Psyllid ID: psy348

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290---
Protein Sequence
MKKLDSLPVIIPRHINQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFTQLVPSLMGMFGEKTKKSKKEKKKTK
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHEEEccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEcccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHccHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHcccccc
Coil and Loop (DISEMBL)
mkkldslpviiprhiNQHQIELVVMFFITNVCnnyafdfniamPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSsqeikkygvsdeeqlsyseNLFWWSLGITLLTVALFISARMGIYQEVLYkthgkypyealyythllplpaFAFLYKNLYEHWLIavnstplplpsylsfisiPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFTQLvpslmgmfgektkkskkekkktk
Flexible Loop (DISEMBL)
MKKLDSLPVIIPRHINQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFTQLvpslmgmfgektkkskkekkktk
Low Complexity Region (SEG)
MKKLDSLPVIIPRHINQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVimitlgiiictimSSQEIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFTQLVPSLMGMFGektkkskkekkktk
Disordered region (IsUnstruct)
******LPVIIPRHINQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFTQLVPSLMGM****************
Disordered Region (DISOPRED)
***********PRHINQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIM*****************YSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFTQ************************
Disordered Region (DISEMBL)
MKKLDSLPVIIPRHINQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFTQLVPSLMGMFGE*************
Disordered Region (DISPRO)
***LDSLPVIIPRHINQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSS*****************ENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFTQLVPSL*******************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKKLDSLPVIIPRHINQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFTQLVPSLMGMFGEKTKKSKKEKKKTK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	293	2.2.26 [Sep-21-2011]
Q9W429	352	UDP-xylose and UDP-N-acet	yes	N/A	0.948	0.789	0.543	2e-81
Q7ZW46	331	UDP-xylose and UDP-N-acet	yes	N/A	0.894	0.791	0.539	2e-76
Q8CIA5	331	UDP-xylose and UDP-N-acet	yes	N/A	0.894	0.791	0.526	2e-75
Q969S0	331	UDP-xylose and UDP-N-acet	yes	N/A	0.880	0.779	0.533	3e-74
Q5R8M3	331	UDP-xylose and UDP-N-acet	yes	N/A	0.880	0.779	0.529	7e-74
Q95KB4	331	UDP-xylose and UDP-N-acet	N/A	N/A	0.880	0.779	0.529	9e-74
Q869W7	351	UDP-N-acetylglucosamine t	yes	N/A	0.924	0.772	0.394	1e-43
O74750	316	UDP-N-acetylglucosamine t	yes	N/A	0.819	0.759	0.330	9e-30
Q00974	328	UDP-N-acetylglucosamine t	no	N/A	0.849	0.759	0.300	3e-27
P40004	342	UDP-N-acetylglucosamine t	yes	N/A	0.918	0.786	0.286	2e-26

>sp|Q9W429|S35B4_DROME UDP-xylose and UDP-N-acetylglucosamine transporter-like OS=Drosophila melanogaster GN=CG3774 PE=2 SV=1

 Score =  302 bits (773), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 156/287 (54%), Positives = 209/287 (72%), Gaps = 9/287 (3%)

Query: 12  PRHINQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTL 71
           P+   +  + LV +FF  NVCNNYAF+FNI MPLHMIFR+GSL+ NMIMGI++LKK Y L
Sbjct: 63  PKIALKDYVILVALFFGANVCNNYAFNFNIPMPLHMIFRSGSLMANMIMGIVLLKKRYNL 122

Query: 72  DKYVSVIMITLGIIICTIMSSQEIKKYGV-SDEEQLSYSENLFWWSLGITLLTVALFISA 130
            +Y SV MIT GII+CT++SS ++K     S +   SYS+  FWW++GI LLT+AL ++A
Sbjct: 123 RQYSSVAMITAGIILCTLVSSGDVKDNTHHSLKVDTSYSD-FFWWTVGIGLLTIALLVTA 181

Query: 131 RMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSF 190
            MGIYQEV+YK +GK+P EAL++TH+LPLP F  +  N+ +H+ IA +S P+ +P  L  
Sbjct: 182 YMGIYQEVIYKKYGKHPSEALFFTHMLPLPGFLIMAGNIVQHFGIAWSSEPVAVP-LLGA 240

Query: 191 ISI----PSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQ 246
           I +    P ++FYLL NV+TQY+CIS+VY LTTEC SLTVTLV+TLRKFVSLLFSI+YF+
Sbjct: 241 IGLEWKFPLMLFYLLCNVVTQYVCISAVYVLTTECASLTVTLVVTLRKFVSLLFSIIYFR 300

Query: 247 NEFTLYHWTGTALVFVGTVIFTQLVPSLMGMFGEKTKKSKKEKKKTK 293
           N FTL HW GT LVF GT++F  ++  +   +  + + S+K    T 
Sbjct: 301 NPFTLNHWVGTILVFFGTILFANVINQVRDAY--RARSSRKTHFDTA 345

Sugar transporter that specifically mediates the transport of UDP-N-acetylglucosamine (UDP-GlcNAc).
Drosophila melanogaster (taxid: 7227)

>sp|Q7ZW46|S35B4_DANRE UDP-xylose and UDP-N-acetylglucosamine transporter OS=Danio rerio GN=slc35b4 PE=2 SV=1

 Score =  286 bits (731), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 144/267 (53%), Positives = 195/267 (73%), Gaps = 5/267 (1%)

Query: 22  LVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMIT 81
           +V MFF  +V NNYA DFNIAMPLHMIFR+GSLI NMI+GIIILK  Y++ KY+S+++++
Sbjct: 69  MVTMFFTVSVINNYALDFNIAMPLHMIFRSGSLIANMILGIIILKNRYSMSKYLSIVLVS 128

Query: 82  LGIIICTIMSSQEIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYK 141
           +GI ICTIMS++++       EE   Y+     W LGI +LT AL +SARMGI+QE LYK
Sbjct: 129 VGIFICTIMSAKQVNVEKGGTEEDGVYA--FMHWLLGIAMLTFALLMSARMGIFQETLYK 186

Query: 142 THGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFYLL 201
            +GK+  EAL+Y H LPLP F  L  N+Y H ++   S P+ +P  +  +S+P + FYLL
Sbjct: 187 KYGKHSKEALFYNHCLPLPGFLLLSTNIYNHAVLFSQSPPMEVP--VIGLSMPVMWFYLL 244

Query: 202 GNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVF 261
            NV+TQY+CI  V+ LTTEC SLTVTLV+TLRKF+SL+ SI+YFQN FT +HW GTA+VF
Sbjct: 245 MNVITQYVCIRGVFILTTECASLTVTLVVTLRKFLSLIISILYFQNPFTAWHWVGTAVVF 304

Query: 262 VGTVIFTQLVPSLMGMF-GEKTKKSKK 287
           +GT+++T+++ S+   F G K  K  +
Sbjct: 305 LGTLLYTEVLSSIPAAFKGYKVDKKAE 331

Sugar transporter that specifically mediates the transport of UDP-xylose (UDP-Xyl) and UDP-N-acetylglucosamine (UDP-GlcNAc) from cytosol into Golgi.

Danio rerio (taxid: 7955)

>sp|Q8CIA5|S35B4_MOUSE UDP-xylose and UDP-N-acetylglucosamine transporter OS=Mus musculus GN=Slc35b4 PE=2 SV=2

 Score =  282 bits (722), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 141/268 (52%), Positives = 195/268 (72%), Gaps = 6/268 (2%)

Query: 22  LVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMIT 81
           +V MFF  +V NNYA + NIAMPLHMIFR+GSLI NMI+GIIILKK Y++ KY S+ +++
Sbjct: 69  MVTMFFTVSVVNNYALNLNIAMPLHMIFRSGSLIANMILGIIILKKRYSMFKYTSIALVS 128

Query: 82  LGIIICTIMSSQEIK-KYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLY 140
            GI ICT MS++++  + G+SD++     +   WW LGI  LT AL +SARMGI+QE LY
Sbjct: 129 AGIFICTFMSAKQVTVQTGLSDKDGF---QAFAWWLLGIAALTFALLMSARMGIFQETLY 185

Query: 141 KTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFYL 200
           +  GK+  EAL+Y H LPLP F FL  ++Y+H ++   S    +P  +  +++P + FYL
Sbjct: 186 RQFGKHSKEALFYNHALPLPGFIFLASDIYDHVVLFNKSELYQVP--VIGVTMPVMWFYL 243

Query: 201 LGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALV 260
           L NV+TQY+CI  V+ LTTEC SLTVTLV+TLRKFVSL+FSI+YFQN+FT++HW GT+ V
Sbjct: 244 LMNVVTQYVCIRGVFILTTECTSLTVTLVVTLRKFVSLIFSILYFQNQFTMWHWLGTSFV 303

Query: 261 FVGTVIFTQLVPSLMGMFGEKTKKSKKE 288
           F+GT+++T++  +L     E  K  KK+
Sbjct: 304 FIGTLMYTEVWKNLGTTKSELQKDDKKD 331

Sugar transporter that specifically mediates the transport of UDP-xylose (UDP-Xyl) and UDP-N-acetylglucosamine (UDP-GlcNAc) from cytosol into Golgi.

