ss_dssp HHTS----HHHHHHHHHHHTTSEEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSH----HHHHHHHHHHHHHHHHTT-
T ss_pred HHcCCcccHHHHhhhhhcccceeEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccH----HHhhccHHHHHHHHHHhhh
Confidence 445555555666655544444499999999999764433 3222222332222222 23444444443 46789
Q ss_pred eEEEEEeecccc----cCCccEEEEccchhHHh
Q psy3476 111 LVGYQIRFEKHR----REKTKIVFITEGLLLRQ 139 (1417)
Q Consensus 111 ~vGy~ir~e~~~----~~~t~I~~~T~g~llr~ 139 (1417)
+||+........ .-...|+|+|.+-+---
T Consensus 148 sv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD 180 (266)
T PF07517_consen 148 SVGIITSDMSSEERREAYAADIVYGTNSEFGFD 180 (266)
T ss_dssp -EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHH
T ss_pred ccccCccccCHHHHHHHHhCcccccccchhhHH
Confidence 999866543211 12457999999876643
|
SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A .... |
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.24 Score=63.87 Aligned_cols=42 Identities=29% Similarity=0.448 Sum_probs=29.6
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
+.+.+++++||||+| .+.......+++.+...+...++|+.+
T Consensus 115 P~~gk~KVIIIDEad--~Ls~~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 115 PTAGKYKVYIIDEVH--MLSKSAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hhhCCcEEEEEECcc--ccCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 345678999999999 455555667777777666667666654
|
|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=93.54 E-value=0.38 Score=63.94 Aligned_cols=41 Identities=20% Similarity=0.353 Sum_probs=30.6
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
....++++||||+| .+..+-...++|.+......+.+|+.+
T Consensus 117 ~~~~~KV~IIDEad--~lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 117 AESRYKIFIIDEAH--MVTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred hcCCceEEEEechh--hcCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 34678999999999 455666777888887766677777654
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=93.37 E-value=0.16 Score=63.45 Aligned_cols=42 Identities=29% Similarity=0.479 Sum_probs=30.0
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
+...+++++||||+| .+..+-...+++.+..-++...+|+.+
T Consensus 112 P~~~~~KVvIIDEah--~Ls~~A~NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 112 PISSKFKVYIIDEVH--MLSNSAFNALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred cccCCceEEEEeChH--hCCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 556789999999999 555555667777776656666666543
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.16 Score=65.45 Aligned_cols=39 Identities=26% Similarity=0.438 Sum_probs=28.9
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEE
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILM 357 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlm 357 (1417)
-..++++||||+| .+..+-...++|.+..-++..++|+.
T Consensus 117 ~g~~KV~IIDEah--~Ls~~a~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 117 RGRFKVYLIDEVH--MLSRHSFNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred cCCCEEEEEechH--hCCHHHHHHHHHHHHcCCCCeEEEEe
Confidence 3578999999999 55666677888877765566666664
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=93.12 E-value=0.55 Score=53.72 Aligned_cols=54 Identities=22% Similarity=0.295 Sum_probs=34.0
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccC-CCCcEEEEccCCCHHHHHHHhc
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHST-AEVKIILMSATINIELFHTYFN 371 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r-~~~qvIlmSATln~~~~~~~f~ 371 (1417)
+.+++++||||++... .+++...++..+...| .+.+-++++.-++.+.+.+.++
T Consensus 160 l~~~dlLvIDDig~~~-~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~~~~l~~~~g 214 (244)
T PRK07952 160 LSNVDLLVIDEIGVQT-ESRYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLG 214 (244)
T ss_pred hccCCEEEEeCCCCCC-CCHHHHHHHHHHHHHHHhCCCCEEEeCCCCHHHHHHHhC
Confidence 5578999999999332 4556655655554443 2234455555667777777663
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=93.03 E-value=0.45 Score=59.65 Aligned_cols=52 Identities=12% Similarity=0.215 Sum_probs=30.3
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHH
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~ 369 (1417)
+.++++||||.+- ++.....+...+..+........+++++++....++.+.
T Consensus 426 l~~~DLVLIDTaG-~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~ei 477 (559)
T PRK12727 426 LRDYKLVLIDTAG-MGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEV 477 (559)
T ss_pred hccCCEEEecCCC-cchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHHHH
Confidence 4568999999996 433222222223333333345678889999865544443
|
|
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.29 Score=53.23 Aligned_cols=22 Identities=23% Similarity=0.475 Sum_probs=15.9
Q ss_pred HHHHhcCCeEEEEcCCCcchhH
Q psy3476 48 IDTVLKERVVIIAGDTGCGKST 69 (1417)
Q Consensus 48 l~~i~~~~~~iI~a~TGsGKTt 69 (1417)
.+.+.+++++++.|+||+|||.
T Consensus 41 ~~~~~~~~~l~l~G~~G~GKTh 62 (178)
T PF01695_consen 41 LEFIENGENLILYGPPGTGKTH 62 (178)
T ss_dssp H-S-SC--EEEEEESTTSSHHH
T ss_pred CCCcccCeEEEEEhhHhHHHHH
Confidence 4455678899999999999996
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.27 Score=55.61 Aligned_cols=50 Identities=16% Similarity=0.268 Sum_probs=27.0
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccCC-CCcEEEEccCCCHHHH
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTA-EVKIILMSATINIELF 366 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~-~~qvIlmSATln~~~~ 366 (1417)
+.+++++||||+|....+.+....+...+..... ..+++++|++..+..+
T Consensus 89 ~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l 139 (229)
T PRK06893 89 LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHAL 139 (229)
T ss_pred cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHc
Confidence 4467899999999322222222233333332222 3456788888755443
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.2 Score=62.22 Aligned_cols=41 Identities=29% Similarity=0.510 Sum_probs=27.7
Q ss_pred CCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCC
Q psy3476 318 SSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATIN 362 (1417)
Q Consensus 318 ~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln 362 (1417)
..+.++|||||| .+..+....+++.+..-+. +++++-||-+
T Consensus 120 g~~KV~IIDEah--~Ls~~A~NALLKtLEEPp~--~viFILaTte 160 (484)
T PRK14956 120 GKYKVYIIDEVH--MLTDQSFNALLKTLEEPPA--HIVFILATTE 160 (484)
T ss_pred CCCEEEEEechh--hcCHHHHHHHHHHhhcCCC--ceEEEeecCC
Confidence 468899999999 5666777788887755333 4444445543
|
|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=92.87 E-value=0.43 Score=59.72 Aligned_cols=48 Identities=25% Similarity=0.457 Sum_probs=26.6
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHH
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELF 366 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~ 366 (1417)
+...++.+|||||+| .+..+....+++.+...++. +++.-||-+...+
T Consensus 113 p~~~~~kVvIIDE~h--~Lt~~a~~~LLk~LE~p~~~--vv~Ilattn~~kl 160 (472)
T PRK14962 113 PMEGKYKVYIIDEVH--MLTKEAFNALLKTLEEPPSH--VVFVLATTNLEKV 160 (472)
T ss_pred hhcCCeEEEEEEChH--HhHHHHHHHHHHHHHhCCCc--EEEEEEeCChHhh
Confidence 445678899999999 33344444555555443333 3333334354444
|
|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=92.81 E-value=6.8 Score=48.52 Aligned_cols=73 Identities=15% Similarity=0.249 Sum_probs=57.7
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecc------hhhccCCcCC
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN------IAETSITIDG 498 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATn------Iae~GIdIP~ 498 (1417)
+|++|+-.||+--+.+-++.+.+... .+.-.+..|.|..++++|..... +.+|+|||+ +.+-=+|+.+
T Consensus 58 ~~kvlfLAPTKPLV~Qh~~~~~~v~~-ip~~~i~~ltGev~p~~R~~~w~-----~~kVfvaTPQvveNDl~~Grid~~d 131 (542)
T COG1111 58 GGKVLFLAPTKPLVLQHAEFCRKVTG-IPEDEIAALTGEVRPEEREELWA-----KKKVFVATPQVVENDLKAGRIDLDD 131 (542)
T ss_pred CCeEEEecCCchHHHHHHHHHHHHhC-CChhheeeecCCCChHHHHHHHh-----hCCEEEeccHHHHhHHhcCccChHH
Confidence 55788889999988888888876432 24457899999999999998886 358999995 4444588999
Q ss_pred eEEEE
Q psy3476 499 IRFVV 503 (1417)
Q Consensus 499 V~~VI 503 (1417)
+.++|
T Consensus 132 v~~li 136 (542)
T COG1111 132 VSLLI 136 (542)
T ss_pred ceEEE
Confidence 98887
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=92.79 E-value=0.73 Score=60.29 Aligned_cols=50 Identities=12% Similarity=0.183 Sum_probs=32.3
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHh-ccCCCCcEEEEccCCCHHHHH
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLL-HSTAEVKIILMSATINIELFH 367 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~-~~r~~~qvIlmSATln~~~~~ 367 (1417)
+.++++|+||=+= |+....-+...+..+. ...+.-.++++|||...+.+.
T Consensus 261 ~~~~D~VLIDTAG-Rs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~ 311 (767)
T PRK14723 261 LGDKHLVLIDTVG-MSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLN 311 (767)
T ss_pred hcCCCEEEEeCCC-CCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHH
Confidence 4567899999997 5554433444444443 345666788899998655444
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.38 Score=61.63 Aligned_cols=40 Identities=23% Similarity=0.427 Sum_probs=27.9
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
..+++++||||+| .+.......+++.+...++...+|+.+
T Consensus 116 ~gk~KV~IIDEVh--~LS~~A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 116 QGRFKVYLIDEVH--MLSTHSFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred cCCcEEEEEechH--hcCHHHHHHHHHHHhcCCCCcEEEEEE
Confidence 3568999999999 555555667777776655566666543
|
|
| >KOG0389|consensus | Back alignment and domain information |
|---|
Probab=92.71 E-value=0.55 Score=60.00 Aligned_cols=114 Identities=19% Similarity=0.234 Sum_probs=86.2
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCC--ceEEEecchhhccCCcCCeEE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGL--RKCIVSTNIAETSITIDGIRF 501 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~--rkVLVATnIae~GIdIP~V~~ 501 (1417)
.+.+||+|----.-.+-+-..|.. .++....|.|.....+|+.+++.|...+ .-+|++|-...-|||+-+.++
T Consensus 776 ~G~RVLiFSQFTqmLDILE~~L~~-----l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~ 850 (941)
T KOG0389|consen 776 KGDRVLIFSQFTQMLDILEVVLDT-----LGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANT 850 (941)
T ss_pred cCCEEEEeeHHHHHHHHHHHHHHh-----cCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccce
Confidence 457899996544333333333433 6788999999999999999999998654 457899999999999999999
Q ss_pred EEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHH
Q psy3476 502 VVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS 557 (1417)
Q Consensus 502 VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~ 557 (1417)
||- ||...+. -.--+|.-|+-|.|-+.|=.+|+|+++...+
T Consensus 851 VIi--------hD~dFNP-------~dD~QAEDRcHRvGQtkpVtV~rLItk~TIE 891 (941)
T KOG0389|consen 851 VII--------HDIDFNP-------YDDKQAEDRCHRVGQTKPVTVYRLITKSTIE 891 (941)
T ss_pred EEE--------eecCCCC-------cccchhHHHHHhhCCcceeEEEEEEecCcHH
Confidence 986 6654432 2234566777777777799999999988765
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=92.66 E-value=1 Score=50.61 Aligned_cols=18 Identities=28% Similarity=0.591 Sum_probs=15.5
Q ss_pred cCCeEEEEcCCCcchhHH
Q psy3476 53 KERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ 70 (1417)
.+..+++.|++|||||+.
T Consensus 41 ~~~~~~l~G~~G~GKT~L 58 (227)
T PRK08903 41 ADRFFYLWGEAGSGRSHL 58 (227)
T ss_pred CCCeEEEECCCCCCHHHH
Confidence 456899999999999973
|
|
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.63 Score=54.04 Aligned_cols=15 Identities=27% Similarity=0.470 Sum_probs=13.4
Q ss_pred CeEEEEcCCCcchhH
Q psy3476 55 RVVIIAGDTGCGKST 69 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt 69 (1417)
..+++.|++|+|||.
T Consensus 115 ~gl~l~G~~GtGKTh 129 (268)
T PRK08116 115 VGLLLWGSVGTGKTY 129 (268)
T ss_pred ceEEEECCCCCCHHH
Confidence 458999999999996
|
|
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.15 Score=58.91 Aligned_cols=31 Identities=29% Similarity=0.459 Sum_probs=23.6
Q ss_pred HHHHHhcCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 47 IIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 47 il~~i~~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
+...++.+.+++|+|+|||||||++-.++..
T Consensus 120 l~~~v~~~~~ili~G~tGSGKTT~l~all~~ 150 (270)
T PF00437_consen 120 LRSAVRGRGNILISGPTGSGKTTLLNALLEE 150 (270)
T ss_dssp HHHCHHTTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred HhhccccceEEEEECCCccccchHHHHHhhh
Confidence 3344567899999999999999987555443
|
These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B .... |
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.55 Score=58.58 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=13.3
Q ss_pred CeEEEEcCCCcchhH
Q psy3476 55 RVVIIAGDTGCGKST 69 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt 69 (1417)
..++|.||+|+|||+
T Consensus 149 ~~l~l~G~~G~GKTh 163 (450)
T PRK00149 149 NPLFIYGGVGLGKTH 163 (450)
T ss_pred CeEEEECCCCCCHHH
Confidence 458999999999996
|
|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.44 Score=61.00 Aligned_cols=42 Identities=17% Similarity=0.286 Sum_probs=30.9
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
+....++++||||+| .+..+-...+++.+..-++...+|+.+
T Consensus 114 P~~~~~KVvIIDEah--~Lt~~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 114 PAQSRYRIFIVDEAH--MVTTAGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred hhcCCceEEEEECCC--cCCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 445689999999999 556666777788877666666666644
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=92.32 E-value=0.28 Score=62.65 Aligned_cols=40 Identities=28% Similarity=0.469 Sum_probs=29.5
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
..+++++||||+| .++..-...++|.+..-+.+.++|+.|
T Consensus 122 ~gr~KViIIDEah--~Ls~~AaNALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 122 AGRFKVYMIDEVH--MLTNHAFNAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred cCCceEEEEEChH--hcCHHHHHHHHHhhccCCCCceEEEEe
Confidence 4578999999999 455566678888776656667666654
|
|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=92.27 E-value=0.5 Score=59.98 Aligned_cols=42 Identities=29% Similarity=0.403 Sum_probs=29.0
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
+...+++++||||+| .+..+....+++.+..-+....+|+.+
T Consensus 115 p~~g~~kViIIDEa~--~ls~~a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 115 PSQGRYKVYLIDEVH--MLSKQSFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred hhcCCcEEEEEechh--hccHHHHHHHHHHHhcCCCCceEEEEE
Confidence 345678999999999 345556667777776655566666644
|
|
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=92.22 E-value=0.72 Score=52.37 Aligned_cols=17 Identities=24% Similarity=0.477 Sum_probs=14.3
Q ss_pred CCeEEEEcCCCcchhHH
Q psy3476 54 ERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ 70 (1417)
...+++.|++|||||+.
T Consensus 41 ~~~l~l~G~~G~GKThL 57 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHL 57 (233)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 34689999999999963
|
|
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.28 Score=57.90 Aligned_cols=46 Identities=22% Similarity=0.419 Sum_probs=30.8
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc----CCCcEEEecch
Q psy3476 44 KQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA----GFQRIACTQPR 89 (1417)
Q Consensus 44 q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~----~~~~i~~tqPr 89 (1417)
.+.+..+++.+.+++|+|+|||||||.+-..+-.- ...+|++..-.
T Consensus 122 ~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~ 171 (299)
T TIGR02782 122 RDVLREAVLARKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDT 171 (299)
T ss_pred HHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCc
Confidence 34455677888999999999999999754433221 13466665544
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.34 Score=55.04 Aligned_cols=48 Identities=15% Similarity=0.246 Sum_probs=27.1
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHH
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIE 364 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~ 364 (1417)
+.+++++|||++|.-.........+...+...+..-+.+++++|..+.
T Consensus 95 ~~~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~ 142 (234)
T PRK05642 95 LEQYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPR 142 (234)
T ss_pred hhhCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHH
Confidence 445688999999922222233334444444444444667888877544
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=92.02 E-value=1.5 Score=57.00 Aligned_cols=35 Identities=23% Similarity=0.516 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHhcC---CeEEEEcCCCcchhHHHHHHH
Q psy3476 41 AQYKQEIIDTVLKE---RVVIIAGDTGCGKSTQIPQYL 75 (1417)
Q Consensus 41 ~~~q~~il~~i~~~---~~~iI~a~TGsGKTt~ipq~i 75 (1417)
+..+..+++.+..+ +.++|++|-|+||||.+.||.
T Consensus 21 ~v~R~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~ 58 (894)
T COG2909 21 YVVRPRLLDRLRRANDYRLILISAPAGFGKTTLLAQWR 58 (894)
T ss_pred ccccHHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHH
Confidence 44566777777654 799999999999999888775
|
|
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=91.99 E-value=1.1 Score=60.82 Aligned_cols=61 Identities=20% Similarity=0.236 Sum_probs=42.8
Q ss_pred cCCCcHHHHHHHHHHHh-cCCeEEEEcCCCcchhHHHHHH--HHHcCCCcEEEecchHHHHHHH
Q psy3476 36 NSLPVAQYKQEIIDTVL-KERVVIIAGDTGCGKSTQIPQY--LVQAGFQRIACTQPRRIACISL 96 (1417)
Q Consensus 36 ~~lp~~~~q~~il~~i~-~~~~~iI~a~TGsGKTt~ipq~--ile~~~~~i~~tqPrr~aa~~~ 96 (1417)
....+..-|.+++..+. .+++++|+|+-|+||||.+-.. +++....+|+...|+--||..+
T Consensus 378 ~~~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~~L 441 (1102)
T PRK13826 378 RHARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAEGL 441 (1102)
T ss_pred cCCCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHHHH
Confidence 34667888999998774 5789999999999999965432 2333334666667776555444
|
|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=91.83 E-value=1.4 Score=54.86 Aligned_cols=14 Identities=36% Similarity=0.610 Sum_probs=13.0
Q ss_pred eEEEEcCCCcchhH
Q psy3476 56 VVIIAGDTGCGKST 69 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt 69 (1417)
.++|.||+|+|||+
T Consensus 132 ~l~lyG~~G~GKTH 145 (440)
T PRK14088 132 PLFIYGGVGLGKTH 145 (440)
T ss_pred eEEEEcCCCCcHHH
Confidence 58999999999996
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.78 E-value=0.55 Score=56.92 Aligned_cols=42 Identities=26% Similarity=0.410 Sum_probs=27.2
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
+...+++++||||+| .+..+....+++.+...++..++|+.+
T Consensus 115 p~~~~~kviIIDEa~--~l~~~a~naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 115 PSKSRFKVYLIDEVH--MLSRHSFNALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred cccCCceEEEEEChh--hcCHHHHHHHHHHHhcCCCCeEEEEEc
Confidence 344578899999999 344444556677666555566666543
|
|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Probab=91.78 E-value=1.6 Score=51.78 Aligned_cols=54 Identities=15% Similarity=0.215 Sum_probs=31.4
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccC-CCCcEEEEccCCCHHHHHHHh
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHST-AEVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r-~~~qvIlmSATln~~~~~~~f 370 (1417)
+.+++++||||+.--.........++..+...| ...+-.++|.-++.+.+.+.|
T Consensus 215 l~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl~~~el~~~~ 269 (306)
T PRK08939 215 VKEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNFDFDELEHHL 269 (306)
T ss_pred hcCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHH
Confidence 567899999999832222222224444443322 233445556567778887777
|
|
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=91.70 E-value=1.1 Score=55.00 Aligned_cols=52 Identities=15% Similarity=0.220 Sum_probs=32.0
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccC-CCCcEEEEccCCCHHHHHHH
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHST-AEVKIILMSATINIELFHTY 369 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r-~~~qvIlmSATln~~~~~~~ 369 (1417)
+.++++++||.+= |.-....+..-++.+.... +.-.++++|||...+.+.+.
T Consensus 267 l~~~d~VLIDTaG-rsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~ 319 (420)
T PRK14721 267 LRGKHMVLIDTVG-MSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV 319 (420)
T ss_pred hcCCCEEEecCCC-CCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH
Confidence 5678899999974 5544333444455554433 34456779999965555443
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.62 E-value=0.51 Score=59.66 Aligned_cols=40 Identities=30% Similarity=0.522 Sum_probs=29.1
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
-.+++++||||+| ++..+....+++.+..-++...+|+.+
T Consensus 117 ~~~~kV~iIDE~~--~ls~~a~naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 117 KGRFKVYLIDEVH--MLSGHSFNALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred cCCcEEEEEEChH--hcCHHHHHHHHHHHhccCCCeEEEEEE
Confidence 3478999999999 555666677888777666666666643
|
|
| >PRK13833 conjugal transfer protein TrbB; Provisional | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.31 Score=57.91 Aligned_cols=27 Identities=30% Similarity=0.417 Sum_probs=22.4
Q ss_pred HHHHHHhcCCeEEEEcCCCcchhHHHH
Q psy3476 46 EIIDTVLKERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 46 ~il~~i~~~~~~iI~a~TGsGKTt~ip 72 (1417)
.+..++..+.+++|+|+|||||||.+-
T Consensus 136 ~L~~~v~~~~nilI~G~tGSGKTTll~ 162 (323)
T PRK13833 136 VIRSAIDSRLNIVISGGTGSGKTTLAN 162 (323)
T ss_pred HHHHHHHcCCeEEEECCCCCCHHHHHH
Confidence 355677788899999999999999753
|
|
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.18 Score=45.22 Aligned_cols=18 Identities=44% Similarity=0.713 Sum_probs=15.9
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
+++++|.|++||||||.+
T Consensus 23 g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 23 GDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 458999999999999974
|
|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.25 Score=61.00 Aligned_cols=41 Identities=22% Similarity=0.433 Sum_probs=28.0
Q ss_pred CCcHHHHHHHHHHHh--cCCeEEEEcCCCcchhHHHHHHHHHc
Q psy3476 38 LPVAQYKQEIIDTVL--KERVVIIAGDTGCGKSTQIPQYLVQA 78 (1417)
Q Consensus 38 lp~~~~q~~il~~i~--~~~~~iI~a~TGsGKTt~ipq~ile~ 78 (1417)
|.....+.+.+..+. .+..++++|||||||||..-.++-+.
T Consensus 240 Lg~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~l 282 (500)
T COG2804 240 LGMSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSEL 282 (500)
T ss_pred hCCCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 444555555554443 35688999999999999776665543
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=91.37 E-value=0.44 Score=57.41 Aligned_cols=41 Identities=17% Similarity=0.289 Sum_probs=30.1
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
.-..+.++|||||| .++..-...+++.+..-+....+|++|
T Consensus 138 ~~g~~rVviIDeAd--~l~~~aanaLLk~LEEpp~~~~fiLit 178 (351)
T PRK09112 138 GDGNWRIVIIDPAD--DMNRNAANAILKTLEEPPARALFILIS 178 (351)
T ss_pred ccCCceEEEEEchh--hcCHHHHHHHHHHHhcCCCCceEEEEE
Confidence 34578899999999 455666778888887755566666665
|
|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.24 E-value=0.6 Score=60.07 Aligned_cols=42 Identities=21% Similarity=0.406 Sum_probs=28.9
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
+....++++||||+| .+..+-...+++.+..-+....+|+.+
T Consensus 120 p~~g~~KV~IIDEvh--~Ls~~a~NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 120 PVQGRFKVFMIDEVH--MLTNTAFNAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred cccCCceEEEEEChh--hCCHHHHHHHHHhcccCCCCeEEEEEE
Confidence 334578999999999 455555667777766655556666544
|
|
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=91.22 E-value=0.97 Score=57.51 Aligned_cols=42 Identities=26% Similarity=0.416 Sum_probs=29.5
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
+...+++++||||+| .+...-...+++.+...+....+|+.+
T Consensus 115 p~~~~~kVvIIDEad--~ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 115 PTRGRFKVYIIDEVH--MLSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred cccCCceEEEEcCcc--cCCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 445678999999999 444455667778777766666666654
|
|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=91.20 E-value=0.91 Score=58.43 Aligned_cols=42 Identities=26% Similarity=0.444 Sum_probs=30.4
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
+.+..+++|||||+| .+...-...+++.+..-++...+|+.+
T Consensus 128 P~~a~~KVvIIDEad--~Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 128 PVSARYKVYIIDEVH--MLSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred hhcCCcEEEEEEChH--hCCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 556789999999999 445555667777776666677777654
|
|
| >PRK13894 conjugal transfer ATPase TrbB; Provisional | Back alignment and domain information |
|---|
Probab=91.15 E-value=0.37 Score=57.30 Aligned_cols=27 Identities=37% Similarity=0.624 Sum_probs=22.2
Q ss_pred HHHHHHhcCCeEEEEcCCCcchhHHHH
Q psy3476 46 EIIDTVLKERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 46 ~il~~i~~~~~~iI~a~TGsGKTt~ip 72 (1417)
-+..+++.+.+++|+|+|||||||.+-
T Consensus 140 ~L~~~v~~~~~ilI~G~tGSGKTTll~ 166 (319)
T PRK13894 140 AIIAAVRAHRNILVIGGTGSGKTTLVN 166 (319)
T ss_pred HHHHHHHcCCeEEEECCCCCCHHHHHH
Confidence 344567889999999999999998653
|
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=91.11 E-value=0.95 Score=55.66 Aligned_cols=15 Identities=33% Similarity=0.576 Sum_probs=13.2
Q ss_pred CeEEEEcCCCcchhH
Q psy3476 55 RVVIIAGDTGCGKST 69 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt 69 (1417)
..++|.|++|+|||+
T Consensus 137 n~l~l~G~~G~GKTh 151 (405)
T TIGR00362 137 NPLFIYGGVGLGKTH 151 (405)
T ss_pred CeEEEECCCCCcHHH
Confidence 357899999999996
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=91.10 E-value=0.28 Score=48.89 Aligned_cols=25 Identities=28% Similarity=0.445 Sum_probs=19.5
Q ss_pred CCeEEEEcCCCcchhHHHHHHHHHc
Q psy3476 54 ERVVIIAGDTGCGKSTQIPQYLVQA 78 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ipq~ile~ 78 (1417)
+..++|.||+||||||.+-..+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~ 26 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALAREL 26 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhcc
Confidence 5688999999999998665554443
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.09 E-value=0.73 Score=58.82 Aligned_cols=34 Identities=21% Similarity=0.488 Sum_probs=27.4
Q ss_pred cCCCcHHHHHHHHHHHh--------cCCeEEEEcCCCcchhH
Q psy3476 36 NSLPVAQYKQEIIDTVL--------KERVVIIAGDTGCGKST 69 (1417)
Q Consensus 36 ~~lp~~~~q~~il~~i~--------~~~~~iI~a~TGsGKTt 69 (1417)
..--+-..++.|++.+. ++..++++||+|.|||.
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTS 365 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTS 365 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchh
Confidence 33456678899998774 66799999999999994
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=91.06 E-value=1.2 Score=51.69 Aligned_cols=17 Identities=24% Similarity=0.636 Sum_probs=15.2
Q ss_pred cCCeEEEEcCCCcchhH
Q psy3476 53 KERVVIIAGDTGCGKST 69 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt 69 (1417)
.+..+++.|+||+|||+
T Consensus 116 ~~~~l~l~G~~G~GKTh 132 (266)
T PRK06921 116 RKNSIALLGQPGSGKTH 132 (266)
T ss_pred CCCeEEEECCCCCcHHH
Confidence 46789999999999996
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=90.97 E-value=1.3 Score=51.00 Aligned_cols=16 Identities=25% Similarity=0.493 Sum_probs=14.4
Q ss_pred CCeEEEEcCCCcchhH
Q psy3476 54 ERVVIIAGDTGCGKST 69 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt 69 (1417)
...+++.|++|+|||+
T Consensus 101 ~~~l~l~G~~GtGKTh 116 (248)
T PRK12377 101 CTNFVFSGKPGTGKNH 116 (248)
T ss_pred CCeEEEECCCCCCHHH
Confidence 4688999999999996
|
|
| >PRK13900 type IV secretion system ATPase VirB11; Provisional | Back alignment and domain information |
|---|
Probab=90.89 E-value=0.39 Score=57.48 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=21.6
Q ss_pred HHHHHhcCCeEEEEcCCCcchhHHHH
Q psy3476 47 IIDTVLKERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 47 il~~i~~~~~~iI~a~TGsGKTt~ip 72 (1417)
+..+++.+.+++|+|+|||||||.+-
T Consensus 153 L~~~v~~~~nili~G~tgSGKTTll~ 178 (332)
T PRK13900 153 LEHAVISKKNIIISGGTSTGKTTFTN 178 (332)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHH
Confidence 34466789999999999999999763
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=90.74 E-value=0.32 Score=53.19 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=21.7
Q ss_pred HHHHHHhcCCeEEEEcCCCcchhHHH
Q psy3476 46 EIIDTVLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 46 ~il~~i~~~~~~iI~a~TGsGKTt~i 71 (1417)
-+...+..+.+++|+|||||||||.+
T Consensus 17 ~l~~~v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 17 YLWLAVEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHHHHhCCCEEEEECCCCCCHHHHH
Confidence 34456778999999999999999965
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=90.62 E-value=1.3 Score=53.82 Aligned_cols=45 Identities=16% Similarity=0.246 Sum_probs=32.4
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCC
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATI 361 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATl 361 (1417)
+.-..+.++||||+| .++......++|.+..-++...+|++|...
T Consensus 137 ~~~~~~kVviIDead--~m~~~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 137 AAEGGWRVVIVDTAD--EMNANAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred cccCCCEEEEEechH--hcCHHHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 344678899999999 456667778888887655666666665543
|
|
| >PRK13851 type IV secretion system protein VirB11; Provisional | Back alignment and domain information |
|---|
Probab=90.61 E-value=0.29 Score=58.72 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=22.6
Q ss_pred HHHHHHhcCCeEEEEcCCCcchhHHHHH
Q psy3476 46 EIIDTVLKERVVIIAGDTGCGKSTQIPQ 73 (1417)
Q Consensus 46 ~il~~i~~~~~~iI~a~TGsGKTt~ipq 73 (1417)
-+-.+++.+.+++|+|+|||||||.+-.
T Consensus 154 ~l~~~v~~~~nilI~G~tGSGKTTll~a 181 (344)
T PRK13851 154 FLHACVVGRLTMLLCGPTGSGKTTMSKT 181 (344)
T ss_pred HHHHHHHcCCeEEEECCCCccHHHHHHH
Confidence 3445677899999999999999997643
|
|
| >PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase | Back alignment and domain information |
|---|
Probab=90.59 E-value=0.14 Score=55.46 Aligned_cols=45 Identities=24% Similarity=0.265 Sum_probs=25.3
Q ss_pred EEEcCCCcchhHHHHHHHHH---cCCCcEEEecchHHHHHHHHHHHHH
Q psy3476 58 IIAGDTGCGKSTQIPQYLVQ---AGFQRIACTQPRRIACISLSKRVAY 102 (1417)
Q Consensus 58 iI~a~TGsGKTt~ipq~ile---~~~~~i~~tqPrr~aa~~~a~rva~ 102 (1417)
||+|+-|.|||+.+-..+.. .+..+|+||.|+..++.++.+.+..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~ 48 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEK 48 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC--
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHh
Confidence 68999999999976655433 3335899999999888777665443
|
This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B. |
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=90.53 E-value=1.8 Score=56.00 Aligned_cols=77 Identities=14% Similarity=0.109 Sum_probs=53.5
Q ss_pred HHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCC----CCceEEEec
Q psy3476 412 ILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPE----GLRKCIVST 487 (1417)
Q Consensus 412 il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~----G~rkVLVAT 487 (1417)
+.+.+.+.+. ..+|.+||-+++...++.+++.+.... .+. +...|..+ .+...++.|++ |...||++|
T Consensus 458 ~~~~~~~~~~-~~~G~~lvLfTS~~~~~~~~~~l~~~l----~~~-~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt 529 (636)
T TIGR03117 458 VSLSTAAILR-KAQGGTLVLTTAFSHISAIGQLVELGI----PAE-IVIQSEKN--RLASAEQQFLALYANGIQPVLIAA 529 (636)
T ss_pred HHHHHHHHHH-HcCCCEEEEechHHHHHHHHHHHHhhc----CCC-EEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeC
Confidence 4444444443 347899999999999999999986522 222 33455443 23445555554 578999999
Q ss_pred chhhccCCc
Q psy3476 488 NIAETSITI 496 (1417)
Q Consensus 488 nIae~GIdI 496 (1417)
+.+-.|||+
T Consensus 530 ~sfweGvDv 538 (636)
T TIGR03117 530 GGAWTGIDL 538 (636)
T ss_pred Ccccccccc
Confidence 999999999
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=90.34 E-value=1.1 Score=55.98 Aligned_cols=16 Identities=31% Similarity=0.605 Sum_probs=13.6
Q ss_pred CeEEEEcCCCcchhHH
Q psy3476 55 RVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ 70 (1417)
..++|.|++|+|||+.
T Consensus 142 npl~i~G~~G~GKTHL 157 (450)
T PRK14087 142 NPLFIYGESGMGKTHL 157 (450)
T ss_pred CceEEECCCCCcHHHH
Confidence 3588999999999963
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=90.19 E-value=0.63 Score=62.52 Aligned_cols=111 Identities=16% Similarity=0.188 Sum_probs=87.6
Q ss_pred cEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCC--CceEEEecchhhccCCcCCeEEEEc
Q psy3476 427 DVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEG--LRKCIVSTNIAETSITIDGIRFVVD 504 (1417)
Q Consensus 427 ~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G--~rkVLVATnIae~GIdIP~V~~VId 504 (1417)
++|||..-..-..-+...+.. .++....++|+++.++|...++.|.++ ..-++++|-....|+|.-+...||.
T Consensus 713 kvlifsq~t~~l~il~~~l~~-----~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~ 787 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKA-----LGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVIL 787 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHh-----cCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEE
Confidence 799999999988888888876 346799999999999999999999985 5667888889999999999999998
Q ss_pred CCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHH
Q psy3476 505 SGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS 557 (1417)
Q Consensus 505 sG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~ 557 (1417)
||+.-+.... .++..|+-|.|+..+=.+|++.++...+
T Consensus 788 --------~d~~wnp~~~-------~Qa~dRa~RigQ~~~v~v~r~i~~~tiE 825 (866)
T COG0553 788 --------FDPWWNPAVE-------LQAIDRAHRIGQKRPVKVYRLITRGTIE 825 (866)
T ss_pred --------eccccChHHH-------HHHHHHHHHhcCcceeEEEEeecCCcHH
Confidence 7775443322 2444455555555577889999887644
|
|
| >PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional | Back alignment and domain information |
|---|
Probab=90.19 E-value=0.54 Score=55.35 Aligned_cols=56 Identities=18% Similarity=0.102 Sum_probs=35.5
Q ss_pred CCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHh----hhhhhHHHHHHHHhhhhhhhh
Q psy3476 124 EKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERA----LRHGEIKLLQAIKRKKAEEAP 181 (1417)
Q Consensus 124 ~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 181 (1417)
.+..|+++-+|..++.+..+...+|.+ +-..|++. ...|.-.|.+.|+..|-+.+.
T Consensus 92 gk~PilvGGTglYi~all~gl~~~p~~--~~~~r~~~~~~~~~~g~~~l~~~L~~~DP~~A~ 151 (300)
T PRK14729 92 KKIPIFVGGSAFYFKHLKYGLPSTPPV--SSKIRIYVNNLFTLKGKSYLLEELKRVDFIRYE 151 (300)
T ss_pred CCCEEEEeCchHHHHHHHcCCCCCCCC--CHHHHHHHHHHHHhcCHHHHHHHHHhcCHHHHh
Confidence 345689999999999998875444433 33334442 345666677777766654433
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=90.07 E-value=1 Score=57.63 Aligned_cols=14 Identities=36% Similarity=0.707 Sum_probs=12.8
Q ss_pred eEEEEcCCCcchhH
Q psy3476 56 VVIIAGDTGCGKST 69 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt 69 (1417)
.++|.|++|||||.
T Consensus 316 pL~LyG~sGsGKTH 329 (617)
T PRK14086 316 PLFIYGESGLGKTH 329 (617)
T ss_pred cEEEECCCCCCHHH
Confidence 48999999999996
|
|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=90.05 E-value=0.23 Score=57.44 Aligned_cols=23 Identities=30% Similarity=0.657 Sum_probs=18.4
Q ss_pred cCCeEEEEcCCCcchhHHHHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQYL 75 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~i 75 (1417)
....++|.|||||||||.+...|
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamI 146 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMI 146 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHH
Confidence 45689999999999998765444
|
|
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=89.99 E-value=0.85 Score=55.98 Aligned_cols=40 Identities=23% Similarity=0.311 Sum_probs=24.2
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEE
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIIL 356 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIl 356 (1417)
+.+.++.++||||+| .+...-...+++.+...++...+|+
T Consensus 123 p~~~~~kvvIIdea~--~l~~~~~~~LLk~LEep~~~t~~Il 162 (397)
T PRK14955 123 PQKGRYRVYIIDEVH--MLSIAAFNAFLKTLEEPPPHAIFIF 162 (397)
T ss_pred hhcCCeEEEEEeChh--hCCHHHHHHHHHHHhcCCCCeEEEE
Confidence 567788999999999 3333334455555544334444444
|
|
| >KOG0388|consensus | Back alignment and domain information |
|---|
Probab=89.99 E-value=1 Score=56.68 Aligned_cols=115 Identities=20% Similarity=0.206 Sum_probs=88.0
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCC-ceEEEecchhhccCCcCCeEE
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGL-RKCIVSTNIAETSITIDGIRF 501 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~-rkVLVATnIae~GIdIP~V~~ 501 (1417)
.++..+|+|..--+-+.-+-+.|.. .++.-+.|.|.....+|..+...+.... .-.+++|-...-|||+.+.+.
T Consensus 1042 aegHRvL~yfQMTkM~dl~EdYl~y-----r~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADT 1116 (1185)
T KOG0388|consen 1042 AEGHRVLMYFQMTKMIDLIEDYLVY-----RGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAADT 1116 (1185)
T ss_pred cCCceEEehhHHHHHHHHHHHHHHh-----hccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccce
Confidence 4567899998777777777777755 6788999999999999999999887654 456889999999999999999
Q ss_pred EEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHH
Q psy3476 502 VVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS 557 (1417)
Q Consensus 502 VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~ 557 (1417)
||- ||..-+.. -..++.-|+-|-|-+..-.+|+|.++...+
T Consensus 1117 ViF--------YdSDWNPT-------~D~QAMDRAHRLGQTrdvtvyrl~~rgTvE 1157 (1185)
T KOG0388|consen 1117 VIF--------YDSDWNPT-------ADQQAMDRAHRLGQTRDVTVYRLITRGTVE 1157 (1185)
T ss_pred EEE--------ecCCCCcc-------hhhHHHHHHHhccCccceeeeeecccccHH
Confidence 996 77554322 223445555555555567899999987665
|
|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=89.91 E-value=0.31 Score=64.43 Aligned_cols=24 Identities=21% Similarity=0.151 Sum_probs=20.3
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHh
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQE 447 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~ 447 (1417)
+++.|||||+....|..+.+.|..
T Consensus 294 ~~~~iLI~~~d~~T~~qL~~~L~~ 317 (814)
T TIGR00596 294 GPGKVLIMCSDNRTCLQLRDYLTT 317 (814)
T ss_pred CCCcEEEEEcchHHHHHHHHHHHh
Confidence 457899999999999998887744
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop | Back alignment and domain information |
|---|
Probab=89.76 E-value=0.5 Score=48.37 Aligned_cols=37 Identities=22% Similarity=0.427 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC
Q psy3476 43 YKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG 79 (1417)
Q Consensus 43 ~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~ 79 (1417)
.-+.+.+.+..++++++.|+-|+||||.+-.++...+
T Consensus 4 la~~l~~~l~~g~vi~L~GdLGaGKTtf~r~l~~~lg 40 (123)
T PF02367_consen 4 LAKKLAQILKPGDVILLSGDLGAGKTTFVRGLARALG 40 (123)
T ss_dssp HHHHHHHHHSS-EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456778889999999999999999986554444333
|
They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A. |
| >COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=89.61 E-value=0.25 Score=61.83 Aligned_cols=41 Identities=29% Similarity=0.440 Sum_probs=32.8
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEE
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILM 357 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlm 357 (1417)
|.-.+|++.||||+| ++...-..+++|.+..-++.+.+|+.
T Consensus 115 P~~~ryKVyiIDEvH--MLS~~afNALLKTLEEPP~hV~FIlA 155 (515)
T COG2812 115 PSEGRYKVYIIDEVH--MLSKQAFNALLKTLEEPPSHVKFILA 155 (515)
T ss_pred CccccceEEEEecHH--hhhHHHHHHHhcccccCccCeEEEEe
Confidence 567789999999999 78888888999988776666655553
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=89.52 E-value=0.94 Score=58.42 Aligned_cols=41 Identities=27% Similarity=0.419 Sum_probs=26.2
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEE
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILM 357 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlm 357 (1417)
+.+.++++|||||+| .+..+-...+++.+..-++...+|+.
T Consensus 116 p~~~~~kVvIIDEa~--~L~~~a~naLLk~LEepp~~tv~Il~ 156 (585)
T PRK14950 116 PALARYKVYIIDEVH--MLSTAAFNALLKTLEEPPPHAIFILA 156 (585)
T ss_pred cccCCeEEEEEeChH--hCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 455678999999999 44455556666666554444444443
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=89.47 E-value=2.7 Score=48.94 Aligned_cols=51 Identities=10% Similarity=0.176 Sum_probs=32.3
Q ss_pred CCccEEEEecCccccc-CcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHH
Q psy3476 318 SSYDVLVLDEIHERHL-HGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369 (1417)
Q Consensus 318 ~~~~~VIlDEaHER~l-~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~ 369 (1417)
.++++||||.+= |+. +.+.+..+.+.+....++..++.+|||...++..++
T Consensus 153 ~~~D~ViIDt~G-r~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~ 204 (270)
T PRK06731 153 ARVDYILIDTAG-KNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEI 204 (270)
T ss_pred CCCCEEEEECCC-CCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHH
Confidence 368999999996 443 344455555544444556567789999855444333
|
|
| >TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB | Back alignment and domain information |
|---|
Probab=89.38 E-value=0.37 Score=58.26 Aligned_cols=25 Identities=52% Similarity=0.834 Sum_probs=20.1
Q ss_pred HHHHHh-cCCeEEEEcCCCcchhHHH
Q psy3476 47 IIDTVL-KERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 47 il~~i~-~~~~~iI~a~TGsGKTt~i 71 (1417)
+.+.+. .+..++|+|||||||||.+
T Consensus 126 ~~~~~~~~~glilI~GpTGSGKTTtL 151 (358)
T TIGR02524 126 IIDAIAPQEGIVFITGATGSGKSTLL 151 (358)
T ss_pred HHHHHhccCCEEEEECCCCCCHHHHH
Confidence 445554 6789999999999999965
|
Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems. |
| >PHA03333 putative ATPase subunit of terminase; Provisional | Back alignment and domain information |
|---|
Probab=88.90 E-value=8.7 Score=49.66 Aligned_cols=52 Identities=19% Similarity=0.260 Sum_probs=38.4
Q ss_pred cCCeEEEEcCCCcchhHHHHHH---HHHcCCCcEEEecchHHHHHHHHHHHHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQY---LVQAGFQRIACTQPRRIACISLSKRVAYET 104 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~---ile~~~~~i~~tqPrr~aa~~~a~rva~e~ 104 (1417)
+.+..++.+|=|+|||+.+-.+ +......+|++|.|+.-.+.++-+++..-+
T Consensus 186 kq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~l 240 (752)
T PHA03333 186 GKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVV 240 (752)
T ss_pred hhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHH
Confidence 4567799999999999875433 222122589999999888888888776554
|
|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=88.81 E-value=1.2 Score=57.33 Aligned_cols=42 Identities=26% Similarity=0.462 Sum_probs=29.4
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
+...+++++||||+| .+..+-...+++.+..-++...+|+.+
T Consensus 115 p~~~~~KVvIIdev~--~Lt~~a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 115 PSRSRYKIFIIDEVH--MLSTNAFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred cccCCceEEEEEChh--hCCHHHHHHHHHHHHcCCCCeEEEEEe
Confidence 455789999999999 455555667777776655566666543
|
|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=88.54 E-value=2.5 Score=48.74 Aligned_cols=23 Identities=17% Similarity=0.492 Sum_probs=18.7
Q ss_pred HHHHHhcCCeEEEEcCCCcchhH
Q psy3476 47 IIDTVLKERVVIIAGDTGCGKST 69 (1417)
Q Consensus 47 il~~i~~~~~~iI~a~TGsGKTt 69 (1417)
..+.+..+.++++.|++|+|||.
T Consensus 98 ~~~~~~~~~nl~l~G~~G~GKTh 120 (254)
T COG1484 98 LVEFFERGENLVLLGPPGVGKTH 120 (254)
T ss_pred HHHHhccCCcEEEECCCCCcHHH
Confidence 33455578899999999999996
|
|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=88.50 E-value=1.4 Score=55.73 Aligned_cols=42 Identities=24% Similarity=0.472 Sum_probs=31.2
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
+....++++|||||| .+..+....+++.+..-++...+|+.+
T Consensus 113 P~~~~~KVvIIDEad--~Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 113 PSMARFKIFIIDEVH--MLTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred cccCCeEEEEEECcc--cCCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 456688999999999 455666777788777766666666654
|
|
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=88.45 E-value=0.8 Score=55.57 Aligned_cols=55 Identities=24% Similarity=0.400 Sum_probs=41.3
Q ss_pred HHHHHHHHHH------hcCCeEEEEcCCCcchhHHHHHHH--HHcCCCcEEEecchHHHHHHH
Q psy3476 42 QYKQEIIDTV------LKERVVIIAGDTGCGKSTQIPQYL--VQAGFQRIACTQPRRIACISL 96 (1417)
Q Consensus 42 ~~q~~il~~i------~~~~~~iI~a~TGsGKTt~ipq~i--le~~~~~i~~tqPrr~aa~~~ 96 (1417)
..|+++++.+ .++.++.|.|+-|+|||+.+-.++ +......++++.|+.+||..+
T Consensus 4 ~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i 66 (364)
T PF05970_consen 4 EEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNI 66 (364)
T ss_pred HHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhc
Confidence 4566666666 778899999999999998764443 233335799999999988765
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >KOG0989|consensus | Back alignment and domain information |
|---|
Probab=88.26 E-value=0.61 Score=54.17 Aligned_cols=41 Identities=15% Similarity=0.317 Sum_probs=30.8
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
....+++||+||+| ++..|-...+.+.+.......++|+..
T Consensus 126 ~~~~fKiiIlDEcd--smtsdaq~aLrr~mE~~s~~trFiLIc 166 (346)
T KOG0989|consen 126 PCPPFKIIILDECD--SMTSDAQAALRRTMEDFSRTTRFILIC 166 (346)
T ss_pred CCCcceEEEEechh--hhhHHHHHHHHHHHhccccceEEEEEc
Confidence 45668999999999 666777777777776666667777764
|
|
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=88.18 E-value=1.1 Score=55.66 Aligned_cols=15 Identities=27% Similarity=0.554 Sum_probs=13.3
Q ss_pred CeEEEEcCCCcchhH
Q psy3476 55 RVVIIAGDTGCGKST 69 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt 69 (1417)
..++|.||+|+|||+
T Consensus 142 npl~L~G~~G~GKTH 156 (445)
T PRK12422 142 NPIYLFGPEGSGKTH 156 (445)
T ss_pred ceEEEEcCCCCCHHH
Confidence 458999999999997
|
|
| >PRK11054 helD DNA helicase IV; Provisional | Back alignment and domain information |
|---|
Probab=88.16 E-value=2.2 Score=55.87 Aligned_cols=68 Identities=18% Similarity=0.270 Sum_probs=52.0
Q ss_pred cCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHH---HHHHHcCC---CcEEEecchHHHHHHHHHHHHHHHc
Q psy3476 36 NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIP---QYLVQAGF---QRIACTQPRRIACISLSKRVAYETL 105 (1417)
Q Consensus 36 ~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ip---q~ile~~~---~~i~~tqPrr~aa~~~a~rva~e~~ 105 (1417)
.+-|+...|.+++.. ....++|.|..|||||+.+. .+++..+. .+|+++..+|-||..+.+|+....+
T Consensus 193 e~~~L~~~Q~~av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 193 ESSPLNPSQARAVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred cCCCCCHHHHHHHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 456888888888753 44567899999999998754 45555442 4799999999999999999877653
|
|
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=88.14 E-value=2 Score=46.79 Aligned_cols=41 Identities=15% Similarity=0.228 Sum_probs=26.2
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEE
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILM 357 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlm 357 (1417)
+......+|||||+| .+..+....+++.+...++...+|+.
T Consensus 92 ~~~~~~kviiide~~--~l~~~~~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 92 PQESGRRVVIIEDAE--RMNEAAANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred cccCCeEEEEEechh--hhCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 445678999999999 34444555666666554444444444
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=88.10 E-value=1.7 Score=48.92 Aligned_cols=14 Identities=29% Similarity=0.598 Sum_probs=12.9
Q ss_pred eEEEEcCCCcchhH
Q psy3476 56 VVIIAGDTGCGKST 69 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt 69 (1417)
.+.|.||+|+|||.
T Consensus 36 ~l~l~G~~G~GKTH 49 (219)
T PF00308_consen 36 PLFLYGPSGLGKTH 49 (219)
T ss_dssp EEEEEESTTSSHHH
T ss_pred ceEEECCCCCCHHH
Confidence 58999999999997
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.02 E-value=2.2 Score=55.52 Aligned_cols=48 Identities=23% Similarity=0.281 Sum_probs=36.3
Q ss_pred CeEEEEcCCCcchhHHHHHH---HHHcC-CCcEEEecchHHHHHHHHHHHHH
Q psy3476 55 RVVIIAGDTGCGKSTQIPQY---LVQAG-FQRIACTQPRRIACISLSKRVAY 102 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ipq~---ile~~-~~~i~~tqPrr~aa~~~a~rva~ 102 (1417)
+.++|+|+=|=|||..+-.+ +...+ ..+|++|.|+..++.++.+...+
T Consensus 232 ~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~~Lf~fa~~ 283 (758)
T COG1444 232 RALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQTLFEFAGK 283 (758)
T ss_pred ceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHHHHHHHHHH
Confidence 38999999999999876533 33333 46999999999888777765433
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=87.95 E-value=0.19 Score=66.26 Aligned_cols=64 Identities=14% Similarity=0.124 Sum_probs=51.2
Q ss_pred CcHHHHHHHHHH-HhcCCeEEEEcCCCcchhHHHHHHHHHc---CCCcEEEecchHHHHHHHHHHHHH
Q psy3476 39 PVAQYKQEIIDT-VLKERVVIIAGDTGCGKSTQIPQYLVQA---GFQRIACTQPRRIACISLSKRVAY 102 (1417)
Q Consensus 39 p~~~~q~~il~~-i~~~~~~iI~a~TGsGKTt~ipq~ile~---~~~~i~~tqPrr~aa~~~a~rva~ 102 (1417)
-.+.+|.++++. +.+++++++++|||||||..+..++++. ...++++..|+|..+.+..+++..
T Consensus 23 ~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~ 90 (720)
T PRK00254 23 ELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKD 90 (720)
T ss_pred CCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHH
Confidence 356789999975 8899999999999999999876666543 235788889999988888877653
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=87.90 E-value=0.62 Score=57.04 Aligned_cols=51 Identities=35% Similarity=0.428 Sum_probs=35.7
Q ss_pred CCeEEEEcCCCcchhHHHHHHHHHc----CC-CcEEEecchHHHHHHHHHHHHHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQIPQYLVQA----GF-QRIACTQPRRIACISLSKRVAYET 104 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ipq~ile~----~~-~~i~~tqPrr~aa~~~a~rva~e~ 104 (1417)
+.+++++|||||||||++.++.... +. ..++-+-+-|.++....++.+...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~l 278 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTM 278 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhc
Confidence 4578899999999999988776432 22 235566677888777666665543
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=87.88 E-value=0.4 Score=53.02 Aligned_cols=18 Identities=44% Similarity=0.804 Sum_probs=15.3
Q ss_pred CeEEEEcCCCcchhHHHH
Q psy3476 55 RVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ip 72 (1417)
..++|+|||||||||.+-
T Consensus 2 GlilI~GptGSGKTTll~ 19 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 468999999999999653
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >PRK14953 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=87.86 E-value=1.5 Score=55.34 Aligned_cols=40 Identities=25% Similarity=0.399 Sum_probs=25.7
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEE
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIIL 356 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIl 356 (1417)
+...++.++||||+| .+..+....+++.+...++..-+|+
T Consensus 115 P~~~~~KVvIIDEad--~Lt~~a~naLLk~LEepp~~~v~Il 154 (486)
T PRK14953 115 PIKGKYKVYIIDEAH--MLTKEAFNALLKTLEEPPPRTIFIL 154 (486)
T ss_pred cccCCeeEEEEEChh--hcCHHHHHHHHHHHhcCCCCeEEEE
Confidence 556788999999999 4444445566666655444444443
|
|
| >PRK05973 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=87.84 E-value=0.73 Score=52.46 Aligned_cols=53 Identities=19% Similarity=0.322 Sum_probs=38.7
Q ss_pred hhhhhhchHHHHHH-hcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 21 QKEKFSTLMKIRET-QNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 21 ~~~~~~~~~~~~~~-r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
+.+.|..+.-+... ....| .+++..-+..+..++|.|++|+|||+...|++.+
T Consensus 34 ~~~g~~~w~~~~~~~~~~~p----~~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~ 87 (237)
T PRK05973 34 AEEGFSSWSLLAAKAAATTP----AEELFSQLKPGDLVLLGARPGHGKTLLGLELAVE 87 (237)
T ss_pred HHhccchHHHHHHhccCCCC----HHHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 56667777665533 23355 3456667788999999999999999987777765
|
|
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
Probab=87.84 E-value=0.65 Score=53.83 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=22.5
Q ss_pred HHHHHHHH-HHh-cCCeEEEEcCCCcchhHHHHHH
Q psy3476 42 QYKQEIID-TVL-KERVVIIAGDTGCGKSTQIPQY 74 (1417)
Q Consensus 42 ~~q~~il~-~i~-~~~~~iI~a~TGsGKTt~ipq~ 74 (1417)
..+.+.+. .+. .+..++|+|+|||||||.+-.+
T Consensus 66 ~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~al 100 (264)
T cd01129 66 PENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSA 100 (264)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHH
Confidence 33444444 443 3568999999999999966443
|
It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB. |
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=87.77 E-value=2.2 Score=55.67 Aligned_cols=42 Identities=26% Similarity=0.413 Sum_probs=28.2
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
+....++++|||||| .+..+....+++.+..-++...+|+.+
T Consensus 114 P~~g~~KV~IIDEa~--~LT~~A~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 114 PTQSKYKIYIIDEVH--MLSKSAFNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred hhcCCCEEEEEEChh--hCCHHHHHHHHHHhhcCCCceEEEEEc
Confidence 456789999999999 455556667777766544444444433
|
|
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
Probab=87.75 E-value=0.97 Score=52.25 Aligned_cols=30 Identities=20% Similarity=0.265 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCcchhHHH
Q psy3476 42 QYKQEIIDTVLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 42 ~~q~~il~~i~~~~~~iI~a~TGsGKTt~i 71 (1417)
...+.++..+..+..+++.||+|||||+.+
T Consensus 9 ~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA 38 (262)
T TIGR02640 9 RVTSRALRYLKSGYPVHLRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHHHHHHhcCCeEEEEcCCCCCHHHHH
Confidence 445678888889999999999999999743
|
Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728). |
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=87.61 E-value=0.86 Score=53.31 Aligned_cols=50 Identities=26% Similarity=0.367 Sum_probs=31.5
Q ss_pred cCCeEEEEcCCCcchhHHHHHHHH---Hc-C-C-CcEEEecchHHHHHHHHHHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQYLV---QA-G-F-QRIACTQPRRIACISLSKRVAY 102 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~il---e~-~-~-~~i~~tqPrr~aa~~~a~rva~ 102 (1417)
.+++++++||||+||||.+..... .. + . ..++-+-|-|.++.......+.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~ 248 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAK 248 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHH
Confidence 345899999999999997655433 22 3 2 2355566667766554444443
|
|
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=87.55 E-value=2.3 Score=54.98 Aligned_cols=61 Identities=16% Similarity=0.242 Sum_probs=35.1
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEEe
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKV 379 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v 379 (1417)
+.+.++++|||||+| .+...-...+++.+..-++...+|+.+ | +...+..-+...+.++..
T Consensus 123 P~~~~~KVvIIdEad--~Lt~~a~naLLK~LEePp~~tv~IL~t-~-~~~kLl~TI~SRc~~vef 183 (620)
T PRK14954 123 PQKGRYRVYIIDEVH--MLSTAAFNAFLKTLEEPPPHAIFIFAT-T-ELHKIPATIASRCQRFNF 183 (620)
T ss_pred hhcCCCEEEEEeChh--hcCHHHHHHHHHHHhCCCCCeEEEEEe-C-ChhhhhHHHHhhceEEec
Confidence 567789999999999 334444556666665544555555554 3 334443333334444443
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=87.54 E-value=3.1 Score=47.74 Aligned_cols=62 Identities=24% Similarity=0.278 Sum_probs=42.1
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEEeCC
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPG 381 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~g 381 (1417)
...++-+++++||-= -.+|..-...+...+...+.+-+.|+|. |-|.....+|+ ..++.+..
T Consensus 153 AL~~~p~lllLDEP~-~gvD~~~~~~i~~lL~~l~~eg~tIl~v-tHDL~~v~~~~---D~vi~Ln~ 214 (254)
T COG1121 153 ALAQNPDLLLLDEPF-TGVDVAGQKEIYDLLKELRQEGKTVLMV-THDLGLVMAYF---DRVICLNR 214 (254)
T ss_pred HhccCCCEEEecCCc-ccCCHHHHHHHHHHHHHHHHCCCEEEEE-eCCcHHhHhhC---CEEEEEcC
Confidence 456788999999986 5666665666666666666555666665 66878888888 34555443
|
|
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=87.49 E-value=1.6 Score=55.86 Aligned_cols=40 Identities=30% Similarity=0.425 Sum_probs=25.6
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEE
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIIL 356 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIl 356 (1417)
+....+.++||||+| .+..+-...+++.+..-+....+|+
T Consensus 115 p~~~~~kViIIDE~~--~Lt~~a~naLLKtLEepp~~~ifIl 154 (559)
T PRK05563 115 PSEAKYKVYIIDEVH--MLSTGAFNALLKTLEEPPAHVIFIL 154 (559)
T ss_pred cccCCeEEEEEECcc--cCCHHHHHHHHHHhcCCCCCeEEEE
Confidence 456689999999999 4455556667776654333333333
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=87.48 E-value=1 Score=59.43 Aligned_cols=47 Identities=13% Similarity=0.292 Sum_probs=32.1
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHH----cC-CCcEEEecch
Q psy3476 43 YKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ----AG-FQRIACTQPR 89 (1417)
Q Consensus 43 ~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile----~~-~~~i~~tqPr 89 (1417)
+-+.+++++..+++.++.+|||+|||..+.-..+. .+ ..+|++...+
T Consensus 18 ~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRT 69 (705)
T TIGR00604 18 YMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRT 69 (705)
T ss_pred HHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEccc
Confidence 34456777789999999999999999765544443 22 2456555444
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK10919 ATP-dependent DNA helicase Rep; Provisional | Back alignment and domain information |
|---|
Probab=87.29 E-value=1.1 Score=58.83 Aligned_cols=63 Identities=21% Similarity=0.294 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCcchhHHHH---HHHHH-cCC--CcEEEecchHHHHHHHHHHHHHHHc
Q psy3476 41 AQYKQEIIDTVLKERVVIIAGDTGCGKSTQIP---QYLVQ-AGF--QRIACTQPRRIACISLSKRVAYETL 105 (1417)
Q Consensus 41 ~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ip---q~ile-~~~--~~i~~tqPrr~aa~~~a~rva~e~~ 105 (1417)
...|.+++.. .+..++|.|..|||||+.+. .++++ .+. .+|+++--+|-||..+.+|+....+
T Consensus 4 n~~Q~~av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 4 NPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 4557777764 34567888999999998754 34554 354 4799999999999999999987654
|
|
| >PF13872 AAA_34: P-loop containing NTP hydrolase pore-1 | Back alignment and domain information |
|---|
Probab=87.26 E-value=6 Score=46.46 Aligned_cols=38 Identities=18% Similarity=0.339 Sum_probs=28.0
Q ss_pred CCeEEEEcCCCcchhHHHHHHHHHc---CCC-cEEEecchHH
Q psy3476 54 ERVVIIAGDTGCGKSTQIPQYLVQA---GFQ-RIACTQPRRI 91 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ipq~ile~---~~~-~i~~tqPrr~ 91 (1417)
..-.+|-=.||.||--|+...|+++ |.. .|+++..--+
T Consensus 62 R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL 103 (303)
T PF13872_consen 62 RAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDL 103 (303)
T ss_pred CcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhh
Confidence 3455666679999999999999886 333 5888876544
|
|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=87.16 E-value=2.4 Score=53.68 Aligned_cols=41 Identities=24% Similarity=0.324 Sum_probs=25.9
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEE
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILM 357 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlm 357 (1417)
+.+.+..+|||||+| .+..+....+++.+...++...+|+.
T Consensus 112 p~~~~~kVVIIDEad--~ls~~a~naLLk~LEep~~~t~~Il~ 152 (504)
T PRK14963 112 PLRGGRKVYILDEAH--MMSKSAFNALLKTLEEPPEHVIFILA 152 (504)
T ss_pred cccCCCeEEEEECcc--ccCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 455678999999999 33444566666666554444444443
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=87.00 E-value=3 Score=49.73 Aligned_cols=50 Identities=24% Similarity=0.287 Sum_probs=29.7
Q ss_pred CCeEEEEcCCCcchhHHHHHH---HHHcCCCc-EEEecchHHHHHHHHHHHHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQIPQY---LVQAGFQR-IACTQPRRIACISLSKRVAYE 103 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ipq~---ile~~~~~-i~~tqPrr~aa~~~a~rva~e 103 (1417)
+.++.++||+|+||||.+... +...+..- ++-.-+.|.+|..-....+..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~ 167 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGER 167 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHH
Confidence 468899999999999975433 33333322 333445566655444444444
|
|
| >COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=86.84 E-value=1.1 Score=53.02 Aligned_cols=45 Identities=20% Similarity=0.209 Sum_probs=31.1
Q ss_pred HHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC-CcEEEecchHH
Q psy3476 47 IIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF-QRIACTQPRRI 91 (1417)
Q Consensus 47 il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~-~~i~~tqPrr~ 91 (1417)
+..++....+++|+|.|||||||.+=.....-.. .|++|.+-+..
T Consensus 166 L~~av~~r~NILisGGTGSGKTTlLNal~~~i~~~eRvItiEDtaE 211 (355)
T COG4962 166 LRRAVGIRCNILISGGTGSGKTTLLNALSGFIDSDERVITIEDTAE 211 (355)
T ss_pred HHHHHhhceeEEEeCCCCCCHHHHHHHHHhcCCCcccEEEEeehhh
Confidence 3445556679999999999999976544433222 48888877643
|
|
| >PRK10436 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.76 E-value=0.74 Score=57.44 Aligned_cols=32 Identities=16% Similarity=0.359 Sum_probs=21.9
Q ss_pred HHHHHHHHH-H-hcCCeEEEEcCCCcchhHHHHH
Q psy3476 42 QYKQEIIDT-V-LKERVVIIAGDTGCGKSTQIPQ 73 (1417)
Q Consensus 42 ~~q~~il~~-i-~~~~~~iI~a~TGsGKTt~ipq 73 (1417)
..+.+.+.. + ..+..++|+|||||||||.+-.
T Consensus 204 ~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a 237 (462)
T PRK10436 204 PAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYS 237 (462)
T ss_pred HHHHHHHHHHHHhcCCeEEEECCCCCChHHHHHH
Confidence 334444443 3 3567899999999999996543
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=86.68 E-value=2.5 Score=54.42 Aligned_cols=39 Identities=28% Similarity=0.490 Sum_probs=24.1
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEE
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIIL 356 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIl 356 (1417)
...++.+|||||+| .+..+....+++.+..-.+...+|+
T Consensus 116 ~~g~~kVIIIDEad--~Lt~~a~naLLk~LEEP~~~~ifIL 154 (624)
T PRK14959 116 MEGRYKVFIIDEAH--MLTREAFNALLKTLEEPPARVTFVL 154 (624)
T ss_pred hcCCceEEEEEChH--hCCHHHHHHHHHHhhccCCCEEEEE
Confidence 34578899999999 4445555666666654333333333
|
|
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=86.67 E-value=0.78 Score=54.38 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=20.4
Q ss_pred HHHhcCCeEEEEcCCCcchhHHHH
Q psy3476 49 DTVLKERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 49 ~~i~~~~~~iI~a~TGsGKTt~ip 72 (1417)
..++.+.+++|+|+|||||||.+-
T Consensus 139 ~~v~~~~~ili~G~tGsGKTTll~ 162 (308)
T TIGR02788 139 LAIASRKNIIISGGTGSGKTTFLK 162 (308)
T ss_pred HHhhCCCEEEEECCCCCCHHHHHH
Confidence 456688999999999999999653
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=86.65 E-value=1.4 Score=56.25 Aligned_cols=42 Identities=24% Similarity=0.313 Sum_probs=26.7
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
+...+++++||||+| .+..+-...+++.+..-++...+|+++
T Consensus 115 P~~~~~KVIIIDEad--~Lt~~A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 115 PTTFKYKVYIIDEAH--MLSTSAWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred hhhCCcEEEEEechH--hCCHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 345578999999999 344444556666665544555555544
|
|
| >TIGR00174 miaA tRNA isopentenyltransferase (miaA) | Back alignment and domain information |
|---|
Probab=86.61 E-value=2.6 Score=49.48 Aligned_cols=52 Identities=19% Similarity=0.174 Sum_probs=32.4
Q ss_pred CCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHh----hhhhhHHHHHHHHhhhh
Q psy3476 124 EKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERA----LRHGEIKLLQAIKRKKA 177 (1417)
Q Consensus 124 ~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ 177 (1417)
.+..|+++-+|+.++.+..+....|.+ .-+.|++. ...|.-.|.+.|+..|-
T Consensus 88 g~~pi~vGGTg~Yi~all~g~~~~p~~--~~~~r~~l~~~~~~~g~~~l~~~L~~~DP 143 (287)
T TIGR00174 88 GKIPLLVGGTGLYLKALLEGLSPTPSA--DKLIREQLEILAEEQGWDFLYNELKKVDP 143 (287)
T ss_pred CCCEEEEcCcHHHHHHHHcCCCCCCCC--CHHHHHHHHHHHHHcCHHHHHHHHHhcCH
Confidence 356788999999999999875433322 33345443 33455556666665553
|
Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine. |
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=86.61 E-value=1.1 Score=52.06 Aligned_cols=51 Identities=27% Similarity=0.353 Sum_probs=31.0
Q ss_pred CCeEEEEcCCCcchhHHHHHH---HHHcCCCc-EEEecchHHHHHHHHHHHHHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQIPQY---LVQAGFQR-IACTQPRRIACISLSKRVAYET 104 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ipq~---ile~~~~~-i~~tqPrr~aa~~~a~rva~e~ 104 (1417)
.++++++|++|+||||.+... +.+.+..- ++.+-+-|.++..-.+.++..+
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~a~~ql~~~~~~~ 126 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEEWAKRL 126 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHHHHHHHHHHHHhC
Confidence 357888999999999975433 33444322 3344566776655444455543
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=86.55 E-value=5.8 Score=46.88 Aligned_cols=25 Identities=28% Similarity=0.396 Sum_probs=16.9
Q ss_pred HHHHHHhcCC---eEEEEcCCCcchhHH
Q psy3476 46 EIIDTVLKER---VVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 46 ~il~~i~~~~---~~iI~a~TGsGKTt~ 70 (1417)
.+...+.+++ .+++.||+|+|||+.
T Consensus 32 ~l~~~~~~~~~~~~lll~G~~G~GKT~l 59 (316)
T PHA02544 32 TFKSIVKKGRIPNMLLHSPSPGTGKTTV 59 (316)
T ss_pred HHHHHHhcCCCCeEEEeeCcCCCCHHHH
Confidence 4444444543 555599999999974
|
|
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=86.54 E-value=0.43 Score=47.71 Aligned_cols=14 Identities=64% Similarity=1.018 Sum_probs=12.9
Q ss_pred eEEEEcCCCcchhH
Q psy3476 56 VVIIAGDTGCGKST 69 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt 69 (1417)
+++|+|++||||||
T Consensus 1 vI~I~G~~gsGKST 14 (121)
T PF13207_consen 1 VIIISGPPGSGKST 14 (121)
T ss_dssp EEEEEESTTSSHHH
T ss_pred CEEEECCCCCCHHH
Confidence 57999999999997
|
... |
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=86.50 E-value=2.6 Score=53.53 Aligned_cols=72 Identities=17% Similarity=0.254 Sum_probs=60.1
Q ss_pred EEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecc-----hhhcc-CCcCCeEE
Q psy3476 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN-----IAETS-ITIDGIRF 501 (1417)
Q Consensus 428 iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATn-----Iae~G-IdIP~V~~ 501 (1417)
+||++||++-+.++++.+..+.....++.+..++||.+...|...++. | ..|||+|+ .++++ +++..+.+
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVaTPGRllD~i~~~~l~l~~v~~ 177 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKR---G-VDIVVATPGRLLDLIKRGKLDLSGVET 177 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhc---C-CCEEEECccHHHHHHHcCCcchhhcCE
Confidence 999999999999999999887655447889999999999988866665 5 89999997 45555 88888877
Q ss_pred EE
Q psy3476 502 VV 503 (1417)
Q Consensus 502 VI 503 (1417)
+|
T Consensus 178 lV 179 (513)
T COG0513 178 LV 179 (513)
T ss_pred EE
Confidence 66
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.26 E-value=0.42 Score=53.06 Aligned_cols=22 Identities=50% Similarity=0.724 Sum_probs=19.1
Q ss_pred HHhcCCeEEEEcCCCcchhHHH
Q psy3476 50 TVLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt~i 71 (1417)
.+..+.+++|+||.||||||.+
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTlL 45 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTLL 45 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHHH
Confidence 4568899999999999999954
|
|
| >COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=86.18 E-value=2.4 Score=49.99 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=35.2
Q ss_pred CccEEEEccchhHHhhcCCCCCCCCCCCcchh--hHHhhhhhhHHHHHHHHhhh
Q psy3476 125 KTKIVFITEGLLLRQDSGLITDIPGPDASLSS--RERALRHGEIKLLQAIKRKK 176 (1417)
Q Consensus 125 ~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 176 (1417)
+.-|+++-+|..++.|..+.+..|..+..+-. +.+....|.-.|.+.|++.+
T Consensus 93 k~pIlVGGTglY~~aL~~g~~~~p~~~~~~r~~~~~~~~~~g~~~L~~~L~~~D 146 (308)
T COG0324 93 KLPILVGGTGLYLKALLEGLSLLPEADPEVRRRLEAELAELGNDALHAELKKID 146 (308)
T ss_pred CCcEEEccHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHhhC
Confidence 46799999999999999886555433333322 23456777777777777555
|
|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=86.10 E-value=3.5 Score=53.54 Aligned_cols=40 Identities=25% Similarity=0.369 Sum_probs=26.0
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEE
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIIL 356 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIl 356 (1417)
+....++++||||+| .+..+-...+++.+..-+....+|+
T Consensus 117 p~~~~~KViIIDEad--~Lt~~a~naLLK~LEePp~~tvfIL 156 (620)
T PRK14948 117 PVQARWKVYVIDECH--MLSTAAFNALLKTLEEPPPRVVFVL 156 (620)
T ss_pred hhcCCceEEEEECcc--ccCHHHHHHHHHHHhcCCcCeEEEE
Confidence 345678999999999 4445556667777765444444444
|
|
| >TIGR00150 HI0065_YjeE ATPase, YjeE family | Back alignment and domain information |
|---|
Probab=86.01 E-value=1.2 Score=46.24 Aligned_cols=31 Identities=26% Similarity=0.409 Sum_probs=24.2
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcchhHHHHHH
Q psy3476 44 KQEIIDTVLKERVVIIAGDTGCGKSTQIPQY 74 (1417)
Q Consensus 44 q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ 74 (1417)
-+.+.+.+..++++++.|+.|+||||.+-.+
T Consensus 12 ~~~l~~~l~~~~~i~l~G~lGaGKTtl~~~l 42 (133)
T TIGR00150 12 GKAFAKPLDFGTVVLLKGDLGAGKTTLVQGL 42 (133)
T ss_pred HHHHHHhCCCCCEEEEEcCCCCCHHHHHHHH
Confidence 3456667778899999999999999865333
|
Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity. |
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=85.78 E-value=0.7 Score=47.56 Aligned_cols=20 Identities=35% Similarity=0.612 Sum_probs=15.9
Q ss_pred eEEEEcCCCcchhHHHHHHH
Q psy3476 56 VVIIAGDTGCGKSTQIPQYL 75 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ipq~i 75 (1417)
+++++|++||||||.+-++.
T Consensus 1 lii~~G~pgsGKSt~a~~l~ 20 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLA 20 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHH
Confidence 57999999999998554443
|
... |
| >KOG1131|consensus | Back alignment and domain information |
|---|
Probab=85.74 E-value=2 Score=52.74 Aligned_cols=35 Identities=14% Similarity=0.361 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHH
Q psy3476 42 QYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 42 ~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~il 76 (1417)
.|-.++-.++..+.+.++.+|+|+|||..+...+.
T Consensus 23 ~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~ 57 (755)
T KOG1131|consen 23 EYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLII 57 (755)
T ss_pred HHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHH
Confidence 44556777888889999999999999976555443
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=85.50 E-value=2.5 Score=55.74 Aligned_cols=56 Identities=16% Similarity=0.245 Sum_probs=37.2
Q ss_pred HHHHHHHHHhc-----CCeEEEEcCCCcchhHH--HHHHHHHc-CCCcEEEecchHHHHHHHHH
Q psy3476 43 YKQEIIDTVLK-----ERVVIIAGDTGCGKSTQ--IPQYLVQA-GFQRIACTQPRRIACISLSK 98 (1417)
Q Consensus 43 ~q~~il~~i~~-----~~~~iI~a~TGsGKTt~--ipq~ile~-~~~~i~~tqPrr~aa~~~a~ 98 (1417)
+-.+|.+++.+ +++++|.|+||+|||.. +|..++.. ...+|+|.-.+..+-.|+..
T Consensus 33 M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T~~LQeQL~~ 96 (697)
T PRK11747 33 MIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTATVALQEQLVS 96 (697)
T ss_pred HHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHh
Confidence 34456677766 47899999999999975 44433332 23578777777665555543
|
|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=85.47 E-value=0.77 Score=46.90 Aligned_cols=24 Identities=29% Similarity=0.612 Sum_probs=19.7
Q ss_pred cCCeEEEEcCCCcchhHHHHHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~il 76 (1417)
++++++|.||.||||||.+-|++-
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~~~ 24 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQLAK 24 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 467899999999999997666554
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=85.43 E-value=0.49 Score=53.33 Aligned_cols=21 Identities=38% Similarity=0.574 Sum_probs=18.6
Q ss_pred HhcCCeEEEEcCCCcchhHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~i 71 (1417)
+..+..+.|.||+||||||.+
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLL 48 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLL 48 (226)
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 468899999999999999964
|
|
| >TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ | Back alignment and domain information |
|---|
Probab=85.25 E-value=0.92 Score=55.06 Aligned_cols=20 Identities=40% Similarity=0.546 Sum_probs=17.0
Q ss_pred hcCCeEEEEcCCCcchhHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~i 71 (1417)
..+..++|+|||||||||.+
T Consensus 147 ~~~GlilI~G~TGSGKTT~l 166 (372)
T TIGR02525 147 PAAGLGLICGETGSGKSTLA 166 (372)
T ss_pred hcCCEEEEECCCCCCHHHHH
Confidence 35678899999999999965
|
Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524). |
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=85.14 E-value=2 Score=56.56 Aligned_cols=78 Identities=12% Similarity=0.141 Sum_probs=66.5
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecch-hhccCCcCCeEEEE
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI-AETSITIDGIRFVV 503 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnI-ae~GIdIP~V~~VI 503 (1417)
+.+++|.+||+.-+.+.++.++++... .++.+..+||+++..+|..++....+|...|+|+|.. +...+.+.++.+||
T Consensus 310 g~q~lilaPT~~LA~Q~~~~l~~l~~~-~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~lvV 388 (681)
T PRK10917 310 GYQAALMAPTEILAEQHYENLKKLLEP-LGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGLVI 388 (681)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhh-cCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccceEE
Confidence 568999999999999999998876543 3588999999999999999999999999999999974 44467788887766
|
|
| >PRK14970 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=84.99 E-value=2.6 Score=51.13 Aligned_cols=25 Identities=20% Similarity=0.545 Sum_probs=18.7
Q ss_pred HHHHHHhcCC---eEEEEcCCCcchhHH
Q psy3476 46 EIIDTVLKER---VVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 46 ~il~~i~~~~---~~iI~a~TGsGKTt~ 70 (1417)
.+.+.+.+++ .++++||.|+|||+.
T Consensus 28 ~l~~~i~~~~~~~~~L~~G~~G~GKt~~ 55 (367)
T PRK14970 28 TLLNAIENNHLAQALLFCGPRGVGKTTC 55 (367)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHH
Confidence 4555555543 788999999999973
|
|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=84.97 E-value=0.72 Score=55.51 Aligned_cols=20 Identities=35% Similarity=0.715 Sum_probs=17.2
Q ss_pred cCCeEEEEcCCCcchhHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ip 72 (1417)
.+.+++|+|||||||||.+-
T Consensus 121 ~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred cCcEEEEECCCCCCHHHHHH
Confidence 46799999999999999653
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical | Back alignment and domain information |
|---|
Probab=84.69 E-value=1 Score=50.56 Aligned_cols=26 Identities=42% Similarity=0.649 Sum_probs=23.0
Q ss_pred cCCeEEEEcCCCcchhHHHHHHHHHc
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQYLVQA 78 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~ile~ 78 (1417)
.+.+++|.|++|||||+...||+.+.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~ 43 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNG 43 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHh
Confidence 56799999999999999999988764
|
More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C .... |
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=84.64 E-value=2.1 Score=55.77 Aligned_cols=85 Identities=13% Similarity=0.139 Sum_probs=64.4
Q ss_pred HHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhc
Q psy3476 413 LSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAET 492 (1417)
Q Consensus 413 l~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~ 492 (1417)
++.+.+.+ ..++++||.+|....+..+.+.++.... ...+..+||+++..+|.+.+....+|+.+|+|.|--|--
T Consensus 178 l~~i~~~l--~~Gk~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF 252 (665)
T PRK14873 178 AAAAAATL--RAGRGALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF 252 (665)
T ss_pred HHHHHHHH--HcCCeEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE
Confidence 34444444 2367899999999999999999987552 245888999999999999999999999999999964331
Q ss_pred cCCcCCeEEEE
Q psy3476 493 SITIDGIRFVV 503 (1417)
Q Consensus 493 GIdIP~V~~VI 503 (1417)
.-+++...||
T Consensus 253 -aP~~~LgLII 262 (665)
T PRK14873 253 -APVEDLGLVA 262 (665)
T ss_pred -eccCCCCEEE
Confidence 2344544444
|
|
| >PRK14971 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=84.49 E-value=3.2 Score=53.86 Aligned_cols=40 Identities=23% Similarity=0.384 Sum_probs=26.8
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEE
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIIL 356 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIl 356 (1417)
+.+.+++++||||+| .+..+-...+++.+..-+....+|+
T Consensus 117 P~~~~~KVvIIdea~--~Ls~~a~naLLK~LEepp~~tifIL 156 (614)
T PRK14971 117 PQIGKYKIYIIDEVH--MLSQAAFNAFLKTLEEPPSYAIFIL 156 (614)
T ss_pred cccCCcEEEEEECcc--cCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 567789999999999 3444556666666665444444444
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=84.06 E-value=3.8 Score=49.09 Aligned_cols=42 Identities=14% Similarity=0.302 Sum_probs=29.8
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
+....++++||||+| .++..-...++|.+..-+++..+|+.|
T Consensus 102 ~~~~~~kv~iI~~a~--~m~~~aaNaLLK~LEEPp~~~~fiL~t 143 (328)
T PRK05707 102 AQLGGRKVVLIEPAE--AMNRNAANALLKSLEEPSGDTVLLLIS 143 (328)
T ss_pred cccCCCeEEEECChh--hCCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 445678999999999 456667788888777655555555444
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.99 E-value=0.59 Score=55.72 Aligned_cols=22 Identities=36% Similarity=0.755 Sum_probs=18.8
Q ss_pred HHhcCCeEEEEcCCCcchhHHH
Q psy3476 50 TVLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt~i 71 (1417)
.+..+..+++.||+||||||.+
T Consensus 25 ~i~~Gef~vllGPSGcGKSTlL 46 (338)
T COG3839 25 DIEDGEFVVLLGPSGCGKSTLL 46 (338)
T ss_pred EEcCCCEEEEECCCCCCHHHHH
Confidence 3567899999999999999953
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=83.98 E-value=2.2 Score=55.99 Aligned_cols=74 Identities=19% Similarity=0.226 Sum_probs=61.3
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEE
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVV 503 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VI 503 (1417)
++++||.+|+++-+.++.+.+++.. +..+..+||+++..+|.+.+.....|..+|+|+|.-+-. +.+.++.+||
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~f----g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~liV 263 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARF----GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLII 263 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh----CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEEE
Confidence 5689999999999999999987643 357899999999999999999999999999999975432 4566776555
|
|
| >TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB | Back alignment and domain information |
|---|
Probab=83.84 E-value=1.1 Score=57.59 Aligned_cols=31 Identities=19% Similarity=0.459 Sum_probs=21.2
Q ss_pred HHHHHHHHH-HHh-cCCeEEEEcCCCcchhHHH
Q psy3476 41 AQYKQEIID-TVL-KERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 41 ~~~q~~il~-~i~-~~~~~iI~a~TGsGKTt~i 71 (1417)
...+.+.+. .+. .+..++|+|||||||||.+
T Consensus 301 ~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl 333 (564)
T TIGR02538 301 EPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSL 333 (564)
T ss_pred CHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 333333443 343 4678899999999999865
|
This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems. |
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=83.79 E-value=2.7 Score=53.23 Aligned_cols=74 Identities=19% Similarity=0.236 Sum_probs=60.8
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEE
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVV 503 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VI 503 (1417)
++++||.+|+..-+.++++.+++.. +..+..+||+++..+|..++....+|..+|||+|..+-. ..++++.+||
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f----~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lII 98 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRF----GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLII 98 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh----CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEEE
Confidence 5689999999999999999988643 346788999999999999999999999999999976443 4566666555
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.79 E-value=1.3 Score=47.63 Aligned_cols=18 Identities=33% Similarity=0.554 Sum_probs=15.1
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
..++.|.|++||||||+.