Mus musculus (taxid: 10090)

>sp|Q969S0|S35B4_HUMAN UDP-xylose and UDP-N-acetylglucosamine transporter OS=Homo sapiens GN=SLC35B4 PE=2 SV=1

 Score =  278 bits (711), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 145/272 (53%), Positives = 191/272 (70%), Gaps = 14/272 (5%)

Query: 22  LVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMIT 81
           +V MFF  +V NNYA + NIAMPLHMIFR+GSLI NMI+GIIILKK Y++ KY S+ +++
Sbjct: 69  MVTMFFTVSVVNNYALNLNIAMPLHMIFRSGSLIANMILGIIILKKRYSIFKYTSIALVS 128

Query: 82  LGIIICTIMSSQEIKKYGVSDEEQLSYSEN-----LFWWSLGITLLTVALFISARMGIYQ 136
           +GI ICT MS++++         Q S SEN       WW LGI  LT AL +SARMGI+Q
Sbjct: 129 VGIFICTFMSAKQVT-------SQSSLSENDGFQAFVWWLLGIGALTFALLMSARMGIFQ 181

Query: 137 EVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSI 196
           E LYK  GK+  EAL+Y H LPLP F FL  ++Y+H ++   S    +P  +  +++P +
Sbjct: 182 ETLYKRFGKHSKEALFYNHALPLPGFVFLASDIYDHAVLFNKSELYEIP--VIGVTLPIM 239

Query: 197 VFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTG 256
            FYLL N++TQY+CI  V+ LTTEC SLTVTLV+TLRKFVSL+FSI+YFQN FTL+HW G
Sbjct: 240 WFYLLMNIITQYVCIRGVFILTTECASLTVTLVVTLRKFVSLIFSILYFQNPFTLWHWLG 299

Query: 257 TALVFVGTVIFTQLVPSLMGMFGEKTKKSKKE 288
           T  VF+GT+++T++  +L     E  K SKK 
Sbjct: 300 TLFVFIGTLMYTEVWNNLGTTKSEPQKDSKKN 331

Sugar transporter that specifically mediates the transport of UDP-xylose (UDP-Xyl) and UDP-N-acetylglucosamine (UDP-GlcNAc) from cytosol into Golgi.

Homo sapiens (taxid: 9606)

>sp|Q5R8M3|S35B4_PONAB UDP-xylose and UDP-N-acetylglucosamine transporter OS=Pongo abelii GN=SLC35B4 PE=2 SV=1

 Score =  277 bits (708), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 144/272 (52%), Positives = 191/272 (70%), Gaps = 14/272 (5%)

Query: 22  LVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMIT 81
           +V MFF  +V NNYA + NIAMPLHMIFR+GSLI NMI+GIIILKK Y++ KY S+ +++
Sbjct: 69  MVTMFFTVSVVNNYALNLNIAMPLHMIFRSGSLIANMILGIIILKKRYSIFKYTSIALVS 128

Query: 82  LGIIICTIMSSQEIKKYGVSDEEQLSYSEN-----LFWWSLGITLLTVALFISARMGIYQ 136
           +GI ICT MS++++         Q S SEN       WW LGI  LT AL +SARMG++Q
Sbjct: 129 VGIFICTFMSAKQVT-------SQSSLSENDGFQAFVWWLLGIGALTFALLMSARMGLFQ 181

Query: 137 EVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSI 196
           E LYK  GK+  EAL+Y H LPLP F FL  ++Y+H ++   S    +P  +  +++P +
Sbjct: 182 ETLYKRFGKHSKEALFYNHALPLPGFVFLASDIYDHAVLFNKSELYEIP--VIGVTLPIM 239

Query: 197 VFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTG 256
            FYLL N++TQY+CI  V+ LTTEC SLTVTLV+TLRKFVSL+FSI+YFQN FTL+HW G
Sbjct: 240 WFYLLMNIITQYVCIRGVFILTTECASLTVTLVVTLRKFVSLIFSILYFQNPFTLWHWLG 299

Query: 257 TALVFVGTVIFTQLVPSLMGMFGEKTKKSKKE 288
           T  VF+GT+++T++  +L     E  K SKK 
Sbjct: 300 TLFVFIGTLMYTEVWNNLGTTKSEPQKDSKKN 331

Sugar transporter that specifically mediates the transport of UDP-xylose (UDP-Xyl) and UDP-N-acetylglucosamine (UDP-GlcNAc) from cytosol into Golgi.

Pongo abelii (taxid: 9601)

>sp|Q95KB4|S35B4_MACFA UDP-xylose and UDP-N-acetylglucosamine transporter OS=Macaca fascicularis GN=SLC35B4 PE=2 SV=1

 Score =  276 bits (707), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 144/272 (52%), Positives = 190/272 (69%), Gaps = 14/272 (5%)

Query: 22  LVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMIT 81
           +V MFF  +V NNYA + NIAMPLHMIFR+GSLI NMI+GIIILKK Y++ KY S+ +++
Sbjct: 69  MVTMFFTVSVVNNYALNLNIAMPLHMIFRSGSLIANMILGIIILKKRYSIFKYTSIALVS 128

Query: 82  LGIIICTIMSSQEIKKYGVSDEEQLSYSEN-----LFWWSLGITLLTVALFISARMGIYQ 136
           +GI ICT MS++++         Q S SEN       WW LGI  LT AL +SARMGI+Q
Sbjct: 129 VGIFICTFMSAKQVT-------SQSSLSENDGFQAFVWWLLGIGALTFALLMSARMGIFQ 181

Query: 137 EVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSI 196
           E LYK  GK+  EAL+Y H LPLP F FL  ++Y+H ++   S    +P     +++P +
Sbjct: 182 ETLYKQFGKHSKEALFYNHALPLPGFIFLASDIYDHAVLFNKSELYEIPGI--GVTLPIM 239

Query: 197 VFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTG 256
            FYLL N++TQY+CI  V+ LTTEC SLTVTLV+TLRKFVSL+FSI+YFQN FTL+HW G
Sbjct: 240 WFYLLMNIITQYVCIRGVFILTTECASLTVTLVVTLRKFVSLIFSILYFQNPFTLWHWLG 299

Query: 257 TALVFVGTVIFTQLVPSLMGMFGEKTKKSKKE 288
           T  VF+GT+++T++  +L     E  K +KK 
Sbjct: 300 TLFVFIGTLMYTEVWNNLGTTKSEPQKDNKKN 331

Sugar transporter that specifically mediates the transport of UDP-xylose (UDP-Xyl) and UDP-N-acetylglucosamine (UDP-GlcNAc) from cytosol into Golgi.

Macaca fascicularis (taxid: 9541)

>sp|Q869W7|S35B4_DICDI UDP-N-acetylglucosamine transporter slc35b4 OS=Dictyostelium discoideum GN=slc35b4 PE=3 SV=2

 Score =  177 bits (448), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 116/294 (39%), Positives = 178/294 (60%), Gaps = 23/294 (7%)

Query: 11  IPRHINQHQIEL------VVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIII 64
           IP  + + +I L      V +FFI +V NN A D +I +P HMIFR+ SL++ +++G I 
Sbjct: 68  IPIGLRERKIPLKTYFLMVSIFFILSVLNNKALDCDIPIPFHMIFRSSSLLSTIVIGSIF 127

Query: 65  LKKVYTLDKYVSVIMITLGIIICTIMSSQEIKKYGVSDEEQLSYSENLFWWSLGITLLTV 124
            +K Y+  + +S+IM+TLGII  T  S  + KK     E  L +  NL  +S+G+ +L  
Sbjct: 128 YRKSYSKQQILSLIMVTLGIIFATFSSMPDSKK-----EISLGHEPNLLRFSIGMLMLIA 182

Query: 125 ALFISARMGIYQEVLYKTHGK-YPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLP 183
           A+F+S+ +G+ QE  YK +GK   YE ++Y+HL  LP F     ++  H  +  +S  + 
Sbjct: 183 AMFLSSILGLIQEHTYKLYGKDRHYETIFYSHLFSLPFFLLFKDDILHHIQLNNDSALMA 242

Query: 184 LPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIV 243
           LP    F S P++  YL+ NVLTQY+CI  V+ LT + ++LT TLVI++RKF+S++ S++
Sbjct: 243 LP--FGFGSFPTLWVYLIVNVLTQYVCIQGVFILTGKTSTLTCTLVISIRKFLSIIISVI 300

Query: 244 YFQNEFTLYHWTGTALVFVGTVIFTQLVPSLMGMFGEK----TKKSKKEKKKTK 293
           YF N FT   +TGT LVF+GT ++     S  G   EK    TK+ K+ +K+ K
Sbjct: 301 YFNNHFTSLLFTGTILVFLGTFMY-----STSGKVIEKPLPPTKQVKEIEKEKK 349

Sugar transporter that specifically mediates the transport of UDP-N-acetylglucosamine (UDP-GlcNAc) from cytosol into Golgi.