T Consensus 3 ~~iI~I~G~~GsGKtTla 20 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLT 20 (182)
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 357889999999999854
|
|
| >KOG2228|consensus | Back alignment and domain information |
|---|
Probab=83.76 E-value=15 Score=43.64 Aligned_cols=42 Identities=21% Similarity=0.345 Sum_probs=26.2
Q ss_pred EEEEecCccc--ccCcchHHHHHHHHhccCCCCcEEEEccCCCH
Q psy3476 322 VLVLDEIHER--HLHGDFLLGVIKCLLHSTAEVKIILMSATINI 363 (1417)
Q Consensus 322 ~VIlDEaHER--~l~~d~ll~llk~l~~~r~~~qvIlmSATln~ 363 (1417)
++|+||+|-- +.+.-.+-.+.......+.++-+|++|--+|.
T Consensus 140 iFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~ 183 (408)
T KOG2228|consen 140 IFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDI 183 (408)
T ss_pred EEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccH
Confidence 5688899821 11222334445555556778888999888873
|
|
| >PF12846 AAA_10: AAA-like domain | Back alignment and domain information |
|---|
Probab=83.72 E-value=1 Score=52.04 Aligned_cols=38 Identities=29% Similarity=0.367 Sum_probs=26.6
Q ss_pred CCeEEEEcCCCcchhHHHHHHHHHcCC--CcEEEecchHH
Q psy3476 54 ERVVIIAGDTGCGKSTQIPQYLVQAGF--QRIACTQPRRI 91 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ipq~ile~~~--~~i~~tqPrr~ 91 (1417)
|.+++|.|+||||||+.+-..+.+... ..+++.-|...
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~g~ 40 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPKGD 40 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCCch
Confidence 568899999999999987655543221 45666677633
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.72 E-value=0.64 Score=52.78 Aligned_cols=22 Identities=50% Similarity=0.782 Sum_probs=18.9
Q ss_pred HHhcCCeEEEEcCCCcchhHHH
Q psy3476 50 TVLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt~i 71 (1417)
.+..+.++.|.||+||||||.+
T Consensus 25 ~v~~GEfvsilGpSGcGKSTLL 46 (248)
T COG1116 25 SVEKGEFVAILGPSGCGKSTLL 46 (248)
T ss_pred EECCCCEEEEECCCCCCHHHHH
Confidence 3468899999999999999953
|
|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=83.61 E-value=2.8 Score=44.90 Aligned_cols=44 Identities=20% Similarity=0.318 Sum_probs=33.5
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCC
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATI 361 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATl 361 (1417)
.-..++++|||||| .+..+...+++|.+..-+.+..+|+.+-..
T Consensus 99 ~~~~~KviiI~~ad--~l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 99 SEGKYKVIIIDEAD--KLTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp TTSSSEEEEEETGG--GS-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred hcCCceEEEeehHh--hhhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 34578999999999 566677888899888777788777776554
|
... |
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=83.53 E-value=0.89 Score=48.98 Aligned_cols=18 Identities=39% Similarity=0.743 Sum_probs=15.5
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
++.++|.||+||||||++
T Consensus 1 g~ii~l~G~~GsGKsTl~ 18 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLV 18 (180)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 467899999999999854
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length | Back alignment and domain information |
|---|
Probab=83.49 E-value=7.5 Score=44.05 Aligned_cols=88 Identities=13% Similarity=0.245 Sum_probs=53.6
Q ss_pred HHHhcCCCcHHHHHHHHHHHhc---CCeEEEEcCCCcchhHHHHHH---HHHcCCCcEEEecchHHHHHHHHHHHHHHHc
Q psy3476 32 RETQNSLPVAQYKQEIIDTVLK---ERVVIIAGDTGCGKSTQIPQY---LVQAGFQRIACTQPRRIACISLSKRVAYETL 105 (1417)
Q Consensus 32 ~~~r~~lp~~~~q~~il~~i~~---~~~~iI~a~TGsGKTt~ipq~---ile~~~~~i~~tqPrr~aa~~~a~rva~e~~ 105 (1417)
.+...++=+.+.|.++...+.+ +++.+.+.-+|.|||+.|.-. ++.++..=+.+.-|+-++ .+...-+...++
T Consensus 16 ~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVpk~Ll-~q~~~~L~~~lg 94 (229)
T PF12340_consen 16 FEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVPKALL-EQMRQMLRSRLG 94 (229)
T ss_pred HHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcCHHHH-HHHHHHHHHHHH
Confidence 3455677788889999888875 468999999999999975433 233443334455555433 333444444444
Q ss_pred cccCCeEEEEEeeccc
Q psy3476 106 SQYSNLVGYQIRFEKH 121 (1417)
Q Consensus 106 ~~~g~~vGy~ir~e~~ 121 (1417)
.-+|..| |.+.|+..
T Consensus 95 ~l~~r~i-~~lpFsR~ 109 (229)
T PF12340_consen 95 GLLNRRI-YHLPFSRS 109 (229)
T ss_pred HHhCCee-EEecccCC
Confidence 4344433 56666544
|
There are two conserved sequence motifs: LLE and NMG. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=83.32 E-value=1.9 Score=54.05 Aligned_cols=52 Identities=21% Similarity=0.272 Sum_probs=33.2
Q ss_pred cCCeEEEEcCCCcchhHHHHHHH----HHcCCCc--EEEecchHHHHHHHHHHHHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQYL----VQAGFQR--IACTQPRRIACISLSKRVAYET 104 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~i----le~~~~~--i~~tqPrr~aa~~~a~rva~e~ 104 (1417)
.+.++.++||||+||||.+.... .+.|..+ ++-+-+-|+++..-.+.++..+
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~Aeil 312 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKIL 312 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHh
Confidence 45789999999999999765443 3344333 3444566777665555555543
|
|
| >TIGR02533 type_II_gspE general secretory pathway protein E | Back alignment and domain information |
|---|
Probab=83.29 E-value=1.2 Score=56.01 Aligned_cols=32 Identities=19% Similarity=0.371 Sum_probs=21.4
Q ss_pred HHHHHHHHHHH-h-cCCeEEEEcCCCcchhHHHH
Q psy3476 41 AQYKQEIIDTV-L-KERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 41 ~~~q~~il~~i-~-~~~~~iI~a~TGsGKTt~ip 72 (1417)
...+.+.+..+ . .+..++|+|||||||||.+-
T Consensus 227 ~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 227 SPELLSRFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred CHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 34444444433 3 34588999999999999653
|
This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis. |
| >PHA02244 ATPase-like protein | Back alignment and domain information |
|---|
Probab=83.28 E-value=2 Score=51.87 Aligned_cols=30 Identities=23% Similarity=0.296 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCcchhHHH
Q psy3476 42 QYKQEIIDTVLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 42 ~~q~~il~~i~~~~~~iI~a~TGsGKTt~i 71 (1417)
.....+...+..+..++|.||||||||+.+
T Consensus 107 ~~~~ri~r~l~~~~PVLL~GppGtGKTtLA 136 (383)
T PHA02244 107 YETADIAKIVNANIPVFLKGGAGSGKNHIA 136 (383)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCHHHHH
Confidence 344566777888999999999999999744
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=83.27 E-value=2.5 Score=55.96 Aligned_cols=68 Identities=16% Similarity=0.244 Sum_probs=57.7
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEE-ecCCCCHHHHHHHhccCCCCCceEEEecchh
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLP-LHSTLSLEEQDRVFHYAPEGLRKCIVSTNIA 490 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~-LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIa 490 (1417)
..++++++-+||..-+.++++.|.++.+....+.+.. +||.|+.++++.+.+++.+|..+|+|+|+-.
T Consensus 123 ~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~F 191 (1187)
T COG1110 123 KKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQF 191 (1187)
T ss_pred hcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHH
Confidence 4467899999999999999999998776544344433 9999999999999999999999999999854
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=83.20 E-value=1 Score=49.49 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=19.4
Q ss_pred CCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
+.++++.||+|+||||.+.+++..
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~ 25 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYN 25 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHH
Confidence 457899999999999977666554
|
|
| >PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A | Back alignment and domain information |
|---|
Probab=83.11 E-value=1.4 Score=51.36 Aligned_cols=32 Identities=28% Similarity=0.579 Sum_probs=24.6
Q ss_pred HHHH-HHhcCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 46 EIID-TVLKERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 46 ~il~-~i~~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
.+++ .+..++.++++||||||||..+-.++.+
T Consensus 24 ~ll~~l~~~~~pvLl~G~~GtGKT~li~~~l~~ 56 (272)
T PF12775_consen 24 YLLDLLLSNGRPVLLVGPSGTGKTSLIQNFLSS 56 (272)
T ss_dssp HHHHHHHHCTEEEEEESSTTSSHHHHHHHHHHC
T ss_pred HHHHHHHHcCCcEEEECCCCCchhHHHHhhhcc
Confidence 3444 3457789999999999999988777644
|
|
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=82.95 E-value=0.98 Score=49.80 Aligned_cols=20 Identities=30% Similarity=0.665 Sum_probs=17.1
Q ss_pred hcCCeEEEEcCCCcchhHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~i 71 (1417)
..++.++|.||+||||||++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~ 22 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLV 22 (205)
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 35789999999999999854
|
|
| >COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=82.82 E-value=0.84 Score=51.84 Aligned_cols=22 Identities=50% Similarity=0.747 Sum_probs=18.1
Q ss_pred HhcCCeEEEEcCCCcchhHHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~ip 72 (1417)
+.+...+||+|+|||||||...
T Consensus 124 ~~kRGLviiVGaTGSGKSTtmA 145 (375)
T COG5008 124 LAKRGLVIIVGATGSGKSTTMA 145 (375)
T ss_pred cccCceEEEECCCCCCchhhHH
Confidence 4567799999999999998543
|
|
| >TIGR01650 PD_CobS cobaltochelatase, CobS subunit | Back alignment and domain information |
|---|
Probab=82.81 E-value=1.9 Score=51.23 Aligned_cols=28 Identities=36% Similarity=0.510 Sum_probs=23.0
Q ss_pred HHHHHHHhcCCeEEEEcCCCcchhHHHH
Q psy3476 45 QEIIDTVLKERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 45 ~~il~~i~~~~~~iI~a~TGsGKTt~ip 72 (1417)
..++..+..++.++|.|++|||||+.+-
T Consensus 55 ~~vl~~l~~~~~ilL~G~pGtGKTtla~ 82 (327)
T TIGR01650 55 KAICAGFAYDRRVMVQGYHGTGKSTHIE 82 (327)
T ss_pred HHHHHHHhcCCcEEEEeCCCChHHHHHH
Confidence 3477777788999999999999997443
|
This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model. |
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=82.66 E-value=2.5 Score=49.80 Aligned_cols=40 Identities=25% Similarity=0.444 Sum_probs=29.0
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
..++.+||||||| .+..+-...+++.+..-+.+..+|+.+
T Consensus 107 ~~~~kviiidead--~mt~~A~nallk~lEep~~~~~~il~~ 146 (325)
T COG0470 107 EGGYKVVIIDEAD--KLTEDAANALLKTLEEPPKNTRFILIT 146 (325)
T ss_pred CCCceEEEeCcHH--HHhHHHHHHHHHHhccCCCCeEEEEEc
Confidence 4678999999999 555566777777776666666666654
|
|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=82.60 E-value=2.4 Score=55.45 Aligned_cols=52 Identities=12% Similarity=0.109 Sum_probs=33.9
Q ss_pred HHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC---CCcEEEecchHHHHHHHH
Q psy3476 46 EIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACISLS 97 (1417)
Q Consensus 46 ~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~---~~~i~~tqPrr~aa~~~a 97 (1417)
.+.+++.+++.++|.||||+|||.....+.+..+ ..++++..+++..--|+-
T Consensus 26 ~v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~ 80 (654)
T COG1199 26 AVAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLL 80 (654)
T ss_pred HHHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHHHH
Confidence 3446667788899999999999987655554433 145666656654444443
|
|
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=82.39 E-value=1.8 Score=55.64 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=20.0
Q ss_pred HHHHHH-hcCCeEEEEcCCCcchhHHH
Q psy3476 46 EIIDTV-LKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 46 ~il~~i-~~~~~~iI~a~TGsGKTt~i 71 (1417)
++++.+ ..+.+++|+|+|||||||.+
T Consensus 248 ~l~~~l~~~~~~ILIsG~TGSGKTTll 274 (602)
T PRK13764 248 KLKERLEERAEGILIAGAPGAGKSTFA 274 (602)
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHH
Confidence 445544 34678999999999999965
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=82.35 E-value=1 Score=48.55 Aligned_cols=22 Identities=32% Similarity=0.564 Sum_probs=18.8
Q ss_pred eEEEEcCCCcchhHHHHHHHHH
Q psy3476 56 VVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ipq~ile 77 (1417)
.++|.||+|||||+...+++.+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~ 22 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYA 22 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 3789999999999988877765
|
A related protein is found in archaea. |
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=82.31 E-value=9.2 Score=46.93 Aligned_cols=43 Identities=19% Similarity=0.121 Sum_probs=24.3
Q ss_pred CccEEEEecCcccccCcchHHHHHHHHhccCCCC-cEEEEccCC
Q psy3476 319 SYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV-KIILMSATI 361 (1417)
Q Consensus 319 ~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~-qvIlmSATl 361 (1417)
++++++||.++-..-.......+...+...+..- |+|+.|-..
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~ 218 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRP 218 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCC
Confidence 6788999999833333234555555555555444 555555433
|
|
| >PLN02840 tRNA dimethylallyltransferase | Back alignment and domain information |
|---|
Probab=82.28 E-value=4.9 Score=49.50 Aligned_cols=28 Identities=29% Similarity=0.210 Sum_probs=21.2
Q ss_pred CCccEEEEccchhHHhhcCCCCCCCCCC
Q psy3476 124 EKTKIVFITEGLLLRQDSGLITDIPGPD 151 (1417)
Q Consensus 124 ~~t~I~~~T~g~llr~l~~d~~~~~~~~ 151 (1417)
.+..|+++-+|..++.+..+...+|.++
T Consensus 110 gkiPIvVGGTGlYl~aLl~G~~~~p~~~ 137 (421)
T PLN02840 110 GRVPIVAGGTGLYLRWYIYGKPDVPKSS 137 (421)
T ss_pred CCCEEEEcCccHHHHHHhcCCCCCCCCC
Confidence 3456999999999999998855555443
|
|
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=82.24 E-value=6.7 Score=48.70 Aligned_cols=49 Identities=22% Similarity=0.276 Sum_probs=32.5
Q ss_pred CeEEEEcCCCcchhHHHHHH---HHHc-CC-CcEEEecchHHHHHHHHHHHHHH
Q psy3476 55 RVVIIAGDTGCGKSTQIPQY---LVQA-GF-QRIACTQPRRIACISLSKRVAYE 103 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ipq~---ile~-~~-~~i~~tqPrr~aa~~~a~rva~e 103 (1417)
.+++++|++||||||.+..+ +.+. +. .-++.+-++|.+|..-.+.++..
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~ 154 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQ 154 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhh
Confidence 47889999999999975543 3344 43 24666778888776444444443
|
|
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=82.16 E-value=1.1 Score=52.33 Aligned_cols=32 Identities=22% Similarity=0.396 Sum_probs=21.4
Q ss_pred CCcHHHHHHHHHHH------hcCCeEEEEcCCCcchhH
Q psy3476 38 LPVAQYKQEIIDTV------LKERVVIIAGDTGCGKST 69 (1417)
Q Consensus 38 lp~~~~q~~il~~i------~~~~~~iI~a~TGsGKTt 69 (1417)
..+|.|-.++-..- .+..++++.||||||||.
T Consensus 75 VAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTl 112 (408)
T COG1219 75 VAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTL 112 (408)
T ss_pred eeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHH
Confidence 44566655554321 233588999999999994
|
|
| >PRK11773 uvrD DNA-dependent helicase II; Provisional | Back alignment and domain information |
|---|
Probab=82.11 E-value=2.6 Score=55.80 Aligned_cols=64 Identities=14% Similarity=0.196 Sum_probs=46.6
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHH---HHHHH-cCC--CcEEEecchHHHHHHHHHHHHHHHc
Q psy3476 40 VAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIP---QYLVQ-AGF--QRIACTQPRRIACISLSKRVAYETL 105 (1417)
Q Consensus 40 ~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ip---q~ile-~~~--~~i~~tqPrr~aa~~~a~rva~e~~ 105 (1417)
+.+.|.+++.. ....++|.|..|||||+.+. .++++ .+. .+|+++--++-||..+-+|+.+..+
T Consensus 10 Ln~~Q~~av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 10 LNDKQREAVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred cCHHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 34567777664 34677889999999998754 34554 343 4788888888899999998877654
|
|
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=82.02 E-value=0.86 Score=45.64 Aligned_cols=14 Identities=43% Similarity=0.601 Sum_probs=12.5
Q ss_pred EEEEcCCCcchhHH
Q psy3476 57 VIIAGDTGCGKSTQ 70 (1417)
Q Consensus 57 ~iI~a~TGsGKTt~ 70 (1417)
++|.|++||||||.
T Consensus 1 I~i~G~~GsGKtTi 14 (129)
T PF13238_consen 1 IGISGIPGSGKTTI 14 (129)
T ss_dssp EEEEESTTSSHHHH
T ss_pred CEEECCCCCCHHHH
Confidence 58999999999984
|
... |
| >COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=82.01 E-value=1.3 Score=52.54 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=24.5
Q ss_pred HHHHHhcCCeEEEEcCCCcchhHHHHHHH
Q psy3476 47 IIDTVLKERVVIIAGDTGCGKSTQIPQYL 75 (1417)
Q Consensus 47 il~~i~~~~~~iI~a~TGsGKTt~ipq~i 75 (1417)
+..++..++.++|+|+|||||||.+-..+
T Consensus 136 L~~~ie~~~siii~G~t~sGKTt~lnall 164 (312)
T COG0630 136 LWLAIEARKSIIICGGTASGKTTLLNALL 164 (312)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHH
Confidence 77788899999999999999999654433
|
|
| >TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family | Back alignment and domain information |
|---|
Probab=81.94 E-value=1 Score=51.14 Aligned_cols=27 Identities=33% Similarity=0.534 Sum_probs=23.7
Q ss_pred hcCCeEEEEcCCCcchhHHHHHHHHHc
Q psy3476 52 LKERVVIIAGDTGCGKSTQIPQYLVQA 78 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ipq~ile~ 78 (1417)
..+.+++|.|++|||||+...||+++.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~ 45 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNG 45 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999998864
|
Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga. |
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=81.88 E-value=1.2 Score=46.59 Aligned_cols=49 Identities=24% Similarity=0.336 Sum_probs=30.5
Q ss_pred EEEEecCcccccCcch-----HHHHHHHHhcc--CCCCcEEEEccCCCHHHHHHHh
Q psy3476 322 VLVLDEIHERHLHGDF-----LLGVIKCLLHS--TAEVKIILMSATINIELFHTYF 370 (1417)
Q Consensus 322 ~VIlDEaHER~l~~d~-----ll~llk~l~~~--r~~~qvIlmSATln~~~~~~~f 370 (1417)
++|||=+||-...... ....+..+... .++.++++.|.+-....+..++
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~ 139 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRL 139 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhc
Confidence 3788888755443322 33344444433 6788888888776666677777
|
|
| >COG3973 Superfamily I DNA and RNA helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.78 E-value=2.6 Score=53.00 Aligned_cols=63 Identities=25% Similarity=0.352 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCcchhHHHHH---HHHHcCC-----CcEEEecchHHHHHHHHHHHHHHHcc
Q psy3476 42 QYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQ---YLVQAGF-----QRIACTQPRRIACISLSKRVAYETLS 106 (1417)
Q Consensus 42 ~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq---~ile~~~-----~~i~~tqPrr~aa~~~a~rva~e~~~ 106 (1417)
..|++|+.. ..++++||+|..||||||...+ |++-... ..|++.-|-|+-. +-..+|-=|+|+
T Consensus 215 kEQneIIR~-ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFl-eYis~VLPeLGe 285 (747)
T COG3973 215 KEQNEIIRF-EKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFL-EYISRVLPELGE 285 (747)
T ss_pred HhHHHHHhc-cCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHH-HHHHHhchhhcc
Confidence 456666654 4678999999999999998664 3432211 2499999998763 333456566654
|
|
| >cd00984 DnaB_C DnaB helicase C terminal domain | Back alignment and domain information |
|---|
Probab=81.74 E-value=0.97 Score=51.16 Aligned_cols=30 Identities=17% Similarity=0.177 Sum_probs=23.6
Q ss_pred HHHHhcCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 48 IDTVLKERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 48 l~~i~~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
+.-+..+++++|.|+||+|||+.+.|++..
T Consensus 7 ~~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~ 36 (242)
T cd00984 7 TGGLQPGDLIIIAARPSMGKTAFALNIAEN 36 (242)
T ss_pred hcCCCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 334567889999999999999877666554
|
The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=81.65 E-value=0.78 Score=46.95 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=18.2
Q ss_pred hcCCeEEEEcCCCcchhHHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ip 72 (1417)
..++.+.|.|+.||||||.+-
T Consensus 9 ~~g~~~~i~G~nGsGKStLl~ 29 (137)
T PF00005_consen 9 KPGEIVAIVGPNGSGKSTLLK 29 (137)
T ss_dssp ETTSEEEEEESTTSSHHHHHH
T ss_pred cCCCEEEEEccCCCcccccee
Confidence 568899999999999999653
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >TIGR01074 rep ATP-dependent DNA helicase Rep | Back alignment and domain information |
|---|
Probab=81.63 E-value=3 Score=54.79 Aligned_cols=62 Identities=26% Similarity=0.386 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhcCCeEEEEcCCCcchhHHHHH---HHHH-cCC--CcEEEecchHHHHHHHHHHHHHHHc
Q psy3476 42 QYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQ---YLVQ-AGF--QRIACTQPRRIACISLSKRVAYETL 105 (1417)
Q Consensus 42 ~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq---~ile-~~~--~~i~~tqPrr~aa~~~a~rva~e~~ 105 (1417)
+.|.+++.. ....++|.|..|||||+.+.. ++++ .+. .+|+++-.++-||..+-+|+.+.++
T Consensus 4 ~~Q~~av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 4 PQQQEAVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred HHHHHHHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 456677654 456789999999999987654 4444 343 4688877778888899999887664
|
Designed to identify rep members of the uvrD/rep subfamily. |
| >TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family | Back alignment and domain information |
|---|
Probab=81.58 E-value=1.1 Score=51.87 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=22.5
Q ss_pred hcCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
..+.+++|.|++|||||+...|++.+
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~ 59 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVT 59 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 35789999999999999988888775
|
This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles. |
| >TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Probab=81.48 E-value=9.4 Score=45.77 Aligned_cols=40 Identities=28% Similarity=0.412 Sum_probs=24.7
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEE
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIIL 356 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIl 356 (1417)
+...+.++|||||+| .+..+....+++.+...+++..+|+
T Consensus 113 p~~~~~~vviidea~--~l~~~~~~~Ll~~le~~~~~~~lIl 152 (355)
T TIGR02397 113 PSSGKYKVYIIDEVH--MLSKSAFNALLKTLEEPPEHVVFIL 152 (355)
T ss_pred cccCCceEEEEeChh--hcCHHHHHHHHHHHhCCccceeEEE
Confidence 456678899999999 3344445556666644344444444
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. |
| >cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU) | Back alignment and domain information |
|---|
Probab=81.43 E-value=1.7 Score=46.91 Aligned_cols=47 Identities=15% Similarity=0.254 Sum_probs=33.6
Q ss_pred EEEEcCCCcchhHHHHHHHHHcCCCcEEEecchHHHHHHHHHHHHHHH
Q psy3476 57 VIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYET 104 (1417)
Q Consensus 57 ~iI~a~TGsGKTt~ipq~ile~~~~~i~~tqPrr~aa~~~a~rva~e~ 104 (1417)
++|.|++|||||+...+++.+.+ .++++...-+..-..+.+|+....
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~-~~~~y~at~~~~d~em~~rI~~H~ 48 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELG-GPVTYIATAEAFDDEMAERIARHR 48 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcC-CCeEEEEccCcCCHHHHHHHHHHH
Confidence 68999999999999999987744 455555444444566777766543
|
CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape. |
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=81.23 E-value=1.2 Score=45.87 Aligned_cols=14 Identities=43% Similarity=0.790 Sum_probs=12.7
Q ss_pred eEEEEcCCCcchhH
Q psy3476 56 VVIIAGDTGCGKST 69 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt 69 (1417)
.+++.||+|||||+
T Consensus 1 ~vlL~G~~G~GKt~ 14 (139)
T PF07728_consen 1 PVLLVGPPGTGKTT 14 (139)
T ss_dssp EEEEEESSSSSHHH
T ss_pred CEEEECCCCCCHHH
Confidence 47999999999996
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >KOG1970|consensus | Back alignment and domain information |
|---|
Probab=81.21 E-value=1.3 Score=54.99 Aligned_cols=19 Identities=42% Similarity=1.017 Sum_probs=16.6
Q ss_pred cCCeEEEEcCCCcchhHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~i 71 (1417)
.+++++|+||+||||||.+
T Consensus 109 ~~~iLLltGPsGcGKSTtv 127 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTV 127 (634)
T ss_pred CceEEEEeCCCCCCchhHH
Confidence 5679999999999999854
|
|
| >PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2 | Back alignment and domain information |
|---|
Probab=81.06 E-value=2.6 Score=45.85 Aligned_cols=19 Identities=42% Similarity=0.733 Sum_probs=16.0
Q ss_pred cCCeEEEEcCCCcchhHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~i 71 (1417)
+++.+||+||+||||||..
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~ 19 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLA 19 (183)
T ss_dssp SSSEEEEESSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3678999999999999743
|
7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A .... |
| >PRK14530 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=80.91 E-value=1.5 Score=48.92 Aligned_cols=18 Identities=33% Similarity=0.619 Sum_probs=15.4
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
+..++|.|++||||||+.
T Consensus 3 ~~~I~i~G~pGsGKsT~~ 20 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQS 20 (215)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 557899999999999854
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=80.80 E-value=7.1 Score=52.64 Aligned_cols=14 Identities=36% Similarity=0.819 Sum_probs=12.8
Q ss_pred eEEEEcCCCcchhH
Q psy3476 56 VVIIAGDTGCGKST 69 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt 69 (1417)
++++.||||+|||.
T Consensus 598 ~~lf~Gp~GvGKT~ 611 (852)
T TIGR03345 598 VFLLVGPSGVGKTE 611 (852)
T ss_pred EEEEECCCCCCHHH
Confidence 58999999999996
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >TIGR01075 uvrD DNA helicase II | Back alignment and domain information |
|---|
Probab=80.36 E-value=2.7 Score=55.65 Aligned_cols=63 Identities=13% Similarity=0.216 Sum_probs=45.7
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCcchhHHHH---HHHHHc-CC--CcEEEecchHHHHHHHHHHHHHHHc
Q psy3476 41 AQYKQEIIDTVLKERVVIIAGDTGCGKSTQIP---QYLVQA-GF--QRIACTQPRRIACISLSKRVAYETL 105 (1417)
Q Consensus 41 ~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ip---q~ile~-~~--~~i~~tqPrr~aa~~~a~rva~e~~ 105 (1417)
.+.|.+++.. ....++|.|..|||||+.+. .++++. +. .+|+++--++-||..+.+|+.+..+
T Consensus 6 n~~Q~~av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 6 NDKQREAVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred CHHHHHHHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 4557777654 34577999999999998754 345543 43 4788888888888888888877654
|
Designed to identify uvrD members of the uvrD/rep subfamily. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.36 E-value=1.1 Score=49.15 Aligned_cols=21 Identities=38% Similarity=0.825 Sum_probs=18.8
Q ss_pred HHhcCCeEEEEcCCCcchhHH
Q psy3476 50 TVLKERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt~ 70 (1417)
.|.+++.+++.||.||||||.
T Consensus 27 ~ia~ge~vv~lGpSGcGKTTL 47 (259)
T COG4525 27 TIASGELVVVLGPSGCGKTTL 47 (259)
T ss_pred eecCCCEEEEEcCCCccHHHH
Confidence 457899999999999999985
|
|
| >PRK04301 radA DNA repair and recombination protein RadA; Validated | Back alignment and domain information |
|---|
Probab=80.31 E-value=3 Score=49.57 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=22.0
Q ss_pred HhcCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
+..+.++.|+|++|||||+...|++..
T Consensus 99 i~~g~vtei~G~~GsGKT~l~~~~~~~ 125 (317)
T PRK04301 99 IETQSITEFYGEFGSGKTQICHQLAVN 125 (317)
T ss_pred ccCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 345789999999999999877777654
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=80.23 E-value=1.1 Score=44.64 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=19.0
Q ss_pred hcCCeEEEEcCCCcchhHHHHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQIPQY 74 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ipq~ 74 (1417)
..++.+.|.||+||||||.+...
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l 35 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALEL 35 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHh
Confidence 45788999999999999976543
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >PLN02796 D-glycerate 3-kinase | Back alignment and domain information |
|---|
Probab=80.18 E-value=3.6 Score=49.35 Aligned_cols=16 Identities=44% Similarity=0.839 Sum_probs=13.6
Q ss_pred eEEEEcCCCcchhHHH
Q psy3476 56 VVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~i 71 (1417)
++-|+|++||||||.+
T Consensus 102 iIGI~G~sGSGKSTLa 117 (347)
T PLN02796 102 VIGISAPQGCGKTTLV 117 (347)
T ss_pred EEEEECCCCCcHHHHH
Confidence 3788999999999853
|
|
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=80.18 E-value=4.1 Score=52.28 Aligned_cols=40 Identities=23% Similarity=0.382 Sum_probs=25.5
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEE
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIIL 356 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIl 356 (1417)
+...+++++||||+| .+.......+++.+..-++...+|+
T Consensus 115 p~~~~~KVvIIDEa~--~Ls~~a~naLLK~LEepp~~~vfI~ 154 (563)
T PRK06647 115 PASSRYRVYIIDEVH--MLSNSAFNALLKTIEEPPPYIVFIF 154 (563)
T ss_pred hhcCCCEEEEEEChh--hcCHHHHHHHHHhhccCCCCEEEEE
Confidence 456789999999999 4444455666666654333443443
|
|
| >cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Probab=80.08 E-value=1.3 Score=45.98 Aligned_cols=15 Identities=40% Similarity=0.884 Sum_probs=13.0
Q ss_pred EEEEcCCCcchhHHH
Q psy3476 57 VIIAGDTGCGKSTQI 71 (1417)
Q Consensus 57 ~iI~a~TGsGKTt~i 71 (1417)
++|+|||||||||++
T Consensus 2 i~i~GpsGsGKstl~ 16 (137)
T cd00071 2 IVLSGPSGVGKSTLL 16 (137)
T ss_pred EEEECCCCCCHHHHH
Confidence 689999999999844
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. |
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=80.07 E-value=2 Score=43.08 Aligned_cols=14 Identities=36% Similarity=0.767 Sum_probs=12.4
Q ss_pred EEEEcCCCcchhHH
Q psy3476 57 VIIAGDTGCGKSTQ 70 (1417)
Q Consensus 57 ~iI~a~TGsGKTt~ 70 (1417)
++|.||.|||||+.
T Consensus 1 ill~G~~G~GKT~l 14 (132)
T PF00004_consen 1 ILLHGPPGTGKTTL 14 (132)
T ss_dssp EEEESSTTSSHHHH
T ss_pred CEEECcCCCCeeHH
Confidence 58999999999973
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=80.05 E-value=6 Score=49.53 Aligned_cols=39 Identities=28% Similarity=0.490 Sum_probs=23.8
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEE
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILM 357 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlm 357 (1417)
..++++|||||+| .+..+....+++.+..-++...+|+.
T Consensus 119 ~~~~kvvIIdead--~lt~~~~n~LLk~lEep~~~~~~Il~ 157 (451)
T PRK06305 119 KSRYKIYIIDEVH--MLTKEAFNSLLKTLEEPPQHVKFFLA 157 (451)
T ss_pred cCCCEEEEEecHH--hhCHHHHHHHHHHhhcCCCCceEEEE
Confidence 4578899999999 33333445556555554444445543
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=80.02 E-value=1.2 Score=48.70 Aligned_cols=18 Identities=22% Similarity=0.634 Sum_probs=15.6
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
+.+++|.||+||||||.+
T Consensus 2 g~~i~l~G~sGsGKsTl~ 19 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLL 19 (186)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 568899999999999854
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=80.01 E-value=1.1 Score=49.78 Aligned_cols=20 Identities=45% Similarity=0.843 Sum_probs=17.9
Q ss_pred HhcCCeEEEEcCCCcchhHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~ 70 (1417)
|.+++++-+.||.||||||.
T Consensus 30 i~~~~VTAlIGPSGcGKST~ 49 (253)
T COG1117 30 IPKNKVTALIGPSGCGKSTL 49 (253)
T ss_pred ccCCceEEEECCCCcCHHHH
Confidence 45889999999999999984
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1417 | ||||
| 3kx2_B | 767 | Crystal Structure Of Prp43p In Complex With Adp Len | 3e-65 | ||
| 3kx2_B | 767 | Crystal Structure Of Prp43p In Complex With Adp Len | 3e-12 | ||
| 3kx2_B | 767 | Crystal Structure Of Prp43p In Complex With Adp Len | 2e-08 | ||
| 2xau_A | 773 | Crystal Structure Of The Prp43p Deah-Box Rna Helica | 3e-65 | ||
| 2xau_A | 773 | Crystal Structure Of The Prp43p Deah-Box Rna Helica | 3e-12 | ||
| 2xau_A | 773 | Crystal Structure Of The Prp43p Deah-Box Rna Helica | 2e-08 | ||
| 3llm_A | 235 | Crystal Structure Analysis Of A Rna Helicase Length | 1e-17 | ||
| 3llm_A | 235 | Crystal Structure Analysis Of A Rna Helicase Length | 2e-05 | ||
| 3llm_A | 235 | Crystal Structure Analysis Of A Rna Helicase Length | 2e-05 | ||
| 3i4u_A | 270 | Crystal Structure Analysis Of A Helicase Associated | 2e-08 |
| >pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp Length = 767 | Back alignment and structure |
|
| >pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp Length = 767 | Back alignment and structure |
|
| >pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp Length = 767 | Back alignment and structure |
|
| >pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In Complex With Adp Length = 773 | Back alignment and structure |
|
| >pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In Complex With Adp Length = 773 | Back alignment and structure |
|
| >pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In Complex With Adp Length = 773 | Back alignment and structure |
|
| >pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase Length = 235 | Back alignment and structure |
|
| >pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase Length = 235 | Back alignment and structure |
|
| >pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase Length = 235 | Back alignment and structure |
|
| >pdb|3I4U|A Chain A, Crystal Structure Analysis Of A Helicase Associated Domain Length = 270 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Length = 773 | Back alignment and structure |
|---|
Score = 417 bits (1074), Expect = e-129
Identities = 153/456 (33%), Positives = 237/456 (51%), Gaps = 25/456 (5%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
E D+ LS Y ++LDE HER L D L+G++K ++ ++KII+MSAT++ E F Y
Sbjct: 199 EAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRY 258
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIR-ILSIIDKKYPRTERGDV 428
FN A ++ VPGR YP++L Y P + D Y+ + + + + E GD+
Sbjct: 259 FND-APLLAVPGRTYPVELYYTPEFQRD-----------YLDSAIRTVLQIHATEEAGDI 306
Query: 429 LIFMSGISEISSIVRAAQEYNEKSQGW------IVLPLHSTLSLEEQDRVFHYAPEGL-- 480
L+F++G EI VR ++ V PL+ +L +Q R+F APE
Sbjct: 307 LLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNG 366
Query: 481 ---RKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKG 537
RK ++STNIAETS+TIDGI +VVD G K+ Y+ ++ +L ISKASA+QR G
Sbjct: 367 RPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAG 426
Query: 538 RAGRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAP 596
RAGRT PG C+RLY+EE + L E S PEI R ++ S +L L +G+ D+ F F++ P
Sbjct: 427 RAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPP 486
Query: 597 PAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLA 656
E + ++ L +D + +T LGR S P+D L ML+ F +L++
Sbjct: 487 APETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIV 546
Query: 657 AVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRR 716
A+LSV + F + A+ GD +T+LN Y + + KWC+
Sbjct: 547 AMLSVPNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDH 606
Query: 717 GIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDAS 752
+ + +RSQ ++++ L + ++
Sbjct: 607 YLNYRSLSAADNIRSQLERLMNRYNLELNTTDYESP 642
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Length = 773 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 1e-31
Identities = 44/125 (35%), Positives = 72/125 (57%), Gaps = 5/125 (4%)
Query: 19 FKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLV-- 76
F +E + I + + LPV + E + ++++ G+TG GK+TQIPQ+++
Sbjct: 74 FTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFD 133
Query: 77 ---QAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITE 133
++ACTQPRR+A +S+++RVA E + VGY IRFE KT + ++T+
Sbjct: 134 EMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTD 193
Query: 134 GLLLR 138
G+LLR
Sbjct: 194 GMLLR 198
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Length = 773 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 6e-28
Identities = 40/114 (35%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 809 RTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAE 867
RT PG C+RLY+EE + L E S PEI R ++ S +L L +G+ D+ F F++ P E
Sbjct: 430 RTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPE 489
Query: 868 NIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML 921
+ ++ L +D + +T LGR S P+D L ML+ F +L
Sbjct: 490 TMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEIL 543
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Length = 773 | Back alignment and structure |
|---|
Score = 80.1 bits (198), Expect = 3e-15
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
D+ LS Y ++LDE HER L D L+G++K ++ ++KII+MSAT++ E F YFN
Sbjct: 202 EDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFN 260
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Length = 773 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 3e-05
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 230 TDNFLSSYDILILDEVHERHLYGDFLLGVI 259
D+ LS Y +ILDE HER L D L+G++
Sbjct: 202 EDHDLSRYSCIILDEAHERTLATDILMGLL 231
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Length = 773 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 2e-04
Identities = 41/279 (14%), Positives = 81/279 (29%), Gaps = 84/279 (30%)
Query: 1030 GAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN----FVHHSEE 1085
+D + +T LGR S P+D L ML+ F +L + L+ F+ +++
Sbjct: 502 ACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKD 561
Query: 1086 EEE-EEAGERLESMDA---------NEVEFRLKHDPKQVQVAADNFLSSYDVLVLDEIHE 1135
++ ++A D + + ++ + D++L+ + D I
Sbjct: 562 KKRADDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRS 621
Query: 1136 RHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKDLLSGSTARSHKDVT 1195
+ L ++ R +L +
Sbjct: 622 Q------LERLMN----------------------------RYNLELNTTDYESPKYFDN 647
Query: 1196 ILKVILASGLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLRISEDD 1255
I K + SG + QVA KD V +HP +V +
Sbjct: 648 IRKALA-SGFFMQVAKKRSGAKGYI------TVKDNQDVLIHPSTVLGHDAE-------- 692
Query: 1256 IVDPPPGLKLPGRNVISSKHQLLVYMSLLETSKPFLVNC 1294
++Y + TSK ++
Sbjct: 693 ---------------------WVIYNEFVLTSKNYIRTV 710
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 | Back alignment and structure |
|---|
Score = 182 bits (463), Expect = 1e-49
Identities = 51/303 (16%), Positives = 96/303 (31%), Gaps = 52/303 (17%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
+ + + +Y+++V+DE H G I E I M+AT
Sbjct: 101 RLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYIS-TRVEMGEAAAIFMTATP-------- 151
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
PG P PI +++R E+ + I +G +
Sbjct: 152 ----------PGSTDPFPQSNSPIEDIEREIPERSWNTGFDWI---------TDYQGKTV 192
Query: 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489
F+ I + I ++ G V+ L E + +V+T+I
Sbjct: 193 WFVPSIKAGNDIANCLRK-----SGKRVIQLSRKTFDTEYPK----TKLTDWDFVVTTDI 243
Query: 490 AETSITIDGIRFVVDSGKVKE--MSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
+E V+D + + + D ++ ++ ASA QR+GR GR
Sbjct: 244 SEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQED 302
Query: 548 YRLYS----EEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIES 603
+ + A ++ ++ LL + G + E + I+
Sbjct: 303 DQYVFSGDPLKNDEDHAHWTEAKM--------LLDNIYTPEGIIPTLFGPEREKTQAIDG 354
Query: 604 SVR 606
R
Sbjct: 355 EFR 357
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 | Back alignment and structure |
|---|
Score = 82.6 bits (204), Expect = 2e-16
Identities = 15/106 (14%), Positives = 34/106 (32%), Gaps = 14/106 (13%)
Query: 37 SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIAC 93
P + ++I K+R+ I+ G GK+ +I +V+ R P R+
Sbjct: 5 GEPDYEVDEDIFR---KKRLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVA 61
Query: 94 ISLSKRVAYETLSQYSNLVGYQ-IRFEKHRREKTKIVFITEGLLLR 138
+ + + + YQ + + + +
Sbjct: 62 AEMEEALRGLP-------IRYQTPAVKSDHTGREIVDLMCHATFTT 100
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 | Back alignment and structure |
|---|
Score = 48.7 bits (116), Expect = 9e-06
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 1116 VAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATI 1166
+ + + +Y+++V+DE H G I E I M+AT
Sbjct: 102 LLSSTRVPNYNLIVMDEAHFTDPCSVAARGYIS-TRVEMGEAAAIFMTATP 151
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618 | Back alignment and structure |
|---|
Score = 182 bits (464), Expect = 2e-48
Identities = 52/305 (17%), Positives = 95/305 (31%), Gaps = 52/305 (17%)
Query: 308 TVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFH 367
T + + + +Y+++V+DE H G I E I M+AT
Sbjct: 266 TTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYIS-TRVEMGEAAAIFMTATP------ 318
Query: 368 TYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427
PG P PI +++R E+ + I +G
Sbjct: 319 ------------PGSTDPFPQSNSPIEDIEREIPERSWNTGFDWI---------TDYQGK 357
Query: 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST 487
+ F+ I A + G V+ L E + +V+T
Sbjct: 358 TVWFVPSIKAG---NDIANCLRKS--GKRVIQLSRKTFDTEYPK----TKLTDWDFVVTT 408
Query: 488 NIAETSITIDGIRFVVDSGKVKE--MSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG 545
+I+E V+D + + + D ++ ++ ASA QR+GR GR
Sbjct: 409 DISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQ 467
Query: 546 VCYRLYS----EEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENI 601
+ + A ++ ++ LL + G + E + I
Sbjct: 468 EDDQYVFSGDPLKNDEDHAHWTEAKM--------LLDNIYTPEGIIPTLFGPEREKTQAI 519
Query: 602 ESSVR 606
+ R
Sbjct: 520 DGEFR 524
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618 | Back alignment and structure |
|---|
Score = 75.8 bits (186), Expect = 6e-14
Identities = 16/110 (14%), Positives = 33/110 (30%), Gaps = 11/110 (10%)
Query: 33 ETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPR 89
TQ + D K+R+ I+ G GK+ +I +V+ R P
Sbjct: 165 ITQAERIGEPDYEVDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPT 224
Query: 90 RIACISLSKRVAYETLSQYSNLVGYQ-IRFEKHRREKTKIVFITEGLLLR 138
R+ + + + + YQ + + + +
Sbjct: 225 RVVAAEMEEALRGLP-------IRYQTPAVKSDHTGREIVDLMCHATFTT 267
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 2e-05
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATI 1166
+ + +Y+++V+DE H G I E I M+AT
Sbjct: 271 SSTRVPNYNLIVMDEAHFTDPCSVAARGYIS-TRVEMGEAAAIFMTATP 318
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Length = 235 | Back alignment and structure |
|---|
Score = 169 bits (430), Expect = 1e-47
Identities = 50/134 (37%), Positives = 79/134 (58%), Gaps = 9/134 (6%)
Query: 19 FKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA 78
Q E+ L I + + LPV +++ EI++ + + VVII G TGCGK+TQ+PQ+++
Sbjct: 41 MYQLEQDHDLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDD 100
Query: 79 GFQ-------RIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFE-KHRREKTKIVF 130
Q I TQPRRI+ +S+++RVA+E + GY +RFE R I+F
Sbjct: 101 FIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIMF 160
Query: 131 ITEGLLLRQ-DSGL 143
T G+LLR+ ++G+
Sbjct: 161 CTVGVLLRKLEAGI 174
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Length = 235 | Back alignment and structure |
|---|
Score = 87.3 bits (217), Expect = 3e-19
Identities = 26/66 (39%), Positives = 43/66 (65%), Gaps = 1/66 (1%)
Query: 314 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 373
+ + +++DEIHER ++ DFLL V++ ++ + EV+I+LMSATI+ +F YF
Sbjct: 171 EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFN- 229
Query: 374 AKIIKV 379
II+V
Sbjct: 230 CPIIEV 235
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Length = 235 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 5e-19
Identities = 23/58 (39%), Positives = 39/58 (67%)
Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFN 1176
+ + +++DEIHER ++ DFLL V++ ++ + EV+I+LMSATI+ +F YF
Sbjct: 171 EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF 228
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Length = 235 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 3e-05
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 231 DNFLSSYDILILDEVHERHLYGDFLLGVI 259
+ + +I+DE+HER + DFLL V+
Sbjct: 171 EAGIRGISHVIVDEIHERDINTDFLLVVL 199
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431 | Back alignment and structure |
|---|
Score = 175 bits (444), Expect = 3e-47
Identities = 55/327 (16%), Positives = 98/327 (29%), Gaps = 57/327 (17%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
++ + +Y++ ++DE H G I+ S + I M+AT
Sbjct: 84 KLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIE-TRVSMGDAGAIFMTATP-------- 134
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
PG PI++ + +K + I G +
Sbjct: 135 ----------PGTTEAFPPSNSPIIDEETRIPDK----AWNSGYEWI-----TEFDGRTV 175
Query: 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489
F+ I + + I Q+ G VL L+ E + +++T+I
Sbjct: 176 WFVHSIKQGAEIGTCLQK-----AGKKVLYLNRKTFESEYPK----CKSEKWDFVITTDI 226
Query: 490 AETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRT--GPGVC 547
+E V+D K + + ++S I+ ASA QR+GR GR G
Sbjct: 227 SEMGANFK-ADRVIDPRKTIK-PILLDGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDI 284
Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRS 607
Y S E R + L + + +
Sbjct: 285 YAYSGNVSSDNEGHVSWTEAR--------MLLDNVHVQGGVVAQLYTPE-----REKTEA 331
Query: 608 LTQHGAIDSKERVTSLGRFLS--DLPV 632
+ + +R + DLPV
Sbjct: 332 YEGEFKLKTNQRKV-FSELIRTGDLPV 357
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431 | Back alignment and structure |
|---|
Score = 78.3 bits (193), Expect = 5e-15
Identities = 13/90 (14%), Positives = 28/90 (31%), Gaps = 11/90 (12%)
Query: 53 KERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIACISLSKRVAYETLSQYS 109
K + ++ G GK+ ++ LV+ R P R+ + + + E
Sbjct: 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALRGEP----- 55
Query: 110 NLVGYQ-IRFEKHRREKTKIVFITEGLLLR 138
+ Y + R + F+
Sbjct: 56 --IRYMTPAVQSERTGNEIVDFMCHSTFTM 83
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 1e-05
Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATIN 1167
+ +Y++ ++DE H G I+ S + I M+AT
Sbjct: 87 QGVRVPNYNLYIMDEAHFLDPASVAARGYIE-TRVSMGDAGAIFMTATPP 135
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459 | Back alignment and structure |
|---|
Score = 171 bits (436), Expect = 5e-46
Identities = 69/335 (20%), Positives = 112/335 (33%), Gaps = 61/335 (18%)
Query: 304 LLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINI 363
L H + + N + +Y++ V+DE H G I E I M+AT
Sbjct: 100 LTH---RLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIA-TKVELGEAAAIFMTATP-- 153
Query: 364 ELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRT 423
PG P PI +L ++ Y I
Sbjct: 154 ----------------PGTTDPFPDSNAPIHDLQDEIPDRAWSSGYEWI---------TE 188
Query: 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKC 483
G + F++ + + I Q +K V+ L+ E + G
Sbjct: 189 YAGKTVWFVASVKMGNEIAMCLQRAGKK-----VIQLNRKSYDTEYPK----CKNGDWDF 239
Query: 484 IVSTNIAETSITIDGIRFVVDSGK--VKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGR 541
+++T+I+E V+D K + + ++ I+ ASA QR+GR GR
Sbjct: 240 VITTDISEMGANFG-ASRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGR 298
Query: 542 T--GPGVCYRLYSE--EQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPP 597
G Y E S LA ++ +I +L + M G V + E
Sbjct: 299 NPNQVGDEYHYGGATSEDDSNLAHWTEAKI--------MLDNIHMPNGLVAQLYGPEREK 350
Query: 598 AENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPV 632
A ++ R + K+ L R +DLPV
Sbjct: 351 AFTMDGEYRLRG-----EEKKNFLELLR-TADLPV 379
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459 | Back alignment and structure |
|---|
Score = 78.7 bits (194), Expect = 4e-15
Identities = 17/101 (16%), Positives = 36/101 (35%), Gaps = 11/101 (10%)
Query: 42 QYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIACISLSK 98
Q + + + K ++ ++ G GK+ +I +++ R A P R+
Sbjct: 9 QMGRGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVA----A 64
Query: 99 RVAYETLSQYSNLVGYQIRF-EKHRREKTKIVFITEGLLLR 138
+A E L V YQ ++ + + + L
Sbjct: 65 EMA-EALRGLP--VRYQTSAVQREHQGNEIVDVMCHATLTH 102
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459 | Back alignment and structure |
|---|
Score = 46.0 bits (109), Expect = 7e-05
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Query: 1117 AADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATI 1166
+ N + +Y++ V+DE H G I E I M+AT
Sbjct: 105 MSPNRVPNYNLFVMDEAHFTDPASIAARGYIA-TKVELGEAAAIFMTATP 153
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Length = 673 | Back alignment and structure |
|---|
Score = 169 bits (429), Expect = 1e-43
Identities = 46/295 (15%), Positives = 91/295 (30%), Gaps = 46/295 (15%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
+ + + +Y++ V+DE H G I + + E I M+AT
Sbjct: 323 RLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVEAG-EAAAIFMTATP-------- 373
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
PG P P+ S ++ + I G +
Sbjct: 374 ----------PGTSDPFPDTNSPV----HDVSSEIPDRAWSSGFEWI-----TDYAGKTV 414
Query: 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489
F++ + + I + Q G V+ L+ + D + G +++T+I
Sbjct: 415 WFVASVKMSNEIAQCLQR-----AGKRVIQLNR----KSYDTEYPKCKNGDWDFVITTDI 465
Query: 490 AETSITIDGIRFVVDSG--KVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
+E R V+D + + ++ I+ ASA QR+GR GR +
Sbjct: 466 SEMGANFGASR-VIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIG 524
Query: 548 YRLYSEEQYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIE 602
+ S + ++ +L + L + +
Sbjct: 525 DEYHYGGGTS-----EDDTMLAHWTEAKILLDN-IHLPNGLVAQLYGPERDKTYT 573
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Length = 673 | Back alignment and structure |
|---|
Score = 70.0 bits (171), Expect = 4e-12
Identities = 14/132 (10%), Positives = 41/132 (31%), Gaps = 17/132 (12%)
Query: 12 LLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQI 71
L + S +++ + +P A + + K ++ ++ G GK+ +I
Sbjct: 203 LYGNGVILGNGAYVSAIVQGERVEEPVPEAY----NPEMLKKRQLTVLDLHPGAGKTRRI 258
Query: 72 PQYLVQAGF---QRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQI--RFEKHRREKT 126
+++ R A P R+ +++ + + ++
Sbjct: 259 LPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRGL--------PVRYLTPAVQREHSGNE 310
Query: 127 KIVFITEGLLLR 138
+ + L
Sbjct: 311 IVDVMCHATLTH 322
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Length = 673 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 5e-04
Identities = 12/49 (24%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
Query: 1117 AADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSAT 1165
+ + +Y++ V+DE H G I + + E I M+AT
Sbjct: 325 MSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVEAG-EAAAIFMTAT 372
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 | Back alignment and structure |
|---|
Score = 161 bits (410), Expect = 1e-42
Identities = 45/263 (17%), Positives = 84/263 (31%), Gaps = 43/263 (16%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
+ + +++V+++DE H G + E ILM+AT
Sbjct: 90 RMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARAN-ESATILMTATP-------- 140
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
PG I ++ + P+ I ++
Sbjct: 141 ----------PGTSDEFPHSNGEIEDVQT----DIPSEPWNTGHDWI-----LADKRPTA 181
Query: 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489
F+ I + + + ++ G V+ L+ E + I++T+I
Sbjct: 182 WFLPSIRAANVMAASLRK-----AGKSVVVLNRKTFEREYPT----IKQKKPDFILATDI 232
Query: 490 AETSITIDGIRFVVDSG-KVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRT--GPGV 546
AE + + V+D K + D K++ IS +SA QR+GR GR G
Sbjct: 233 AEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGD 291
Query: 547 CYRLYSE--EQYSLLAEYSTPEI 567
Y E + + +
Sbjct: 292 SYYYSEPTSENNAHHVCWLEASM 314
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 9e-14
Identities = 13/95 (13%), Positives = 28/95 (29%), Gaps = 12/95 (12%)
Query: 49 DTVLKER-VVIIAGDTGCGKSTQIPQYLVQAGF---QRIACTQPRRIACISLSKRVAYET 104
+LK+ ++ G GK+ + ++ R P R+ + +
Sbjct: 2 SHMLKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLD 61
Query: 105 LSQYSNLVGYQIR-FEKHRREKTKIVFITEGLLLR 138
V + + F H + I + L
Sbjct: 62 -------VKFHTQAFSAHGSGREVIDAMCHATLTY 89
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 4e-05
Identities = 11/52 (21%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 1116 VAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATIN 1167
+ + +++V+++DE H G + E ILM+AT
Sbjct: 91 MLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARAN-ESATILMTATPP 141
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 | Back alignment and structure |
|---|
Score = 163 bits (413), Expect = 1e-41
Identities = 40/247 (16%), Positives = 70/247 (28%), Gaps = 44/247 (17%)
Query: 314 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI 373
+YD+++ DE H +G + + ++L +AT + + N
Sbjct: 313 GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPPGSVTVPHPNIE 372
Query: 374 AKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMS 433
+ G P + PI G LIF
Sbjct: 373 EVALSNTGE-IPFYGKAIPIEA---------------------------IRGGRHLIFCH 404
Query: 434 GISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETS 493
+ + G + + L + P +V+T+ T
Sbjct: 405 SKKKCDELAAKLSG-----LGINAVAYYRGLDVSVI-------PTIGDVVVVATDALMTG 452
Query: 494 ITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFW---ISKASAEQRKGRAGRTGPGVCYRL 550
T D V+D + D + + E S QR+GR GR G+ +
Sbjct: 453 YTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRRGIYRFV 511
Query: 551 YSEEQYS 557
E+ S
Sbjct: 512 TPGERPS 518
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 | Back alignment and structure |
|---|
Score = 86.2 bits (213), Expect = 4e-17
Identities = 19/112 (16%), Positives = 35/112 (31%), Gaps = 6/112 (5%)
Query: 29 MKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQP 88
++ ET PV +V + TG GKST++P G ++ P
Sbjct: 207 VESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQG-YKVLVLNP 265
Query: 89 RRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQD 140
A + ++ + + +R + + T G L
Sbjct: 266 SVAATLGFGAYMSKAHGIDPN--IRTGVRT---ITTGAPVTYSTYGKFLADG 312
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 5e-06
Identities = 9/48 (18%), Positives = 19/48 (39%)
Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATI 1166
+YD+++ DE H +G + + ++L +AT
Sbjct: 313 GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATP 360
|
| >3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} Length = 270 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 2e-27
Identities = 38/157 (24%), Positives = 69/157 (43%), Gaps = 6/157 (3%)
Query: 582 MGLGDVRKFPFLEAP-PAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKML 640
MG F P E + +++ L GA+D + +T LGR +++ P++ L KML
Sbjct: 1 MGDRGPE-FELGTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKML 59
Query: 641 VFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWL 700
+ + +L++ ++LSVQ+ F + + + + GD LT+L Y W
Sbjct: 60 IMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSW- 118
Query: 701 GVKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQFKQVL 737
K+ S WC I+ + +R Q ++
Sbjct: 119 ---KNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIM 152
|
| >3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} Length = 270 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 5e-10
Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Query: 850 MGLGDVRKFPFLEAP-PAENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKML 908
MG F P E + +++ L GA+D + +T LGR +++ P++ L KML
Sbjct: 1 MGDRGPE-FELGTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKML 59
Query: 909 VFGSMFH 915
+
Sbjct: 60 IMSVHLG 66
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 80.7 bits (198), Expect = 3e-15
Identities = 116/733 (15%), Positives = 204/733 (27%), Gaps = 231/733 (31%)
Query: 288 HERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLH 347
H H H DF G + + V D F+ ++D + + D ++
Sbjct: 1 HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDC--------KDVQ-DMPKSIL----- 46
Query: 348 STAEVKIILMSATINIE----LFHTYFNRIAKIIK--VPGRLYPIQLEYHPIVELDRTKS 401
S E+ I+MS + LF T ++ ++++ V L ++ Y ++ K+
Sbjct: 47 SKEEIDHIIMSKD-AVSGTLRLFWTLLSKQEEMVQKFVEEVL---RINYKFLMS--PIKT 100
Query: 402 EKLDP-GPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPL 460
E+ P + D+ Y D +F ++ R Q Y + L
Sbjct: 101 EQRQPSMMTRMYIEQRDRLY-----NDNQVFAKY-----NVSR-LQPYLK---------L 140
Query: 461 HSTL-SLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKM 519
L L V G K T + +D +M + +
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGK---------TWVALDVCL---SYKVQCKMDFKI---- 184
Query: 520 STLQEFWIS-------KASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRRVSI 572
FW++ + E + + P R L E+RR+
Sbjct: 185 -----FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239
Query: 573 -----DSLL-LSLVC-------MGLG--------DVRKFPFLEAPPAENI--ESSVRSLT 609
+ LL L V L + FL A +I + +LT
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 610 QHGAIDSKERVTSLGRFL----SDLPVDI----PLGKMLVFGSMFHQIDTVLSLAAVLSV 661
E + L ++L DLP ++ P LS+ A
Sbjct: 300 P------DEVKSLLLKYLDCRPQDLPREVLTTNPR---------------RLSIIAESIR 338
Query: 662 QSPFTNRAFRDPDCETARKELES--NHGDPLTVLNAYKEWLGV-KKD-----RVRSKKWC 713
T ++ +C+ +ES N +P + L V + S W
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR-LSVFPPSAHIPTILLSLIWF 397
Query: 714 KRRGIEEQRFYEVTKLRSQFKQVLGDSGLITDIPGPDASLSSR---ERALR-HGEIKLLQ 769
+ V KL SL + E + +
Sbjct: 398 DVIKSDVMVV--VNKLHKY-------------------SLVEKQPKESTISIPS---IYL 433
Query: 770 AIKRKKAEEAPKRRKMLKADNAYEIEEEEEEEEGERLE------SRTGPGVCYRLYSEEQ 823
+K K E R ++ + Y I + + ++ S G + L + E
Sbjct: 434 ELKVKLENEYALHRSIV---DHYNIPKTFDSDDLIPPYLDQYFYSHIG----HHLKNIEH 486
Query: 824 YSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEA-----PPAENIESSVRSL-- 876
+ + R V +D F FLE A N S+ +
Sbjct: 487 PERMTLF-----RMVFLD----------------FRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 877 ---------TQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLAL 927
+ V + FL + ++ K D LL +AL
Sbjct: 526 QLKFYKPYICDNDPKYE-RLVNAILDFLPKIEENLICSKYT---------D---LLRIAL 572
Query: 928 NF---GAIDSKER 937
+ +
Sbjct: 573 MAEDEAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 62.9 bits (152), Expect = 8e-10
Identities = 88/546 (16%), Positives = 162/546 (29%), Gaps = 173/546 (31%)
Query: 5 LYEEWK-------LLLRTYLDFKQK-----EKFS--------TLMKIRETQNSLPVAQYK 44
L K ++ R Y++ + + + F+ +K+R+ L A+
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN- 152
Query: 45 QEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQ--RIACTQPRRIACISLSK-RVA 101
V+I G G GK+ + ++ C +I ++L
Sbjct: 153 ------------VLIDGVLGSGKTW-----VALDVCLSYKVQCKMDFKIFWLNLKNCNSP 195
Query: 102 YETLSQYSNLV-----GYQIRFEKHRREKTKIVFITEGL--LLRQ----DSGLITDIPGP 150
L L+ + R + K +I I L LL+ + L+
Sbjct: 196 ETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL---- 251
Query: 151 DASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIEEEEEEEEGERLESM 210
+ + A K+L R K L A I + E
Sbjct: 252 NVQNAKAWNAFNLS-CKIL-LTTRFKQVTD-----FLSAATTTHISLDHHSMTLTPDEVK 304
Query: 211 D--ANEVEFRLKHDPKQVQ-----------------VAT-DNFL------------SSYD 238
++ R + P++V +AT DN+ SS +
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 239 ILILDEVHERHLYGD---FLLGV-ISPPLHCGGEIVAADYFLSSYDV-LVLDEIHER--- 290
+L E R ++ F I L ++ D + DV +V++++H+
Sbjct: 365 VLEPAEY--RKMFDRLSVFPPSAHIPTILLS---LIWFD--VIKSDVMVVVNKLHKYSLV 417
Query: 291 ---------HLHGDFLLGVIKCL----LHSTVEVAADNFLSSYDVLVLDEIHERHLHGDF 337
+ +L +K LH ++ V N ++D D++ +L F
Sbjct: 418 EKQPKESTISIPSIYLELKVKLENEYALHRSI-VDHYNIPKTFD---SDDLIPPYLDQYF 473
Query: 338 L--LGVIKCLLHSTAEVKIILMSATINIELFHTYFNRI--------AKIIKVPGRLYPIQ 387
+G H + + E T F + KI
Sbjct: 474 YSHIG-----HH---------LKNIEHPERM-TLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 388 LEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTER--GDVLIFMSGISEI------S 439
+ + +L K PYI P+ ER +L F+ I E +
Sbjct: 519 SILNTLQQLKFYK-------PYIC------DNDPKYERLVNAILDFLPKIEENLICSKYT 565
Query: 440 SIVRAA 445
++R A
Sbjct: 566 DLLRIA 571
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.7 bits (128), Expect = 4e-07
Identities = 105/676 (15%), Positives = 199/676 (29%), Gaps = 202/676 (29%)
Query: 724 YEVTKLRSQFKQVLGD--SGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPK 781
+E + + Q+K +L + + D + L EI + I K A
Sbjct: 9 FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKS-ILSKEEIDHI--IMSKDAVSGTL 65
Query: 782 R---RKMLKADNAYE--IEEEEEEEEG---ERLESRT-GPGVCYRLYSEEQYSLLAEYST 832
R + K + + +EE +++ P + R+Y E++ L Y+
Sbjct: 66 RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL---YND 122
Query: 833 PEI---RRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHG--------- 880
++ VS L L R+ LE PA+N+ G
Sbjct: 123 NQVFAKYNVSRLQPYLKL--------RQ-ALLELRPAKNV-------LIDGVLGSGKTWV 166
Query: 881 AID--SKERVT----------TLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALN 928
A+D +V L + P + +ML + +QID + +
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLKN--CNSPETVL--EMLQ--KLLYQIDPNWT---SRS 217
Query: 929 FGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLD--------LALNFG 980
+ + K R+ S+ L L P L L+L A N
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCL------------LVLLNVQNAKAWNAFNLS 265
Query: 981 AIDSKERVTSLGRFLSD-----LPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSK 1035
K +T+ + ++D I L + LL L+
Sbjct: 266 ---CKILLTTRFKQVTDFLSAATTTHISLDHHS---MTLTPDEVKSLLLKYLDCRP---- 315
Query: 1036 ERVTSLGRFLSDLPVDI----PLGKMLVFGSMFHQ-IDTMLLLDLALNFVHHSEEEEEEE 1090
DLP ++ P ++ + + T + H ++
Sbjct: 316 ----------QDLPREVLTTNPR-RLSIIAESIRDGLAT-------WDNWKHVNCDKLTT 357
Query: 1091 AGER-LESMDANEVEFRLKHD----PKQVQVAAD------NFLSSYDV-LVLDEIHER-- 1136
E L ++ E ++ P + + DV +V++++H+
Sbjct: 358 IIESSLNVLEPAEYR-KMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416
Query: 1137 ----------HLHGDFLLGVIKCL----LHSTAEVKIILMSATINIELFHT--------- 1173
+ +L +K LH + I+ I
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALH-----RSIVDHYNIPKTFDSDDLIPPYLDQ 471
Query: 1174 YF-NRIAKDLLSGSTARSHKDVTIL------------KVILASGLYPQVAIGDEFNTSET 1220
YF + I L + +T+ K+ S A G NT +
Sbjct: 472 YFYSHIGHHL---KNIEHPERMTLFRMVFLDFRFLEQKIRHDS--TAWNASGSILNTLQQ 526
Query: 1221 VKEALFHCKDKGFVSLHPFSVFTSQPDVLRISEDDIVDPPPGLKLPGRNVISSKHQLLVY 1280
+K K ++ + P R+ + I+D L N+I SK+ L+
Sbjct: 527 LK------FYKPYICDN-------DPKYERL-VNAILD---FLPKIEENLICSKYTDLLR 569
Query: 1281 MSLLETSKPFLVNCLR 1296
++L+ + +
Sbjct: 570 IALMAEDEAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 2e-05
Identities = 54/417 (12%), Positives = 111/417 (26%), Gaps = 160/417 (38%)
Query: 1081 HHSEEEEEEEAGERLESMDANEVEFRLKHDPKQ-VQVAADNFLSSYDVLVLDEIHERHLH 1139
HH + E GE ++ K + V D F+ ++D + +
Sbjct: 1 HHHHHHMDFETGE-------------HQYQYKDILSVFEDAFVDNFDC--------KDVQ 39
Query: 1140 GDFLLGVIKCLLHSTAEVKIILMSATIN------IELFHTYFNRIAKDLLSGSTARSHK- 1192
D ++ S E+ I+MS + + + + ++K
Sbjct: 40 -DMPKSIL-----SKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF 93
Query: 1193 -------------DVTILKVILASGLYPQVAIGDEFNTS-----ETVKEALFHCKDKGFV 1234
+T + + LY + ++N S +++AL + V
Sbjct: 94 LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 1235 SLH------------------------PFSVF-------TSQPDVLRISED--------- 1254
+ F +F S VL + +
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW 213
Query: 1255 -DIVDPPPGLKLPGRNVISSKHQLLVYM----SLL--------ETSKPFLVNCLRMPALQ 1301
D +KL ++ + +LL LL + F ++C +
Sbjct: 214 TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC------K 267
Query: 1302 TLLL----------------FSSAIHTNSDFT----RLVFDSWIEVFV-----------P 1330
LL S H + T + + +++ P
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327
Query: 1331 L---------QEAKSTADVNQLEHSLTRDLVQFMSSATHLAYSIRRLLAADLKTMYR 1378
++ +T D +H L + S S+ L A+ + M+
Sbjct: 328 RRLSIIAESIRDGLATWD--NWKHVNCDKLTTIIES------SLNVLEPAEYRKMFD 376
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 2e-04
Identities = 97/669 (14%), Positives = 180/669 (26%), Gaps = 232/669 (34%)
Query: 757 ERALRHGEI--KLLQAIKR----KKAEEAPKRRKMLKADNAYEIEEEEEEEEGER----- 805
E ++ +I A K ++ P + +L + I ++ G
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDCKDVQDMP--KSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 806 LESRTGPGVCYRLYSE---EQYSLLA-----EYSTPEIRRVSIDSLLLSLVCMGLGDVRK 857
L S+ V + E Y L E P + L D +
Sbjct: 71 LLSKQEEMV-QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL----YNDNQV 125
Query: 858 FPFLEAPPAENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQI 917
F + ++L + + + V G +L G
Sbjct: 126 FAKYNVSRLQPYLKLRQALLE---LRPAKNVLIDG--------------VLGSGK----- 163
Query: 918 DTMLLLDLALNFGAIDSKE-RV--TSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLD 974
T + LD+ L++ + ++ +L + P + +ML + +QID
Sbjct: 164 -TWVALDVCLSYKVQCKMDFKIFWLNLKN--CNSPETVL--EMLQ--KLLYQIDPNWT-- 214
Query: 975 LALNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLD--------LA 1026
+ + + + K R+ S+ L L P L L+L A
Sbjct: 215 -SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL------------LVLLNVQNAKAWNA 261
Query: 1027 LNFGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTML---LLDLALNFVHHS 1083
N K +T+ RF D S+ H T+ + L L ++
Sbjct: 262 FNLS---CKILLTT--RFKQV--TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 1084 EEEEEEEAGERLESMDANEVEFRLKHDPKQVQVAADNFLSSYDVLVLDEIHERHLHGDFL 1143
++ E L +P
Sbjct: 315 PQDLPREV---------------LTTNP------------------------------RR 329
Query: 1144 LGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKDLLSGSTARSHKDVTILKVILAS 1203
L +I + AT + + + D L+ TI++ L
Sbjct: 330 LSIIAESIRD--------GLATWD------NWKHVNCDKLT----------TIIESSLNV 365
Query: 1204 GLYPQVAIGDEFNTSETVKEALFHCKDKGFVSLHPFSVFTSQPDVLRISEDDIVDPPPGL 1263
L P E+ +F SVF P I P L
Sbjct: 366 -LEP-----AEY-------RKMFD----------RLSVF--PPSA------HI--PTILL 392
Query: 1264 -----KLPGRNVISSKHQLLVYMSLLET-SKPFLVNCLRMPALQTLLLFSS----AIH-- 1311
+ +V+ ++L Y SL+E K + +P++ L A+H
Sbjct: 393 SLIWFDVIKSDVMVVVNKLHKY-SLVEKQPKESTI---SIPSIYLELKVKLENEYALHRS 448
Query: 1312 -TNSDFTRLVFDSWIEVFVPLQEAKSTADVNQLEHSLTRDLVQFMSSATHLAYSIRRLLA 1370
+ FDS +P +H+ + ++ +
Sbjct: 449 IVDHYNIPKTFDSD--DLIPPYL--------------------DQYFYSHIGHHLKNIEH 486
Query: 1371 ADLKTMYRR 1379
+ T++R
Sbjct: 487 PERMTLFRM 495
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1417 | |||
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 100.0 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 100.0 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 100.0 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 100.0 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 100.0 | |
| 3i4u_A | 270 | ATP-dependent RNA helicase DHX8; splicing, ATP-bin | 100.0 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 100.0 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 100.0 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 100.0 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 100.0 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 100.0 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 100.0 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 100.0 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 100.0 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 100.0 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 100.0 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 100.0 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 100.0 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 100.0 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 100.0 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.98 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 99.98 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 99.98 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.97 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 99.97 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.97 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.97 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 99.97 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 99.97 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 99.97 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 99.97 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 99.97 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 99.97 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 99.96 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.96 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.96 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 99.96 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 99.96 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.96 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 99.96 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.96 | |
| 3i4u_A | 270 | ATP-dependent RNA helicase DHX8; splicing, ATP-bin | 99.95 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 99.95 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.95 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.95 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.94 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 99.93 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.93 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 99.93 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 99.92 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 99.91 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 99.91 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 99.9 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 99.88 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.88 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 99.88 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.85 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.82 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.81 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.79 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.78 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.77 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.75 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.72 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.71 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.71 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.68 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.67 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.66 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.66 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.65 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 99.65 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.45 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 99.63 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 99.6 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 99.6 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 99.59 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 99.58 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.58 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 99.58 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 99.57 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 99.56 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.56 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 99.54 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 99.53 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 99.53 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 99.52 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 99.47 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 99.47 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 99.35 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 99.21 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 99.19 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 99.17 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 99.14 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 99.12 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 99.02 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 98.85 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 98.81 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.85 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 97.8 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 97.69 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 97.3 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 96.79 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 96.54 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 96.53 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 96.16 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 95.58 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 95.15 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 95.13 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 94.81 | |
| 2o0j_A | 385 | Terminase, DNA packaging protein GP17; nucleotide- | 94.73 | |
| 3cpe_A | 592 | Terminase, DNA packaging protein GP17; large termi | 94.42 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 94.33 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 93.67 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 92.73 | |
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 91.71 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 91.6 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 91.57 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 91.17 | |
| 3lfu_A | 647 | DNA helicase II; SF1 helicase, ATP-binding, DNA da | 91.11 | |
| 2zpa_A | 671 | Uncharacterized protein YPFI; RNA modification enz | 89.99 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 89.88 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 89.73 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 89.57 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 89.1 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 88.07 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 87.8 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 87.28 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 87.01 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 86.82 | |
| 3u4q_A | 1232 | ATP-dependent helicase/nuclease subunit A; helicas | 86.78 | |
| 1uaa_A | 673 | REP helicase, protein (ATP-dependent DNA helicase | 86.66 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 86.42 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 86.4 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 86.07 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 85.91 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 85.75 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 85.67 | |
| 1pjr_A | 724 | PCRA; DNA repair, DNA replication, SOS response, h | 85.61 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 85.48 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 85.1 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 84.99 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 84.87 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 84.85 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 84.64 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 84.57 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 84.43 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 84.12 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 84.03 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 83.75 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 83.72 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 83.45 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 83.41 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 83.31 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 83.27 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 83.05 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 82.67 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 82.49 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 82.19 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 82.17 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 82.02 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 81.9 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 81.32 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 81.29 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 81.26 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 81.26 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 81.04 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 80.88 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 80.78 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 80.78 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 80.62 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 80.43 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 80.43 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 80.42 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 80.27 |
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-81 Score=805.39 Aligned_cols=572 Identities=34% Similarity=0.563 Sum_probs=507.0
Q ss_pred hhhhhhhhchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC-----CcEEEecchHHHH
Q psy3476 19 FKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF-----QRIACTQPRRIAC 93 (1417)
Q Consensus 19 ~~~~~~~~~~~~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~-----~~i~~tqPrr~aa 93 (1417)
|.....-.++.++.+.|..+|++.+|++|...+.++++++|+|||||||||++|+++++.+. .+++|++|+|.+|
T Consensus 74 f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La 153 (773)
T 2xau_A 74 FTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAA 153 (773)
T ss_dssp TTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHH
T ss_pred ccccCCCHHHHHHHHHhhcCChHHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHH
Confidence 44333334567788888899999999999999999999999999999999999999887543 3599999999999
Q ss_pred HHHHHHHHHHHccccCCeEEEEEeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHH
Q psy3476 94 ISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIK 173 (1417)
Q Consensus 94 ~~~a~rva~e~~~~~g~~vGy~ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (1417)
.+++++++.+++..+|..+||.++++......++|+++|+|++++.+..+
T Consensus 154 ~q~~~~l~~~~~~~v~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~------------------------------ 203 (773)
T 2xau_A 154 MSVAQRVAEEMDVKLGEEVGYSIRFENKTSNKTILKYMTDGMLLREAMED------------------------------ 203 (773)
T ss_dssp HHHHHHHHHHTTCCBTTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHS------------------------------
T ss_pred HHHHHHHHHHhCCchhheecceeccccccCCCCCEEEECHHHHHHHHhhC------------------------------
Confidence 99999999999999999999999999888889999999999999865432
Q ss_pred hhhhhhhhHHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhcccccc
Q psy3476 174 RKKAEEAPKRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGD 253 (1417)
Q Consensus 174 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d 253 (1417)
T Consensus 204 -------------------------------------------------------------------------------- 203 (773)
T 2xau_A 204 -------------------------------------------------------------------------------- 203 (773)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ceeeccCCCCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCccccc
Q psy3476 254 FLLGVISPPLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHL 333 (1417)
Q Consensus 254 ~l~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l 333 (1417)
..+.++++|||||+|+|++
T Consensus 204 -------------------------------------------------------------~~l~~~~~lIlDEah~R~l 222 (773)
T 2xau_A 204 -------------------------------------------------------------HDLSRYSCIILDEAHERTL 222 (773)
T ss_dssp -------------------------------------------------------------TTCTTEEEEEECSGGGCCH
T ss_pred -------------------------------------------------------------ccccCCCEEEecCcccccc
Confidence 3467889999999999999
Q ss_pred CcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHH
Q psy3476 334 HGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRIL 413 (1417)
Q Consensus 334 ~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il 413 (1417)
+.+++..+++.+...+++.++|+||||++.+.+.+|| ++++++.++++.+|++++|.+....++ ....+
T Consensus 223 d~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~-~~~~vi~v~gr~~pv~~~~~~~~~~~~----------~~~~l 291 (773)
T 2xau_A 223 ATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYF-NDAPLLAVPGRTYPVELYYTPEFQRDY----------LDSAI 291 (773)
T ss_dssp HHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHT-TSCCEEECCCCCCCEEEECCSSCCSCH----------HHHHH
T ss_pred chHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHh-cCCCcccccCcccceEEEEecCCchhH----------HHHHH
Confidence 9999999999988888899999999999999999999 578899999999999998876543222 22233
Q ss_pred HHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhh------ccCCcEEEEecCCCCHHHHHHHhccCC-----CCCce
Q psy3476 414 SIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNE------KSQGWIVLPLHSTLSLEEQDRVFHYAP-----EGLRK 482 (1417)
Q Consensus 414 ~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~------~~~~~~V~~LHs~Ls~~eR~~v~~~f~-----~G~rk 482 (1417)
..+.+.+....+|++||||+|+++++.+++.|.+... ...++.+.++||+|++++|.++++.|+ +|.++
T Consensus 292 ~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~k 371 (773)
T 2xau_A 292 RTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRK 371 (773)
T ss_dssp HHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEE
T ss_pred HHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceE
Confidence 3333333224578999999999999999999975321 236789999999999999999999999 99999
Q ss_pred EEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHH-HHhhc
Q psy3476 483 CIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQY-SLLAE 561 (1417)
Q Consensus 483 VLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~-~~l~~ 561 (1417)
||||||++|+|||||+|++|||+|+.|.+.||+..++..+...|+|+++|.||+|||||.++|.||+||+++++ ..+.+
T Consensus 372 VlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~ 451 (773)
T 2xau_A 372 VVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIE 451 (773)
T ss_dssp EEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCS
T ss_pred EEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCCCCCEEEEEecHHHhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 57999
Q ss_pred cCCCcccccChHHHHHHHHhhCCCCCcCCCCCCCCCcchhHHHHHHHHhcCCCCCCCCcChhhhhccCCCCChhhHHHHH
Q psy3476 562 YSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLV 641 (1417)
Q Consensus 562 ~~~pEI~r~~L~~~lL~lk~lgi~~~~~f~~l~pP~~~~l~~Al~~L~~lGaId~~~~lT~LG~~ls~lpldp~lak~Ll 641 (1417)
+..|||.+.+|.+++|+++.+|+.++..|+|++||+.+.+..|++.|..+||||.++++|++|+.|+.||++|++||||+
T Consensus 452 ~~~pEi~r~~L~~~~L~l~~~gi~~~~~f~~~~~p~~~~i~~a~~~L~~lgald~~~~lT~lG~~~a~~pl~p~~~~~l~ 531 (773)
T 2xau_A 452 QSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLI 531 (773)
T ss_dssp SCCCGGGGSCCHHHHHHHHHTTCCCGGGCCCSSCCCHHHHHHHHHHHHHTTSBCTTSCBCHHHHHHTTSSSCHHHHHHHH
T ss_pred cCCCccccCcHHHHHHHHHHcCCCChhhccccCCCcHHHHHHHHHHHHHcCCcccCCCcChhhhhhccccCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccCChhhHHHHhhhccCCCccccCCCCChhHHHHHhhcccCCCChHHHHHHHHHHHHhhhhhchHHHHHHHcCCCHH
Q psy3476 642 FGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQ 721 (1417)
Q Consensus 642 ~~~~f~cle~vl~IaA~Lsv~~~F~~~~~~~~~~~~~r~~f~~~~sD~ltlln~f~~w~~~~~~~~~~~~WC~~~~L~~~ 721 (1417)
.|+.++|++++++|+|+|+++++|..|...+++++.+|+.|....|||++++|+|++|.+....+...++||++|||+++
T Consensus 532 ~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~f~~~~~D~~~~l~~~~~~~~~~~~~~~~~~~c~~~~l~~~ 611 (773)
T 2xau_A 532 GSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFAHPDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYR 611 (773)
T ss_dssp HGGGGTCHHHHHHHHHHHTSCCCBCCCTTCHHHHHHHHHTTCCTTBHHHHHHHHHHHHTSHHHHHHCHHHHHHHTTBCHH
T ss_pred hhcccCchhHHHHHHHhcccCCcccCChHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHhccccchHHHHHHHhCCCHH
Confidence 99999999999999999999999999998888888999999999999999999999997653211122789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCcCCCCC--CCChhHHHHHHhcCchHHHHHHH
Q psy3476 722 RFYEVTKLRSQFKQVLGDSGLITDIPGP--DASLSSRERALRHGEIKLLQAIK 772 (1417)
Q Consensus 722 ~L~ei~~lr~QL~~iL~~~gl~~~~~~~--~~~~~s~~ral~~G~~~~L~~l~ 772 (1417)
+|+++.++|+||.++|.+.|+....++. ..+.+.+.+++.+|++++++...