Dictyostelium discoideum (taxid: 44689)

>sp|O74750|YEA4_SCHPO UDP-N-acetylglucosamine transporter yea4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=yea4 PE=3 SV=1

 Score =  130 bits (328), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 86/260 (33%), Positives = 145/260 (55%), Gaps = 20/260 (7%)

Query: 12  PRHINQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTL 71
           P+   +    +VVMFF  NV NN A  F+I++P+H+I R+   +T M +G I+  K Y+ 
Sbjct: 61  PKVPRKRWFVVVVMFFAINVLNNVALGFDISVPVHIILRSSGPLTTMAVGRILAGKRYSS 120

Query: 72  DKYVSVIMITLGIIICTIMSSQEIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISAR 131
            +  SV ++T+G+II T+ +++++            + E++  + +G T+L +   + A 
Sbjct: 121 LQIGSVFILTIGVIIATLGNAKDLHL----------HVESMTRFGIGFTILVITQILGAI 170

Query: 132 MGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHW--LIAVNSTPLPLPSYLS 189
           MG+  E  Y+ +G    E+L+YTH L LP F FL + +   W  L A+++          
Sbjct: 171 MGLVLENTYRIYGSDWRESLFYTHALSLPFFLFLLRPIRSQWNDLFAIHTK--------G 222

Query: 190 FISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEF 249
           F+++PS V+YL  N L QY C+  V  L  E ++LTV++V+ +RKFVSL  S++ F+NE 
Sbjct: 223 FLNLPSGVWYLCFNTLAQYFCVRGVNALGAETSALTVSVVLNVRKFVSLCLSLILFENEM 282

Query: 250 TLYHWTGTALVFVGTVIFTQ 269
                 G  LVF  + ++  
Sbjct: 283 GPAVKFGALLVFGSSAVYAS 302

Sugar transporter that specifically mediates the transport of UDP-N-acetylglucosamine (UDP-GlcNAc) and is required for cell wall chitin synthesis.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q00974|YEA4_KLULA UDP-N-acetylglucosamine transporter YEA4 OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=YEA4 PE=3 SV=1

 Score =  122 bits (306), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 79/263 (30%), Positives = 145/263 (55%), Gaps = 14/263 (5%)

Query: 12  PRHI--NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVY 69
           PRHI    H +  V +FF ++V NN  F F+I++P+H+I R       MI+G  +  K Y
Sbjct: 64  PRHIPLKIHMLA-VFLFFTSSVANNSVFKFDISVPIHIIIRCSGTTLTMIIGWAVCNKRY 122

Query: 70  TLDKYVSVIMITLGIIICTIMSSQEIKKYGVS-DEEQLSYSENLFWWSLGITLLTVALFI 128
           +  +  S I++TLG I+ ++   +E     +  + + +  ++   +   GI ++ VA  +
Sbjct: 123 SKLQVQSAIIMTLGAIVASLYRDKEFSMDSLKLNTDSVGMTQKSMF---GIFVVLVATAL 179

Query: 129 SARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHW---LIAVNSTPLPLP 185
            + + +  E  Y   GK+  E L+Y+H L LP F   Y  L + +   LI+ +S  +P+ 
Sbjct: 180 MSLLSLLNEWTYNKCGKHWKETLFYSHFLALPLFMLGYTRLRDEFRDLLISSDSMDIPIV 239

Query: 186 SYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYF 245
                + I + +F L+ N +TQ++CI  V  L +  ++LT+++V+ +RKFVSLL S+  +
Sbjct: 240 K----LPIATKLFMLIANNVTQFICIKGVNMLASNTDALTLSVVLLVRKFVSLLLSVYIY 295

Query: 246 QNEFTLYHWTGTALVFVGTVIFT 268
           +N  ++  + GT  VF+G  +++
Sbjct: 296 KNVLSVTAYLGTITVFLGAGLYS 318

Sugar transporter that specifically mediates the transport of UDP-N-acetylglucosamine (UDP-GlcNAc) from the cytosol into Golgi vesicles where glycosyltransferases function.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|P40004|YEA4_YEAST UDP-N-acetylglucosamine transporter YEA4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YEA4 PE=1 SV=1

 Score =  119 bits (299), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 146/293 (49%), Gaps = 24/293 (8%)

Query: 8   PVIIPRHINQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKK 67
           P+  P H+    +  VV+F+I++  NN  F +NI++P+H++FR    +  M    ++  +
Sbjct: 65  PLKTPLHV---YVITVVLFYISSTTNNNVFKYNISIPIHIVFRCFGTVITMFTCWLLNGR 121

Query: 68  VYTLDKYVSVIMITLGIIICTIMSSQEIK---------KYGVSDEEQLSYSENLFWWSLG 118
            YT  + +S + +T+G II ++    + +         K G      L++         G
Sbjct: 122 KYTKIQILSTLFLTIGAIIASLFKDADFRYQDLKLQAWKIGSDQSVDLTFI-------FG 174

Query: 119 ITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVN 178
           I +L ++ F S+ +  Y E  Y+ +GK+  E ++Y+H L LP F F  K L   + +   
Sbjct: 175 ICILVLSSFTSSLLSAYNERTYQKYGKHWKENIFYSHFLSLPLFLFSRKQLIHEYRVMRK 234

Query: 179 STPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSL 238
           S  +   ++   I +P     LL NVLTQY C+  V  L ++ N+LT+++ + +RKF+SL
Sbjct: 235 SERILCSNFGGKILVPREETLLLFNVLTQYFCVKGVNILASKTNALTLSITLLVRKFISL 294

Query: 239 LFSIVYFQNEFTLYHWTGTALVFVGTVIFTQLVPSLMGMFGEKTKKSKKEKKK 291
           L S+  F N  +   + G  LVF G  I+     SL  +   +  K   +K K
Sbjct: 295 LLSVRLFDNNLSYTGYIGVYLVFFGAFIY-----SLGSIHPRQNDKGAIKKSK 342

Sugar transporter that specifically mediates the transport of UDP-N-acetylglucosamine (UDP-GlcNAc) and is required for cell wall chitin synthesis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
193579962	337	PREDICTED: UDP-xylose and UDP-N-acetylgl	0.836	0.727	0.7	1e-93
239790162	337	ACYPI010094 [Acyrthosiphon pisum]	0.836	0.727	0.7	2e-93
307191353	335	UDP-xylose and UDP-N-acetylglucosamine t	0.904	0.791	0.624	1e-90
340727265	335	PREDICTED: UDP-xylose and UDP-N-acetylgl	0.897	0.785	0.642	5e-88
307215090	333	UDP-xylose and UDP-N-acetylglucosamine t	0.856	0.753	0.682	1e-87
350423129	335	PREDICTED: UDP-xylose and UDP-N-acetylgl	0.897	0.785	0.634	5e-87
195133438	346	GI16379 [Drosophila mojavensis] gi|19390	0.952	0.806	0.568	6e-86
195048777	344	GH24120 [Drosophila grimshawi] gi|193893	0.924	0.787	0.581	7e-86
380025748	335	PREDICTED: UDP-xylose and UDP-N-acetylgl	0.890	0.779	0.644	8e-86
195396469	351	GJ16752 [Drosophila virilis] gi|19414662	0.959	0.800	0.554	5e-85

>gi|193579962|ref|XP_001951928.1| PREDICTED: UDP-xylose and UDP-N-acetylglucosamine transporter-like isoform 1 [Acyrthosiphon pisum] gi|328697529|ref|XP_003240363.1| PREDICTED: UDP-xylose and UDP-N-acetylglucosamine transporter-like isoform 2 [Acyrthosiphon pisum]

 Score =  348 bits (894), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 175/250 (70%), Positives = 200/250 (80%), Gaps = 5/250 (2%)

Query: 22  LVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMIT 81
           LV MFF+TNV NNYAFD NIAMPLHMIFRAGSLI NM+MG+IILKK YTLDK++SV MI+
Sbjct: 69  LVAMFFVTNVLNNYAFDLNIAMPLHMIFRAGSLIANMVMGVIILKKKYTLDKFISVGMIS 128

Query: 82  LGIIICTIMSSQEIKKYGVSDEEQ-LSYSENLFWWSLGITLLTVALFISARMGIYQEVLY 140
            GI ICTI+SSQ++KK  V    Q  S  E+ FWW LGI  LT+ALFISARMGIYQE LY
Sbjct: 129 AGITICTIVSSQDVKKTVVHGVVQNTSELEDFFWWCLGIACLTIALFISARMGIYQETLY 188

Query: 141 KTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFYL 200
           K HGK+P EAL+YTHL+PLP F FLY NL EH L+A  S PLP   +     IPS + YL
Sbjct: 189 KKHGKHPQEALFYTHLIPLPWFLFLYSNLKEHALMAFESEPLPFIGF----GIPSTLVYL 244

Query: 201 LGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALV 260
            GNV TQY+CISSVY+LTTEC+SLTVTLVITLRKF SLLFSI+YF N FTLYHW GT LV
Sbjct: 245 TGNVFTQYVCISSVYFLTTECSSLTVTLVITLRKFASLLFSILYFSNPFTLYHWIGTLLV 304

Query: 261 FVGTVIFTQL 270
           F+GT+IFT++
Sbjct: 305 FIGTIIFTEI 314

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239790162|dbj|BAH71658.1| ACYPI010094 [Acyrthosiphon pisum]

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 175/250 (70%), Positives = 200/250 (80%), Gaps = 5/250 (2%)

Query: 22  LVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMIT 81
           LV MFF+TNV NNYAFD NIAMPLHMIFRAGSLI NM+MG+IILKK YTLDK++SV MI+
Sbjct: 69  LVAMFFVTNVLNNYAFDLNIAMPLHMIFRAGSLIANMVMGVIILKKKYTLDKFISVGMIS 128

Query: 82  LGIIICTIMSSQEIKKYGVSDEEQ-LSYSENLFWWSLGITLLTVALFISARMGIYQEVLY 140
            GI ICTI+SSQ++KK  V    Q  S  E+ FWW LGI  LT+ALFISARMGIYQE LY
Sbjct: 129 AGITICTIVSSQDVKKTVVHGVVQNTSELEDFFWWCLGIACLTIALFISARMGIYQETLY 188

Query: 141 KTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFYL 200
           K HGK+P EAL+YTHL+PLP F FLY NL EH L+A  S PLP   +     IPS + YL
Sbjct: 189 KKHGKHPQEALFYTHLIPLPWFLFLYSNLKEHALMAFESEPLPFIGF----GIPSTLVYL 244

Query: 201 LGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALV 260
            GNV TQY+CISSVY+LTTEC+SLTVTLVITLRKF SLLFSI+YF N FTLYHW GT LV
Sbjct: 245 TGNVFTQYVCISSVYFLTTECSSLTVTLVITLRKFASLLFSILYFSNPFTLYHWIGTLLV 304

Query: 261 FVGTVIFTQL 270
           F+GT+IFT++
Sbjct: 305 FIGTIIFTEI 314

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307191353|gb|EFN74954.1| UDP-xylose and UDP-N-acetylglucosamine transporter-like [Camponotus floridanus]

 Score =  339 bits (869), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 168/269 (62%), Positives = 207/269 (76%), Gaps = 4/269 (1%)

Query: 22  LVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMIT 81
           LV+MFF+ NVCNNYAFDFNI MPLHMIFRAGSLI NMIMGIIIL + Y   KY+SV MIT
Sbjct: 69  LVIMFFVANVCNNYAFDFNIPMPLHMIFRAGSLIANMIMGIIILNRKYAFSKYLSVFMIT 128

Query: 82  LGIIICTIMSSQEIKKYGVSDEEQLSYS--ENLFWWSLGITLLTVALFISARMGIYQEVL 139
            GI +CTI+S QEIK     + + +  +  ++ FWW LGI+LLT+ALFISARMGIYQE L
Sbjct: 129 TGIALCTIVSGQEIKSLQQKNADYVPTTPWDDFFWWILGISLLTIALFISARMGIYQEEL 188

Query: 140 YKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFY 199
           +  +GK+  EALYYTH LPLP F  L  N+Y+HW  A+ S PL LP  L  + +PS++ Y
Sbjct: 189 HSRYGKHAREALYYTHFLPLPFFLTLAPNIYDHWKFALASEPLKLP--LIGVHMPSLIAY 246

Query: 200 LLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTAL 259
           L+GNVLTQY+CISSV+ LTTEC+SLTVTLVITLRKF+SLLFSI+YF+N FT++HW GT L
Sbjct: 247 LIGNVLTQYICISSVFTLTTECSSLTVTLVITLRKFLSLLFSIIYFKNPFTIHHWIGTLL 306

Query: 260 VFVGTVIFTQLVPSLMGMFGEKTKKSKKE 288
           VF+GT+IFT+++P +M       K  K E
Sbjct: 307 VFIGTIIFTEVIPKIMQSLQNVPKTKKVE 335

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727265|ref|XP_003401968.1| PREDICTED: UDP-xylose and UDP-N-acetylglucosamine transporter-like [Bombus terrestris]

 Score =  330 bits (846), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 174/271 (64%), Positives = 214/271 (78%), Gaps = 8/271 (2%)

Query: 22  LVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMIT 81
           LV MFFI NVCNNYAFDFNI MPLHMIFRAGSLI NMIMGIIILKK Y   KY+SV MIT
Sbjct: 69  LVTMFFIANVCNNYAFDFNIPMPLHMIFRAGSLIANMIMGIIILKKRYVFSKYLSVFMIT 128

Query: 82  LGIIICTIMSSQEIKKYGVSDEEQLSYS--ENLFWWSLGITLLTVALFISARMGIYQEVL 139
           LGI ICTI+S +EIK     + EQ+  +  ++LFWW LGI+LLT+ALF+SARMGIYQEVL
Sbjct: 129 LGIAICTIVSGKEIKSLRAKNVEQVPTTPWDDLFWWILGISLLTIALFVSARMGIYQEVL 188

Query: 140 YKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFY 199
           +K +GK P EALYYTHLLPLP F  L  N+++H++ A+ S P+ + +    + +P ++ Y
Sbjct: 189 HKKYGKNPREALYYTHLLPLPFFLTLAPNIWDHFMYALASDPIKISTI--NLQMPKLILY 246

Query: 200 LLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTAL 259
           L+GNVLTQY+CISSV+ LT EC SLTVTLVITLRKF+SL+FSI+YF+N FTLYHW GT L
Sbjct: 247 LIGNVLTQYVCISSVFTLTAECTSLTVTLVITLRKFLSLIFSIIYFKNPFTLYHWIGTIL 306

Query: 260 VFVGTVIFTQLVPSLMGMFGEKTKKSKKEKK 290
           VF+GTVIFT+L+P +M    E  + ++K KK
Sbjct: 307 VFLGTVIFTELLPKIM----ESLRSTEKIKK 333

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307215090|gb|EFN89897.1| UDP-xylose and UDP-N-acetylglucosamine transporter-like [Harpegnathos saltator]

 Score =  328 bits (842), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 174/255 (68%), Positives = 204/255 (80%), Gaps = 4/255 (1%)

Query: 22  LVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMIT 81
           LV MFF+TNVCNNYAFDFNI MPLHMIFRAGSLI NMIMGIIILKK YT  KY+SV MIT
Sbjct: 69  LVTMFFVTNVCNNYAFDFNIPMPLHMIFRAGSLIANMIMGIIILKKKYTFSKYLSVFMIT 128

Query: 82  LGIIICTIMSSQEIKKYGVSDEEQLSYS--ENLFWWSLGITLLTVALFISARMGIYQEVL 139
            GI ICTI+S +EIK     D E +  +  E+ FWW LGI+LLT+ALF+SARMGIYQEVL
Sbjct: 129 SGIAICTIVSGKEIKSLRQKDMEHVPTTPLEDFFWWILGISLLTIALFVSARMGIYQEVL 188

Query: 140 YKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFY 199
           +  +GK   EALYYTHLLPLP F  L  N+Y+HW  A+ S  + LP  L  + +P +V Y
Sbjct: 189 HSRYGKNAREALYYTHLLPLPFFLTLAPNIYDHWKFALASELIELP--LIGVYMPKLVVY 246

Query: 200 LLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTAL 259
           L+GN+LTQY+CISSV+ LTTECNSLTVTLVITLRKF+SLLFSI+YF+N FTL+HW GT L
Sbjct: 247 LVGNILTQYMCISSVFVLTTECNSLTVTLVITLRKFLSLLFSIIYFKNPFTLHHWVGTIL 306

Query: 260 VFVGTVIFTQLVPSL 274
           VFVGTVIFT++VP +
Sbjct: 307 VFVGTVIFTEVVPKI 321

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350423129|ref|XP_003493394.1| PREDICTED: UDP-xylose and UDP-N-acetylglucosamine transporter-like [Bombus impatiens]

 Score =  327 bits (837), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 172/271 (63%), Positives = 213/271 (78%), Gaps = 8/271 (2%)

Query: 22  LVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMIT 81
           LV MFF+ NVCNNYAFDFNI MPLHMIFRAGSLI NMIMGIIILKK Y   KY+SV MIT
Sbjct: 69  LVTMFFVANVCNNYAFDFNIPMPLHMIFRAGSLIANMIMGIIILKKRYVFSKYLSVFMIT 128

Query: 82  LGIIICTIMSSQEIKKYGVSDEEQLSYS--ENLFWWSLGITLLTVALFISARMGIYQEVL 139
           LGI ICTI+S +EIK     + EQ+  +  ++LFWW LGI+LLT+ALF+SARMGIYQEVL
Sbjct: 129 LGIAICTIVSGKEIKSLQAKNVEQVPTTPWDDLFWWILGISLLTIALFVSARMGIYQEVL 188

Query: 140 YKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFY 199
           +K +GK P EALYYTHLLPLP F  L  N+++H++ A+ S P+ +   +  + +P ++ Y
Sbjct: 189 HKKYGKNPREALYYTHLLPLPFFLTLAPNIWDHFMYALASDPIKIS--IINLQMPKLILY 246

Query: 200 LLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTAL 259
           L+GNVLTQY+CISSV+ LT EC SLTVTLVITLRKF+SL+FSI+YF+N FTLYHW GT L
Sbjct: 247 LMGNVLTQYVCISSVFTLTAECTSLTVTLVITLRKFLSLIFSIIYFKNPFTLYHWIGTIL 306

Query: 260 VFVGTVIFTQLVPSLMGMFGEKTKKSKKEKK 290
           VF+GTVIFT+L+P +     E  + ++K KK
Sbjct: 307 VFLGTVIFTELLPKIT----ESLRSTEKIKK 333

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195133438|ref|XP_002011146.1| GI16379 [Drosophila mojavensis] gi|193907121|gb|EDW05988.1| GI16379 [Drosophila mojavensis]

 Score =  323 bits (828), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 162/285 (56%), Positives = 211/285 (74%), Gaps = 6/285 (2%)

Query: 12  PRHINQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTL 71
           P+   +  + LVV+FF  NVCNNYAF+FNI MPLHMIFR+GSL+ NMIMGII+LKK Y L
Sbjct: 63  PKIAFKDYVMLVVLFFGANVCNNYAFNFNIPMPLHMIFRSGSLMANMIMGIILLKKRYNL 122