T Consensus 612 ~l~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~~~a~~~ 664 (773)
T 2xau_A 612 SLSAADNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKALASGFFMQVAKKR 664 (773)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCCCTTSTTHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCCCCCCchhhHHHHHHHHHHhChHhheeec
Confidence 9999999999999999999987654332 12346789999999998887554
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-50 Score=521.96 Aligned_cols=553 Identities=16% Similarity=0.115 Sum_probs=374.8
Q ss_pred CcHHHHHHHHHH-HhcCCeEEEEcCCCcchhHHHHHHHHHcC---CCcEEEecchHHHHHHHHHHHH--HHHccccCCeE
Q psy3476 39 PVAQYKQEIIDT-VLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACISLSKRVA--YETLSQYSNLV 112 (1417)
Q Consensus 39 p~~~~q~~il~~-i~~~~~~iI~a~TGsGKTt~ipq~ile~~---~~~i~~tqPrr~aa~~~a~rva--~e~~~~~g~~v 112 (1417)
..+.+|.++++. +.++++++|+||||||||+++++++++.. ..+++|++|+|.+|.++++++. .+.+..+|..+
T Consensus 30 ~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~~ 109 (715)
T 2va8_A 30 KLNPPQTEAVKKGLLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTS 109 (715)
T ss_dssp BCCHHHHHHHHTTTTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEECC
T ss_pred CCCHHHHHHHHHHhcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 568999999998 88999999999999999999999998642 3689999999999999999882 12223333333
Q ss_pred EEEEeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhccccc
Q psy3476 113 GYQIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNA 192 (1417)
Q Consensus 113 Gy~ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 192 (1417)
|+..+.+... ..++|+|+|+|++.+.+..+
T Consensus 110 G~~~~~~~~~-~~~~Iiv~Tpe~l~~~~~~~------------------------------------------------- 139 (715)
T 2va8_A 110 GDYDTDDAWL-KNYDIIITTYEKLDSLWRHR------------------------------------------------- 139 (715)
T ss_dssp SCSSSCCGGG-GGCSEEEECHHHHHHHHHHC-------------------------------------------------
T ss_pred CCCCCchhhc-CCCCEEEEcHHHHHHHHhCC-------------------------------------------------
Confidence 4433433322 37899999999988765322
Q ss_pred hhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCccccc
Q psy3476 193 YEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIVAA 272 (1417)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~~~~ 272 (1417)
T Consensus 140 -------------------------------------------------------------------------------- 139 (715)
T 2va8_A 140 -------------------------------------------------------------------------------- 139 (715)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCC
Q psy3476 273 DYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV 352 (1417)
Q Consensus 273 ~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~ 352 (1417)
..+++++++||+||+|+.. +.++...+...+.+. ++.
T Consensus 140 -----------------------------------------~~~l~~~~~vIiDE~H~l~-~~~~~~~l~~i~~~~-~~~ 176 (715)
T 2va8_A 140 -----------------------------------------PEWLNEVNYFVLDELHYLN-DPERGPVVESVTIRA-KRR 176 (715)
T ss_dssp -----------------------------------------CGGGGGEEEEEECSGGGGG-CTTTHHHHHHHHHHH-HTS
T ss_pred -----------------------------------------hhHhhccCEEEEechhhcC-CcccchHHHHHHHhc-ccC
Confidence 0235578999999999543 323332222222222 289
Q ss_pred cEEEEccCC-CHHHHHHHhccCceEEEeCCcccceeEEeccccc------ccccc--ccCCCCChHHHHHHHHHhhCCCC
Q psy3476 353 KIILMSATI-NIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVE------LDRTK--SEKLDPGPYIRILSIIDKKYPRT 423 (1417)
Q Consensus 353 qvIlmSATl-n~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~------~~~~~--~~~~~~~~~~~il~~l~~~~~~~ 423 (1417)
|+|+||||+ |.+.+++|+ +++.+..++|++|+...+..... ..+.. ...+.. ...+...+.+.+ .
T Consensus 177 ~ii~lSATl~n~~~~~~~l--~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~ 250 (715)
T 2va8_A 177 NLLALSATISNYKQIAKWL--GAEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHG--DDAIIAYTLDSL--S 250 (715)
T ss_dssp EEEEEESCCTTHHHHHHHH--TCEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEES--SSHHHHHHHHHH--T
T ss_pred cEEEEcCCCCCHHHHHHHh--CCCccCCCCCCCCceEEEEecCCcccceeeecCcchhhhccc--chHHHHHHHHHH--h
Confidence 999999999 599999999 47888999999998865532210 00000 000000 012233333333 2
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhc-------------------------------cCCcEEEEecCCCCHHHHHHH
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEK-------------------------------SQGWIVLPLHSTLSLEEQDRV 472 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~-------------------------------~~~~~V~~LHs~Ls~~eR~~v 472 (1417)
.++++||||+|+++++.+++.|.+.... .....+.++||+|+.++|..+
T Consensus 251 ~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v 330 (715)
T 2va8_A 251 KNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLI 330 (715)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHH
Confidence 4689999999999999999999864211 001358999999999999999
Q ss_pred hccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEE
Q psy3476 473 FHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYR 549 (1417)
Q Consensus 473 ~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~ 549 (1417)
++.|++|.++|||||+++++|||+|++++||++ ...||+..+.. ..|+|.+++.||+|||||.| +|.||+
T Consensus 331 ~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~ 403 (715)
T 2va8_A 331 EEGFRQRKIKVIVATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIMEYKQMSGRAGRPGFDQIGESIV 403 (715)
T ss_dssp HHHHHTTCSCEEEECGGGGGSSCCCBSEEEECC----C-----------------CHHHHHHHHTTBCCTTTCSCEEEEE
T ss_pred HHHHHcCCCeEEEEChHHhcccCCCceEEEEeC----CeeccccCCCC---CCcCCHHHHHHHhhhcCCCCCCCCceEEE
Confidence 999999999999999999999999999999995 45677544322 46899999999999999999 899999
Q ss_pred ecCHHH-HHH-hhc--cCCCcccccChHH------HHHHHHhhCCC----CCcCC---CCCC-CCCcchhHHHHHHHHhc
Q psy3476 550 LYSEEQ-YSL-LAE--YSTPEIRRVSIDS------LLLSLVCMGLG----DVRKF---PFLE-APPAENIESSVRSLTQH 611 (1417)
Q Consensus 550 L~t~~~-~~~-l~~--~~~pEI~r~~L~~------~lL~lk~lgi~----~~~~f---~~l~-pP~~~~l~~Al~~L~~l 611 (1417)
++++.+ +.. +.. ...||+.+.++.. .+|.++..|.. ++..| .|+. +|+...++.|++.|.++
T Consensus 404 l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~al~~L~~~ 483 (715)
T 2va8_A 404 VVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVDVYFDRAIRWLLEH 483 (715)
T ss_dssp ECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHT
T ss_pred EeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhhHHHhhcchHHHHHHHHHHHHC
Confidence 998765 333 222 4578888876554 77888887732 22211 3332 44456799999999999
Q ss_pred CCCCCCC---CcChhhhhccCCCCChhhHHHHHhhhcc---CChhhHHHHhhhccCCCccccCCCCChhHHHHHhhccc-
Q psy3476 612 GAIDSKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMF---HQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELES- 684 (1417)
Q Consensus 612 GaId~~~---~lT~LG~~ls~lpldp~lak~Ll~~~~f---~cle~vl~IaA~Lsv~~~F~~~~~~~~~~~~~r~~f~~- 684 (1417)
|+|+.++ .+|++|+.++.+|++|.++++++.+... .|..+++.|+|+.+ .|.....+..+.+..++.+..
T Consensus 484 g~i~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~---e~~~~~~r~~e~~~l~~~~~~~ 560 (715)
T 2va8_A 484 SFIKEEGNTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAFTP---DGPLVSVGRNEEEELIELLEDL 560 (715)
T ss_dssp TSEEECSSEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHHST---TSCCCCCCHHHHHHHHHHHTTC
T ss_pred cCEeecCCeEeeChHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHHhhcCc---ccccCccChHHHHHHHHHHHhc
Confidence 9998764 7999999999999999999999999887 67777777666543 344444444444444333221
Q ss_pred --------CCC--------ChHHHHHHHHHHHHhhhhhchHHHHHHHcCCCHHHHHHHHHHHHHHHH----HHHHCCCCc
Q psy3476 685 --------NHG--------DPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQFKQ----VLGDSGLIT 744 (1417)
Q Consensus 685 --------~~s--------D~ltlln~f~~w~~~~~~~~~~~~WC~~~~L~~~~L~ei~~lr~QL~~----iL~~~gl~~ 744 (1417)
+.. .++-..-+.++|.+. .....+|+++++..+.++.+.+....|.+ ++...|...
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~----~~~~~i~~~y~~~~gdl~~l~~~a~~l~~a~~~i~~~~~~~~ 636 (715)
T 2va8_A 561 DCELLIEEPYEEDEYSLYINALKVALIMKDWMDE----VDEDTILSKYNIGSGDLRNMVETMDWLTYSAYHLSRELKLNE 636 (715)
T ss_dssp SSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTT----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred chhhcccccccccchhhhHHHHHHHHHHHHHHcC----CCHHHHHHHHCCChhhHHHHHHHHHHHHHHHHHHHHHhCcHH
Confidence 000 122223345666532 24567899999999998888775555544 555555421
Q ss_pred CCCCCCCChhHHHHHHhcCchHHHHHHHhhhccccccccccccccc
Q psy3476 745 DIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADN 790 (1417)
Q Consensus 745 ~~~~~~~~~~s~~ral~~G~~~~L~~l~~~~~~~~~r~rk~l~~~~ 790 (1417)
. ........+++.+|-...+..|. +.+ ..|+.|++.-.+.
T Consensus 637 ~----~~~l~~l~~rl~~gv~~e~~~L~-qlp-~i~~~rar~L~~~ 676 (715)
T 2va8_A 637 H----ADKLRILNLRVRDGIKEELLELV-QIS-GVGRKRARLLYNN 676 (715)
T ss_dssp H----HHHHHHHHHHHHHTCCGGGHHHH-TST-TCCHHHHHHHHHT
T ss_pred H----HHHHHHHHHHHHcCCChhhcchh-hCC-CCCHHHHHHHHHc
Confidence 1 11245567788888877777775 333 4556665544433
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-48 Score=496.86 Aligned_cols=526 Identities=18% Similarity=0.181 Sum_probs=376.8
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC--CCcEEEecchHHHHHHHHHHHHHHHccccCCeEEE--
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG--FQRIACTQPRRIACISLSKRVAYETLSQYSNLVGY-- 114 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~--~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy-- 114 (1417)
..+.+|.++++.+.++++++|+||||||||+++++++++.. ..+++|++|+|.+|.++++++. .. ..+|..||.
T Consensus 25 ~l~~~Q~~~i~~i~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~-~~-~~~g~~v~~~~ 102 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFK-KW-EKIGLRIGIST 102 (702)
T ss_dssp CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHT-TT-TTTTCCEEEEC
T ss_pred CCCHHHHHHHHHHhCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHH-HH-HhcCCEEEEEe
Confidence 34677999999999999999999999999999999988653 3689999999999999999883 22 233444544
Q ss_pred --EEeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhccccc
Q psy3476 115 --QIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNA 192 (1417)
Q Consensus 115 --~ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 192 (1417)
..+.+.. ...++|+|+|+|++.+.+..+
T Consensus 103 G~~~~~~~~-~~~~~Iiv~Tpe~l~~~l~~~------------------------------------------------- 132 (702)
T 2p6r_A 103 GDYESRDEH-LGDCDIIVTTSEKADSLIRNR------------------------------------------------- 132 (702)
T ss_dssp SSCBCCSSC-STTCSEEEEEHHHHHHHHHTT-------------------------------------------------
T ss_pred CCCCcchhh-ccCCCEEEECHHHHHHHHHcC-------------------------------------------------
Confidence 3333322 237899999999988765432
Q ss_pred hhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCccccc
Q psy3476 193 YEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIVAA 272 (1417)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~~~~ 272 (1417)
T Consensus 133 -------------------------------------------------------------------------------- 132 (702)
T 2p6r_A 133 -------------------------------------------------------------------------------- 132 (702)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCccccc--CcchHHHHHHHHhccCC
Q psy3476 273 DYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHL--HGDFLLGVIKCLLHSTA 350 (1417)
Q Consensus 273 ~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l--~~d~ll~llk~l~~~r~ 350 (1417)
..+++++++||+||+|+..- .+..+..++..+...++
T Consensus 133 -----------------------------------------~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~ 171 (702)
T 2p6r_A 133 -----------------------------------------ASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNK 171 (702)
T ss_dssp -----------------------------------------CSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCT
T ss_pred -----------------------------------------hhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCc
Confidence 02355789999999995221 22334444555555678
Q ss_pred CCcEEEEccCCC-HHHHHHHhccCceEEEeCCcccceeEEeccccccccccccC---CCCChHHHHHHHHHhhCCCCCCC
Q psy3476 351 EVKIILMSATIN-IELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEK---LDPGPYIRILSIIDKKYPRTERG 426 (1417)
Q Consensus 351 ~~qvIlmSATln-~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~---~~~~~~~~il~~l~~~~~~~~~g 426 (1417)
+.|+|+||||++ .+.+++|+ +++++..++|++|+...+............. .... ....+.+.+ ..++
T Consensus 172 ~~~ii~lSATl~n~~~~~~~l--~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~--~~~~ 243 (702)
T 2p6r_A 172 ALRVIGLSATAPNVTEIAEWL--DADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVK----FEELVEECV--AENG 243 (702)
T ss_dssp TCEEEEEECCCTTHHHHHHHT--TCEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEECC----HHHHHHHHH--HTTC
T ss_pred CceEEEECCCcCCHHHHHHHh--CCCcccCCCCCccceEEEeeCCeeeccCcchhhhhhhh----HHHHHHHHH--hcCC
Confidence 899999999994 99999999 4788999999999987654322211111000 0000 122222222 2468
Q ss_pred cEEEEeCCHHHHHHHHHHHHhhhhc-------------------------cCCcEEEEecCCCCHHHHHHHhccCCCCCc
Q psy3476 427 DVLIFMSGISEISSIVRAAQEYNEK-------------------------SQGWIVLPLHSTLSLEEQDRVFHYAPEGLR 481 (1417)
Q Consensus 427 ~iLVFl~~~~eie~la~~L~~~~~~-------------------------~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~r 481 (1417)
++||||+++++++.+++.|.+.... ..+..+.++||+|++++|..+++.|++|.+
T Consensus 244 ~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~ 323 (702)
T 2p6r_A 244 GVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNI 323 (702)
T ss_dssp CEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCC
Confidence 9999999999999999998764211 001357889999999999999999999999
Q ss_pred eEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHHHHHH
Q psy3476 482 KCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEEQYSL 558 (1417)
Q Consensus 482 kVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~~~~~ 558 (1417)
+|||||+++++|||+|++++||++ ...|| +. ..|+|.+++.||+|||||.| +|.||.++++.+++.
T Consensus 324 ~vlvaT~~l~~Gidip~~~~VI~~----~~~yd---~~----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~ 392 (702)
T 2p6r_A 324 KVVVATPTLAAGVNLPARRVIVRS----LYRFD---GY----SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREI 392 (702)
T ss_dssp CEEEECSTTTSSSCCCBSEEEECC----SEEES---SS----EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHH
T ss_pred eEEEECcHHhccCCCCceEEEEcC----ceeeC---CC----CCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHH
Confidence 999999999999999999999995 45677 11 56899999999999999999 899999999888665
Q ss_pred hhc---cCCCcccccChHH------HHHHHHhhCCC-CCc--------CCCCC--CCCCcchhHHHHHHHHhcCCCCCC-
Q psy3476 559 LAE---YSTPEIRRVSIDS------LLLSLVCMGLG-DVR--------KFPFL--EAPPAENIESSVRSLTQHGAIDSK- 617 (1417)
Q Consensus 559 l~~---~~~pEI~r~~L~~------~lL~lk~lgi~-~~~--------~f~~l--~pP~~~~l~~Al~~L~~lGaId~~- 617 (1417)
+.+ ...||+.+.++.. .++.++..|.. +.. +|.+. .+|..+.++.|++.|.+.|+|+.+
T Consensus 393 ~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~ 472 (702)
T 2p6r_A 393 AVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMVVEAA 472 (702)
T ss_dssp HHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSEEESS
T ss_pred HHHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHCcCeeECC
Confidence 432 4578888876554 67777777732 211 22221 367888999999999999999977
Q ss_pred -CCcChhhhhccCCCCChhhHHHHHhhhcc--CChhhHHHHhhhccCCCccccCCCCChhHHHHHhhcc--------cC-
Q psy3476 618 -ERVTSLGRFLSDLPVDIPLGKMLVFGSMF--HQIDTVLSLAAVLSVQSPFTNRAFRDPDCETARKELE--------SN- 685 (1417)
Q Consensus 618 -~~lT~LG~~ls~lpldp~lak~Ll~~~~f--~cle~vl~IaA~Lsv~~~F~~~~~~~~~~~~~r~~f~--------~~- 685 (1417)
..+|++|+.++.+|++|.++++++.+... .|...++.++++.+ .|.....+..+ +...+.+. .+
T Consensus 473 ~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~---e~~~i~~r~~e-~~~~~~~~~~~~~~~~~~~ 548 (702)
T 2p6r_A 473 HLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICRTP---DMERLTVRKTD-SWVEEEAFRLRKELSYYPS 548 (702)
T ss_dssp SEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHHST---TSCCCCCCTTT-HHHHHHHHHHGGGSSCCCC
T ss_pred eeccChHHHHHHHHhCCHHHHHHHHHHhhcccCCHHHHHHHhhCCc---ccccCCCCCch-HHHHHHHHhccccccCCcc
Confidence 68999999999999999999999999888 78888887776544 33332233333 22222111 11
Q ss_pred -CC-------ChHHHHHHHHHHHHhhhhhchHHHHHHHcCCCHHHHHHHHHHHH----HHHHHHHHCCCCcCCCCCCCCh
Q psy3476 686 -HG-------DPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRS----QFKQVLGDSGLITDIPGPDASL 753 (1417)
Q Consensus 686 -~s-------D~ltlln~f~~w~~~~~~~~~~~~WC~~~~L~~~~L~ei~~lr~----QL~~iL~~~gl~~~~~~~~~~~ 753 (1417)
.. .++-..-+.++|.+. ......|+++++..+.++.+.+--. .+.+++...|.. ..
T Consensus 549 ~~~~~~~~~~~~~k~~~lL~~~~~~----~~l~~i~~~~~~~~gdl~~i~~~a~~l~~a~~~i~~~~g~~--------~l 616 (702)
T 2p6r_A 549 DFSVEYDWFLSEVKTALCLKDWIEE----KDEDEICAKYGIAPGDLRRIVETAEWLSNAMNRIAEEVGNT--------SV 616 (702)
T ss_dssp TTSTTHHHHHHHHHHHHHHHHHHTT----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCC--------SS
T ss_pred hhhhhhhhhhhhHHHHHHHHHHHcC----CChHHHHHHhCCcHHhHHHHHHHHHHHHHHHHHHHHHcCHH--------HH
Confidence 11 233344456778642 2455789999998888877766544 444566666642 34
Q ss_pred hHHHHHHhcCchHHHHHHH
Q psy3476 754 SSRERALRHGEIKLLQAIK 772 (1417)
Q Consensus 754 ~s~~ral~~G~~~~L~~l~ 772 (1417)
....+++.+|-...+..|.
T Consensus 617 ~~l~~ri~~gv~~~~~~L~ 635 (702)
T 2p6r_A 617 SGLTERIKHGVKEELLELV 635 (702)
T ss_dssp TTHHHHHHHTCCGGGHHHH
T ss_pred HHHHHHHHcCCCcchHhhh
Confidence 5667788888877776665
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-46 Score=481.69 Aligned_cols=556 Identities=16% Similarity=0.088 Sum_probs=371.3
Q ss_pred HHHHHhcCCCcHHHHHHHHHH-HhcCCeEEEEcCCCcchhHHHHHHHHHcC---CCcEEEecchHHHHHHHHHHHHHHHc
Q psy3476 30 KIRETQNSLPVAQYKQEIIDT-VLKERVVIIAGDTGCGKSTQIPQYLVQAG---FQRIACTQPRRIACISLSKRVAYETL 105 (1417)
Q Consensus 30 ~~~~~r~~lp~~~~q~~il~~-i~~~~~~iI~a~TGsGKTt~ipq~ile~~---~~~i~~tqPrr~aa~~~a~rva~e~~ 105 (1417)
+..+.+.--..+.+|.++++. +.++++++|+||||||||+++++++++.. ..+++|++|+|.+|.++++++. .+
T Consensus 14 ~~l~~~g~~~l~~~Q~~~i~~~~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~-~l- 91 (720)
T 2zj8_A 14 STLKERGIESFYPPQAEALKSGILEGKNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQ-DW- 91 (720)
T ss_dssp HHHHHTTCCBCCHHHHHHHTTTGGGTCEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTG-GG-
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhcCCCcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHH-HH-
Confidence 344444444678999999998 88999999999999999999988887543 3689999999999999999984 22
Q ss_pred cccCCeEEEEEe---ecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhH
Q psy3476 106 SQYSNLVGYQIR---FEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPK 182 (1417)
Q Consensus 106 ~~~g~~vGy~ir---~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (1417)
..+|..||..+. .+.+....++|+|+|+|++.+.+..+
T Consensus 92 ~~~g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~--------------------------------------- 132 (720)
T 2zj8_A 92 EKIGLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHG--------------------------------------- 132 (720)
T ss_dssp GGGTCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHT---------------------------------------
T ss_pred HhcCCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcC---------------------------------------
Confidence 334666665443 22222346889999999887654321
Q ss_pred HhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCC
Q psy3476 183 RRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPP 262 (1417)
Q Consensus 183 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~ 262 (1417)
T Consensus 133 -------------------------------------------------------------------------------- 132 (720)
T 2zj8_A 133 -------------------------------------------------------------------------------- 132 (720)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHH
Q psy3476 263 LHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVI 342 (1417)
Q Consensus 263 ~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~ll 342 (1417)
..+++++++||+||+| +..+.+....+.
T Consensus 133 ---------------------------------------------------~~~l~~~~~vIiDE~H-~l~~~~r~~~~~ 160 (720)
T 2zj8_A 133 ---------------------------------------------------SSWIKDVKILVADEIH-LIGSRDRGATLE 160 (720)
T ss_dssp ---------------------------------------------------CTTGGGEEEEEEETGG-GGGCTTTHHHHH
T ss_pred ---------------------------------------------------hhhhhcCCEEEEECCc-ccCCCcccHHHH
Confidence 0235678999999999 322222332222
Q ss_pred HHHhccCCCCcEEEEccCC-CHHHHHHHhccCceEEEeCCcccceeEEecccccccccccc-CCCCChHHHHHHHHHhhC
Q psy3476 343 KCLLHSTAEVKIILMSATI-NIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSE-KLDPGPYIRILSIIDKKY 420 (1417)
Q Consensus 343 k~l~~~r~~~qvIlmSATl-n~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~-~~~~~~~~~il~~l~~~~ 420 (1417)
..+...+.+.|+|+||||+ |.+.+++|+ +++.+..++|++|+...+............ .........+.+.+
T Consensus 161 ~ll~~l~~~~~ii~lSATl~n~~~~~~~l--~~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 234 (720)
T 2zj8_A 161 VILAHMLGKAQIIGLSATIGNPEELAEWL--NAELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAI---- 234 (720)
T ss_dssp HHHHHHBTTBEEEEEECCCSCHHHHHHHT--TEEEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHH----
T ss_pred HHHHHhhcCCeEEEEcCCcCCHHHHHHHh--CCcccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHH----
Confidence 2222233489999999999 799999999 467788889999988654322211111100 00111122222222
Q ss_pred CCCCCCcEEEEeCCHHHHHHHHHHHHhhhhc----------------------------cCCcEEEEecCCCCHHHHHHH
Q psy3476 421 PRTERGDVLIFMSGISEISSIVRAAQEYNEK----------------------------SQGWIVLPLHSTLSLEEQDRV 472 (1417)
Q Consensus 421 ~~~~~g~iLVFl~~~~eie~la~~L~~~~~~----------------------------~~~~~V~~LHs~Ls~~eR~~v 472 (1417)
..++++||||+++++++.+++.|.+.... .....+.++||+|++++|..+
T Consensus 235 --~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v 312 (720)
T 2zj8_A 235 --RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLV 312 (720)
T ss_dssp --HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHH
T ss_pred --hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHH
Confidence 23689999999999999999999764211 001248999999999999999
Q ss_pred hccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEE
Q psy3476 473 FHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYR 549 (1417)
Q Consensus 473 ~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~ 549 (1417)
++.|++|.++|||||+++++|||+|++++||+++ ..|| ..+ ..|+|.+++.||+|||||.| +|.||.
T Consensus 313 ~~~f~~g~~~vlvaT~~l~~Gvdip~~~~VI~~~----~~yd-~~g-----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~ 382 (720)
T 2zj8_A 313 EENFRKGIIKAVVATPTLSAGINTPAFRVIIRDI----WRYS-DFG-----MERIPIIEVHQMLGRAGRPKYDEVGEGII 382 (720)
T ss_dssp HHHHHTTSSCEEEECSTTGGGCCCCBSEEEECCS----EECC-SSS-----CEECCHHHHHHHHTTBCCTTTCSEEEEEE
T ss_pred HHHHHCCCCeEEEECcHhhccCCCCceEEEEcCC----eeec-CCC-----CccCCHHHHHHHHhhcCCCCCCCCceEEE
Confidence 9999999999999999999999999999999955 3566 222 25899999999999999998 699999
Q ss_pred ecCHHHHHH----hhccCCCccccc-----ChHHHHHHHHhhCCC-C---Cc---CCCCC------CCCCcchhHHHHHH
Q psy3476 550 LYSEEQYSL----LAEYSTPEIRRV-----SIDSLLLSLVCMGLG-D---VR---KFPFL------EAPPAENIESSVRS 607 (1417)
Q Consensus 550 L~t~~~~~~----l~~~~~pEI~r~-----~L~~~lL~lk~lgi~-~---~~---~f~~l------~pP~~~~l~~Al~~ 607 (1417)
++++.+.+. +.....+++... .+...++.++..|.. + +. .+.|+ +++..+.+..+++.
T Consensus 383 l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~ 462 (720)
T 2zj8_A 383 VSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYF 462 (720)
T ss_dssp ECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSCCHHHHHHHHHHHHH
T ss_pred EecCccHHHHHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhccchHHHHHHHHHHHHH
Confidence 998766432 322233333322 366667777777632 1 11 12332 22223579999999
Q ss_pred HHhcCCCC-CCC---CcChhhhhccCCCCChhhHHHHHhhhcc----CChhhHHHHhhhccC-CCccccCCCCChhHHHH
Q psy3476 608 LTQHGAID-SKE---RVTSLGRFLSDLPVDIPLGKMLVFGSMF----HQIDTVLSLAAVLSV-QSPFTNRAFRDPDCETA 678 (1417)
Q Consensus 608 L~~lGaId-~~~---~lT~LG~~ls~lpldp~lak~Ll~~~~f----~cle~vl~IaA~Lsv-~~~F~~~~~~~~~~~~~ 678 (1417)
|.+.|+|+ .++ .+|++|+.++.+|++|.++++++.+... .|..+++.|+|+.+. .+.|.+ ..+.+..
T Consensus 463 L~~~~~i~~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~e~~~i~~r----~~e~~~l 538 (720)
T 2zj8_A 463 LLENEFIEISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGIFHLISLTPDITPFNYS----KREFERL 538 (720)
T ss_dssp HHHTTSEEECTTSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHHHHHHHTSTTCCCCCCC----HHHHHHH
T ss_pred HHHCCCeeECCCCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHHHHHHhccCccccccccC----HHHHHHH
Confidence 99999998 655 6999999999999999999999999887 899999999887763 344433 3332222
Q ss_pred Hhhcc-----------cCCC----------ChHHHHHHHHHHHHhhhhhchHHHHHHHcCCCHHHHHHHHHH----HHHH
Q psy3476 679 RKELE-----------SNHG----------DPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKL----RSQF 733 (1417)
Q Consensus 679 r~~f~-----------~~~s----------D~ltlln~f~~w~~~~~~~~~~~~WC~~~~L~~~~L~ei~~l----r~QL 733 (1417)
++.+. -..+ .++-..-+.++|.+. .....-++++++..+.++.+.+- -+.+
T Consensus 539 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~----~~l~~i~~~~~~~~gdl~~~~~~a~~l~~a~ 614 (720)
T 2zj8_A 539 EEEYYEFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINE----VPEGEIVEKYSVEPGDIYRIVETAEWLVYSL 614 (720)
T ss_dssp HHHHHHHGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTT----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccccccccccccccchhhhhHHHHHHHHHHHHHHHhC----CCHHHHHHHhCCChHhHHHHHHHHHHHHHHH
Confidence 22210 0111 122222345666532 23345578888888877766554 4455
Q ss_pred HHHHHHCCCCcCCCCCCCChhHHHHHHhcCchHHHHHHHhhhccccccccccccccc
Q psy3476 734 KQVLGDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADN 790 (1417)
Q Consensus 734 ~~iL~~~gl~~~~~~~~~~~~s~~ral~~G~~~~L~~l~~~~~~~~~r~rk~l~~~~ 790 (1417)
.+++...|.... ...+....+++.+|-...+..|. +.+ ..++.|.+.-.+.
T Consensus 615 ~~i~~~~g~~~~----~~~l~~l~~rl~~gv~~e~~~L~-qlp-~v~~~rar~L~~~ 665 (720)
T 2zj8_A 615 KEIAKVLGAYEI----VDYLETLRVRVKYGIREELIPLM-QLP-LVGRRRARALYNS 665 (720)
T ss_dssp HHHHHHHTCGGG----HHHHHHHHHHHHHTCCGGGGGGT-TST-TCCHHHHHHHHTT
T ss_pred HHHHHHcCcHHH----HHHHHHHHHHHHcCCCccchhhh-hCC-CCCHHHHHHHHHc
Confidence 556666665211 11244466677777665555554 222 2444444444433
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-42 Score=440.40 Aligned_cols=211 Identities=24% Similarity=0.392 Sum_probs=199.3
Q ss_pred hhhhhHHHhhhccccccCCCcccccccHHHH-hhhhcCCccchhhcchHHHHHHHHHhcCCCcccCCCCCCCCccchHHH
Q psy3476 794 IEEEEEEEEGERLESRTGPGVCYRLYSEEQY-SLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESS 872 (1417)
Q Consensus 794 ~~s~~~~~qR~~~agR~~pG~CyRLyt~~~~-~~l~~~~~PEI~r~~L~~~vL~lk~~g~~~~~~f~~l~~P~~~~l~~A 872 (1417)
-+|++.+.||+|||||.++|.||+||++++| +.|.+++.|||+|++|++++|++++||++++..|+|++||+.+++.+|
T Consensus 415 p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~~~~pEi~r~~L~~~~L~l~~~gi~~~~~f~~~~~p~~~~i~~a 494 (773)
T 2xau_A 415 PISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRA 494 (773)
T ss_dssp ECCHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCSSCCCGGGGSCCHHHHHHHHHTTCCCGGGCCCSSCCCHHHHHHH
T ss_pred cCCHHHHHhhccccCCCCCCEEEEEecHHHhcccccccCCCccccCcHHHHHHHHHHcCCCChhhccccCCCcHHHHHHH
Confidence 3689999999999999999999999999999 689999999999999999999999999999999999999999999999
Q ss_pred HHHHhhccccccccccchhhhhcccCCCCccccchhhhcccccchhhHHHHHHhhccccccchhhhcccccccCCCCccC
Q psy3476 873 VRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVTSLGRFLSDLPVDI 952 (1417)
Q Consensus 873 ~~~L~~lgald~~~~lT~lG~~l~~lPvdp~lak~Ll~~~~~~cl~~~l~i~a~ls~~~~~~~~~~~~~~~~~~~~~f~~ 952 (1417)
++.|..+||||++|+||++|+.|+.||+||++||||+.|+.++|++++++|||+|+.++++.++.+.+.+++.++..|.+
T Consensus 495 ~~~L~~lgald~~~~lT~lG~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~f~~ 574 (773)
T 2xau_A 495 LEELNYLACLDDEGNLTPLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFAH 574 (773)
T ss_dssp HHHHHHTTSBCTTSCBCHHHHHHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHHHHTSCCCBCCCTTCHHHHHHHHHTTCC
T ss_pred HHHHHHcCCcccCCCcChhhhhhccccCCHHHHHHHHhhcccCchhHHHHHHHhcccCCcccCChHHHHHHHHHHHhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999998888888889999999
Q ss_pred CCCCccccccccccc---h------hhHHHHhhhhccccchhhhhhh-ccccccCCCccccc
Q psy3476 953 PLGKMLVFGSMFHQI---D------TMLLLDLALNFGAIDSKERVTS-LGRFLSDLPVDIPL 1004 (1417)
Q Consensus 953 ~~gd~lt~l~~~~~~---~------~~~c~~~~l~~~~~~~~~~~~~-l~~~~~~~~~~~~~ 1004 (1417)
++|||+|++|+|++| . ..||.+||||+++|+++..++. |.+++++.++++.+
T Consensus 575 ~~~D~~~~l~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~ 636 (773)
T 2xau_A 575 PDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNT 636 (773)
T ss_dssp TTBHHHHHHHHHHHHTSHHHHHHCHHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred CCCcHHHHHHHHHHHHHhccccchHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCCCcCC
Confidence 999999999999988 2 6899999999999999999988 88777766665444
|
| >3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-37 Score=350.70 Aligned_cols=151 Identities=15% Similarity=0.205 Sum_probs=133.6
Q ss_pred cccCCC-CCCCCccchHHHHHHHhhccccccccccchhhhhcccCCCCccccchhhhcccccchhhHHHHHHhhcccccc
Q psy3476 855 VRKFPF-LEAPPAENIESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAID 933 (1417)
Q Consensus 855 ~~~f~~-l~~P~~~~l~~A~~~L~~lgald~~~~lT~lG~~l~~lPvdp~lak~Ll~~~~~~cl~~~l~i~a~ls~~~~~ 933 (1417)
...|+| +||||.+++.+|++.|+.+||||++|+||++|+.|+.||+||++||||+.|..++|++++++|||+||.++++
T Consensus 5 ~~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls~~~~f 84 (270)
T 3i4u_A 5 GPEFELGTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVF 84 (270)
T ss_dssp ---------CCHHHHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCCB
T ss_pred hhccccCCCCcCHHHHHHHHHHHHHcCCcCCCCCccHHHHHHHhCCCCHHHHHHHHHhhhcCCHHHHHHHHHHHCCCccc
Confidence 467899 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhcccccccCCCCccCCCCCccccccccccc-----hhhHHHHhhhhccccchhhhhhh-ccccccCCCcccccc
Q psy3476 934 SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQI-----DTMLLLDLALNFGAIDSKERVTS-LGRFLSDLPVDIPLG 1005 (1417)
Q Consensus 934 ~~~~~~~~~~~~~~~~f~~~~gd~lt~l~~~~~~-----~~~~c~~~~l~~~~~~~~~~~~~-l~~~~~~~~~~~~~~ 1005 (1417)
.++.+++..++.++..|.+++|||+|++|+|++| +..||.+||||+++|+++..++. |.+++++.++++.++
T Consensus 85 ~~p~~~~~~a~~~~~~f~~~~sD~ltlLn~~~~~~~~~~~~~wC~~~fL~~~~l~~~~~ir~QL~~~l~~~~~~~~s~ 162 (270)
T 3i4u_A 85 YRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSC 162 (270)
T ss_dssp CCCGGGHHHHHHHHHTTCBTTBHHHHHHHHHHHHHHTTTCHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCC
T ss_pred cCCchhHHHHHHHHHHccCCCChHHHHHHHHHHHHHcCchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCCcCCC
Confidence 9999888899999999999999999999999998 36899999999999999999999 887776665544333
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=346.36 Aligned_cols=335 Identities=17% Similarity=0.222 Sum_probs=228.4
Q ss_pred hHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC-----CCcEEEecchHHHHHHHHHHHHH
Q psy3476 28 LMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG-----FQRIACTQPRRIACISLSKRVAY 102 (1417)
Q Consensus 28 ~~~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~-----~~~i~~tqPrr~aa~~~a~rva~ 102 (1417)
+.+..+...-.+.+.+|.++++.+.++++++++||||||||++++.++++.. ..+++++.|+|.++.++++++..
T Consensus 51 ~~~~l~~~~~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~ 130 (414)
T 3eiq_A 51 LLRGIYAYGFEKPSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMA 130 (414)
T ss_dssp HHHHHHHTTCCSCCHHHHHHHHHHHTTCCEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCHHHHHHhHHHhCCCCEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHH
Confidence 3444444566778999999999999999999999999999999988888753 35799999999999999887765
Q ss_pred HHccccCCeEEEEEeeccc-------ccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhh
Q psy3476 103 ETLSQYSNLVGYQIRFEKH-------RREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRK 175 (1417)
Q Consensus 103 e~~~~~g~~vGy~ir~e~~-------~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (1417)
. +...+..++..+..... ....+.|+++|+|.|++.+..+
T Consensus 131 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~-------------------------------- 177 (414)
T 3eiq_A 131 L-GDYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRR-------------------------------- 177 (414)
T ss_dssp H-GGGSCCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHT--------------------------------
T ss_pred H-hcccCceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcC--------------------------------
Confidence 3 44445555554433221 1245688888888887755321
Q ss_pred hhhhhhHHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccce
Q psy3476 176 KAEEAPKRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFL 255 (1417)
Q Consensus 176 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l 255 (1417)
T Consensus 178 -------------------------------------------------------------------------------- 177 (414)
T 3eiq_A 178 -------------------------------------------------------------------------------- 177 (414)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeccCCCCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCc
Q psy3476 256 LGVISPPLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHG 335 (1417)
Q Consensus 256 ~~~~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~ 335 (1417)
...+.++++||+|||| +..+.
T Consensus 178 ----------------------------------------------------------~~~~~~~~~vViDEah-~~~~~ 198 (414)
T 3eiq_A 178 ----------------------------------------------------------YLSPKYIKMFVLDEAD-EMLSR 198 (414)
T ss_dssp ----------------------------------------------------------SSCSTTCCEEEECSHH-HHHHT
T ss_pred ----------------------------------------------------------CcccccCcEEEEECHH-Hhhcc
Confidence 0234568899999999 45566
Q ss_pred chHHHHHHHHhccCCCCcEEEEccCCCHHH--HHHHhccCceEEEeCCcccce---eEEeccccccccccccCCCCChHH
Q psy3476 336 DFLLGVIKCLLHSTAEVKIILMSATINIEL--FHTYFNRIAKIIKVPGRLYPI---QLEYHPIVELDRTKSEKLDPGPYI 410 (1417)
Q Consensus 336 d~ll~llk~l~~~r~~~qvIlmSATln~~~--~~~~f~~~~~vi~v~gr~~pv---~v~~~~~~~~~~~~~~~~~~~~~~ 410 (1417)
++...+...+...+++.++|+||||++.+. +...+..+...+.+.....+. ...+.... .......
T Consensus 199 ~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~ 269 (414)
T 3eiq_A 199 GFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVE---------REEWKLD 269 (414)
T ss_dssp TTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECS---------SSTTHHH
T ss_pred CcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeC---------hHHhHHH
Confidence 677777777777888999999999996443 223232344444333222111 11111100 0011122
Q ss_pred HHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchh
Q psy3476 411 RILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIA 490 (1417)
Q Consensus 411 ~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIa 490 (1417)
.+... +.....+++||||+++++++.+++.|.+ .++.+..+||++++++|..+++.|++|..+|||||+++
T Consensus 270 ~l~~~----~~~~~~~~~lvf~~~~~~~~~l~~~l~~-----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~ 340 (414)
T 3eiq_A 270 TLCDL----YETLTITQAVIFINTRRKVDWLTEKMHA-----RDFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLL 340 (414)
T ss_dssp HHHHH----HHSSCCSSCEEECSCHHHHHHHHHHHHT-----TTCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSC
T ss_pred HHHHH----HHhCCCCcEEEEeCCHHHHHHHHHHHHh-----cCCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCcc
Confidence 22222 2223467999999999999999999987 57889999999999999999999999999999999999
Q ss_pred hccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHH---hhccCCCc
Q psy3476 491 ETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSL---LAEYSTPE 566 (1417)
Q Consensus 491 e~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~---l~~~~~pE 566 (1417)
++|||+|++++||+ ||.+.+ ..+|.||+|||||.| +|.||.++++.+... +..+...+
T Consensus 341 ~~Gidip~v~~Vi~--------~~~p~s----------~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~~~~~~~~ 402 (414)
T 3eiq_A 341 ARGIDVQQVSLVIN--------YDLPTN----------RENYIHRIGRGGRFGRKGVAINMVTEEDKRTLRDIETFYNTS 402 (414)
T ss_dssp C--CCGGGCSCEEE--------SSCCSS----------THHHHHHSCCC-------CEEEEECSTHHHHHHHHHHHTTCC
T ss_pred ccCCCccCCCEEEE--------eCCCCC----------HHHhhhhcCcccCCCCCceEEEEEcHHHHHHHHHHHHHHcCC
Confidence 99999999999999 777654 455669999999998 799999999877654 33444444
Q ss_pred cccc
Q psy3476 567 IRRV 570 (1417)
Q Consensus 567 I~r~ 570 (1417)
+...
T Consensus 403 ~~~~ 406 (414)
T 3eiq_A 403 IEEM 406 (414)
T ss_dssp CEEC
T ss_pred cccc
Confidence 4443
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-34 Score=390.07 Aligned_cols=451 Identities=14% Similarity=0.112 Sum_probs=304.1
Q ss_pred cHHHHHHHHHHHh-cCCeEEEEcCCCcchhHHHHHHHHH----cCCCcEEEecchHHHHHHHHHHHHHHHccccCCeEEE
Q psy3476 40 VAQYKQEIIDTVL-KERVVIIAGDTGCGKSTQIPQYLVQ----AGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGY 114 (1417)
Q Consensus 40 ~~~~q~~il~~i~-~~~~~iI~a~TGsGKTt~ipq~ile----~~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy 114 (1417)
..+.|.+++..+. .+++++|+||||||||+++..+|++ ....+++++.|+|..|.+.++.+.+.++..+|..||.
T Consensus 927 fnpiQ~q~~~~l~~~~~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~V~~ 1006 (1724)
T 4f92_B 927 FNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKKVVL 1006 (1724)
T ss_dssp CCHHHHHHHHHHHSCCSCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCCEEE
T ss_pred CCHHHHHHHHHHhcCCCcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCEEEE
Confidence 3567889999884 6789999999999999976666554 3456899999999999999999988888777777775
Q ss_pred EEeecc---cccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhcccc
Q psy3476 115 QIRFEK---HRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADN 191 (1417)
Q Consensus 115 ~ir~e~---~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 191 (1417)
..+..+ +...+..|++||++.+
T Consensus 1007 ltGd~~~~~~~~~~~~IiV~TPEkl------------------------------------------------------- 1031 (1724)
T 4f92_B 1007 LTGETSTDLKLLGKGNIIISTPEKW------------------------------------------------------- 1031 (1724)
T ss_dssp CCSCHHHHHHHHHHCSEEEECHHHH-------------------------------------------------------
T ss_pred EECCCCcchhhcCCCCEEEECHHHH-------------------------------------------------------
Confidence 332110 1112345556665543
Q ss_pred chhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCcccc
Q psy3476 192 AYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIVA 271 (1417)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~~~ 271 (1417)
T Consensus 1032 -------------------------------------------------------------------------------- 1031 (1724)
T 4f92_B 1032 -------------------------------------------------------------------------------- 1031 (1724)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccc-cCcchHHHHHHHHh----
Q psy3476 272 ADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERH-LHGDFLLGVIKCLL---- 346 (1417)
Q Consensus 272 ~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~-l~~d~ll~llk~l~---- 346 (1417)
......+.....++++++||+||+|... ..+..+..++.++.
T Consensus 1032 ---------------------------------d~llr~~~~~~~l~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~~ 1078 (1724)
T 4f92_B 1032 ---------------------------------DILSRRWKQRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISS 1078 (1724)
T ss_dssp ---------------------------------HHHHTTTTTCHHHHSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHHH
T ss_pred ---------------------------------HHHHhCcccccccceeeEEEeechhhcCCCCCccHHHHHHHHHHHHh
Confidence 3322222223456789999999999221 12233344443332
Q ss_pred ccCCCCcEEEEccCC-CHHHHHHHhccC-ce--EEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCC
Q psy3476 347 HSTAEVKIILMSATI-NIELFHTYFNRI-AK--IIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPR 422 (1417)
Q Consensus 347 ~~r~~~qvIlmSATl-n~~~~~~~f~~~-~~--vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~ 422 (1417)
...+++|+|+||||+ |++++++|++.. .. .+....|+.|++.+............ . ..........+.+.
T Consensus 1079 ~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~--~-~~~~~~~~~~i~~~--- 1152 (1724)
T 4f92_B 1079 QIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTR--L-LSMAKPVYHAITKH--- 1152 (1724)
T ss_dssp TTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCCSHHHH--H-HTTHHHHHHHHHHH---
T ss_pred hcCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCCCchhh--h-hhhcchHHHHHHHh---
Confidence 345789999999999 899999999632 22 34445677777765433222111000 0 00112223333333
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhhc-----------------------------cCCcEEEEecCCCCHHHHHHHh
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNEK-----------------------------SQGWIVLPLHSTLSLEEQDRVF 473 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~~-----------------------------~~~~~V~~LHs~Ls~~eR~~v~ 473 (1417)
..++++||||++++.++.++..|...... .....|..+||||++++|..|+
T Consensus 1153 ~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE 1232 (1724)
T 4f92_B 1153 SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVE 1232 (1724)
T ss_dssp CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHH
T ss_pred cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHH
Confidence 44689999999999999999887543211 0123588999999999999999
Q ss_pred ccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEe
Q psy3476 474 HYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRL 550 (1417)
Q Consensus 474 ~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L 550 (1417)
+.|++|.++|||||+++++|||+|++++||.+ ...||.... ...+.|..++.||+|||||.| .|.|+.+
T Consensus 1233 ~lF~~G~i~VLvaT~tlA~GVnlPa~~VVI~~----~~~~dg~~~----~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll 1304 (1724)
T 4f92_B 1233 QLFSSGAIQVVVASRSLCWGMNVAAHLVIIMD----TQYYNGKIH----AYVDYPIYDVLQMVGHANRPLQDDEGRCVIM 1304 (1724)
T ss_dssp HHHHHTSBCEEEEEGGGSSSCCCCBSEEEEEC----SEEEETTTT----EEEECCHHHHHHHHTTBCCTTTCSCEEEEEE
T ss_pred HHHHCCCCeEEEEChHHHcCCCCCccEEEEec----CccccCccc----ccCCCCHHHHHHhhccccCCCCCCceEEEEE
Confidence 99999999999999999999999999999973 334665432 234789999999999999998 6999999
Q ss_pred cCHHHHHHhhcc-CCCcccc----cChHHHHHHHHhhCCC-CCc--------CC-----------CCCCCCC--------
Q psy3476 551 YSEEQYSLLAEY-STPEIRR----VSIDSLLLSLVCMGLG-DVR--------KF-----------PFLEAPP-------- 597 (1417)
Q Consensus 551 ~t~~~~~~l~~~-~~pEI~r----~~L~~~lL~lk~lgi~-~~~--------~f-----------~~l~pP~-------- 597 (1417)
+.+.+...+..+ ..|+... ..+...++..+..|.- +.. +| .-+...+
T Consensus 1305 ~~~~~~~~~~~ll~~~~pveS~L~~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l~~~~~~~~~~~l 1384 (1724)
T 4f92_B 1305 CQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHL 1384 (1724)
T ss_dssp EEGGGHHHHHHHTTSCBCCCCCGGGSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGGTTCSCCSHHHHHHHH
T ss_pred ecchHHHHHHHHhCCCCceeeecccchHHHHHHHHHhcccCCHHHHHHHHHhhHHHHHHhcCcccccccccchhhHHHHH
Confidence 877655543332 2333333 3455666666665532 111 11 0111111
Q ss_pred cchhHHHHHHHHhcCCCCC--CC--CcChhhhhccCCCCChhhHHHHHhhhccCChhhHHHHhhhccCCCccccCCCCCh
Q psy3476 598 AENIESSVRSLTQHGAIDS--KE--RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDP 673 (1417)
Q Consensus 598 ~~~l~~Al~~L~~lGaId~--~~--~lT~LG~~ls~lpldp~lak~Ll~~~~f~cle~vl~IaA~Lsv~~~F~~~~~~~~ 673 (1417)
.+.++.+++.|.+.|+|.. ++ .+|++|++++.++++|..++++..+....+. ...+..+++...+|.....+..
T Consensus 1385 ~~lv~~~l~~L~~~~~I~~~~~~~l~~T~lG~i~s~~yi~~~t~~~~~~~l~~~~~--~~~~L~il~~a~ef~~i~~R~~ 1462 (1724)
T 4f92_B 1385 SELVEQTLSDLEQSKCISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTK--VRGLIEIISNAAEYENIPIRHH 1462 (1724)
T ss_dssp HHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCC--HHHHHHHHHTSGGGTTCCCCTT
T ss_pred HHHHHHHHHHHHHCCCEEEcCCCCEeecHHHHHHHHHCCCHHHHHHHHHhccccCC--HHHHHHHhcCCccccccccccc
Confidence 2357789999999999953 33 4799999999999999999999887665543 2234455666778877655554
Q ss_pred h
Q psy3476 674 D 674 (1417)
Q Consensus 674 ~ 674 (1417)
+
T Consensus 1463 E 1463 (1724)
T 4f92_B 1463 E 1463 (1724)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=382.29 Aligned_cols=331 Identities=16% Similarity=0.156 Sum_probs=247.9
Q ss_pred cCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc--CCCcEEEecchHHHHHHHHHHHHHHHccccCCeEE
Q psy3476 36 NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA--GFQRIACTQPRRIACISLSKRVAYETLSQYSNLVG 113 (1417)
Q Consensus 36 ~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~--~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vG 113 (1417)
...+.+.+|.++++.+.++++++|+||||||||+++..++++. ...+++++.|+|.++.|.++++.+.++ .||
T Consensus 181 ~~f~ltp~Q~~AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~-----~Vg 255 (1108)
T 3l9o_A 181 YPFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG-----DVG 255 (1108)
T ss_dssp CSSCCCHHHHHHHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTS-----SEE
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhC-----Ccc
Confidence 3456789999999999999999999999999999988887765 246899999999999999999888764 577
Q ss_pred EEEeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhccccch
Q psy3476 114 YQIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAY 193 (1417)
Q Consensus 114 y~ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 193 (1417)
+ +.++...+..+.|+|+|+|+|++++..+
T Consensus 256 l-ltGd~~~~~~~~IlV~Tpe~L~~~L~~~-------------------------------------------------- 284 (1108)
T 3l9o_A 256 L-MTGDITINPDAGCLVMTTEILRSMLYRG-------------------------------------------------- 284 (1108)
T ss_dssp E-ECSSCBCCCSCSEEEEEHHHHHHHHHHC--------------------------------------------------
T ss_pred E-EeCccccCCCCCEEEeChHHHHHHHHcC--------------------------------------------------
Confidence 7 4455556678999999999999876432
Q ss_pred hhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCcccccc
Q psy3476 194 EIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIVAAD 273 (1417)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~~~~~ 273 (1417)
T Consensus 285 -------------------------------------------------------------------------------- 284 (1108)
T 3l9o_A 285 -------------------------------------------------------------------------------- 284 (1108)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCc
Q psy3476 274 YFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVK 353 (1417)
Q Consensus 274 ~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~q 353 (1417)
...+.++++||||||| +..+.++...+...+...+++.|
T Consensus 285 ----------------------------------------~~~l~~l~lVVIDEaH-~l~d~~rg~~~e~ii~~l~~~~q 323 (1108)
T 3l9o_A 285 ----------------------------------------SEVMREVAWVIFDEVH-YMRDKERGVVWEETIILLPDKVR 323 (1108)
T ss_dssp ----------------------------------------SSHHHHEEEEEEETGG-GTTSHHHHHHHHHHHHHSCTTSE
T ss_pred ----------------------------------------ccccccCCEEEEhhhh-hccccchHHHHHHHHHhcCCCce
Confidence 0124467899999999 77777777777777777888999
Q ss_pred EEEEccCC-CHHHHHHHhc----cCceEEEeCCcccceeEEecccccccccc----c------------cCCCC------
Q psy3476 354 IILMSATI-NIELFHTYFN----RIAKIIKVPGRLYPIQLEYHPIVELDRTK----S------------EKLDP------ 406 (1417)
Q Consensus 354 vIlmSATl-n~~~~~~~f~----~~~~vi~v~gr~~pv~v~~~~~~~~~~~~----~------------~~~~~------ 406 (1417)
+|+||||+ +...+.+|+. ..+.++....++.|+..++.+........ . ..+..
T Consensus 324 vl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~ 403 (1108)
T 3l9o_A 324 YVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDP 403 (1108)
T ss_dssp EEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC--------
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhcccc
Confidence 99999999 6667787774 25778888889999876654322110000 0 00000
Q ss_pred --------------------ChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhcc--------------
Q psy3476 407 --------------------GPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKS-------------- 452 (1417)
Q Consensus 407 --------------------~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~-------------- 452 (1417)
.....+...+. .+.....+++||||+++++++.++..|.......
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~-~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~ 482 (1108)
T 3l9o_A 404 NSTDSRGKKGQTYKGGSAKGDAKGDIYKIVK-MIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNA 482 (1108)
T ss_dssp ---------------------CHHHHHHHHH-HHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGS
T ss_pred cccccccccccccccccccccchhHHHHHHH-HHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 00111222222 2222346799999999999999999875421110
Q ss_pred --------------------CCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCccccee
Q psy3476 453 --------------------QGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMS 512 (1417)
Q Consensus 453 --------------------~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~ 512 (1417)
....+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+
T Consensus 483 ~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~-------- 554 (1108)
T 3l9o_A 483 IALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFT-------- 554 (1108)
T ss_dssp CTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEES--------
T ss_pred HhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEe--------
Confidence 0012899999999999999999999999999999999999999999999998
Q ss_pred cccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHH
Q psy3476 513 YDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEE 554 (1417)
Q Consensus 513 yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~ 554 (1417)
|+.+.+... ..|+|.++|.||+|||||.| +|.||.++++.
T Consensus 555 ~~~~~d~~~--~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~~~~ 597 (1108)
T 3l9o_A 555 SVRKWDGQQ--FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 597 (1108)
T ss_dssp CSEEESSSC--EEECCHHHHHHHHHHSCCSSSCSSEEEEEEECCC
T ss_pred cCcccCccc--cccCCHHHHHHhhcccCCCCCCCceEEEEEecCC
Confidence 444443333 34899999999999999999 79999998754
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-34 Score=391.67 Aligned_cols=366 Identities=18% Similarity=0.203 Sum_probs=242.5
Q ss_pred ccchhhhhhccccccccccccCCCCccEEEEecCcccccC---cchHHHHHHHH----hccCCCCcEEEEccCC-CHHHH
Q psy3476 295 DFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLH---GDFLLGVIKCL----LHSTAEVKIILMSATI-NIELF 366 (1417)
Q Consensus 295 d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~---~d~ll~llk~l----~~~r~~~qvIlmSATl-n~~~~ 366 (1417)
|++++||++|..+.........++++++||+||+| .++ +..+..++.++ ....+++|+|+||||+ |.+++
T Consensus 183 ~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH--~l~d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~~dv 260 (1724)
T 4f92_B 183 QIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIH--LLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDV 260 (1724)
T ss_dssp SEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGG--GGGSTTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTHHHH
T ss_pred CEEEECHHHHHHHHcCCccchhhcCcCEEEEecch--hcCCccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCHHHH
Confidence 34444555444333332223457789999999999 232 22344444333 2346789999999999 89999
Q ss_pred HHHhccC----ceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHH-hhCCCCCCCcEEEEeCCHHHHHHH
Q psy3476 367 HTYFNRI----AKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIID-KKYPRTERGDVLIFMSGISEISSI 441 (1417)
Q Consensus 367 ~~~f~~~----~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~-~~~~~~~~g~iLVFl~~~~eie~l 441 (1417)
++|++.. ..++....|+.|++.++.......... .....-..+. .......++++||||+++++++.+
T Consensus 261 A~wL~~~~~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~-------~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~ 333 (1724)
T 4f92_B 261 ATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIK-------RFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKT 333 (1724)
T ss_dssp HHHTTCCHHHHEEECCGGGCSSCEEEECCEECCCCHHH-------HHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHH
T ss_pred HHHhCCCCCCCeEEECCCCccCccEEEEeccCCcchhh-------hhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHH
Confidence 9999542 123444556777766554322211100 0111111111 122224467999999999999999
Q ss_pred HHHHHhhhhc--------------------------------cCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecch
Q psy3476 442 VRAAQEYNEK--------------------------------SQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489 (1417)
Q Consensus 442 a~~L~~~~~~--------------------------------~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnI 489 (1417)
++.|.+.... .-...|..+||||++++|..+++.|++|.++|||||++
T Consensus 334 A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G~i~vlvaTsT 413 (1724)
T 4f92_B 334 ARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTAT 413 (1724)
T ss_dssp HHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTTCCCEEEECHH
T ss_pred HHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCCCCeEEEEcch
Confidence 9988653211 01234889999999999999999999999999999999
Q ss_pred hhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHHHHH---HhhccC
Q psy3476 490 AETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEEQYS---LLAEYS 563 (1417)
Q Consensus 490 ae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~~~~---~l~~~~ 563 (1417)
+++|||+|++++||. ....||+..+ ...++|.+++.||+|||||.| .|.++.+.++++.. .+..-.
T Consensus 414 La~GVNlPa~~vVI~----~~~~~~~~~~----~~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~ll~~~ 485 (1724)
T 4f92_B 414 LAWGVNLPAHTVIIK----GTQVYSPEKG----RWTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQ 485 (1724)
T ss_dssp HHHHSCCCBSEEEEE----CCEEEETTTT----EEEECCHHHHHHHHTTBSCTTTCSCEEEEEEEESTTCCHHHHHTTTC
T ss_pred hHhhCCCCCceEEEe----CCEEecCcCC----CcccCCHHHHHHhhhhccCCCCCCccEEEEEecchhHHHHHHHHcCC
Confidence 999999999999996 2456777654 235789999999999999998 69999888765432 222111
Q ss_pred CC-c-ccccChHHHHHHHHhhCC-CCCc--------CC--------C--------------CCCCCCcchhHHHHHHHHh
Q psy3476 564 TP-E-IRRVSIDSLLLSLVCMGL-GDVR--------KF--------P--------------FLEAPPAENIESSVRSLTQ 610 (1417)
Q Consensus 564 ~p-E-I~r~~L~~~lL~lk~lgi-~~~~--------~f--------~--------------~l~pP~~~~l~~Al~~L~~ 610 (1417)
.| | -....+.+.+++.+.+|. .+.. +| | .++....+.+..++..|.+
T Consensus 486 ~pieS~l~~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~~~~~~~~d~~l~~~~~~~i~~~~~~L~~ 565 (1724)
T 4f92_B 486 LPIESQMVSKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTAALMLDK 565 (1724)
T ss_dssp SCCCCCTTTTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTCCHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred CcchhhccccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhccCccccccchHHHHHHHHHHHHHHHHHHH
Confidence 11 1 112245566666555552 2211 00 0 0111112347789999999
Q ss_pred cCCCCCC---C--CcChhhhhccCCCCChhhHHHHHhhhccCChhhHHHHhhhccCCCccccCCCCChhHHHHH
Q psy3476 611 HGAIDSK---E--RVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPFTNRAFRDPDCETAR 679 (1417)
Q Consensus 611 lGaId~~---~--~lT~LG~~ls~lpldp~lak~Ll~~~~f~cle~vl~IaA~Lsv~~~F~~~~~~~~~~~~~r 679 (1417)
.|+|..+ + .+|++|+++|+++++|..++.+.....-.+.+ ..+..++|..++|.....++++..+..
T Consensus 566 ~~li~~d~~~~~~~~T~lGr~~s~~yi~~~t~~~~~~~l~~~~~~--~~ll~~is~s~ef~~i~~R~~E~~~l~ 637 (1724)
T 4f92_B 566 NNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSE--IELFRVFSLSSEFKNITVREEEKLELQ 637 (1724)
T ss_dssp TTSEEECTTTCBEEECHHHHHHHHTTCCHHHHHHHHHHCCTTCCH--HHHHHHHHTCGGGTTCCCCGGGHHHHH
T ss_pred CCCeeeecCCCccccchHHHHHHHhcCCHHHHHHHHhhcCCCCCH--HHHHHHHhCChhhccCCcCHHHHHHHH
Confidence 9999533 2 48999999999999999999998776554443 345677788889988777776655443
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-33 Score=327.32 Aligned_cols=319 Identities=18% Similarity=0.223 Sum_probs=233.1
Q ss_pred cCCCcHHHHHHHHHHHhcC--CeEEEEcCCCcchhHHHHHHHHHcC-----CCcEEEecchHHHHHHHHHHHHHHHcccc
Q psy3476 36 NSLPVAQYKQEIIDTVLKE--RVVIIAGDTGCGKSTQIPQYLVQAG-----FQRIACTQPRRIACISLSKRVAYETLSQY 108 (1417)
Q Consensus 36 ~~lp~~~~q~~il~~i~~~--~~~iI~a~TGsGKTt~ipq~ile~~-----~~~i~~tqPrr~aa~~~a~rva~e~~~~~ 108 (1417)
.--..+.+|.++++.+.++ +++++++|||||||+++..++++.. ..+++++.|+|.++.|+++++.+. +...
T Consensus 24 ~~~~~~~~Q~~~i~~~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~-~~~~ 102 (395)
T 3pey_A 24 KFQKPSKIQERALPLLLHNPPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEM-GKFT 102 (395)
T ss_dssp TCCSCCHHHHHHHHHHHCSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHH-TTTS
T ss_pred CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHH-hccc
Confidence 3345678999999999887 8999999999999999888887752 357999999999999998876543 3333
Q ss_pred CCeEEEEEee--cccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhh
Q psy3476 109 SNLVGYQIRF--EKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKM 186 (1417)
Q Consensus 109 g~~vGy~ir~--e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (1417)
+..++..... +........|+++|++.+++.+...
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~------------------------------------------- 139 (395)
T 3pey_A 103 KITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRK------------------------------------------- 139 (395)
T ss_dssp CCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTT-------------------------------------------
T ss_pred CeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcC-------------------------------------------
Confidence 4444433321 2222345789999998887654322
Q ss_pred hccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCC
Q psy3476 187 LKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCG 266 (1417)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~ 266 (1417)
T Consensus 140 -------------------------------------------------------------------------------- 139 (395)
T 3pey_A 140 -------------------------------------------------------------------------------- 139 (395)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHh
Q psy3476 267 GEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLL 346 (1417)
Q Consensus 267 ~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~ 346 (1417)
...+.++++||+||||....+.++...+.....
T Consensus 140 -----------------------------------------------~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~ 172 (395)
T 3pey_A 140 -----------------------------------------------LMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKR 172 (395)
T ss_dssp -----------------------------------------------CBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHH
T ss_pred -----------------------------------------------CcccccCCEEEEEChhhhcCccccHHHHHHHHH
Confidence 023567899999999944433566666666666
Q ss_pred ccCCCCcEEEEccCCCH--HHHHHHhccCceEEEeCCcccce---eEEeccccccccccccCCCCChHHHHHHHHHhhCC
Q psy3476 347 HSTAEVKIILMSATINI--ELFHTYFNRIAKIIKVPGRLYPI---QLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYP 421 (1417)
Q Consensus 347 ~~r~~~qvIlmSATln~--~~~~~~f~~~~~vi~v~gr~~pv---~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~ 421 (1417)
..+++.++++||||++. ..+...+..+...+.+.....+. ...+... .........+...+.
T Consensus 173 ~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~l~~~~~ 239 (395)
T 3pey_A 173 FLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDC-------------KNEADKFDVLTELYG 239 (395)
T ss_dssp TSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEEC-------------SSHHHHHHHHHHHHT
T ss_pred hCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEc-------------CchHHHHHHHHHHHH
Confidence 67788999999999964 34444443444444443332211 1111110 011222333444444
Q ss_pred CCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEE
Q psy3476 422 RTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRF 501 (1417)
Q Consensus 422 ~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~ 501 (1417)
....+++||||+++++++.+++.|++ .++.+..+||+++.++|..+++.|++|+.+|||||+++++|||+|++++
T Consensus 240 ~~~~~~~lvf~~~~~~~~~l~~~l~~-----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~ 314 (395)
T 3pey_A 240 LMTIGSSIIFVATKKTANVLYGKLKS-----EGHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSM 314 (395)
T ss_dssp TTTSSEEEEECSCHHHHHHHHHHHHH-----TTCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEE
T ss_pred hccCCCEEEEeCCHHHHHHHHHHHHh-----cCCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCE
Confidence 44578999999999999999999987 5678999999999999999999999999999999999999999999999
Q ss_pred EEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHH
Q psy3476 502 VVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQ 555 (1417)
Q Consensus 502 VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~ 555 (1417)
||+ ||.|.. ...+.|..++.||+|||||.| +|.|+.+++..+
T Consensus 315 Vi~--------~~~p~~----~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 357 (395)
T 3pey_A 315 VVN--------YDLPTL----ANGQADPATYIHRIGRTGRFGRKGVAISFVHDKN 357 (395)
T ss_dssp EEE--------SSCCBC----TTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred EEE--------cCCCCC----CcCCCCHHHhhHhccccccCCCCceEEEEEechH
Confidence 999 777652 233568899999999999998 699999997543
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=328.72 Aligned_cols=321 Identities=18% Similarity=0.197 Sum_probs=231.6
Q ss_pred cCCCcHHHHHHHHHHHhcC--CeEEEEcCCCcchhHHHHHHHHHcCC-----CcEEEecchHHHHHHHHHHHHHHHcccc
Q psy3476 36 NSLPVAQYKQEIIDTVLKE--RVVIIAGDTGCGKSTQIPQYLVQAGF-----QRIACTQPRRIACISLSKRVAYETLSQY 108 (1417)
Q Consensus 36 ~~lp~~~~q~~il~~i~~~--~~~iI~a~TGsGKTt~ipq~ile~~~-----~~i~~tqPrr~aa~~~a~rva~e~~~~~ 108 (1417)
.--..+.+|.++++.+.++ ++++++||||||||.++..++++... .+++++.|+|.++.++++++.+......
T Consensus 44 g~~~~~~~Q~~~i~~~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~ 123 (412)
T 3fht_A 44 GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 123 (412)
T ss_dssp TCCSCCHHHHHHHHHHHSSSCCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCCCHHHHHHHHHHhcCCCCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcc
Confidence 3345678999999999887 89999999999999998887776432 3799999999999999887766543333
Q ss_pred CCeEEEEEeeccc---ccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhh
Q psy3476 109 SNLVGYQIRFEKH---RREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRK 185 (1417)
Q Consensus 109 g~~vGy~ir~e~~---~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1417)
+..+++.+..... ......|+++|++.+++.+...
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~------------------------------------------ 161 (412)
T 3fht_A 124 ELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL------------------------------------------ 161 (412)
T ss_dssp TCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTS------------------------------------------
T ss_pred cceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhc------------------------------------------
Confidence 5667766554332 2335689999999988766432
Q ss_pred hhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcC
Q psy3476 186 MLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHC 265 (1417)
Q Consensus 186 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~ 265 (1417)
T Consensus 162 -------------------------------------------------------------------------------- 161 (412)
T 3fht_A 162 -------------------------------------------------------------------------------- 161 (412)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHH
Q psy3476 266 GGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCL 345 (1417)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l 345 (1417)
....+.++++||+||+|.......+...+....
T Consensus 162 -----------------------------------------------~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~ 194 (412)
T 3fht_A 162 -----------------------------------------------KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQ 194 (412)
T ss_dssp -----------------------------------------------CSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHH
T ss_pred -----------------------------------------------CCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHH
Confidence 001235688999999993332345666666666
Q ss_pred hccCCCCcEEEEccCCCHH--HHHHHhccCceEEEeCCccc---ceeEEeccccccccccccCCCCChHHHHHHHHHhhC
Q psy3476 346 LHSTAEVKIILMSATINIE--LFHTYFNRIAKIIKVPGRLY---PIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKY 420 (1417)
Q Consensus 346 ~~~r~~~qvIlmSATln~~--~~~~~f~~~~~vi~v~gr~~---pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~ 420 (1417)
...+++.++++||||++.. .+...+..+...+.+..... .+...+.... ........+.+.+
T Consensus 195 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~l~~~~ 261 (412)
T 3fht_A 195 RMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCS-------------SRDEKFQALCNLY 261 (412)
T ss_dssp HTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECS-------------SHHHHHHHHHHHH
T ss_pred hhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcC-------------ChHHHHHHHHHHH
Confidence 6667889999999999653 33333324444444432211 1111111110 0111222222222
Q ss_pred CCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeE
Q psy3476 421 PRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIR 500 (1417)
Q Consensus 421 ~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~ 500 (1417)
.....+++||||+++++++.+++.|.+ .++.+..+||+++.++|..+++.|++|+.+|||||+++++|||+|+++
T Consensus 262 ~~~~~~~~lvf~~~~~~~~~l~~~L~~-----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~ 336 (412)
T 3fht_A 262 GAITIAQAMIFCHTRKTASWLAAELSK-----EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVS 336 (412)
T ss_dssp HHHSSSEEEEECSSHHHHHHHHHHHHH-----TTCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEE
T ss_pred hhcCCCCEEEEeCCHHHHHHHHHHHHh-----CCCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCC
Confidence 223467999999999999999999987 467899999999999999999999999999999999999999999999
Q ss_pred EEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHH
Q psy3476 501 FVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQ 555 (1417)
Q Consensus 501 ~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~ 555 (1417)
+||+ ||.|..... +.|..+|.||+|||||.| +|.|+.+++..+
T Consensus 337 ~Vi~--------~~~p~~~~~----~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~ 380 (412)
T 3fht_A 337 VVIN--------FDLPVDKDG----NPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 380 (412)
T ss_dssp EEEE--------SSCCBCSSS----SBCHHHHHHHHTTSSCTTCCEEEEEEECSHH
T ss_pred EEEE--------ECCCCCCCC----CcchheeecccCcccCCCCCceEEEEEcChh
Confidence 9999 777654322 357788899999999998 699999998554
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=359.84 Aligned_cols=302 Identities=20% Similarity=0.214 Sum_probs=221.9
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCCCcEEEecchHHHHHHHHHHHHHHHccccC
Q psy3476 30 KIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYS 109 (1417)
Q Consensus 30 ~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g 109 (1417)
+..+.|..+|++.+|++|+..+.++++++++||||||||+++++++++.+ .+++|++|+|++|.+++++++++++...|
T Consensus 208 e~l~~r~~lP~~~~q~~i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~g-~~vLVl~PTReLA~Qia~~l~~~~g~~vg 286 (666)
T 3o8b_A 208 ESMETTMRSPVFTDNSSPPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQG-YKVLVLNPSVAATLGFGAYMSKAHGIDPN 286 (666)
T ss_dssp HHHHHHHHSCSCCCCCSCCCCCSSCEEEEEECCTTSCTTTHHHHHHHHTT-CCEEEEESCHHHHHHHHHHHHHHHSCCCE
T ss_pred HhhhhhccCCcHHHHHHHHHHHHcCCeEEEEeCCchhHHHHHHHHHHHCC-CeEEEEcchHHHHHHHHHHHHHHhCCCee
Confidence 44566888999999999999999999999999999999999999999865 38999999999999999999998877665
Q ss_pred CeEEEEEeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhcc
Q psy3476 110 NLVGYQIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKA 189 (1417)
Q Consensus 110 ~~vGy~ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 189 (1417)
..+|+.. ....++|+|+|+|+|++. .
T Consensus 287 ~~vG~~~-----~~~~~~IlV~TPGrLl~~---~---------------------------------------------- 312 (666)
T 3o8b_A 287 IRTGVRT-----ITTGAPVTYSTYGKFLAD---G---------------------------------------------- 312 (666)
T ss_dssp EECSSCE-----ECCCCSEEEEEHHHHHHT---T----------------------------------------------
T ss_pred EEECcEe-----ccCCCCEEEECcHHHHhC---C----------------------------------------------
Confidence 5555432 356789999999987531 0
Q ss_pred ccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCcc
Q psy3476 190 DNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEI 269 (1417)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~ 269 (1417)
T Consensus 313 -------------------------------------------------------------------------------- 312 (666)
T 3o8b_A 313 -------------------------------------------------------------------------------- 312 (666)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhccC
Q psy3476 270 VAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHST 349 (1417)
Q Consensus 270 ~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r 349 (1417)
...++++++|||||||++ +.++...+...+...+
T Consensus 313 --------------------------------------------~l~l~~l~~lVlDEAH~l--~~~~~~~l~~Il~~l~ 346 (666)
T 3o8b_A 313 --------------------------------------------GCSGGAYDIIICDECHST--DSTTILGIGTVLDQAE 346 (666)
T ss_dssp --------------------------------------------SCCTTSCSEEEETTTTCC--SHHHHHHHHHHHHHTT
T ss_pred --------------------------------------------CcccCcccEEEEccchhc--CccHHHHHHHHHHhhh
Confidence 023567899999999954 4455444444333333
Q ss_pred --CCCcEEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCc
Q psy3476 350 --AEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGD 427 (1417)
Q Consensus 350 --~~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~ 427 (1417)
....+++||||++.. +....+ ...++.+.+..... ... .... + + ....++
T Consensus 347 ~~~~~llil~SAT~~~~-----i~~~~p------~i~~v~~~~~~~i~--~~~-~~~~----------l-~---~~~~~~ 398 (666)
T 3o8b_A 347 TAGARLVVLATATPPGS-----VTVPHP------NIEEVALSNTGEIP--FYG-KAIP----------I-E---AIRGGR 398 (666)
T ss_dssp TTTCSEEEEEESSCTTC-----CCCCCT------TEEEEECBSCSSEE--ETT-EEEC----------G-G---GSSSSE
T ss_pred hcCCceEEEECCCCCcc-----cccCCc------ceEEEeecccchhH--HHH-hhhh----------h-h---hccCCc
Confidence 333478899999631 110000 11111111111100 000 0000 0 1 124789
Q ss_pred EEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCc
Q psy3476 428 VLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGK 507 (1417)
Q Consensus 428 iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~ 507 (1417)
+||||+++++++.+++.|++ .++.+..+||+|++++ |+++..+||||||++|+||||| |++|||+|+
T Consensus 399 vLVFv~Tr~~ae~la~~L~~-----~g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl 465 (666)
T 3o8b_A 399 HLIFCHSKKKCDELAAKLSG-----LGINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNT 465 (666)
T ss_dssp EEEECSCHHHHHHHHHHHHT-----TTCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCE
T ss_pred EEEEeCCHHHHHHHHHHHHh-----CCCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCc
Confidence 99999999999999999987 5788999999999864 4556679999999999999997 999999998
Q ss_pred cccee----cccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHH
Q psy3476 508 VKEMS----YDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQ 555 (1417)
Q Consensus 508 ~k~~~----yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~ 555 (1417)
.+..+ ||+..++.. ...|+|.++|.||+|||||..+|. |.||++.+
T Consensus 466 ~~~~ViNyDydP~~gl~~-~~~P~s~~syiQRiGRtGRg~~G~-i~lvt~~e 515 (666)
T 3o8b_A 466 CVTQTVDFSLDPTFTIET-TTVPQDAVSRSQRRGRTGRGRRGI-YRFVTPGE 515 (666)
T ss_dssp EEEEEEECCCSSSCEEEE-EEEECBHHHHHHHHTTBCSSSCEE-EEESCCCC
T ss_pred cccccccccccccccccc-ccCcCCHHHHHHHhccCCCCCCCE-EEEEecch
Confidence 88664 445555543 357999999999999999944899 99998654
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-32 Score=330.09 Aligned_cols=306 Identities=16% Similarity=0.217 Sum_probs=222.2
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc----C------CCcEEEecchHHHHHHHHHHHHHHHcccc
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA----G------FQRIACTQPRRIACISLSKRVAYETLSQY 108 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~----~------~~~i~~tqPrr~aa~~~a~rva~e~~~~~ 108 (1417)
..+.+|.+++..+.++++++++||||||||.++..++++. . ..+++++.|+|.+|.|+++++.+- ....
T Consensus 78 ~pt~iQ~~ai~~i~~g~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~-~~~~ 156 (434)
T 2db3_A 78 IPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKF-AFES 156 (434)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHH-TTTS
T ss_pred CCCHHHHHHHHHHhcCCCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHH-hccC
Confidence 3568899999999999999999999999999866655432 1 347999999999999998866543 3333
Q ss_pred CCeEEEEEeecc------cccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhH
Q psy3476 109 SNLVGYQIRFEK------HRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPK 182 (1417)
Q Consensus 109 g~~vGy~ir~e~------~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (1417)
+..++....... .......|+++|+|.|++.+...
T Consensus 157 ~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~--------------------------------------- 197 (434)
T 2db3_A 157 YLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRT--------------------------------------- 197 (434)
T ss_dssp SCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT---------------------------------------
T ss_pred CcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhC---------------------------------------
Confidence 333433222111 11235678888888777654321
Q ss_pred HhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCC
Q psy3476 183 RRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPP 262 (1417)
Q Consensus 183 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~ 262 (1417)
T Consensus 198 -------------------------------------------------------------------------------- 197 (434)
T 2db3_A 198 -------------------------------------------------------------------------------- 197 (434)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHH
Q psy3476 263 LHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVI 342 (1417)
Q Consensus 263 ~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~ll 342 (1417)
...+.+++++|+|||| +.++.+|...+.
T Consensus 198 ---------------------------------------------------~~~l~~~~~lVlDEah-~~~~~gf~~~~~ 225 (434)
T 2db3_A 198 ---------------------------------------------------FITFEDTRFVVLDEAD-RMLDMGFSEDMR 225 (434)
T ss_dssp ---------------------------------------------------SCCCTTCCEEEEETHH-HHTSTTTHHHHH
T ss_pred ---------------------------------------------------CcccccCCeEEEccHh-hhhccCcHHHHH
Confidence 0236678999999999 778888888777
Q ss_pred HHHhcc--CCCCcEEEEccCCCH--HHHHHHhccCceEEEeCCc---ccceeEEeccccccccccccCCCCChHHHHHHH
Q psy3476 343 KCLLHS--TAEVKIILMSATINI--ELFHTYFNRIAKIIKVPGR---LYPIQLEYHPIVELDRTKSEKLDPGPYIRILSI 415 (1417)
Q Consensus 343 k~l~~~--r~~~qvIlmSATln~--~~~~~~f~~~~~vi~v~gr---~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~ 415 (1417)
+.+... +++.|+++||||++. +.+...+..+...+.+... ...+...+..... ......+++.
T Consensus 226 ~i~~~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~~----------~~k~~~l~~~ 295 (434)
T 2db3_A 226 RIMTHVTMRPEHQTLMFSATFPEEIQRMAGEFLKNYVFVAIGIVGGACSDVKQTIYEVNK----------YAKRSKLIEI 295 (434)
T ss_dssp HHHHCTTSCSSCEEEEEESCCCHHHHHHHHTTCSSCEEEEESSTTCCCTTEEEEEEECCG----------GGHHHHHHHH
T ss_pred HHHHhcCCCCCceEEEEeccCCHHHHHHHHHhccCCEEEEeccccccccccceEEEEeCc----------HHHHHHHHHH
Confidence 776553 678999999999964 3444333244444444321 1122222211110 0112334444
Q ss_pred HHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCC
Q psy3476 416 IDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSIT 495 (1417)
Q Consensus 416 l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GId 495 (1417)
+.+. .+++||||+++++++.+++.|.+ .++.+..+||++++++|..+++.|++|+.+|||||+++++|||
T Consensus 296 l~~~-----~~~~lVF~~t~~~a~~l~~~L~~-----~~~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlD 365 (434)
T 2db3_A 296 LSEQ-----ADGTIVFVETKRGADFLASFLSE-----KEFPTTSIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLD 365 (434)
T ss_dssp HHHC-----CTTEEEECSSHHHHHHHHHHHHH-----TTCCEEEESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCC
T ss_pred HHhC-----CCCEEEEEeCcHHHHHHHHHHHh-----CCCCEEEEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCC
Confidence 4332 23499999999999999999987 5788999999999999999999999999999999999999999
Q ss_pred cCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHH
Q psy3476 496 IDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEE 554 (1417)
Q Consensus 496 IP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~ 554 (1417)
+|++++||+ ||.|.+. .+|.||+|||||.| +|.|+.+++++
T Consensus 366 i~~v~~VI~--------~d~p~~~----------~~y~qriGR~gR~g~~G~a~~~~~~~ 407 (434)
T 2db3_A 366 IKNIKHVIN--------YDMPSKI----------DDYVHRIGRTGRVGNNGRATSFFDPE 407 (434)
T ss_dssp CTTCCEEEE--------SSCCSSH----------HHHHHHHTTSSCTTCCEEEEEEECTT
T ss_pred cccCCEEEE--------ECCCCCH----------HHHHHHhcccccCCCCCEEEEEEecc
Confidence 999999999 8887654 45559999999999 79999999843
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-33 Score=368.67 Aligned_cols=326 Identities=15% Similarity=0.151 Sum_probs=239.7
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHH--cCCCcEEEecchHHHHHHHHHHHHHHHccccCCeEEEE
Q psy3476 38 LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ--AGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQ 115 (1417)
Q Consensus 38 lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile--~~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy~ 115 (1417)
.+.+.+|.++++.+.++++++|+||||||||+.....+.. ....+++|+.|+|.++.++++++.+..+ |..||..
T Consensus 38 f~l~~~Q~~aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~---~~~v~~l 114 (997)
T 4a4z_A 38 FELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFD---DVNIGLI 114 (997)
T ss_dssp SCCCHHHHHHHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC-----CCEEEE
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcC---CCeEEEE
Confidence 4478999999999999999999999999999753333332 2346799999999999999888876542 3456653
Q ss_pred EeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhccccchhh
Q psy3476 116 IRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEI 195 (1417)
Q Consensus 116 ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 195 (1417)
. .+......++|+|+|+|+|++.+..+
T Consensus 115 ~-G~~~~~~~~~IlV~Tpe~L~~~l~~~---------------------------------------------------- 141 (997)
T 4a4z_A 115 T-GDVQINPDANCLIMTTEILRSMLYRG---------------------------------------------------- 141 (997)
T ss_dssp C-SSCEECTTSSEEEEEHHHHHHHHHHT----------------------------------------------------
T ss_pred e-CCCccCCCCCEEEECHHHHHHHHHhC----------------------------------------------------
Confidence 3 33345567899999999998765322
Q ss_pred hhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCcccccccc
Q psy3476 196 EEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIVAADYF 275 (1417)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~~~~~~~ 275 (1417)
T Consensus 142 -------------------------------------------------------------------------------- 141 (997)
T 4a4z_A 142 -------------------------------------------------------------------------------- 141 (997)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEE
Q psy3476 276 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKII 355 (1417)
Q Consensus 276 l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvI 355 (1417)
...+.++++||||||| +..+.++...+...+...+++.++|
T Consensus 142 --------------------------------------~~~l~~l~lvViDEaH-~l~d~~~g~~~e~ii~~l~~~v~iI 182 (997)
T 4a4z_A 142 --------------------------------------ADLIRDVEFVIFDEVH-YVNDQDRGVVWEEVIIMLPQHVKFI 182 (997)
T ss_dssp --------------------------------------CSGGGGEEEEEECCTT-CCCTTCTTCCHHHHHHHSCTTCEEE
T ss_pred --------------------------------------chhhcCCCEEEEECcc-cccccchHHHHHHHHHhcccCCCEE
Confidence 0234568899999999 6666666666666677778899999
Q ss_pred EEccCC-CHHHHHHHhc----cCceEEEeCCcccceeEEeccccccccccc-----------------------------
Q psy3476 356 LMSATI-NIELFHTYFN----RIAKIIKVPGRLYPIQLEYHPIVELDRTKS----------------------------- 401 (1417)
Q Consensus 356 lmSATl-n~~~~~~~f~----~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~----------------------------- 401 (1417)
+||||+ |...|.+|+. ....++..+.|++|+..++.+.........
T Consensus 183 lLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 262 (997)
T 4a4z_A 183 LLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKT 262 (997)
T ss_dssp EEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-----------
T ss_pred EEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccc
Confidence 999999 7889999996 356788889999998866543110000000
Q ss_pred ------------------------------------------------------cCCCCChHHHHHHHHHhhCCCCCCCc
Q psy3476 402 ------------------------------------------------------EKLDPGPYIRILSIIDKKYPRTERGD 427 (1417)
Q Consensus 402 ------------------------------------------------------~~~~~~~~~~il~~l~~~~~~~~~g~ 427 (1417)
.......+..++..+.. ...++
T Consensus 263 ~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~----~~~~~ 338 (997)
T 4a4z_A 263 DNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRK----RELLP 338 (997)
T ss_dssp ------------------------------------------------------CCCCTTHHHHHHHHHHH----TTCCS
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHh----CCCCC
Confidence 00011112333333332 34679
Q ss_pred EEEEeCCHHHHHHHHHHHHhhhhc----------------------------------cCCcEEEEecCCCCHHHHHHHh
Q psy3476 428 VLIFMSGISEISSIVRAAQEYNEK----------------------------------SQGWIVLPLHSTLSLEEQDRVF 473 (1417)
Q Consensus 428 iLVFl~~~~eie~la~~L~~~~~~----------------------------------~~~~~V~~LHs~Ls~~eR~~v~ 473 (1417)
+||||+++++|+.+++.|....-. .....+..+||+|++.+|..++
T Consensus 339 ~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~ 418 (997)
T 4a4z_A 339 MVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIE 418 (997)
T ss_dssp EEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHH
T ss_pred EEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHH
Confidence 999999999999999888541100 0122588999999999999999
Q ss_pred ccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEe
Q psy3476 474 HYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRL 550 (1417)
Q Consensus 474 ~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L 550 (1417)
+.|++|.++|||||+++++|||+|++.+|+. +.. .||.. ...|+|..+|.||+|||||.| +|.||.+
T Consensus 419 ~~F~~G~~kVLvAT~~~a~GIDiP~~~VVi~-~~~---k~dg~------~~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l 488 (997)
T 4a4z_A 419 ILFSKGFIKVLFATETFAMGLNLPTRTVIFS-SIR---KHDGN------GLRELTPGEFTQMAGRAGRRGLDSTGTVIVM 488 (997)
T ss_dssp HHHHTTCCSEEEECTHHHHSCCCCCSEEEES-CSE---EEETT------EEEECCHHHHHHHHGGGCCTTTCSSEEEEEE
T ss_pred HHHHCCCCcEEEEchHhhCCCCCCCceEEEe-ccc---cccCc------cCCCCCHHHHhHHhcccccCCCCcceEEEEe
Confidence 9999999999999999999999999777774 322 24432 235899999999999999988 7999999
Q ss_pred cC
Q psy3476 551 YS 552 (1417)
Q Consensus 551 ~t 552 (1417)
+.
T Consensus 489 ~~ 490 (997)
T 4a4z_A 489 AY 490 (997)
T ss_dssp CC
T ss_pred cC
Confidence 84
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-32 Score=323.19 Aligned_cols=311 Identities=18% Similarity=0.229 Sum_probs=224.0
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC-----CCcEEEecchHHHHHHHHHHHHHHHccccCCeEE
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG-----FQRIACTQPRRIACISLSKRVAYETLSQYSNLVG 113 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~-----~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vG 113 (1417)
..+.+|.++++.+.+++.+++++|||||||+++..++++.. ..++++..|+|.++.++++++... ....|..++
T Consensus 43 ~~~~~Q~~~i~~i~~~~~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~-~~~~~~~~~ 121 (400)
T 1s2m_A 43 KPSPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTL-GKHCGISCM 121 (400)
T ss_dssp SCCHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH-TTTTTCCEE
T ss_pred CCCHHHHHHHHHHhcCCCEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHH-hcccCceEE
Confidence 36899999999999999999999999999998887777642 347999999999999998876553 334455554
Q ss_pred EEEeecc------cccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhh
Q psy3476 114 YQIRFEK------HRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKML 187 (1417)
Q Consensus 114 y~ir~e~------~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 187 (1417)
....... .......|+++|++.+++.+...
T Consensus 122 ~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~-------------------------------------------- 157 (400)
T 1s2m_A 122 VTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRK-------------------------------------------- 157 (400)
T ss_dssp EECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT--------------------------------------------
T ss_pred EEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhC--------------------------------------------
Confidence 4332211 11245678888887776544221
Q ss_pred ccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCC
Q psy3476 188 KADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGG 267 (1417)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~ 267 (1417)
T Consensus 158 -------------------------------------------------------------------------------- 157 (400)
T 1s2m_A 158 -------------------------------------------------------------------------------- 157 (400)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhc
Q psy3476 268 EIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLH 347 (1417)
Q Consensus 268 ~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~ 347 (1417)
...+.++++||+||+| +..+.++...+...+..
T Consensus 158 ----------------------------------------------~~~~~~~~~vIiDEaH-~~~~~~~~~~~~~i~~~ 190 (400)
T 1s2m_A 158 ----------------------------------------------VADLSDCSLFIMDEAD-KMLSRDFKTIIEQILSF 190 (400)
T ss_dssp ----------------------------------------------CSCCTTCCEEEEESHH-HHSSHHHHHHHHHHHTT
T ss_pred ----------------------------------------------CcccccCCEEEEeCch-HhhhhchHHHHHHHHHh
Confidence 0235678999999999 55666666655555555
Q ss_pred cCCCCcEEEEccCCCHH---HHHHHhccCceEEEeCCccc--ceeEEeccccccccccccCCCCChHHHHHHHHHhhCCC
Q psy3476 348 STAEVKIILMSATINIE---LFHTYFNRIAKIIKVPGRLY--PIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPR 422 (1417)
Q Consensus 348 ~r~~~qvIlmSATln~~---~~~~~f~~~~~vi~v~gr~~--pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~ 422 (1417)
.++..++++||||++.. .+..++. ....+.+..... .+...+.... .......+..+.+.
T Consensus 191 ~~~~~~~i~lSAT~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~k~~~l~~~~~~--- 255 (400)
T 1s2m_A 191 LPPTHQSLLFSATFPLTVKEFMVKHLH-KPYEINLMEELTLKGITQYYAFVE-----------ERQKLHCLNTLFSK--- 255 (400)
T ss_dssp SCSSCEEEEEESCCCHHHHHHHHHHCS-SCEEESCCSSCBCTTEEEEEEECC-----------GGGHHHHHHHHHHH---
T ss_pred CCcCceEEEEEecCCHHHHHHHHHHcC-CCeEEEeccccccCCceeEEEEec-----------hhhHHHHHHHHHhh---
Confidence 66789999999999743 3344442 222222222111 1111111100 01111122222222
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEE
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFV 502 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~V 502 (1417)
...+++||||+++++++.+++.|.+ .++.+..+||+++.++|..+++.|++|+.+|||||+++++|+|+|++++|
T Consensus 256 ~~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~V 330 (400)
T 1s2m_A 256 LQINQAIIFCNSTNRVELLAKKITD-----LGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVV 330 (400)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHH-----HTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEE
T ss_pred cCCCcEEEEEecHHHHHHHHHHHHh-----cCCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEE
Confidence 3467999999999999999999987 46789999999999999999999999999999999999999999999999
Q ss_pred EcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHHh
Q psy3476 503 VDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLL 559 (1417)
Q Consensus 503 IdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~l 559 (1417)
|+ ||.+. |..++.||+|||||.| +|.|+.++++++...+
T Consensus 331 i~--------~~~p~----------s~~~~~Qr~GR~gR~g~~g~~~~l~~~~~~~~~ 370 (400)
T 1s2m_A 331 IN--------FDFPK----------TAETYLHRIGRSGRFGHLGLAINLINWNDRFNL 370 (400)
T ss_dssp EE--------SSCCS----------SHHHHHHHHCBSSCTTCCEEEEEEECGGGHHHH
T ss_pred EE--------eCCCC----------CHHHHHHhcchhcCCCCCceEEEEeccchHHHH
Confidence 99 77664 5566679999999998 8999999998876543
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-32 Score=328.59 Aligned_cols=312 Identities=17% Similarity=0.241 Sum_probs=226.1
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC-----CCcEEEecchHHHHHHHHHHHHHHHccccCCeEE
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG-----FQRIACTQPRRIACISLSKRVAYETLSQYSNLVG 113 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~-----~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vG 113 (1417)
..+.+|.++++.+.+++++++++|||||||.++..++++.. ..++++..|+|.++.|+++++.+ ++...+..++
T Consensus 59 ~~~~~Q~~ai~~i~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~ 137 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLA-LGDYMNVQCH 137 (410)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHH-HTTTTTCCEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHH-HhccCCeEEE
Confidence 46789999999999999999999999999999888887642 35799999999999999887755 3344444554
Q ss_pred EEEeeccc------ccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhh
Q psy3476 114 YQIRFEKH------RREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKML 187 (1417)
Q Consensus 114 y~ir~e~~------~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 187 (1417)
..+..... ......|+++|+|.|++.+...
T Consensus 138 ~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~-------------------------------------------- 173 (410)
T 2j0s_A 138 ACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRR-------------------------------------------- 173 (410)
T ss_dssp EECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTT--------------------------------------------
T ss_pred EEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhC--------------------------------------------
Confidence 43322211 1123467777777766554321
Q ss_pred ccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCC
Q psy3476 188 KADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGG 267 (1417)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~ 267 (1417)
T Consensus 174 -------------------------------------------------------------------------------- 173 (410)
T 2j0s_A 174 -------------------------------------------------------------------------------- 173 (410)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhc
Q psy3476 268 EIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLH 347 (1417)
Q Consensus 268 ~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~ 347 (1417)
...+.++++||+||+| +..+.++...+...+..
T Consensus 174 ----------------------------------------------~~~~~~~~~vViDEah-~~~~~~~~~~~~~i~~~ 206 (410)
T 2j0s_A 174 ----------------------------------------------SLRTRAIKMLVLDEAD-EMLNKGFKEQIYDVYRY 206 (410)
T ss_dssp ----------------------------------------------SSCCTTCCEEEEETHH-HHTSTTTHHHHHHHHTT
T ss_pred ----------------------------------------------CccHhheeEEEEccHH-HHHhhhhHHHHHHHHHh
Confidence 0235678999999999 56666777777777777
Q ss_pred cCCCCcEEEEccCCCHHHH---HHHhccCceEEEeCCccc---ceeEEeccccccccccccCCCCChHHHHHHHHHhhCC
Q psy3476 348 STAEVKIILMSATINIELF---HTYFNRIAKIIKVPGRLY---PIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYP 421 (1417)
Q Consensus 348 ~r~~~qvIlmSATln~~~~---~~~f~~~~~vi~v~gr~~---pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~ 421 (1417)
.+++.++++||||++.+.. ..++ .+...+.+..... .+...+..... .......+...+...
T Consensus 207 ~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~k~~~l~~~~~~~-- 274 (410)
T 2j0s_A 207 LPPATQVVLISATLPHEILEMTNKFM-TDPIRILVKRDELTLEGIKQFFVAVER---------EEWKFDTLCDLYDTL-- 274 (410)
T ss_dssp SCTTCEEEEEESCCCHHHHTTGGGTC-SSCEEECCCGGGCSCTTEEEEEEEESS---------TTHHHHHHHHHHHHH--
T ss_pred CccCceEEEEEcCCCHHHHHHHHHHc-CCCEEEEecCccccCCCceEEEEEeCc---------HHhHHHHHHHHHHhc--
Confidence 7788999999999975422 2333 2333333222111 11111111100 000122333333332
Q ss_pred CCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEE
Q psy3476 422 RTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRF 501 (1417)
Q Consensus 422 ~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~ 501 (1417)
..+++||||+++++++.+++.|.+ .++.+..+||++++++|..+++.|++|+.+|||||+++++|+|+|++++
T Consensus 275 --~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~ 347 (410)
T 2j0s_A 275 --TITQAVIFCNTKRKVDWLTEKMRE-----ANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSL 347 (410)
T ss_dssp --TSSEEEEECSSHHHHHHHHHHHHH-----TTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEE
T ss_pred --CCCcEEEEEcCHHHHHHHHHHHHh-----CCCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCE
Confidence 356899999999999999999987 5678999999999999999999999999999999999999999999999
Q ss_pred EEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHHh
Q psy3476 502 VVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLL 559 (1417)
Q Consensus 502 VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~l 559 (1417)
||+ ||.|. |..+|.||+||+||.| +|.|+.++++.+...+
T Consensus 348 Vi~--------~~~p~----------s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~ 388 (410)
T 2j0s_A 348 IIN--------YDLPN----------NRELYIHRIGRSGRYGRKGVAINFVKNDDIRIL 388 (410)
T ss_dssp EEE--------SSCCS----------SHHHHHHHHTTSSGGGCCEEEEEEEEGGGHHHH
T ss_pred EEE--------ECCCC----------CHHHHHHhcccccCCCCceEEEEEecHHHHHHH
Confidence 999 88765 4556669999999998 8999999998876543
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=315.12 Aligned_cols=314 Identities=18% Similarity=0.241 Sum_probs=226.6
Q ss_pred HhcCCCcHHHHHHHHHHHhcC-CeEEEEcCCCcchhHHHHHHHHHcC----CCcEEEecchHHHHHHHHHHHHHHHcccc
Q psy3476 34 TQNSLPVAQYKQEIIDTVLKE-RVVIIAGDTGCGKSTQIPQYLVQAG----FQRIACTQPRRIACISLSKRVAYETLSQY 108 (1417)
Q Consensus 34 ~r~~lp~~~~q~~il~~i~~~-~~~iI~a~TGsGKTt~ipq~ile~~----~~~i~~tqPrr~aa~~~a~rva~e~~~~~ 108 (1417)
...--..+.+|.++++.+.++ +++++.||||||||+++..++++.. ..+++++.|++.++.++++++....+. .
T Consensus 23 ~~g~~~~~~~Q~~~i~~~~~~~~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~ 101 (367)
T 1hv8_A 23 NKGFEKPTDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGN-K 101 (367)
T ss_dssp HHTCCSCCHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCS-S
T ss_pred HcCCCCCCHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCC-C
Confidence 333345678999999988877 7999999999999999888877643 357999999999999999888776543 2
Q ss_pred CCeEEEEEeeccc-----ccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHH
Q psy3476 109 SNLVGYQIRFEKH-----RREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKR 183 (1417)
Q Consensus 109 g~~vGy~ir~e~~-----~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (1417)
+..++........ ......|+++|++.+++.+...
T Consensus 102 ~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~---------------------------------------- 141 (367)
T 1hv8_A 102 NLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRG---------------------------------------- 141 (367)
T ss_dssp CCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTT----------------------------------------
T ss_pred CceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcC----------------------------------------
Confidence 2233322111110 1124567777777666543221
Q ss_pred hhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCC
Q psy3476 184 RKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPL 263 (1417)
Q Consensus 184 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~ 263 (1417)
T Consensus 142 -------------------------------------------------------------------------------- 141 (367)
T 1hv8_A 142 -------------------------------------------------------------------------------- 141 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHH
Q psy3476 264 HCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIK 343 (1417)
Q Consensus 264 ~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk 343 (1417)
...+.++++||+||+| +..+.++...+.+
T Consensus 142 --------------------------------------------------~~~~~~~~~iIiDEah-~~~~~~~~~~~~~ 170 (367)
T 1hv8_A 142 --------------------------------------------------TLNLKNVKYFILDEAD-EMLNMGFIKDVEK 170 (367)
T ss_dssp --------------------------------------------------CSCTTSCCEEEEETHH-HHHTTTTHHHHHH
T ss_pred --------------------------------------------------CcccccCCEEEEeCch-HhhhhchHHHHHH
Confidence 0235678999999999 4455567666777
Q ss_pred HHhccCCCCcEEEEccCCCHH---HHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhC
Q psy3476 344 CLLHSTAEVKIILMSATINIE---LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKY 420 (1417)
Q Consensus 344 ~l~~~r~~~qvIlmSATln~~---~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~ 420 (1417)
.+...+++.++++||||++.+ .+..++ .+...+..... ..+...+...... .....+.+.+
T Consensus 171 ~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~--------------~~~~~l~~~l 234 (367)
T 1hv8_A 171 ILNACNKDKRILLFSATMPREILNLAKKYM-GDYSFIKAKIN-ANIEQSYVEVNEN--------------ERFEALCRLL 234 (367)
T ss_dssp HHHTSCSSCEEEEECSSCCHHHHHHHHHHC-CSEEEEECCSS-SSSEEEEEECCGG--------------GHHHHHHHHH
T ss_pred HHHhCCCCceEEEEeeccCHHHHHHHHHHc-CCCeEEEecCC-CCceEEEEEeChH--------------HHHHHHHHHH
Confidence 666677889999999999754 334555 34444333221 2222222211110 1122222333
Q ss_pred CCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeE
Q psy3476 421 PRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIR 500 (1417)
Q Consensus 421 ~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~ 500 (1417)
. ..++++||||+++++++.+++.|.+ .++.+..+||+++.++|..+++.|++|+.+|||||+++++|+|+|+++
T Consensus 235 ~-~~~~~~lvf~~~~~~~~~l~~~L~~-----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~ 308 (367)
T 1hv8_A 235 K-NKEFYGLVFCKTKRDTKELASMLRD-----IGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLN 308 (367)
T ss_dssp C-STTCCEEEECSSHHHHHHHHHHHHH-----TTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCS
T ss_pred h-cCCCcEEEEECCHHHHHHHHHHHHh-----cCCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCC
Confidence 2 4567899999999999999999987 567899999999999999999999999999999999999999999999
Q ss_pred EEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHHh
Q psy3476 501 FVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLL 559 (1417)
Q Consensus 501 ~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~l 559 (1417)
+||+ |+.+. |..++.||+|||||.| +|.|+.++++.++..+
T Consensus 309 ~Vi~--------~~~~~----------s~~~~~Q~~GR~~R~g~~g~~~~~~~~~~~~~~ 350 (367)
T 1hv8_A 309 CVIN--------YHLPQ----------NPESYMHRIGRTGRAGKKGKAISIINRREYKKL 350 (367)
T ss_dssp EEEE--------SSCCS----------CHHHHHHHSTTTCCSSSCCEEEEEECTTSHHHH
T ss_pred EEEE--------ecCCC----------CHHHhhhcccccccCCCccEEEEEEcHHHHHHH
Confidence 9999 66654 5666779999999998 8999999998877654
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-33 Score=339.25 Aligned_cols=295 Identities=19% Similarity=0.220 Sum_probs=204.9
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc---CCCcEEEecchHHHHHHHHHHHHHHHccccCCeEEEEEeecc
Q psy3476 44 KQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA---GFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEK 120 (1417)
Q Consensus 44 q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~---~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy~ir~e~ 120 (1417)
+....+.+.++++++|+||||||||++++.++++. ...+++|++|+|.+|.++++++. |..+++......
T Consensus 11 ~~~~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~-------g~~v~~~~~~~~ 83 (459)
T 2z83_A 11 GRGSPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALR-------GLPVRYQTSAVQ 83 (459)
T ss_dssp ----CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTT-------TSCEEECC----
T ss_pred HHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhc-------CceEeEEecccc
Confidence 33345677889999999999999999977776653 33689999999999999887764 455555443322
Q ss_pred -cccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhccccchhhhhHH
Q psy3476 121 -HRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYEIEEEE 199 (1417)
Q Consensus 121 -~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 199 (1417)
..++...+.++|.|.+.+.+..+
T Consensus 84 ~~~t~~~~i~~~~~~~l~~~l~~~-------------------------------------------------------- 107 (459)
T 2z83_A 84 REHQGNEIVDVMCHATLTHRLMSP-------------------------------------------------------- 107 (459)
T ss_dssp ----CCCSEEEEEHHHHHHHHHSC--------------------------------------------------------
T ss_pred cCCCCCcEEEEEchHHHHHHhhcc--------------------------------------------------------
Confidence 12345567777777766654332
Q ss_pred HHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCcccccccccccc
Q psy3476 200 EEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIVAADYFLSSY 279 (1417)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~~~~~~~l~~~ 279 (1417)
T Consensus 108 -------------------------------------------------------------------------------- 107 (459)
T 2z83_A 108 -------------------------------------------------------------------------------- 107 (459)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEcc
Q psy3476 280 DVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSA 359 (1417)
Q Consensus 280 ~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSA 359 (1417)
..++++++|||||||++....++..+++..... +++.|+|+|||
T Consensus 108 -----------------------------------~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~-~~~~~~il~SA 151 (459)
T 2z83_A 108 -----------------------------------NRVPNYNLFVMDEAHFTDPASIAARGYIATKVE-LGEAAAIFMTA 151 (459)
T ss_dssp -----------------------------------C-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECS
T ss_pred -----------------------------------ccccCCcEEEEECCccCCchhhHHHHHHHHHhc-cCCccEEEEEc
Confidence 346789999999999775555555566555433 46899999999
Q ss_pred CCCHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHH
Q psy3476 360 TINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEIS 439 (1417)
Q Consensus 360 Tln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie 439 (1417)
|++.+. ..+...+.++..+. ...+.... . .....+.+ .++++||||+++++++
T Consensus 152 T~~~~~-~~~~~~~~pi~~~~----------~~~~~~~~------~-----~~~~~l~~-----~~~~~LVF~~s~~~~~ 204 (459)
T 2z83_A 152 TPPGTT-DPFPDSNAPIHDLQ----------DEIPDRAW------S-----SGYEWITE-----YAGKTVWFVASVKMGN 204 (459)
T ss_dssp SCTTCC-CSSCCCSSCEEEEE----------CCCCSSCC------S-----SCCHHHHH-----CCSCEEEECSCHHHHH
T ss_pred CCCcch-hhhccCCCCeEEec----------ccCCcchh------H-----HHHHHHHh-----cCCCEEEEeCChHHHH
Confidence 996321 11111122322211 00000000 0 01122222 2679999999999999
Q ss_pred HHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecc--cCC
Q psy3476 440 SIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYD--VTA 517 (1417)
Q Consensus 440 ~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD--~~~ 517 (1417)
.+++.|.. .++.+..+||. +|..+++.|++|+++|||||+++++|||||+ ++|||+|+.+...++ ...
T Consensus 205 ~l~~~L~~-----~g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~ 274 (459)
T 2z83_A 205 EIAMCLQR-----AGKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEG 274 (459)
T ss_dssp HHHHHHHH-----TTCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSC
T ss_pred HHHHHHHh-----cCCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCccccccccccccc
Confidence 99999987 47889999995 7889999999999999999999999999999 999999988877765 222
Q ss_pred CccccceeecCHhhHHhhcCcCCCCC--CCeEEEecCHH
Q psy3476 518 KMSTLQEFWISKASAEQRKGRAGRTG--PGVCYRLYSEE 554 (1417)
Q Consensus 518 ~~~~l~~~~ISkasa~QR~GRAGR~g--~G~cy~L~t~~ 554 (1417)
.+..+...|.|.++|.||+|||||.| +|.||.+++..
T Consensus 275 ~~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~~~~ 313 (459)
T 2z83_A 275 RVILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYGGAT 313 (459)
T ss_dssp EEEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEECSCC
T ss_pred ccccccCCCCCHHHHHHhccccCCCCCCCCeEEEEEccc
Confidence 23232448999999999999999998 89999999764
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-31 Score=321.91 Aligned_cols=205 Identities=19% Similarity=0.281 Sum_probs=144.9
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhc--cC--CCCcEEEEccCCCH--HHHH-HHhccCceEEEeCCcc---cc
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLH--ST--AEVKIILMSATINI--ELFH-TYFNRIAKIIKVPGRL---YP 385 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~--~r--~~~qvIlmSATln~--~~~~-~~f~~~~~vi~v~gr~---~p 385 (1417)
.+.++++||+|||| +..+.++...+...+.. .+ ...++++||||++. +.+. .++ .+...+.+.... ..
T Consensus 172 ~~~~~~~iViDEah-~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 249 (417)
T 2i4i_A 172 GLDFCKYLVLDEAD-RMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFL-DEYIFLAVGRVGSTSEN 249 (417)
T ss_dssp CCTTCCEEEESSHH-HHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHC-SSCEEEEEC----CCSS
T ss_pred ChhhCcEEEEEChh-HhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHc-CCCEEEEeCCCCCCccC
Confidence 35678999999999 55555566665555443 22 26789999999964 3333 444 333333332211 11
Q ss_pred eeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCC
Q psy3476 386 IQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLS 465 (1417)
Q Consensus 386 v~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls 465 (1417)
+...+..... ......+.+.+.. . ..++++||||+++++++.+++.|.+ .++.+..+||+++
T Consensus 250 i~~~~~~~~~----------~~~~~~l~~~l~~-~--~~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~~~h~~~~ 311 (417)
T 2i4i_A 250 ITQKVVWVEE----------SDKRSFLLDLLNA-T--GKDSLTLVFVETKKGADSLEDFLYH-----EGYACTSIHGDRS 311 (417)
T ss_dssp EEEEEEECCG----------GGHHHHHHHHHHT-C--CTTCEEEEECSSHHHHHHHHHHHHH-----TTCCEEEECTTSC
T ss_pred ceEEEEEecc----------HhHHHHHHHHHHh-c--CCCCeEEEEECCHHHHHHHHHHHHH-----CCCCeeEecCCCC
Confidence 1111111100 0112223333332 2 3467899999999999999999987 5788999999999
Q ss_pred HHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-C
Q psy3476 466 LEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-P 544 (1417)
Q Consensus 466 ~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~ 544 (1417)
+++|..+++.|++|+.+|||||+++++|||+|++++||+ ||+|. |..+|.||+|||||.| +
T Consensus 312 ~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~--------~~~p~----------s~~~~~Qr~GR~gR~g~~ 373 (417)
T 2i4i_A 312 QRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVIN--------FDLPS----------DIEEYVHRIGRTGRVGNL 373 (417)
T ss_dssp HHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEE--------SSCCS----------SHHHHHHHHTTBCC--CC
T ss_pred HHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEE--------EcCCC----------CHHHHHHhcCccccCCCC
Confidence 999999999999999999999999999999999999999 87765 4556669999999998 7
Q ss_pred CeEEEecCHHHHHH
Q psy3476 545 GVCYRLYSEEQYSL 558 (1417)
Q Consensus 545 G~cy~L~t~~~~~~ 558 (1417)
|.|+.++++.+...
T Consensus 374 g~~~~~~~~~~~~~ 387 (417)
T 2i4i_A 374 GLATSFFNERNINI 387 (417)
T ss_dssp EEEEEEECGGGGGG
T ss_pred ceEEEEEccccHHH
Confidence 99999999877543
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-32 Score=337.46 Aligned_cols=321 Identities=18% Similarity=0.195 Sum_probs=123.1
Q ss_pred cCCCcHHHHHHHHHHHhcC--CeEEEEcCCCcchhHHHHHHHHHcCC-----CcEEEecchHHHHHHHHHHHHHHHcccc
Q psy3476 36 NSLPVAQYKQEIIDTVLKE--RVVIIAGDTGCGKSTQIPQYLVQAGF-----QRIACTQPRRIACISLSKRVAYETLSQY 108 (1417)
Q Consensus 36 ~~lp~~~~q~~il~~i~~~--~~~iI~a~TGsGKTt~ipq~ile~~~-----~~i~~tqPrr~aa~~~a~rva~e~~~~~ 108 (1417)
.--..+.+|.++++.+..+ ++++++||||||||.++..++++... .+++|+.|+|.+|.|+++++........
T Consensus 111 g~~~p~~~Q~~ai~~il~~~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~ 190 (479)
T 3fmp_B 111 GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (479)
T ss_dssp TCCSCCHHHHHHHHHHTSBSCCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTST
T ss_pred CCCCCCHHHHHHHHHHHcCCCCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCC
Confidence 3344567899999999986 89999999999999998888876432 3799999999999999887765543333
Q ss_pred CCeEEEEEeeccc---ccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhh
Q psy3476 109 SNLVGYQIRFEKH---RREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRK 185 (1417)
Q Consensus 109 g~~vGy~ir~e~~---~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (1417)
+..+++.+..... .....+|+++|+|.|++.+...
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~------------------------------------------ 228 (479)
T 3fmp_B 191 ELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL------------------------------------------ 228 (479)
T ss_dssp TCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTS------------------------------------------
T ss_pred CceEEEEeCCccccccccCCCCEEEECchHHHHHHHhc------------------------------------------
Confidence 4556665543322 2234679999999988766432
Q ss_pred hhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcC
Q psy3476 186 MLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHC 265 (1417)
Q Consensus 186 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~ 265 (1417)
T Consensus 229 -------------------------------------------------------------------------------- 228 (479)
T 3fmp_B 229 -------------------------------------------------------------------------------- 228 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHH
Q psy3476 266 GGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCL 345 (1417)
Q Consensus 266 ~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l 345 (1417)
....+.++++|||||+|.......+...+....
T Consensus 229 -----------------------------------------------~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~ 261 (479)
T 3fmp_B 229 -----------------------------------------------KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQ 261 (479)
T ss_dssp -----------------------------------------------CCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHH
T ss_pred -----------------------------------------------CCcCcccCCEEEEECHHHHhhcCCcHHHHHHHH
Confidence 002245789999999993332245666666666
Q ss_pred hccCCCCcEEEEccCCCHH--HHHHHhccCceEEEeCCccccee---EEeccccccccccccCCCCChHHHHHHHHHhhC
Q psy3476 346 LHSTAEVKIILMSATINIE--LFHTYFNRIAKIIKVPGRLYPIQ---LEYHPIVELDRTKSEKLDPGPYIRILSIIDKKY 420 (1417)
Q Consensus 346 ~~~r~~~qvIlmSATln~~--~~~~~f~~~~~vi~v~gr~~pv~---v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~ 420 (1417)
...+++.++|+||||++.+ .+...+..+...+.+........ ..+..... .......+...+
T Consensus 262 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~ 328 (479)
T 3fmp_B 262 RMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCSS-------------RDEKFQALCNLY 328 (479)
T ss_dssp TTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-------------------------------------------
T ss_pred hhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeCC-------------HHHHHHHHHHHH
Confidence 6667889999999999754 44444434555555443211111 11110000 011122223333
Q ss_pred CCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeE
Q psy3476 421 PRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIR 500 (1417)
Q Consensus 421 ~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~ 500 (1417)
.....+++||||++++.++.+++.|.. .++.+..+||++++.+|..+++.|++|+.+|||||+++++|||+|+++
T Consensus 329 ~~~~~~~~lvF~~s~~~~~~l~~~L~~-----~~~~v~~lh~~~~~~~R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~ 403 (479)
T 3fmp_B 329 GAITIAQAMIFCHTRKTASWLAAELSK-----EGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVS 403 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhccCCceEEEeCcHHHHHHHHHHHHh-----CCccEEEecCCCCHHHHHHHHHHHHcCCCcEEEEccccccCCccccCC
Confidence 334467899999999999999999987 467899999999999999999999999999999999999999999999
Q ss_pred EEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHH
Q psy3476 501 FVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQ 555 (1417)
Q Consensus 501 ~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~ 555 (1417)
+||+ ||.|..... +.|..+|.||+|||||.| +|.|+.+++..+
T Consensus 404 ~VI~--------~d~p~~~~~----~~s~~~~~Qr~GRagR~g~~G~~i~~~~~~~ 447 (479)
T 3fmp_B 404 VVIN--------FDLPVDKDG----NPDNETYLHRIGRTGRFGKRGLAVNMVDSKH 447 (479)
T ss_dssp --------------------------------------------------------
T ss_pred EEEE--------ecCCCCCcc----CCCHHHHHHHhcccccCCCCceEEEEEcCcc
Confidence 9999 887754321 346667779999999998 799999998665
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=99.98 E-value=5.2e-31 Score=312.93 Aligned_cols=310 Identities=19% Similarity=0.229 Sum_probs=219.9
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc-----CCCcEEEecchHHHHHHHHHHHHHHHccccCCeEE
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA-----GFQRIACTQPRRIACISLSKRVAYETLSQYSNLVG 113 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~-----~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vG 113 (1417)
..+.+|.++++.+.+++++++++|||||||.++..++++. +..++++..|+|.++.++++++.+-.....+..++
T Consensus 30 ~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~ 109 (391)
T 1xti_A 30 HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 109 (391)
T ss_dssp SCCHHHHHHHHHHTTTCCEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEE
T ss_pred CCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEE
Confidence 3789999999999999999999999999999887777764 23489999999999999988776543222134444
Q ss_pred EEEeeccc-------ccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhh
Q psy3476 114 YQIRFEKH-------RREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKM 186 (1417)
Q Consensus 114 y~ir~e~~-------~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (1417)
........ ......|+++|++.+++.+...
T Consensus 110 ~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~------------------------------------------- 146 (391)
T 1xti_A 110 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNK------------------------------------------- 146 (391)
T ss_dssp EECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTT-------------------------------------------
T ss_pred EEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcC-------------------------------------------
Confidence 32221110 0122456666666655433211
Q ss_pred hccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCC
Q psy3476 187 LKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCG 266 (1417)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~ 266 (1417)
T Consensus 147 -------------------------------------------------------------------------------- 146 (391)
T 1xti_A 147 -------------------------------------------------------------------------------- 146 (391)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHh
Q psy3476 267 GEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLL 346 (1417)
Q Consensus 267 ~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~ 346 (1417)
...+.++++||+||||...-+.++...+...+.
T Consensus 147 -----------------------------------------------~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~ 179 (391)
T 1xti_A 147 -----------------------------------------------SLNLKHIKHFILDECDKMLEQLDMRRDVQEIFR 179 (391)
T ss_dssp -----------------------------------------------SSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHH
T ss_pred -----------------------------------------------CccccccCEEEEeCHHHHhhccchHHHHHHHHh
Confidence 023667899999999943333466666666666
Q ss_pred ccCCCCcEEEEccCCC--HH-HHHHHhccCceEEEeCCcc----cceeEEeccccccccccccCCCCChHHHHHHHHHhh
Q psy3476 347 HSTAEVKIILMSATIN--IE-LFHTYFNRIAKIIKVPGRL----YPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKK 419 (1417)
Q Consensus 347 ~~r~~~qvIlmSATln--~~-~~~~~f~~~~~vi~v~gr~----~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~ 419 (1417)
..++..++++||||++ .. .+..++ .....+.+.... ..+...+..... ......+...+..
T Consensus 180 ~~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~~l~~- 247 (391)
T 1xti_A 180 MTPHEKQVMMFSATLSKEIRPVCRKFM-QDPMEIFVDDETKLTLHGLQQYYVKLKD----------NEKNRKLFDLLDV- 247 (391)
T ss_dssp TSCSSSEEEEEESSCCSTHHHHHHHHC-SSCEEEECCCCCCCCCTTCEEEEEECCG----------GGHHHHHHHHHHH-
T ss_pred hCCCCceEEEEEeeCCHHHHHHHHHHc-CCCeEEEecCccccCcccceEEEEEcCc----------hhHHHHHHHHHHh-
Confidence 6677899999999994 33 344555 344444433221 111111111110 0112233333332
Q ss_pred CCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCe
Q psy3476 420 YPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGI 499 (1417)
Q Consensus 420 ~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V 499 (1417)
...+++||||+++++++.+++.|.+ .++.+..+||+++.++|..+++.|++|+.+|||||+++++|+|+|++
T Consensus 248 ---~~~~~~lvf~~~~~~~~~l~~~L~~-----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~ 319 (391)
T 1xti_A 248 ---LEFNQVVIFVKSVQRCIALAQLLVE-----QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERV 319 (391)
T ss_dssp ---SCCSEEEEECSCHHHHHHHHHHHHH-----TTCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTE
T ss_pred ---cCCCcEEEEeCcHHHHHHHHHHHHh-----CCCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccC
Confidence 2468999999999999999999987 56789999999999999999999999999999999999999999999
Q ss_pred EEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHH
Q psy3476 500 RFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQY 556 (1417)
Q Consensus 500 ~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~ 556 (1417)
++||+ ||.+. |..++.||+|||||.| +|.|+.++++++.
T Consensus 320 ~~Vi~--------~~~p~----------s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~ 359 (391)
T 1xti_A 320 NIAFN--------YDMPE----------DSDTYLHRVARAGRFGTKGLAITFVSDEND 359 (391)
T ss_dssp EEEEE--------SSCCS----------SHHHHHHHHCBCSSSCCCCEEEEEECSHHH
T ss_pred CEEEE--------eCCCC----------CHHHHHHhcccccCCCCceEEEEEEcccch
Confidence 99999 77765 5566669999999998 7999999986643
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=7.3e-31 Score=346.57 Aligned_cols=327 Identities=17% Similarity=0.195 Sum_probs=240.8
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc--CCCcEEEecchHHHHHHHHHHHHHHHccccCCeEEE
Q psy3476 37 SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA--GFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGY 114 (1417)
Q Consensus 37 ~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~--~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy 114 (1417)
....+.+|.++++.+.++++++|+||||||||+++...++.. ...+++++.|+|.++.|.++++....+ .||.
T Consensus 84 ~f~L~~~Q~eai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~-----~vgl 158 (1010)
T 2xgj_A 84 PFTLDPFQDTAISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG-----DVGL 158 (1010)
T ss_dssp SSCCCHHHHHHHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHS-----CEEE
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhC-----CEEE
Confidence 345789999999999999999999999999999765555442 336899999999999999988877654 5665
Q ss_pred EEeecccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhccccchh
Q psy3476 115 QIRFEKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNAYE 194 (1417)
Q Consensus 115 ~ir~e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 194 (1417)
. .++....+...|+++|+++|.+.+..+
T Consensus 159 l-tGd~~~~~~~~IvV~Tpe~L~~~L~~~--------------------------------------------------- 186 (1010)
T 2xgj_A 159 M-TGDITINPDAGCLVMTTEILRSMLYRG--------------------------------------------------- 186 (1010)
T ss_dssp E-CSSCEECTTCSEEEEEHHHHHHHHHHT---------------------------------------------------
T ss_pred E-eCCCccCCCCCEEEEcHHHHHHHHHcC---------------------------------------------------
Confidence 3 334445567899999999988755321
Q ss_pred hhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCccccccc
Q psy3476 195 IEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIVAADY 274 (1417)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~~~~~~ 274 (1417)
T Consensus 187 -------------------------------------------------------------------------------- 186 (1010)
T 2xgj_A 187 -------------------------------------------------------------------------------- 186 (1010)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcE
Q psy3476 275 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKI 354 (1417)
Q Consensus 275 ~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qv 354 (1417)
...+.++++|||||+| +..+.+....+...+...+++.++
T Consensus 187 ---------------------------------------~~~l~~l~lVViDEaH-~l~d~~rg~~~e~il~~l~~~~~i 226 (1010)
T 2xgj_A 187 ---------------------------------------SEVMREVAWVIFDEVH-YMRDKERGVVWEETIILLPDKVRY 226 (1010)
T ss_dssp ---------------------------------------CTTGGGEEEEEEETGG-GGGCTTTHHHHHHHHHHSCTTCEE
T ss_pred ---------------------------------------cchhhcCCEEEEechh-hhcccchhHHHHHHHHhcCCCCeE
Confidence 0235578899999999 555544444444555566788999
Q ss_pred EEEccCC-CHHHHHHHhc----cCceEEEeCCcccceeEEecccccccc----ccccC------------CC--------
Q psy3476 355 ILMSATI-NIELFHTYFN----RIAKIIKVPGRLYPIQLEYHPIVELDR----TKSEK------------LD-------- 405 (1417)
Q Consensus 355 IlmSATl-n~~~~~~~f~----~~~~vi~v~gr~~pv~v~~~~~~~~~~----~~~~~------------~~-------- 405 (1417)
|+||||+ |...+++|+. ..+.++..+.++.|+..++.+...... ..... +.
T Consensus 227 l~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 306 (1010)
T 2xgj_A 227 VFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPN 306 (1010)
T ss_dssp EEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC--------
T ss_pred EEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhccccc
Confidence 9999999 7888889874 257778888898888776654220000 00000 00
Q ss_pred ---------------------CChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhc-------------
Q psy3476 406 ---------------------PGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEK------------- 451 (1417)
Q Consensus 406 ---------------------~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~------------- 451 (1417)
......++..+.. ...+++||||+++..++.+++.|....-.
T Consensus 307 ~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~----~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~ 382 (1010)
T 2xgj_A 307 STDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWK----KKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFN 382 (1010)
T ss_dssp ----------------------CHHHHHHHHHHH----HTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccchHHHHHHHHHHHh----cCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHH
Confidence 1112223333322 23568999999999999999888641100
Q ss_pred ---------c------------CCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccc
Q psy3476 452 ---------S------------QGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKE 510 (1417)
Q Consensus 452 ---------~------------~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~ 510 (1417)
. ....+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||++ .
T Consensus 383 ~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~----~ 458 (1010)
T 2xgj_A 383 NAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS----V 458 (1010)
T ss_dssp HHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC----S
T ss_pred HHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC----C
Confidence 0 01238899999999999999999999999999999999999999999999983 2
Q ss_pred eecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHH
Q psy3476 511 MSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEE 554 (1417)
Q Consensus 511 ~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~ 554 (1417)
..||... ..|+|.++|.||+|||||.| .|.||.++++.
T Consensus 459 ~kfd~~~------~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~ 499 (1010)
T 2xgj_A 459 RKWDGQQ------FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEK 499 (1010)
T ss_dssp EEECSSC------EEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSC
T ss_pred cccCCcC------CccCCHHHHhHhhhhcccCCCCCceEEEEEECCC
Confidence 3466542 35889999999999999998 49999999753
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-32 Score=334.71 Aligned_cols=199 Identities=21% Similarity=0.187 Sum_probs=145.8
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEecccc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIV 394 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~ 394 (1417)
..+.++++|||||||.+....+....++... ...++.|+|+||||++.+....++ .+.+++.+. +..|..
T Consensus 106 ~~l~~~~~iViDEah~~~~~~~~~~~~~~~~-~~~~~~~~i~~SAT~~~~~~~~~~-~~~~~~~~~-~~~p~~------- 175 (451)
T 2jlq_A 106 TRVPNYNLIVMDEAHFTDPCSVAARGYISTR-VEMGEAAAIFMTATPPGSTDPFPQ-SNSPIEDIE-REIPER------- 175 (451)
T ss_dssp SCCCCCSEEEEETTTCCSHHHHHHHHHHHHH-HHTTSCEEEEECSSCTTCCCSSCC-CSSCEEEEE-CCCCSS-------
T ss_pred ccccCCCEEEEeCCccCCcchHHHHHHHHHh-hcCCCceEEEEccCCCccchhhhc-CCCceEecC-ccCCch-------
Confidence 3467899999999995533333333333222 235689999999999653322222 344444332 222210
Q ss_pred ccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhc
Q psy3476 395 ELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFH 474 (1417)
Q Consensus 395 ~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~ 474 (1417)
.+. .+...+.+ ..+++||||+++++++.+++.|.+ .++.+..+||.+ ++++++
T Consensus 176 --~~~-----------~~~~~l~~-----~~~~~lVF~~s~~~a~~l~~~L~~-----~g~~~~~lh~~~----~~~~~~ 228 (451)
T 2jlq_A 176 --SWN-----------TGFDWITD-----YQGKTVWFVPSIKAGNDIANCLRK-----SGKRVIQLSRKT----FDTEYP 228 (451)
T ss_dssp --CCS-----------SSCHHHHH-----CCSCEEEECSSHHHHHHHHHHHHT-----TTCCEEEECTTT----HHHHGG
T ss_pred --hhH-----------HHHHHHHh-----CCCCEEEEcCCHHHHHHHHHHHHH-----cCCeEEECCHHH----HHHHHH
Confidence 000 01122222 257899999999999999999987 467899999975 467999
Q ss_pred cCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccce---eecCHhhHHhhcCcCCCCC--CCeEEE
Q psy3476 475 YAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQE---FWISKASAEQRKGRAGRTG--PGVCYR 549 (1417)
Q Consensus 475 ~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~---~~ISkasa~QR~GRAGR~g--~G~cy~ 549 (1417)
.|++|+.+|||||+++|+|||||+ ++|||+|+.+...|| ..+...+.. .|.|.++|.||+|||||.| +|.||.
T Consensus 229 ~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d-~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~ 306 (451)
T 2jlq_A 229 KTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVIL-TDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYV 306 (451)
T ss_dssp GGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEE-CSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEE
T ss_pred hhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccc-ccccceeeecccccCCHHHHHHhccccCCCCCCCccEEE
Confidence 999999999999999999999999 999999999999888 445566655 8999999999999999999 799998
Q ss_pred ecC
Q psy3476 550 LYS 552 (1417)
Q Consensus 550 L~t 552 (1417)
++.
T Consensus 307 ~~~ 309 (451)
T 2jlq_A 307 FSG 309 (451)
T ss_dssp ECS
T ss_pred EeC
Confidence 865
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=302.53 Aligned_cols=302 Identities=19% Similarity=0.240 Sum_probs=215.4
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCCCcEEEecchHHHHHHHHHHHHHHHccccCCeEEEEEe
Q psy3476 38 LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIR 117 (1417)
Q Consensus 38 lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy~ir 117 (1417)
-..+.+|.++++.+.+++++++++|||||||.++..++++.+ .+++++.|++.++.++++++.+. +...+..++....
T Consensus 15 ~~l~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~~-~~~liv~P~~~L~~q~~~~~~~~-~~~~~~~~~~~~~ 92 (337)
T 2z0m_A 15 KNFTEVQSKTIPLMLQGKNVVVRAKTGSGKTAAYAIPILELG-MKSLVVTPTRELTRQVASHIRDI-GRYMDTKVAEVYG 92 (337)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHT-CCEEEECSSHHHHHHHHHHHHHH-TTTSCCCEEEECT
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEcCCCCcHHHHHHHHHHhhc-CCEEEEeCCHHHHHHHHHHHHHH-hhhcCCcEEEEEC
Confidence 346789999999999999999999999999999888888764 57888889999999998877643 3333444443322
Q ss_pred eccc-----ccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhccccc
Q psy3476 118 FEKH-----RREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKADNA 192 (1417)
Q Consensus 118 ~e~~-----~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 192 (1417)
.... ......|+++|++.|++.+...
T Consensus 93 ~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~------------------------------------------------- 123 (337)
T 2z0m_A 93 GMPYKAQINRVRNADIVVATPGRLLDLWSKG------------------------------------------------- 123 (337)
T ss_dssp TSCHHHHHHHHTTCSEEEECHHHHHHHHHTT-------------------------------------------------
T ss_pred CcchHHHHhhcCCCCEEEECHHHHHHHHHcC-------------------------------------------------
Confidence 1111 0123567777777766543221
Q ss_pred hhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCccccc
Q psy3476 193 YEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEIVAA 272 (1417)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~~~~ 272 (1417)
T Consensus 124 -------------------------------------------------------------------------------- 123 (337)
T 2z0m_A 124 -------------------------------------------------------------------------------- 123 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCC
Q psy3476 273 DYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEV 352 (1417)
Q Consensus 273 ~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~ 352 (1417)
...+.++++||+||+| +..+.++...+...+...+...
T Consensus 124 -----------------------------------------~~~~~~~~~iViDEah-~~~~~~~~~~~~~~~~~~~~~~ 161 (337)
T 2z0m_A 124 -----------------------------------------VIDLSSFEIVIIDEAD-LMFEMGFIDDIKIILAQTSNRK 161 (337)
T ss_dssp -----------------------------------------SCCGGGCSEEEEESHH-HHHHTTCHHHHHHHHHHCTTCS
T ss_pred -----------------------------------------CcchhhCcEEEEEChH-HhhccccHHHHHHHHhhCCccc
Confidence 0124567899999999 4444455555555555666788
Q ss_pred cEEEEccCCCHH---HHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEE
Q psy3476 353 KIILMSATINIE---LFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429 (1417)
Q Consensus 353 qvIlmSATln~~---~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iL 429 (1417)
++++||||++.. .+..++ .+...+........+...+..... .....+..+. ...++++|
T Consensus 162 ~~~~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~----~~~~~~~l 224 (337)
T 2z0m_A 162 ITGLFSATIPEEIRKVVKDFI-TNYEEIEACIGLANVEHKFVHVKD------------DWRSKVQALR----ENKDKGVI 224 (337)
T ss_dssp EEEEEESCCCHHHHHHHHHHS-CSCEEEECSGGGGGEEEEEEECSS------------SSHHHHHHHH----TCCCSSEE
T ss_pred EEEEEeCcCCHHHHHHHHHhc-CCceeeecccccCCceEEEEEeCh------------HHHHHHHHHH----hCCCCcEE
Confidence 899999999744 455666 344444333222223222221110 1112233332 24578899
Q ss_pred EEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCccc
Q psy3476 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVK 509 (1417)
Q Consensus 430 VFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k 509 (1417)
|||+++++++.+++.|. .+..+||+++.++|.++++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 225 vf~~~~~~~~~l~~~l~---------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~----- 290 (337)
T 2z0m_A 225 VFVRTRNRVAKLVRLFD---------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVIN----- 290 (337)
T ss_dssp EECSCHHHHHHHHTTCT---------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEE-----
T ss_pred EEEcCHHHHHHHHHHhh---------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEE-----
Confidence 99999999999887764 3788999999999999999999999999999999999999999999999
Q ss_pred ceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHH
Q psy3476 510 EMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYS 557 (1417)
Q Consensus 510 ~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~ 557 (1417)
|+++. |..++.||+|||||.| +|.|+.++. .+..
T Consensus 291 ---~~~~~----------s~~~~~Q~~GR~gR~g~~g~~~~~~~-~~~~ 325 (337)
T 2z0m_A 291 ---FDAPQ----------DLRTYIHRIGRTGRMGRKGEAITFIL-NEYW 325 (337)
T ss_dssp ---SSCCS----------SHHHHHHHHTTBCGGGCCEEEEEEES-SCHH
T ss_pred ---ecCCC----------CHHHhhHhcCccccCCCCceEEEEEe-CcHH
Confidence 77765 4556669999999998 799999988 4433
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.8e-31 Score=332.12 Aligned_cols=280 Identities=17% Similarity=0.175 Sum_probs=195.9
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccC-CCCcEEEEccCCC-HHHHHHHhccCceEEEeCCcccceeEEeccc
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHST-AEVKIILMSATIN-IELFHTYFNRIAKIIKVPGRLYPIQLEYHPI 393 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r-~~~qvIlmSATln-~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~ 393 (1417)
....+++|||||+| +..+.++...+...+...+ .+.+++++|||.+ .+.+....+.... +....+..|.....
T Consensus 236 l~~~v~lvVIDEaH-~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~l~~~~~~~~~-v~~~~r~~~l~~~~--- 310 (677)
T 3rc3_A 236 VTTPYEVAVIDEIQ-MIRDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVMELMYTTGEEVE-VRDYKRLTPISVLD--- 310 (677)
T ss_dssp SSSCEEEEEECSGG-GGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHHHHHHHTCCEE-EEECCCSSCEEECS---
T ss_pred hcccCCEEEEecce-ecCCccchHHHHHHHHccCccceEEEeccchHHHHHHHHHhcCCceE-EEEeeecchHHHHH---
Confidence 35678999999999 4577778888777777776 7889999999963 3344444422222 22222222222110
Q ss_pred cccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHh
Q psy3476 394 VELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVF 473 (1417)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~ 473 (1417)
..+ ..+.+ ...| .+|||+++++++.+++.|.+ .++.+.++||+|++++|..++
T Consensus 311 --------~~l---------~~l~~----~~~g-~iIf~~s~~~ie~la~~L~~-----~g~~v~~lHG~L~~~~R~~~~ 363 (677)
T 3rc3_A 311 --------HAL---------ESLDN----LRPG-DCIVCFSKNDIYSVSRQIEI-----RGLESAVIYGSLPPGTKLAQA 363 (677)
T ss_dssp --------SCC---------CSGGG----CCTT-EEEECSSHHHHHHHHHHHHH-----TTCCCEEECTTSCHHHHHHHH
T ss_pred --------HHH---------HHHHh----cCCC-CEEEEcCHHHHHHHHHHHHh-----cCCCeeeeeccCCHHHHHHHH
Confidence 000 00011 1233 47889999999999999987 468899999999999999999
Q ss_pred ccCCC--CCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC----CCeE
Q psy3476 474 HYAPE--GLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG----PGVC 547 (1417)
Q Consensus 474 ~~f~~--G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g----~G~c 547 (1417)
+.|++ |.++|||||+++++|||| +|++||++|..|. .||+..+. . ..|+|.++|.||+|||||.| +|.|
T Consensus 364 ~~F~~~~g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~-~~~~~G~~-~--~~p~s~~~~~QR~GRAGR~g~~g~~G~v 438 (677)
T 3rc3_A 364 KKFNDPNDPCKILVATDAIGMGLNL-SIRRIIFYSLIKP-SINEKGER-E--LEPITTSQALQIAGRAGRFSSRFKEGEV 438 (677)
T ss_dssp HHHHCTTSSCCEEEECGGGGSSCCC-CBSEEEESCSBC---------------CBCCHHHHHHHHTTBTCTTSSCSSEEE
T ss_pred HHHHccCCCeEEEEeCcHHHCCcCc-CccEEEECCcccc-ccccCCcc-c--cccCCHHHHHHHhcCCCCCCCCCCCEEE
Confidence 99998 999999999999999999 8999999998877 67665322 2 45999999999999999998 4899
Q ss_pred EEecCHH--HHHHhhccCCCcccccChHHHHHHHHhhCCCCCcCCCCCCCCCcchhHHHHHHHHhcCCCCCCCC------
Q psy3476 548 YRLYSEE--QYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKER------ 619 (1417)
Q Consensus 548 y~L~t~~--~~~~l~~~~~pEI~r~~L~~~lL~lk~lgi~~~~~f~~l~pP~~~~l~~Al~~L~~lGaId~~~~------ 619 (1417)
|.+++++ .+..+.....++|.+.++....++++.++.. ++...+...++.+...+.++....
T Consensus 439 ~~l~~~d~~~~~~~~~~~~~~i~~~~l~p~~~~l~~~~~~----------l~~~~l~ell~~l~~~~~vd~~f~~~~l~~ 508 (677)
T 3rc3_A 439 TTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYH----------LPDATLSNLIDIFVDFSQVDGQYFVCNMDD 508 (677)
T ss_dssp EESSTTHHHHHHHHHHSCCCCCCCEEECCCHHHHHHHHHH----------STTSCHHHHHHHHHHHCBCCTTEEECCCHH
T ss_pred EEEecchHHHHHHHHhcCcchhhhccCCChHHHHHHHhcc----------CCcchHHHHHHHHHHhhcccchhhccchHH
Confidence 9999877 5667888899999998888888888877621 123346777777888877774321
Q ss_pred cChhhhhccCCCCChhhHHHHHh
Q psy3476 620 VTSLGRFLSDLPVDIPLGKMLVF 642 (1417)
Q Consensus 620 lT~LG~~ls~lpldp~lak~Ll~ 642 (1417)
...++..+..+|++...--.++.
T Consensus 509 ~~~la~~l~~~~L~~~~~~~f~~ 531 (677)
T 3rc3_A 509 FKFSAELIQHIPLSLRVRYVFCT 531 (677)
T ss_dssp HHHHHHHTTTSCCCHHHHHHHHH
T ss_pred HHHHHHHHhhCCCCHHHHhheEe
Confidence 23455556666665555444433
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-32 Score=340.57 Aligned_cols=299 Identities=18% Similarity=0.186 Sum_probs=215.2
Q ss_pred HhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc---CCCcEEEecchHHHHHHHHHHHHHHHccccCC
Q psy3476 34 TQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA---GFQRIACTQPRRIACISLSKRVAYETLSQYSN 110 (1417)
Q Consensus 34 ~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~---~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~ 110 (1417)
.+..+|++.+ .++.+.++++++++||||||||+++...+++. ...+++|+.|+|.+|.|+++.+. |.
T Consensus 169 ~~~~lpiq~~---~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~-------~~ 238 (618)
T 2whx_A 169 ERIGEPDYEV---DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALR-------GL 238 (618)
T ss_dssp CCCCCCCCCC---CGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTT-------TS
T ss_pred cccCCCcccc---CHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhc-------CC
Confidence 3788999765 38899999999999999999999865544432 33589999999998888876553 45
Q ss_pred eEEEEEee-cccccCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhhcc
Q psy3476 111 LVGYQIRF-EKHRREKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKMLKA 189 (1417)
Q Consensus 111 ~vGy~ir~-e~~~~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 189 (1417)
.++|+++. +...++.+.+.++|.|.+.+.+..+
T Consensus 239 ~v~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~---------------------------------------------- 272 (618)
T 2whx_A 239 PIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSS---------------------------------------------- 272 (618)
T ss_dssp CEEECCTTSSCCCCSSSCEEEEEHHHHHHHHHHC----------------------------------------------
T ss_pred ceeEecccceeccCCCceEEEEChHHHHHHHhcc----------------------------------------------
Confidence 67776653 3334556667777777666544321
Q ss_pred ccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCCcc
Q psy3476 190 DNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGGEI 269 (1417)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~~~ 269 (1417)
T Consensus 273 -------------------------------------------------------------------------------- 272 (618)
T 2whx_A 273 -------------------------------------------------------------------------------- 272 (618)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhcc-
Q psy3476 270 VAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHS- 348 (1417)
Q Consensus 270 ~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~- 348 (1417)
..+.++++|||||||++ +.++...+.......
T Consensus 273 ---------------------------------------------~~l~~~~~iViDEah~~--~~~~~~~~~~i~~~l~ 305 (618)
T 2whx_A 273 ---------------------------------------------TRVPNYNLIVMDEAHFT--DPCSVAARGYISTRVE 305 (618)
T ss_dssp ---------------------------------------------SSCCCCSEEEEESTTCC--SHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------ccccCCeEEEEECCCCC--CccHHHHHHHHHHHhc
Confidence 34778999999999965 433333222222222
Q ss_pred CCCCcEEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcE
Q psy3476 349 TAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428 (1417)
Q Consensus 349 r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~i 428 (1417)
+++.|+|+||||++.. ...+...+.+.+.+..+ + +. .. . ..++..+.+ ..+++
T Consensus 306 ~~~~q~il~SAT~~~~-~~~~~~~~~~~~~v~~~-------~-~~--~~------~-----~~ll~~l~~-----~~~~~ 358 (618)
T 2whx_A 306 MGEAAAIFMTATPPGS-TDPFPQSNSPIEDIERE-------I-PE--RS------W-----NTGFDWITD-----YQGKT 358 (618)
T ss_dssp HTSCEEEEECSSCTTC-CCSSCCCSSCEEEEECC-------C-CS--SC------C-----SSSCHHHHH-----CCSCE
T ss_pred ccCccEEEEECCCchh-hhhhhccCCceeeeccc-------C-CH--HH------H-----HHHHHHHHh-----CCCCE
Confidence 3688999999999533 12233223333332221 1 10 00 0 011222322 26789
Q ss_pred EEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcc
Q psy3476 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKV 508 (1417)
Q Consensus 429 LVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~ 508 (1417)
||||+++++++.+++.|.+ .++.+..+||. +|.++++.|++|+.+||||||++++||||| +++|||+|..
T Consensus 359 LVF~~s~~~a~~l~~~L~~-----~g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~ 428 (618)
T 2whx_A 359 VWFVPSIKAGNDIANCLRK-----SGKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRC 428 (618)
T ss_dssp EEECSSHHHHHHHHHHHHH-----TTCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEE
T ss_pred EEEECChhHHHHHHHHHHH-----cCCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcce
Confidence 9999999999999999987 46789999984 788899999999999999999999999998 9999999998
Q ss_pred cceec--ccCCCccccceeecCHhhHHhhcCcCCCCC--CCeEEEecC
Q psy3476 509 KEMSY--DVTAKMSTLQEFWISKASAEQRKGRAGRTG--PGVCYRLYS 552 (1417)
Q Consensus 509 k~~~y--D~~~~~~~l~~~~ISkasa~QR~GRAGR~g--~G~cy~L~t 552 (1417)
+...+ +...++......|+|.++|.||+|||||.| +|.||.+++
T Consensus 429 ~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~~ 476 (618)
T 2whx_A 429 LKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFSG 476 (618)
T ss_dssp EEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECS
T ss_pred ecceecccCCCceEEcccccCCHHHHHHhccccCCCCCCCCeEEEEcc
Confidence 77665 333345556677999999999999999996 899999997
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-31 Score=317.36 Aligned_cols=314 Identities=18% Similarity=0.233 Sum_probs=116.1
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc-----CCCcEEEecchHHHHHHHHHHHHHHHccccCCeE
Q psy3476 38 LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA-----GFQRIACTQPRRIACISLSKRVAYETLSQYSNLV 112 (1417)
Q Consensus 38 lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~-----~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~v 112 (1417)
-..+.+|.++++.+.+++.+++++|||||||.++..++++. ...++++..|+|..+.++++++.+.. ...+..+
T Consensus 42 ~~~~~~Q~~~i~~i~~~~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~-~~~~~~~ 120 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALA-FHMDIKV 120 (394)
T ss_dssp CSCCHHHHHHHHHHHHTCCEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHT-TTSCCCE
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHh-ccCCeeE
Confidence 35678999999999999999999999999999877777654 23589999999999999888765543 3334444
Q ss_pred EEEEeecccc-----cCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHhhhh
Q psy3476 113 GYQIRFEKHR-----REKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRRKML 187 (1417)
Q Consensus 113 Gy~ir~e~~~-----~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 187 (1417)
+......... .....|+++|++.+++.+...
T Consensus 121 ~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~-------------------------------------------- 156 (394)
T 1fuu_A 121 HACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRR-------------------------------------------- 156 (394)
T ss_dssp EEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTT--------------------------------------------
T ss_pred EEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhC--------------------------------------------
Confidence 4332211110 013567777777766544321
Q ss_pred ccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCcCCC
Q psy3476 188 KADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLHCGG 267 (1417)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~~~~ 267 (1417)
T Consensus 157 -------------------------------------------------------------------------------- 156 (394)
T 1fuu_A 157 -------------------------------------------------------------------------------- 156 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchHHHHHHHHhc
Q psy3476 268 EIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLH 347 (1417)
Q Consensus 268 ~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~ 347 (1417)
...+.++++||+||+| +..+.++...+...+..
T Consensus 157 ----------------------------------------------~~~~~~~~~vIiDEah-~~~~~~~~~~~~~~~~~ 189 (394)
T 1fuu_A 157 ----------------------------------------------RFRTDKIKMFILDEAD-EMLSSGFKEQIYQIFTL 189 (394)
T ss_dssp ----------------------------------------------SSCCTTCCEEEEETHH-HHHHTTCHHHHHHHHHH
T ss_pred ----------------------------------------------CcchhhCcEEEEEChH-HhhCCCcHHHHHHHHHh
Confidence 0235678999999999 44455566666666666
Q ss_pred cCCCCcEEEEccCCCHH---HHHHHhccCceEEEeCCcccce---eEEeccccccccccccCCCCChHHHHHHHHHhhCC
Q psy3476 348 STAEVKIILMSATINIE---LFHTYFNRIAKIIKVPGRLYPI---QLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYP 421 (1417)
Q Consensus 348 ~r~~~qvIlmSATln~~---~~~~~f~~~~~vi~v~gr~~pv---~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~ 421 (1417)
.++..++++||||++.. .+..++ .+...+.+....... ...+...... ......+.+.+.
T Consensus 190 ~~~~~~~i~~SAT~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~ 255 (394)
T 1fuu_A 190 LPPTTQVVLLSATMPNDVLEVTTKFM-RNPVRILVKKDELTLEGIKQFYVNVEEE-------------EYKYECLTDLYD 255 (394)
T ss_dssp SCTTCEEEEECSSCCHHHHHHHHHHC-CSCEEEEECC-------------------------------------------
T ss_pred CCCCceEEEEEEecCHHHHHHHHHhc-CCCeEEEecCccccCCCceEEEEEcCch-------------hhHHHHHHHHHh
Confidence 77889999999999743 344555 333333333221111 1111100000 001122222333
Q ss_pred CCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEE
Q psy3476 422 RTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRF 501 (1417)
Q Consensus 422 ~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~ 501 (1417)
....+++||||+++++++.+++.|.+ .++.+..+||+++.++|..+++.|++|..+|||||+++++|+|+|++++
T Consensus 256 ~~~~~~~lVf~~~~~~~~~l~~~L~~-----~~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~ 330 (394)
T 1fuu_A 256 SISVTQAVIFCNTRRKVEELTTKLRN-----DKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSL 330 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCcEEEEECCHHHHHHHHHHHHH-----cCCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCE
Confidence 33467899999999999999999976 5678999999999999999999999999999999999999999999999
Q ss_pred EEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHHhh
Q psy3476 502 VVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLLA 560 (1417)
Q Consensus 502 VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~l~ 560 (1417)
||+ ||++.+.. ++.||+||+||.| +|.|+.++++++...+.
T Consensus 331 Vi~--------~~~p~s~~----------~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~ 372 (394)
T 1fuu_A 331 VIN--------YDLPANKE----------NYIHRIGRGGRFGRKGVAINFVTNEDVGAMR 372 (394)
T ss_dssp ------------------------------------------------------------
T ss_pred EEE--------eCCCCCHH----------HHHHHcCcccCCCCCceEEEEEchhHHHHHH
Confidence 999 77765444 4559999999998 89999999988766543
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=99.97 E-value=5.3e-31 Score=329.60 Aligned_cols=213 Identities=17% Similarity=0.234 Sum_probs=147.3
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHH---hc----cCCCCcEEEEccCCC--HHHHHHHhccCceEEEeCCc--cc
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCL---LH----STAEVKIILMSATIN--IELFHTYFNRIAKIIKVPGR--LY 384 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l---~~----~r~~~qvIlmSATln--~~~~~~~f~~~~~vi~v~gr--~~ 384 (1417)
.++++++||||||| +..+.+|...+...+ .. ..++.|+++||||++ ...+..++......+.+... ..
T Consensus 223 ~~~~~~~lViDEah-~l~~~~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 301 (563)
T 3i5x_A 223 FFRFVDYKVLDEAD-RLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNE 301 (563)
T ss_dssp HCTTCCEEEEETHH-HHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSS
T ss_pred ccccceEEEEeCHH-HHhccchHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCCCceEEEeccCCCC
Confidence 46678999999999 555555554443332 22 234789999999996 34555555343333332111 00
Q ss_pred c-----eeEEeccccccccccccCCCCChHHHHHHHHHhhCC-CCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEE
Q psy3476 385 P-----IQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYP-RTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVL 458 (1417)
Q Consensus 385 p-----v~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~-~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~ 458 (1417)
+ +...+... .. ........+..+.+.+. ...++++||||++++.++.+++.|.+... .++.+.
T Consensus 302 ~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~--~~~~v~ 370 (563)
T 3i5x_A 302 PEAHERIDQSVVIS--------EK-FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK--KDLPIL 370 (563)
T ss_dssp CSSCTTEEEEEEEE--------SS-TTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT--TTSCEE
T ss_pred ccccccCceEEEEC--------ch-hHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc--CCceEE
Confidence 0 00000000 00 00111222222222211 14467999999999999999999987432 367899
Q ss_pred EecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCc
Q psy3476 459 PLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGR 538 (1417)
Q Consensus 459 ~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GR 538 (1417)
.+||+|++++|..+++.|++|+.+|||||+++++|||+|+|++||+ ||.|.+...| .||+||
T Consensus 371 ~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~VI~--------~~~p~s~~~y----------~Qr~GR 432 (563)
T 3i5x_A 371 EFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ--------IGVPSELANY----------IHRIGR 432 (563)
T ss_dssp EESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE--------ESCCSSTTHH----------HHHHTT
T ss_pred EecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCEEEE--------ECCCCchhhh----------hhhcCc
Confidence 9999999999999999999999999999999999999999999999 8887755555 499999
Q ss_pred CCCCC-CCeEEEecCHHHHHH
Q psy3476 539 AGRTG-PGVCYRLYSEEQYSL 558 (1417)
Q Consensus 539 AGR~g-~G~cy~L~t~~~~~~ 558 (1417)
|||.| +|.|+.++++.+...
T Consensus 433 agR~g~~g~~i~~~~~~e~~~ 453 (563)
T 3i5x_A 433 TARSGKEGSSVLFICKDELPF 453 (563)
T ss_dssp SSCTTCCEEEEEEEEGGGHHH
T ss_pred cccCCCCceEEEEEchhHHHH
Confidence 99999 899999998876543
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=325.54 Aligned_cols=212 Identities=18% Similarity=0.164 Sum_probs=151.1
Q ss_pred CCCccEEEEecCcccccCc-chHHHHH--HHHhccCCCCcEEEEccCCCH---HHHHHHhccCceEEEeCCcccceeEEe
Q psy3476 317 LSSYDVLVLDEIHERHLHG-DFLLGVI--KCLLHSTAEVKIILMSATINI---ELFHTYFNRIAKIIKVPGRLYPIQLEY 390 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~-d~ll~ll--k~l~~~r~~~qvIlmSATln~---~~~~~~f~~~~~vi~v~gr~~pv~v~~ 390 (1417)
+.++++|||||||..+-++ ||...+. ..+....++.++|+||||++. +.+.+++....+.+...+...| .+.|
T Consensus 163 ~~~i~~iViDEAH~is~~g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~~~~~~~~~~r~-nl~~ 241 (591)
T 2v1x_A 163 ARRFTRIAVDEVHCCSQWGHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEKCFTFTASFNRP-NLYY 241 (591)
T ss_dssp TTCEEEEEEETGGGGSTTCTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCSCEEEECCCCCT-TEEE
T ss_pred ccCCcEEEEECcccccccccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCCcEEEecCCCCc-ccEE
Confidence 5578899999999543322 2333222 234445678999999999975 3556677433333322221111 1222
Q ss_pred ccccccccccccCCCCChHHHHHHHHHhhCC-CCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHH
Q psy3476 391 HPIVELDRTKSEKLDPGPYIRILSIIDKKYP-RTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQ 469 (1417)
Q Consensus 391 ~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~-~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR 469 (1417)
...... ......+..+.+.+. ...++++||||+++++++.+++.|.. .++.+..+||+|++++|
T Consensus 242 ~v~~~~----------~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~-----~g~~~~~~h~~l~~~~R 306 (591)
T 2v1x_A 242 EVRQKP----------SNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQN-----LGIHAGAYHANLEPEDK 306 (591)
T ss_dssp EEEECC----------SSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHH-----TTCCEEEECTTSCHHHH
T ss_pred EEEeCC----------CcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHH-----CCCCEEEecCCCCHHHH
Confidence 111100 011122333333332 12467999999999999999999987 57889999999999999
Q ss_pred HHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEE
Q psy3476 470 DRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCY 548 (1417)
Q Consensus 470 ~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy 548 (1417)
..+++.|++|+.+|||||+++++|||+|+|++||+ ||.|.++ .+|.||+|||||.| +|.|+
T Consensus 307 ~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~--------~~~p~s~----------~~y~Qr~GRaGR~G~~g~~i 368 (591)
T 2v1x_A 307 TTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIH--------HSMSKSM----------ENYYQESGRAGRDDMKADCI 368 (591)
T ss_dssp HHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEE--------SSCCSSH----------HHHHHHHTTSCTTSSCEEEE
T ss_pred HHHHHHHHcCCCeEEEEechhhcCCCcccccEEEE--------eCCCCCH----------HHHHHHhccCCcCCCCceEE
Confidence 99999999999999999999999999999999999 8887754 45559999999999 89999
Q ss_pred EecCHHHHHHhhcc
Q psy3476 549 RLYSEEQYSLLAEY 562 (1417)
Q Consensus 549 ~L~t~~~~~~l~~~ 562 (1417)
.+|+..+...+..+
T Consensus 369 ~l~~~~D~~~~~~~ 382 (591)
T 2v1x_A 369 LYYGFGDIFRISSM 382 (591)
T ss_dssp EEECHHHHHHHHHH
T ss_pred EEEChHHHHHHHHH
Confidence 99999988765543
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-30 Score=332.94 Aligned_cols=151 Identities=15% Similarity=0.222 Sum_probs=89.9
Q ss_pred HHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEe--------cCCCCHHHHHHHhccCCC-CCce
Q psy3476 412 ILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPL--------HSTLSLEEQDRVFHYAPE-GLRK 482 (1417)
Q Consensus 412 il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~L--------Hs~Ls~~eR~~v~~~f~~-G~rk 482 (1417)
+...+.+.+....++++||||+++++++.+++.|..... ...+.+..+ ||+|++++|.++++.|++ |.++
T Consensus 385 L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~~-~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~ 463 (696)
T 2ykg_A 385 LCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNPK-LSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHN 463 (696)
T ss_dssp HHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCTT-CCSCCEEC-----------------------------CCS
T ss_pred HHHHHHHHhccCCCCcEEEEeCcHHHHHHHHHHHHhCCC-ccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCcc
Confidence 334444443334568999999999999999999987321 112667777 669999999999999998 9999
Q ss_pred EEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHH------
Q psy3476 483 CIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQY------ 556 (1417)
Q Consensus 483 VLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~------ 556 (1417)
|||||+++++|||+|++++||+ ||+|.+...|. ||+|| ||..+|.||.++++.+.
T Consensus 464 vLVaT~v~~~GiDip~v~~VI~--------~d~p~s~~~~~----------Qr~GR-GR~~~g~~~~l~~~~~~~~~~~~ 524 (696)
T 2ykg_A 464 ILIATSVADEGIDIAQCNLVIL--------YEYVGNVIKMI----------QTRGR-GRARGSKCFLLTSNAGVIEKEQI 524 (696)
T ss_dssp CSEEEESSCCC---CCCSEEEE--------ESCC--CCCC--------------------CCCEEEEEESCHHHHHHHHH
T ss_pred EEEEechhhcCCcCccCCEEEE--------eCCCCCHHHHH----------Hhhcc-CcCCCceEEEEecCCCHHHHHHH
Confidence 9999999999999999999999 99998877777 99999 99999999999998776
Q ss_pred ----HHhhccCCCcccccChHHHHHHHHhh
Q psy3476 557 ----SLLAEYSTPEIRRVSIDSLLLSLVCM 582 (1417)
Q Consensus 557 ----~~l~~~~~pEI~r~~L~~~lL~lk~l 582 (1417)
+.+.....+++.+.+.+.+..+++.+
T Consensus 525 ~~~~e~~~~~~~~~~~~~~~~~~~~~i~~~ 554 (696)
T 2ykg_A 525 NMYKEKMMNDSILRLQTWDEAVFREKILHI 554 (696)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHHHHH
Confidence 34455666777777777776666543
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-30 Score=326.90 Aligned_cols=213 Identities=17% Similarity=0.219 Sum_probs=146.8
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHh---cc----CCCCcEEEEccCCCH--HHHHHHhccCceEEEeCCc--cc
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLL---HS----TAEVKIILMSATINI--ELFHTYFNRIAKIIKVPGR--LY 384 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~---~~----r~~~qvIlmSATln~--~~~~~~f~~~~~vi~v~gr--~~ 384 (1417)
.+.++++||||||| +..+.+|...+...+. .. .++.++++||||++. ..+..++......+.+... ..
T Consensus 172 ~~~~~~~lViDEah-~l~~~gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~~~~~~~~~~~~~~ 250 (579)
T 3sqw_A 172 FFRFVDYKVLDEAD-RLLEIGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKECLFLDTVDKNE 250 (579)
T ss_dssp HCTTCCEEEEETHH-HHTSTTTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCSSEEEEEESSCSSS
T ss_pred ccccCCEEEEEChH-HhhcCCCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCCCceEEEeecCccc
Confidence 45678999999999 5555555554433322 22 247899999999963 4444444333333332211 00
Q ss_pred c-----eeEEeccccccccccccCCCCChHHHHHHHHHhhCC-CCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEE
Q psy3476 385 P-----IQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYP-RTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVL 458 (1417)
Q Consensus 385 p-----v~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~-~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~ 458 (1417)
+ +...+... .. ........+..+.+.+. ...++++||||++++.++.+++.|.+... .++.+.
T Consensus 251 ~~~~~~i~~~~~~~--------~~-~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~--~~~~v~ 319 (579)
T 3sqw_A 251 PEAHERIDQSVVIS--------EK-FANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK--KDLPIL 319 (579)
T ss_dssp CSSCTTEEEEEEEE--------SS-TTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT--TTSCEE
T ss_pred cccccccceEEEEe--------cc-hhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhc--CCCcEE
Confidence 0 11000000 00 00111222222222221 13467999999999999999999987432 367899
Q ss_pred EecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCc
Q psy3476 459 PLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGR 538 (1417)
Q Consensus 459 ~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GR 538 (1417)
.+||+|++++|..+++.|++|+.+|||||+++++|||+|+|++||+ ||.|.....|+ ||+||
T Consensus 320 ~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip~v~~VI~--------~~~p~s~~~y~----------Qr~GR 381 (579)
T 3sqw_A 320 EFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHEVLQ--------IGVPSELANYI----------HRIGR 381 (579)
T ss_dssp EESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCEEEE--------ESCCSSTTHHH----------HHHTT
T ss_pred EecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcccCCEEEE--------cCCCCCHHHhh----------hhccc
Confidence 9999999999999999999999999999999999999999999999 88877555554 99999
Q ss_pred CCCCC-CCeEEEecCHHHHHH
Q psy3476 539 AGRTG-PGVCYRLYSEEQYSL 558 (1417)
Q Consensus 539 AGR~g-~G~cy~L~t~~~~~~ 558 (1417)
|||.| +|.|+.++++.+...
T Consensus 382 agR~g~~g~~i~~~~~~e~~~ 402 (579)
T 3sqw_A 382 TARSGKEGSSVLFICKDELPF 402 (579)
T ss_dssp SSCTTCCEEEEEEEEGGGHHH
T ss_pred cccCCCCceEEEEEcccHHHH
Confidence 99999 799999998876553
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-29 Score=311.64 Aligned_cols=204 Identities=19% Similarity=0.252 Sum_probs=151.0
Q ss_pred CCccEEEEecCcccccCc-chHHHH--HHHHhccCCCCcEEEEccCCCHH---HHHHHhccCceEEEeCCcccceeEEec
Q psy3476 318 SSYDVLVLDEIHERHLHG-DFLLGV--IKCLLHSTAEVKIILMSATINIE---LFHTYFNRIAKIIKVPGRLYPIQLEYH 391 (1417)
Q Consensus 318 ~~~~~VIlDEaHER~l~~-d~ll~l--lk~l~~~r~~~qvIlmSATln~~---~~~~~f~~~~~vi~v~gr~~pv~v~~~ 391 (1417)
.++++|||||||..+-++ +|...+ +..+....++.++++||||++.. .+.++++-..+.+.+.+...| .+.|.
T Consensus 138 ~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~-~l~~~ 216 (523)
T 1oyw_A 138 WNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRP-NIRYM 216 (523)
T ss_dssp SCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCT-TEEEE
T ss_pred CCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCC-ceEEE
Confidence 578899999999554332 343333 22334445789999999999754 556666434444444332222 12221
Q ss_pred cccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHH
Q psy3476 392 PIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDR 471 (1417)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~ 471 (1417)
.... ......++..+.+ ..++++||||+++++++.+++.|.. .++.+..+||+|++++|..
T Consensus 217 v~~~----------~~~~~~l~~~l~~----~~~~~~IVf~~sr~~~e~l~~~L~~-----~g~~~~~~h~~l~~~~R~~ 277 (523)
T 1oyw_A 217 LMEK----------FKPLDQLMRYVQE----QRGKSGIIYCNSRAKVEDTAARLQS-----KGISAAAYHAGLENNVRAD 277 (523)
T ss_dssp EEEC----------SSHHHHHHHHHHH----TTTCCEEEECSSHHHHHHHHHHHHH-----TTCCEEEECTTSCHHHHHH
T ss_pred EEeC----------CCHHHHHHHHHHh----cCCCcEEEEeCCHHHHHHHHHHHHH-----CCCCEEEecCCCCHHHHHH
Confidence 1110 1223444555543 2467899999999999999999987 5788999999999999999
Q ss_pred HhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEe
Q psy3476 472 VFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRL 550 (1417)
Q Consensus 472 v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L 550 (1417)
+++.|++|+.+|||||+++++|||+|+|++||+ ||.|.+ .++|.||+|||||.| +|.|+.+
T Consensus 278 ~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~--------~~~p~s----------~~~y~Qr~GRaGR~g~~~~~~l~ 339 (523)
T 1oyw_A 278 VQEKFQRDDLQIVVATVAFGMGINKPNVRFVVH--------FDIPRN----------IESYYQETGRAGRDGLPAEAMLF 339 (523)
T ss_dssp HHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEE--------SSCCSS----------HHHHHHHHTTSCTTSSCEEEEEE
T ss_pred HHHHHHcCCCeEEEEechhhCCCCccCccEEEE--------ECCCCC----------HHHHHHHhccccCCCCCceEEEE
Confidence 999999999999999999999999999999999 887764 455669999999999 8999999
Q ss_pred cCHHHHHHh
Q psy3476 551 YSEEQYSLL 559 (1417)
Q Consensus 551 ~t~~~~~~l 559 (1417)
|+.++...+
T Consensus 340 ~~~~d~~~~ 348 (523)
T 1oyw_A 340 YDPADMAWL 348 (523)
T ss_dssp ECHHHHHHH
T ss_pred eCHHHHHHH
Confidence 999887643
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-29 Score=306.30 Aligned_cols=200 Identities=20% Similarity=0.182 Sum_probs=134.1
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEecccc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIV 394 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~ 394 (1417)
..+.++++||+||+|......++..+++..+.. +++.++++||||++.. ...+..... |+........