Query: 72  DKYVSVIMITLGIIICTIMSSQEIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISAR 131
            +Y SV MIT+GII+CT++SS ++K       +  +   + FWWS+GI LLT+AL ++A 
Sbjct: 123 RQYSSVAMITVGIILCTLVSSGDVKDNTHPTLKVDTSFSDFFWWSVGIALLTIALLVTAY 182

Query: 132 MGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNS----TPLPLPSY 187
           MGIYQEV+YK +GK+P EAL+YTH+LPLP F  +  N+ +HW IAV+S      LP+P  
Sbjct: 183 MGIYQEVIYKRYGKHPNEALFYTHMLPLPGFLIMASNIAQHWSIAVSSEAVAVALPVPGV 242

Query: 188 LSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQN 247
              +S P ++FYLL NV+TQY+CISSVY LTTEC SLTVTLV+TLRKFVSLLFSI+YF+N
Sbjct: 243 SWTLSFPLMLFYLLCNVVTQYICISSVYVLTTECASLTVTLVVTLRKFVSLLFSIIYFRN 302

Query: 248 EFTLYHWTGTALVFVGTVIFTQLVPSLMGMFGEKTKKSKKEKKKT 292
            FTL HW GT LVF GTV+F  ++  L   +  + +++K+ K KT
Sbjct: 303 PFTLSHWLGTILVFFGTVLFANVINQLKDAY--QARQAKQAKLKT 345

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195048777|ref|XP_001992594.1| GH24120 [Drosophila grimshawi] gi|193893435|gb|EDV92301.1| GH24120 [Drosophila grimshawi]

 Score =  323 bits (827), Expect = 7e-86,   Method: Compositional matrix adjust.
 Identities = 160/275 (58%), Positives = 205/275 (74%), Gaps = 4/275 (1%)

Query: 22  LVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMIT 81
           LVV+FF  NVCNNYAF+FNI MPLHMIFR+GSL+ NMIMGII+L+K Y L +Y SV MIT
Sbjct: 69  LVVLFFGANVCNNYAFNFNIPMPLHMIFRSGSLMANMIMGIILLRKRYNLRQYSSVAMIT 128

Query: 82  LGIIICTIMSSQEIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYK 141
            GII+CT++SS ++K       +  +   + FWWS+GI LLT+AL ++A MGIYQEV+YK
Sbjct: 129 AGIILCTLVSSGDVKDNTHHSLKVDTTYSDFFWWSVGIALLTIALLVTAYMGIYQEVIYK 188

Query: 142 THGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPL--PSYLSFISIPSIVFY 199
            HGK+P EAL+YTH+LPLP F  +  N+ +HW IAV S P+ L  P     +S P I+FY
Sbjct: 189 RHGKHPSEALFYTHMLPLPGFLIMASNIAQHWSIAVASEPVALTVPGLSWTVSFPLILFY 248

Query: 200 LLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTAL 259
           LL NV+TQY+CIS+VY LTTEC SLTVTLV+TLRKF+SLLFSIVYF+N FT+ HW GT L
Sbjct: 249 LLCNVVTQYICISAVYVLTTECASLTVTLVVTLRKFISLLFSIVYFRNPFTVSHWLGTIL 308

Query: 260 VFVGTVIFTQLVPSLMGMFGEKTKKS--KKEKKKT 292
           VF GT++F  ++  +   F  + ++   +KEK KT
Sbjct: 309 VFFGTILFANVINQVKDAFEARKQQQLVRKEKLKT 343

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380025748|ref|XP_003696630.1| PREDICTED: UDP-xylose and UDP-N-acetylglucosamine transporter-like [Apis florea]

 Score =  323 bits (827), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 172/267 (64%), Positives = 208/267 (77%), Gaps = 6/267 (2%)

Query: 22  LVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMIT 81
           LV MFF+ NVCNNYAFDFNI MPLHMIFRAGSLI NMIMGIIILKK Y   KY+SV MIT
Sbjct: 69  LVTMFFVANVCNNYAFDFNIPMPLHMIFRAGSLIANMIMGIIILKKKYIFSKYLSVFMIT 128

Query: 82  LGIIICTIMSSQEIKKYGVSDEEQLSYS--ENLFWWSLGITLLTVALFISARMGIYQEVL 139
           LGI ICTI+S +EIK     + EQ+  +  ++ FWW LGI+LLT+ALF+SARMGIYQEVL
Sbjct: 129 LGIAICTIVSGKEIKSLQPKNIEQVPTTPWDDFFWWILGISLLTIALFVSARMGIYQEVL 188

Query: 140 YKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFY 199
           +K +GK   EALYYTHLLPLP F  L  N+++H L A+ S P+ +   +  I +P ++ Y
Sbjct: 189 HKKYGKNAREALYYTHLLPLPFFLTLTSNIWDHLLYALASDPIKIS--IINIQVPKLIIY 246

Query: 200 LLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTAL 259
           L+GN+LTQY+CISSV+ LTTEC SLTVTLVITLRKF+SLLFSI+YF+N FT+YHW GT L
Sbjct: 247 LIGNILTQYMCISSVFVLTTECTSLTVTLVITLRKFLSLLFSIIYFKNPFTIYHWIGTIL 306

Query: 260 VFVGTVIFTQLVPSLMG--MFGEKTKK 284
           VF GTVIFT+++P +     F EK KK
Sbjct: 307 VFTGTVIFTEILPKIAESLQFTEKIKK 333

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195396469|ref|XP_002056854.1| GJ16752 [Drosophila virilis] gi|194146621|gb|EDW62340.1| GJ16752 [Drosophila virilis]

 Score =  320 bits (820), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 157/283 (55%), Positives = 209/283 (73%), Gaps = 2/283 (0%)

Query: 12  PRHINQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTL 71
           P+   +  ++LVV+FF  NVCNNYAF+FNI MPLHMIFR+GSL+ NMIMGII+LKK Y L
Sbjct: 63  PKIALKDYVKLVVLFFGANVCNNYAFNFNIPMPLHMIFRSGSLMANMIMGIILLKKRYNL 122

Query: 72  DKYVSVIMITLGIIICTIMSSQEIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISAR 131
            +Y SV MIT GI++CT++SS ++K       +  +   ++FWWS+GI LL+VAL ++A 
Sbjct: 123 RQYSSVAMITAGIVLCTLVSSGDVKDNTHHSLKVETSFSDVFWWSVGIALLSVALLVTAY 182

Query: 132 MGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNS--TPLPLPSYLS 189
           MGIYQEV++K HGK+P EAL++TH+LPLP F  +  N+ +HW IAV S    +P+P    
Sbjct: 183 MGIYQEVIFKRHGKHPREALFFTHMLPLPGFLIMASNIAQHWKIAVASETVAVPMPGISW 242

Query: 190 FISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEF 249
            ++ P ++FYLL NV+TQY+CISSVY LTTEC SLTVTLV+TLRKFVSLLFSIVYF+N F
Sbjct: 243 SLAFPLMLFYLLCNVVTQYICISSVYVLTTECASLTVTLVVTLRKFVSLLFSIVYFRNPF 302

Query: 250 TLYHWTGTALVFVGTVIFTQLVPSLMGMFGEKTKKSKKEKKKT 292
           TL HW GT LVF GT++F  ++  L+  +  + +K  +   KT
Sbjct: 303 TLSHWLGTVLVFFGTILFADVLNQLLETYRLRLEKRFEAAPKT 345

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	293
FB|FBgn0029849	352	Efr "ER GDP-fucose transporter	0.880	0.732	0.547	1.4e-71
FB|FBgn0039641	322	CG14511 [Drosophila melanogast	0.839	0.763	0.536	2.1e-68
ZFIN|ZDB-GENE-030131-2457	331	slc35b4 "solute carrier family	0.863	0.764	0.521	3.1e-67
MGI|MGI:1931249	331	Slc35b4 "solute carrier family	0.883	0.782	0.507	1.7e-66
RGD|1308985	331	Slc35b4 "solute carrier family	0.883	0.782	0.511	5.8e-66
UNIPROTKB|E1BUQ6	331	SLC35B4 "Uncharacterized prote	0.863	0.764	0.513	7.4e-66
UNIPROTKB|E1BEH8	331	SLC35B4 "Uncharacterized prote	0.836	0.740	0.530	7.4e-66
UNIPROTKB|Q969S0	331	SLC35B4 "UDP-xylose and UDP-N-	0.873	0.773	0.509	4.1e-65
UNIPROTKB|F1SNG8	328	SLC35B4 "Uncharacterized prote	0.849	0.759	0.513	1.1e-64
UNIPROTKB|I3LGE7	325	SLC35B4 "Uncharacterized prote	0.849	0.766	0.513	1.1e-64

FB|FBgn0029849 Efr "ER GDP-fucose transporter" [Drosophila melanogaster (taxid:7227)]

 Score = 724 (259.9 bits), Expect = 1.4e-71, P = 1.4e-71
 Identities = 145/265 (54%), Positives = 190/265 (71%)

Query:    12 PRHINQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTL 71
             P+   +  + LV +FF  NVCNNYAF+FNI MPLHMIFR+GSL+ NMIMGI++LKK Y L
Sbjct:    63 PKIALKDYVILVALFFGANVCNNYAFNFNIPMPLHMIFRSGSLMANMIMGIVLLKKRYNL 122