T Consensus 95 ~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~-~~~~~~l~~SAT~~~~-~~~~~~~~~----------~~~~~~~~~~ 162 (440)
T 1yks_A 95 TRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR-ANESATILMTATPPGT-SDEFPHSNG----------EIEDVQTDIP 162 (440)
T ss_dssp SCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTC-CCSSCCCSS----------CEEEEECCCC
T ss_pred ccccCccEEEEECccccCcchHHHHHHHHHHhc-cCCceEEEEeCCCCch-hhhhhhcCC----------CeeEeeeccC
Confidence 457889999999999542222233444444432 4679999999999532 111111111 1111111000
Q ss_pred ccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhc
Q psy3476 395 ELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFH 474 (1417)
Q Consensus 395 ~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~ 474 (1417)
... . ...+..+.+ .++++||||+++++++.+++.|++ .++.+..+|| ++|.++++
T Consensus 163 ~~~------~-----~~~~~~l~~-----~~~~~lVF~~s~~~a~~l~~~L~~-----~~~~v~~lhg----~~R~~~~~ 217 (440)
T 1yks_A 163 SEP------W-----NTGHDWILA-----DKRPTAWFLPSIRAANVMAASLRK-----AGKSVVVLNR----KTFEREYP 217 (440)
T ss_dssp SSC------C-----SSSCHHHHH-----CCSCEEEECSCHHHHHHHHHHHHH-----TTCCEEECCS----SSCC----
T ss_pred hHH------H-----HHHHHHHHh-----cCCCEEEEeCCHHHHHHHHHHHHH-----cCCCEEEecc----hhHHHHHh
Confidence 000 0 001222222 257999999999999999999987 4678999999 46899999
Q ss_pred cCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecc-cCCCccccceeecCHhhHHhhcCcCCCC-C-CCeEEEec
Q psy3476 475 YAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYD-VTAKMSTLQEFWISKASAEQRKGRAGRT-G-PGVCYRLY 551 (1417)
Q Consensus 475 ~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD-~~~~~~~l~~~~ISkasa~QR~GRAGR~-g-~G~cy~L~ 551 (1417)
.|++|+.+|||||+++|+|||+| +++||++|+.+.+.|+ ...++......|.|.++|.||+|||||. + +|.||.++
T Consensus 218 ~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~ 296 (440)
T 1yks_A 218 TIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYS 296 (440)
T ss_dssp ----CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred hhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEe
Confidence 99999999999999999999999 9999999998887763 3334555566789999999999999998 4 89999997
Q ss_pred C
Q psy3476 552 S 552 (1417)
Q Consensus 552 t 552 (1417)
+
T Consensus 297 ~ 297 (440)
T 1yks_A 297 E 297 (440)
T ss_dssp S
T ss_pred c
Confidence 3
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-29 Score=303.97 Aligned_cols=197 Identities=22% Similarity=0.228 Sum_probs=140.6
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEecccc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIV 394 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~ 394 (1417)
..+.++++|||||+|......+.....++.+. .+++.++++||||++.. +..+.....+++.+.. .+ +
T Consensus 89 ~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~-~~~~~~~l~~SAT~~~~-~~~~~~~~~~i~~~~~-------~~-~-- 156 (431)
T 2v6i_A 89 VRVPNYNLYIMDEAHFLDPASVAARGYIETRV-SMGDAGAIFMTATPPGT-TEAFPPSNSPIIDEET-------RI-P-- 156 (431)
T ss_dssp CCCCCCSEEEEESTTCCSHHHHHHHHHHHHHH-HTTSCEEEEEESSCTTC-CCSSCCCSSCCEEEEC-------CC-C--
T ss_pred ccccCCCEEEEeCCccCCccHHHHHHHHHHHh-hCCCCcEEEEeCCCCcc-hhhhcCCCCceeeccc-------cC-C--
Confidence 34678999999999954333333444444443 35689999999999632 1111111122221111 00 0
Q ss_pred ccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhc
Q psy3476 395 ELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFH 474 (1417)
Q Consensus 395 ~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~ 474 (1417)
.. .. ..++..+.+ .++++||||+++++++.+++.|++ .++.+..+||+ +|+++++
T Consensus 157 ~~------~~-----~~~~~~l~~-----~~~~~lVF~~~~~~~~~l~~~L~~-----~~~~v~~lhg~----~r~~~~~ 211 (431)
T 2v6i_A 157 DK------AW-----NSGYEWITE-----FDGRTVWFVHSIKQGAEIGTCLQK-----AGKKVLYLNRK----TFESEYP 211 (431)
T ss_dssp SS------CC-----SSCCHHHHS-----CSSCEEEECSSHHHHHHHHHHHHH-----TTCCEEEESTT----THHHHTT
T ss_pred HH------HH-----HHHHHHHHc-----CCCCEEEEeCCHHHHHHHHHHHHH-----cCCeEEEeCCc----cHHHHHH
Confidence 00 00 011222322 267899999999999999999987 36789999997 5888999
Q ss_pred cCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC--CCeEEEe
Q psy3476 475 YAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG--PGVCYRL 550 (1417)
Q Consensus 475 ~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g--~G~cy~L 550 (1417)
.|++|+.+|||||+++|+|||+| +.+||++|..+...|| ..++......|.|.++|.||+||+||.| +|.++.+
T Consensus 212 ~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d-~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 212 KCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILL-DGRVSMQGPIAITPASAAQRRGRIGRNPEKLGDIYAY 287 (431)
T ss_dssp HHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEE-TTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCCEEEE
T ss_pred hhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceec-ccceeecccccCCHHHHHHhhhccCCCCCCCCeEEEE
Confidence 99999999999999999999999 9999999999998888 4556666778999999999999999998 3444443
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.2e-29 Score=306.65 Aligned_cols=116 Identities=18% Similarity=0.290 Sum_probs=79.8
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhh-------ccCCcEEEEecCCCCHHHHHHHhccCCC-CCceEEEecchhhccC
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNE-------KSQGWIVLPLHSTLSLEEQDRVFHYAPE-GLRKCIVSTNIAETSI 494 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~-------~~~~~~V~~LHs~Ls~~eR~~v~~~f~~-G~rkVLVATnIae~GI 494 (1417)
...+++||||++++.++.+++.|..... ...+.....+||+|++++|.++++.|++ |..+|||||+++++||
T Consensus 387 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~Gl 466 (555)
T 3tbk_A 387 KPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGI 466 (555)
T ss_dssp CTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCE
T ss_pred CCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCC
Confidence 4568999999999999999999987421 1123445566789999999999999999 9999999999999999
Q ss_pred CcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHH
Q psy3476 495 TIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS 557 (1417)
Q Consensus 495 dIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~ 557 (1417)
|+|++++||+ ||+|.+...|. ||+|| ||..+|.||.|+++.+..
T Consensus 467 Dlp~v~~VI~--------~d~p~s~~~~~----------Qr~GR-gR~~~g~~~~l~~~~~~~ 510 (555)
T 3tbk_A 467 DIAECNLVIL--------YEYVGNVIKMI----------QTRGR-GRARDSKCFLLTSSADVI 510 (555)
T ss_dssp ETTSCSEEEE--------ESCCSSCCCEE----------CSSCC-CTTTSCEEEEEESCHHHH
T ss_pred ccccCCEEEE--------eCCCCCHHHHH----------HhcCc-CcCCCceEEEEEcCCCHH
Confidence 9999999999 99999888888 99999 999899999999887654
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.2e-30 Score=307.71 Aligned_cols=192 Identities=15% Similarity=0.152 Sum_probs=128.7
Q ss_pred CCCCccEEEEecCc---------ccccC-cchHHH-HHHHHhccC-----------CCCcEEEEccCC-CH----HHHHH
Q psy3476 316 FLSSYDVLVLDEIH---------ERHLH-GDFLLG-VIKCLLHST-----------AEVKIILMSATI-NI----ELFHT 368 (1417)
Q Consensus 316 ~L~~~~~VIlDEaH---------ER~l~-~d~ll~-llk~l~~~r-----------~~~qvIlmSATl-n~----~~~~~ 368 (1417)
.+.++++||+|||| +++++ .+|... +...+...+ ++.++++||||+ +. ..+..
T Consensus 136 ~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~ 215 (414)
T 3oiy_A 136 SQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRD 215 (414)
T ss_dssp TTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHH
T ss_pred ccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHH
Confidence 35578999999999 34444 444444 222222222 788999999995 31 23333
Q ss_pred HhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhh
Q psy3476 369 YFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEY 448 (1417)
Q Consensus 369 ~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~ 448 (1417)
++.-.. .........+...+... .....+...+.+. ++++||||+++++++.+++.|..
T Consensus 216 ~~~~~~--~~~~~~~~~i~~~~~~~-------------~~~~~l~~~l~~~-----~~~~lVF~~~~~~~~~l~~~L~~- 274 (414)
T 3oiy_A 216 LLNFTV--GRLVSVARNITHVRISS-------------RSKEKLVELLEIF-----RDGILIFAQTEEEGKELYEYLKR- 274 (414)
T ss_dssp HHSCCS--SCCCCCCCSEEEEEESS-------------CCHHHHHHHHHHH-----CSSEEEEESSHHHHHHHHHHHHH-
T ss_pred hhccCc--Cccccccccchheeecc-------------CHHHHHHHHHHHc-----CCCEEEEECCHHHHHHHHHHHHH-
Confidence 332000 00000011111112111 1233444444441 47899999999999999999987
Q ss_pred hhccCCcEEE-EecCCCCHHHHHHHhccCCCCCceEEEe----cchhhccCCcCC-eEEEEcCCcccceecccCCCcccc
Q psy3476 449 NEKSQGWIVL-PLHSTLSLEEQDRVFHYAPEGLRKCIVS----TNIAETSITIDG-IRFVVDSGKVKEMSYDVTAKMSTL 522 (1417)
Q Consensus 449 ~~~~~~~~V~-~LHs~Ls~~eR~~v~~~f~~G~rkVLVA----TnIae~GIdIP~-V~~VIdsG~~k~~~yD~~~~~~~l 522 (1417)
.++.+. .+||. +|. ++.|++|+.+|||| |+++++|||+|+ |++||+ ||.|.+
T Consensus 275 ----~~~~~~~~~h~~----~r~--~~~f~~g~~~vLvat~s~T~~~~~GiDip~~v~~VI~--------~~~p~~---- 332 (414)
T 3oiy_A 275 ----FKFNVGETWSEF----EKN--FEDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIF--------WGTPSG---- 332 (414)
T ss_dssp ----TTCCEEESSSCH----HHH--HHHHHTTSCSEEEEECCTTCCCCCCCCCTTTCCEEEE--------ESCCTT----
T ss_pred ----cCCceehhhcCc----chH--HHHHhCCCCeEEEEecCcCchhhccCccccccCEEEE--------ECCCCC----
Confidence 567887 89985 344 99999999999999 999999999999 999999 887731
Q ss_pred ceeecCHhhHHhhcCcCCCCC-----CCeEEEecCHH
Q psy3476 523 QEFWISKASAEQRKGRAGRTG-----PGVCYRLYSEE 554 (1417)
Q Consensus 523 ~~~~ISkasa~QR~GRAGR~g-----~G~cy~L~t~~ 554 (1417)
.|..+|.||+|||||.| +|.|+.++.+.
T Consensus 333 ----~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~~~~ 365 (414)
T 3oiy_A 333 ----PDVYTYIQASGRSSRILNGVLVKGVSVIFEEDE 365 (414)
T ss_dssp ----TCHHHHHHHHGGGCCEETTEECCEEEEEECCCH
T ss_pred ----CCHHHHHHHhCccccCCCCCCcceEEEEEEccH
Confidence 24556669999999986 69999999543
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.9e-29 Score=308.41 Aligned_cols=116 Identities=19% Similarity=0.259 Sum_probs=56.4
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhh-------ccCCcEEEEecCCCCHHHHHHHhccCCC-CCceEEEecchhhccC
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNE-------KSQGWIVLPLHSTLSLEEQDRVFHYAPE-GLRKCIVSTNIAETSI 494 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~-------~~~~~~V~~LHs~Ls~~eR~~v~~~f~~-G~rkVLVATnIae~GI 494 (1417)
..++++||||++++.++.+++.|.+... ...+.....+||+|++++|..+++.|++ |..+|||||+++++||
T Consensus 388 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~Gi 467 (556)
T 4a2p_A 388 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 467 (556)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC------
T ss_pred CCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCC
Confidence 4468999999999999999999976311 0124455667899999999999999999 9999999999999999
Q ss_pred CcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHH
Q psy3476 495 TIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS 557 (1417)
Q Consensus 495 dIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~ 557 (1417)
|+|++++||+ ||+|.+.. +|.||+|| ||..+|.||.|+++.+.+
T Consensus 468 Dip~v~~VI~--------~d~p~s~~----------~~~Qr~GR-gR~~~g~~~~l~~~~~~~ 511 (556)
T 4a2p_A 468 DIVQCNLVVL--------YEYSGNVT----------KMIQVRGR-GRAAGSKCILVTSKTEVV 511 (556)
T ss_dssp -----CEEEE--------ETCCSCHH----------HHHHC---------CCEEEEESCHHHH
T ss_pred CchhCCEEEE--------eCCCCCHH----------HHHHhcCC-CCCCCceEEEEEeCcchH
Confidence 9999999999 99886554 45599999 999999999999887664
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-28 Score=297.21 Aligned_cols=112 Identities=22% Similarity=0.333 Sum_probs=98.3
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecC--------CCCHHHHHHHhccCCCCCceEEEecchhhccC
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHS--------TLSLEEQDRVFHYAPEGLRKCIVSTNIAETSI 494 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs--------~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GI 494 (1417)
..++++||||++++.++.+++.|.. .++.+..+|| +++.++|..+++.|++|..+|||||+++++||
T Consensus 359 ~~~~k~lVF~~~~~~~~~l~~~L~~-----~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gl 433 (494)
T 1wp9_A 359 KQNSKIIVFTNYRETAKKIVNELVK-----DGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGL 433 (494)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHH-----TTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGG
T ss_pred CCCCeEEEEEccHHHHHHHHHHHHH-----cCCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCccccCC
Confidence 3578999999999999999999987 4788999999 99999999999999999999999999999999
Q ss_pred CcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHH
Q psy3476 495 TIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS 557 (1417)
Q Consensus 495 dIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~ 557 (1417)
|+|++++||. ||++. +.+++.||+|||||.|+|.+|+|+++...+
T Consensus 434 dl~~~~~Vi~--------~d~~~----------~~~~~~Qr~GR~~R~g~g~~~~l~~~~t~e 478 (494)
T 1wp9_A 434 DVPEVDLVVF--------YEPVP----------SAIRSIQRRGRTGRHMPGRVIILMAKGTRD 478 (494)
T ss_dssp GSTTCCEEEE--------SSCCH----------HHHHHHHHHTTSCSCCCSEEEEEEETTSHH
T ss_pred CchhCCEEEE--------eCCCC----------CHHHHHHHHhhccCCCCceEEEEEecCCHH
Confidence 9999999998 77764 455666999999999999999999876554
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=311.32 Aligned_cols=200 Identities=21% Similarity=0.233 Sum_probs=143.8
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEecccc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIV 394 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~ 394 (1417)
..+.++++|||||+|+.....+.....++.+.. +.+.++++||||++.. +..+.....++..+.. ...
T Consensus 328 ~~l~~l~lvViDEaH~~~~~~~~~~~~l~~~~~-~~~~~vl~~SAT~~~~-i~~~~~~~~~i~~v~~----------~~~ 395 (673)
T 2wv9_A 328 LRVPNYNLFVMDEAHFTDPASIAARGYIATRVE-AGEAAAIFMTATPPGT-SDPFPDTNSPVHDVSS----------EIP 395 (673)
T ss_dssp SCCCCCSEEEEESTTCCCHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTC-CCSSCCCSSCEEEEEC----------CCC
T ss_pred cccccceEEEEeCCcccCccHHHHHHHHHHhcc-ccCCcEEEEcCCCChh-hhhhcccCCceEEEee----------ecC
Confidence 357789999999999653333444455554432 3678999999999632 1111111222221111 000
Q ss_pred ccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhc
Q psy3476 395 ELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFH 474 (1417)
Q Consensus 395 ~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~ 474 (1417)
.. .. ...+..+. ..++++||||+++++++.+++.|++ .++.+..+||. +|.++++
T Consensus 396 ~~------~~-----~~~l~~l~-----~~~~~~lVF~~s~~~~e~la~~L~~-----~g~~v~~lHg~----eR~~v~~ 450 (673)
T 2wv9_A 396 DR------AW-----SSGFEWIT-----DYAGKTVWFVASVKMSNEIAQCLQR-----AGKRVIQLNRK----SYDTEYP 450 (673)
T ss_dssp SS------CC-----SSCCHHHH-----SCCSCEEEECSSHHHHHHHHHHHHT-----TTCCEEEECSS----SHHHHGG
T ss_pred HH------HH-----HHHHHHHH-----hCCCCEEEEECCHHHHHHHHHHHHh-----CCCeEEEeChH----HHHHHHH
Confidence 00 00 01122222 2368999999999999999999987 46889999994 7999999
Q ss_pred cCCCCCceEEEecchhhccCCcCCeEEEEcCCcccce--ecccCCCccccceeecCHhhHHhhcCcCCCC-C-CCeEEEe
Q psy3476 475 YAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEM--SYDVTAKMSTLQEFWISKASAEQRKGRAGRT-G-PGVCYRL 550 (1417)
Q Consensus 475 ~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~--~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~-g-~G~cy~L 550 (1417)
.|++|+.+|||||+++|+||||| +++|||+|+.... .||...++..+...|.|.++|.||+|||||. + +|.||.+
T Consensus 451 ~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l 529 (673)
T 2wv9_A 451 KCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHY 529 (673)
T ss_dssp GGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEE
T ss_pred HHHCCCceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEE
Confidence 99999999999999999999999 9999999876653 3566555555567899999999999999999 4 8999999
Q ss_pred cC
Q psy3476 551 YS 552 (1417)
Q Consensus 551 ~t 552 (1417)
+.
T Consensus 530 ~~ 531 (673)
T 2wv9_A 530 GG 531 (673)
T ss_dssp CS
T ss_pred Ee
Confidence 73
|
| >3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=6e-29 Score=282.10 Aligned_cols=182 Identities=23% Similarity=0.378 Sum_probs=160.2
Q ss_pred CcCCCC-CCCCCcchhHHHHHHHHhcCCCCCCCCcChhhhhccCCCCChhhHHHHHhhhccCChhhHHHHhhhccCCCcc
Q psy3476 587 VRKFPF-LEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVLSVQSPF 665 (1417)
Q Consensus 587 ~~~f~~-l~pP~~~~l~~Al~~L~~lGaId~~~~lT~LG~~ls~lpldp~lak~Ll~~~~f~cle~vl~IaA~Lsv~~~F 665 (1417)
...|+| ++||+.+++..|++.|..+||||.+++||++|+.|++||++|++||||+.|..++|++++++|+|+||++++|
T Consensus 5 ~~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls~~~~f 84 (270)
T 3i4u_A 5 GPEFELGTRGSPMETLITAMEQLYTLGALDDEGLLTRLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVF 84 (270)
T ss_dssp ---------CCHHHHHHHHHHHHHHHTSBCTTSCBCHHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCCB
T ss_pred hhccccCCCCcCHHHHHHHHHHHHHcCCcCCCCCccHHHHHHHhCCCCHHHHHHHHHhhhcCCHHHHHHHHHHHCCCccc
Confidence 356788 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChhHHHHHhhcccCCCChHHHHHHHHHHHHhhhhhchHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCCCCcC
Q psy3476 666 TNRAFRDPDCETARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSGLITD 745 (1417)
Q Consensus 666 ~~~~~~~~~~~~~r~~f~~~~sD~ltlln~f~~w~~~~~~~~~~~~WC~~~~L~~~~L~ei~~lr~QL~~iL~~~gl~~~ 745 (1417)
..|..++++++++|+.|....|||+|++|+|++|.+.+ ..++||++|+|++++|+++.++|+||.++|++.|+...
T Consensus 85 ~~p~~~~~~a~~~~~~f~~~~sD~ltlLn~~~~~~~~~----~~~~wC~~~fL~~~~l~~~~~ir~QL~~~l~~~~~~~~ 160 (270)
T 3i4u_A 85 YRPKDKQALADQKKAKFHQTEGDHLTLLAVYNSWKNNK----FSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVV 160 (270)
T ss_dssp CCCGGGHHHHHHHHHTTCBTTBHHHHHHHHHHHHHHTT----TCHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred cCCchhHHHHHHHHHHccCCCChHHHHHHHHHHHHHcC----chhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHcCCCcC
Confidence 99988888888999999999999999999999998642 35689999999999999999999999999999998655
Q ss_pred CCCCCCChhHHHHHHhcCchHHHHHHHhh
Q psy3476 746 IPGPDASLSSRERALRHGEIKLLQAIKRK 774 (1417)
Q Consensus 746 ~~~~~~~~~s~~ral~~G~~~~L~~l~~~ 774 (1417)
+++. +.+.+.+++.+|++.+++....+
T Consensus 161 s~~~--~~~~i~~~L~aG~~~nvA~~~~~ 187 (270)
T 3i4u_A 161 SCGK--STVRVQKAICSGFFRNAAKKDPQ 187 (270)
T ss_dssp CCTT--CTHHHHHHHHHHHGGGEEEECSS
T ss_pred CCcc--hHHHHHHHHHHHhHHHHheeCCC
Confidence 5433 46789999999999998865443
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.4e-29 Score=319.26 Aligned_cols=108 Identities=18% Similarity=0.221 Sum_probs=85.8
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhh-ccCCcEEEEecCC--------CCHHHHHHHhccCCCCCceEEEecchhhccCC
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNE-KSQGWIVLPLHST--------LSLEEQDRVFHYAPEGLRKCIVSTNIAETSIT 495 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~-~~~~~~V~~LHs~--------Ls~~eR~~v~~~f~~G~rkVLVATnIae~GId 495 (1417)
++++||||++++.++.+++.|..... ...++.+..+||+ |++++|.++++.|++|..+|||||+++++|||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GID 479 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLD 479 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTSC
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCCc
Confidence 68999999999999999999986311 1126889999999 99999999999999999999999999999999
Q ss_pred cCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEec
Q psy3476 496 IDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLY 551 (1417)
Q Consensus 496 IP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~ 551 (1417)
+|++++||+ ||.|.+. .++.||+|||||.| +.++.++
T Consensus 480 ip~v~~VI~--------~d~p~s~----------~~~~Qr~GRArr~g-~~~~l~~ 516 (699)
T 4gl2_A 480 IKECNIVIR--------YGLVTNE----------IAMVQARGRARADE-STYVLVA 516 (699)
T ss_dssp CCSCCCCEE--------ESCCCCH----------HHHHHHHTTSCSSS-CEEEEEE
T ss_pred cccCCEEEE--------eCCCCCH----------HHHHHHcCCCCCCC-ceEEEEE
Confidence 999999999 9987654 45559999998876 4444333
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-27 Score=306.75 Aligned_cols=116 Identities=19% Similarity=0.259 Sum_probs=62.2
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhh-------ccCCcEEEEecCCCCHHHHHHHhccCCC-CCceEEEecchhhccC
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNE-------KSQGWIVLPLHSTLSLEEQDRVFHYAPE-GLRKCIVSTNIAETSI 494 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~-------~~~~~~V~~LHs~Ls~~eR~~v~~~f~~-G~rkVLVATnIae~GI 494 (1417)
..++++||||++++.++.+++.|.+... ...+.....+||+|++++|..+++.|++ |..+|||||+++++||
T Consensus 629 ~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GI 708 (797)
T 4a2q_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 708 (797)
T ss_dssp CSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-----
T ss_pred CCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCC
Confidence 4568999999999999999999976210 1124456677999999999999999999 9999999999999999
Q ss_pred CcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHH
Q psy3476 495 TIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS 557 (1417)
Q Consensus 495 dIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~ 557 (1417)
|+|++++||+ ||++.+.. ++.||+|| ||..+|.||.|+++.+..
T Consensus 709 Dlp~v~~VI~--------yd~p~s~~----------~~iQr~GR-GR~~~g~~i~l~~~~~~e 752 (797)
T 4a2q_A 709 DIVQCNLVVL--------YEYSGNVT----------KMIQVRGR-GRAAGSKCILVTSKTEVV 752 (797)
T ss_dssp --CCCSEEEE--------ESCCSCHH----------HHHTC--------CCCEEEEECCHHHH
T ss_pred CchhCCEEEE--------eCCCCCHH----------HHHHhcCC-CCCCCceEEEEEeCCcHH
Confidence 9999999999 99876544 45599999 999999999999887654
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=306.07 Aligned_cols=198 Identities=21% Similarity=0.249 Sum_probs=131.9
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEEe---CCcccceeEEec
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKV---PGRLYPIQLEYH 391 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v---~gr~~pv~v~~~ 391 (1417)
..+.++++||+||+|...... ...+.....+.++++||||+..+.+...+.+...+..+ +....|+...+.
T Consensus 486 ~~~~~l~lVVIDEaHr~g~~q------r~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~r~~i~~~~~ 559 (780)
T 1gm5_A 486 VHFKNLGLVIIDEQHRFGVKQ------REALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTMLV 559 (780)
T ss_dssp CCCSCCCEEEEESCCCC-----------CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSSCCCCEECCC
T ss_pred hhccCCceEEecccchhhHHH------HHHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCCCcceEEEEe
Confidence 457789999999999422111 11122233578999999999666555333232222222 111223333222
Q ss_pred cccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHH--------HHHHHHHHHhhhhccCCcEEEEecCC
Q psy3476 392 PIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISE--------ISSIVRAAQEYNEKSQGWIVLPLHST 463 (1417)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~e--------ie~la~~L~~~~~~~~~~~V~~LHs~ 463 (1417)
+ ......++..+.+.+ ..+++++|||++.++ ++.+++.|.+. ..+++.+..+||+
T Consensus 560 ~-------------~~~~~~l~~~i~~~l--~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~--~~~~~~v~~lHG~ 622 (780)
T 1gm5_A 560 P-------------MDRVNEVYEFVRQEV--MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKE--VFPEFKLGLMHGR 622 (780)
T ss_dssp C-------------SSTHHHHHHHHHHHT--TTSCCBCCBCCCC--------CHHHHHHHSGGGS--CC---CBCCCCSS
T ss_pred c-------------cchHHHHHHHHHHHH--hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhh--hcCCCcEEEEeCC
Confidence 1 112334555565554 346789999997765 34444444330 1245789999999
Q ss_pred CCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC
Q psy3476 464 LSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG 543 (1417)
Q Consensus 464 Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g 543 (1417)
|++++|..+++.|++|+.+|||||+++++|||+|++++||+ ||++.. +.+++.||+||+||.|
T Consensus 623 m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi--------~d~~r~---------~l~~l~Qr~GRaGR~g 685 (780)
T 1gm5_A 623 LSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVI--------ENPERF---------GLAQLHQLRGRVGRGG 685 (780)
T ss_dssp SCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEB--------CSCSSS---------CTTHHHHHHHTSCCSS
T ss_pred CCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEE--------eCCCCC---------CHHHHHHHhcccCcCC
Confidence 99999999999999999999999999999999999999998 777641 3456679999999998
Q ss_pred -CCeEEEecC
Q psy3476 544 -PGVCYRLYS 552 (1417)
Q Consensus 544 -~G~cy~L~t 552 (1417)
+|.||.+++
T Consensus 686 ~~g~~ill~~ 695 (780)
T 1gm5_A 686 QEAYCFLVVG 695 (780)
T ss_dssp TTCEEECCCC
T ss_pred CCCEEEEEEC
Confidence 899999997
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-26 Score=302.29 Aligned_cols=127 Identities=20% Similarity=0.304 Sum_probs=69.3
Q ss_pred HHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhh-------ccCCcEEEEecCCCCHHHHHHHhccCCC-CCceE
Q psy3476 412 ILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNE-------KSQGWIVLPLHSTLSLEEQDRVFHYAPE-GLRKC 483 (1417)
Q Consensus 412 il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~-------~~~~~~V~~LHs~Ls~~eR~~v~~~f~~-G~rkV 483 (1417)
+.+.+.+.+....++++||||++++.++.+++.|.+... ...+.....+||+|++.+|..+++.|++ |..+|
T Consensus 618 L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~V 697 (936)
T 4a2w_A 618 LVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRL 697 (936)
T ss_dssp HHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSE
T ss_pred HHHHHHHHhccCCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeE
Confidence 334444444445578999999999999999999987310 0124456677999999999999999999 99999
Q ss_pred EEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHH
Q psy3476 484 IVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS 557 (1417)
Q Consensus 484 LVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~ 557 (1417)
||||+++++|||+|++++||+ ||++.+...|+ ||+|| ||..+|.||.|+++.+.+
T Consensus 698 LVaT~~~~eGIDlp~v~~VI~--------yD~p~s~~~~i----------Qr~GR-GR~~~g~vi~Li~~~t~e 752 (936)
T 4a2w_A 698 LIATSVADEGIDIVQCNLVVL--------YEYSGNVTKMI----------QVRGR-GRAAGSKCILVTSKTEVV 752 (936)
T ss_dssp EEEECC------CCCCSEEEE--------ESCCSCSHHHH----------CC--------CCCEEEEESCHHHH
T ss_pred EEEeCchhcCCcchhCCEEEE--------eCCCCCHHHHH----------HhcCC-CCCCCCEEEEEEeCCCHH
Confidence 999999999999999999999 99887655555 99999 999999999999887664
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-26 Score=306.09 Aligned_cols=262 Identities=13% Similarity=0.095 Sum_probs=176.4
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc--CCCcEEEecchHHHHHHHHHHHHHHHccccCCeEEE
Q psy3476 37 SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA--GFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGY 114 (1417)
Q Consensus 37 ~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~--~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy 114 (1417)
....+.+|.++++.+.++++++++||||||||+.....++.. ...+++++.|+|.+|.|+++++.. ++ ..|-.|+.
T Consensus 76 gf~pt~iQ~~ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~-l~-~~~i~v~~ 153 (1104)
T 4ddu_A 76 GKDLTGYQRLWAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQK-LA-DEKVKIFG 153 (1104)
T ss_dssp SSCCCHHHHHHHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHT-TS-CTTSCEEE
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHH-hh-CCCCeEEE
Confidence 345678999999999999999999999999999655444442 346899999999999999998876 44 44555655
Q ss_pred EEeeccc---------c-cCCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhhhhhHHh
Q psy3476 115 QIRFEKH---------R-REKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAEEAPKRR 184 (1417)
Q Consensus 115 ~ir~e~~---------~-~~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (1417)
..+..+. . ....+|+++|+|.|++.+..
T Consensus 154 l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~------------------------------------------ 191 (1104)
T 4ddu_A 154 FYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK------------------------------------------ 191 (1104)
T ss_dssp ECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH------------------------------------------
T ss_pred EeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh------------------------------------------
Confidence 4433221 0 11255666666665543210
Q ss_pred hhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeeccCCCCc
Q psy3476 185 KMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGVISPPLH 264 (1417)
Q Consensus 185 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~~s~~~~ 264 (1417)
T Consensus 192 -------------------------------------------------------------------------------- 191 (1104)
T 4ddu_A 192 -------------------------------------------------------------------------------- 191 (1104)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcc---------cccC-
Q psy3476 265 CGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHE---------RHLH- 334 (1417)
Q Consensus 265 ~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHE---------R~l~- 334 (1417)
..+.++++|||||||. |+++
T Consensus 192 --------------------------------------------------l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~ 221 (1104)
T 4ddu_A 192 --------------------------------------------------LSQKRFDFVFVDDVDAVLKASRNIDTLLMM 221 (1104)
T ss_dssp --------------------------------------------------HHTSCCSEEEESCHHHHTTSSHHHHHHHHT
T ss_pred --------------------------------------------------hcccCcCEEEEeCCCccccccccchhhhHh
Confidence 2245788999999982 3333
Q ss_pred cchHHH-HHHHHhccC-----------CCCcEEEEccCC-CH----HHHHHHhccCceEEEeCCc---ccceeEEecccc
Q psy3476 335 GDFLLG-VIKCLLHST-----------AEVKIILMSATI-NI----ELFHTYFNRIAKIIKVPGR---LYPIQLEYHPIV 394 (1417)
Q Consensus 335 ~d~ll~-llk~l~~~r-----------~~~qvIlmSATl-n~----~~~~~~f~~~~~vi~v~gr---~~pv~v~~~~~~ 394 (1417)
.+|... +...+...+ .+.|+++||||+ +. ..+..++. +.+... ...+...+...
T Consensus 222 ~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~-----i~v~~~~~~~~~i~~~~~~~- 295 (1104)
T 4ddu_A 222 VGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-----FTVGRLVSVARNITHVRISS- 295 (1104)
T ss_dssp SSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC-----CCCCBCCCCCCCEEEEEESC-
T ss_pred cCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee-----EEeccCCCCcCCceeEEEec-
Confidence 344444 333333223 688999999995 31 23333331 111111 11111112111
Q ss_pred ccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEE-EecCCCCHHHHHHHh
Q psy3476 395 ELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVL-PLHSTLSLEEQDRVF 473 (1417)
Q Consensus 395 ~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~-~LHs~Ls~~eR~~v~ 473 (1417)
.....+...+.+. ++++||||++++.++.+++.|.. .++.+. .+|| +|++ +
T Consensus 296 ------------~k~~~L~~ll~~~-----~~~~LVF~~s~~~a~~l~~~L~~-----~g~~~~~~lhg-----~rr~-l 347 (1104)
T 4ddu_A 296 ------------RSKEKLVELLEIF-----RDGILIFAQTEEEGKELYEYLKR-----FKFNVGETWSE-----FEKN-F 347 (1104)
T ss_dssp ------------CCHHHHHHHHHHH-----CSSEEEEESSSHHHHHHHHHHHH-----TTCCEEESSSS-----HHHH-H
T ss_pred ------------CHHHHHHHHHHhc-----CCCEEEEECcHHHHHHHHHHHHh-----CCCCeeeEecC-----cHHH-H
Confidence 1233444555442 48999999999999999999987 567888 9999 2555 9
Q ss_pred ccCCCCCceEEEe----cchhhccCCcCC-eEEEEcCC
Q psy3476 474 HYAPEGLRKCIVS----TNIAETSITIDG-IRFVVDSG 506 (1417)
Q Consensus 474 ~~f~~G~rkVLVA----TnIae~GIdIP~-V~~VIdsG 506 (1417)
+.|++|+.+|||| |+++++|||||+ |++||+.|
T Consensus 348 ~~F~~G~~~VLVatas~TdvlarGIDip~~V~~VI~~d 385 (1104)
T 4ddu_A 348 EDFKVGKINILIGVQAYYGKLTRGVDLPERIKYVIFWG 385 (1104)
T ss_dssp HHHHHTSCSEEEEETTTHHHHCCSCCCTTTCCEEEEES
T ss_pred HHHHCCCCCEEEEecCCCCeeEecCcCCCCCCEEEEEC
Confidence 9999999999999 999999999999 99999933
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-25 Score=298.69 Aligned_cols=198 Identities=17% Similarity=0.168 Sum_probs=140.3
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEEeC---CcccceeEEec
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVP---GRLYPIQLEYH 391 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~---gr~~pv~v~~~ 391 (1417)
..+.++++|||||+|. +.. .....+...+.+.++++||||+....+...+........+. ....++...+.
T Consensus 721 ~~~~~l~lvIiDEaH~--~g~----~~~~~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~ 794 (1151)
T 2eyq_A 721 VKFKDLGLLIVDEEHR--FGV----RHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVR 794 (1151)
T ss_dssp CCCSSEEEEEEESGGG--SCH----HHHHHHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEE
T ss_pred ccccccceEEEechHh--cCh----HHHHHHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEe
Confidence 3467899999999993 221 22333444456789999999996665555443222221111 11223332222
Q ss_pred cccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHH
Q psy3476 392 PIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDR 471 (1417)
Q Consensus 392 ~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~ 471 (1417)
+.. ...+...+.+.+ ..+++++|||+++++++.+++.|++.. ++..+..+||+|++.+|.+
T Consensus 795 ~~~--------------~~~i~~~il~~l--~~g~qvlvf~~~v~~~~~l~~~L~~~~---p~~~v~~lhg~~~~~eR~~ 855 (1151)
T 2eyq_A 795 EYD--------------SMVVREAILREI--LRGGQVYYLYNDVENIQKAAERLAELV---PEARIAIGHGQMRERELER 855 (1151)
T ss_dssp ECC--------------HHHHHHHHHHHH--TTTCEEEEECCCSSCHHHHHHHHHHHC---TTSCEEECCSSCCHHHHHH
T ss_pred cCC--------------HHHHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhC---CCCeEEEEeCCCCHHHHHH
Confidence 110 112233333333 246899999999999999999998743 4678999999999999999
Q ss_pred HhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEe
Q psy3476 472 VFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRL 550 (1417)
Q Consensus 472 v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L 550 (1417)
+++.|++|+.+|||||+++++|||+|++++||. ++... .+.+++.||+||+||.| +|.||.+
T Consensus 856 il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi--------~~~~~---------~~l~~l~Qr~GRvgR~g~~g~~~ll 918 (1151)
T 2eyq_A 856 VMNDFHHQRFNVLVCTTIIETGIDIPTANTIII--------ERADH---------FGLAQLHQLRGRVGRSHHQAYAWLL 918 (1151)
T ss_dssp HHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEE--------TTTTS---------SCHHHHHHHHTTCCBTTBCEEEEEE
T ss_pred HHHHHHcCCCcEEEECCcceeeecccCCcEEEE--------eCCCC---------CCHHHHHHHHhccCcCCCceEEEEE
Confidence 999999999999999999999999999999996 54422 13456779999999999 8999999
Q ss_pred cCHH
Q psy3476 551 YSEE 554 (1417)
Q Consensus 551 ~t~~ 554 (1417)
+++.
T Consensus 919 ~~~~ 922 (1151)
T 2eyq_A 919 TPHP 922 (1151)
T ss_dssp ECCG
T ss_pred ECCc
Confidence 8653
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-25 Score=275.01 Aligned_cols=205 Identities=13% Similarity=0.072 Sum_probs=128.4
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCH-----HHHHHHhccCceEEEeCCc-------c
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINI-----ELFHTYFNRIAKIIKVPGR-------L 383 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~-----~~~~~~f~~~~~vi~v~gr-------~ 383 (1417)
.+.++++||+||+| +... ..+.+.+....+..++++||||++. -.+..+++ ..++.++.. .
T Consensus 222 ~~~~~~liIiDE~H-~~~~----~~~~~il~~~~~~~~~l~lSATp~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l 294 (510)
T 2oca_A 222 WFSQFGMMMNDECH-LATG----KSISSIISGLNNCMFKFGLSGSLRDGKANIMQYVGMFG--EIFKPVTTSKLMEDGQV 294 (510)
T ss_dssp GGGGEEEEEEETGG-GCCH----HHHHHHGGGCTTCCEEEEEESCGGGCSSCHHHHHHHHC--SEECCCCCC--------
T ss_pred hhhcCCEEEEECCc-CCCc----ccHHHHHHhcccCcEEEEEEeCCCCCcccHHHhHHhhC--CeEEeeCHHHHhhCCcC
Confidence 34568999999999 3332 2233334455677899999999932 22344552 222222211 1
Q ss_pred cceeEEeccccc----------ccccc---ccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhh
Q psy3476 384 YPIQLEYHPIVE----------LDRTK---SEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNE 450 (1417)
Q Consensus 384 ~pv~v~~~~~~~----------~~~~~---~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~ 450 (1417)
.|..+....... ..+.. ...........+...+.+... ..+..++||++ .++++.+++.|.+
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~ivf~~-~~~~~~l~~~L~~--- 369 (510)
T 2oca_A 295 TELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSKRNKWIAKLAIKLAQ-KDENAFVMFKH-VSHGKAIFDLIKN--- 369 (510)
T ss_dssp -CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHHHHHHHHHHHHHHHT-TTCEEEEEESS-HHHHHHHHHHHHT---
T ss_pred CCceEEEEeecCChHHhccccccchHHHHHHHhccHHHHHHHHHHHHHHHh-cCCCeEEEEec-HHHHHHHHHHHHH---
Confidence 111111110000 00000 000000011223334444332 23445666666 8889989998876
Q ss_pred ccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEec-chhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCH
Q psy3476 451 KSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST-NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISK 529 (1417)
Q Consensus 451 ~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVAT-nIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISk 529 (1417)
.+..+..+||+++.++|.++++.|++|+.+||||| +++++|+|+|++++||. |+++.+.
T Consensus 370 --~~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~T~~~~~~GiDip~v~~vi~--------~~~~~s~---------- 429 (510)
T 2oca_A 370 --EYDKVYYVSGEVDTETRNIMKTLAENGKGIIIVASYGVFSTGISVKNLHHVVL--------AHGVKSK---------- 429 (510)
T ss_dssp --TCSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEEEHHHHHHSCCCCSEEEEEE--------SSCCCSC----------
T ss_pred --cCCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEEEcChhhcccccccCcEEEE--------eCCCCCH----------
Confidence 33479999999999999999999999999999999 99999999999999998 7777554
Q ss_pred hhHHhhcCcCCCCCCCe-EEEecC
Q psy3476 530 ASAEQRKGRAGRTGPGV-CYRLYS 552 (1417)
Q Consensus 530 asa~QR~GRAGR~g~G~-cy~L~t 552 (1417)
+++.||+||+||.|+|. ++.+|+
T Consensus 430 ~~~~Q~~GR~gR~g~~~~~v~i~~ 453 (510)
T 2oca_A 430 IIVLQTIGRVLRKHGSKTIATVWD 453 (510)
T ss_dssp CHHHHHHHHHHTTTCCCCCCEEEE
T ss_pred HHHHHHHhcccccCCCCceEEEEE
Confidence 45559999999999543 555554
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7.2e-26 Score=277.09 Aligned_cols=104 Identities=21% Similarity=0.264 Sum_probs=89.6
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEE
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFV 502 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~V 502 (1417)
..++++||||++.+.++.+++.|. +..+||+++..+|.++++.|++|..+|||||+++++|+|+|++++|
T Consensus 347 ~~~~k~lvF~~~~~~~~~l~~~l~----------~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~V 416 (472)
T 2fwr_A 347 HRKDKIIIFTRHNELVYRISKVFL----------IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVG 416 (472)
T ss_dssp TSSSCBCCBCSCHHHHHHHHHHTT----------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEE
T ss_pred CCCCcEEEEECCHHHHHHHHHHhC----------cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEE
Confidence 346899999999999999988762 4568999999999999999999999999999999999999999999
Q ss_pred EcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCC----eEEEecCHH
Q psy3476 503 VDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG----VCYRLYSEE 554 (1417)
Q Consensus 503 IdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G----~cy~L~t~~ 554 (1417)
|+ ||++.+. .++.||+|||||.|+| .+|.++++.
T Consensus 417 i~--------~~~~~s~----------~~~~Q~~GR~~R~g~~k~~~~i~~lv~~~ 454 (472)
T 2fwr_A 417 VI--------MSGSGSA----------REYIQRLGRILRPSKGKKEAVLYELISRG 454 (472)
T ss_dssp EE--------ECCSSCC----------HHHHHHHHHSBCCCTTTCCEEEEEEEECS
T ss_pred EE--------ECCCCCH----------HHHHHHHhhccCCCCCCceEEEEEEEeCC
Confidence 98 8876544 4555999999999976 466676543
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=99.91 E-value=9e-24 Score=267.10 Aligned_cols=106 Identities=23% Similarity=0.248 Sum_probs=93.9
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcC-------
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITID------- 497 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP------- 497 (1417)
+.++||||+|++.++.+++.|.. .++.+..|||++.+.++..+.++++.| .|+||||+|+||+||+
T Consensus 432 ~~pvLVft~s~~~se~Ls~~L~~-----~gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V~~ 504 (844)
T 1tf5_A 432 GQPVLVGTVAVETSELISKLLKN-----KGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGVKE 504 (844)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHT-----TTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTSGG
T ss_pred CCcEEEEECCHHHHHHHHHHHHH-----CCCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchhhh
Confidence 56899999999999999999987 678899999999999998888888776 6999999999999999
Q ss_pred -CeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHH
Q psy3476 498 -GIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQ 555 (1417)
Q Consensus 498 -~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~ 555 (1417)
++.+||+ ||.|.+...|. ||+||+||.| +|.++.+++.++
T Consensus 505 ~ggl~VIn--------~d~p~s~r~y~----------hr~GRTGRqG~~G~s~~~vs~eD 546 (844)
T 1tf5_A 505 LGGLAVVG--------TERHESRRIDN----------QLRGRSGRQGDPGITQFYLSMED 546 (844)
T ss_dssp GTSEEEEE--------SSCCSSHHHHH----------HHHTTSSGGGCCEEEEEEEETTS
T ss_pred cCCcEEEE--------ecCCCCHHHHH----------hhcCccccCCCCCeEEEEecHHH
Confidence 8999999 88877555555 9999999999 899998887654
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-25 Score=295.68 Aligned_cols=73 Identities=14% Similarity=0.120 Sum_probs=60.0
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEe----cchhhccCCcCCe-
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVS----TNIAETSITIDGI- 499 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVA----TnIae~GIdIP~V- 499 (1417)
++++||||+++++++.+++.|.. . +.+..+||++ ..+++.|++|+.+|||| ||++++|||+|+|
T Consensus 275 ~~~~LVF~~t~~~a~~l~~~L~~-----~-~~v~~lhg~~-----~~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI 343 (1054)
T 1gku_B 275 GTGGIIYARTGEEAEEIYESLKN-----K-FRIGIVTATK-----KGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERI 343 (1054)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTT-----S-SCEEECTTSS-----SHHHHHHHHTSCSEEEEECC------CCSCCTTTC
T ss_pred CCCEEEEEcCHHHHHHHHHHHhh-----c-cCeeEEeccH-----HHHHHHHHcCCCcEEEEecCCCCeeEeccccCCcc
Confidence 57899999999999999998876 3 7899999998 47788899999999999 9999999999995
Q ss_pred EEEEcCCcc
Q psy3476 500 RFVVDSGKV 508 (1417)
Q Consensus 500 ~~VIdsG~~ 508 (1417)
++||+.|..
T Consensus 344 ~~VI~~~~P 352 (1054)
T 1gku_B 344 RFAVFVGCP 352 (1054)
T ss_dssp CEEEEESCC
T ss_pred cEEEEeCCC
Confidence 999995544
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=7e-24 Score=236.38 Aligned_cols=178 Identities=39% Similarity=0.661 Sum_probs=156.2
Q ss_pred chHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC-------CCcEEEecchHHHHHHHHHH
Q psy3476 27 TLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG-------FQRIACTQPRRIACISLSKR 99 (1417)
Q Consensus 27 ~~~~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~-------~~~i~~tqPrr~aa~~~a~r 99 (1417)
.+.++.+.|..+|++.+|+++++.+.++++++|+|||||||||++++++++.. ..++++++|+|.++.+++++
T Consensus 49 ~~~~~~~~~~~~p~~~~q~~~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~ 128 (235)
T 3llm_A 49 DLQAILQERELLPVKKFESEILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAER 128 (235)
T ss_dssp HHHHHHHHHHTSGGGGGHHHHHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHH
Confidence 34567788899999999999999999999999999999999999998887642 23799999999999999999
Q ss_pred HHHHHccccCCeEEEEEeeccccc-CCccEEEEccchhHHhhcCCCCCCCCCCCcchhhHHhhhhhhHHHHHHHHhhhhh
Q psy3476 100 VAYETLSQYSNLVGYQIRFEKHRR-EKTKIVFITEGLLLRQDSGLITDIPGPDASLSSRERALRHGEIKLLQAIKRKKAE 178 (1417)
Q Consensus 100 va~e~~~~~g~~vGy~ir~e~~~~-~~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (1417)
++.+++..+|..+||.++++.... ..++|+|+|+|+|++.+..
T Consensus 129 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~------------------------------------ 172 (235)
T 3llm_A 129 VAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA------------------------------------ 172 (235)
T ss_dssp HHHTTTCCTTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH------------------------------------
T ss_pred HHHHhccccCceEEEeechhhccCCCCCeEEEECHHHHHHHHHh------------------------------------
Confidence 999999999999999999888765 6789999999999986421
Q ss_pred hhhHHhhhhccccchhhhhHHHHhhhhhhhccchhhhhhhhcCCcccccccccccccccchhhhhhhhhccccccceeec
Q psy3476 179 EAPKRRKMLKADNAYEIEEEEEEEEGERLESMDANEVEFRLKHDPKQVQVATDNFLSSYDILILDEVHERHLYGDFLLGV 258 (1417)
Q Consensus 179 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~de~h~r~~~~d~l~~~ 258 (1417)
T Consensus 173 -------------------------------------------------------------------------------- 172 (235)
T 3llm_A 173 -------------------------------------------------------------------------------- 172 (235)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCcCCCccccccccccccchhhhhhhhhcccccccchhhhhhccccccccccccCCCCccEEEEecCcccccCcchH
Q psy3476 259 ISPPLHCGGEIVAADYFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFL 338 (1417)
Q Consensus 259 ~s~~~~~~~~~~~~~~~l~~~~~~~~~~~~~r~~~~d~~lgt~~~L~~~~~~~~~d~~L~~~~~VIlDEaHER~l~~d~l 338 (1417)
.++++++||+||+|+|+++.++.
T Consensus 173 ---------------------------------------------------------~l~~~~~lVlDEah~~~~~~~~~ 195 (235)
T 3llm_A 173 ---------------------------------------------------------GIRGISHVIVDEIHERDINTDFL 195 (235)
T ss_dssp ---------------------------------------------------------CCTTCCEEEECCTTSCCHHHHHH
T ss_pred ---------------------------------------------------------hhcCCcEEEEECCccCCcchHHH
Confidence 25578999999999888999999
Q ss_pred HHHHHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEE
Q psy3476 339 LGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIK 378 (1417)
Q Consensus 339 l~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~ 378 (1417)
...++.+....++.|+++||||++.+.+++|| .+++++.
T Consensus 196 ~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~-~~~pvi~ 234 (235)
T 3llm_A 196 LVVLRDVVQAYPEVRIVLMSATIDTSMFCEYF-FNCPIIE 234 (235)
T ss_dssp HHHHHHHHHHCTTSEEEEEECSSCCHHHHHHT-TSCCCEE
T ss_pred HHHHHHHHhhCCCCeEEEEecCCCHHHHHHHc-CCCCEEe
Confidence 88888888888899999999999888899999 5666664
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.6e-22 Score=250.88 Aligned_cols=168 Identities=18% Similarity=0.189 Sum_probs=124.3
Q ss_pred CcEEEEccCC--CHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcEE
Q psy3476 352 VKIILMSATI--NIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429 (1417)
Q Consensus 352 ~qvIlmSATl--n~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iL 429 (1417)
.++.+||+|. ..+.|.+.+ +..++.+|.. .|+.-...+...... ....+..++..+.... ..+.++|
T Consensus 377 ~kl~GmTGTa~te~~ef~~iY--~l~vv~IPtn-~p~~R~d~~d~v~~~------~~~K~~al~~~i~~~~--~~gqpvL 445 (853)
T 2fsf_A 377 EKLAGMTGTADTEAFEFSSIY--KLDTVVVPTN-RPMIRKDLPDLVYMT------EAEKIQAIIEDIKERT--AKGQPVL 445 (853)
T ss_dssp SEEEEEECTTCCCHHHHHHHH--CCEEEECCCS-SCCCCEECCCEEESS------HHHHHHHHHHHHHHHH--TTTCCEE
T ss_pred hhhhcCCCCchhHHHHHHHHh--CCcEEEcCCC-CCceeecCCcEEEeC------HHHHHHHHHHHHHHHh--cCCCCEE
Confidence 4889999999 577888888 4667777742 232211111000000 0012334444444332 2356899
Q ss_pred EEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCC-----------
Q psy3476 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDG----------- 498 (1417)
Q Consensus 430 VFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~----------- 498 (1417)
|||+|++.++.+++.|.+ .++.+..|||+....++..+.++++.| .|+||||+|+||+||+.
T Consensus 446 Vft~sie~se~Ls~~L~~-----~gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~gn~~~~~~~~ 518 (853)
T 2fsf_A 446 VGTISIEKSELVSNELTK-----AGIKHNVLNAKFHANEAAIVAQAGYPA--AVTIATNMAGRGTDIVLGGSWQAEVAAL 518 (853)
T ss_dssp EEESSHHHHHHHHHHHHH-----TTCCCEECCTTCHHHHHHHHHTTTSTT--CEEEEESCCSSCSCCCTTCCHHHHHHHC
T ss_pred EEECcHHHHHHHHHHHHH-----CCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecccccCCcCccCCCchHhhhhhc
Confidence 999999999999999988 678899999999999999999999998 69999999999999997
Q ss_pred ---------------------e-----EEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEec
Q psy3476 499 ---------------------I-----RFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLY 551 (1417)
Q Consensus 499 ---------------------V-----~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~ 551 (1417)
| .+||+ |+.|.+ ...+.||+||+||.| ||.+..++
T Consensus 519 ~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~--------te~pes----------~riy~qr~GRTGRqGd~G~s~~fl 580 (853)
T 2fsf_A 519 ENPTAEQIEKIKADWQVRHDAVLEAGGLHIIG--------TERHES----------RRIDNQLRGRSGRQGDAGSSRFYL 580 (853)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEE--------SSCCSS----------HHHHHHHHTTSSGGGCCEEEEEEE
T ss_pred ccchhHHHHHHHHHhhhhhhHHHhcCCcEEEE--------ccCCCC----------HHHHHhhccccccCCCCeeEEEEe
Confidence 4 79999 777664 445559999999999 89998888
Q ss_pred CHHH
Q psy3476 552 SEEQ 555 (1417)
Q Consensus 552 t~~~ 555 (1417)
+.++
T Consensus 581 s~eD 584 (853)
T 2fsf_A 581 SMED 584 (853)
T ss_dssp ETTS
T ss_pred cccH
Confidence 7654
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.88 E-value=7.2e-23 Score=257.81 Aligned_cols=102 Identities=15% Similarity=0.093 Sum_probs=83.6
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhc---cCCcEEEEecCCCCHHHHHHHhccCCCCCce---EEEecchhhccCCcC
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEK---SQGWIVLPLHSTLSLEEQDRVFHYAPEGLRK---CIVSTNIAETSITID 497 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~---~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rk---VLVATnIae~GIdIP 497 (1417)
..+++||||++++.++.+++.|.+.... ...-.+..+||.++ ++|..+++.|++|..+ |+|||+++++|||+|
T Consensus 438 ~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~-~~r~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip 516 (590)
T 3h1t_A 438 RFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEG-KIGKGHLSRFQELETSTPVILTTSQLLTTGVDAP 516 (590)
T ss_dssp TTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTH-HHHHHHHHHHHCTTCCCCCEEEESSTTTTTCCCT
T ss_pred CCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCCh-HHHHHHHHHHhCCCCCCCEEEEECChhhcCccch
Confidence 4579999999999999999999875321 12234778899976 4799999999998765 889999999999999
Q ss_pred CeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCC
Q psy3476 498 GIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGP 544 (1417)
Q Consensus 498 ~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~ 544 (1417)
++++||. |+++.+ ...+.||+||+||.++
T Consensus 517 ~v~~Vi~--------~~~~~s----------~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 517 TCKNVVL--------ARVVNS----------MSEFKQIVGRGTRLRE 545 (590)
T ss_dssp TEEEEEE--------ESCCCC----------HHHHHHHHTTSCCCBG
T ss_pred heeEEEE--------EecCCC----------hHHHHHHHhhhcccCc
Confidence 9999998 777654 4556699999999874
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.9e-22 Score=249.99 Aligned_cols=119 Identities=20% Similarity=0.235 Sum_probs=97.3
Q ss_pred HHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecch
Q psy3476 410 IRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489 (1417)
Q Consensus 410 ~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnI 489 (1417)
..++..+.+.. ..+.++||||+|++.++.+++.|.+ .++.+..|||+....++..+.++++.| .|+||||+
T Consensus 447 ~al~~~i~~~~--~~gqpvLVft~Sie~sE~Ls~~L~~-----~Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnm 517 (922)
T 1nkt_A 447 IAVVDDVAERY--AKGQPVLIGTTSVERSEYLSRQFTK-----RRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNM 517 (922)
T ss_dssp HHHHHHHHHHH--HTTCCEEEEESCHHHHHHHHHHHHH-----TTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETT
T ss_pred HHHHHHHHHHH--hcCCcEEEEECCHHHHHHHHHHHHH-----CCCCEEEecCChhHHHHHHHHhcCCCC--eEEEecch
Confidence 34444444332 2345899999999999999999988 678899999999888888888999988 69999999
Q ss_pred hhccCCcCCe----------------------------------------------------EEEEcCCcccceecccCC
Q psy3476 490 AETSITIDGI----------------------------------------------------RFVVDSGKVKEMSYDVTA 517 (1417)
Q Consensus 490 ae~GIdIP~V----------------------------------------------------~~VIdsG~~k~~~yD~~~ 517 (1417)
|+||+||+.+ .+||+ |+.|.
T Consensus 518 AgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~--------te~pe 589 (922)
T 1nkt_A 518 AGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLG--------TERHE 589 (922)
T ss_dssp CSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEE--------CSCCS
T ss_pred hhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEe--------ccCCC
Confidence 9999999975 69999 77766
Q ss_pred CccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHH
Q psy3476 518 KMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQ 555 (1417)
Q Consensus 518 ~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~ 555 (1417)
+ +..+.||+||+||.| ||.+..+++.++
T Consensus 590 s----------~riy~qr~GRTGRqGdpG~s~fflSleD 618 (922)
T 1nkt_A 590 S----------RRIDNQLRGRSGRQGDPGESRFYLSLGD 618 (922)
T ss_dssp S----------HHHHHHHHHTSSGGGCCEEEEEEEETTS
T ss_pred C----------HHHHHHHhcccccCCCCeeEEEEechhH
Confidence 4 445559999999999 899988877543
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-22 Score=223.13 Aligned_cols=162 Identities=22% Similarity=0.333 Sum_probs=136.1
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVV 503 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VI 503 (1417)
.++++||||+++++++.+++.|.. .++.+..+||+|++++|..+++.|++|.++|||||+++++|+|+|++++||
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~-----~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidi~~v~~Vi 104 (212)
T 3eaq_A 30 SPDRAMVFTRTKAETEEIAQGLLR-----LGHPAQALHGDLSQGERERVLGAFRQGEVRVLVATDVAARGLDIPQVDLVV 104 (212)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHH-----HTCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECTTTTCSSSCCCBSEEE
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHH-----cCCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecChhhcCCCCccCcEEE
Confidence 468999999999999999999987 468899999999999999999999999999999999999999999999999
Q ss_pred cCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHHh--------------hccCCCccc
Q psy3476 504 DSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLL--------------AEYSTPEIR 568 (1417)
Q Consensus 504 dsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~l--------------~~~~~pEI~ 568 (1417)
+ ||.|. |.++|.||+|||||.| +|.|+.++++.+...+ .....+++.
T Consensus 105 ~--------~~~p~----------~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ei~ 166 (212)
T 3eaq_A 105 H--------YRLPD----------RAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVL 166 (212)
T ss_dssp E--------SSCCS----------SHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCCHHHHH
T ss_pred E--------CCCCc----------CHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCCHHHHH
Confidence 9 77765 5666779999999999 8999999998764322 223445677
Q ss_pred ccChHHHHHHHHhhCCCCCcCC-----CCCCCCCcchhHHHHHHH
Q psy3476 569 RVSIDSLLLSLVCMGLGDVRKF-----PFLEAPPAENIESSVRSL 608 (1417)
Q Consensus 569 r~~L~~~lL~lk~lgi~~~~~f-----~~l~pP~~~~l~~Al~~L 608 (1417)
+..+..+++.++.++..+...| .++++|+.+.+..|+..|
T Consensus 167 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~al~~l 211 (212)
T 3eaq_A 167 EAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALL 211 (212)
T ss_dssp HHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 7788888888888776555555 567888888888888765
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.4e-22 Score=228.48 Aligned_cols=166 Identities=21% Similarity=0.321 Sum_probs=138.1
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEc
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVD 504 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VId 504 (1417)
++++||||+++++++.+++.|.. .++.+.++||+|++.+|..+++.|++|.++||||||++++|||||++++||+
T Consensus 28 ~~~~LVF~~t~~~~~~l~~~L~~-----~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~ 102 (300)
T 3i32_A 28 PDRAMVFTRTKAETEEIAQGLLR-----LGHPAQALHGDMSQGERERVMGAFRQGEVRVLVATDVAARGLDIPQVDLVVH 102 (300)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHT-----TTCCEEEECSCCCTHHHHHHHHHHHHTSCCEEEECSTTTCSTTCCCCSEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHh-----CCCCEEEEeCCCCHHHHHHHHHHhhcCCceEEEEechhhcCccccceeEEEE
Confidence 78999999999999999999977 5788999999999999999999999999999999999999999999999999
Q ss_pred CCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHH--------------hhccCCCcccc
Q psy3476 505 SGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSL--------------LAEYSTPEIRR 569 (1417)
Q Consensus 505 sG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~--------------l~~~~~pEI~r 569 (1417)
||.|.+ .++|.||+|||||.| +|.||.++++.+... +.....+||.+
T Consensus 103 --------~d~p~s----------~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~~~ei~~ 164 (300)
T 3i32_A 103 --------YRMPDR----------AEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLE 164 (300)
T ss_dssp --------SSCCSS----------TTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCCHHHHHH
T ss_pred --------cCCCCC----------HHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCCCHHHHHH
Confidence 777664 445559999999998 899999998776432 22235567888
Q ss_pred cChHHHHHHHHhhCCCCCcCC-----CCCCCCCcchhHHHHHHHHhcCC
Q psy3476 570 VSIDSLLLSLVCMGLGDVRKF-----PFLEAPPAENIESSVRSLTQHGA 613 (1417)
Q Consensus 570 ~~L~~~lL~lk~lgi~~~~~f-----~~l~pP~~~~l~~Al~~L~~lGa 613 (1417)
..+..+++.++.++..+...| .++++|+.+.+..|+..|.....
T Consensus 165 ~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~~~e~laaal~~l~~~~~ 213 (300)
T 3i32_A 165 AKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAALLALLLGGAP 213 (300)
T ss_dssp HHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCcHHHHHHHHHHHhcCCc
Confidence 889999999987765555555 46778999999999999966654
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.9e-19 Score=220.05 Aligned_cols=169 Identities=21% Similarity=0.265 Sum_probs=121.3
Q ss_pred CCcEEEEccCC--CHHHHHHHhccCceEEEeCCcccceeEEeccccccccccccCCCCChHHHHHHHHHhhCCCCCCCcE
Q psy3476 351 EVKIILMSATI--NIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDV 428 (1417)
Q Consensus 351 ~~qvIlmSATl--n~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~i 428 (1417)
-.|+.+||+|+ ..+.|.+.+ +..++.+|...-............. ....+..++..+.+.. ..+.++
T Consensus 409 Y~kL~GMTGTa~te~~Ef~~iY--~l~vv~IPtnkp~~R~d~~d~vy~t-------~~eK~~al~~~I~~~~--~~gqpV 477 (822)
T 3jux_A 409 YEKLAGMTGTAKTEESEFVQVY--GMEVVVIPTHKPMIRKDHDDLVFRT-------QKEKYEKIVEEIEKRY--KKGQPV 477 (822)
T ss_dssp SSEEEEEESSCGGGHHHHHHHS--CCCEEECCCSSCCCCEECCCEEESS-------HHHHHHHHHHHHHHHH--HHTCCE
T ss_pred hhHHeEECCCCchHHHHHHHHh--CCeEEEECCCCCcceeecCcEEEec-------HHHHHHHHHHHHHHHh--hCCCCE
Confidence 35799999999 466787777 4667777643211111110000000 0012334455554432 235689
Q ss_pred EEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcC--------CeE
Q psy3476 429 LIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITID--------GIR 500 (1417)
Q Consensus 429 LVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP--------~V~ 500 (1417)
||||+|++.++.+++.|.+ .++.+..+||+....++..+.++++.| .|+||||+|+||+||+ +..
T Consensus 478 LVFt~S~e~sE~Ls~~L~~-----~Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~Ggl 550 (822)
T 3jux_A 478 LVGTTSIEKSELLSSMLKK-----KGIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGL 550 (822)
T ss_dssp EEEESSHHHHHHHHHHHHT-----TTCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSC
T ss_pred EEEECCHHHHHHHHHHHHH-----CCCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCC
Confidence 9999999999999999987 678899999997777777777777777 5999999999999998 777
Q ss_pred EEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHH
Q psy3476 501 FVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQ 555 (1417)
Q Consensus 501 ~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~ 555 (1417)
+||+ |+.|.....|. ||+||+||.| ||.++.+++.++
T Consensus 551 hVIn--------te~Pes~r~y~----------qriGRTGRqG~~G~a~~fvsleD 588 (822)
T 3jux_A 551 CIIG--------TERHESRRIDN----------QLRGRAGRQGDPGESIFFLSLED 588 (822)
T ss_dssp EEEE--------SSCCSSHHHHH----------HHHTTSSCSSCCCEEEEEEETTS
T ss_pred EEEe--------cCCCCCHHHHH----------HhhCccccCCCCeeEEEEechhH
Confidence 9999 88776555544 9999999999 899988887654
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.7e-19 Score=236.59 Aligned_cols=110 Identities=20% Similarity=0.249 Sum_probs=94.7
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCC--ceEEEecchhhccCCcCCeE
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGL--RKCIVSTNIAETSITIDGIR 500 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~--rkVLVATnIae~GIdIP~V~ 500 (1417)
..++++||||++++.++.+++.|... .++.+..+||+|++.+|..+++.|++|+ .+|||||+++++|+|+|+++
T Consensus 501 ~~~~k~iVF~~~~~~~~~l~~~L~~~----~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~ 576 (968)
T 3dmq_A 501 HRSQKVLVICAKAATALQLEQVLRER----EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFAS 576 (968)
T ss_dssp TSSSCCCEECSSTHHHHHHHHHHHTT----TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCC
T ss_pred CCCCCEEEEeCcHHHHHHHHHHHHHH----cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCc
Confidence 45789999999999999999999741 3688999999999999999999999998 99999999999999999999
Q ss_pred EEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CC--eEEEecCHH
Q psy3476 501 FVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PG--VCYRLYSEE 554 (1417)
Q Consensus 501 ~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G--~cy~L~t~~ 554 (1417)
+||+ ||++.+.. .+.||+||+||.| .| .+|.++.+.
T Consensus 577 ~VI~--------~d~p~~~~----------~~~Q~~GR~~R~Gq~~~v~v~~~~~~~ 615 (968)
T 3dmq_A 577 HMVM--------FDLPFNPD----------LLEQRIGRLDRIGQAHDIQIHVPYLEK 615 (968)
T ss_dssp EEEC--------SSCCSSHH----------HHHHHHHTTSCSSSCSCCEEEEEEETT
T ss_pred EEEE--------ecCCCCHH----------HHHHHhhccccCCCCceEEEEEecCCC
Confidence 9999 88876544 4559999999998 45 455555443
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-18 Score=218.45 Aligned_cols=126 Identities=18% Similarity=0.223 Sum_probs=105.2
Q ss_pred HHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchh
Q psy3476 411 RILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIA 490 (1417)
Q Consensus 411 ~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIa 490 (1417)
.++..+.+.. ..++++||||+|+..++.+++.|.+ .++.+..+||++++.+|..+++.|++|+.+|+|||+++
T Consensus 427 ~Ll~~l~~~~--~~~~~vlVf~~t~~~ae~L~~~L~~-----~gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l 499 (664)
T 1c4o_A 427 DLMEGIRERA--ARGERTLVTVLTVRMAEELTSFLVE-----HGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLL 499 (664)
T ss_dssp HHHHHHHHHH--HTTCEEEEECSSHHHHHHHHHHHHH-----TTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCC
T ss_pred HHHHHHHHHH--hcCCEEEEEECCHHHHHHHHHHHHh-----cCCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChh
Confidence 3444444332 2357999999999999999999987 56788999999999999999999999999999999999
Q ss_pred hccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHH
Q psy3476 491 ETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQY 556 (1417)
Q Consensus 491 e~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~ 556 (1417)
++|+|+|++++||+ ||.... ..|.|..+|.||+|||||.++|.|+.++++.+.
T Consensus 500 ~~GlDip~v~lVI~--------~d~d~~-----G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~~ 552 (664)
T 1c4o_A 500 REGLDIPEVSLVAI--------LDADKE-----GFLRSERSLIQTIGRAARNARGEVWLYADRVSE 552 (664)
T ss_dssp CTTCCCTTEEEEEE--------TTTTSC-----SGGGSHHHHHHHHGGGTTSTTCEEEEECSSCCH
T ss_pred hcCccCCCCCEEEE--------eCCccc-----CCCCCHHHHHHHHCccCcCCCCEEEEEEcCCCH
Confidence 99999999999999 654221 124577788899999999999999999976443
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=214.74 Aligned_cols=111 Identities=19% Similarity=0.129 Sum_probs=91.7
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCC-Cce-EEEecchhhccCCcCCeEE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEG-LRK-CIVSTNIAETSITIDGIRF 501 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G-~rk-VLVATnIae~GIdIP~V~~ 501 (1417)
.+.++|||+...+.++.+++.|... .++.+..+||+++.++|.++++.|++| ..+ +|+||+++++|+|+|++++
T Consensus 340 ~~~k~lvF~~~~~~~~~l~~~l~~~----~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~ 415 (500)
T 1z63_A 340 EGDKIAIFTQFVDMGKIIRNIIEKE----LNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSANR 415 (500)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHH----HTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCSE
T ss_pred cCCcEEEEEehHHHHHHHHHHHHHh----hCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCCE
Confidence 4678999999999999999998762 156688899999999999999999988 444 7999999999999999999
Q ss_pred EEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHHHH
Q psy3476 502 VVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEEQY 556 (1417)
Q Consensus 502 VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~~~ 556 (1417)
||. ||++.+...+. ||+||++|.| +..+|+++++...
T Consensus 416 vi~--------~d~~~~~~~~~----------Q~~gR~~R~Gq~~~v~v~~lv~~~ti 455 (500)
T 1z63_A 416 VIH--------FDRWWNPAVED----------QATDRVYRIGQTRNVIVHKLISVGTL 455 (500)
T ss_dssp EEE--------SSCCSCC---C----------HHHHTTTTTTTTSCEEEEEEEETTSH
T ss_pred EEE--------eCCCCCcchHH----------HHHHHHHHcCCCCeeEEEEEEeCCCH
Confidence 999 99887777766 9999999998 3456888876533
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.75 E-value=2.2e-18 Score=226.93 Aligned_cols=209 Identities=12% Similarity=0.122 Sum_probs=128.3
Q ss_pred CCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCH-------HHHHHHhccCceEEEe-------CCcc
Q psy3476 318 SSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINI-------ELFHTYFNRIAKIIKV-------PGRL 383 (1417)
Q Consensus 318 ~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~-------~~~~~~f~~~~~vi~v-------~gr~ 383 (1417)
..+.+||+|||| |+..+++.. .+....++.++++||||+.. .....+|+. ++... .|-.
T Consensus 400 ~~~~lvIiDEAH-rs~~~~~~~----~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~--~i~~Y~l~~AI~dg~l 472 (1038)
T 2w00_A 400 NQQVVFIFDECH-RSQFGEAQK----NLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGR--ELHSYVITDAIRDEKV 472 (1038)
T ss_dssp GSCEEEEEESCC-TTHHHHHHH----HHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCS--EEEEECHHHHHHHTSS
T ss_pred ccccEEEEEccc-hhcchHHHH----HHHHhCCcccEEEEeCCccccccchhhhHHHHHhCC--eeEeecHHHHHhCCCc
Confidence 356899999999 766544333 33333456899999999932 245677742 22221 2344
Q ss_pred cceeEEecccccc--------c---c--cccc-C-CCCChHHHHHHHHHhhCC----C----CCCCcEEEEeCCHHHHHH
Q psy3476 384 YPIQLEYHPIVEL--------D---R--TKSE-K-LDPGPYIRILSIIDKKYP----R----TERGDVLIFMSGISEISS 440 (1417)
Q Consensus 384 ~pv~v~~~~~~~~--------~---~--~~~~-~-~~~~~~~~il~~l~~~~~----~----~~~g~iLVFl~~~~eie~ 440 (1417)
.|+.+.|...... + . .... . ..+.....++..+.+.+. . ..++++||||+++..+..
T Consensus 473 ~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~ 552 (1038)
T 2w00_A 473 LKFKVDYNDVRPQFKSLETETDEKKLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKA 552 (1038)
T ss_dssp CCEEEEECCCCGGGHHHHTCCCHHHHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHH
T ss_pred CCeEEEEEeccchhhhccccccHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHH
Confidence 5666555431100 0 0 0000 0 111112333443333221 0 124589999999999999
Q ss_pred HHHHHHhhhh-------ccCCcEE-EEecCC----------C----------CHH-------------------------
Q psy3476 441 IVRAAQEYNE-------KSQGWIV-LPLHST----------L----------SLE------------------------- 467 (1417)
Q Consensus 441 la~~L~~~~~-------~~~~~~V-~~LHs~----------L----------s~~------------------------- 467 (1417)
+++.|.+... ...+..+ ..+|++ + ++.
T Consensus 553 ~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~ 632 (1038)
T 2w00_A 553 YYATFKRLQEEAANKSATYKPLRIATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSN 632 (1038)
T ss_dssp HHHHHHHHHHHHTTTSSSCCCCCEEEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHH
T ss_pred HHHHHHhhhhhhcccccccccCcEEEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccch
Confidence 9999987542 1123444 445542 2 221
Q ss_pred ----HHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC
Q psy3476 468 ----EQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG 543 (1417)
Q Consensus 468 ----eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g 543 (1417)
+|..+.+.|++|..+|||+|+++.+|+|+|.+. |+. +|.|.. ...+.||+||+||.+
T Consensus 633 ~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGfDiP~l~-tly--------lDkpl~----------~~~liQaIGRtnR~~ 693 (1038)
T 2w00_A 633 GFQNYYRDLAQRVKNQDIDLLIVVGMFLTGFDAPTLN-TLF--------VDKNLR----------YHGLMQAFSRTNRIY 693 (1038)
T ss_dssp HHHHHHHHHHHHHHTTSSSEEEESSTTSSSCCCTTEE-EEE--------EESCCC----------HHHHHHHHHTTCCCC
T ss_pred hhhHHHHHHHHHHHcCCCeEEEEcchHHhCcCccccc-EEE--------EccCCC----------ccceeehhhccCcCC
Confidence 477888999999999999999999999999995 454 666654 345559999999988
Q ss_pred C-----CeEEEecC
Q psy3476 544 P-----GVCYRLYS 552 (1417)
Q Consensus 544 ~-----G~cy~L~t 552 (1417)
+ |.++.+..
T Consensus 694 ~~~K~~G~IVdf~~ 707 (1038)
T 2w00_A 694 DATKTFGNIVTFRD 707 (1038)
T ss_dssp CTTCCSEEEEESSC
T ss_pred CCCCCcEEEEEccc
Confidence 5 55665554
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.72 E-value=8.5e-18 Score=178.71 Aligned_cols=129 Identities=19% Similarity=0.339 Sum_probs=105.0
Q ss_pred HHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhc
Q psy3476 413 LSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAET 492 (1417)
Q Consensus 413 l~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~ 492 (1417)
...+.+.+.....+++||||++++.++.+++.|.. .++.+..+||+|++.+|..+++.|++|..+|||||+++++
T Consensus 22 ~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~-----~~~~~~~~~g~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~ 96 (175)
T 2rb4_A 22 YQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQ-----DGHQVSLLSGELTVEQRASIIQRFRDGKEKVLITTNVCAR 96 (175)
T ss_dssp HHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHT-----TTCCEEEECSSCCHHHHHHHHHHHHTTSCSEEEECCSCCT
T ss_pred HHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHH-----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEEecchhc
Confidence 33444444444578999999999999999999987 5688999999999999999999999999999999999999
Q ss_pred cCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHH
Q psy3476 493 SITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSL 558 (1417)
Q Consensus 493 GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~ 558 (1417)
|+|+|++++||+ ||.|.... ...+..+|.||+|||||.| +|.|+.++++.+...
T Consensus 97 Gid~~~~~~Vi~--------~d~p~~~~----~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~~~~~ 151 (175)
T 2rb4_A 97 GIDVKQVTIVVN--------FDLPVKQG----EEPDYETYLHRIGRTGRFGKKGLAFNMIEVDELPS 151 (175)
T ss_dssp TTCCTTEEEEEE--------SSCCC--C----CSCCHHHHHHHHCBC----CCEEEEEEECGGGHHH
T ss_pred CCCcccCCEEEE--------eCCCCCcc----ccCCHHHHHHHhcccccCCCCceEEEEEccchHHH
Confidence 999999999999 88773221 1257778889999999998 799999998876543
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.71 E-value=9.8e-18 Score=176.50 Aligned_cols=112 Identities=21% Similarity=0.415 Sum_probs=98.5
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVV 503 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VI 503 (1417)
..+++||||++++.++.+++.|.. .++.+..+||++++.+|..+++.|++|..+|||||+++++|+|+|++++||
T Consensus 29 ~~~~~lVF~~~~~~~~~l~~~L~~-----~~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi 103 (165)
T 1fuk_A 29 SVTQAVIFCNTRRKVEELTTKLRN-----DKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVI 103 (165)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHH-----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHH-----cCCCEEEEECCCCHHHHHHHHHHHHcCCCEEEEEcChhhcCCCcccCCEEE
Confidence 467999999999999999999987 568899999999999999999999999999999999999999999999999
Q ss_pred cCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHH
Q psy3476 504 DSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSL 558 (1417)
Q Consensus 504 dsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~ 558 (1417)
+ ||.|.+...|. ||+|||||.| +|.|+.++++.+...
T Consensus 104 ~--------~~~p~~~~~~~----------qr~GR~gR~g~~g~~~~~~~~~~~~~ 141 (165)
T 1fuk_A 104 N--------YDLPANKENYI----------HRIGRGGRFGRKGVAINFVTNEDVGA 141 (165)
T ss_dssp E--------SSCCSSGGGGG----------GSSCSCC-----CEEEEEEETTTHHH
T ss_pred E--------eCCCCCHHHHH----------HHhcccccCCCCceEEEEEcchHHHH
Confidence 9 88877666665 9999999998 799999998776543
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.71 E-value=8.9e-18 Score=176.55 Aligned_cols=113 Identities=23% Similarity=0.413 Sum_probs=102.0
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVV 503 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VI 503 (1417)
.++++||||++++.++.+++.|.. .++.+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|++++||
T Consensus 34 ~~~~~lVF~~~~~~~~~l~~~L~~-----~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi 108 (163)
T 2hjv_A 34 NPDSCIIFCRTKEHVNQLTDELDD-----LGYPCDKIHGGMIQEDRFDVMNEFKRGEYRYLVATDVAARGIDIENISLVI 108 (163)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHH-----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTTTCCCSCCSEEE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHH-----cCCcEEEEeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCchhcCCEEE
Confidence 467899999999999999999987 578899999999999999999999999999999999999999999999999
Q ss_pred cCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHHh
Q psy3476 504 DSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLL 559 (1417)
Q Consensus 504 dsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~l 559 (1417)
+ ||.|. |..++.||+||+||.| +|.|+.++++.+...+
T Consensus 109 ~--------~~~p~----------~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~ 147 (163)
T 2hjv_A 109 N--------YDLPL----------EKESYVHRTGRTGRAGNKGKAISFVTAFEKRFL 147 (163)
T ss_dssp E--------SSCCS----------SHHHHHHHTTTSSCTTCCEEEEEEECGGGHHHH
T ss_pred E--------eCCCC----------CHHHHHHhccccCcCCCCceEEEEecHHHHHHH
Confidence 9 88765 4556669999999998 8999999988765543
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.68 E-value=6.1e-16 Score=196.69 Aligned_cols=110 Identities=16% Similarity=0.250 Sum_probs=95.0
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCc---eEEEecchhhccCCcCCeE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLR---KCIVSTNIAETSITIDGIR 500 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~r---kVLVATnIae~GIdIP~V~ 500 (1417)
.+.++|||+.....++.+.+.|.. .++.+..+||+++.++|.++++.|++|.. .+|+||.+++.|+|+++++
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~-----~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~ 489 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRN-----RRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGAN 489 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHH-----HTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEE
T ss_pred CCCEEEEEEccHHHHHHHHHHHHH-----CCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCC
Confidence 357899999999999999998876 56789999999999999999999998864 4899999999999999999
Q ss_pred EEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHHHH
Q psy3476 501 FVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEEQY 556 (1417)
Q Consensus 501 ~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~~~ 556 (1417)
+||. ||++-+ .+.+.|+.||++|.| +..+|++++....
T Consensus 490 ~Vi~--------~d~~wn----------p~~~~Qa~gR~~R~Gq~~~v~v~~lv~~~ti 530 (644)
T 1z3i_X 490 RLVM--------FDPDWN----------PANDEQAMARVWRDGQKKTCYIYRLLSTGTI 530 (644)
T ss_dssp EEEE--------CSCCSS----------HHHHHHHHTTSSSTTCCSCEEEEEEEETTSH
T ss_pred EEEE--------ECCCCC----------ccHHHHHHHhhhhcCCCCceEEEEEEECCCH
Confidence 9999 888754 455559999999998 4568888876543
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-16 Score=203.32 Aligned_cols=127 Identities=20% Similarity=0.181 Sum_probs=105.6
Q ss_pred HHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecch
Q psy3476 410 IRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489 (1417)
Q Consensus 410 ~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnI 489 (1417)
..++..+.+.. ..++++||||+|+..++.+++.|.+ .++.+..+||++++.+|..+++.|++|+.+|+|||++
T Consensus 432 ~~Ll~~l~~~~--~~~~~vlVf~~t~~~ae~L~~~L~~-----~gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~ 504 (661)
T 2d7d_A 432 DDLIGEIQARI--ERNERVLVTTLTKKMSEDLTDYLKE-----IGIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINL 504 (661)
T ss_dssp HHHHHHHHHHH--TTTCEEEEECSSHHHHHHHHHHHHH-----TTCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCC
T ss_pred HHHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHh-----cCCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecch
Confidence 34444454443 2357999999999999999999987 5678899999999999999999999999999999999
Q ss_pred hhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHH
Q psy3476 490 AETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQY 556 (1417)
Q Consensus 490 ae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~ 556 (1417)
+++|+|+|++++||+ ||.+.. ..|.|..+|.||+|||||.++|.|+.++++.+.
T Consensus 505 l~~GlDip~v~lVi~--------~d~d~~-----G~p~s~~~~iQr~GRagR~~~G~~i~~~~~~~~ 558 (661)
T 2d7d_A 505 LREGLDIPEVSLVAI--------LDADKE-----GFLRSERSLIQTIGRAARNAEGRVIMYADKITK 558 (661)
T ss_dssp CSTTCCCTTEEEEEE--------TTTTCC-----TTTTSHHHHHHHHHTTTTSTTCEEEEECSSCCH
T ss_pred hhCCcccCCCCEEEE--------eCcccc-----cCCCCHHHHHHHhCcccCCCCCEEEEEEeCCCH
Confidence 999999999999999 664221 124567778899999999999999999976543
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.7e-17 Score=173.61 Aligned_cols=108 Identities=23% Similarity=0.410 Sum_probs=98.9
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVV 503 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VI 503 (1417)
..+++||||++++.++.+++.|.. .++.+..+||+|++.+|..+++.|++|..+|||||+++++|+|+|++++||
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~-----~~~~~~~~hg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi 104 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVE-----QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF 104 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHH-----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHh-----cCCCEEEEECCCCHHHHHHHHHHHHCCCCcEEEECCchhcCcchhhCCEEE
Confidence 467999999999999999999987 578899999999999999999999999999999999999999999999999
Q ss_pred cCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHH
Q psy3476 504 DSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEE 554 (1417)
Q Consensus 504 dsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~ 554 (1417)
+ ||.|.+ ..+|.||+|||||.| +|.|+.+++..
T Consensus 105 ~--------~d~p~~----------~~~~~qr~GR~~R~g~~g~~~~~~~~~ 138 (172)
T 1t5i_A 105 N--------YDMPED----------SDTYLHRVARAGRFGTKGLAITFVSDE 138 (172)
T ss_dssp E--------SSCCSS----------HHHHHHHHHHHTGGGCCCEEEEEECSH
T ss_pred E--------ECCCCC----------HHHHHHHhcccccCCCCcEEEEEEcCh
Confidence 9 887754 455669999999999 79999999854
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=6e-17 Score=174.12 Aligned_cols=111 Identities=20% Similarity=0.405 Sum_probs=87.2
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVV 503 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VI 503 (1417)
.++++||||++++.++.+++.|.. .++.+..+||++++.+|..+++.|++|..+|||||+++++|+|+|++++||
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~-----~g~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI 119 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYH-----EGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVI 119 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHH-----TTCCEEEEC--------CHHHHHHHHTSSSEEEEEC------CCCSBSEEE
T ss_pred CCCeEEEEECCHHHHHHHHHHHHH-----cCCceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEcChhhcCCCcccCCEEE
Confidence 467899999999999999999987 578899999999999999999999999999999999999999999999999
Q ss_pred cCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHH
Q psy3476 504 DSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYS 557 (1417)
Q Consensus 504 dsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~ 557 (1417)
+ ||+|.+ ..++.||+|||||.| +|.|+.++++.+..
T Consensus 120 ~--------~d~p~s----------~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~ 156 (185)
T 2jgn_A 120 N--------FDLPSD----------IEEYVHRIGRTGRVGNLGLATSFFNERNIN 156 (185)
T ss_dssp E--------SSCCSS----------HHHHHHHHTTBCCTTSCEEEEEEECGGGGG
T ss_pred E--------eCCCCC----------HHHHHHHccccCCCCCCcEEEEEEchhhHH
Confidence 9 887754 455669999999998 89999999977643
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.5e-17 Score=175.40 Aligned_cols=107 Identities=22% Similarity=0.418 Sum_probs=96.0
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEc
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVD 504 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VId 504 (1417)
++++||||++++.++.+++.|.. .++.+..+||++++++|..+++.|++|..+|||||+++++|+|+|++++||+
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~-----~g~~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~ 128 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLL-----KGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVIN 128 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHH-----HTCCEEEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHH-----cCCcEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEE
Confidence 56899999999999999999987 4678999999999999999999999999999999999999999999999999
Q ss_pred CCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHH
Q psy3476 505 SGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEE 554 (1417)
Q Consensus 505 sG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~ 554 (1417)
||+|.+. .+|.||+||+||.| +|.|+.++++.
T Consensus 129 --------~d~p~~~----------~~~~qr~GR~gR~g~~g~~i~l~~~~ 161 (191)
T 2p6n_A 129 --------YDMPEEI----------ENYVHRIGRTGCSGNTGIATTFINKA 161 (191)
T ss_dssp --------SSCCSSH----------HHHHHHHTTSCC---CCEEEEEECTT
T ss_pred --------eCCCCCH----------HHHHHHhCccccCCCCcEEEEEEcCc
Confidence 8887654 45559999999998 89999999864
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.4e-16 Score=201.90 Aligned_cols=111 Identities=20% Similarity=0.151 Sum_probs=96.1
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCC---ceEEEecchhhccCCcCCeE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGL---RKCIVSTNIAETSITIDGIR 500 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~---rkVLVATnIae~GIdIP~V~ 500 (1417)
.+.++|||+.....++.+.+.|.. .++.+..+||+++..+|..+++.|.++. ..+|+||.+++.|||+++++
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~-----~g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~a~ 645 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSI-----KGINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMTAD 645 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHH-----HTCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTTCC
T ss_pred CCCeEEEEechHHHHHHHHHHHHh-----CCCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccccc
Confidence 467999999999999999999976 4688999999999999999999999854 35999999999999999999
Q ss_pred EEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHHHHH
Q psy3476 501 FVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEEQYS 557 (1417)
Q Consensus 501 ~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~~~~ 557 (1417)
+||. ||++-+... ..||.||++|.| +..+|+|+++...+
T Consensus 646 ~VI~--------~D~~wnp~~----------~~Qa~gR~~RiGQ~k~V~Vyrlv~~~TiE 687 (800)
T 3mwy_W 646 TVVI--------FDSDWNPQA----------DLQAMARAHRIGQKNHVMVYRLVSKDTVE 687 (800)
T ss_dssp EEEE--------SSCCSCSHH----------HHHHHTTTSCSSCCSCEEEEEEEETTSHH
T ss_pred eEEE--------ecCCCChhh----------HHHHHHHHHhcCCCceEEEEEEecCCCHH
Confidence 9998 888765544 459999999998 57789999876443
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.5e-17 Score=176.01 Aligned_cols=119 Identities=20% Similarity=0.316 Sum_probs=104.0
Q ss_pred hhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcC
Q psy3476 418 KKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITID 497 (1417)
Q Consensus 418 ~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP 497 (1417)
+.+....++++||||++++.++.+++.|.. .++.+..+||++++.+|..+++.|++|..+|||||+++++|+|+|
T Consensus 23 ~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~-----~~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~~~~Gid~~ 97 (170)
T 2yjt_D 23 HLLKQPEATRSIVFVRKRERVHELANWLRE-----AGINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDVAARGIDIP 97 (170)
Confidence 333334567899999999999999999977 467899999999999999999999999999999999999999999
Q ss_pred CeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHHh
Q psy3476 498 GIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLL 559 (1417)
Q Consensus 498 ~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~l 559 (1417)
++++||+ ||.|.+...|. ||+||+||.| +|.|+.+++..+...+
T Consensus 98 ~~~~Vi~--------~~~p~~~~~~~----------qr~GR~~R~g~~g~~~~~~~~~~~~~~ 142 (170)
T 2yjt_D 98 DVSHVFN--------FDMPRSGDTYL----------HRIGRTARAGRKGTAISLVEAHDHLLL 142 (170)
Confidence 9999999 88776555555 9999999998 8999999988765543
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.2e-15 Score=168.01 Aligned_cols=111 Identities=17% Similarity=0.114 Sum_probs=79.5
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc-----CCCcEEEecchHHHHHHHHHHHHHH
Q psy3476 29 MKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA-----GFQRIACTQPRRIACISLSKRVAYE 103 (1417)
Q Consensus 29 ~~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~-----~~~~i~~tqPrr~aa~~~a~rva~e 103 (1417)
.+..+...-...+.+|.++++.+.++++++++||||||||+++..++++. ...+++|+.|+|.++.++++++..-
T Consensus 55 ~~~l~~~g~~~~~~~Q~~~i~~i~~~~~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~ 134 (249)
T 3ber_A 55 CEACDQLGWTKPTKIQIEAIPLALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEAL 134 (249)
T ss_dssp HHHHHHTTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCHHHHHHHHHHhCCCCEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHH
Confidence 34444445557789999999999999999999999999999877776653 2347999999999999999877543
Q ss_pred HccccCCeEEEEEeeccc------ccCCccEEEEccchhHHhh
Q psy3476 104 TLSQYSNLVGYQIRFEKH------RREKTKIVFITEGLLLRQD 140 (1417)
Q Consensus 104 ~~~~~g~~vGy~ir~e~~------~~~~t~I~~~T~g~llr~l 140 (1417)
....|..++........ ....+.|+++|+|.|++.+
T Consensus 135 -~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l 176 (249)
T 3ber_A 135 -GSSIGVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHL 176 (249)
T ss_dssp -HGGGTCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHH
T ss_pred -hccCCeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHH
Confidence 33445555543332111 1245678888888777654
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.2e-14 Score=159.53 Aligned_cols=104 Identities=16% Similarity=0.100 Sum_probs=72.6
Q ss_pred cCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc-----CCCcEEEecchHHHHHHHHHHHHHHHccccCC
Q psy3476 36 NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA-----GFQRIACTQPRRIACISLSKRVAYETLSQYSN 110 (1417)
Q Consensus 36 ~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~-----~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~ 110 (1417)
.--..+.+|.++++.+.+++++++++|||||||.++..++++. ...++++..|+|.++.++++++..- ....+.
T Consensus 33 g~~~~~~~Q~~~i~~~~~~~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~-~~~~~~ 111 (224)
T 1qde_A 33 GFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMAL-AFHMDI 111 (224)
T ss_dssp TCCSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHH-TTTSCC
T ss_pred CCCCCcHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHH-hcccCc
Confidence 3345689999999999999999999999999999877666653 2358999999999999998877543 333344
Q ss_pred eEEEEEeeccc-----ccCCccEEEEccchhHHhh
Q psy3476 111 LVGYQIRFEKH-----RREKTKIVFITEGLLLRQD 140 (1417)
Q Consensus 111 ~vGy~ir~e~~-----~~~~t~I~~~T~g~llr~l 140 (1417)
.++........ .-...+|+++|++.+++.+
T Consensus 112 ~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~ 146 (224)
T 1qde_A 112 KVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNI 146 (224)
T ss_dssp CEEEECC----------CTTCSEEEECHHHHHHHH
T ss_pred eEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHH
Confidence 44432221111 1123678888888777654
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=1e-14 Score=161.70 Aligned_cols=110 Identities=19% Similarity=0.138 Sum_probs=76.2
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc---------CCCcEEEecchHHHHHHHHHHH
Q psy3476 30 KIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA---------GFQRIACTQPRRIACISLSKRV 100 (1417)
Q Consensus 30 ~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~---------~~~~i~~tqPrr~aa~~~a~rv 100 (1417)
+..+.+.--..+.+|.+++..+.+++++++++|||||||+++..++++. ...+++++.|+|.++.++++++
T Consensus 38 ~~l~~~~~~~~~~~Q~~~i~~~~~~~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 117 (236)
T 2pl3_A 38 KGLQEAQYRLVTEIQKQTIGLALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVL 117 (236)
T ss_dssp HHHHHTTCCBCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHH
T ss_pred HHHHHCCCCCCCHHHHHHHHHHhCCCCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHH
Confidence 3334445556789999999999999999999999999999866655542 2357999999999999998876
Q ss_pred HHHHccccCCeEEEEEeeccc-----ccCCccEEEEccchhHHhh
Q psy3476 101 AYETLSQYSNLVGYQIRFEKH-----RREKTKIVFITEGLLLRQD 140 (1417)
Q Consensus 101 a~e~~~~~g~~vGy~ir~e~~-----~~~~t~I~~~T~g~llr~l 140 (1417)
.. ++...+..++........ ......|+++|+|.+++.+
T Consensus 118 ~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l 161 (236)
T 2pl3_A 118 RK-VGKNHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHM 161 (236)
T ss_dssp HH-HTTTSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHH
T ss_pred HH-HhCCCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHH
Confidence 54 333444455443322111 1134678888887776543
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=99.59 E-value=9e-15 Score=163.15 Aligned_cols=101 Identities=12% Similarity=-0.034 Sum_probs=68.5
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc----------CCCcEEEecchHHHHHHHHHHHHHHHcccc
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA----------GFQRIACTQPRRIACISLSKRVAYETLSQY 108 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~----------~~~~i~~tqPrr~aa~~~a~rva~e~~~~~ 108 (1417)
..+.+|.++++.+.++++++++||||||||..+..+++.. ...++++..|+|.++.|+++.+..- ....
T Consensus 51 ~~~~~Q~~~i~~~~~g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~-~~~~ 129 (242)
T 3fe2_A 51 EPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEY-CRAC 129 (242)
T ss_dssp SCCHHHHHHHHHHHHTCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHH-HHHT
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHH-Hhhc
Confidence 3679999999999999999999999999998866555542 2356899999999999998766443 3333
Q ss_pred CCeEEEEEeeccc------ccCCccEEEEccchhHHhh
Q psy3476 109 SNLVGYQIRFEKH------RREKTKIVFITEGLLLRQD 140 (1417)
Q Consensus 109 g~~vGy~ir~e~~------~~~~t~I~~~T~g~llr~l 140 (1417)
|..++........ .....+|+++|+|.|++.+
T Consensus 130 ~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l 167 (242)
T 3fe2_A 130 RLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFL 167 (242)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHH
T ss_pred CceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHH
Confidence 4444432221111 1123466777776666543
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=159.11 Aligned_cols=100 Identities=12% Similarity=0.035 Sum_probs=67.9
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc-----------CCCcEEEecchHHHHHHHHHHHHHHHccc
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA-----------GFQRIACTQPRRIACISLSKRVAYETLSQ 107 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~-----------~~~~i~~tqPrr~aa~~~a~rva~e~~~~ 107 (1417)
..+.+|.++++.+.++++++++||||||||..+..+++.. ...++++..|+|.++.|+++++.... .
T Consensus 42 ~~~~~Q~~~i~~~~~~~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~--~ 119 (228)
T 3iuy_A 42 KPTPIQSQAWPIILQGIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYS--Y 119 (228)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHC--C
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhc--c
Confidence 4578899999999999999999999999998765555431 33578999999999999988876643 1
Q ss_pred cCCeEEEEEeeccc------ccCCccEEEEccchhHHhh
Q psy3476 108 YSNLVGYQIRFEKH------RREKTKIVFITEGLLLRQD 140 (1417)
Q Consensus 108 ~g~~vGy~ir~e~~------~~~~t~I~~~T~g~llr~l 140 (1417)
.+..++........ ......|+++|+|.+++.+
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~ 158 (228)
T 3iuy_A 120 KGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQ 158 (228)
T ss_dssp TTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHH
T ss_pred cCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHH
Confidence 22233322211111 1233567777777766543
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=156.01 Aligned_cols=70 Identities=13% Similarity=0.161 Sum_probs=57.8
Q ss_pred hcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc--------CCCcEEEecchHHHHHHHHHHHHHHH
Q psy3476 35 QNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA--------GFQRIACTQPRRIACISLSKRVAYET 104 (1417)
Q Consensus 35 r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~--------~~~~i~~tqPrr~aa~~~a~rva~e~ 104 (1417)
..--..+.+|.++++.+.+++++++++|||||||.++..++++. ...+++++.|+|..+.++++++....
T Consensus 19 ~~~~~~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~ 96 (207)
T 2gxq_A 19 RGLTTPTPIQAAALPLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVA 96 (207)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHC
T ss_pred cCCCCCCHHHHHHHHHHcCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHh
Confidence 33345678999999999999999999999999999877777654 23579999999999999988776653
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-14 Score=160.57 Aligned_cols=101 Identities=18% Similarity=0.111 Sum_probs=71.8
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc-----CCCcEEEecchHHHHHHHHHHHHHHHccccCCeEE
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA-----GFQRIACTQPRRIACISLSKRVAYETLSQYSNLVG 113 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~-----~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vG 113 (1417)
..+.+|.++++.+.++++++++||||||||.++..++++. ...++++..|+|.++.++++++.. ++...+..++
T Consensus 52 ~~~~~Q~~ai~~i~~~~~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~ 130 (237)
T 3bor_A 52 KPSAIQQRAIIPCIKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILA-LGDYMGATCH 130 (237)
T ss_dssp SCCHHHHHHHHHHHTTCCEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHH-HTTTTTCCEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHH-HhhhcCceEE
Confidence 3678999999999999999999999999999888777764 235899999999999999887754 3333344443
Q ss_pred EEEeeccc-------ccCCccEEEEccchhHHhh
Q psy3476 114 YQIRFEKH-------RREKTKIVFITEGLLLRQD 140 (1417)
Q Consensus 114 y~ir~e~~-------~~~~t~I~~~T~g~llr~l 140 (1417)
..+..... ......|+++|+|.|++.+
T Consensus 131 ~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l 164 (237)
T 3bor_A 131 ACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDML 164 (237)
T ss_dssp EECC-------------CCCSEEEECHHHHHHHH
T ss_pred EEECCCchHHHHHHHhcCCCCEEEECHHHHHHHH
Confidence 32222111 1122578888887777654
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.3e-14 Score=157.23 Aligned_cols=105 Identities=15% Similarity=0.059 Sum_probs=72.7
Q ss_pred hcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC-----CCcEEEecchHHHHHHHHHHHHHHHcccc-
Q psy3476 35 QNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG-----FQRIACTQPRRIACISLSKRVAYETLSQY- 108 (1417)
Q Consensus 35 r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~-----~~~i~~tqPrr~aa~~~a~rva~e~~~~~- 108 (1417)
..--..+.+|.++++.+.+++++++++|||||||.++..++++.. ..++++..|+|.++.|+++++.+-.. ..
T Consensus 22 ~g~~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~ 100 (219)
T 1q0u_A 22 LRFYKPTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITK-FCP 100 (219)
T ss_dssp TTCCSCCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHT-TSC
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhh-hcc
Confidence 344456889999999999999999999999999998777776642 35799999999999999887755432 22
Q ss_pred ---CCeEEEEEeeccc------ccCCccEEEEccchhHHhh
Q psy3476 109 ---SNLVGYQIRFEKH------RREKTKIVFITEGLLLRQD 140 (1417)
Q Consensus 109 ---g~~vGy~ir~e~~------~~~~t~I~~~T~g~llr~l 140 (1417)
+..++........ ......|+++|+|.+.+.+
T Consensus 101 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l 141 (219)
T 1q0u_A 101 KDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFI 141 (219)
T ss_dssp GGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHH
T ss_pred cccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHH
Confidence 2333332222111 1124567777777766544
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.56 E-value=5.5e-14 Score=152.14 Aligned_cols=102 Identities=17% Similarity=0.095 Sum_probs=70.6
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC-----CCcEEEecchHHHHHHHHHHHHHHHccccCCeEE
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG-----FQRIACTQPRRIACISLSKRVAYETLSQYSNLVG 113 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~-----~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vG 113 (1417)
..+.+|.++++.+.+++++++++|||||||..+..++++.. ..++++..|+|..+.++++++..-.....+..++
T Consensus 25 ~~~~~Q~~~i~~~~~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 104 (206)
T 1vec_A 25 KPSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVM 104 (206)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEE
T ss_pred CCCHHHHHHHHHHccCCCEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEE
Confidence 46789999999999999999999999999988777776542 2479999999999999988775543221134444
Q ss_pred EEEeeccc------ccCCccEEEEccchhHHhh
Q psy3476 114 YQIRFEKH------RREKTKIVFITEGLLLRQD 140 (1417)
Q Consensus 114 y~ir~e~~------~~~~t~I~~~T~g~llr~l 140 (1417)
........ .....+|+++|++.+.+.+
T Consensus 105 ~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~ 137 (206)
T 1vec_A 105 ATTGGTNLRDDIMRLDDTVHVVIATPGRILDLI 137 (206)
T ss_dssp EECSSSCHHHHHHHTTSCCSEEEECHHHHHHHH
T ss_pred EEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHH
Confidence 33221111 1234567777776665543
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.9e-14 Score=163.64 Aligned_cols=106 Identities=17% Similarity=0.198 Sum_probs=76.8
Q ss_pred cCCCcHHHHHHHHHHHhcC--CeEEEEcCCCcchhHHHHHHHHHcC-----CCcEEEecchHHHHHHHHHHHHHHHcccc
Q psy3476 36 NSLPVAQYKQEIIDTVLKE--RVVIIAGDTGCGKSTQIPQYLVQAG-----FQRIACTQPRRIACISLSKRVAYETLSQY 108 (1417)
Q Consensus 36 ~~lp~~~~q~~il~~i~~~--~~~iI~a~TGsGKTt~ipq~ile~~-----~~~i~~tqPrr~aa~~~a~rva~e~~~~~ 108 (1417)
.--..+.+|.+++..+..+ ++++++||||||||..+..++++.. ..+++|..|+|.+|.|+++.+..-.....
T Consensus 111 g~~~pt~iQ~~ai~~il~~~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~ 190 (300)
T 3fmo_B 111 GFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYP 190 (300)
T ss_dssp TCCSCCHHHHHHHHHHTSSSCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTST
T ss_pred CCCCCCHHHHHHHHHHHcCCCCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCC
Confidence 3344567899999999987 8999999999999998777777543 23799999999999999887654332222
Q ss_pred CCeEEEEEeeccc---ccCCccEEEEccchhHHhhc
Q psy3476 109 SNLVGYQIRFEKH---RREKTKIVFITEGLLLRQDS 141 (1417)
Q Consensus 109 g~~vGy~ir~e~~---~~~~t~I~~~T~g~llr~l~ 141 (1417)
+..+++.++.... .....+|+++|+|.|++.+.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~ 226 (300)
T 3fmo_B 191 ELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCS 226 (300)
T ss_dssp TCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHT
T ss_pred CcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHH
Confidence 4455555443322 22346799999999887764
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=5.1e-14 Score=155.86 Aligned_cols=102 Identities=13% Similarity=0.046 Sum_probs=70.9
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC-----CCcEEEecchHHHHHHHHHHHHHHHccccCCeEE
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG-----FQRIACTQPRRIACISLSKRVAYETLSQYSNLVG 113 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~-----~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vG 113 (1417)
..+.+|.++++.+.+++++++++|||||||.++..++++.. ..++++..|+|..+.|+++++........+..++
T Consensus 46 ~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~ 125 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRCGLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECH 125 (230)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEE
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEE
Confidence 36899999999999999999999999999998766665532 3589999999999999988776543221244444
Q ss_pred EEEeeccc-----ccCCccEEEEccchhHHhh
Q psy3476 114 YQIRFEKH-----RREKTKIVFITEGLLLRQD 140 (1417)
Q Consensus 114 y~ir~e~~-----~~~~t~I~~~T~g~llr~l 140 (1417)
........ ......|+++|+|.+++.+
T Consensus 126 ~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~ 157 (230)
T 2oxc_A 126 VFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLI 157 (230)
T ss_dssp EECTTSCHHHHHHHTTSCSEEEECHHHHHHHH
T ss_pred EEeCCCCHHHHHHhccCCCEEEECHHHHHHHH
Confidence 32221110 1124567777777666543
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=9.7e-14 Score=154.72 Aligned_cols=103 Identities=15% Similarity=0.117 Sum_probs=71.7
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc------CCCcEEEecchHHHHHHHHHHHHHHHccccCCe
Q psy3476 38 LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA------GFQRIACTQPRRIACISLSKRVAYETLSQYSNL 111 (1417)
Q Consensus 38 lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~------~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~ 111 (1417)
-..+.+|.++++.+.++++++++||||||||..+..++++. ...++++..|+|.++.|+++++.+- ....|..
T Consensus 50 ~~~~~~Q~~~i~~~~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~-~~~~~~~ 128 (245)
T 3dkp_A 50 QMPTPIQMQAIPVMLHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKI-SEGTGFR 128 (245)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHH-TTTSCCC
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHH-hcccCce
Confidence 34688999999999999999999999999999866666542 2247999999999999998876543 3333433
Q ss_pred EEEEEe-------ecccccCCccEEEEccchhHHhhc
Q psy3476 112 VGYQIR-------FEKHRREKTKIVFITEGLLLRQDS 141 (1417)
Q Consensus 112 vGy~ir-------~e~~~~~~t~I~~~T~g~llr~l~ 141 (1417)
++.... ..........|+++|+|.+...+.
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~ 165 (245)
T 3dkp_A 129 IHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLK 165 (245)
T ss_dssp EECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHH
T ss_pred EEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHH
Confidence 332111 111123345778888877776553
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.3e-14 Score=160.86 Aligned_cols=102 Identities=17% Similarity=0.174 Sum_probs=72.2
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc---------CCCcEEEecchHHHHHHHHHHHHHHHcccc
Q psy3476 38 LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA---------GFQRIACTQPRRIACISLSKRVAYETLSQY 108 (1417)
Q Consensus 38 lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~---------~~~~i~~tqPrr~aa~~~a~rva~e~~~~~ 108 (1417)
-..+.+|.+++..+..+++++++||||||||..+..++++. ...++++..|+|.+|.++++++.+. ....
T Consensus 75 ~~~~~~Q~~~i~~~~~~~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~-~~~~ 153 (262)
T 3ly5_A 75 TNMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKEL-MTHH 153 (262)
T ss_dssp CBCCHHHHHHHHHHHHTCCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHH-TTTC
T ss_pred CCCCHHHHHHHHHHhCCCcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHH-Hhhc
Confidence 33678999999999999999999999999998766555531 2357999999999999998877553 3445
Q ss_pred CCeEEEEEeecccc------cCCccEEEEccchhHHhh
Q psy3476 109 SNLVGYQIRFEKHR------REKTKIVFITEGLLLRQD 140 (1417)
Q Consensus 109 g~~vGy~ir~e~~~------~~~t~I~~~T~g~llr~l 140 (1417)
+..++..+...... ....+|+++|+|.+++.+
T Consensus 154 ~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~ 191 (262)
T 3ly5_A 154 VHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHM 191 (262)
T ss_dssp CSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHH
T ss_pred CceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHH
Confidence 55555443322211 123567777777776544
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-13 Score=150.39 Aligned_cols=64 Identities=17% Similarity=0.158 Sum_probs=55.0
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc-----CCCcEEEecchHHHHHHHHHHHHHH
Q psy3476 40 VAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA-----GFQRIACTQPRRIACISLSKRVAYE 103 (1417)
Q Consensus 40 ~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~-----~~~~i~~tqPrr~aa~~~a~rva~e 103 (1417)
.+.+|.++++.+.+++++++++|||||||..+..++++. +..+++++.|+|..+.|+++++.+-
T Consensus 37 ~~~~Q~~~i~~~~~~~~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 105 (220)
T 1t6n_A 37 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERF 105 (220)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHH
Confidence 679999999999999999999999999999887777764 2248999999999999998877554
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.47 E-value=3.8e-13 Score=150.74 Aligned_cols=101 Identities=13% Similarity=0.130 Sum_probs=68.8
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc--------------CCCcEEEecchHHHHHHHHHHHHHHH
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA--------------GFQRIACTQPRRIACISLSKRVAYET 104 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~--------------~~~~i~~tqPrr~aa~~~a~rva~e~ 104 (1417)
..+.+|.++++.+.+++++++++|||||||..+..++++. ...++++..|+|.++.++++++....
T Consensus 45 ~~~~~Q~~~i~~i~~~~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 124 (253)
T 1wrb_A 45 RPTPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFS 124 (253)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHh
Confidence 3578999999999999999999999999998766555532 12479999999999999988765532
Q ss_pred ccccCCeEEEEEeeccc------ccCCccEEEEccchhHHhh
Q psy3476 105 LSQYSNLVGYQIRFEKH------RREKTKIVFITEGLLLRQD 140 (1417)
Q Consensus 105 ~~~~g~~vGy~ir~e~~------~~~~t~I~~~T~g~llr~l 140 (1417)
...+..++........ ......|+++|+|.|++.+
T Consensus 125 -~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l 165 (253)
T 1wrb_A 125 -LNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFI 165 (253)
T ss_dssp -TTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHH
T ss_pred -ccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHH
Confidence 2233333322211111 1234567777777666543
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=8.6e-13 Score=166.53 Aligned_cols=99 Identities=9% Similarity=-0.030 Sum_probs=71.0
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHH--cCCCcEEEecchHHHHHHHHHHHHHHHccccCCeEEEEE
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ--AGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQI 116 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile--~~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy~i 116 (1417)
--+..|...+..+.+++ |..+.||||||..+..+++- .....+.|..|+|.+|.+.++.+.. +...+|-+||..+
T Consensus 79 ~Pt~VQ~~~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~-l~~~lGLsv~~i~ 155 (997)
T 2ipc_A 79 RHFDVQLIGGAVLHEGK--IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGP-VYRGLGLSVGVIQ 155 (997)
T ss_dssp CCCHHHHHHHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHH-HHHTTTCCEEECC
T ss_pred CCcHHHHhhcccccCCc--eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHH-HHHhcCCeEEEEe
Confidence 33788888888888888 89999999999876555532 2224677788999999998876544 3456788888755
Q ss_pred eecc----cccCCccEEEEccchh-HHhh
Q psy3476 117 RFEK----HRREKTKIVFITEGLL-LRQD 140 (1417)
Q Consensus 117 r~e~----~~~~~t~I~~~T~g~l-lr~l 140 (1417)
...+ +....+.|+|+|+|.| ++.+
T Consensus 156 Gg~~~~~r~~ay~~DIvyGTpgrlgfDyL 184 (997)
T 2ipc_A 156 HASTPAERRKAYLADVTYVTNSELGFDYL 184 (997)
T ss_dssp TTCCHHHHHHHHTSSEEEEEHHHHHHHHH
T ss_pred CCCCHHHHHHHcCCCEEEECchhhhhHHH
Confidence 4322 1123578999999998 5554
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-12 Score=140.57 Aligned_cols=106 Identities=15% Similarity=0.102 Sum_probs=71.6
Q ss_pred HhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc--------CCCcEEEecchHHHHHH-HHHHHHHHH
Q psy3476 34 TQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA--------GFQRIACTQPRRIACIS-LSKRVAYET 104 (1417)
Q Consensus 34 ~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~--------~~~~i~~tqPrr~aa~~-~a~rva~e~ 104 (1417)
.....+.+.+|.++++.+.+++.++|.+|||||||+++..++.+. ...+++++.|++..+.+ +.+.+. .+
T Consensus 28 ~~~~~~l~~~Q~~~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~-~~ 106 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQ-PF 106 (216)
T ss_dssp CSCCCCCCHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHH-HH
T ss_pred ccCCCCchHHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHH-HH
Confidence 345678899999999999999999999999999999877666542 13588999999998888 444443 33
Q ss_pred ccccCCeEEEEEeecc------cccCCccEEEEccchhHHhhc
Q psy3476 105 LSQYSNLVGYQIRFEK------HRREKTKIVFITEGLLLRQDS 141 (1417)
Q Consensus 105 ~~~~g~~vGy~ir~e~------~~~~~t~I~~~T~g~llr~l~ 141 (1417)
... +..|+....... .......|+++|++.|.+.+.
T Consensus 107 ~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~ 148 (216)
T 3b6e_A 107 LKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLL 148 (216)
T ss_dssp HTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHH
T ss_pred hcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHh
Confidence 221 223332111110 011236788888888877654
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.21 E-value=7.9e-13 Score=170.18 Aligned_cols=147 Identities=15% Similarity=0.095 Sum_probs=116.5
Q ss_pred hhhhhHHHhhhccccccC---CCcccccccHHH-Hhhhhc---CCccchhhcchHH------HHHHHHHhcCC----Ccc
Q psy3476 794 IEEEEEEEEGERLESRTG---PGVCYRLYSEEQ-YSLLAE---YSTPEIRRVSIDS------LLLSLVCMGLG----DVR 856 (1417)
Q Consensus 794 ~~s~~~~~qR~~~agR~~---pG~CyRLyt~~~-~~~l~~---~~~PEI~r~~L~~------~vL~lk~~g~~----~~~ 856 (1417)
..|.+...||.|||||.+ +|.||++|++.. +..+.+ ...||+.+++|.. .+|.++++|.- ++.
T Consensus 377 ~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~ 456 (715)
T 2va8_A 377 EIPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLE 456 (715)
T ss_dssp --CHHHHHHHHTTBCCTTTCSCEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHH
T ss_pred cCCHHHHHHHhhhcCCCCCCCCceEEEEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHH
Confidence 477999999999999999 999999998876 433322 5689999998876 68888888832 232
Q ss_pred cC---CCCC-CCCccchHHHHHHHhhccccccc---cccchhhhhcccCCCCccccchhhhcccc---cchhhHHHHHHh
Q psy3476 857 KF---PFLE-APPAENIESSVRSLTQHGAIDSK---ERVTTLGRFLSDLPVDIPLGKMLVFGSMF---HQIDTMLLLDLA 926 (1417)
Q Consensus 857 ~f---~~l~-~P~~~~l~~A~~~L~~lgald~~---~~lT~lG~~l~~lPvdp~lak~Ll~~~~~---~cl~~~l~i~a~ 926 (1417)
.| .|+. +|+...+..|++.|..+|+|+.+ ..+|++|+.|+.+|++|+.|+|++.+... .|..+++.|+|+
T Consensus 457 ~~l~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 536 (715)
T 2va8_A 457 NFAYESLLAKQLVDVYFDRAIRWLLEHSFIKEEGNTFALTNFGKRVADLYINPFTADIIRKGLEGHKASCELAYLHLLAF 536 (715)
T ss_dssp HHHTTSSSCHHHHHHHHHHHHHHHHHTTSEEECSSEEEECHHHHHHHHHTCCHHHHHHHHHHHHHSCCCCHHHHHHHHHH
T ss_pred HHHHhhHHHhhcchHHHHHHHHHHHHCcCEeecCCeEeeChHHHHHHHHcCCHhHHHHHHHHhhhccCCCHHHHHHHhhc
Confidence 22 3443 55566799999999999999876 48999999999999999999999999887 799999998887
Q ss_pred hc-cccccchhhhcc
Q psy3476 927 LN-FGAIDSKERVTS 940 (1417)
Q Consensus 927 ls-~~~~~~~~~~~~ 940 (1417)
.+ +++++.++.+..
T Consensus 537 ~~e~~~~~~r~~e~~ 551 (715)
T 2va8_A 537 TPDGPLVSVGRNEEE 551 (715)
T ss_dssp STTSCCCCCCHHHHH
T ss_pred CcccccCccChHHHH
Confidence 77 566665555443
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=99.19 E-value=3.6e-11 Score=137.19 Aligned_cols=66 Identities=14% Similarity=0.053 Sum_probs=54.3
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHH---cCCCcEEEecchHHHHHHHHHHHHHH
Q psy3476 38 LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ---AGFQRIACTQPRRIACISLSKRVAYE 103 (1417)
Q Consensus 38 lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile---~~~~~i~~tqPrr~aa~~~a~rva~e 103 (1417)
+..+.+|.++++.+.+++..+|++|||||||.++...+.. .+..+++++.|++..+.+..+++.+.
T Consensus 112 ~~l~~~Q~~ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~ 180 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDY 180 (282)
T ss_dssp CCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHH
T ss_pred cCccHHHHHHHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHh
Confidence 5778999999998888888899999999999987655543 34458999999999988888887654
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=99.17 E-value=5e-12 Score=162.40 Aligned_cols=145 Identities=19% Similarity=0.196 Sum_probs=118.4
Q ss_pred hhhhhHHHhhhccccccC---CCcccccccHHHHhhhhc---CCccchhhcchHH------HHHHHHHhcC-CCcc---c
Q psy3476 794 IEEEEEEEEGERLESRTG---PGVCYRLYSEEQYSLLAE---YSTPEIRRVSIDS------LLLSLVCMGL-GDVR---K 857 (1417)
Q Consensus 794 ~~s~~~~~qR~~~agR~~---pG~CyRLyt~~~~~~l~~---~~~PEI~r~~L~~------~vL~lk~~g~-~~~~---~ 857 (1417)
..|.+...||.|||||.+ +|.||++|++..++.+.+ ...||+.+++|.. .+|.++++|. .+.. .
T Consensus 357 ~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~ 436 (702)
T 2p6r_A 357 RIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELED 436 (702)
T ss_dssp ECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHH
T ss_pred cCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHH
Confidence 467899999999999999 999999999988765443 5789999998876 6778888883 2222 1
Q ss_pred C---CCC----CCCCccchHHHHHHHhhccccccc--cccchhhhhcccCCCCccccchhhhcccc--cchhhHHHHHHh
Q psy3476 858 F---PFL----EAPPAENIESSVRSLTQHGAIDSK--ERVTTLGRFLSDLPVDIPLGKMLVFGSMF--HQIDTMLLLDLA 926 (1417)
Q Consensus 858 f---~~l----~~P~~~~l~~A~~~L~~lgald~~--~~lT~lG~~l~~lPvdp~lak~Ll~~~~~--~cl~~~l~i~a~ 926 (1417)
| .|+ ++|+.+.+..|++.|..+|+|+.+ +.+|++|+.|+.+|++|+.++|++.+... .|..+++.++|+
T Consensus 437 ~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~ 516 (702)
T 2p6r_A 437 FFADTFFFKQNEISLSYELERVVRQLENWGMVVEAAHLAPTKLGSLVSRLYIDPLTGFIFHDVLSRMELSDIGALHLICR 516 (702)
T ss_dssp HHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSEEESSSEEECHHHHHHHHTTCCHHHHHHHHHHTTTCCCCHHHHHHHHHH
T ss_pred HHHhhhHHHhhhHHHHHHHHHHHHHHHHCcCeeECCeeccChHHHHHHHHhCCHHHHHHHHHHhhcccCCHHHHHHHhhC
Confidence 1 222 378889999999999999999977 88999999999999999999999999888 899999999887
Q ss_pred hc-cccccchhhh
Q psy3476 927 LN-FGAIDSKERV 938 (1417)
Q Consensus 927 ls-~~~~~~~~~~ 938 (1417)
.+ +.++..++.+
T Consensus 517 ~~e~~~i~~r~~e 529 (702)
T 2p6r_A 517 TPDMERLTVRKTD 529 (702)
T ss_dssp STTSCCCCCCTTT
T ss_pred CcccccCCCCCch
Confidence 77 3445444433
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.14 E-value=3.4e-11 Score=137.07 Aligned_cols=122 Identities=20% Similarity=0.169 Sum_probs=90.2
Q ss_pred HHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCC-Cce-EEEecc
Q psy3476 411 RILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEG-LRK-CIVSTN 488 (1417)
Q Consensus 411 ~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G-~rk-VLVATn 488 (1417)
.+.+.+.+.. ..+.++|||+.....++.+.+.|... .++.+..+||+++.++|..+++.|++| ..+ +|+||+
T Consensus 100 ~L~~ll~~~~--~~~~kvlIFs~~~~~~~~l~~~L~~~----~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~ 173 (271)
T 1z5z_A 100 RTMEIIEEAL--DEGDKIAIFTQFVDMGKIIRNIIEKE----LNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVK 173 (271)
T ss_dssp HHHHHHHHHH--HTTCCEEEEESCHHHHHHHHHHHHHH----HCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECC
T ss_pred HHHHHHHHHH--hCCCeEEEEeccHHHHHHHHHHHHHh----cCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehh
Confidence 3444444432 23679999999999999999998762 156788899999999999999999988 566 789999
Q ss_pred hhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHHHH
Q psy3476 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEEQY 556 (1417)
Q Consensus 489 Iae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~~~ 556 (1417)
++++|+|++++++||+ ||++.+...+. ||.||++|.| +-.+|+++++...
T Consensus 174 ~~g~Glnl~~a~~VI~--------~d~~wnp~~~~----------Q~~gR~~R~Gq~~~v~v~~li~~~Ti 226 (271)
T 1z5z_A 174 AGGFGINLTSANRVIH--------FDRWWNPAVED----------QATDRVYRIGQTRNVIVHKLISVGTL 226 (271)
T ss_dssp TTCCCCCCTTCSEEEE--------CSCCSCTTTC------------------------CCEEEEEEETTSH
T ss_pred hhcCCcCcccCCEEEE--------ECCCCChhHHH----------HHHHhccccCCCCceEEEEEeeCCCH
Confidence 9999999999999999 99988877777 9999999998 4567888876543
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.12 E-value=4.2e-10 Score=140.23 Aligned_cols=127 Identities=13% Similarity=0.095 Sum_probs=70.1
Q ss_pred HHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEE--ecc
Q psy3476 411 RILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIV--STN 488 (1417)
Q Consensus 411 ~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLV--ATn 488 (1417)
.+.+.+.+.+. ..+|.+|||+||....+.+++.+.. ..+ ..++.. .++..+++.|++|. .|++ +|.
T Consensus 371 ~~~~~l~~~~~-~~~g~~lvff~S~~~~~~v~~~l~~-------~~~-~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~ 438 (540)
T 2vl7_A 371 IYSILLKRIYE-NSSKSVLVFFPSYEMLESVRIHLSG-------IPV-IEENKK--TRHEEVLELMKTGK-YLVMLVMRA 438 (540)
T ss_dssp HHHHHHHHHHH-TCSSEEEEEESCHHHHHHHHTTCTT-------SCE-EESTTT--CCHHHHHHHHHTSC-CEEEEEC--
T ss_pred HHHHHHHHHHH-hCCCCEEEEeCCHHHHHHHHHHhcc-------Cce-EecCCC--CcHHHHHHHHhcCC-eEEEEEecC
Confidence 34444444443 3467899999999999999877643 222 335443 35777888887764 5666 899
Q ss_pred hhhccCCcCC----eEEEEcCCcccceecccCC-------------CccccceeecCHhhHHhhcCcCCCCC--CCeEEE
Q psy3476 489 IAETSITIDG----IRFVVDSGKVKEMSYDVTA-------------KMSTLQEFWISKASAEQRKGRAGRTG--PGVCYR 549 (1417)
Q Consensus 489 Iae~GIdIP~----V~~VIdsG~~k~~~yD~~~-------------~~~~l~~~~ISkasa~QR~GRAGR~g--~G~cy~ 549 (1417)
.+..|||+|+ +++||..|+.....-|+.. +...|. .+.......|-+||+-|.. .|..+.
T Consensus 439 ~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Q~~GR~iR~~~D~g~v~l 517 (540)
T 2vl7_A 439 KESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSII-HDLTAIVIKQTIGRAFRDPNDYVKIYL 517 (540)
T ss_dssp -------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHHH-HHHHHHHHHHHHHHHCCSTTCCCEEEE
T ss_pred ceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHHH-HHHHHHHHHHHhCCcccCCCccEEEEE
Confidence 9999999998 8999987775322211100 000011 1122456789999999986 477664
Q ss_pred e
Q psy3476 550 L 550 (1417)
Q Consensus 550 L 550 (1417)
+
T Consensus 518 l 518 (540)
T 2vl7_A 518 C 518 (540)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.02 E-value=2.1e-09 Score=119.86 Aligned_cols=94 Identities=14% Similarity=0.133 Sum_probs=68.5
Q ss_pred cCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCCCcEEEecchHHHHHHHHHHHHHHHccccCCe-EEE
Q psy3476 36 NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNL-VGY 114 (1417)
Q Consensus 36 ~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~-vGy 114 (1417)
.....+.+|.++++.+.+++.++|+||||+|||.++..++... ..++++..|++..+.+..+++.+ +|.. ++.
T Consensus 90 ~~~~l~~~Q~~ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-~~~~liv~P~~~L~~q~~~~~~~-----~~~~~v~~ 163 (237)
T 2fz4_A 90 AEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-STPTLIVVPTLALAEQWKERLGI-----FGEEYVGE 163 (237)
T ss_dssp CCCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-CSCEEEEESSHHHHHHHHHHHGG-----GCGGGEEE
T ss_pred CCCCcCHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc-CCCEEEEeCCHHHHHHHHHHHHh-----CCCCeEEE
Confidence 3456789999999999999899999999999999988777765 45778888998777776665544 3444 553
Q ss_pred EEeecccccCCccEEEEccchhHH
Q psy3476 115 QIRFEKHRREKTKIVFITEGLLLR 138 (1417)
Q Consensus 115 ~ir~e~~~~~~t~I~~~T~g~llr 138 (1417)
... .......|+++|.+.+.+
T Consensus 164 ~~g---~~~~~~~i~v~T~~~l~~ 184 (237)
T 2fz4_A 164 FSG---RIKELKPLTVSTYDSAYV 184 (237)
T ss_dssp ESS---SCBCCCSEEEEEHHHHHH
T ss_pred EeC---CCCCcCCEEEEeHHHHHh
Confidence 222 223456788888776554
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.4e-10 Score=147.17 Aligned_cols=146 Identities=15% Similarity=0.001 Sum_probs=111.0
Q ss_pred hhhhhHHHhhhccccccC---CCcccccccHHHHh----hhhcCCccchhhc-----chHHHHHHHHHhcCC----Ccc-
Q psy3476 794 IEEEEEEEEGERLESRTG---PGVCYRLYSEEQYS----LLAEYSTPEIRRV-----SIDSLLLSLVCMGLG----DVR- 856 (1417)
Q Consensus 794 ~~s~~~~~qR~~~agR~~---pG~CyRLyt~~~~~----~l~~~~~PEI~r~-----~L~~~vL~lk~~g~~----~~~- 856 (1417)
..|.+...||.|||||.+ +|.||++|++..++ .+....+++|... .|...++.+++.|.. ++.
T Consensus 356 ~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~ 435 (720)
T 2zj8_A 356 RIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILK 435 (720)
T ss_dssp ECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHH
T ss_pred cCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHHHHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHH
Confidence 477899999999999998 89999999987643 3444555555433 456667777777632 122
Q ss_pred --cCCCC------CCCCccchHHHHHHHhhccccc-ccc---ccchhhhhcccCCCCccccchhhhcccc----cchhhH
Q psy3476 857 --KFPFL------EAPPAENIESSVRSLTQHGAID-SKE---RVTTLGRFLSDLPVDIPLGKMLVFGSMF----HQIDTM 920 (1417)
Q Consensus 857 --~f~~l------~~P~~~~l~~A~~~L~~lgald-~~~---~lT~lG~~l~~lPvdp~lak~Ll~~~~~----~cl~~~ 920 (1417)
.+.|+ ++|..+.+..|++.|...|+|+ .++ .+|++|+.|+.+|++|..+++++.+... .|..++
T Consensus 436 ~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i~~~~~~~~~~t~lG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 515 (720)
T 2zj8_A 436 FISNTFYAYQRKDTYSLEEKIRNILYFLLENEFIEISLEDKIRPLSLGIRTAKLYIDPYTAKMFKDKMEEVVKDPNPIGI 515 (720)
T ss_dssp HHHTSHHHHHCSCCHHHHHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCCHHHH
T ss_pred HHHhChHHHhccchHHHHHHHHHHHHHHHHCCCeeECCCCcEeeChHHHHHHHHcCCHHHHHHHHHHHHhhccCCCHHHH
Confidence 22443 2233467999999999999998 655 7999999999999999999999998887 899999
Q ss_pred HHHHHhhc-cccccchhhhc
Q psy3476 921 LLLDLALN-FGAIDSKERVT 939 (1417)
Q Consensus 921 l~i~a~ls-~~~~~~~~~~~ 939 (1417)
+.|+|+++ +++++.++.+.
T Consensus 516 l~i~~~~~e~~~i~~r~~e~ 535 (720)
T 2zj8_A 516 FHLISLTPDITPFNYSKREF 535 (720)
T ss_dssp HHHHHTSTTCCCCCCCHHHH
T ss_pred HHHhccCccccccccCHHHH
Confidence 99999988 46665554443
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=98.81 E-value=5.2e-08 Score=121.72 Aligned_cols=127 Identities=17% Similarity=0.079 Sum_probs=77.5
Q ss_pred HHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEec--
Q psy3476 410 IRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST-- 487 (1417)
Q Consensus 410 ~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVAT-- 487 (1417)
..+.+.|.+... ..+|.+|||+|+....+.+++. .+..++.=..+++..+..+.++ .++ .-|++||
T Consensus 379 ~~l~~~i~~l~~-~~~g~~lvlF~Sy~~l~~v~~~--------~~~~v~~q~~~~~~~~~~~~~~--~~~-~~vl~~v~g 446 (551)
T 3crv_A 379 KRYADYLLKIYF-QAKANVLVVFPSYEIMDRVMSR--------ISLPKYVESEDSSVEDLYSAIS--ANN-KVLIGSVGK 446 (551)
T ss_dssp HHHHHHHHHHHH-HCSSEEEEEESCHHHHHHHHTT--------CCSSEEECCSSCCHHHHHHHTT--SSS-SCEEEEESS
T ss_pred HHHHHHHHHHHH-hCCCCEEEEecCHHHHHHHHHh--------cCCcEEEcCCCCCHHHHHHHHH--hcC-CeEEEEEec
Confidence 445555554432 3467899999999999888762 2334444444566555544443 233 4799998
Q ss_pred chhhccCCcC---C--eEEEEcCCcccceecccC-----------CCcccc---ceeecCHhhHHhhcCcCCCCC--CCe
Q psy3476 488 NIAETSITID---G--IRFVVDSGKVKEMSYDVT-----------AKMSTL---QEFWISKASAEQRKGRAGRTG--PGV 546 (1417)
Q Consensus 488 nIae~GIdIP---~--V~~VIdsG~~k~~~yD~~-----------~~~~~l---~~~~ISkasa~QR~GRAGR~g--~G~ 546 (1417)
.....|||+| + .+.||-.|+.-... |+. .+.+.+ ...| ......|-+||+=|.. .|.
T Consensus 447 g~~~EGiD~~d~~g~~l~~viI~~lPfp~~-dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~ 524 (551)
T 3crv_A 447 GKLAEGIELRNNDRSLISDVVIVGIPYPPP-DDYLKILAQRVSLKMNRENEEFLFKIP-ALVTIKQAIGRAIRDVNDKCN 524 (551)
T ss_dssp CCSCCSSCCEETTEESEEEEEEESCCCCCC-SHHHHHHHHHTTCCSSTTTHHHHTHHH-HHHHHHHHHHTTCCSTTCEEE
T ss_pred ceecccccccccCCcceeEEEEEcCCCCCC-CHHHHHHHHHHHHhhCCchhHHHHHHH-HHHHHHHHhccCccCCCccEE
Confidence 6899999999 3 67777667643322 221 111111 1223 4456779999999987 366
Q ss_pred EEEe
Q psy3476 547 CYRL 550 (1417)
Q Consensus 547 cy~L 550 (1417)
.+.+
T Consensus 525 v~ll 528 (551)
T 3crv_A 525 VWLL 528 (551)
T ss_dssp EEEE
T ss_pred EEEe
Confidence 6644
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.85 E-value=7.9e-07 Score=98.54 Aligned_cols=77 Identities=30% Similarity=0.425 Sum_probs=67.4
Q ss_pred HHhcCChhhHHhhcccccccchHHHHHHHhhhccccchhHHHHHHhhccchhhhHhhhhccccccchhhhcccccccc
Q psy3476 1105 FRLKHDPKQVQVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKDL 1182 (1417)
Q Consensus 1105 ~~~~~~g~~l~~~~~~~ls~~t~~iide~her~~~~d~ll~~l~~~~~~~~~lk~ilmsat~~~~~f~~yf~~~~~~~ 1182 (1417)
+-++|.|.+++.... .++++.++||||+|+|.++.|+++..++..+...++.++++||||++.+.|..||+++|+..
T Consensus 158 Ivv~Tpg~l~~~l~~-~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~~~pvi~ 234 (235)
T 3llm_A 158 IMFCTVGVLLRKLEA-GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYFFNCPIIE 234 (235)
T ss_dssp EEEEEHHHHHHHHHH-CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHTTSCCCEE
T ss_pred EEEECHHHHHHHHHh-hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHcCCCCEEe
Confidence 446677777764333 58999999999999999999999999999999889999999999999999999999998864
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=97.80 E-value=2.1e-06 Score=93.83 Aligned_cols=82 Identities=17% Similarity=0.229 Sum_probs=70.4
Q ss_pred hhhhHHHhhhccccccC-CCcccccccHHH--------------HhhhhcCCccchhhcchHHHHHHHHHhcCCCcccC-
Q psy3476 795 EEEEEEEEGERLESRTG-PGVCYRLYSEEQ--------------YSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKF- 858 (1417)
Q Consensus 795 ~s~~~~~qR~~~agR~~-pG~CyRLyt~~~--------------~~~l~~~~~PEI~r~~L~~~vL~lk~~g~~~~~~f- 858 (1417)
.|.+...||.||+||.+ +|.||.+|+..+ +..+...+.|||.+.++..+++.++.++.++...|
T Consensus 110 ~~~~~~~qr~GR~gR~g~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~~~ 189 (212)
T 3eaq_A 110 DRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQ 189 (212)
T ss_dssp SSHHHHHHHHTTBCCCC--BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCCHHHHHHHHHHHHHHHHTTSCHHHHTTTH
T ss_pred cCHHHHHHHhcccCCCCCCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCCHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence 46788899999999996 999999999877 44566778899999999999999999998777667
Q ss_pred ----CCCCCCCccchHHHHHHH
Q psy3476 859 ----PFLEAPPAENIESSVRSL 876 (1417)
Q Consensus 859 ----~~l~~P~~~~l~~A~~~L 876 (1417)
+|+++|+.+++.+|+..|
T Consensus 190 ~~~~~l~~~~~~~~l~~al~~l 211 (212)
T 3eaq_A 190 DFAGRLFAEGRVEVVAALLALL 211 (212)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHhh
Confidence 788999999999998765
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.69 E-value=3e-06 Score=97.72 Aligned_cols=87 Identities=16% Similarity=0.205 Sum_probs=72.5
Q ss_pred hhhhHHHhhhccccccC-CCcccccccHHH--------------HhhhhcCCccchhhcchHHHHHHHHHhcCCCcccC-
Q psy3476 795 EEEEEEEEGERLESRTG-PGVCYRLYSEEQ--------------YSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKF- 858 (1417)
Q Consensus 795 ~s~~~~~qR~~~agR~~-pG~CyRLyt~~~--------------~~~l~~~~~PEI~r~~L~~~vL~lk~~g~~~~~~f- 858 (1417)
.+.+...||.||+||.+ +|.||.+|+..+ +..+...+.|||.+.++..+++.++.++.++...|
T Consensus 107 ~s~~~y~Qr~GRagR~g~~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~f~ 186 (300)
T 3i32_A 107 DRAEAYQHRSGRTGRAGRGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQ 186 (300)
T ss_dssp SSTTHHHHHHTCCC-----CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCCHHHHHHHHHHHHHHHHTTSCHHHHHTTH
T ss_pred CCHHHHHHHccCcCcCCCCceEEEEeChHHHHHHHHHHHHhCCcceEeCCCCHHHHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 45778899999999996 999999999877 45567778899999999999999999888777777
Q ss_pred ----CCCCCCCccchHHHHHHHhhccc
Q psy3476 859 ----PFLEAPPAENIESSVRSLTQHGA 881 (1417)
Q Consensus 859 ----~~l~~P~~~~l~~A~~~L~~lga 881 (1417)
+|+++|+.+.+.+|+..|.....
T Consensus 187 ~~~~~l~~~~~~e~laaal~~l~~~~~ 213 (300)
T 3i32_A 187 DFAGRLFAEGRVEVVAALLALLLGGAP 213 (300)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHhcCcHHHHHHHHHHHhcCCc
Confidence 68899999999999999976655
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00058 Score=86.16 Aligned_cols=62 Identities=23% Similarity=0.390 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHH--HH----cCCCcEEEecchHHHHHHHHHHHHH
Q psy3476 41 AQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYL--VQ----AGFQRIACTQPRRIACISLSKRVAY 102 (1417)
Q Consensus 41 ~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~i--le----~~~~~i~~tqPrr~aa~~~a~rva~ 102 (1417)
...|++++..+..+++++|+|++||||||.+-..+ +. ....+|+++.|++.||.++.+.+..
T Consensus 151 ~~~Q~~Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~ 218 (608)
T 1w36_D 151 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGK 218 (608)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTH
T ss_pred CHHHHHHHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHH
Confidence 35688888888899999999999999998654332 22 1234899999999999888776543
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00034 Score=89.07 Aligned_cols=81 Identities=9% Similarity=0.117 Sum_probs=69.4
Q ss_pred hhhhHHHhhhccccccC----CCcccccccHH--HHhhhhcCCccchhhcchHHHHHHHHHhcCCCcccCCCCCCCCccc
Q psy3476 795 EEEEEEEEGERLESRTG----PGVCYRLYSEE--QYSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAEN 868 (1417)
Q Consensus 795 ~s~~~~~qR~~~agR~~----pG~CyRLyt~~--~~~~l~~~~~PEI~r~~L~~~vL~lk~~g~~~~~~f~~l~~P~~~~ 868 (1417)
+|.++..||+|||||.+ +|.||++|+++ .+..+.....|||.+++|....++++.|+.. ++...
T Consensus 414 ~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d~~~~~~~~~~~~~~i~~~~l~p~~~~l~~~~~~----------l~~~~ 483 (677)
T 3rc3_A 414 ITTSQALQIAGRAGRFSSRFKEGEVTTMNHEDLSLLKEILKRPVDPIRAAGLHPTAEQIEMFAYH----------LPDAT 483 (677)
T ss_dssp CCHHHHHHHHTTBTCTTSSCSSEEEEESSTTHHHHHHHHHHSCCCCCCCEEECCCHHHHHHHHHH----------STTSC
T ss_pred CCHHHHHHHhcCCCCCCCCCCCEEEEEEecchHHHHHHHHhcCcchhhhccCCChHHHHHHHhcc----------CCcch
Confidence 67899999999999999 69999999988 6678999999999999999999999999842 34456
Q ss_pred hHHHHHHHhhccccccc
Q psy3476 869 IESSVRSLTQHGAIDSK 885 (1417)
Q Consensus 869 l~~A~~~L~~lgald~~ 885 (1417)
+.+.++.+..++.+|..
T Consensus 484 l~ell~~l~~~~~vd~~ 500 (677)
T 3rc3_A 484 LSNLIDIFVDFSQVDGQ 500 (677)
T ss_dssp HHHHHHHHHHHCBCCTT
T ss_pred HHHHHHHHHHhhcccch
Confidence 78888888888877743
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0063 Score=74.05 Aligned_cols=61 Identities=25% Similarity=0.328 Sum_probs=44.3
Q ss_pred cHHHHHHHHHHHh----cC-CeEEEEcCCCcchhHHHH---HHHHHcCCCcEEEecchHHHHHHHHHHH
Q psy3476 40 VAQYKQEIIDTVL----KE-RVVIIAGDTGCGKSTQIP---QYLVQAGFQRIACTQPRRIACISLSKRV 100 (1417)
Q Consensus 40 ~~~~q~~il~~i~----~~-~~~iI~a~TGsGKTt~ip---q~ile~~~~~i~~tqPrr~aa~~~a~rv 100 (1417)
+...|++++..+. ++ .+++|.|+.|||||+.+- .++...+..+|+++.|+..||..+.+++
T Consensus 26 Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 26 LTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh
Confidence 3456777777553 23 499999999999998654 3445556568999999988877776654
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0061 Score=76.28 Aligned_cols=62 Identities=19% Similarity=0.265 Sum_probs=47.3
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHH--HcCCCcEEEecchHHHHHHHHHH
Q psy3476 38 LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLV--QAGFQRIACTQPRRIACISLSKR 99 (1417)
Q Consensus 38 lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~il--e~~~~~i~~tqPrr~aa~~~a~r 99 (1417)
..+...|.+++..+..+++++|.|+.||||||.+-..+. .....+|+++.|+..||..+.+.
T Consensus 188 ~~L~~~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~ 251 (574)
T 3e1s_A 188 KGLSEEQASVLDQLAGHRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEV 251 (574)
T ss_dssp TTCCHHHHHHHHHHTTCSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhh
Confidence 345789999999999999999999999999987544332 22335788888888777666543
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0024 Score=80.64 Aligned_cols=185 Identities=15% Similarity=0.188 Sum_probs=96.8
Q ss_pred CCCcEEEEccCC-CHHHHHHHhccCceEEEeCCccccee---EEeccccccccccccCCCCChHHHHHHHHHhhCCCCCC
Q psy3476 350 AEVKIILMSATI-NIELFHTYFNRIAKIIKVPGRLYPIQ---LEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTER 425 (1417)
Q Consensus 350 ~~~qvIlmSATl-n~~~~~~~f~~~~~vi~v~gr~~pv~---v~~~~~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~ 425 (1417)
....+|++|||+ +.+.+.+.++-+...+.++ .+|+-+ +.+.+.....+.. -+...+..+.+.|.+.+. ..+
T Consensus 374 ~~~~~il~SaTL~p~~~~~~~lGl~~~~~~~~-spf~~~~~~~~~~~~~~~~~~~---r~~~~~~~~~~~i~~l~~-~~~ 448 (620)
T 4a15_A 374 KESKTIHMSGTLDPFDFYSDITGFEIPFKKIG-EIFPPENRYIAYYDGVSSKYDT---LDEKELDRMATVIEDIIL-KVK 448 (620)
T ss_dssp GGSEEEEEESSCCSHHHHHHHHCCCCCEEECC-CCSCGGGEEEEEECCC----------CHHHHHHHHHHHHHHHH-HHC
T ss_pred hCCeEEEEccCCCcHHHHHHHhCCCceeeecC-CCCCHHHeEEEEeCCCCCcCCC---CCHHHHHHHHHHHHHHHH-hCC
Confidence 345799999999 6667777664332222222 222211 1111111000000 011112334444444332 236
Q ss_pred CcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecc--hhhccCCcCC--eEE
Q psy3476 426 GDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN--IAETSITIDG--IRF 501 (1417)
Q Consensus 426 g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATn--Iae~GIdIP~--V~~ 501 (1417)
|.+|||+|+....+.+++.+.. .+.. ...+++..++..+++.|+ +...|+++|. .+..|||+|+ .+.
T Consensus 449 g~~lvlF~Sy~~l~~v~~~l~~-----~~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~~ 519 (620)
T 4a15_A 449 KNTIVYFPSYSLMDRVENRVSF-----EHMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELEM 519 (620)
T ss_dssp SCEEEEESCHHHHHHHTSSCCS-----CCEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCCE
T ss_pred CCEEEEeCCHHHHHHHHHHHHh-----cchh---ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceEE
Confidence 7899999999999988877641 1112 555666678899999998 8889999974 8999999997 446
Q ss_pred EEcCCcccceecccC-------------CCccccceeecCHhhHHhhcCcCCCCC--CCeEEEe
Q psy3476 502 VVDSGKVKEMSYDVT-------------AKMSTLQEFWISKASAEQRKGRAGRTG--PGVCYRL 550 (1417)
Q Consensus 502 VIdsG~~k~~~yD~~-------------~~~~~l~~~~ISkasa~QR~GRAGR~g--~G~cy~L 550 (1417)
||-.|+.-... |+. .++..-...| ......|-+||+=|.. .|..+.+
T Consensus 520 viI~~lPfp~~-~p~~~ar~~~~~~~~g~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~v~ll 581 (620)
T 4a15_A 520 IILAGLPFPRP-DAINRSLFDYYERKYGKGWEYSVVYP-TAIKIRQEIGRLIRSAEDTGACVIL 581 (620)
T ss_dssp EEESSCCCCCC-CHHHHHHHHHHHHHHSCHHHHHTHHH-HHHHHHHHHHTTCCSTTCCEEEEEE
T ss_pred EEEEcCCCCCC-CHHHHHHHHHHHHhhCCCchHHhHHH-HHHHHHHHhCccccCCCceEEEEEE
Confidence 66666542211 110 0000001112 2345679999999987 4776654
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.015 Score=73.89 Aligned_cols=63 Identities=29% Similarity=0.469 Sum_probs=49.9
Q ss_pred cHHHHHHHHHHHh-cCCeEEEEcCCCcchhHHHHHHHHHc--CCCcEEEecchHHHHHHHHHHHHH
Q psy3476 40 VAQYKQEIIDTVL-KERVVIIAGDTGCGKSTQIPQYLVQA--GFQRIACTQPRRIACISLSKRVAY 102 (1417)
Q Consensus 40 ~~~~q~~il~~i~-~~~~~iI~a~TGsGKTt~ipq~ile~--~~~~i~~tqPrr~aa~~~a~rva~ 102 (1417)
+...|.+++.... +.+..+|.||.|||||+.+...|... ...+|+++.|+..|+..+++|+..
T Consensus 190 LN~~Q~~AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~ 255 (646)
T 4b3f_X 190 LDTSQKEAVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLAL 255 (646)
T ss_dssp CCHHHHHHHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHh
Confidence 4677887777654 56799999999999998776655442 235899999999999999999864
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=95.15 E-value=0.029 Score=70.98 Aligned_cols=63 Identities=21% Similarity=0.347 Sum_probs=52.2
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHH---cCCCcEEEecchHHHHHHHHHHHHH
Q psy3476 40 VAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ---AGFQRIACTQPRRIACISLSKRVAY 102 (1417)
Q Consensus 40 ~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile---~~~~~i~~tqPrr~aa~~~a~rva~ 102 (1417)
+...|.+++..+..++.++|.||+|+|||+.+...+.. ....+|+++.|+..|+..+.+++.+
T Consensus 181 ln~~Q~~av~~~l~~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 181 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CCHHHHHHHHHHHTCSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHhcCCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHh
Confidence 46889999998888899999999999999876554432 2456899999999999999888754
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.027 Score=71.16 Aligned_cols=58 Identities=14% Similarity=0.047 Sum_probs=43.1
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc---CCCcEEEecchHHHHHHHHHHH
Q psy3476 43 YKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA---GFQRIACTQPRRIACISLSKRV 100 (1417)
Q Consensus 43 ~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~---~~~~i~~tqPrr~aa~~~a~rv 100 (1417)
+..++.+++.+++++++.||||+|||.....+++.. ...+|++..|++..+.|+.+.+
T Consensus 11 ~~~~v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el 71 (620)
T 4a15_A 11 AIDFLRSSLQKSYGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKEL 71 (620)
T ss_dssp HHHHHHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHH
Confidence 344566778899999999999999998755544432 2357888889988877776544
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.039 Score=71.66 Aligned_cols=63 Identities=19% Similarity=0.326 Sum_probs=52.7
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHH---HHcCCCcEEEecchHHHHHHHHHHHHH
Q psy3476 40 VAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYL---VQAGFQRIACTQPRRIACISLSKRVAY 102 (1417)
Q Consensus 40 ~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~i---le~~~~~i~~tqPrr~aa~~~a~rva~ 102 (1417)
+...|.+++..+..+++++|.||.|||||+.+...+ ......+|+++.|+..|+..+.+|+.+
T Consensus 361 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~ 426 (802)
T 2xzl_A 361 LNSSQSNAVSHVLQRPLSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRD 426 (802)
T ss_dssp CCHHHHHHHHHHTTCSEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHh
Confidence 468899999999888999999999999998765444 333457899999999999999999865
|
| >2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A* | Back alignment and structure |
|---|
Probab=94.73 E-value=0.37 Score=57.13 Aligned_cols=100 Identities=13% Similarity=0.219 Sum_probs=69.2
Q ss_pred CChhhHHHHHHHHHHHhhhhhhhhhhchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHH---
Q psy3476 1 MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQ--- 77 (1417)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile--- 77 (1417)
|+++..++|+..+.....|.+... .+....-....+.+..+|.+++..+...+.+++..+-+.|||+.+..+++-
T Consensus 127 ~t~~~~e~~~k~~~d~i~Fae~~~--~i~~~~g~~~p~~L~p~Qk~il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~ 204 (385)
T 2o0j_A 127 WTREMVEEWKKCRDDIVYFAETYC--AITHIDYGVIKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVC 204 (385)
T ss_dssp CCHHHHHHHHHHHHCHHHHHHHHC--EEECSSSCEEECCCCHHHHHHHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhHHHHHHHHhc--cCcccccccCCCCCCHHHHHHHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHH
Confidence 677888899888888877764321 000000012446779999999998877788999999999999875544332
Q ss_pred -cCCCcEEEecchHHHHHHHHHHHHH
Q psy3476 78 -AGFQRIACTQPRRIACISLSKRVAY 102 (1417)
Q Consensus 78 -~~~~~i~~tqPrr~aa~~~a~rva~ 102 (1417)
....+|+++.|++-.|..+..++..
T Consensus 205 ~~~g~~v~~vA~t~~qA~~vf~~i~~ 230 (385)
T 2o0j_A 205 FNKDKAVGILAHKGSMSAEVLDRTKQ 230 (385)
T ss_dssp SSSSCEEEEEESSHHHHHHHHHHHHH
T ss_pred hCCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 2235799999998887776655543
|
| >3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A* | Back alignment and structure |
|---|
Probab=94.42 E-value=0.39 Score=60.26 Aligned_cols=101 Identities=13% Similarity=0.211 Sum_probs=69.4
Q ss_pred CChhhHHHHHHHHHHHhhhhhhhhhhchHHHHHHhcCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHH----
Q psy3476 1 MSPALYEEWKLLLRTYLDFKQKEKFSTLMKIRETQNSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLV---- 76 (1417)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~il---- 76 (1417)
|+++..++++........|.+.- + ...........+....+|..++..+..++.+++.++-|+|||+.+..+++
T Consensus 127 ~~~~~~~~~~~~~~d~~~f~~~~-~-~~~~~~g~~~~~~l~p~Q~~i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~ 204 (592)
T 3cpe_A 127 WTREMVEEWKKCRDDIVYFAETY-C-AITHIDYGVIKVQLRDYQRDMLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVC 204 (592)
T ss_dssp CCHHHHHHHHHHHTCHHHHHHHT-C-BCCBTTTBSBBCCCCHHHHHHHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCHHHHHHhh-e-EeecCCCCcccCcCCHHHHHHHHhhccccEEEEEEcCccChHHHHHHHHHHHHH
Confidence 78888888888777777664331 1 11000011234667899999999886678899999999999997654432
Q ss_pred HcCCCcEEEecchHHHHHHHHHHHHHH
Q psy3476 77 QAGFQRIACTQPRRIACISLSKRVAYE 103 (1417)
Q Consensus 77 e~~~~~i~~tqPrr~aa~~~a~rva~e 103 (1417)
.....+|+++.|++-.|..+...+...
T Consensus 205 ~~~~~~i~~va~t~~qA~~~~~~i~~~ 231 (592)
T 3cpe_A 205 FNKDKAVGILAHKGSMSAEVLDRTKQA 231 (592)
T ss_dssp TSSSCEEEEEESSHHHHHHHHHHHHHH
T ss_pred hCCCCeEEEEECCHHHHHHHHHHHHHH
Confidence 223347999999988887777655443
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=94.33 E-value=0.06 Score=69.89 Aligned_cols=63 Identities=21% Similarity=0.349 Sum_probs=51.7
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHH---HcCCCcEEEecchHHHHHHHHHHHHH
Q psy3476 40 VAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLV---QAGFQRIACTQPRRIACISLSKRVAY 102 (1417)
Q Consensus 40 ~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~il---e~~~~~i~~tqPrr~aa~~~a~rva~ 102 (1417)
+...|.+++..+..+++++|.||+|+|||+.+...+. +....+|+++.|+..|+..+.+++..
T Consensus 357 Ln~~Q~~Av~~~l~~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 357 LNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp CCHHHHHHHHHHHTSSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHhccCCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHH
Confidence 4688999999888889999999999999987654443 22446899999999999999888754
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=93.67 E-value=0.064 Score=64.59 Aligned_cols=51 Identities=14% Similarity=0.014 Sum_probs=38.9
Q ss_pred chhhhcccccccCCCCccCCCCCcccccccccc---chhhHHHHhhhhccccch
Q psy3476 934 SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQ---IDTMLLLDLALNFGAIDS 984 (1417)
Q Consensus 934 ~~~~~~~~~~~~~~~~f~~~~gd~lt~l~~~~~---~~~~~c~~~~l~~~~~~~ 984 (1417)
.+++.+...++.....+-.+.|+|.++.+.|.- |+..||.++|+.+.++|+
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (431)
T 2v6i_A 378 DGPNEHLLLENNQEIEVWTRQGQRRVLKPRWLDGRITSDHLNLKSFKEFASGKR 431 (431)
T ss_dssp CSCGGGCCCBTTBCCEEECSSCCEEECCCSSCBGGGGSSHHHHHHHHHHHTTCC
T ss_pred eCCccceecccCCceEEecCCCCeeeecceEecccccchhHHHHHHHHHhhcCC
Confidence 333443444445557777999999999999974 689999999999988774
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.73 E-value=0.31 Score=56.34 Aligned_cols=43 Identities=12% Similarity=0.129 Sum_probs=28.6
Q ss_pred CccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCC
Q psy3476 319 SYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATIN 362 (1417)
Q Consensus 319 ~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln 362 (1417)
..-+|++||+| +....+++..++.........+-+|+.++|++
T Consensus 132 ~~~ii~lDE~d-~l~~q~~L~~l~~~~~~~~s~~~vI~i~n~~d 174 (318)
T 3te6_A 132 RKTLILIQNPE-NLLSEKILQYFEKWISSKNSKLSIICVGGHNV 174 (318)
T ss_dssp CEEEEEEECCS-SSCCTHHHHHHHHHHHCSSCCEEEEEECCSSC
T ss_pred CceEEEEecHH-HhhcchHHHHHHhcccccCCcEEEEEEecCcc
Confidence 34589999999 44466666666554333344567778899984
|
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=91.71 E-value=0.69 Score=53.63 Aligned_cols=41 Identities=24% Similarity=0.410 Sum_probs=25.3
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
...+..+|||||+| .+..+....+++.+...+.+..+|+.+
T Consensus 116 ~~~~~~vliiDe~~--~l~~~~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 116 ARGRFKVYLIDEVH--MLSRHSFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSSSEEEEEECGG--GSCHHHHHHHHHHHHSCCSSEEEEEEE
T ss_pred ccCCeEEEEEECcc--hhcHHHHHHHHHHHhcCCCceEEEEEe
Confidence 34567899999999 344555556666665444444444443
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=91.60 E-value=0.78 Score=51.82 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=14.1
Q ss_pred CCeEEEEcCCCcchhH
Q psy3476 54 ERVVIIAGDTGCGKST 69 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt 69 (1417)
...+++.||+|+|||+
T Consensus 67 ~~~vll~G~~GtGKT~ 82 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTT 82 (309)
T ss_dssp CCEEEEEECTTSSHHH
T ss_pred CceEEEECCCCCCHHH
Confidence 3479999999999996
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=91.57 E-value=0.92 Score=52.45 Aligned_cols=42 Identities=19% Similarity=0.156 Sum_probs=26.9
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
+...++.++||||+| .+..+....+++.+..-+++..+|+.+
T Consensus 104 ~~~~~~kvviIdead--~l~~~a~naLLk~lEep~~~~~~Il~t 145 (334)
T 1a5t_A 104 ARLGGAKVVWVTDAA--LLTDAAANALLKTLEEPPAETWFFLAT 145 (334)
T ss_dssp CTTSSCEEEEESCGG--GBCHHHHHHHHHHHTSCCTTEEEEEEE
T ss_pred cccCCcEEEEECchh--hcCHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 345678999999999 344455566677665544445555544
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=91.17 E-value=0.017 Score=70.16 Aligned_cols=75 Identities=17% Similarity=0.089 Sum_probs=54.9
Q ss_pred hcCChhhHH-hhcccccccchHHHHHHHhhhccccchhHHHHHHhhccchhhhHhhhhccccccchhhhcccccccc
Q psy3476 1107 LKHDPKQVQ-VAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKDL 1182 (1417)
Q Consensus 1107 ~~~~g~~l~-~~~~~~ls~~t~~iide~her~~~~d~ll~~l~~~~~~~~~lk~ilmsat~~~~~f~~yf~~~~~~~ 1182 (1417)
+++.+...+ +.+++.++.+.++||||+|++...++..+++++.... .++.++++||||.+...........|+..
T Consensus 94 ~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~-~~~~~~il~SAT~~~~~~~~~~~~~pi~~ 169 (459)
T 2z83_A 94 VMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVE-LGEAAAIFMTATPPGTTDPFPDSNAPIHD 169 (459)
T ss_dssp EEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCTTCCCSSCCCSSCEEE
T ss_pred EEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhc-cCCccEEEEEcCCCcchhhhccCCCCeEE
Confidence 344444443 6667789999999999999998888888988887653 46899999999998776444334455443
|
| >3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A* | Back alignment and structure |
|---|
Probab=91.11 E-value=0.22 Score=62.73 Aligned_cols=64 Identities=13% Similarity=0.217 Sum_probs=48.9
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHH---HHHHc-CC--CcEEEecchHHHHHHHHHHHHHHHc
Q psy3476 40 VAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQ---YLVQA-GF--QRIACTQPRRIACISLSKRVAYETL 105 (1417)
Q Consensus 40 ~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq---~ile~-~~--~~i~~tqPrr~aa~~~a~rva~e~~ 105 (1417)
+...|.+++. ..+..++|.|+.|||||+.+.. ++++. +. .+|+++-+++-||..+.+|+....+
T Consensus 10 Ln~~Q~~av~--~~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 10 LNDKQREAVA--APRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp CCHHHHHHHT--CCSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHh--CCCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 3466777776 3467789999999999987654 34444 32 4799999999999999999987754
|
| >2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=89.99 E-value=0.32 Score=61.40 Aligned_cols=55 Identities=20% Similarity=0.289 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHhc--CCeEEEEcCCCcchhHHHHHHHHHcCCCcEEEecchHHHHHHH
Q psy3476 41 AQYKQEIIDTVLK--ERVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISL 96 (1417)
Q Consensus 41 ~~~q~~il~~i~~--~~~~iI~a~TGsGKTt~ipq~ile~~~~~i~~tqPrr~aa~~~ 96 (1417)
...|+++++.+.. ..+.+|+|+-|.|||+.+-..+-.. ..+++||.|+..++..+
T Consensus 177 T~dQ~~al~~~~~~~~~~~vlta~RGRGKSa~lG~~~a~~-~~~~~vtAP~~~a~~~l 233 (671)
T 2zpa_A 177 QPEQQQLLKQLMTMPPGVAAVTAARGRGKSALAGQLISRI-AGRAIVTAPAKASTDVL 233 (671)
T ss_dssp CHHHHHHHHHHTTCCSEEEEEEECTTSSHHHHHHHHHHHS-SSCEEEECSSCCSCHHH
T ss_pred CHHHHHHHHHHHHhhhCeEEEecCCCCCHHHHHHHHHHHH-HhCcEEECCCHHHHHHH
Confidence 4578899988876 5688999999999998766555443 34578888886655444
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=89.88 E-value=0.061 Score=68.43 Aligned_cols=103 Identities=15% Similarity=0.075 Sum_probs=75.3
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc---CC----CcEEEecchHHHHHHHHHHHHHHHccccCCe
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA---GF----QRIACTQPRRIACISLSKRVAYETLSQYSNL 111 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~---~~----~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~ 111 (1417)
..+.+|.++++.+.+++++||++|||||||+++..++++. .. .+++++.|++.++.+.++.+.+.. ...|-.
T Consensus 13 ~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~-~~~~~~ 91 (696)
T 2ykg_A 13 KPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYF-ERHGYR 91 (696)
T ss_dssp CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHT-TTTTCC
T ss_pred CccHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHh-ccCCce
Confidence 4578999999999999999999999999999887777642 11 689999999998888877665543 233555
Q ss_pred EEEEEeecccc------cCCccEEEEccchhHHhhcC
Q psy3476 112 VGYQIRFEKHR------REKTKIVFITEGLLLRQDSG 142 (1417)
Q Consensus 112 vGy~ir~e~~~------~~~t~I~~~T~g~llr~l~~ 142 (1417)
|+......... ...++|+|+|+|+|++.+..
T Consensus 92 v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~ 128 (696)
T 2ykg_A 92 VTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK 128 (696)
T ss_dssp EEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHT
T ss_pred EEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhc
Confidence 55433322111 13578999999998876543
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=89.73 E-value=1 Score=51.72 Aligned_cols=53 Identities=13% Similarity=0.218 Sum_probs=34.4
Q ss_pred CccEEEEccchhHHhhcCCCCCCCCCCCcchhh--HHhhhhhhHHHHHHHHhhhh
Q psy3476 125 KTKIVFITEGLLLRQDSGLITDIPGPDASLSSR--ERALRHGEIKLLQAIKRKKA 177 (1417)
Q Consensus 125 ~t~I~~~T~g~llr~l~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 177 (1417)
+..|+++-+|..++.+..+..++|..|.++-+. +...+.|.-.|.+.|+..|.
T Consensus 100 ~~pilVGGTglYi~all~gl~~~p~~~~~~R~~l~~~~~~~g~~~l~~~L~~~DP 154 (316)
T 3foz_A 100 RIPLLVGGTMLYFKALLEGLSPLPSADPEVRARIEQQAAEQGWESLHRQLQEVDP 154 (316)
T ss_dssp CEEEEEESCHHHHHHHHSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred CcEEEEcCcHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHhcCHHHHHHHHHHhCH
Confidence 456889999999999988866666544433221 12345666667777775553
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=89.57 E-value=0.026 Score=68.47 Aligned_cols=74 Identities=18% Similarity=0.105 Sum_probs=52.8
Q ss_pred hcCChhhHH-hhcccccccchHHHHHHHhhhccccchhHHHHHHhhccchhhhHhhhhccccccchhhhccccccc
Q psy3476 1107 LKHDPKQVQ-VAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKD 1181 (1417)
Q Consensus 1107 ~~~~g~~l~-~~~~~~ls~~t~~iide~her~~~~d~ll~~l~~~~~~~~~lk~ilmsat~~~~~f~~yf~~~~~~ 1181 (1417)
+++.|.+.+ +.+++.++.+.++||||+|+.....+.++.++... ...++.++++||||.+...+..++++.++.