Query:    72 DKYVSVXXXXXXXXXXXXXSSQEIK-KYGVSDEEQLSYSENLFWWSLGITLLTVALFISA 130
              +Y SV             SS ++K     S +   SYS+  FWW++GI LLT+AL ++A
Sbjct:   123 RQYSSVAMITAGIILCTLVSSGDVKDNTHHSLKVDTSYSD-FFWWTVGIGLLTIALLVTA 181

Query:   131 RMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSF 190
              MGIYQEV+YK +GK+P EAL++TH+LPLP F  +  N+ +H+ IA +S P+ +P  L  
Sbjct:   182 YMGIYQEVIYKKYGKHPSEALFFTHMLPLPGFLIMAGNIVQHFGIAWSSEPVAVP-LLGA 240

Query:   191 ISI----PSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQ 246
             I +    P ++FYLL NV+TQY+CIS+VY LTTEC SLTVTLV+TLRKFVSLLFSI+YF+
Sbjct:   241 IGLEWKFPLMLFYLLCNVVTQYVCISAVYVLTTECASLTVTLVVTLRKFVSLLFSIIYFR 300

Query:   247 NEFTLYHWTGTALVFVGTVIFTQLV 271
             N FTL HW GT LVF GT++F  ++
Sbjct:   301 NPFTLNHWVGTILVFFGTILFANVI 325

GO:0005338 "nucleotide-sugar transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0015786 "UDP-glucose transport" evidence=IDA

GO:0005464 "UDP-xylose transmembrane transporter activity" evidence=IDA

GO:0036066 "protein O-linked fucosylation" evidence=IDA

GO:0016021 "integral to membrane" evidence=ISM

GO:0005456 "CMP-N-acetylneuraminate transmembrane transporter activity" evidence=IDA

GO:0015788 "UDP-N-acetylglucosamine transport" evidence=IDA

GO:0015784 "GDP-mannose transport" evidence=IDA

GO:0005458 "GDP-mannose transmembrane transporter activity" evidence=IDA

GO:0015783 "GDP-fucose transport" evidence=IDA

GO:0005460 "UDP-glucose transmembrane transporter activity" evidence=IDA

GO:0015012 "heparan sulfate proteoglycan biosynthetic process" evidence=IDA

GO:0015787 "UDP-glucuronic acid transport" evidence=IDA

GO:0005457 "GDP-fucose transmembrane transporter activity" evidence=IDA

GO:0015782 "CMP-N-acetylneuraminate transport" evidence=IDA

GO:0036084 "GDP-fucose import into endoplasmic reticulum lumen" evidence=IC

GO:0015790 "UDP-xylose transport" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005461 "UDP-glucuronic acid transmembrane transporter activity" evidence=IDA

GO:0005462 "UDP-N-acetylglucosamine transmembrane transporter activity" evidence=IDA

FB|FBgn0039641 CG14511 [Drosophila melanogaster (taxid:7227)]

 Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
 Identities = 134/250 (53%), Positives = 174/250 (69%)

Query:    22 LVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVXXXX 81
             LV MFF+T+VCNNY F F + M LHMI R GSLI+NM +  +ILK+ Y L +Y+SV    
Sbjct:    73 LVAMFFLTSVCNNYVFKFKVPMTLHMIIRGGSLISNMCLCTLILKRSYRLSQYISVLMIS 132

Query:    82 XXXXXXXXXSSQEIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYK 141
                      SS ++   G  +        + FWW LG+ LL +ALF+S+ MGI QE+LY+
Sbjct:   133 VGIFVCTYFSSPDL--VGKMENLDSGAEADTFWWLLGVALLVLALFVSSYMGITQELLYR 190

Query:   142 THGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFYLL 201
              HGK   EALYYTHLLPLPAF  ++ ++  HWL+A       LP  L  +++P I+ YLL
Sbjct:   191 RHGKCAREALYYTHLLPLPAFLLMHDDIRTHWLLAFTGESYQLP--LLGVAVPLILLYLL 248

Query:   202 GNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVF 261
             GNVL Q+LCISSVY LTTEC+SLTVTL++TLRKF+SL+FSIVYF+N FT +HW GTALVF
Sbjct:   249 GNVLAQHLCISSVYTLTTECSSLTVTLILTLRKFISLVFSIVYFRNPFTWWHWLGTALVF 308

Query:   262 VGTVIFTQLV 271
             VGT++F  ++
Sbjct:   309 VGTLMFANVI 318

GO:0005462 "UDP-N-acetylglucosamine transmembrane transporter activity" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005797 "Golgi medial cisterna" evidence=IDA

ZFIN|ZDB-GENE-030131-2457 slc35b4 "solute carrier family 35, member B4" [Danio rerio (taxid:7955)]

 Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
 Identities = 134/257 (52%), Positives = 179/257 (69%)

Query:    22 LVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVXXXX 81
             +V MFF  +V NNYA DFNIAMPLHMIFR+GSLI NMI+GIIILK  Y++ KY+S+    
Sbjct:    69 MVTMFFTVSVINNYALDFNIAMPLHMIFRSGSLIANMILGIIILKNRYSMSKYLSIVLVS 128

Query:    82 XXXXXXXXXSSQEIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYK 141
                      S++++       EE   Y+     W LGI +LT AL +SARMGI+QE LYK
Sbjct:   129 VGIFICTIMSAKQVNVEKGGTEEDGVYA--FMHWLLGIAMLTFALLMSARMGIFQETLYK 186

Query:   142 THGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFYLL 201
              +GK+  EAL+Y H LPLP F  L  N+Y H ++   S P+ +P  +  +S+P + FYLL
Sbjct:   187 KYGKHSKEALFYNHCLPLPGFLLLSTNIYNHAVLFSQSPPMEVP--VIGLSMPVMWFYLL 244

Query:   202 GNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVF 261
              NV+TQY+CI  V+ LTTEC SLTVTLV+TLRKF+SL+ SI+YFQN FT +HW GTA+VF
Sbjct:   245 MNVITQYVCIRGVFILTTECASLTVTLVVTLRKFLSLIISILYFQNPFTAWHWVGTAVVF 304

Query:   262 VGTVIFTQLVPSLMGMF 278
             +GT+++T+++ S+   F
Sbjct:   305 LGTLLYTEVLSSIPAAF 321

GO:0055085 "transmembrane transport" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

MGI|MGI:1931249 Slc35b4 "solute carrier family 35, member B4" [Mus musculus (taxid:10090)]

 Score = 676 (243.0 bits), Expect = 1.7e-66, P = 1.7e-66
 Identities = 136/268 (50%), Positives = 187/268 (69%)

Query:     8 PVIIPRHINQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKK 67
             P  IP  I  + I +V MFF  +V NNYA + NIAMPLHMIFR+GSLI NMI+GIIILKK
Sbjct:    58 PPAIP--IRYYAI-MVTMFFTVSVVNNYALNLNIAMPLHMIFRSGSLIANMILGIIILKK 114

Query:    68 VYTLDKYVSVXXXXXXXXXXXXXSSQEIK-KYGVSDEEQLSYSENLFWWSLGITLLTVAL 126
              Y++ KY S+             S++++  + G+SD++     +   WW LGI  LT AL
Sbjct:   115 RYSMFKYTSIALVSAGIFICTFMSAKQVTVQTGLSDKDGF---QAFAWWLLGIAALTFAL 171

Query:   127 FISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPS 186
              +SARMGI+QE LY+  GK+  EAL+Y H LPLP F FL  ++Y+H ++  N + L    
Sbjct:   172 LMSARMGIFQETLYRQFGKHSKEALFYNHALPLPGFIFLASDIYDH-VVLFNKSELYQVP 230

Query:   187 YLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQ 246
              +  +++P + FYLL NV+TQY+CI  V+ LTTEC SLTVTLV+TLRKFVSL+FSI+YFQ
Sbjct:   231 VIG-VTMPVMWFYLLMNVVTQYVCIRGVFILTTECTSLTVTLVVTLRKFVSLIFSILYFQ 289

Query:   247 NEFTLYHWTGTALVFVGTVIFTQLVPSL 274
             N+FT++HW GT+ VF+GT+++T++  +L
Sbjct:   290 NQFTMWHWLGTSFVFIGTLMYTEVWKNL 317

GO:0005462 "UDP-N-acetylglucosamine transmembrane transporter activity" evidence=ISO

GO:0005464 "UDP-xylose transmembrane transporter activity" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0006111 "regulation of gluconeogenesis" evidence=IMP

GO:0006810 "transport" evidence=IEA

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0015788 "UDP-N-acetylglucosamine transport" evidence=ISO

GO:0015790 "UDP-xylose transport" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

RGD|1308985 Slc35b4 "solute carrier family 35, member B4" [Rattus norvegicus (taxid:10116)]

 Score = 671 (241.3 bits), Expect = 5.8e-66, P = 5.8e-66
 Identities = 137/268 (51%), Positives = 185/268 (69%)

Query:     8 PVIIPRHINQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKK 67
             P  IP  I  + I +V MFF  +V NNYA + NIAMPLHMIFR+GSLI NMI+GIIILKK
Sbjct:    58 PPAIP--IRYYAI-MVTMFFTVSVVNNYALNLNIAMPLHMIFRSGSLIANMILGIIILKK 114

Query:    68 VYTLDKYVSVXXXXXXXXXXXXXSSQEIK-KYGVSDEEQLSYSENLFWWSLGITLLTVAL 126
              Y++ KY S+             S++++  +  +SD++     +   WW LGI  LT AL
Sbjct:   115 RYSMFKYTSIALVSAGIFICTFMSAKQVTVQSSLSDKDGF---QAFAWWLLGIGALTFAL 171

Query:   127 FISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPS 186
              +SARMGI+QE LY+  GK+  EAL+Y H LPLP F FL  ++Y+H ++  N + L    
Sbjct:   172 LMSARMGIFQETLYRQFGKHSKEALFYNHALPLPGFIFLASDIYDH-VVLFNKSELYQVP 230

Query:   187 YLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQ 246
              L  +++P + FYLL NV+TQY+CI  V+ LTTEC+SLTVTLV+TLRKFVSL+FSI+YFQ
Sbjct:   231 VLG-VTVPIMWFYLLMNVVTQYVCIRGVFILTTECSSLTVTLVVTLRKFVSLIFSILYFQ 289

Query:   247 NEFTLYHWTGTALVFVGTVIFTQLVPSL 274
             N+FTL+HW GT  VF GT+++T++  +L
Sbjct:   290 NQFTLWHWLGTVFVFTGTLMYTEVWKNL 317

GO:0005462 "UDP-N-acetylglucosamine transmembrane transporter activity" evidence=IEA;ISO

GO:0005464 "UDP-xylose transmembrane transporter activity" evidence=IEA;ISO

GO:0005794 "Golgi apparatus" evidence=IEA;ISO

GO:0006111 "regulation of gluconeogenesis" evidence=ISO

GO:0015788 "UDP-N-acetylglucosamine transport" evidence=ISO

GO:0015790 "UDP-xylose transport" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1BUQ6 SLC35B4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
 Identities = 133/259 (51%), Positives = 178/259 (68%)

Query:    17 QHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVS 76
             ++ + +V MFF  +V NNYA + NIAMPLHMIFR+GSLI +M +GIIILKK Y+L KY S
Sbjct:    64 RYYLIMVAMFFTVSVVNNYALNLNIAMPLHMIFRSGSLIASMALGIIILKKRYSLSKYTS 123

Query:    77 VXXXXXXXXXXXXXSSQEIKKY-GVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIY 135
             +             S++++     +++E+ L       WW LGI  LT AL +SARMGI+
Sbjct:   124 IALVSMGIFTCTFMSAKQVASDPSLNEEDGLHV---FLWWLLGIAALTFALLMSARMGIF 180

Query:   136 QEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPS 195
             QE LYK  GK+  EAL+Y H LPLP F  L  N+Y H ++   S P  +P  +  +++P 
Sbjct:   181 QETLYKQFGKHSKEALFYNHALPLPGFVLLAPNIYHHAVLFSQSEPFQIP--VIGLTMPI 238

Query:   196 IVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWT 255
             + FYLL NV+TQY+CI  V+ LTTEC SLTVTLV+TLRKFVSL+FSI+YF+N FT +HW 
Sbjct:   239 MWFYLLMNVITQYVCIRGVFILTTECTSLTVTLVVTLRKFVSLIFSILYFRNPFTAWHWL 298

Query:   256 GTALVFVGTVIFTQLVPSL 274
             GTA VFVGT+++T++  SL
Sbjct:   299 GTAFVFVGTLMYTEVWNSL 317

GO:0016021 "integral to membrane" evidence=IEA

GO:0005462 "UDP-N-acetylglucosamine transmembrane transporter activity" evidence=IEA

GO:0005464 "UDP-xylose transmembrane transporter activity" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

UNIPROTKB|E1BEH8 SLC35B4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 670 (240.9 bits), Expect = 7.4e-66, P = 7.4e-66
 Identities = 132/249 (53%), Positives = 174/249 (69%)

Query:    22 LVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVXXXX 81
             +V MFF  +V NNYA + NIAMPLHMIFR+GSLI NMI+GIIILKK Y++ KY S+    
Sbjct:    69 MVTMFFTVSVVNNYALNLNIAMPLHMIFRSGSLIANMILGIIILKKRYSIFKYTSIALVS 128

Query:    82 XXXXXXXXXSSQEIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYK 141
                      S++++     S E    + +   WW LGI  LT AL +SARMGI+QE LYK
Sbjct:   129 VGIFVCTFMSAKQVTSQSSSTEND-GF-QAFAWWLLGIGALTFALLMSARMGIFQETLYK 186

Query:   142 THGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFYLL 201
               GK+  EAL+Y H LPLP F FL  ++Y+H ++  NS    +P  +  +++P + FYLL
Sbjct:   187 QFGKHSKEALFYNHALPLPGFIFLASDIYDHAVLFNNSELYQVP--VVGVTVPIMWFYLL 244

Query:   202 GNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVF 261
              NV+TQY+CI  V+ LTTEC SLTVTLV+TLRKFVSL+FSI+YFQN FTL+HW GT  VF
Sbjct:   245 MNVITQYVCIRGVFILTTECASLTVTLVVTLRKFVSLIFSILYFQNPFTLWHWLGTLFVF 304

Query:   262 VGTVIFTQL 270
             +GT+++T++
Sbjct:   305 IGTLMYTEV 313

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005464 "UDP-xylose transmembrane transporter activity" evidence=IEA

GO:0005462 "UDP-N-acetylglucosamine transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q969S0 SLC35B4 "UDP-xylose and UDP-N-acetylglucosamine transporter" [Homo sapiens (taxid:9606)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 134/263 (50%), Positives = 178/263 (67%)

Query:     8 PVIIPRHINQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKK 67
             P  IP  I  + I +V MFF  +V NNYA + NIAMPLHMIFR+GSLI NMI+GIIILKK
Sbjct:    58 PPAIP--IRYYAI-MVTMFFTVSVVNNYALNLNIAMPLHMIFRSGSLIANMILGIIILKK 114

Query:    68 VYTLDKYVSVXXXXXXXXXXXXXSSQEIKKYGVSDEEQLSYSENLFWWSLGITLLTVALF 127
              Y++ KY S+             S++++       E    + +   WW LGI  LT AL 
Sbjct:   115 RYSIFKYTSIALVSVGIFICTFMSAKQVTSQSSLSEND-GF-QAFVWWLLGIGALTFALL 172

Query:   128 ISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSY 187
             +SARMGI+QE LYK  GK+  EAL+Y H LPLP F FL  ++Y+H ++   S    +P  
Sbjct:   173 MSARMGIFQETLYKRFGKHSKEALFYNHALPLPGFVFLASDIYDHAVLFNKSELYEIP-- 230

Query:   188 LSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQN 247
             +  +++P + FYLL N++TQY+CI  V+ LTTEC SLTVTLV+TLRKFVSL+FSI+YFQN
Sbjct:   231 VIGVTLPIMWFYLLMNIITQYVCIRGVFILTTECASLTVTLVVTLRKFVSLIFSILYFQN 290

Query:   248 EFTLYHWTGTALVFVGTVIFTQL 270
              FTL+HW GT  VF+GT+++T++
Sbjct:   291 PFTLWHWLGTLFVFIGTLMYTEV 313

GO:0008643 "carbohydrate transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015790 "UDP-xylose transport" evidence=IDA

GO:0005464 "UDP-xylose transmembrane transporter activity" evidence=IDA

GO:0005462 "UDP-N-acetylglucosamine transmembrane transporter activity" evidence=IDA

GO:0015788 "UDP-N-acetylglucosamine transport" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0000139 "Golgi membrane" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|F1SNG8 SLC35B4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 130/253 (51%), Positives = 175/253 (69%)

Query:    22 LVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVXXXX 81
             +V MFF  +V NNYA + NIAMPLHMIFR+GSLI NMI+GIIILKK Y++ KY S+    
Sbjct:    66 MVAMFFTVSVVNNYALNLNIAMPLHMIFRSGSLIANMILGIIILKKRYSIFKYTSIALVS 125

Query:    82 XXXXXXXXXSSQEIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYK 141
                      S++++     S E    + +   WW LGI  LT AL +SARMGI+QE LY+
Sbjct:   126 VGIFICTFMSAKQVTSQSSSSEND-GF-QAFAWWLLGIGALTFALLMSARMGIFQETLYR 183

Query:   142 THGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFYLL 201
               GK+  EAL+Y H LPLP F FL  ++Y+H ++   S    +P  +  +++P + FYLL
Sbjct:   184 QFGKHSKEALFYNHALPLPGFIFLASDIYDHAVLFNKSELYQVP--VVGVTVPIMWFYLL 241

Query:   202 GNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVF 261
              NV+TQY+CI  V+ LTTEC SLTVTLV+TLRKFVSL+FSI+YF+N FTL+HW GT  VF
Sbjct:   242 MNVITQYVCIRGVFTLTTECTSLTVTLVVTLRKFVSLIFSILYFRNPFTLWHWLGTVFVF 301

Query:   262 VGTVIFTQLVPSL 274
             +GT+++T++  +L
Sbjct:   302 LGTLMYTEVWSNL 314

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005464 "UDP-xylose transmembrane transporter activity" evidence=IEA

GO:0005462 "UDP-N-acetylglucosamine transmembrane transporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|I3LGE7 SLC35B4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 130/253 (51%), Positives = 175/253 (69%)