T Consensus 92 ~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~-~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~ 166 (451)
T 2jlq_A 92 LMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTR-VEMGEAAAIFMTATPPGSTDPFPQSNSPIE 166 (451)
T ss_dssp EEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHH-HHTTSCEEEEECSSCTTCCCSSCCCSSCEE
T ss_pred EEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHHh-hcCCCceEEEEccCCCccchhhhcCCCceE
Confidence 445555444 66778899999999999998855555555555432 245689999999999888777776555544
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=89.10 E-value=0.22 Score=53.94 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=27.0
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHH
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~i 71 (1417)
|-..-+..+++.+..++++.|.||.||||||.+
T Consensus 7 pk~~g~~~~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 7 PKTLGQKHYVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp CCSHHHHHHHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred cCCHhHHHHHHhccCCCEEEEECCCCCCHHHHH
Confidence 333446678888999999999999999999954
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=88.07 E-value=0.38 Score=50.10 Aligned_cols=19 Identities=21% Similarity=0.431 Sum_probs=16.5
Q ss_pred cCCeEEEEcCCCcchhHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~i 71 (1417)
.++.++|.||+||||||.+
T Consensus 37 ~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp GCCEEEECCSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4789999999999999843
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=87.80 E-value=0.23 Score=52.05 Aligned_cols=19 Identities=16% Similarity=0.450 Sum_probs=16.6
Q ss_pred cCCeEEEEcCCCcchhHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~i 71 (1417)
.++.++|+||+||||||.+
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5778999999999999854
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=87.28 E-value=0.38 Score=48.51 Aligned_cols=25 Identities=20% Similarity=0.324 Sum_probs=19.2
Q ss_pred HHHHHHHhcCCeEEEEcCCCcchhH
Q psy3476 45 QEIIDTVLKERVVIIAGDTGCGKST 69 (1417)
Q Consensus 45 ~~il~~i~~~~~~iI~a~TGsGKTt 69 (1417)
+.+-.....+..++|.||+|||||+
T Consensus 15 ~~~~~~a~~~~~vll~G~~GtGKt~ 39 (145)
T 3n70_A 15 RRLQQLSETDIAVWLYGAPGTGRMT 39 (145)
T ss_dssp HHHHHHTTCCSCEEEESSTTSSHHH
T ss_pred HHHHHHhCCCCCEEEECCCCCCHHH
Confidence 3344444677899999999999996
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=87.01 E-value=0.41 Score=48.23 Aligned_cols=26 Identities=19% Similarity=0.353 Sum_probs=19.9
Q ss_pred HHHHHHHHhcCCeEEEEcCCCcchhH
Q psy3476 44 KQEIIDTVLKERVVIIAGDTGCGKST 69 (1417)
Q Consensus 44 q~~il~~i~~~~~~iI~a~TGsGKTt 69 (1417)
++.+......+..++|.||+|+|||+
T Consensus 17 ~~~~~~~~~~~~~vll~G~~GtGKt~ 42 (143)
T 3co5_A 17 NREVEAAAKRTSPVFLTGEAGSPFET 42 (143)
T ss_dssp HHHHHHHHTCSSCEEEEEETTCCHHH
T ss_pred HHHHHHHhCCCCcEEEECCCCccHHH
Confidence 33444445677889999999999996
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=86.82 E-value=0.27 Score=51.98 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=17.4
Q ss_pred HhcCCeEEEEcCCCcchhHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~i 71 (1417)
+..+.++.|.||+||||||++
T Consensus 4 m~~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 4 MNKANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp -CCCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECcCCCCHHHHH
Confidence 346789999999999999854
|
| >3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A* | Back alignment and structure |
|---|
Probab=86.78 E-value=0.51 Score=64.25 Aligned_cols=67 Identities=13% Similarity=0.191 Sum_probs=51.3
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHH---HcCC-----CcEEEecchHHHHHHHHHHHHHHHcc
Q psy3476 38 LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLV---QAGF-----QRIACTQPRRIACISLSKRVAYETLS 106 (1417)
Q Consensus 38 lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~il---e~~~-----~~i~~tqPrr~aa~~~a~rva~e~~~ 106 (1417)
......|++++.. .+++++|.|.-|||||+.+.+-+. ..+. .+|+|+.+++.||..+.+|+...++.
T Consensus 9 ~~~t~eQ~~~i~~--~~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~~ 83 (1232)
T 3u4q_A 9 STWTDDQWNAIVS--TGQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALEK 83 (1232)
T ss_dssp -CCCHHHHHHHHC--CSSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhC--CCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHHH
Confidence 3456778888775 377999999999999998655433 3322 48999999999999999999876543
|
| >1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=86.66 E-value=0.54 Score=59.75 Aligned_cols=64 Identities=19% Similarity=0.283 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHH---HHHHc-CC--CcEEEecchHHHHHHHHHHHHHHHcc
Q psy3476 41 AQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQ---YLVQA-GF--QRIACTQPRRIACISLSKRVAYETLS 106 (1417)
Q Consensus 41 ~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq---~ile~-~~--~~i~~tqPrr~aa~~~a~rva~e~~~ 106 (1417)
...|.+++.. .+..++|.|+.|||||+.+.. ++++. +. .+|+++-.++-||..+.+|+....+.
T Consensus 4 ~~~Q~~av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~ 73 (673)
T 1uaa_A 4 NPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGR 73 (673)
T ss_dssp CHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCT
T ss_pred CHHHHHHHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCc
Confidence 4567788774 367889999999999987654 33433 43 57999888999999999999876543
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=86.42 E-value=0.48 Score=51.93 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=20.7
Q ss_pred cCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
.+..++++|++|+||||.+.+.+..
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r 35 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHR 35 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHH
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHH
Confidence 4678999999999999977766654
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=86.40 E-value=1.7 Score=49.44 Aligned_cols=39 Identities=15% Similarity=0.166 Sum_probs=22.3
Q ss_pred CCCccEEEEecCcccccC-cchHHHHHHHHhccCCCCcEEEE
Q psy3476 317 LSSYDVLVLDEIHERHLH-GDFLLGVIKCLLHSTAEVKIILM 357 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~-~d~ll~llk~l~~~r~~~qvIlm 357 (1417)
..+.+++||||+| .+. .+....+++.+.....+.++|+.
T Consensus 103 ~~~~~vliiDEi~--~l~~~~~~~~L~~~le~~~~~~~iI~~ 142 (324)
T 3u61_B 103 DGRQKVIVIDEFD--RSGLAESQRHLRSFMEAYSSNCSIIIT 142 (324)
T ss_dssp SSCEEEEEEESCC--CGGGHHHHHHHHHHHHHHGGGCEEEEE
T ss_pred CCCCeEEEEECCc--ccCcHHHHHHHHHHHHhCCCCcEEEEE
Confidence 3467899999999 333 33444444444433345555553
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=86.07 E-value=0.32 Score=51.48 Aligned_cols=21 Identities=29% Similarity=0.476 Sum_probs=17.5
Q ss_pred HhcCCeEEEEcCCCcchhHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~i 71 (1417)
+..+.+++|+|++||||||++
T Consensus 3 i~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 3 NEKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp -CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHH
Confidence 456889999999999999854
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=85.91 E-value=0.33 Score=51.97 Aligned_cols=22 Identities=36% Similarity=0.591 Sum_probs=17.6
Q ss_pred HHhcCCeEEEEcCCCcchhHHH
Q psy3476 50 TVLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt~i 71 (1417)
.+..++++.|.||+||||||.+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 6788999999999999999954
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=85.75 E-value=0.41 Score=58.87 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=20.9
Q ss_pred HHHHHhcCCeEEEEcCCCcchhHHH
Q psy3476 47 IIDTVLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 47 il~~i~~~~~~iI~a~TGsGKTt~i 71 (1417)
+--.+..+.+++|+|||||||||.+
T Consensus 253 l~~~v~~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 253 LWLAIEHKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp HHHHHHTTCCEEEEESTTSSHHHHH
T ss_pred HHHHHhCCCEEEEECCCCCCHHHHH
Confidence 4445678899999999999999965
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=85.67 E-value=0.32 Score=54.53 Aligned_cols=21 Identities=43% Similarity=0.651 Sum_probs=18.7
Q ss_pred HhcCCeEEEEcCCCcchhHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~i 71 (1417)
+..+..+.|+|||||||||.+
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHH
Confidence 677889999999999999954
|
| >1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B* | Back alignment and structure |
|---|
Probab=85.61 E-value=0.99 Score=57.94 Aligned_cols=65 Identities=22% Similarity=0.265 Sum_probs=48.9
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHH---HHHH-cCC--CcEEEecchHHHHHHHHHHHHHHHcc
Q psy3476 40 VAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQ---YLVQ-AGF--QRIACTQPRRIACISLSKRVAYETLS 106 (1417)
Q Consensus 40 ~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq---~ile-~~~--~~i~~tqPrr~aa~~~a~rva~e~~~ 106 (1417)
+...|.+++.. .+..++|.|..|||||+.+.. ++++ .+. .+|+++-.++-||..+.+|+....+.
T Consensus 12 Ln~~Q~~av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~ 82 (724)
T 1pjr_A 12 LNKEQQEAVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGG 82 (724)
T ss_dssp SCHHHHHHHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGG
T ss_pred CCHHHHHHHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhcc
Confidence 34667777765 356789999999999986543 3444 343 57999999999999999999887654
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=85.48 E-value=0.32 Score=51.87 Aligned_cols=19 Identities=42% Similarity=0.735 Sum_probs=15.4
Q ss_pred cCCeEEEEcCCCcchhHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~i 71 (1417)
.++.++|+||+||||||.+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5678999999999999854
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=85.10 E-value=0.37 Score=52.27 Aligned_cols=22 Identities=32% Similarity=0.502 Sum_probs=17.3
Q ss_pred HHhcCCeEEEEcCCCcchhHHH
Q psy3476 50 TVLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt~i 71 (1417)
.+..++.+.|.||+||||||.+
T Consensus 19 ~i~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 19 SMNNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp ---CCCCEEEECSTTSSHHHHH
T ss_pred ecCCCCEEEEECCCCCCHHHHH
Confidence 3567899999999999999854
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=84.99 E-value=0.69 Score=48.89 Aligned_cols=25 Identities=20% Similarity=0.430 Sum_probs=19.9
Q ss_pred cCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
.+.+.++.|+.||||||.+.+.+..
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~ 26 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEI 26 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHH
Confidence 3678899999999999977665543
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=84.87 E-value=0.92 Score=46.45 Aligned_cols=28 Identities=18% Similarity=0.462 Sum_probs=20.4
Q ss_pred HHHHHHHHhc--CCeEEEEcCCCcchhHHH
Q psy3476 44 KQEIIDTVLK--ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 44 q~~il~~i~~--~~~~iI~a~TGsGKTt~i 71 (1417)
.+++.+.+.. ...++|.||+|+|||+.+
T Consensus 31 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 31 IRRTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 4455555554 368999999999999743
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=84.85 E-value=0.66 Score=49.55 Aligned_cols=37 Identities=27% Similarity=0.364 Sum_probs=26.7
Q ss_pred cCCeEEEEcCCCcchhHHHHHHHHHc--CCCcEEEecch
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQYLVQA--GFQRIACTQPR 89 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~ile~--~~~~i~~tqPr 89 (1417)
.++..++.|++||||||.+.+.+... ...++++.+|.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~ 45 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPE 45 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEec
Confidence 46789999999999999877766543 22456665554
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=84.64 E-value=0.62 Score=54.70 Aligned_cols=28 Identities=39% Similarity=0.623 Sum_probs=22.3
Q ss_pred HHHHHHhcCCeEEEEcCCCcchhHHHHH
Q psy3476 46 EIIDTVLKERVVIIAGDTGCGKSTQIPQ 73 (1417)
Q Consensus 46 ~il~~i~~~~~~iI~a~TGsGKTt~ipq 73 (1417)
.+--.+..+.+++|+|||||||||.+-.
T Consensus 167 ~l~~~i~~G~~i~ivG~sGsGKSTll~~ 194 (361)
T 2gza_A 167 FLRRAVQLERVIVVAGETGSGKTTLMKA 194 (361)
T ss_dssp HHHHHHHTTCCEEEEESSSSCHHHHHHH
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHHHH
Confidence 3444667899999999999999996543
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=84.57 E-value=0.29 Score=51.23 Aligned_cols=22 Identities=32% Similarity=0.557 Sum_probs=18.1
Q ss_pred HHhcCCeEEEEcCCCcchhHHH
Q psy3476 50 TVLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt~i 71 (1417)
.+..+.+++|.|+.||||||.+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIA 26 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHH
Confidence 3567889999999999999854
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=84.43 E-value=0.28 Score=50.98 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=18.5
Q ss_pred hcCCeEEEEcCCCcchhHHHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQIPQ 73 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ipq 73 (1417)
..+.++.|.||+||||||.+-.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 4678999999999999996543
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=84.12 E-value=0.55 Score=50.39 Aligned_cols=20 Identities=25% Similarity=0.527 Sum_probs=17.1
Q ss_pred hcCCeEEEEcCCCcchhHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~i 71 (1417)
..+.+++|+||+||||||++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHH
Confidence 35789999999999999854
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=84.03 E-value=2.3 Score=48.66 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=27.2
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
+...+++++||||+| .+..+-...+++.+..-++...+|+.+
T Consensus 78 p~~~~~kvviIdead--~lt~~a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 78 PELYTRKYVIVHDCE--RMTQQAANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp CSSSSSEEEEETTGG--GBCHHHHHHTHHHHHSCCTTEEEEEEE
T ss_pred cccCCceEEEeccHH--HhCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 445678999999999 344455566676665544455555543
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=83.75 E-value=0.77 Score=47.04 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=19.1
Q ss_pred HHHHHHHhc--CCeEEEEcCCCcchhHH
Q psy3476 45 QEIIDTVLK--ERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 45 ~~il~~i~~--~~~~iI~a~TGsGKTt~ 70 (1417)
+++++.+.. ...++|.||+|+|||+.
T Consensus 32 ~~l~~~l~~~~~~~vll~G~~G~GKT~l 59 (187)
T 2p65_A 32 RRAIQILSRRTKNNPILLGDPGVGKTAI 59 (187)
T ss_dssp HHHHHHHTSSSSCEEEEESCGGGCHHHH
T ss_pred HHHHHHHhCCCCCceEEECCCCCCHHHH
Confidence 344555544 56889999999999974
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=83.72 E-value=0.49 Score=51.64 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=18.7
Q ss_pred HHhcCCeEEEEcCCCcchhHHHH
Q psy3476 50 TVLKERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt~ip 72 (1417)
.+.+.++++|.||+||||+||.-
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~ 47 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCE 47 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHH
Confidence 34566789999999999999653
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=83.45 E-value=0.75 Score=48.77 Aligned_cols=21 Identities=24% Similarity=0.241 Sum_probs=16.9
Q ss_pred HhcCCeEEEEcCCCcchhHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~i 71 (1417)
+..+++++|+|++||||||+.
T Consensus 22 ~~~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 22 SNAMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred cCCCCEEEEEcCCCCCHHHHH
Confidence 456789999999999999854
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=83.41 E-value=0.58 Score=54.28 Aligned_cols=24 Identities=42% Similarity=0.612 Sum_probs=20.0
Q ss_pred HHHHhcCCeEEEEcCCCcchhHHH
Q psy3476 48 IDTVLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 48 l~~i~~~~~~iI~a~TGsGKTt~i 71 (1417)
--.+..++++.|+|||||||||.+
T Consensus 165 ~~~i~~g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 165 KDGIAIGKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHHHHHTCCEEEEESTTSCHHHHH
T ss_pred hhhccCCCEEEEECCCCCCHHHHH
Confidence 345678999999999999999953
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=83.31 E-value=0.16 Score=67.62 Aligned_cols=85 Identities=12% Similarity=0.131 Sum_probs=57.5
Q ss_pred hhhhHHHhhhccccccC---CCcccccccH-----HHHhhhhcCCccchhhc------chHHHHHHHHHhcCCCcccCCC
Q psy3476 795 EEEEEEEEGERLESRTG---PGVCYRLYSE-----EQYSLLAEYSTPEIRRV------SIDSLLLSLVCMGLGDVRKFPF 860 (1417)
Q Consensus 795 ~s~~~~~qR~~~agR~~---pG~CyRLyt~-----~~~~~l~~~~~PEI~r~------~L~~~vL~lk~~g~~~~~~f~~ 860 (1417)
.|.++..||.|||||.+ +|+||.+++. ..+..+. ...|+.+++ ++..-+|++...++.++..+.|
T Consensus 462 ~s~~~y~Qr~GRAGR~G~~~~G~vi~l~~~~~~~~~~~~~~i-~~~~~~l~s~~~~~ynm~l~ll~~~~~~~~~~l~~sf 540 (997)
T 4a4z_A 462 LTPGEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVT-MGVPTRLQSQFRLTYNMILNLLRIEALRVEEMIKYSF 540 (997)
T ss_dssp CCHHHHHHHHGGGCCTTTCSSEEEEEECCSSCCCHHHHHHHH-HSCCCCCCCCCCCCHHHHHHHHHHCTTHHHHHHHTSH
T ss_pred CCHHHHhHHhcccccCCCCcceEEEEecCCCcchHHHHHHHh-cCCCcccccccccchHHHHHHHhhccccHHHHHHHHH
Confidence 37889999999999987 9999999943 2333332 234666666 4555556667777777777888
Q ss_pred CCCCCccchHHHHHHHhhcc
Q psy3476 861 LEAPPAENIESSVRSLTQHG 880 (1417)
Q Consensus 861 l~~P~~~~l~~A~~~L~~lg 880 (1417)
.+.|....+......|..++
T Consensus 541 ~~~~~~~~~~~~~~~l~~l~ 560 (997)
T 4a4z_A 541 SENAKETLQPEHEKQIKVLQ 560 (997)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHH
Confidence 77666555555555554443
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=83.05 E-value=0.84 Score=54.71 Aligned_cols=28 Identities=25% Similarity=0.547 Sum_probs=20.0
Q ss_pred HHHHHHHH--hcCCeEEEEcCCCcchhHHH
Q psy3476 44 KQEIIDTV--LKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 44 q~~il~~i--~~~~~~iI~a~TGsGKTt~i 71 (1417)
+.+++..+ ..+..++|+|||||||||.+
T Consensus 155 ~~~~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 155 NHDNFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp HHHHHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 33444433 34568999999999999954
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=82.67 E-value=0.69 Score=49.71 Aligned_cols=20 Identities=20% Similarity=0.494 Sum_probs=17.4
Q ss_pred cCCeEEEEcCCCcchhHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ip 72 (1417)
.++.++|+||+||||||++-
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~ 37 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKN 37 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHH
Confidence 67899999999999998543
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=82.49 E-value=0.71 Score=55.55 Aligned_cols=45 Identities=29% Similarity=0.507 Sum_probs=34.9
Q ss_pred cCCeEEEEcCCCcchhHHHHHHHHHcCCCcEEEecchHHHHHHHHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRV 100 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~ile~~~~~i~~tqPrr~aa~~~a~rv 100 (1417)
..++++|.|+.|||||+.+...+. ..++++..|++.++..+.+++
T Consensus 160 ~~~v~~I~G~aGsGKTt~I~~~~~---~~~~lVlTpT~~aa~~l~~kl 204 (446)
T 3vkw_A 160 SAKVVLVDGVPGCGKTKEILSRVN---FEEDLILVPGRQAAEMIRRRA 204 (446)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHCC---TTTCEEEESCHHHHHHHHHHH
T ss_pred cccEEEEEcCCCCCHHHHHHHHhc---cCCeEEEeCCHHHHHHHHHHh
Confidence 456899999999999998766542 256788889988887776665
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=82.19 E-value=2.6 Score=50.70 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=26.1
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHCC
Q psy3476 709 SKKWCKRRGIEEQRFYEVTKLRSQFKQVLGDSG 741 (1417)
Q Consensus 709 ~~~WC~~~~L~~~~L~ei~~lr~QL~~iL~~~g 741 (1417)
.++-++--|.+.+.+.++.+-..|+++.+++++
T Consensus 398 ~~ria~gsg~~~~~v~~ll~~~~~~~~~~~~~~ 430 (443)
T 3dm5_A 398 IKRIARGSGTSTKDVKELLDQYRQMKKLFKSMN 430 (443)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 446777888888888888888888888888764
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=82.17 E-value=1.2 Score=47.34 Aligned_cols=40 Identities=25% Similarity=0.463 Sum_probs=24.7
Q ss_pred CCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEcc
Q psy3476 318 SSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSA 359 (1417)
Q Consensus 318 ~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSA 359 (1417)
.+..+|||||+| .++.+....+++.+........+|+.|.
T Consensus 125 ~~~~vlviDe~~--~l~~~~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 125 GRFKVYLIDEVH--MLSRHSFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp SSSEEEEEETGG--GSCHHHHHHHHHHHHSCCTTEEEEEEES
T ss_pred CCceEEEEECcc--cccHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 345789999999 3455555556665554444555555543
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=82.02 E-value=1.2 Score=46.90 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=14.6
Q ss_pred CeEEEEcCCCcchhHH
Q psy3476 55 RVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ 70 (1417)
..++|.||+|+|||+.
T Consensus 55 ~~~~l~G~~GtGKT~l 70 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYL 70 (202)
T ss_dssp CEEEEECSTTSSHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 7899999999999974
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=81.90 E-value=0.66 Score=54.44 Aligned_cols=20 Identities=40% Similarity=0.745 Sum_probs=17.1
Q ss_pred hcCCeEEEEcCCCcchhHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~i 71 (1417)
..+..++|+|||||||||.+
T Consensus 121 ~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45669999999999999954
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=81.32 E-value=1 Score=46.82 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=15.5
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
.++++++|++||||||+.
T Consensus 5 ~~~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVG 22 (185)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 568899999999999843
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=81.29 E-value=0.67 Score=53.89 Aligned_cols=17 Identities=47% Similarity=0.882 Sum_probs=14.9
Q ss_pred cCCeEEEEcCCCcchhH
Q psy3476 53 KERVVIIAGDTGCGKST 69 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt 69 (1417)
.+++++|+||||||||+
T Consensus 39 ~~~lIvI~GPTgsGKTt 55 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSR 55 (339)
T ss_dssp CCEEEEEECSTTSSHHH
T ss_pred CCceEEEECCCCCCHHH
Confidence 44689999999999997
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=81.26 E-value=0.85 Score=46.26 Aligned_cols=19 Identities=37% Similarity=0.585 Sum_probs=15.6
Q ss_pred CeEEEEcCCCcchhHHHHH
Q psy3476 55 RVVIIAGDTGCGKSTQIPQ 73 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ipq 73 (1417)
.+++|+|++||||||+.-.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~ 20 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKL 20 (179)
T ss_dssp CEEEEECCTTSCHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3689999999999996543
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=81.26 E-value=0.41 Score=52.06 Aligned_cols=22 Identities=23% Similarity=0.502 Sum_probs=14.6
Q ss_pred HHhcCCeEEEEcCCCcchhHHH
Q psy3476 50 TVLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 50 ~i~~~~~~iI~a~TGsGKTt~i 71 (1417)
.+..+.++.|.||+||||||.+
T Consensus 23 ~v~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 23 LKSVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CEECCCEEEEECSCC----CHH
T ss_pred ccCCCCEEEEECCCCCCHHHHH
Confidence 3467889999999999999854
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=81.04 E-value=0.68 Score=48.09 Aligned_cols=18 Identities=33% Similarity=0.680 Sum_probs=15.6
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
+..++|+|+.||||||+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 568899999999999853
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=80.88 E-value=0.61 Score=54.99 Aligned_cols=21 Identities=43% Similarity=0.651 Sum_probs=18.2
Q ss_pred HhcCCeEEEEcCCCcchhHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~i 71 (1417)
+..+.+++|+|||||||||.+
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHH
Confidence 456789999999999999964
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=80.78 E-value=4.3 Score=52.26 Aligned_cols=27 Identities=30% Similarity=0.490 Sum_probs=18.1
Q ss_pred CccEEEEecCcccccCcchHHHHHHHHhc
Q psy3476 319 SYDVLVLDEIHERHLHGDFLLGVIKCLLH 347 (1417)
Q Consensus 319 ~~~~VIlDEaHER~l~~d~ll~llk~l~~ 347 (1417)
.+++|+|||+| ....++...+++.+..
T Consensus 579 ~~~vl~lDEi~--~~~~~~~~~Ll~~le~ 605 (758)
T 3pxi_A 579 PYSVVLLDAIE--KAHPDVFNILLQVLED 605 (758)
T ss_dssp SSSEEEEECGG--GSCHHHHHHHHHHHHH
T ss_pred CCeEEEEeCcc--ccCHHHHHHHHHHhcc
Confidence 35689999998 3455666666665544
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=80.62 E-value=0.73 Score=50.01 Aligned_cols=27 Identities=30% Similarity=0.551 Sum_probs=21.6
Q ss_pred HhcCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
+..+.+++|.|++|+|||+.+.|++.+
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 345789999999999999877666543
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=80.43 E-value=0.76 Score=52.90 Aligned_cols=18 Identities=39% Similarity=0.617 Sum_probs=15.1
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
.++++|+||||||||+..
T Consensus 3 ~~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp CEEEEEECCTTSCHHHHH
T ss_pred CcEEEEECCCcCCHHHHH
Confidence 457899999999999743
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=80.43 E-value=1.6 Score=45.71 Aligned_cols=27 Identities=22% Similarity=0.399 Sum_probs=19.5
Q ss_pred HHHHHHHHhcC--CeEEEEcCCCcchhHH
Q psy3476 44 KQEIIDTVLKE--RVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 44 q~~il~~i~~~--~~~iI~a~TGsGKTt~ 70 (1417)
.+++.+.+..+ ..++|.||+|+|||+.
T Consensus 26 ~~~l~~~l~~~~~~~~ll~G~~G~GKT~l 54 (226)
T 2chg_A 26 IQRLKGYVERKNIPHLLFSGPPGTGKTAT 54 (226)
T ss_dssp HHHHHHHHHTTCCCCEEEECSTTSSHHHH
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHH
Confidence 34455555544 3599999999999974
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=80.42 E-value=0.74 Score=49.91 Aligned_cols=26 Identities=31% Similarity=0.570 Sum_probs=21.1
Q ss_pred HhcCCeEEEEcCCCcchhHHHHHHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~ipq~il 76 (1417)
+..+.+++|.|++||||||.+.+++.
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~ 45 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLW 45 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35688999999999999997665544
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=80.27 E-value=0.76 Score=50.08 Aligned_cols=21 Identities=29% Similarity=0.542 Sum_probs=17.1
Q ss_pred HhcCCeEEEEcCCCcchhHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~i 71 (1417)
+..++.++|+||.||||||.+
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 457889999999999999854
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1417 | ||||
| d1yksa2 | 299 | c.37.1.14 (A:325-623) YFV helicase domain {Yellow | 4e-36 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 3e-25 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 6e-10 | |
| d1a1va1 | 136 | c.37.1.14 (A:190-325) HCV helicase domain {Human h | 9e-09 | |
| d1a1va1 | 136 | c.37.1.14 (A:190-325) HCV helicase domain {Human h | 3e-07 | |
| d1a1va1 | 136 | c.37.1.14 (A:190-325) HCV helicase domain {Human h | 3e-07 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 2e-06 | |
| d1yksa1 | 140 | c.37.1.14 (A:185-324) YFV helicase domain {Yellow | 7e-04 | |
| d1yksa1 | 140 | c.37.1.14 (A:185-324) YFV helicase domain {Yellow | 9e-04 | |
| d1c4oa2 | 174 | c.37.1.19 (A:410-583) Nucleotide excision repair e | 0.004 |
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 137 bits (346), Expect = 4e-36
Identities = 39/274 (14%), Positives = 82/274 (29%), Gaps = 27/274 (9%)
Query: 381 GRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISS 440
G I ++ + + I ++ F+ I +
Sbjct: 1 GTSDEFPHSNGEIEDVQTDIPSEPWNTGHDWI---------LADKRPTAWFLPSIRAANV 51
Query: 441 IVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIR 500
+ + ++ G V+ L+ E + P I++T+IAE + +
Sbjct: 52 MAASLRK-----AGKSVVVLNRKTFEREYPTIKQKKP----DFILATDIAEMGANLC-VE 101
Query: 501 FVVDSG-KVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG----VCYRLYSEEQ 555
V+D K + D K++ IS +SA QR+GR GR Y + E
Sbjct: 102 RVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSEN 161
Query: 556 YSLLAEYSTPEIRRVSIDSLLLSLVCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAID 615
+ + + +++ + + P E + +
Sbjct: 162 NAHHVCWLEASMLLDNMEVRGGM---VAPLYGVEGTKTPVSPGEMRLRDDQRKVFRELVR 218
Query: 616 SKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQI 649
+ + L ++ + K G H+I
Sbjct: 219 NCDLPVWLSWQVAKAGLKTNDRKWCFEGPEEHEI 252
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 105 bits (263), Expect = 3e-25
Identities = 44/250 (17%), Positives = 79/250 (31%), Gaps = 41/250 (16%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTY 369
+ + + +Y+++++DE H G I + E I M+AT
Sbjct: 91 RLLSPIRVPNYNLIIMDEAHFTDPASIAARGYISTRVEM-GEAAGIFMTATP-------- 141
Query: 370 FNRIAKIIKVPGRLYPIQLEYHPIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVL 429
P PI E I E + D K G +
Sbjct: 142 ---PGSRDPFPQSNAPIMDEEREIPERSWN----------SGHEWVTDFK------GKTV 182
Query: 430 IFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI 489
F+ I + I ++ G V+ L E + +V+T+I
Sbjct: 183 WFVPSIKAGNDIAACLRK-----NGKKVIQLSRKTFDSEYIKTRTND----WDFVVTTDI 233
Query: 490 AETSITIDGIRFVVDSGKVKE--MSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVC 547
+E V+D + + + D ++ ++ +SA QR+GR GR
Sbjct: 234 SEMGANFK-AERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNEN 292
Query: 548 YR-LYSEEQY 556
+ +Y E
Sbjct: 293 DQYIYMGEPL 302
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 59.9 bits (144), Expect = 6e-10
Identities = 11/96 (11%), Positives = 30/96 (31%), Gaps = 10/96 (10%)
Query: 47 IIDTVLKE-RVVIIAGDTGCGKSTQIPQYLVQAGFQ---RIACTQPRRIACISLSKRVAY 102
I D + ++ R+ I+ G GK+ + +V+ + R P R+ + + +
Sbjct: 1 IEDDIFRKKRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEALRG 60
Query: 103 ETLSQYSNLVGYQIRFEKHRREKTKIVFITEGLLLR 138
+ + + + +
Sbjct: 61 LPIRYQT------PAIRAEHTGREIVDLMCHATFTM 90
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 53.3 bits (127), Expect = 9e-09
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 55 RVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGY 114
+V + TG GKST++P G++ + P A + ++ + G
Sbjct: 9 QVAHLHAPTGSGKSTKVPAAYAAQGYK-VLVLNPSVAATLGFGAYMSKAHGVDPNIRTGV 67
Query: 115 QIRFEKHR 122
+
Sbjct: 68 RTITTGSP 75
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 48.7 bits (115), Expect = 3e-07
Identities = 9/45 (20%), Positives = 19/45 (42%)
Query: 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSAT 360
+YD+++ DE H +G + + ++L +AT
Sbjct: 91 SGGAYDIIICDECHSTDATSILGIGTVLDQAETAGARLVVLATAT 135
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 48.7 bits (115), Expect = 3e-07
Identities = 9/45 (20%), Positives = 19/45 (42%)
Query: 1121 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSAT 1165
+YD+++ DE H +G + + ++L +AT
Sbjct: 91 SGGAYDIIICDECHSTDATSILGIGTVLDQAETAGARLVVLATAT 135
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Score = 48.7 bits (115), Expect = 2e-06
Identities = 45/280 (16%), Positives = 93/280 (33%), Gaps = 29/280 (10%)
Query: 285 DEIHE-RHLHGDFLLGVIKCLLHSTVEVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIK 343
+ E R L + L +K L + + ++ + +VL +I +
Sbjct: 13 EIYKEVRKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGL 72
Query: 344 CLLHSTAEV--KIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVELDRTKS 401
L H+ A I + T + Y ++ + K ++ ++ +
Sbjct: 73 LLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKASKEIFSDKRMKKAISLL 132
Query: 402 EKLDPGPYI-----RILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQ--- 453
+ ++ II ++ R + +++F + IV + K++
Sbjct: 133 VQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFV 192
Query: 454 GWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSY 513
G LS EQ + G +V+T++ E + + + VV Y
Sbjct: 193 GQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVF--------Y 244
Query: 514 DVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSE 553
+ S + QR+GR GR PG L ++
Sbjct: 245 E----------PVPSAIRSIQRRGRTGRHMPGRVIILMAK 274
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 39.3 bits (90), Expect = 7e-04
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 1/51 (1%)
Query: 310 EVAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSAT 360
+ + +++V+++DE H G + E ILM+AT
Sbjct: 89 RMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARAN-ESATILMTAT 138
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 38.9 bits (89), Expect = 9e-04
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 1119 DNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSAT 1165
+ +++V+++DE H G + E ILM+AT
Sbjct: 93 PTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARAN-ESATILMTAT 138
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Score = 37.8 bits (87), Expect = 0.004
Identities = 30/178 (16%), Positives = 57/178 (32%), Gaps = 26/178 (14%)
Query: 392 PIVELDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEK 451
P+V + T+++ LD ++ I ++ R ER L+ + + + E
Sbjct: 6 PLVRVKPTENQILD------LMEGIRERAARGER--TLVTVLTVRMAEELTSFLVE---- 53
Query: 452 SQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKEM 511
G LH L ++ + G C+V N+ + I + V + +
Sbjct: 54 -HGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLVA----ILDA 108
Query: 512 SYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYSLLAEYSTPEIRR 569
+ + S Q GRA R G + ++ RR
Sbjct: 109 DKEGFLRSER---------SLIQTIGRAARNARGEVWLYADRVSEAMQRAIEETNRRR 157
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1417 | |||
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.96 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.9 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.76 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.76 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.74 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.74 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.73 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.73 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.73 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.71 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.69 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.64 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.6 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 99.58 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.56 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.56 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 99.53 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.53 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.52 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.51 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.49 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.49 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 99.48 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.45 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.44 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 99.41 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 99.4 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.39 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.31 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.31 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.31 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.3 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.21 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.18 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.14 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 98.98 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 98.77 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 98.67 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 98.62 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 98.33 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 98.31 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 98.28 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 97.54 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 96.91 | |
| d1z3ix2 | 298 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 96.31 | |
| d1z63a1 | 230 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 96.06 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 95.1 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 94.71 | |
| d1nkta3 | 288 | Translocation ATPase SecA, nucleotide-binding doma | 94.6 | |
| d1tf5a3 | 273 | Translocation ATPase SecA, nucleotide-binding doma | 94.34 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 93.14 | |
| g1qhh.1 | 623 | DEXX box DNA helicase {Bacillus stearothermophilus | 92.74 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.48 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 91.99 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 91.87 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 91.38 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 91.27 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 91.24 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 91.16 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 91.13 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 91.01 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 90.7 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 90.64 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 90.47 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 90.32 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 90.32 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 90.08 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 89.71 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 89.61 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 89.34 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 89.26 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 89.08 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 88.67 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 88.17 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 88.04 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 87.89 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 87.47 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 87.07 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 86.75 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 85.64 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 85.49 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 85.45 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 85.41 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 85.15 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 85.08 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 84.99 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 84.91 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 84.77 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 84.76 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 84.47 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 84.42 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 84.34 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 84.28 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 84.09 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 84.08 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 84.06 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 83.95 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 83.46 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 83.34 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 83.3 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 83.21 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 83.12 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 83.02 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 82.81 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 82.65 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 82.59 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 82.45 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 81.97 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 81.91 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 81.9 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 81.89 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 81.42 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 80.98 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 80.91 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 80.88 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 80.77 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 80.76 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 80.48 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 80.37 |
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.96 E-value=4.8e-29 Score=284.01 Aligned_cols=199 Identities=21% Similarity=0.208 Sum_probs=138.6
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCCCHHHHHHHhccCceEEEeCCcccceeEEeccccc
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATINIELFHTYFNRIAKIIKVPGRLYPIQLEYHPIVE 395 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATln~~~~~~~f~~~~~vi~v~gr~~pv~v~~~~~~~ 395 (1417)
.+.++++||+||+|....++....++++.+. .+++.++++||||++... .....+..|+.........
T Consensus 97 ~~~~~~~vViDE~H~~~~~~~~~~~~l~~~~-~~~~~~~v~~SAT~~~~~-----------~~~~~~~~~~~~~~~~~~~ 164 (305)
T d2bmfa2 97 RVPNYNLIIMDEAHFTDPASIAARGYISTRV-EMGEAAGIFMTATPPGSR-----------DPFPQSNAPIMDEEREIPE 164 (305)
T ss_dssp CCCCCSEEEEESTTCCSHHHHHHHHHHHHHH-HHTSCEEEEECSSCTTCC-----------CSSCCCSSCEEEEECCCCC
T ss_pred cccceeEEEeeeeeecchhhHHHHHHHHHhh-ccccceEEEeecCCCcce-----------eeecccCCcceEEEEeccH
Confidence 4567899999999954444434444554443 346789999999985211 0111122222222111111
Q ss_pred cccccccCCCCChHHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhcc
Q psy3476 396 LDRTKSEKLDPGPYIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHY 475 (1417)
Q Consensus 396 ~~~~~~~~~~~~~~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~ 475 (1417)
. ... .. ...+. ..++++||||+++++++.+++.|.+ .++.+..+||+++.+.+ ..
T Consensus 165 ~--~~~-----~~----~~~~~-----~~~~~~lvf~~~~~~~~~l~~~L~~-----~~~~~~~l~~~~~~~~~----~~ 219 (305)
T d2bmfa2 165 R--SWN-----SG----HEWVT-----DFKGKTVWFVPSIKAGNDIAACLRK-----NGKKVIQLSRKTFDSEY----IK 219 (305)
T ss_dssp S--CCS-----SC----CHHHH-----SSCSCEEEECSCHHHHHHHHHHHHH-----HTCCCEECCTTCHHHHG----GG
T ss_pred H--HHH-----HH----HHHHH-----hhCCCEEEEeccHHHHHHHHHHHHh-----CCCCEEEeCCcChHHHH----hh
Confidence 0 000 00 11111 3468899999999999999999987 45678999999965543 46
Q ss_pred CCCCCceEEEecchhhccCCcCCeEEEEcCCcccc--eecccCCCccccceeecCHhhHHhhcCcCCCCCCCe-EEEecC
Q psy3476 476 APEGLRKCIVSTNIAETSITIDGIRFVVDSGKVKE--MSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGV-CYRLYS 552 (1417)
Q Consensus 476 f~~G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~--~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~-cy~L~t 552 (1417)
+++|.++++|||+++++|+|+ +++.|||+|.... ..||.+.....+...++|.++|.||+|||||.|.|. ...+|.
T Consensus 220 ~~~~~~~~lvaT~~~~~G~~~-~~~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~Qr~GR~GR~~~~~~~~~~~~ 298 (305)
T d2bmfa2 220 TRTNDWDFVVTTDISEMGANF-KAERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNENDQYIYM 298 (305)
T ss_dssp GGTSCCSEEEECGGGGTTCCC-CCSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCSSSCCCEEEEEC
T ss_pred hhccchhhhhhhHHHHhcCCC-CccEEEEcCCceeeeEecCCCCceEEeccccCCHHHHhhhhcCcCcCCCCceEEEEEC
Confidence 788999999999999999999 5788999887654 358888888889999999999999999999999544 444554
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.90 E-value=1.3e-26 Score=263.03 Aligned_cols=257 Identities=15% Similarity=0.048 Sum_probs=183.8
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEc
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVD 504 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VId 504 (1417)
+|+++|||||.++++.+++.|++ .+..|.++||.++.+++++ +++|+++|||||||+|+|+|| +|.+|||
T Consensus 36 ~g~~~~F~~s~~~~~~~a~~L~~-----~g~~V~~l~~~~~~~e~~~----~~~~~~~~~~~t~~~~~~~~~-~~~~vid 105 (299)
T d1yksa2 36 KRPTAWFLPSIRAANVMAASLRK-----AGKSVVVLNRKTFEREYPT----IKQKKPDFILATDIAEMGANL-CVERVLD 105 (299)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHH-----TTCCEEECCSSSCC------------CCCSEEEESSSTTCCTTC-CCSEEEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHh-----cCCeEEEEcCcCcHhHHhh----hhcCCcCEEEEechhhhceec-CceEEEe
Confidence 68999999999999999999987 5678999999999888765 568899999999999999999 5999999
Q ss_pred CCc-ccceecccCCCccccceeecCHhhHHhhcCcCCCCCCC-eEEEecCHHHH---HHhhccCCCcccccChHHHHHHH
Q psy3476 505 SGK-VKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG-VCYRLYSEEQY---SLLAEYSTPEIRRVSIDSLLLSL 579 (1417)
Q Consensus 505 sG~-~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G-~cy~L~t~~~~---~~l~~~~~pEI~r~~L~~~lL~l 579 (1417)
+|+ .|...||+..++..+...|+|++++.||+||+||.+.+ .||.+|+.... .....++.+++...+ +.+.+
T Consensus 106 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~~~~~~~y~~~~~~d~~~~~~~te~~i~l~~---i~l~~ 182 (299)
T d1yksa2 106 CRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYSEPTSENNAHHVCWLEASMLLDN---MEVRG 182 (299)
T ss_dssp CCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEECSCCCCCCTTBHHHHHHHHHHTT---SCCGG
T ss_pred cCceeceeeecCCCCeeEEeeeecCHHHHHHhcccccccCCCceEEEEeCCCCCCcccchhhhhhHHHHhhC---ccccc
Confidence 999 48889999999999999999999999999999998743 45556653211 111112222332222 23455
Q ss_pred HhhCCCCCcCCCCCCCCCcchhHHHHHHHHhcCCCCCCCCcChhhhhccCCCCChhhHHHHHhhhccCChhhHHHHhhhc
Q psy3476 580 VCMGLGDVRKFPFLEAPPAENIESSVRSLTQHGAIDSKERVTSLGRFLSDLPVDIPLGKMLVFGSMFHQIDTVLSLAAVL 659 (1417)
Q Consensus 580 k~lgi~~~~~f~~l~pP~~~~l~~Al~~L~~lGaId~~~~lT~LG~~ls~lpldp~lak~Ll~~~~f~cle~vl~IaA~L 659 (1417)
+.+|..+...|+++.+|+.+....+...+..+|+|+..+-+|.+|..++..++.+...++++
T Consensus 183 ~~~g~~~~~e~~~~~~p~g~~~L~~~~~l~~l~aL~~~d~p~~La~~va~~~~~~~~~~~~f------------------ 244 (299)
T d1yksa2 183 GMVAPLYGVEGTKTPVSPGEMRLRDDQRKVFRELVRNCDLPVWLSWQVAKAGLKTNDRKWCF------------------ 244 (299)
T ss_dssp GCCCCCSTTHHHHSSSCTTTTCCCHHHHHHHHHHHHTTCCCHHHHHHHHHTTCCTTCCGGGS------------------
T ss_pred ccccccchhhhccccCCCchhhhhHhHHHHHHHHHhhcCCCcchHHHHHhccccccccccee------------------
Confidence 66676677777888888887777788999999999887778888888888777665554432
Q ss_pred cCCCccccCCCCChhHH-HHHhhcccCCCChHHHHHHHHHHHHhhhhhchHHHHHHHcCCCHHHHH
Q psy3476 660 SVQSPFTNRAFRDPDCE-TARKELESNHGDPLTVLNAYKEWLGVKKDRVRSKKWCKRRGIEEQRFY 724 (1417)
Q Consensus 660 sv~~~F~~~~~~~~~~~-~~r~~f~~~~sD~ltlln~f~~w~~~~~~~~~~~~WC~~~~L~~~~L~ 724 (1417)
..|....-..+ ..+..|....|||+++++.|. .. +..+..||.++||.+..++
T Consensus 245 ------~~P~e~~i~~~~~~~~~f~~~~Gd~~~L~~r~~---D~---R~~sd~~~l~nFiq~a~~r 298 (299)
T d1yksa2 245 ------EGPEEHEILNDSGETVKCRAPGGAKKPLRPRWC---DE---RVSSDQSALSEFIKFAEGR 298 (299)
T ss_dssp ------CSCGGGCCBCTTSCBCEEECTTSCEEECCCSSE---EG---GGSSSHHHHHHHHHHHTTT
T ss_pred ------ECchhchhhhhhccccceeCCCcceeeeeeeEe---cc---cccCcHHHHHHHHHHHhcC
Confidence 22221111111 112357788999999888652 11 2234579999888776543
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.76 E-value=3.3e-19 Score=185.34 Aligned_cols=112 Identities=21% Similarity=0.415 Sum_probs=101.1
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVV 503 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VI 503 (1417)
...++||||+++..++.+++.|.. .++.+..+||++++++|..+++.|+.|+.+|||||+++++|+|+|+|++||
T Consensus 26 ~~~k~iIF~~s~~~~~~l~~~L~~-----~~~~~~~~~~~~~~~~r~~~l~~f~~~~~~iLv~Tdv~~rGiDi~~v~~VI 100 (162)
T d1fuka_ 26 SVTQAVIFCNTRRKVEELTTKLRN-----DKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVI 100 (162)
T ss_dssp TCSCEEEEESSHHHHHHHHHHHHH-----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEEEGGGTTTCCCCSCSEEE
T ss_pred CCCcEEEEEEEEchHHHHHHHHhh-----cCceEEEeccCCchhhHHHHHHHHhhcccceeeccccccccccCCCceEEE
Confidence 467899999999999999999987 678899999999999999999999999999999999999999999999999
Q ss_pred cCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHH
Q psy3476 504 DSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSL 558 (1417)
Q Consensus 504 dsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~ 558 (1417)
+ ||.|.+...|. ||+||+||.| .|.|+.++++++...
T Consensus 101 ~--------~d~P~~~~~yi----------hR~GR~gR~g~~g~~i~~~~~~d~~~ 138 (162)
T d1fuka_ 101 N--------YDLPANKENYI----------HRIGRGGRFGRKGVAINFVTNEDVGA 138 (162)
T ss_dssp E--------SSCCSSGGGGG----------GSSCSCC-----CEEEEEEETTTHHH
T ss_pred E--------eccchhHHHHH----------hhccccccCCCccEEEEEcCHHHHHH
Confidence 9 99999888888 9999999999 799999998876554
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=8.6e-19 Score=188.19 Aligned_cols=125 Identities=19% Similarity=0.317 Sum_probs=109.9
Q ss_pred HHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecc
Q psy3476 409 YIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488 (1417)
Q Consensus 409 ~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATn 488 (1417)
...++..+.. ..+.++||||+|++.++.++..|.. .++.+..+||++++++|.++++.|++|+.+|||||+
T Consensus 18 ~~~L~~~l~~----~~~~~~IIF~~t~~~~~~l~~~l~~-----~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaTd 88 (200)
T d1oywa3 18 LDQLMRYVQE----QRGKSGIIYCNSRAKVEDTAARLQS-----KGISAAAYHAGLENNVRADVQEKFQRDDLQIVVATV 88 (200)
T ss_dssp HHHHHHHHHH----TTTCCEEEECSSHHHHHHHHHHHHH-----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECT
T ss_pred HHHHHHHHHh----cCCCCEEEEEeeehhhHHhhhhhcc-----CCceeEEecCCCcHHHHHHHHHHHhcccceEEEecc
Confidence 3344444433 3356899999999999999999987 678999999999999999999999999999999999
Q ss_pred hhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHHhh
Q psy3476 489 IAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLLA 560 (1417)
Q Consensus 489 Iae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~l~ 560 (1417)
++++|||+|+|++||+ ||.|.+...|+ ||+|||||.| +|.|+.++++.+...+.
T Consensus 89 ~~~~GiD~p~v~~VI~--------~~~P~~~~~y~----------qr~GR~gR~g~~g~ai~~~~~~d~~~l~ 143 (200)
T d1oywa3 89 AFGMGINKPNVRFVVH--------FDIPRNIESYY----------QETGRAGRDGLPAEAMLFYDPADMAWLR 143 (200)
T ss_dssp TSCTTTCCTTCCEEEE--------SSCCSSHHHHH----------HHHTTSCTTSSCEEEEEEECHHHHHHHH
T ss_pred hhhhccCCCCCCEEEE--------CCCccchHHHH----------HHhhhhhcCCCCceEEEecCHHHHHHHH
Confidence 9999999999999999 99998766666 9999999999 89999999998876543
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=6.8e-19 Score=184.00 Aligned_cols=112 Identities=18% Similarity=0.420 Sum_probs=103.0
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEc
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVD 504 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VId 504 (1417)
..++||||++++.++.+++.|.. .++.+..+||++++++|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 34 ~~k~iiF~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~~~~r~~~~~~fk~g~~~iLv~Td~~~rGiDi~~v~~VIn 108 (168)
T d2j0sa2 34 ITQAVIFCNTKRKVDWLTEKMRE-----ANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIIN 108 (168)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHH-----TTCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEE
T ss_pred CCceEEEeeeHHHHHHHHHHhhh-----cccchhhhhhhhhHHHHHHHHHHHhcCCccEEeccchhcccccccCcceEEE
Confidence 56899999999999999999987 5778999999999999999999999999999999999999999999999999
Q ss_pred CCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHHh
Q psy3476 505 SGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLL 559 (1417)
Q Consensus 505 sG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~l 559 (1417)
||.|.+...|. ||+||+||.| +|.++.++++++...+
T Consensus 109 --------~d~P~~~~~yi----------hR~GR~gR~g~~G~~i~~~~~~d~~~~ 146 (168)
T d2j0sa2 109 --------YDLPNNRELYI----------HRIGRSGRYGRKGVAINFVKNDDIRIL 146 (168)
T ss_dssp --------SSCCSSHHHHH----------HHHTTSSGGGCCEEEEEEEEGGGHHHH
T ss_pred --------ecCCcCHHHHH----------hhhccccccCCCcEEEEEECHHHHHHH
Confidence 99988766655 9999999999 7999999998876543
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.73 E-value=1.2e-18 Score=182.50 Aligned_cols=114 Identities=21% Similarity=0.414 Sum_probs=104.3
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEE
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFV 502 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~V 502 (1417)
.+.+++||||++++.++.++..|.. .++.+..+||+++.++|..+++.|++|..++||||+++++|+|+|++++|
T Consensus 30 ~~~~k~iVF~~~~~~~~~l~~~L~~-----~g~~~~~~h~~~~~~~r~~~~~~f~~~~~~ilv~Td~~~~Gid~~~v~~V 104 (171)
T d1s2ma2 30 LQINQAIIFCNSTNRVELLAKKITD-----LGYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVV 104 (171)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHH-----HTCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEE
T ss_pred CCCCceEEEEeeeehhhHhHHhhhc-----ccccccccccccchhhhhhhhhhcccCccccccchhHhhhccccceeEEE
Confidence 3467999999999999999999987 47889999999999999999999999999999999999999999999999
Q ss_pred EcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHHh
Q psy3476 503 VDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSLL 559 (1417)
Q Consensus 503 IdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~l 559 (1417)
|+ ||+|.+...|. ||+||+||.| +|.|+.|+++.+...+
T Consensus 105 I~--------~d~p~~~~~y~----------qr~GR~gR~g~~g~~i~~v~~~e~~~~ 144 (171)
T d1s2ma2 105 IN--------FDFPKTAETYL----------HRIGRSGRFGHLGLAINLINWNDRFNL 144 (171)
T ss_dssp EE--------SSCCSSHHHHH----------HHHCBSSCTTCCEEEEEEECGGGHHHH
T ss_pred Ee--------cCCcchHHHHH----------HHhhhcccCCCccEEEEEeCHHHHHHH
Confidence 99 99998766665 9999999998 8999999998776544
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.73 E-value=3.9e-18 Score=177.79 Aligned_cols=122 Identities=19% Similarity=0.233 Sum_probs=105.9
Q ss_pred HHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchh
Q psy3476 411 RILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIA 490 (1417)
Q Consensus 411 ~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIa 490 (1417)
.+++.+.+.. ..++++||||+++++++.+++.|.+ .++.+..+||+|++.+|.++++.|++|+..|||||+++
T Consensus 19 dll~~i~~~~--~~g~r~lvfc~t~~~~~~l~~~L~~-----~Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~v~ 91 (174)
T d1c4oa2 19 DLMEGIRERA--ARGERTLVTVLTVRMAEELTSFLVE-----HGIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLL 91 (174)
T ss_dssp HHHHHHHHHH--HTTCEEEEECSSHHHHHHHHHHHHH-----TTCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCC
T ss_pred HHHHHHHHHH--hcCCcEEEEEcchhHHHHHHHHHHh-----cCCceEEEecccchHHHHHHHHHHHCCCeEEEEeeeee
Confidence 4555555443 2367899999999999999999998 78999999999999999999999999999999999999
Q ss_pred hccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecC
Q psy3476 491 ETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYS 552 (1417)
Q Consensus 491 e~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t 552 (1417)
++|+|+|+|++||+ ||++... .+-|..+|.||+|||||.++|.++.++.
T Consensus 92 ~~GiDip~V~~Vi~--------~~~~~~~-----~~~~~~~~iq~~GR~gR~~~g~~~~~~~ 140 (174)
T d1c4oa2 92 REGLDIPEVSLVAI--------LDADKEG-----FLRSERSLIQTIGRAARNARGEVWLYAD 140 (174)
T ss_dssp CTTCCCTTEEEEEE--------TTTTSCS-----GGGSHHHHHHHHGGGTTSTTCEEEEECS
T ss_pred eeeccCCCCcEEEE--------ecccccc-----ccchhHHHHHHhhhhhhcCCCeeEEeec
Confidence 99999999999999 8877632 2356778889999999999998877764
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.73 E-value=2.7e-18 Score=177.01 Aligned_cols=112 Identities=17% Similarity=0.375 Sum_probs=102.3
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVV 503 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VI 503 (1417)
.++++||||++++.++.+++.|++ .++.+..+||++++.+|..+++.|++|..+|+|||+++++|||+|++++||
T Consensus 27 ~~~k~IIF~~s~~~~~~l~~~L~~-----~g~~~~~~~~~~~~~~r~~~~~~f~~~~~~ilv~T~~~~~Gid~~~v~~Vi 101 (155)
T d1hv8a2 27 KEFYGLVFCKTKRDTKELASMLRD-----IGFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVI 101 (155)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHH-----TTCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEE
T ss_pred CCCCEEEEECchHHHHHHHhhhcc-----cccccccccccchhhhhhhhhhhhhcccceeeeehhHHhhhhhhccCcEEE
Confidence 457899999999999999999987 578899999999999999999999999999999999999999999999999
Q ss_pred cCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHHH
Q psy3476 504 DSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYSL 558 (1417)
Q Consensus 504 dsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~~ 558 (1417)
+ ||+|.+...|. ||+||+||.| +|.|+.++++.+...
T Consensus 102 ~--------~d~p~~~~~y~----------qr~GR~gR~g~~g~~i~~~~~~d~~~ 139 (155)
T d1hv8a2 102 N--------YHLPQNPESYM----------HRIGRTGRAGKKGKAISIINRREYKK 139 (155)
T ss_dssp E--------SSCCSCHHHHH----------HHSTTTCCSSSCCEEEEEECTTSHHH
T ss_pred E--------ecCCCCHHHHH----------HHHHhcCcCCCCceEEEEEchHHHHH
Confidence 9 99987655555 9999999998 799999998876554
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.71 E-value=1e-17 Score=176.69 Aligned_cols=122 Identities=19% Similarity=0.176 Sum_probs=103.2
Q ss_pred HHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchh
Q psy3476 411 RILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIA 490 (1417)
Q Consensus 411 ~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIa 490 (1417)
.++..+.+.. ..++++||||+++++++.++..|++ .++.+..+||+|++++|.++++.|++|+.+|||||+++
T Consensus 19 ~ll~~i~~~~--~~~~~~iif~~~~~~~~~~~~~l~~-----~g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTdv~ 91 (181)
T d1t5la2 19 DLIGEIRERV--ERNERTLVTTLTKKMAEDLTDYLKE-----AGIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLL 91 (181)
T ss_dssp HHHHHHHHHH--HTTCEEEEECSSHHHHHHHHHHHHT-----TTCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEESCCC
T ss_pred HHHHHHHHHH--hcCCeEEEEeehhhhhHHHHHHHHh-----CCcceeEecCCccHHHHHHHHHHHHCCCCCEEEehhHH
Confidence 3444444433 2356899999999999999999987 68999999999999999999999999999999999999
Q ss_pred hccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecC
Q psy3476 491 ETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYS 552 (1417)
Q Consensus 491 e~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t 552 (1417)
++|||+|+|++||+ ||.|.... +-|..+|.||+|||||.|.|.++.++.
T Consensus 92 ~rGiDip~v~~VI~--------~d~p~~~~-----~~s~~~yi~R~GRagR~g~~~~~~~~~ 140 (181)
T d1t5la2 92 REGLDIPEVSLVAI--------LDADKEGF-----LRSERSLIQTIGRAARNANGHVIMYAD 140 (181)
T ss_dssp SSSCCCTTEEEEEE--------TTTTSCSG-----GGSHHHHHHHHGGGTTSTTCEEEEECS
T ss_pred HccCCCCCCCEEEE--------ecCCcccc-----cccHHHHHHHHHhhccccCceeEeecc
Confidence 99999999999999 99886421 124567789999999999887766654
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=5.5e-18 Score=177.06 Aligned_cols=109 Identities=24% Similarity=0.420 Sum_probs=100.1
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVV 503 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VI 503 (1417)
..+++||||++++.++.+++.|.+ .++.+..+||+|++++|..+++.|++|..+|||||+++++|+|+|++++||
T Consensus 26 ~~~k~iIF~~~~~~~~~l~~~L~~-----~~~~~~~ihg~~~~~~r~~~l~~F~~g~~~iLv~T~~~~~Gid~~~~~~vi 100 (168)
T d1t5ia_ 26 EFNQVVIFVKSVQRCIALAQLLVE-----QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAF 100 (168)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHH-----TTCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEESSCCSTTCCGGGCSEEE
T ss_pred CCCeEEEEEeeeecchhhhhhhcc-----ccccccccccccchhhhhhhhhhhccccceeeeccccccchhhcccchhhh
Confidence 467899999999999999999987 678899999999999999999999999999999999999999999999999
Q ss_pred cCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHH
Q psy3476 504 DSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQ 555 (1417)
Q Consensus 504 dsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~ 555 (1417)
+ ||+|.+...|+ ||+||+||.| +|.|+.++++.+
T Consensus 101 ~--------~~~p~~~~~yi----------qr~GR~gR~g~~g~~i~l~~~~~ 135 (168)
T d1t5ia_ 101 N--------YDMPEDSDTYL----------HRVARAGRFGTKGLAITFVSDEN 135 (168)
T ss_dssp E--------SSCCSSHHHHH----------HHHHHHTGGGCCCEEEEEECSHH
T ss_pred h--------hhcccchhhHh----------hhhhhcccCCCccEEEEEECchH
Confidence 9 99888766655 9999999998 799999997654
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.64 E-value=1.9e-16 Score=169.99 Aligned_cols=129 Identities=22% Similarity=0.208 Sum_probs=103.8
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhcc-------------------------CCcEEEEecCCCCHHHHHHHhccCCC
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKS-------------------------QGWIVLPLHSTLSLEEQDRVFHYAPE 478 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~-------------------------~~~~V~~LHs~Ls~~eR~~v~~~f~~ 478 (1417)
+++++||||+|+++++.+|..|....... ....|..+||+|++++|..+++.|++
T Consensus 39 ~~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~~~r~~ie~~f~~ 118 (201)
T d2p6ra4 39 ENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRR 118 (201)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHT
T ss_pred cCCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHhhhhhHHHHHHHHhC
Confidence 36799999999999999999887532110 01237889999999999999999999
Q ss_pred CCceEEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHHH
Q psy3476 479 GLRKCIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEEQ 555 (1417)
Q Consensus 479 G~rkVLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~~ 555 (1417)
|.++|||||+++++|||+|++++||.+ ...||. ...+.+.++++||+|||||.| .|.||.++.+.+
T Consensus 119 g~i~vlvaT~~l~~Gin~p~~~vvi~~----~~~~d~-------~~~~~~~~~~~q~~GRAGR~g~~~~G~~~l~~~~~~ 187 (201)
T d2p6ra4 119 GNIKVVVATPTLAAGVNLPARRVIVRS----LYRFDG-------YSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRD 187 (201)
T ss_dssp TSCCEEEECSTTTSSSCCCBSEEEECC----SEEESS-------SEEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGG
T ss_pred CCceEEEechHHHhhcCCCCceEEEec----ceeccC-------CcCCCCHHHHHHHhcccCCCCCCCeeEEEEEeCCCC
Confidence 999999999999999999999999972 223442 124678999999999999988 699999988876
Q ss_pred HHH-hhccC
Q psy3476 556 YSL-LAEYS 563 (1417)
Q Consensus 556 ~~~-l~~~~ 563 (1417)
.+. +..+.
T Consensus 188 ~~~~~k~~~ 196 (201)
T d2p6ra4 188 REIAVKRYI 196 (201)
T ss_dssp HHHHHHTTT
T ss_pred hHHHHHHHh
Confidence 553 44443
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.60 E-value=2.9e-16 Score=158.39 Aligned_cols=102 Identities=25% Similarity=0.348 Sum_probs=84.4
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEEc
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVVD 504 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VId 504 (1417)
.+++||||+|+++++.+++.|++ .++.+..+||+|+. +.|++|+.+|||||+++++||| |+|+.|||
T Consensus 35 ~~k~IVFc~t~~~ae~la~~L~~-----~G~~~~~~H~~~~~-------~~~~~~~~~vlvaTd~~~~GiD-~~v~~Vi~ 101 (138)
T d1jr6a_ 35 GGRHLIFCHSKKKCDELAAKLVA-----LGINAVAYYRGLDV-------SVIPTNGDVVVVATDALMTGFT-GDFDSVID 101 (138)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHH-----HTCEEEEECTTCCS-------CCCTTSSCEEEEESSSSCSSSC-CCBSEEEE
T ss_pred CCCEEEEeCcHHHHHHHHHHHhc-----cccchhhhhccchh-------hhhhhhhcceeehhHHHHhccc-cccceEEE
Confidence 67899999999999999999987 57899999999984 4578999999999999999999 99999999
Q ss_pred CCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHH
Q psy3476 505 SGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEE 554 (1417)
Q Consensus 505 sG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~ 554 (1417)
.+. .|++|. +..+|.||+|||||..+|. |.++++.
T Consensus 102 ~~~----~~~~P~----------~~~~y~qr~GR~gRg~~G~-~~~i~~~ 136 (138)
T d1jr6a_ 102 CNT----SDGKPQ----------DAVSRTQRRGRTGRGKPGI-YRFVAPG 136 (138)
T ss_dssp CSE----ETTEEC----------CHHHHHHHHTTBCSSSCEE-EEECCSS
T ss_pred EEe----cCCCCC----------CHHHHHhHhccccCCCCcE-EEEEcCC
Confidence 332 244444 4455669999999933895 7777654
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.5e-14 Score=155.52 Aligned_cols=101 Identities=17% Similarity=0.099 Sum_probs=68.6
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC-----CCcEEEecchHHHHHHHHHHHHHHHccccCCeEEE
Q psy3476 40 VAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG-----FQRIACTQPRRIACISLSKRVAYETLSQYSNLVGY 114 (1417)
Q Consensus 40 ~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~-----~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy 114 (1417)
....|++.+..+.++++++++||||||||..+..++++.. ..+.++..|+|.+|.++.+.+..-.....+..+..
T Consensus 26 pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllP~l~~~~~~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~~~~~~ 105 (206)
T d1veca_ 26 PSPIQEESIPIALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMA 105 (206)
T ss_dssp CCHHHHHHHHHHHTTCCEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEE
T ss_pred CCHHHHHHHHHHHcCCCEEeeccCccccccccccchhhcccccccCcceEEEeecchhhHHHHHHHHHHhhcccCccccc
Confidence 3566889999999999999999999999998877777643 24689999999999998775544332222222222
Q ss_pred EEeec------ccccCCccEEEEccchhHHhh
Q psy3476 115 QIRFE------KHRREKTKIVFITEGLLLRQD 140 (1417)
Q Consensus 115 ~ir~e------~~~~~~t~I~~~T~g~llr~l 140 (1417)
..... ........|+++|||.+.+.+
T Consensus 106 ~~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~ 137 (206)
T d1veca_ 106 TTGGTNLRDDIMRLDDTVHVVIATPGRILDLI 137 (206)
T ss_dssp ECSSSCHHHHHHHTTSCCSEEEECHHHHHHHH
T ss_pred ccCCccHHHHHHHHHhccCeEEeCCccccccc
Confidence 21111 111345667777777776654
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.56 E-value=1.4e-14 Score=156.01 Aligned_cols=99 Identities=15% Similarity=0.151 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHhcC-CeEEEEcCCCcchhHHHHHHHHHcCC----CcEEEecchHHHHHHHHHHHHHHHccccCCeEEEE
Q psy3476 41 AQYKQEIIDTVLKE-RVVIIAGDTGCGKSTQIPQYLVQAGF----QRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQ 115 (1417)
Q Consensus 41 ~~~q~~il~~i~~~-~~~iI~a~TGsGKTt~ipq~ile~~~----~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy~ 115 (1417)
...|.+++..+.++ .++++++|||||||..+...+++... .++++..|++..|.++.+.+.. +....+..++..
T Consensus 28 t~iQ~~~ip~~l~g~~d~iv~a~TGsGKT~~~~l~~~~~~~~~~~~~~lil~pt~~l~~q~~~~~~~-~~~~~~~~v~~~ 106 (208)
T d1hv8a1 28 TDIQMKVIPLFLNDEYNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIES-LKGNKNLKIAKI 106 (208)
T ss_dssp CHHHHHHHHHHHHTCSEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHH-HHCSSCCCEEEE
T ss_pred CHHHHHHHHHHHcCCCCeeeechhcccccceeecccccccccccCcceEEEeeccccchhhhhhhhh-hcccCCeEEEEe
Confidence 45688899877766 58999999999999988877766432 4799999999999999876544 444444444332
Q ss_pred Eeeccc-----ccCCccEEEEccchhHHhh
Q psy3476 116 IRFEKH-----RREKTKIVFITEGLLLRQD 140 (1417)
Q Consensus 116 ir~e~~-----~~~~t~I~~~T~g~llr~l 140 (1417)
...... .-..++|+++|||.|++.+
T Consensus 107 ~g~~~~~~~~~~l~~~~IlV~TP~~l~~~l 136 (208)
T d1hv8a1 107 YGGKAIYPQIKALKNANIVVGTPGRILDHI 136 (208)
T ss_dssp CTTSCHHHHHHHHHTCSEEEECHHHHHHHH
T ss_pred eCCCChHHHHHhcCCCCEEEEChHHHHHHH
Confidence 221110 0123456666666555443
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=1.3e-14 Score=157.76 Aligned_cols=101 Identities=17% Similarity=0.116 Sum_probs=70.9
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC-----CcEEEecchHHHHHHHHHHHHHHHccccCCeEE
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF-----QRIACTQPRRIACISLSKRVAYETLSQYSNLVG 113 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~-----~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vG 113 (1417)
-.+..|.+.+..+.+++++++.|+||||||..+..++++.-. .+.++..|+|.+|.|+.+.+ ..++...+-.+.
T Consensus 39 ~pt~IQ~~aIp~il~g~dvi~~a~TGSGKTlayllPil~~l~~~~~~~~~lil~PtreLa~Qi~~~~-~~l~~~~~i~~~ 117 (222)
T d2j0sa1 39 KPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGL-LALGDYMNVQCH 117 (222)
T ss_dssp SCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHH-HHHTTTTTCCEE
T ss_pred CCCHHHHHHHHHHHCCCCeEEEcCcchhhhhhhcccccccccccccCceeEEecchHHHHHHHHHHH-HHHhCccceeEE
Confidence 345678899999999999999999999999988888877432 46888899999999998754 444444444444
Q ss_pred EEEeeccc------ccCCccEEEEccchhHHhh
Q psy3476 114 YQIRFEKH------RREKTKIVFITEGLLLRQD 140 (1417)
Q Consensus 114 y~ir~e~~------~~~~t~I~~~T~g~llr~l 140 (1417)
..+..... ......|+++|+|.|.+.+
T Consensus 118 ~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~ 150 (222)
T d2j0sa1 118 ACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMI 150 (222)
T ss_dssp EECTTSCHHHHHHHHHHCCSEEEECHHHHHHHH
T ss_pred EEeecccchhhHHHhccCCeEEeCCCCcHHhcc
Confidence 43322111 1234567777777766543
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=6e-14 Score=152.14 Aligned_cols=101 Identities=18% Similarity=0.111 Sum_probs=70.0
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC-----CCcEEEecchHHHHHHHHHHHHHHHccccCCeEEE
Q psy3476 40 VAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG-----FQRIACTQPRRIACISLSKRVAYETLSQYSNLVGY 114 (1417)
Q Consensus 40 ~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~-----~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy 114 (1417)
....|++.+..+..+++++++|+||||||..+..++++.- ..+.++..|+|.+|.|+.+.+..-. ...+..+..
T Consensus 35 pt~iQ~~aip~il~g~dvl~~a~TGsGKTlayllp~l~~i~~~~~~~~alil~Pt~eL~~Q~~~~~~~~~-~~~~~~~~~ 113 (218)
T d2g9na1 35 PSAIQQRAILPCIKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALG-DYMGASCHA 113 (218)
T ss_dssp CCHHHHHHHHHHHHTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHH-TTTTCCEEE
T ss_pred CCHHHHHHHHHHHcCCCEEEEcccchhhhhhhhhhhhheecccccCccEEEEcccchhhhhHHHHHhhhc-cccceeEEe
Confidence 3466889999999999999999999999998877777542 2578999999999999987665543 333333322
Q ss_pred EEeeccc-------ccCCccEEEEccchhHHhhc
Q psy3476 115 QIRFEKH-------RREKTKIVFITEGLLLRQDS 141 (1417)
Q Consensus 115 ~ir~e~~-------~~~~t~I~~~T~g~llr~l~ 141 (1417)
....... ......|+++|||.+.+.+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~~l~ 147 (218)
T d2g9na1 114 CIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLN 147 (218)
T ss_dssp ECC--CCCSTTTSSSSCCCSEEEECHHHHHHHHH
T ss_pred eecccchhHHHHHHhcCCCEEEEeCChhHHHHHh
Confidence 2211111 11245688888887776653
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=6.6e-14 Score=150.58 Aligned_cols=62 Identities=16% Similarity=0.127 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC-----CcEEEecchHHHHHHHHHHHHH
Q psy3476 41 AQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF-----QRIACTQPRRIACISLSKRVAY 102 (1417)
Q Consensus 41 ~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~-----~~i~~tqPrr~aa~~~a~rva~ 102 (1417)
+..|.+.+..+.++++++++||||||||..+..++++... .+.++..|+|..|.++.+.+..
T Consensus 25 t~iQ~~aip~il~g~dvl~~A~TGsGKTla~~lp~l~~~~~~~~~~~~lil~PtreL~~qi~~~~~~ 91 (207)
T d1t6na_ 25 SEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYER 91 (207)
T ss_dssp CHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCeEEEeccccccccccccceeeeecccCCCceEEEEeccchhhHHHHHHHHH
Confidence 4668899999999999999999999999988777776432 4688999999999998876544
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.52 E-value=2.3e-15 Score=169.74 Aligned_cols=124 Identities=22% Similarity=0.346 Sum_probs=98.5
Q ss_pred HHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEe--------cCCCCHHHHHHHhccCCCCCce
Q psy3476 411 RILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPL--------HSTLSLEEQDRVFHYAPEGLRK 482 (1417)
Q Consensus 411 ~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~L--------Hs~Ls~~eR~~v~~~f~~G~rk 482 (1417)
.+.+.+.+.+....++++||||++++.++.+++.|.+ .++.+..+ |++++..+|..+++.|++|+.+
T Consensus 147 ~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~-----~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g~~~ 221 (286)
T d1wp9a2 147 KLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVK-----DGIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFN 221 (286)
T ss_dssp HHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHH-----TTCCEEEECCSSCC-------CCHHHHHHHHHHHTSCS
T ss_pred HHHHHHHHHHHhCCCCcEEEEeCcHHhHHHHHHHHHH-----cCCceEEeeccccccccchhchHHHHHHHHHHHcCCCc
Confidence 3344444443335577999999999999999999987 45556656 4467777899999999999999
Q ss_pred EEEecchhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEecCHHHHH
Q psy3476 483 CIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLYSEEQYS 557 (1417)
Q Consensus 483 VLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~t~~~~~ 557 (1417)
|||||+++++|||+|++++||+ ||++.+.. ++.||+||+||.++|.+|.|+++...+
T Consensus 222 vLv~T~~~~~Gld~~~~~~Vi~--------~d~~~~~~----------~~~Qr~GR~gR~~~~~~~~l~~~~~~e 278 (286)
T d1wp9a2 222 VLVATSVGEEGLDVPEVDLVVF--------YEPVPSAI----------RSIQRRGRTGRHMPGRVIILMAKGTRD 278 (286)
T ss_dssp EEEECGGGGGGGGSTTCCEEEE--------SSCCHHHH----------HHHHHHTTSCSCCCSEEEEEEETTSHH
T ss_pred EEEEccceeccccCCCCCEEEE--------eCCCCCHH----------HHHHHHHhCCCCCCCEEEEEEeCCCHH
Confidence 9999999999999999999999 99886554 455999999999999999999875443
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.51 E-value=9.9e-14 Score=149.76 Aligned_cols=102 Identities=17% Similarity=0.112 Sum_probs=67.8
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC-----CCcEEEecchHHHHHHHHHHHHHHHccccCCeE
Q psy3476 38 LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG-----FQRIACTQPRRIACISLSKRVAYETLSQYSNLV 112 (1417)
Q Consensus 38 lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~-----~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~v 112 (1417)
--.+..|.+.+..+..++++++++|||||||..+...+++.- ..++++..|+|.++.++...+... ....+..+
T Consensus 31 ~~pt~iQ~~aip~il~g~dvl~~a~TGsGKT~a~~lp~i~~l~~~~~~~~~lil~pt~el~~q~~~~~~~~-~~~~~~~~ 109 (212)
T d1qdea_ 31 EEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMAL-AFHMDIKV 109 (212)
T ss_dssp CSCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHH-TTTSCCCE
T ss_pred CCCCHHHHHHHHHHHcCCCEEeecccccchhhhhHhhhHhhhhccCCCcceEEEcccHHHhhhhhhhhccc-ccccccce
Confidence 344577999999999999999999999999998777776542 247889999999999998876443 22222222
Q ss_pred EEEEe-----ecccccCCccEEEEccchhHHhh
Q psy3476 113 GYQIR-----FEKHRREKTKIVFITEGLLLRQD 140 (1417)
Q Consensus 113 Gy~ir-----~e~~~~~~t~I~~~T~g~llr~l 140 (1417)
..... .+.....+..|+++|+|.+...+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~IvI~TP~~l~~~~ 142 (212)
T d1qdea_ 110 HACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNI 142 (212)
T ss_dssp EEECC----------CTTCSEEEECHHHHHHHH
T ss_pred eeEeeccchhHHHHHhcCCcEEEECCCcccccc
Confidence 21111 11111224567777777666543
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.49 E-value=4.2e-14 Score=151.06 Aligned_cols=63 Identities=14% Similarity=0.124 Sum_probs=51.4
Q ss_pred CcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc--CCCcEEEecchHHHHHHHHHHHH
Q psy3476 39 PVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA--GFQRIACTQPRRIACISLSKRVA 101 (1417)
Q Consensus 39 p~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~--~~~~i~~tqPrr~aa~~~a~rva 101 (1417)
.++++|.++++.+.++++++|++|||||||+.+...++.. ...+++++.|++.++.+..+++.
T Consensus 25 ~l~~~Q~~ai~~l~~~~~~il~apTGsGKT~~a~l~i~~~~~~~~~vl~l~P~~~L~~q~~~~~~ 89 (202)
T d2p6ra3 25 ELFPPQAEAVEKVFSGKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFK 89 (202)
T ss_dssp CCCCCCHHHHHHHTTCSCEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCCchhHHHHHHHHHHhhccCcceeecccHHHHHHHHHHHH
Confidence 3556799999999999999999999999998766655543 23589999999988888777663
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.49 E-value=3.7e-14 Score=141.79 Aligned_cols=80 Identities=19% Similarity=0.250 Sum_probs=58.5
Q ss_pred hcCCeEEEEcCCCcchhHHHHHHHHHcCCCcEEEecchHHHHHHHHHHHHHHHccccCCeEEEEEeecccccCCccEEEE
Q psy3476 52 LKERVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQIRFEKHRREKTKIVFI 131 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ipq~ile~~~~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy~ir~e~~~~~~t~I~~~ 131 (1417)
+++++.+|.||||||||++++.++.+.+ .+++++.||+.++.+.++++++.+... .|+..... .....+.++++
T Consensus 6 ~~~~~~ll~apTGsGKT~~~~~~~~~~~-~~vli~~P~~~l~~q~~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~ 79 (136)
T d1a1va1 6 QSFQVAHLHAPTGSGKSTKVPAAYAAQG-YKVLVLNPSVAATLGFGAYMSKAHGVD----PNIRTGVR-TITTGSPITYS 79 (136)
T ss_dssp SSCEEEEEECCTTSCTTTHHHHHHHTTT-CCEEEEESCHHHHHHHHHHHHHHHSCC----CEEECSSC-EECCCCSEEEE
T ss_pred cCCCEEEEEeCCCCCHHHHHHHHHHHcC-CcEEEEcChHHHHHHHHHHHHHHhhcc----cccccccc-ccccccceEEE
Confidence 4678999999999999999998887654 479999999999999999988776543 33322222 22334567777
Q ss_pred ccchhH
Q psy3476 132 TEGLLL 137 (1417)
Q Consensus 132 T~g~ll 137 (1417)
|.+.+.
T Consensus 80 ~~~~~~ 85 (136)
T d1a1va1 80 TYGKFL 85 (136)
T ss_dssp EHHHHH
T ss_pred eeeeec
Confidence 776544
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.48 E-value=1.5e-13 Score=147.48 Aligned_cols=64 Identities=16% Similarity=0.161 Sum_probs=52.0
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC-----CcEEEecchHHHHHHHHHHHHHH
Q psy3476 40 VAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF-----QRIACTQPRRIACISLSKRVAYE 103 (1417)
Q Consensus 40 ~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~-----~~i~~tqPrr~aa~~~a~rva~e 103 (1417)
....|.+++..+.++++++++||||||||..+..++++... ...++..|.+..+.+.+..+...
T Consensus 24 pt~iQ~~aip~~l~G~dvii~a~TGSGKTlayllp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (209)
T d1q0ua_ 24 PTEIQERIIPGALRGESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKI 92 (209)
T ss_dssp CCHHHHHHHHHHHHTCCEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCeEeecccccccceeeeeeeccccccccccccccccccccchhHHHHHHHHhh
Confidence 34668899999999999999999999999988777776443 46788888988888887766544
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.45 E-value=6.2e-15 Score=157.85 Aligned_cols=125 Identities=22% Similarity=0.315 Sum_probs=93.5
Q ss_pred HHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHH-----HHHHhhhh-ccCCcEEEEecCCCCHHHHHHHhccCCCCCce
Q psy3476 409 YIRILSIIDKKYPRTERGDVLIFMSGISEISSIV-----RAAQEYNE-KSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRK 482 (1417)
Q Consensus 409 ~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la-----~~L~~~~~-~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rk 482 (1417)
...+.+.|.+.+ ..++++-|.||-.++.+.+. +....+.. ..+++.+..+||.|++++|+++++.|++|+.+
T Consensus 15 ~~~v~~~I~~el--~~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~~~~p~~~v~~lHG~m~~~eke~~m~~F~~g~~~ 92 (206)
T d1gm5a4 15 VNEVYEFVRQEV--MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYD 92 (206)
T ss_dssp HHHHHHHHHHHT--TTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTSSS
T ss_pred HHHHHHHHHHHH--HcCCCEEEEEeeecccccccchhhHHHHHHHHHhcCCCCeEEEEeecccHHHHHHHHHHHHCCCEE
Confidence 345677777776 45789999999887766532 11111111 23567888999999999999999999999999
Q ss_pred EEEecchhhccCCcCCeEEEEcCCcccceecccCC-CccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCH
Q psy3476 483 CIVSTNIAETSITIDGIRFVVDSGKVKEMSYDVTA-KMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSE 553 (1417)
Q Consensus 483 VLVATnIae~GIdIP~V~~VIdsG~~k~~~yD~~~-~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~ 553 (1417)
|||||+++|+|||+|++++||. ||++. +.+ ++.|++||+||.+ +|.||.++++
T Consensus 93 iLVaTtViE~GIDip~a~~iii--------~~a~~fgls----------qlhQlrGRvGR~~~~~~~~l~~~~ 147 (206)
T d1gm5a4 93 ILVSTTVIEVGIDVPRANVMVI--------ENPERFGLA----------QLHQLRGRVGRGGQEAYCFLVVGD 147 (206)
T ss_dssp BCCCSSCCCSCSCCTTCCEEEB--------CSCSSSCTT----------HHHHHHHTSCCSSTTCEEECCCCS
T ss_pred EEEEehhhhccccccCCcEEEE--------EccCCccHH----------HHHhhhhheeeccccceeEeeecc
Confidence 9999999999999999999988 88775 444 4459999999999 8999999864
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.44 E-value=9.4e-13 Score=141.19 Aligned_cols=99 Identities=15% Similarity=0.098 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCC-----CcEEEecchHHHHHHHHHHHHHHHccccCCeEEEE
Q psy3476 41 AQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGF-----QRIACTQPRRIACISLSKRVAYETLSQYSNLVGYQ 115 (1417)
Q Consensus 41 ~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~-----~~i~~tqPrr~aa~~~a~rva~e~~~~~g~~vGy~ 115 (1417)
...|.+++..+.+++++++.||||||||......+++... .+.++..|.+..+.+....... .+...+-.+...
T Consensus 25 t~iQ~~aip~il~g~dvi~~a~tGsGKTlay~lp~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 103 (206)
T d1s2ma1 25 SPIQEEAIPVAITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRT-LGKHCGISCMVT 103 (206)
T ss_dssp CHHHHHHHHHHHHTCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHH-HTTTTTCCEEEE
T ss_pred CHHHHHHHHHHHcCCCEEEecCCcchhhhhhccccccccccccccccceeeccchhhhhhhhhhhhh-cccccCeeEEee
Confidence 4568899999999999999999999999987766665432 3567777888887777654433 344444444332
Q ss_pred Eeecc------cccCCccEEEEccchhHHhh
Q psy3476 116 IRFEK------HRREKTKIVFITEGLLLRQD 140 (1417)
Q Consensus 116 ir~e~------~~~~~t~I~~~T~g~llr~l 140 (1417)
..... .......|+++|+|.|.+.+
T Consensus 104 ~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l 134 (206)
T d1s2ma1 104 TGGTNLRDDILRLNETVHILVGTPGRVLDLA 134 (206)
T ss_dssp CSSSCHHHHHHHTTSCCSEEEECHHHHHHHH
T ss_pred cCccchhhHHHHhcccceEEEECCccccccc
Confidence 22111 12345677788887777654
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=2.2e-13 Score=144.80 Aligned_cols=120 Identities=19% Similarity=0.209 Sum_probs=102.2
Q ss_pred HHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhh
Q psy3476 412 ILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAE 491 (1417)
Q Consensus 412 il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae 491 (1417)
+.+.|.+.+ ..++++-+.||..++++.+++.+.+.. ++..+..+||.|+.+++++++..|.+|+.+|||||++.|
T Consensus 20 i~~~I~~El--~rGgQvy~V~p~I~~~e~~~~~l~~~~---p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~TtvIE 94 (211)
T d2eyqa5 20 VREAILREI--LRGGQVYYLYNDVENIQKAAERLAELV---PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIE 94 (211)
T ss_dssp HHHHHHHHH--TTTCEEEEECCCSSCHHHHHHHHHHHC---TTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTG
T ss_pred HHHHHHHHH--HcCCeEEEEEcCccchhhHHHHHHHhC---CceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEehhhh
Confidence 455565555 458999999999999999999988765 678899999999999999999999999999999999999
Q ss_pred ccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCH
Q psy3476 492 TSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSE 553 (1417)
Q Consensus 492 ~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~ 553 (1417)
.|||||+++++|- ++... | .-++..|.+||+||.+ .|.||.+++.
T Consensus 95 vGiDvpnA~~iiI--------~~a~r----f-----GLaQLhQLRGRVGR~~~~s~c~l~~~~ 140 (211)
T d2eyqa5 95 TGIDIPTANTIII--------ERADH----F-----GLAQLHQLRGRVGRSHHQAYAWLLTPH 140 (211)
T ss_dssp GGSCCTTEEEEEE--------TTTTS----S-----CHHHHHHHHTTCCBTTBCEEEEEEECC
T ss_pred hccCCCCCcEEEE--------ecchh----c-----cccccccccceeeecCccceEEEEecC
Confidence 9999999998885 55543 1 2355669999999998 7999998853
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=99.40 E-value=1.4e-12 Score=143.05 Aligned_cols=98 Identities=13% Similarity=0.152 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc--------------CCCcEEEecchHHHHHHHHHHHHHHHcc
Q psy3476 41 AQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA--------------GFQRIACTQPRRIACISLSKRVAYETLS 106 (1417)
Q Consensus 41 ~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~--------------~~~~i~~tqPrr~aa~~~a~rva~e~~~ 106 (1417)
...|.+++..+.++++++++||||||||.....++++. ...++++..|+|.+|.++.+.+.. .+.
T Consensus 45 t~iQ~~~ip~il~g~dvvi~a~TGsGKTlayllp~l~~l~~~~~~~~~~~~~~~~~alil~pt~el~~q~~~~~~~-~~~ 123 (238)
T d1wrba1 45 TPIQKNAIPAILEHRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQK-FSL 123 (238)
T ss_dssp CHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHH-HHT
T ss_pred CHHHHHHhhhhhCCCCEEEECCCCCCcceeeHHHHHHHHHhcccccccccCCCCceEEEeccchhhhcchheeeee-ccc
Confidence 46788999999999999999999999999766665542 124699999999999999865433 333
Q ss_pred ccCCeEEEEEeecc------cccCCccEEEEccchhHHh
Q psy3476 107 QYSNLVGYQIRFEK------HRREKTKIVFITEGLLLRQ 139 (1417)
Q Consensus 107 ~~g~~vGy~ir~e~------~~~~~t~I~~~T~g~llr~ 139 (1417)
..+-.+........ .......|+++|+|.|.+.
T Consensus 124 ~~~~~~~~~~g~~~~~~~~~~~~~~~~ivV~TP~~l~~~ 162 (238)
T d1wrba1 124 NTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDF 162 (238)
T ss_dssp TSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHH
T ss_pred CCCcEEEEEeccchhhHHHhhcccCCceeecCHHHHHhH
Confidence 33333332211110 1122345666666666554
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.39 E-value=4.5e-13 Score=132.54 Aligned_cols=50 Identities=14% Similarity=0.226 Sum_probs=39.3
Q ss_pred HhcCCeEEEEcCCCcchhHHHHHHHHHc---CCCcEEEecchHHHHHHHHHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQIPQYLVQA---GFQRIACTQPRRIACISLSKRV 100 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~ipq~ile~---~~~~i~~tqPrr~aa~~~a~rv 100 (1417)
++++++++|++|||||||++++..++.. ...++++..|++..+.+.++.+
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~~~~~~~vli~~p~~~l~~q~~~~~ 56 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAF 56 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHT
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHHHhhhcCceeeeeecchhHHHHHHHHh
Confidence 5689999999999999998877665543 3357899999998877766543
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.31 E-value=9.1e-12 Score=131.82 Aligned_cols=63 Identities=13% Similarity=0.054 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHH---HcCCCcEEEecchHHHHHHHHHHHHHHH
Q psy3476 41 AQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLV---QAGFQRIACTQPRRIACISLSKRVAYET 104 (1417)
Q Consensus 41 ~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~il---e~~~~~i~~tqPrr~aa~~~a~rva~e~ 104 (1417)
+.||+++++.+.++ +++|++|||||||+++..++. .....++++..|++.++.|.++++.+-.
T Consensus 11 r~~Q~~~~~~~~~~-n~lv~~pTGsGKT~i~~~~~~~~~~~~~~~il~i~P~~~L~~q~~~~~~~~~ 76 (200)
T d1wp9a1 11 RIYQEVIYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLF 76 (200)
T ss_dssp CHHHHHHHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHB
T ss_pred CHHHHHHHHHHhcC-CeEEEeCCCCcHHHHHHHHHHHHHHhcCCcEEEEcCchHHHHHHHHHHHHhh
Confidence 68999999988754 678999999999986443332 2334679999999999999888776654
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.31 E-value=8.5e-14 Score=157.00 Aligned_cols=162 Identities=9% Similarity=-0.051 Sum_probs=126.2
Q ss_pred hhhhHHHhhhccccccCCC-cccccccHHHHhhhhcCCccchhhcc----hHHHHHHHHHhcCCCcccCCCCCCCCccch
Q psy3476 795 EEEEEEEEGERLESRTGPG-VCYRLYSEEQYSLLAEYSTPEIRRVS----IDSLLLSLVCMGLGDVRKFPFLEAPPAENI 869 (1417)
Q Consensus 795 ~s~~~~~qR~~~agR~~pG-~CyRLyt~~~~~~l~~~~~PEI~r~~----L~~~vL~lk~~g~~~~~~f~~l~~P~~~~l 869 (1417)
+|++.|.||+||+||+.+| .||.+|+.. +.+...+++++++ |+++.+.++.+|..+...|+|+++|+.+..
T Consensus 129 ~~~~~~~qr~gr~gr~~~~~~~~~~y~~~----~~~d~~~~~~~te~~i~l~~i~l~~~~~g~~~~~e~~~~~~p~g~~~ 204 (299)
T d1yksa2 129 ISASSAAQRRGRIGRNPNRDGDSYYYSEP----TSENNAHHVCWLEASMLLDNMEVRGGMVAPLYGVEGTKTPVSPGEMR 204 (299)
T ss_dssp CCHHHHHHHHTTSSCCTTCCCEEEEECSC----CCCCCTTBHHHHHHHHHHTTSCCGGGCCCCCSTTHHHHSSSCTTTTC
T ss_pred cCHHHHHHhcccccccCCCceEEEEeCCC----CCCcccchhhhhhHHHHhhCcccccccccccchhhhccccCCCchhh
Confidence 7899999999999999554 255555542 3333444444444 444456778889989999999999999888
Q ss_pred HHHHHHHhhccccccccccchhhhhcccCCCCccccchhhhcccccchhhHHHHHHhhccccccchhhhccc-ccccCCC
Q psy3476 870 ESSVRSLTQHGAIDSKERVTTLGRFLSDLPVDIPLGKMLVFGSMFHQIDTMLLLDLALNFGAIDSKERVTSL-GRFLSDL 948 (1417)
Q Consensus 870 ~~A~~~L~~lgald~~~~lT~lG~~l~~lPvdp~lak~Ll~~~~~~cl~~~l~i~a~ls~~~~~~~~~~~~~-~~~~~~~ 948 (1417)
..+...+..+|||+..+..|++|..++..++.+...+++.++ +++... ..+....
T Consensus 205 L~~~~~l~~l~aL~~~d~p~~La~~va~~~~~~~~~~~~f~~------------------------P~e~~i~~~~~~~~ 260 (299)
T d1yksa2 205 LRDDQRKVFRELVRNCDLPVWLSWQVAKAGLKTNDRKWCFEG------------------------PEEHEILNDSGETV 260 (299)
T ss_dssp CCHHHHHHHHHHHHTTCCCHHHHHHHHHTTCCTTCCGGGSCS------------------------CGGGCCBCTTSCBC
T ss_pred hhHhHHHHHHHHHhhcCCCcchHHHHHhcccccccccceeEC------------------------chhchhhhhhcccc
Confidence 889999999999998888899999999999998888776433 333333 3334456
Q ss_pred CccCCCCCccccccccc---cchhhHHHHhhhhccccch
Q psy3476 949 PVDIPLGKMLVFGSMFH---QIDTMLLLDLALNFGAIDS 984 (1417)
Q Consensus 949 ~f~~~~gd~lt~l~~~~---~~~~~~c~~~~l~~~~~~~ 984 (1417)
.|-.+.|||++|+++|. .++..||.+||+++.+||+
T Consensus 261 ~f~~~~Gd~~~L~~r~~D~R~~sd~~~l~nFiq~a~~rR 299 (299)
T d1yksa2 261 KCRAPGGAKKPLRPRWCDERVSSDQSALSEFIKFAEGRR 299 (299)
T ss_dssp EEECTTSCEEECCCSSEEGGGSSSHHHHHHHHHHHTTTC
T ss_pred ceeCCCcceeeeeeeEecccccCcHHHHHHHHHHHhcCC
Confidence 89999999999999984 4588999999999999885
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.31 E-value=3.3e-12 Score=139.50 Aligned_cols=63 Identities=13% Similarity=0.105 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHc--CCCcEEEecchHHHHHHHHHHHHHH
Q psy3476 41 AQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQA--GFQRIACTQPRRIACISLSKRVAYE 103 (1417)
Q Consensus 41 ~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~--~~~~i~~tqPrr~aa~~~a~rva~e 103 (1417)
+.+|++.+..+.+++.++|+||||||||+....+++.. ...+++++.|+|.++.|.++++.+-
T Consensus 45 ~~~Q~~~i~~~l~g~~~~i~apTGsGKT~~~~~~~~~~~~~~~rvliv~Pt~~La~Q~~~~l~~~ 109 (237)
T d1gkub1 45 RAIQKMWAKRILRKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKY 109 (237)
T ss_dssp CHHHHHHHHHHHTTCCEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCEEEEecCCChHHHHHHHHHHHHHHhcCeEEEEeccHHHHHHHHHHHHHH
Confidence 78999999999999999999999999998766655543 2358999999999999998877543
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.30 E-value=4.5e-13 Score=148.24 Aligned_cols=104 Identities=18% Similarity=0.230 Sum_probs=85.6
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHH----------HHHhccCCCCCceEEEecchhhc--
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQ----------DRVFHYAPEGLRKCIVSTNIAET-- 492 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR----------~~v~~~f~~G~rkVLVATnIae~-- 492 (1417)
++++||||+++++++.+++.|++ .++.+..+||+++++.| ..+++.|..|+.+++|+|+++++
T Consensus 36 ggk~LVFcnSR~~aE~La~~L~~-----~Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~G~~dvVVaT~~~a~g~ 110 (299)
T d1a1va2 36 GGRHLIFCHSKKKCDELAAKLVA-----LGINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVTQT 110 (299)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHH-----TTCCEEEECTTSCGGGSCSSSSEEEEECTTC---CCCCBSEEEECCEEEEEE
T ss_pred CCCEEEECCcHHHHHHHHHHHHH-----CCCCEEEEeCCchHHHHHhccchHHHHHHHHHHHhcCCCcEEEEEeehhccC
Confidence 67899999999999999999987 67889999999999876 45778889999999999999999
Q ss_pred -cCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCCeEEEec
Q psy3476 493 -SITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPGVCYRLY 551 (1417)
Q Consensus 493 -GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G~cy~L~ 551 (1417)
++|++.+..||+ ||.|. |.++|.||+||+||..+|.++.+.
T Consensus 111 ~giDid~V~~VI~--------~d~P~----------SvesyIQRiGRTGRGr~G~~~~l~ 152 (299)
T d1a1va2 111 VDFSLDPTFTIET--------TTLPQ----------DAVSRTQRRGRTGRGKPGIYRFVA 152 (299)
T ss_dssp EECCCSSSCEEEE--------EEEEC----------BHHHHHHHHTTBCSSSCEEEEESC
T ss_pred CCCCCCcceEEEe--------CCCCC----------CHHHHHhhccccCCCCCceEEEEe
Confidence 677888888998 77665 555666999999994488776444
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.21 E-value=2.1e-13 Score=150.58 Aligned_cols=100 Identities=12% Similarity=0.098 Sum_probs=83.5
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEec----chhhccCCcCC-e
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVST----NIAETSITIDG-I 499 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVAT----nIae~GIdIP~-V 499 (1417)
++++||||++++.++.+++.|.. .+||++++++|.++++.|++|+.+||||| +++++|||+|+ |
T Consensus 25 ~~~~iif~~~~~~~~~l~~~l~~-----------~~hg~~~~~~R~~~~~~f~~g~~~vLVaT~a~~~v~~rGlDip~~v 93 (248)
T d1gkub2 25 GTGGIIYARTGEEAEEIYESLKN-----------KFRIGIVTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERI 93 (248)
T ss_dssp CSCEEEEESSHHHHHHHHHTTTT-----------SSCEEECTTSSSHHHHHHHHTSCSEEEEECC------CCSCCTTTC
T ss_pred CCCEEEEECCHHHHHHHHHHHHH-----------hccCCCCHHHHHHHHHHHHhCCCeEEEEeccccchhhhccCccccc
Confidence 45799999999999999998864 28999999999999999999999999999 89999999996 9
Q ss_pred EEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCHHHHH
Q psy3476 500 RFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSEEQYS 557 (1417)
Q Consensus 500 ~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~~~~~ 557 (1417)
++||+ ||.|. |. ||.||+||.| .|.++.++...+..
T Consensus 94 ~~VI~--------~d~P~----~~----------~r~gR~~R~g~~~~~~~~~~~~~~~ 130 (248)
T d1gkub2 94 RFAVF--------VGCPS----FR----------VTIEDIDSLSPQMVKLLAYLYRNVD 130 (248)
T ss_dssp CEEEE--------ESCCE----EE----------EECSCGGGSCHHHHHHHHTTTSCHH
T ss_pred cEEEE--------eCCCc----ch----------hhhhhhhccCcceEeeeeccHhhHH
Confidence 99999 99884 55 9999999999 68877666554433
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.18 E-value=1.2e-11 Score=131.98 Aligned_cols=60 Identities=23% Similarity=0.150 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCCCcEEEecchHHHHHHHHHHHH
Q psy3476 41 AQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRVA 101 (1417)
Q Consensus 41 ~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~~~i~~tqPrr~aa~~~a~rva 101 (1417)
+++|.++++++.+++++++++|||||||..+..+++.. ..++++..|++.++.+.++.+.
T Consensus 27 rp~Q~~ai~~~l~g~~vlv~apTGsGKT~~~~~~~~~~-~~~~~~v~P~~~L~~q~~~~l~ 86 (206)
T d1oywa2 27 RPGQEEIIDTVLSGRDCLVVMPTGGGKSLCYQIPALLL-NGLTVVVSPLISLMKDQVDQLQ 86 (206)
T ss_dssp CTTHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHS-SSEEEEECSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCCEEEEcCCCCCCcchhhhhhhhc-cCceEEeccchhhhhhHHHHHH
Confidence 45799999999999999999999999998766555543 4578888899988888877663
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.14 E-value=1.2e-12 Score=139.59 Aligned_cols=101 Identities=22% Similarity=0.276 Sum_probs=85.2
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecchhhccCCcCCeEEEE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNIAETSITIDGIRFVV 503 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnIae~GIdIP~V~~VI 503 (1417)
.+.++|||+.+.+.++.+++.+. +..+||+++.++|..+++.|++|+.+|||||+++++|||+|++++||
T Consensus 92 ~~~k~lvf~~~~~~~~~l~~~l~----------~~~i~g~~~~~~R~~~l~~F~~~~~~vLv~~~~~~~Gidl~~~~~vi 161 (200)
T d2fwra1 92 RKDKIIIFTRHNELVYRISKVFL----------IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGV 161 (200)
T ss_dssp SSSCBCCBCSCHHHHHHHHHHTT----------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEE
T ss_pred CCCcEEEEeCcHHHHHHHHhhcC----------cceeeCCCCHHHHHHHHHHhhcCCeeeeeecchhhcccCCCCCCEEE
Confidence 45789999999999988877652 33579999999999999999999999999999999999999999999
Q ss_pred cCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCCCC----eEEEecC
Q psy3476 504 DSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTGPG----VCYRLYS 552 (1417)
Q Consensus 504 dsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g~G----~cy~L~t 552 (1417)
. ||++.+.. ++.||+||++|.|+| ..|.|++
T Consensus 162 ~--------~~~~~s~~----------~~~Q~iGR~~R~~~~k~~~~i~~~v~ 196 (200)
T d2fwra1 162 I--------MSGSGSAR----------EYIQRLGRILRPSKGKKEAVLYELIS 196 (200)
T ss_dssp E--------ECCSSCCH----------HHHHHHHHSBCCCTTTCCEEEEEEEE
T ss_pred E--------eCCCCCHH----------HHHHHHHhcCCCCCCCcEEEEEEEec
Confidence 8 88776544 455999999999864 3455543
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.98 E-value=9.8e-10 Score=117.28 Aligned_cols=64 Identities=14% Similarity=0.179 Sum_probs=51.2
Q ss_pred cCCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcCCCcEEEecchHHHHHHHHHHH
Q psy3476 36 NSLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAGFQRIACTQPRRIACISLSKRV 100 (1417)
Q Consensus 36 ~~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~~~~i~~tqPrr~aa~~~a~rv 100 (1417)
..+++++||+++++.+.+++..+|.+|||+|||.++...+.+. ..++++..|++.++.|..+.+
T Consensus 67 ~~~~Lr~yQ~eav~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~-~~~~Liv~p~~~L~~q~~~~~ 130 (206)
T d2fz4a1 67 AEISLRDYQEKALERWLVDKRGCIVLPTGSGKTHVAMAAINEL-STPTLIVVPTLALAEQWKERL 130 (206)
T ss_dssp CCCCCCHHHHHHHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS-CSCEEEEESSHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHhCCCcEEEeCCCCCceehHHhHHHHh-cCceeEEEcccchHHHHHHHH
Confidence 4577899999999999999999999999999998766555444 456777779887766666544
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=98.77 E-value=9.9e-09 Score=114.69 Aligned_cols=66 Identities=14% Similarity=0.108 Sum_probs=53.3
Q ss_pred CCCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHH---HHHcCCCcEEEecchHHHHHHHHHHHHH
Q psy3476 37 SLPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQY---LVQAGFQRIACTQPRRIACISLSKRVAY 102 (1417)
Q Consensus 37 ~lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~---ile~~~~~i~~tqPrr~aa~~~a~rva~ 102 (1417)
.+.++.||.+++..+.+++..++.+|||+|||.++... +.+....++++..|++.++.|.++.+.+
T Consensus 111 ~~~~rdyQ~~av~~~l~~~~~il~~pTGsGKT~i~~~i~~~~~~~~~~k~Liivp~~~Lv~Q~~~~f~~ 179 (282)
T d1rifa_ 111 RIEPHWYQKDAVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVD 179 (282)
T ss_dssp ECCCCHHHHHHHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHhcCCceeEEEcccCccHHHHHHHHHhhhcccceEEEEEcCchhHHHHHHHHHH
Confidence 45678999999999998999999999999999764433 3355557899999999888888877654
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.67 E-value=7.5e-08 Score=105.92 Aligned_cols=73 Identities=23% Similarity=0.328 Sum_probs=54.4
Q ss_pred HHHHhcCCCc--HHHHHHHHHHHh----cCC--eEEEEcCCCcchhHHHHHHHHH---cCCCcEEEecchHHHHHHHHHH
Q psy3476 31 IRETQNSLPV--AQYKQEIIDTVL----KER--VVIIAGDTGCGKSTQIPQYLVQ---AGFQRIACTQPRRIACISLSKR 99 (1417)
Q Consensus 31 ~~~~r~~lp~--~~~q~~il~~i~----~~~--~~iI~a~TGsGKTt~ipq~ile---~~~~~i~~tqPrr~aa~~~a~r 99 (1417)
..++..+||. ..-|+++++.|. ++. +.+++|+||||||......++. .| .++++..|+.+.|.|..++
T Consensus 73 ~~~f~~~LPFeLT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g-~q~~~m~Pt~~La~Qh~~~ 151 (264)
T d1gm5a3 73 AEEFIKSLPFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAG-FQTAFMVPTSILAIQHYRR 151 (264)
T ss_dssp HHHHHHHSSSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHT-SCEEEECSCHHHHHHHHHH
T ss_pred HHHHHhhccccCCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhcc-cceeEEeehHhhhHHHHHH
Confidence 3455566664 788888777764 333 6799999999999876655443 34 4788889999999999998
Q ss_pred HHHHH
Q psy3476 100 VAYET 104 (1417)
Q Consensus 100 va~e~ 104 (1417)
+.+.+
T Consensus 152 ~~~~f 156 (264)
T d1gm5a3 152 TVESF 156 (264)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 87766
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=98.62 E-value=5.1e-07 Score=97.37 Aligned_cols=73 Identities=14% Similarity=0.167 Sum_probs=51.4
Q ss_pred HHHhcCCCc--HHHHHHH----HHHHhcCC--eEEEEcCCCcchhHHHHHHHHHcC--CCcEEEecchHHHHHHHHHHHH
Q psy3476 32 RETQNSLPV--AQYKQEI----IDTVLKER--VVIIAGDTGCGKSTQIPQYLVQAG--FQRIACTQPRRIACISLSKRVA 101 (1417)
Q Consensus 32 ~~~r~~lp~--~~~q~~i----l~~i~~~~--~~iI~a~TGsGKTt~ipq~ile~~--~~~i~~tqPrr~aa~~~a~rva 101 (1417)
.+.-..+|. ..-|+.+ .+.+.++. +.+|+|+||||||......+.... ..++++..|+.++|.|..+++.
T Consensus 46 ~~~~~~lP~~lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l~Pt~~La~Q~~~~~~ 125 (233)
T d2eyqa3 46 QLFCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFR 125 (233)
T ss_dssp HHHHHTCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHH
T ss_pred HhhhhccccccchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEEccHHHhHHHHHHHHH
Confidence 333455665 3345544 44445544 789999999999998777666532 3578888999999999998886
Q ss_pred HHH
Q psy3476 102 YET 104 (1417)
Q Consensus 102 ~e~ 104 (1417)
+.+
T Consensus 126 ~~~ 128 (233)
T d2eyqa3 126 DRF 128 (233)
T ss_dssp HHS
T ss_pred HHH
Confidence 653
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=98.33 E-value=2.6e-07 Score=105.79 Aligned_cols=110 Identities=16% Similarity=0.250 Sum_probs=91.7
Q ss_pred CCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCc---eEEEecchhhccCCcCCeE
Q psy3476 424 ERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLR---KCIVSTNIAETSITIDGIR 500 (1417)
Q Consensus 424 ~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~r---kVLVATnIae~GIdIP~V~ 500 (1417)
.+.++|||+......+.+.+.|.. .++....+||+++..+|..+.+.|.++.. -+|++|.+++.|+|+.+.+
T Consensus 117 ~g~KvlIFs~~~~~ld~l~~~l~~-----~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLls~~agg~GlnL~~a~ 191 (346)
T d1z3ix1 117 TSDKVVLVSNYTQTLDLFEKLCRN-----RRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGAN 191 (346)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHH-----HTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEE
T ss_pred cCCceeEEeehhhhhHHHHHHHhh-----hhccccccccchhHHHHHHHHHhhhcccccceeeeecchhhhhccccccce
Confidence 356899999999999988888876 56889999999999999999999977643 3788999999999999999
Q ss_pred EEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHHHH
Q psy3476 501 FVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEEQY 556 (1417)
Q Consensus 501 ~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~~~ 556 (1417)
.||. ||++-+ .+...|+.||+-|.| +-.+|+|+++...
T Consensus 192 ~vi~--------~d~~wn----------p~~~~Qa~~R~~R~GQ~~~V~v~rli~~~Ti 232 (346)
T d1z3ix1 192 RLVM--------FDPDWN----------PANDEQAMARVWRDGQKKTCYIYRLLSTGTI 232 (346)
T ss_dssp EEEE--------CSCCSS----------HHHHHHHHTTSSSTTCCSCEEEEEEEETTSH
T ss_pred EEEE--------ecCCCc----------cchHhHhhhcccccCCCCceEEEEEEeCCCH
Confidence 9998 877554 455559999999998 4567888876543
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.31 E-value=2.8e-07 Score=100.27 Aligned_cols=122 Identities=21% Similarity=0.182 Sum_probs=84.4
Q ss_pred HHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCC-ceEE-Eec
Q psy3476 410 IRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGL-RKCI-VST 487 (1417)
Q Consensus 410 ~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~-rkVL-VAT 487 (1417)
..+.+.+.+.. ..+.++|||+.....++.+...+... .+..+..+||+++.++|..+.+.|.++. .+|+ ++|
T Consensus 72 ~~l~~~l~~~~--~~g~kviIFs~~~~~~~~l~~~l~~~----~~~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vll~~~ 145 (244)
T d1z5za1 72 IRTMEIIEEAL--DEGDKIAIFTQFVDMGKIIRNIIEKE----LNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSV 145 (244)
T ss_dssp HHHHHHHHHHH--HTTCCEEEEESCHHHHHHHHHHHHHH----HCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEEC
T ss_pred HHHHHHHHhhc--ccccceEEEeeceehHHHHHHHHHhh----ccceEEEEecccchhccchhhhhhhccccchhccccc
Confidence 34445554433 24678999999999998887777652 2456778999999999999999997653 4554 566
Q ss_pred chhhccCCcCCeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC---CCeEEEecCHHH
Q psy3476 488 NIAETSITIDGIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG---PGVCYRLYSEEQ 555 (1417)
Q Consensus 488 nIae~GIdIP~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g---~G~cy~L~t~~~ 555 (1417)
..+..|+|++..++||. ||++-+...+. |+.||+-|.| +-.+|+|++...
T Consensus 146 ~~~g~Glnl~~a~~vi~--------~~~~wn~~~~~----------Qa~~R~~R~Gq~~~v~i~~l~~~~T 198 (244)
T d1z5za1 146 KAGGFGINLTSANRVIH--------FDRWWNPAVED----------QATDRVYRIGQTRNVIVHKLISVGT 198 (244)
T ss_dssp CTTCCCCCCTTCSEEEE--------CSCCSCTTTC------------------------CCEEEEEEETTS
T ss_pred cccccccccchhhhhhh--------cCchhhhHHHh----------hhcceeeecCCCCceEEEEEeeCCC
Confidence 89999999999999998 88877666666 9999999987 577888876653
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.28 E-value=4.4e-07 Score=92.88 Aligned_cols=118 Identities=21% Similarity=0.264 Sum_probs=83.5
Q ss_pred HHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecc
Q psy3476 409 YIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488 (1417)
Q Consensus 409 ~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATn 488 (1417)
+..+++.+.+.+ ..+.+||||+.|.+..+.+++.|.+ .++....|++....++-..+-++...| .|.||||
T Consensus 20 ~~AIi~eV~~~~--~~grPVLIgT~SIe~SE~ls~~L~~-----~gi~h~vLnAk~~~~Ea~II~~Ag~~g--~VtIATN 90 (175)
T d1tf5a4 20 FKAVAEDVAQRY--MTGQPVLVGTVAVETSELISKLLKN-----KGIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATN 90 (175)
T ss_dssp HHHHHHHHHHHH--HHTCCEEEEESCHHHHHHHHHHHHT-----TTCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEET
T ss_pred HHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHH-----cCCCceeehhhhHHHHHHHHHhccCCC--ceeehhh
Confidence 345555555443 3367999999999999999999987 567777888887655555555554444 6999999
Q ss_pred hhhccCCcC--------CeEEEEcCCcccceecccCCCccccceeecCHhhHHhhcCcCCCCC-CCeEEEecCH
Q psy3476 489 IAETSITID--------GIRFVVDSGKVKEMSYDVTAKMSTLQEFWISKASAEQRKGRAGRTG-PGVCYRLYSE 553 (1417)
Q Consensus 489 Iae~GIdIP--------~V~~VIdsG~~k~~~yD~~~~~~~l~~~~ISkasa~QR~GRAGR~g-~G~cy~L~t~ 553 (1417)
.|.+|.||. +=-+||-+- .+-|..--.|-.||+||.| ||.+-.+++-
T Consensus 91 mAGRGtDikl~~~v~~~GGLhVI~t~------------------~~~s~Rid~Ql~GR~gRQGdpGs~~~~~sl 146 (175)
T d1tf5a4 91 MAGRGTDIKLGEGVKELGGLAVVGTE------------------RHESRRIDNQLRGRSGRQGDPGITQFYLSM 146 (175)
T ss_dssp TSSTTCCCCCCTTSGGGTSEEEEESS------------------CCSSHHHHHHHHTTSSGGGCCEEEEEEEET
T ss_pred HHHcCCCccchHHHHhCCCcEEEEec------------------cCcchhHHHHHhcchhhhCCCcccEEEEEc
Confidence 999999885 222444321 1234455569999999999 8887655543
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.54 E-value=8.1e-05 Score=77.26 Aligned_cols=79 Identities=19% Similarity=0.233 Sum_probs=60.6
Q ss_pred HHHHHHHHHhhCCCCCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecc
Q psy3476 409 YIRILSIIDKKYPRTERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN 488 (1417)
Q Consensus 409 ~~~il~~l~~~~~~~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATn 488 (1417)
+..+++.+.+.+ ..+.+|||...+.+..+.+++.|.+ .++..-.|++.-...|-..|-++-+.| .|-||||
T Consensus 20 ~~Avv~ei~~~h--~~GqPVLVGT~SVe~SE~lS~lL~~-----~gi~h~vLNAK~herEAeIIAqAG~~G--aVTIATN 90 (219)
T d1nkta4 20 YIAVVDDVAERY--AKGQPVLIGTTSVERSEYLSRQFTK-----RRIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATN 90 (219)
T ss_dssp HHHHHHHHHHHH--HTTCCEEEEESCHHHHHHHHHHHHH-----TTCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEET
T ss_pred HHHHHHHHHHHH--hcCCCEEEeeCcHHHHHHHHHHHHH-----hccchhccchhhHHHHHHHHHhcccCC--cEEeecc
Confidence 455666666655 3467999999999999999999988 567777888875544444555554444 5899999
Q ss_pred hhhccCCc
Q psy3476 489 IAETSITI 496 (1417)
Q Consensus 489 Iae~GIdI 496 (1417)
.|.||.||
T Consensus 91 MAGRGTDI 98 (219)
T d1nkta4 91 MAGRGTDI 98 (219)
T ss_dssp TCSTTCCC
T ss_pred ccCCCCce
Confidence 99999999
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=96.91 E-value=0.00096 Score=75.89 Aligned_cols=63 Identities=24% Similarity=0.409 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHH---HHHc---CCCcEEEecchHHHHHHHHHHHHHH
Q psy3476 41 AQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQY---LVQA---GFQRIACTQPRRIACISLSKRVAYE 103 (1417)
Q Consensus 41 ~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~---ile~---~~~~i~~tqPrr~aa~~~a~rva~e 103 (1417)
...|.+++.....+++++|+|+.||||||.+... +.+. ...+|+++.|+-.||..+.+.+...
T Consensus 150 ~~~Q~~A~~~al~~~~~vI~G~pGTGKTt~i~~~l~~l~~~~~~~~~~I~l~ApTgkAA~~L~e~~~~~ 218 (359)
T d1w36d1 150 INWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKA 218 (359)
T ss_dssp CCHHHHHHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHH
T ss_pred ccHHHHHHHHHHcCCeEEEEcCCCCCceehHHHHHHHHHHHHhccCCeEEEecCcHHHHHHHHHHHHHH
Confidence 4568888888889999999999999999976543 3332 2247999999999988777765443
|
| >d1z3ix2 c.37.1.19 (X:92-389) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=96.31 E-value=0.016 Score=63.43 Aligned_cols=51 Identities=16% Similarity=0.265 Sum_probs=35.9
Q ss_pred cHHHHHHHHHHHh---------cCCeEEEEcCCCcchhHHHHHHH---HHcCC------CcEEEecchH
Q psy3476 40 VAQYKQEIIDTVL---------KERVVIIAGDTGCGKSTQIPQYL---VQAGF------QRIACTQPRR 90 (1417)
Q Consensus 40 ~~~~q~~il~~i~---------~~~~~iI~a~TGsGKTt~ipq~i---le~~~------~~i~~tqPrr 90 (1417)
+..||.+.+..+. .+.-+|++=++|.|||.|+..++ ++.+. .+++|..|.-
T Consensus 56 Lr~hQ~~gv~~l~~~~~~~~~~~~~g~iLaDemGlGKT~qaia~l~~l~~~~~~~~~~~~~~LIV~P~s 124 (298)
T d1z3ix2 56 LRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPSS 124 (298)
T ss_dssp CCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECHH
T ss_pred ccHHHHHHHHHHHHHHHhhhhccCCceEEEeCCCCCHHHHHHHHHHHHHHhcccccCCCCcEEEEccch
Confidence 5789999988652 34567888899999998876544 33321 3578888864
|
| >d1z63a1 c.37.1.19 (A:432-661) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.06 E-value=0.011 Score=62.22 Aligned_cols=53 Identities=15% Similarity=0.137 Sum_probs=35.8
Q ss_pred CcHHHHHHHHHHH----hcCCeEEEEcCCCcchhHHHHHHHHH---c-CCCcEEEecchHH
Q psy3476 39 PVAQYKQEIIDTV----LKERVVIIAGDTGCGKSTQIPQYLVQ---A-GFQRIACTQPRRI 91 (1417)
Q Consensus 39 p~~~~q~~il~~i----~~~~~~iI~a~TGsGKTt~ipq~ile---~-~~~~i~~tqPrr~ 91 (1417)
.+++||.+.+..+ ..+.-+|+.-++|.|||.++..++.. . ...++++..|..+
T Consensus 12 ~L~~yQ~~~v~~~~~~~~~~~g~iLaDe~GlGKT~~~i~~~~~~~~~~~~~~~LIv~p~~l 72 (230)
T d1z63a1 12 NLRPYQIKGFSWMRFMNKLGFGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPLSV 72 (230)
T ss_dssp CCCHHHHHHHHHHHHHHHTTCCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECSTT
T ss_pred chhHHHHHHHHHHHHhhhcCCCEEEEeCCCCChHHHHHHhhhhhhhcccccccceecchhh
Confidence 4678998887654 34556788889999999987655432 2 2346666666533
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=95.10 E-value=0.01 Score=64.37 Aligned_cols=64 Identities=19% Similarity=0.283 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHH---HHHHc-CC--CcEEEecchHHHHHHHHHHHHHHHcc
Q psy3476 41 AQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQ---YLVQA-GF--QRIACTQPRRIACISLSKRVAYETLS 106 (1417)
Q Consensus 41 ~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq---~ile~-~~--~~i~~tqPrr~aa~~~a~rva~e~~~ 106 (1417)
.+.|+++++. ....++|.|+.||||||.+.. ++++. +. .+|+|+.+++.||..+..++.+..+.
T Consensus 3 ~~eQ~~av~~--~~~~~lI~g~aGTGKTt~l~~rv~~ll~~~~~~~~~ILvlt~tn~a~~~i~~~~~~~~~~ 72 (306)
T d1uaaa1 3 NPGQQQAVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGR 72 (306)
T ss_dssp CHHHHHHHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCT
T ss_pred CHHHHHHHhC--CCCCEEEEeeCCccHHHHHHHHHHHHHHhcCCChhHEEEEeCcHHHHHHHHHHHHHhcCc
Confidence 3568888865 346689999999999987653 34433 33 48999999999999988888776543
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=94.71 E-value=0.023 Score=62.25 Aligned_cols=65 Identities=20% Similarity=0.219 Sum_probs=48.9
Q ss_pred cHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHH---HHHcC-C--CcEEEecchHHHHHHHHHHHHHHHcc
Q psy3476 40 VAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQY---LVQAG-F--QRIACTQPRRIACISLSKRVAYETLS 106 (1417)
Q Consensus 40 ~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~---ile~~-~--~~i~~tqPrr~aa~~~a~rva~e~~~ 106 (1417)
+...|+++++.. ...++|.|+.||||||.+..- ++..+ . .+|+++.+++.++..+..++......
T Consensus 12 L~~eQ~~~v~~~--~g~~lV~g~aGSGKTt~l~~ri~~ll~~~~~~p~~il~lt~t~~aa~~~~~~~~~~~~~ 82 (318)
T d1pjra1 12 LNKEQQEAVRTT--EGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGG 82 (318)
T ss_dssp SCHHHHHHHHCC--SSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGG
T ss_pred CCHHHHHHHhCC--CCCEEEEecCCccHHHHHHHHHHHHHHcCCCCHHHeEeEeccHHHHHHHHHHHHhhccc
Confidence 456788888853 456889999999999976543 33333 2 47999999999999999988776543
|
| >d1tf5a3 c.37.1.19 (A:1-226,A:349-395) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=94.34 E-value=0.012 Score=63.12 Aligned_cols=95 Identities=18% Similarity=0.085 Sum_probs=51.4
Q ss_pred CCcHHHHHHHHHHHhcCCeEEEEcCCCcchhHHHHHH--HHHcCCCcE-EEecchHHHHHHHHHHHHHHHc---cccCCe
Q psy3476 38 LPVAQYKQEIIDTVLKERVVIIAGDTGCGKSTQIPQY--LVQAGFQRI-ACTQPRRIACISLSKRVAYETL---SQYSNL 111 (1417)
Q Consensus 38 lp~~~~q~~il~~i~~~~~~iI~a~TGsGKTt~ipq~--ile~~~~~i-~~tqPrr~aa~~~a~rva~e~~---~~~g~~ 111 (1417)
|-+..+--+++-.+.-++--|....||-|||..+..+ +....-..+ ++|.-- . +|+|=|++++ +-+|-+
T Consensus 77 lG~RhyDVQLiGgi~L~~G~iaem~TGEGKTL~a~l~a~l~al~g~~vhvvTvNd-y----LA~RDae~m~~iy~~lGls 151 (273)
T d1tf5a3 77 TGMFPFKVQLMGGVALHDGNIAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNE-Y----LASRDAEQMGKIFEFLGLT 151 (273)
T ss_dssp HSCCCCHHHHHHHHHHHTTSEEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSH-H----HHHHHHHHHHHHHHHTTCC
T ss_pred hceEEehhHHHHHHHHHhhhheeecCCCcchhHHHHHHHHHHhcCCCceEEecCc-c----ccchhhhHHhHHHHHcCCC
Confidence 3344444445544443333488999999999764433 333222333 444332 2 3444444443 467889
Q ss_pred EEEEEeeccc----ccCCccEEEEccchhH
Q psy3476 112 VGYQIRFEKH----RREKTKIVFITEGLLL 137 (1417)
Q Consensus 112 vGy~ir~e~~----~~~~t~I~~~T~g~ll 137 (1417)
||+....... ..-.+.|+|+|+.-+-
T Consensus 152 vg~~~~~~~~~~r~~~Y~~di~Ygt~~e~~ 181 (273)
T d1tf5a3 152 VGLNLNSMSKDEKREAYAADITYSTNNELG 181 (273)
T ss_dssp EEECCTTSCHHHHHHHHHSSEEEEEHHHHH
T ss_pred ccccccccCHHHHHHHhhCCceecchhhhh
Confidence 9975432111 1124679999986544
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=93.14 E-value=0.0029 Score=61.00 Aligned_cols=48 Identities=19% Similarity=0.270 Sum_probs=43.2
Q ss_pred cccccccchHHHHHHHhhhccccchhHHHHHHhhccchhhhHhhhhcc
Q psy3476 1118 ADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSAT 1165 (1417)
Q Consensus 1118 ~~~~ls~~t~~iide~her~~~~d~ll~~l~~~~~~~~~lk~ilmsat 1165 (1417)
.+..++.++++|+||+|+-...++..+..+++.++.+++.++++||||
T Consensus 88 ~~~~~~~~~~vIiDE~H~~~~~~~~~~~~~l~~~~~~~~~~~l~~TAT 135 (136)
T d1a1va1 88 GGCSGGAYDIIICDECHSTDATSILGIGTVLDQAETAGARLVVLATAT 135 (136)
T ss_dssp TGGGGCCCSEEEEETTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESS
T ss_pred cchhhhcCCEEEEecccccCHHHHHHHHHHHHHHHHCCCCcEEEEeCC
Confidence 345678899999999999988888899999999999999999999998
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.48 E-value=0.044 Score=56.94 Aligned_cols=54 Identities=26% Similarity=0.292 Sum_probs=37.0
Q ss_pred cCCeEEEEcCCCcchhHHHHH---HHHHcCCC-cEEEecchHHHHHHHHHHHHHHHcc
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQ---YLVQAGFQ-RIACTQPRRIACISLSKRVAYETLS 106 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq---~ile~~~~-~i~~tqPrr~aa~~~a~rva~e~~~ 106 (1417)
+.++++++||||+||||.+.. ++...+.. .++.+-+-|.+|..-.+..++.++.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~i 62 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSI 62 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTHHHHHHHHHHHHTC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEeccccccchhhHhhcccccCc
Confidence 356889999999999997543 33334432 2444555688888777777777654
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.99 E-value=0.084 Score=54.50 Aligned_cols=42 Identities=19% Similarity=0.154 Sum_probs=29.1
Q ss_pred CCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEcc
Q psy3476 316 FLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSA 359 (1417)
Q Consensus 316 ~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSA 359 (1417)
...+.+++|+||+| .+..+....+++.+..-+.+..+|+.+-
T Consensus 105 ~~~~~kviIide~d--~l~~~a~n~Llk~lEep~~~~~fIl~t~ 146 (207)
T d1a5ta2 105 RLGGAKVVWVTDAA--LLTDAAANALLKTLEEPPAETWFFLATR 146 (207)
T ss_dssp TTSSCEEEEESCGG--GBCHHHHHHHHHHHTSCCTTEEEEEEES
T ss_pred ccCccceEEechhh--hhhhhhhHHHHHHHHhhcccceeeeeec
Confidence 34567899999999 4555566777777766556666666543
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=91.87 E-value=0.096 Score=54.50 Aligned_cols=52 Identities=25% Similarity=0.285 Sum_probs=36.5
Q ss_pred CeEEEEcCCCcchhHHHHH---HHHHcCCC-cEEEecchHHHHHHHHHHHHHHHcc
Q psy3476 55 RVVIIAGDTGCGKSTQIPQ---YLVQAGFQ-RIACTQPRRIACISLSKRVAYETLS 106 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ipq---~ile~~~~-~i~~tqPrr~aa~~~a~rva~e~~~ 106 (1417)
.+++++||||+||||.+.. ++...+.. .++-+-..|++|..-.+..++.++.
T Consensus 12 ~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i 67 (213)
T d1vmaa2 12 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGA 67 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccccchhHHHHHHhhhcCc
Confidence 3778899999999997543 33444433 3556667899988777777777654
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=91.38 E-value=0.079 Score=58.66 Aligned_cols=40 Identities=33% Similarity=0.418 Sum_probs=27.6
Q ss_pred HHHHHHhcCCeEEEEcCCCcchhHHHHHHHHHcC--CCcEEEe
Q psy3476 46 EIIDTVLKERVVIIAGDTGCGKSTQIPQYLVQAG--FQRIACT 86 (1417)
Q Consensus 46 ~il~~i~~~~~~iI~a~TGsGKTt~ipq~ile~~--~~~i~~t 86 (1417)
-+..+++.+++++|+|+|||||||.+- .++..- ..+|++.
T Consensus 158 ~l~~~v~~~~nili~G~tgSGKTT~l~-al~~~i~~~~rivti 199 (323)
T d1g6oa_ 158 AIKDGIAIGKNVIVCGGTGSGKTTYIK-SIMEFIPKEERIISI 199 (323)
T ss_dssp HHHHHHHHTCCEEEEESTTSSHHHHHH-HHGGGSCTTCCEEEE
T ss_pred HHHHHHHhCCCEEEEeeccccchHHHH-HHhhhcccccceeec
Confidence 345567788999999999999999763 344322 2355554
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=91.27 E-value=0.11 Score=53.92 Aligned_cols=54 Identities=15% Similarity=0.184 Sum_probs=37.2
Q ss_pred cCCeEEEEcCCCcchhHHHHHH---HHHcCCC-cEEEecchHHHHHHHHHHHHHHHcc
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQY---LVQAGFQ-RIACTQPRRIACISLSKRVAYETLS 106 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~---ile~~~~-~i~~tqPrr~aa~~~a~rva~e~~~ 106 (1417)
+.++++++||||+||||.+... +.+.+.. -++.+-.-|.+|..-.+..++.++.
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v 66 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGV 66 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccchHHHHHHHHHHhcCC
Confidence 4557788999999999975533 3344443 2455566789888877777777654
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.24 E-value=0.2 Score=52.54 Aligned_cols=40 Identities=25% Similarity=0.439 Sum_probs=25.4
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
-.++.++||||+| .+..+....+++.+....+...+|+.+
T Consensus 113 ~~~~kviiIde~d--~l~~~~q~~Llk~lE~~~~~~~~il~t 152 (239)
T d1njfa_ 113 RGRFKVYLIDEVH--MLSRHSFNALLKTLEEPPEHVKFLLAT 152 (239)
T ss_dssp SSSSEEEEEETGG--GSCHHHHHHHHHHHHSCCTTEEEEEEE
T ss_pred cCCCEEEEEECcc--cCCHHHHHHHHHHHhcCCCCeEEEEEc
Confidence 3457799999999 345555566666665544555555543
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.16 E-value=0.17 Score=54.32 Aligned_cols=78 Identities=12% Similarity=0.081 Sum_probs=66.3
Q ss_pred CCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecch-hhccCCcCCeEEEE
Q psy3476 425 RGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTNI-AETSITIDGIRFVV 503 (1417)
Q Consensus 425 ~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATnI-ae~GIdIP~V~~VI 503 (1417)
+.++++.+||..-+.+.++.+.++... .++.+..+||+++..+|.+++....+|+.+|||.|-. +...+.+.+..+||
T Consensus 132 g~q~~~m~Pt~~La~Qh~~~~~~~f~~-~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl~~~~~~f~~Lglvi 210 (264)
T d1gm5a3 132 GFQTAFMVPTSILAIQHYRRTVESFSK-FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGLVI 210 (264)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTC-SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCEEE
T ss_pred ccceeEEeehHhhhHHHHHHHHHhhhh-ccccceeeccccchHHHHHHHHHHHCCCCCEEEeehHHhcCCCCccccceee
Confidence 678999999999999888888776543 3678999999999999999999999999999999954 44568888887665
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=91.13 E-value=0.1 Score=54.14 Aligned_cols=53 Identities=19% Similarity=0.334 Sum_probs=32.3
Q ss_pred CCeEEEEcCCCcchhHHHHH---HHHHcCCC-cEEEecchHHHHHHHHHHHHHHHcc
Q psy3476 54 ERVVIIAGDTGCGKSTQIPQ---YLVQAGFQ-RIACTQPRRIACISLSKRVAYETLS 106 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ipq---~ile~~~~-~i~~tqPrr~aa~~~a~rva~e~~~ 106 (1417)
..+++++||||+||||.+.. ++...+.. .++-+-..|++|..-.+..++.++.
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~ga~eQL~~~a~~l~v 68 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGV 68 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHHHTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccccchhHHHHHhccccCc
Confidence 44677899999999997543 33344432 2445556788888777777777654
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=91.01 E-value=0.39 Score=49.01 Aligned_cols=45 Identities=11% Similarity=0.111 Sum_probs=34.7
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCC
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATI 361 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATl 361 (1417)
+...+.+++|||||| .+......++++.+..-+++..+|+.+...
T Consensus 75 ~~~~~~KviIId~ad--~l~~~aqNaLLK~LEEPp~~t~fiLit~~~ 119 (198)
T d2gnoa2 75 PELYTRKYVIVHDCE--RMTQQAANAFLKALEEPPEYAVIVLNTRRW 119 (198)
T ss_dssp CSSSSSEEEEETTGG--GBCHHHHHHTHHHHHSCCTTEEEEEEESCG
T ss_pred cccCCCEEEEEeCcc--ccchhhhhHHHHHHhCCCCCceeeeccCCh
Confidence 445678999999999 556677788888888777777888776554
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=90.70 E-value=0.099 Score=54.30 Aligned_cols=51 Identities=24% Similarity=0.268 Sum_probs=34.2
Q ss_pred CeEEEEcCCCcchhHHHHHHH---HHcCCC-cEEEecchHHHHHHHHHHHHHHHc
Q psy3476 55 RVVIIAGDTGCGKSTQIPQYL---VQAGFQ-RIACTQPRRIACISLSKRVAYETL 105 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ipq~i---le~~~~-~i~~tqPrr~aa~~~a~rva~e~~ 105 (1417)
.+++++||||+||||.+.... ...+.. .++-+-.-|.+|..--+..++.++
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~ 64 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNN 64 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCHHHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccccchhhhhhhhhhcC
Confidence 367789999999999865443 233332 244455568888777776777654
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=90.64 E-value=0.049 Score=53.78 Aligned_cols=18 Identities=33% Similarity=0.680 Sum_probs=16.1
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
|++++|.|++||||||++
T Consensus 1 ~kiI~i~G~~GsGKsT~~ 18 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSS 18 (190)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 689999999999999854
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=90.47 E-value=0.1 Score=59.49 Aligned_cols=39 Identities=26% Similarity=0.445 Sum_probs=28.5
Q ss_pred CCCcHHHHHHHHHHHh--cCCeEEEEcCCCcchhHHHHHHH
Q psy3476 37 SLPVAQYKQEIIDTVL--KERVVIIAGDTGCGKSTQIPQYL 75 (1417)
Q Consensus 37 ~lp~~~~q~~il~~i~--~~~~~iI~a~TGsGKTt~ipq~i 75 (1417)
.|.....|.+.+..+. .+..++|+|||||||||.+-.++
T Consensus 139 ~LG~~~~~~~~l~~l~~~~~GliLvtGpTGSGKSTTl~~~l 179 (401)
T d1p9ra_ 139 SLGMTAHNHDNFRRLIKRPHGIILVTGPTGSGKSTTLYAGL 179 (401)
T ss_dssp GSCCCHHHHHHHHHHHTSSSEEEEEECSTTSCHHHHHHHHH
T ss_pred hhcccHHHHHHHHHHHhhhhceEEEEcCCCCCccHHHHHHh
Confidence 4666677777776665 45689999999999998654433
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=90.32 E-value=0.086 Score=53.40 Aligned_cols=25 Identities=28% Similarity=0.638 Sum_probs=20.7
Q ss_pred HHHhcCCeEEEEcCCCcchhHHHHH
Q psy3476 49 DTVLKERVVIIAGDTGCGKSTQIPQ 73 (1417)
Q Consensus 49 ~~i~~~~~~iI~a~TGsGKTt~ipq 73 (1417)
+.+.+.++++|.||+|||||||+-.
T Consensus 3 ~~~~~~~iI~l~G~pGSGKsT~a~~ 27 (194)
T d3adka_ 3 EKLKKSKIIFVVGGPGSGKGTQCEK 27 (194)
T ss_dssp HHHHTSCEEEEEECTTSSHHHHHHH
T ss_pred ccccCCcEEEEECCCCCCHHHHHHH
Confidence 3567889999999999999996543
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=90.32 E-value=0.064 Score=51.56 Aligned_cols=18 Identities=33% Similarity=0.606 Sum_probs=15.1
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
.++++|+|++||||||++
T Consensus 2 kklIii~G~pGsGKTTla 19 (152)
T d1ly1a_ 2 KKIILTIGCPGSGKSTWA 19 (152)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 357899999999999843
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=90.08 E-value=0.081 Score=50.72 Aligned_cols=16 Identities=44% Similarity=0.783 Sum_probs=14.2
Q ss_pred CCeEEEEcCCCcchhH
Q psy3476 54 ERVVIIAGDTGCGKST 69 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt 69 (1417)
.+++++.|+.||||||
T Consensus 2 ~k~I~l~G~~GsGKST 17 (169)
T d1kaga_ 2 KRNIFLVGPMGAGKST 17 (169)
T ss_dssp CCCEEEECCTTSCHHH
T ss_pred CCeEEEECCCCCCHHH
Confidence 4678999999999998
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=89.71 E-value=0.36 Score=50.67 Aligned_cols=80 Identities=9% Similarity=0.127 Sum_probs=68.0
Q ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhhhhccCCcEEEEecCCCCHHHHHHHhccCCCCCceEEEecc-hhhccCCcCCeEE
Q psy3476 423 TERGDVLIFMSGISEISSIVRAAQEYNEKSQGWIVLPLHSTLSLEEQDRVFHYAPEGLRKCIVSTN-IAETSITIDGIRF 501 (1417)
Q Consensus 423 ~~~g~iLVFl~~~~eie~la~~L~~~~~~~~~~~V~~LHs~Ls~~eR~~v~~~f~~G~rkVLVATn-Iae~GIdIP~V~~ 501 (1417)
..++++++-+|+..-+...++.++++... -+..+..+||.++..+|..+.....+|..+|||.|- .+...+.+++...
T Consensus 102 ~~g~qv~~l~Pt~~La~Q~~~~~~~~~~~-~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~l~~~~~f~~LgL 180 (233)
T d2eyqa3 102 DNHKQVAVLVPTTLLAQQHYDNFRDRFAN-WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLGL 180 (233)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHHSTT-TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEEE
T ss_pred HcCCceEEEccHHHhHHHHHHHHHHHHhh-CCCEEEeccCcccchhHHHHHHHHhCCCCCEEEeehhhhccCCccccccc
Confidence 34789999999999999999888875432 356899999999999999999999999999999996 4455788999987
Q ss_pred EE
Q psy3476 502 VV 503 (1417)
Q Consensus 502 VI 503 (1417)
||
T Consensus 181 iI 182 (233)
T d2eyqa3 181 LI 182 (233)
T ss_dssp EE
T ss_pred ee
Confidence 66
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.61 E-value=0.084 Score=51.73 Aligned_cols=21 Identities=38% Similarity=0.563 Sum_probs=16.9
Q ss_pred CeEEEEcCCCcchhHHHHHHH
Q psy3476 55 RVVIIAGDTGCGKSTQIPQYL 75 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ipq~i 75 (1417)
++++|+||+||||||.+-+++
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~ 22 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKAS 22 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHH
Confidence 678999999999999654443
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=89.34 E-value=0.43 Score=49.17 Aligned_cols=45 Identities=16% Similarity=0.123 Sum_probs=24.2
Q ss_pred CCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEccCC
Q psy3476 317 LSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATI 361 (1417)
Q Consensus 317 L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSATl 361 (1417)
+.+.++++||++|.-.-+.+....+...+......-+.+++|++.
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~ 139 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 139 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCC
Confidence 446789999999933333333334444443333333445555555
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=89.26 E-value=0.059 Score=52.96 Aligned_cols=17 Identities=35% Similarity=0.563 Sum_probs=14.8
Q ss_pred CeEEEEcCCCcchhHHH
Q psy3476 55 RVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~i 71 (1417)
+.++|+|++||||||++
T Consensus 8 K~I~i~G~~GsGKTTla 24 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLV 24 (192)
T ss_dssp EEEEEECCTTSHHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 57899999999999843
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=89.08 E-value=0.069 Score=52.27 Aligned_cols=19 Identities=26% Similarity=0.524 Sum_probs=16.2
Q ss_pred hcCCeEEEEcCCCcchhHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ 70 (1417)
+++++++|+|+.||||||+
T Consensus 4 ~~~~iivl~G~~GsGKsT~ 22 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAV 22 (171)
T ss_dssp TTSEEEEEECSTTSCHHHH
T ss_pred CCCeEEEEECCCCCCHHHH
Confidence 3567899999999999984
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=88.67 E-value=0.11 Score=50.96 Aligned_cols=19 Identities=32% Similarity=0.625 Sum_probs=16.5
Q ss_pred cCCeEEEEcCCCcchhHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~i 71 (1417)
.+++++|.|++||||||+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia 21 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIA 21 (176)
T ss_dssp TTEEEEEEECTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 5778999999999999843
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=88.17 E-value=0.19 Score=48.88 Aligned_cols=18 Identities=33% Similarity=0.630 Sum_probs=16.0
Q ss_pred cCCeEEEEcCCCcchhHH
Q psy3476 53 KERVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ 70 (1417)
+.++++|+|+.||||||+
T Consensus 2 ~~kiI~l~G~~GsGKsTv 19 (178)
T d1qhxa_ 2 TTRMIILNGGSSAGKSGI 19 (178)
T ss_dssp CCCEEEEECCTTSSHHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 468999999999999983
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=88.04 E-value=0.12 Score=49.98 Aligned_cols=16 Identities=50% Similarity=0.825 Sum_probs=14.2
Q ss_pred CeEEEEcCCCcchhHH
Q psy3476 55 RVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ 70 (1417)
+.++|+|++||||||+
T Consensus 3 klI~i~G~~GsGKTTv 18 (176)
T d2bdta1 3 KLYIITGPAGVGKSTT 18 (176)
T ss_dssp EEEEEECSTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 5789999999999984
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.89 E-value=0.11 Score=52.14 Aligned_cols=26 Identities=15% Similarity=0.155 Sum_probs=21.5
Q ss_pred hcCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
..+++++|.||+|||||+...|++..
T Consensus 21 ~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 21 ETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 35789999999999999877776654
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.47 E-value=0.12 Score=51.76 Aligned_cols=18 Identities=44% Similarity=0.772 Sum_probs=16.1
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
++.++|+||.||||||++
T Consensus 2 G~iivl~GpsG~GK~tl~ 19 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVV 19 (182)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 678999999999999854
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=87.07 E-value=0.24 Score=50.52 Aligned_cols=34 Identities=29% Similarity=0.471 Sum_probs=23.1
Q ss_pred cCCeEEEEcCCCcchhHHHHH---HHHHcCCCcEEEe
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQ---YLVQAGFQRIACT 86 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq---~ile~~~~~i~~t 86 (1417)
.++.++|.|+-|||||||+-. .+-+.|...+.++
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~ 37 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFT 37 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEe
Confidence 367899999999999998543 3334455444443
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=86.75 E-value=0.15 Score=53.13 Aligned_cols=27 Identities=19% Similarity=0.279 Sum_probs=23.0
Q ss_pred hcCCeEEEEcCCCcchhHHHHHHHHHc
Q psy3476 52 LKERVVIIAGDTGCGKSTQIPQYLVQA 78 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ipq~ile~ 78 (1417)
..+++++|.||+|||||+...||+.+.
T Consensus 34 p~G~~~li~G~pGsGKT~~~lq~~~~~ 60 (254)
T d1pzna2 34 ETQAITEVFGEFGSGKTQLAHTLAVMV 60 (254)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 356799999999999999888887764
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=85.64 E-value=0.43 Score=46.63 Aligned_cols=17 Identities=41% Similarity=0.860 Sum_probs=14.2
Q ss_pred EEEEcCCCcchhHHHHH
Q psy3476 57 VIIAGDTGCGKSTQIPQ 73 (1417)
Q Consensus 57 ~iI~a~TGsGKTt~ipq 73 (1417)
++|+||+||||||.+-.
T Consensus 3 i~I~G~~G~GKSTLl~~ 19 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKK 19 (178)
T ss_dssp EEEECCTTSSHHHHHHH
T ss_pred EEEECCCCcHHHHHHHH
Confidence 68999999999996433
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=85.49 E-value=0.27 Score=47.81 Aligned_cols=17 Identities=18% Similarity=0.386 Sum_probs=14.7
Q ss_pred cCCeEEEEcCCCcchhH
Q psy3476 53 KERVVIIAGDTGCGKST 69 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt 69 (1417)
.+-++.++|..||||||
T Consensus 5 ~g~~I~l~G~~GsGKTT 21 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDA 21 (183)
T ss_dssp CCEEEEEECSTTSSHHH
T ss_pred CCeEEEEECCCCCCHHH
Confidence 45577899999999998
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=85.45 E-value=0.21 Score=48.44 Aligned_cols=18 Identities=28% Similarity=0.453 Sum_probs=14.8
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
...++|+|+.||||||+.
T Consensus 4 ~~~I~i~G~pGsGKTTia 21 (173)
T d1rkba_ 4 LPNILLTGTPGVGKTTLG 21 (173)
T ss_dssp CCCEEEECSTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 346789999999999843
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.41 E-value=0.19 Score=50.14 Aligned_cols=26 Identities=46% Similarity=0.570 Sum_probs=19.6
Q ss_pred cCCeEEEEcCCCcchhHHHHHHHHHc
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQYLVQA 78 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~ile~ 78 (1417)
...++|++|++||||||.+-+++.+.
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~~~ 38 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLVSA 38 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 34689999999999999765554433
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.15 E-value=0.21 Score=50.29 Aligned_cols=19 Identities=37% Similarity=0.615 Sum_probs=15.8
Q ss_pred CCeEEEEcCCCcchhHHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~ip 72 (1417)
..+++|.||+|||||||+-
T Consensus 8 ~~iI~i~GppGSGKsT~a~ 26 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCE 26 (196)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4578999999999998643
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.08 E-value=0.21 Score=50.10 Aligned_cols=17 Identities=47% Similarity=0.749 Sum_probs=14.7
Q ss_pred eEEEEcCCCcchhHHHH
Q psy3476 56 VVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ip 72 (1417)
+++|.||+|||||||+-
T Consensus 3 iI~i~GppGSGKsT~a~ 19 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCA 19 (194)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 67999999999999653
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=84.99 E-value=0.2 Score=50.26 Aligned_cols=17 Identities=47% Similarity=0.741 Sum_probs=14.8
Q ss_pred CeEEEEcCCCcchhHHH
Q psy3476 55 RVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~i 71 (1417)
.+++|.||.||||||++
T Consensus 7 ~iI~i~G~pGSGKsT~a 23 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 47899999999999854
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=84.91 E-value=0.19 Score=49.01 Aligned_cols=18 Identities=28% Similarity=0.536 Sum_probs=15.0
Q ss_pred CCeEEEEcCCCcchhHHH
Q psy3476 54 ERVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 54 ~~~~iI~a~TGsGKTt~i 71 (1417)
+-+++|.|++||||||+.
T Consensus 5 ~~~I~i~G~~GsGKTT~~ 22 (174)
T d1y63a_ 5 GINILITGTPGTGKTSMA 22 (174)
T ss_dssp SCEEEEECSTTSSHHHHH
T ss_pred CCEEEEEeCCCCCHHHHH
Confidence 346899999999999854
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=84.77 E-value=0.04 Score=51.93 Aligned_cols=51 Identities=22% Similarity=0.186 Sum_probs=38.9
Q ss_pred hhcccccccchHHHHHHHhhhccccchhHHHHHHhhccchhhhHhhhhcccc
Q psy3476 1116 VAADNFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSATIN 1167 (1417)
Q Consensus 1116 ~~~~~~ls~~t~~iide~her~~~~d~ll~~l~~~~~~~~~lk~ilmsat~~ 1167 (1417)
...+..+..+.++|+||+|...-+.+...+.+.... ..++.++++||||-+
T Consensus 90 ~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~~~~~~-~~~~~~~l~lTATPp 140 (140)
T d1yksa1 90 MLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRA-RANESATILMTATPP 140 (140)
T ss_dssp HTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHH-HTTSCEEEEECSSCT
T ss_pred HhccccccceeEEEEccccccChhhHHHHHHHHHHh-hCCCCCEEEEEcCCC
Confidence 556777889999999999987766666655555444 456899999999953
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=84.76 E-value=0.17 Score=50.34 Aligned_cols=17 Identities=41% Similarity=0.632 Sum_probs=13.7
Q ss_pred cCCeEE-EEcCCCcchhH
Q psy3476 53 KERVVI-IAGDTGCGKST 69 (1417)
Q Consensus 53 ~~~~~i-I~a~TGsGKTt 69 (1417)
.++.+| |+|++||||||
T Consensus 20 ~~~~iIgI~G~~GSGKST 37 (198)
T d1rz3a_ 20 AGRLVLGIDGLSRSGKTT 37 (198)
T ss_dssp SSSEEEEEEECTTSSHHH
T ss_pred CCCEEEEEECCCCCCHHH
Confidence 345555 99999999998
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.47 E-value=0.15 Score=52.40 Aligned_cols=27 Identities=22% Similarity=0.207 Sum_probs=22.8
Q ss_pred HhcCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
+..+++++|.|++|||||+...|++..
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHTTT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 446789999999999999988887654
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=84.42 E-value=0.28 Score=48.41 Aligned_cols=16 Identities=38% Similarity=0.644 Sum_probs=14.0
Q ss_pred EEEEcCCCcchhHHHH
Q psy3476 57 VIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 57 ~iI~a~TGsGKTt~ip 72 (1417)
++|.||+||||||+.-
T Consensus 3 I~i~G~pGSGKsT~a~ 18 (182)
T d1zina1 3 LVLMGLPGAGKGTQAE 18 (182)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6899999999999653
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=84.34 E-value=0.39 Score=49.45 Aligned_cols=25 Identities=28% Similarity=0.421 Sum_probs=18.2
Q ss_pred HHHHHHhcC--CeEEEEcCCCcchhHH
Q psy3476 46 EIIDTVLKE--RVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 46 ~il~~i~~~--~~~iI~a~TGsGKTt~ 70 (1417)
.+.+.+.++ ++++++||+|+||||.
T Consensus 35 ~l~~~i~~~~~~~lll~Gp~G~GKTtl 61 (231)
T d1iqpa2 35 RLKHYVKTGSMPHLLFAGPPGVGKTTA 61 (231)
T ss_dssp HHHHHHHHTCCCEEEEESCTTSSHHHH
T ss_pred HHHHHHHcCCCCeEEEECCCCCcHHHH
Confidence 344444444 5799999999999973
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=84.28 E-value=0.16 Score=50.02 Aligned_cols=17 Identities=41% Similarity=0.696 Sum_probs=14.6
Q ss_pred CeEEEEcCCCcchhHHH
Q psy3476 55 RVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~i 71 (1417)
++++|+|+.||||||++
T Consensus 2 kiivi~G~~GsGKTT~~ 18 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46789999999999864
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=84.09 E-value=0.29 Score=48.63 Aligned_cols=16 Identities=38% Similarity=0.667 Sum_probs=13.7
Q ss_pred EEEEcCCCcchhHHHH
Q psy3476 57 VIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 57 ~iI~a~TGsGKTt~ip 72 (1417)
++|.||+|||||||+-
T Consensus 3 I~i~G~pGSGKsT~a~ 18 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQAD 18 (182)
T ss_dssp EEEECSTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 6889999999999653
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=84.08 E-value=0.25 Score=56.84 Aligned_cols=17 Identities=29% Similarity=0.665 Sum_probs=14.8
Q ss_pred cCCeEEEEcCCCcchhH
Q psy3476 53 KERVVIIAGDTGCGKST 69 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt 69 (1417)
..+++++.||||||||.
T Consensus 48 ~ksNILliGPTGvGKTl 64 (443)
T d1g41a_ 48 TPKNILMIGPTGVGKTE 64 (443)
T ss_dssp CCCCEEEECCTTSSHHH
T ss_pred ccccEEEECCCCCCHHH
Confidence 35699999999999995
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=84.06 E-value=0.059 Score=55.10 Aligned_cols=62 Identities=19% Similarity=0.224 Sum_probs=41.2
Q ss_pred cccccchHHHHHHHhhhcccc--chhHHHHHHhhccchhhhHhhhhccc-cccchhhhccccccc
Q psy3476 1120 NFLSSYDVLVLDEIHERHLHG--DFLLGVIKCLLHSTAEVKIILMSATI-NIELFHTYFNRIAKD 1181 (1417)
Q Consensus 1120 ~~ls~~t~~iide~her~~~~--d~ll~~l~~~~~~~~~lk~ilmsat~-~~~~f~~yf~~~~~~ 1181 (1417)
.++...+++|+||+|.=.-.. ..+-.+++......++.+.++||||+ |.+-|..|++..+.+
T Consensus 134 ~~~~~~~~ii~DE~h~~~~~~r~~~~~~~l~~i~~~~~~~~~l~lSATl~n~~~~~~~l~~~~~~ 198 (202)
T d2p6ra3 134 SWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATAPNVTEIAEWLDADYYV 198 (202)
T ss_dssp SGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCCTTHHHHHHHTTCEEEE
T ss_pred hhhhhhhhccccHHHHhcccccchHHHHHHHHHHhcCCCCcEEEEcCCCCcHHHHHHHcCCCeee
Confidence 456778899999999422111 11222334444556788999999998 778889998665543
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=83.95 E-value=0.29 Score=48.40 Aligned_cols=15 Identities=40% Similarity=0.598 Sum_probs=13.4
Q ss_pred EEEEcCCCcchhHHH
Q psy3476 57 VIIAGDTGCGKSTQI 71 (1417)
Q Consensus 57 ~iI~a~TGsGKTt~i 71 (1417)
++|.||+|||||||.
T Consensus 3 I~i~G~pGSGKsT~~ 17 (179)
T d1e4va1 3 IILLGAPVAGKGTQA 17 (179)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999975
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=83.46 E-value=0.2 Score=50.20 Aligned_cols=16 Identities=44% Similarity=0.638 Sum_probs=13.8
Q ss_pred eEEEEcCCCcchhHHH
Q psy3476 56 VVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~i 71 (1417)
.++|.||+||||||+.
T Consensus 5 ~I~i~GppGsGKsT~a 20 (189)
T d1zaka1 5 KVMISGAPASGKGTQC 20 (189)
T ss_dssp CEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999854
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=83.34 E-value=0.32 Score=47.63 Aligned_cols=15 Identities=40% Similarity=0.658 Sum_probs=13.2
Q ss_pred CeEEEEcCCCcchhH
Q psy3476 55 RVVIIAGDTGCGKST 69 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt 69 (1417)
++++|.|+.||||||
T Consensus 1 k~I~liG~~GsGKsT 15 (161)
T d1viaa_ 1 KNIVFIGFMGSGKST 15 (161)
T ss_dssp CCEEEECCTTSCHHH
T ss_pred CcEEEECCCCCCHHH
Confidence 457888999999997
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=83.30 E-value=0.62 Score=48.64 Aligned_cols=17 Identities=24% Similarity=0.573 Sum_probs=14.4
Q ss_pred CeEEEEcCCCcchhHHH
Q psy3476 55 RVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~i 71 (1417)
+.+++.||+|||||+.+
T Consensus 33 ~~ilL~GpPGtGKT~la 49 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLR 49 (273)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 36899999999999743
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.21 E-value=0.46 Score=48.70 Aligned_cols=20 Identities=30% Similarity=0.498 Sum_probs=17.0
Q ss_pred cCCeEEEEcCCCcchhHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIP 72 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ip 72 (1417)
.+..++|.|+-|||||||+-
T Consensus 2 rG~lI~ieG~dGsGKsT~~~ 21 (209)
T d1nn5a_ 2 RGALIVLEGVDRAGKSTQSR 21 (209)
T ss_dssp CCCEEEEEESTTSSHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHH
Confidence 56788999999999999753
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=83.12 E-value=0.37 Score=49.81 Aligned_cols=15 Identities=47% Similarity=0.756 Sum_probs=13.7
Q ss_pred CeEEEEcCCCcchhH
Q psy3476 55 RVVIIAGDTGCGKST 69 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt 69 (1417)
+.+++.||+|||||+
T Consensus 36 ~~~L~~GPpGtGKT~ 50 (238)
T d1in4a2 36 DHVLLAGPPGLGKTT 50 (238)
T ss_dssp CCEEEESSTTSSHHH
T ss_pred CeEEEECCCCCcHHH
Confidence 479999999999997
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.02 E-value=0.41 Score=49.22 Aligned_cols=17 Identities=29% Similarity=0.573 Sum_probs=14.5
Q ss_pred CeEEEEcCCCcchhHHH
Q psy3476 55 RVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~i 71 (1417)
.++++.||+||||||.+
T Consensus 34 ~~lll~Gp~G~GKTtl~ 50 (237)
T d1sxjd2 34 PHMLFYGPPGTGKTSTI 50 (237)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCChHHHH
Confidence 46899999999999844
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=82.81 E-value=0.48 Score=51.64 Aligned_cols=17 Identities=29% Similarity=0.665 Sum_probs=14.7
Q ss_pred cCCeEEEEcCCCcchhH
Q psy3476 53 KERVVIIAGDTGCGKST 69 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt 69 (1417)
..+.+++.||||||||+
T Consensus 48 ~~~~iLl~GPpG~GKT~ 64 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTE 64 (309)
T ss_dssp CCCCEEEECCTTSSHHH
T ss_pred CCceEEEECCCCCCHHH
Confidence 45788999999999995
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=82.65 E-value=0.36 Score=47.83 Aligned_cols=18 Identities=39% Similarity=0.615 Sum_probs=14.6
Q ss_pred eEEEEcCCCcchhHHHHH
Q psy3476 56 VVIIAGDTGCGKSTQIPQ 73 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ipq 73 (1417)
.++|.||.|||||||.-.
T Consensus 2 ~I~i~G~pGsGKsT~a~~ 19 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVK 19 (181)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 468899999999996543
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=82.59 E-value=0.35 Score=48.34 Aligned_cols=16 Identities=38% Similarity=0.636 Sum_probs=13.4
Q ss_pred eEEEEcCCCcchhHHH
Q psy3476 56 VVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~i 71 (1417)
.+||.||+|||||||.
T Consensus 5 riil~G~pGSGKsT~a 20 (190)
T d1ak2a1 5 RAVLLGPPGAGKGTQA 20 (190)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567899999999864
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=82.45 E-value=0.56 Score=48.50 Aligned_cols=16 Identities=31% Similarity=0.559 Sum_probs=14.2
Q ss_pred CeEEEEcCCCcchhHH
Q psy3476 55 RVVIIAGDTGCGKSTQ 70 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ 70 (1417)
+.+++.||+|+||||.
T Consensus 36 ~~~Ll~GPpG~GKTtl 51 (239)
T d1ixsb2 36 EHLLLFGPPGLGKTTL 51 (239)
T ss_dssp CCEEEECCTTSCHHHH
T ss_pred CeEEEECCCCCCHHHH
Confidence 5789999999999973
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=81.97 E-value=0.28 Score=50.73 Aligned_cols=25 Identities=24% Similarity=0.647 Sum_probs=20.7
Q ss_pred cCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
.+.+++|.|++|||||+...|++.+
T Consensus 25 ~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 25 KDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 5679999999999999877666554
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.91 E-value=0.35 Score=47.91 Aligned_cols=15 Identities=40% Similarity=0.618 Sum_probs=13.2
Q ss_pred CeEEEEcCCCcchhH
Q psy3476 55 RVVIIAGDTGCGKST 69 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt 69 (1417)
.+++++|++||||||
T Consensus 20 ~vI~L~G~pGSGKTT 34 (195)
T d1x6va3 20 CTVWLTGLSGAGKTT 34 (195)
T ss_dssp EEEEEESSCHHHHHH
T ss_pred eEEEEECCCCCCHHH
Confidence 467789999999997
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=81.90 E-value=0.25 Score=50.67 Aligned_cols=27 Identities=30% Similarity=0.336 Sum_probs=22.4
Q ss_pred HhcCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 51 VLKERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 51 i~~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
+..+++++|.|++|+|||+...|++..
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~~ 57 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCVN 57 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 445789999999999999877777665
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.89 E-value=0.27 Score=50.91 Aligned_cols=26 Identities=15% Similarity=0.083 Sum_probs=22.3
Q ss_pred hcCCeEEEEcCCCcchhHHHHHHHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQIPQYLVQ 77 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ipq~ile 77 (1417)
..+.+++|.|++|||||+...|++.+
T Consensus 35 p~G~~~~i~G~~GsGKT~lalq~~~~ 60 (258)
T d1v5wa_ 35 ESMAITEAFGEFRTGKTQLSHTLCVT 60 (258)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 35679999999999999988888765
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.42 E-value=0.65 Score=47.52 Aligned_cols=39 Identities=10% Similarity=0.285 Sum_probs=24.7
Q ss_pred CCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEc
Q psy3476 318 SSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMS 358 (1417)
Q Consensus 318 ~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmS 358 (1417)
.+..++|+||+| .+..+....+++.+........+++.+
T Consensus 98 ~~~kiiiiDe~d--~~~~~~~~~Ll~~le~~~~~~~~~~~~ 136 (227)
T d1sxjc2 98 KGFKLIILDEAD--AMTNAAQNALRRVIERYTKNTRFCVLA 136 (227)
T ss_dssp CSCEEEEETTGG--GSCHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCeEEEEEeccc--cchhhHHHHHHHHhhhcccceeecccc
Confidence 456799999999 344455566666666555555555543
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=80.98 E-value=0.65 Score=47.51 Aligned_cols=23 Identities=30% Similarity=0.541 Sum_probs=18.2
Q ss_pred cCCeEEEEcCCCcchhHHHHHHH
Q psy3476 53 KERVVIIAGDTGCGKSTQIPQYL 75 (1417)
Q Consensus 53 ~~~~~iI~a~TGsGKTt~ipq~i 75 (1417)
+++.++|+||+|+||||.+-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~ 23 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALL 23 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 47789999999999998654333
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=80.91 E-value=0.39 Score=48.62 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=18.9
Q ss_pred CeEEEEcCCCcchhHHHHHHHHHcCC
Q psy3476 55 RVVIIAGDTGCGKSTQIPQYLVQAGF 80 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~ipq~ile~~~ 80 (1417)
.++.|.||.|||||||.-...-+.++
T Consensus 4 piI~I~GppGSGKgT~ak~La~~~gl 29 (225)
T d1ckea_ 4 PVITIDGPSGAGKGTLCKAMAEALQW 29 (225)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 47888899999999976544444443
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=80.88 E-value=0.39 Score=46.32 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=14.8
Q ss_pred CeEEEEcCCCcchhHHH
Q psy3476 55 RVVIIAGDTGCGKSTQI 71 (1417)
Q Consensus 55 ~~~iI~a~TGsGKTt~i 71 (1417)
+++.|+|+.||||||.+
T Consensus 3 Pvi~itG~~GSGKTTL~ 19 (170)
T d1np6a_ 3 PLLAFAAWSGTGKTTLL 19 (170)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 47899999999999854
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.77 E-value=0.38 Score=47.75 Aligned_cols=18 Identities=39% Similarity=0.754 Sum_probs=14.3
Q ss_pred eEEEEcCCCcchhHHHHH
Q psy3476 56 VVIIAGDTGCGKSTQIPQ 73 (1417)
Q Consensus 56 ~~iI~a~TGsGKTt~ipq 73 (1417)
.++|.||.|||||||.-.
T Consensus 4 rIvl~G~pGSGKtT~a~~ 21 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPN 21 (180)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 357789999999997543
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=80.76 E-value=0.33 Score=49.41 Aligned_cols=25 Identities=28% Similarity=0.446 Sum_probs=20.8
Q ss_pred hcCCeEEEEcCCCcchhHHHHHHHH
Q psy3476 52 LKERVVIIAGDTGCGKSTQIPQYLV 76 (1417)
Q Consensus 52 ~~~~~~iI~a~TGsGKTt~ipq~il 76 (1417)
..+.+++|.|++|+|||+...|++.
T Consensus 24 ~~G~~~~I~G~~G~GKT~la~~~~~ 48 (242)
T d1tf7a1 24 PIGRSTLVSGTSGTGKTLFSIQFLY 48 (242)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 4678999999999999987666654
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=80.48 E-value=0.27 Score=51.98 Aligned_cols=44 Identities=11% Similarity=0.219 Sum_probs=28.7
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccCCCCcEEEEcc
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHSTAEVKIILMSA 359 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r~~~qvIlmSA 359 (1417)
..+.+-+++|+||+= -.++......+...+....++.-+|+.|-
T Consensus 153 al~~~p~ililDEpt-s~LD~~~~~~i~~~l~~l~~~~Tvi~itH 196 (241)
T d2pmka1 153 ALVNNPKILIFDEAT-SALDYESEHVIMRNMHKICKGRTVIIIAH 196 (241)
T ss_dssp HHTTCCSEEEECCCC-SCCCHHHHHHHHHHHHHHHTTSEEEEECS
T ss_pred hhhcccchhhhhCCc-cccCHHHHHHHHHHHHHHhCCCEEEEEEC
Confidence 456788999999997 56776666666666655444544444443
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.37 E-value=0.27 Score=52.20 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=23.7
Q ss_pred cCCCCccEEEEecCcccccCcchHHHHHHHHhccC
Q psy3476 315 NFLSSYDVLVLDEIHERHLHGDFLLGVIKCLLHST 349 (1417)
Q Consensus 315 ~~L~~~~~VIlDEaHER~l~~d~ll~llk~l~~~r 349 (1417)
..+.+-+++|+||.= -.+|......+...+....
T Consensus 165 al~~~p~ililDEpT-s~LD~~~~~~i~~~l~~l~ 198 (251)
T d1jj7a_ 165 ALIRKPCVLILDDAT-SALDANSQLQVEQLLYESP 198 (251)
T ss_dssp HHTTCCSEEEEESTT-TTCCHHHHHHHHHHHHTCG
T ss_pred ccccCCcEEEecCcC-cccChhhHHHHHHHHHHHh
Confidence 456778999999997 5666666666666665543
|