Query:    22 LVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVXXXX 81
             +V MFF  +V NNYA + NIAMPLHMIFR+GSLI NMI+GIIILKK Y++ KY S+    
Sbjct:    63 MVAMFFTVSVVNNYALNLNIAMPLHMIFRSGSLIANMILGIIILKKRYSIFKYTSIALVS 122

Query:    82 XXXXXXXXXSSQEIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYK 141
                      S++++     S E    + +   WW LGI  LT AL +SARMGI+QE LY+
Sbjct:   123 VGIFICTFMSAKQVTSQSSSSEND-GF-QAFAWWLLGIGALTFALLMSARMGIFQETLYR 180

Query:   142 THGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFYLL 201
               GK+  EAL+Y H LPLP F FL  ++Y+H ++   S    +P  +  +++P + FYLL
Sbjct:   181 QFGKHSKEALFYNHALPLPGFIFLASDIYDHAVLFNKSELYQVP--VVGVTVPIMWFYLL 238

Query:   202 GNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVF 261
              NV+TQY+CI  V+ LTTEC SLTVTLV+TLRKFVSL+FSI+YF+N FTL+HW GT  VF
Sbjct:   239 MNVITQYVCIRGVFTLTTECTSLTVTLVVTLRKFVSLIFSILYFRNPFTLWHWLGTVFVF 298

Query:   262 VGTVIFTQLVPSL 274
             +GT+++T++  +L
Sbjct:   299 LGTLMYTEVWSNL 311

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9W429	S35B4_DROME	No assigned EC number	0.5435	0.9488	0.7897	yes	N/A
Q8CIA5	S35B4_MOUSE	No assigned EC number	0.5261	0.8941	0.7915	yes	N/A
Q869W7	S35B4_DICDI	No assigned EC number	0.3945	0.9249	0.7720	yes	N/A
Q5R8M3	S35B4_PONAB	No assigned EC number	0.5294	0.8805	0.7794	yes	N/A
Q969S0	S35B4_HUMAN	No assigned EC number	0.5330	0.8805	0.7794	yes	N/A
O74750	YEA4_SCHPO	No assigned EC number	0.3307	0.8191	0.7594	yes	N/A
Q7ZW46	S35B4_DANRE	No assigned EC number	0.5393	0.8941	0.7915	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	293
pfam08449	303	pfam08449, UAA, UAA transporter family	1e-75
TIGR00803	222	TIGR00803, nst, UDP-galactose transporter	5e-09
pfam03151	149	pfam03151, TPT, Triose-phosphate Transporter famil	6e-04

>gnl|CDD|219846 pfam08449, UAA, UAA transporter family

 Score =  232 bits (595), Expect = 1e-75
 Identities = 99/247 (40%), Positives = 144/247 (58%), Gaps = 20/247 (8%)

Query: 22  LVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMIT 81
           +V  FF+++V NN A  + I+ P H+IF++  LI  MI+GI+I  K Y+  +Y+S ++IT
Sbjct: 70  IVATFFLSSVLNNEALKY-ISYPTHVIFKSCKLIPVMILGILIYGKRYSSLQYLSALLIT 128

Query: 82  LGIIICTIMSSQEIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYK 141
           LG+II T+ S+++ K          +     F  ++GI LL  AL + A  G  QE LYK
Sbjct: 129 LGVIIFTLASAKDSK----------NSKLTTFSDNVGIALLFGALLMDALTGNTQEKLYK 178

Query: 142 THGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFYLL 201
            +GK+  E ++Y+HLL LP F     ++    L           +    +  PS++FYLL
Sbjct: 179 KYGKHSKEMMFYSHLLSLPFFLLGLLDIRTGLL---------FSAESFCLRHPSVLFYLL 229

Query: 202 GNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVF 261
            N LTQY+    V+YL +E  +LTVTLV TLRKFVSLL S++ F N  TL  W GT LVF
Sbjct: 230 LNSLTQYVGQFFVFYLISEFGALTVTLVTTLRKFVSLLLSVLLFGNPLTLQQWLGTLLVF 289

Query: 262 VGTVIFT 268
           +G  ++ 
Sbjct: 290 LGIFLYA 296

This family includes transporters with a specificity for UDP-N-acetylglucosamine. Length = 303

>gnl|CDD|129885 TIGR00803, nst, UDP-galactose transporter

 Score = 55.1 bits (133), Expect = 5e-09
 Identities = 46/232 (19%), Positives = 95/232 (40%), Gaps = 14/232 (6%)

Query: 40  NIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEIK--- 96
            +++P+H+IF+  +L+   +  ++   K  T  K +S  ++TLG ++ ++   Q      
Sbjct: 1   KLSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKL 60

Query: 97  -KYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTH 155
            K GV+  + +  S        G  ++ ++  +SA +      +Y        + ++++ 
Sbjct: 61  LKLGVAIVQMVQSSAKTL--MFGNPVVGLSAVLSALLSSGFAGVYFEKILKDGDTMFWSR 118

Query: 156 LLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVY 215
            L LP F          W      +         FI  P+ V+ +    +   LCI  V 
Sbjct: 119 NLQLPLFGLFSTFSVLLWSDGTLISNFGF-----FIGYPTAVWIVGLLNVGGGLCIGGVV 173

Query: 216 YLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIF 267
                 ++ T + V  L   +S L S+  F  + +   + G  LVF+ T ++
Sbjct: 174 RYA---DNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY 222

The 10-12 TMS Nucleotide Sugar Transporters (TC 2.A.7.10)Nucleotide-sugar transporters (NSTs) are found in the Golgi apparatus and the endoplasmic reticulum of eukaryotic cells. Members of the family have been sequenced from yeast, protozoans and animals. Animals such as C. elegans possess many of these transporters. Humans have at least two closely related isoforms of the UDP-galactose:UMP exchange transporter.NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids. Length = 222

>gnl|CDD|217390 pfam03151, TPT, Triose-phosphate Transporter family

 Score = 39.1 bits (92), Expect = 6e-04
 Identities = 17/81 (20%), Positives = 39/81 (48%)

Query: 189 SFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNE 248
             +     V  LL + +  +L   S + L    + LT ++  T+++ V ++ S++ F + 
Sbjct: 69  GDLKTSRYVLLLLLSGVLAFLYNLSAFGLLGRTSPLTSSVAGTVKRVVVIVLSVIIFGDP 128

Query: 249 FTLYHWTGTALVFVGTVIFTQ 269
            T  +  G A+  +G V+++ 
Sbjct: 129 VTFLNILGLAIAILGVVLYSY 149

This family includes transporters with a specificity for triose phosphate. Length = 149

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	293
KOG1583|consensus	330		100.0
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	100.0
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	99.95
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	99.95
KOG1580|consensus	337		99.95
KOG1581|consensus	327		99.95
KOG1441|consensus	316		99.94
KOG1582|consensus	367		99.93
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	99.92
PLN00411	358	nodulin MtN21 family protein; Provisional	99.9
KOG1442|consensus	347		99.87
KOG1444|consensus	314		99.86
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	99.86
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	99.84
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	99.83
PRK11689	295	aromatic amino acid exporter; Provisional	99.83
KOG1443|consensus	349		99.81
PRK15430	296	putative chloramphenical resistance permease RarD;	99.81
KOG2234|consensus	345		99.79
PRK11272	292	putative DMT superfamily transporter inner membran	99.79
PRK10532	293	threonine and homoserine efflux system; Provisiona	99.77
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	99.76
KOG3912|consensus	372		99.73
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	99.68
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	99.66
KOG2765|consensus	416		99.65
COG0697	292	RhaT Permeases of the drug/metabolite transporter	99.65
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	99.59
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	99.5
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	99.47
KOG2766|consensus	336		99.39
COG2962	293	RarD Predicted permeases [General function predict	99.39
KOG4510|consensus	346		99.35
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	99.27
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	98.81
PF13536	113	EmrE: Multidrug resistance efflux transporter	98.72
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.62
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	98.54
PRK15430	296	putative chloramphenical resistance permease RarD;	98.49
KOG4314|consensus	290		98.47
COG2510	140	Predicted membrane protein [Function unknown]	98.46
TIGR00688	256	rarD rarD protein. This uncharacterized protein is	98.38
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.36
PF00892	126	EamA: EamA-like transporter family; InterPro: IPR0	98.32
TIGR03340	281	phn_DUF6 phosphonate utilization associated putati	98.2
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	98.14
PLN00411	358	nodulin MtN21 family protein; Provisional	98.05
PRK15051	111	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.77
PF13536	113	EmrE: Multidrug resistance efflux transporter	97.71
COG2510	140	Predicted membrane protein [Function unknown]	97.68
TIGR00950	260	2A78 Carboxylate/Amino Acid/Amine Transporter.	97.67
KOG2922|consensus	335		97.65
TIGR00817	302	tpt Tpt phosphate/phosphoenolpyruvate translocator	97.58
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.52
PRK11689	295	aromatic amino acid exporter; Provisional	97.51
PRK11453	299	O-acetylserine/cysteine export protein; Provisiona	97.49
PRK11272	292	putative DMT superfamily transporter inner membran	97.47
COG2962	293	RarD Predicted permeases [General function predict	97.45
PRK02971	129	4-amino-4-deoxy-L-arabinose-phosphoundecaprenol fl	97.44
PRK11431	105	multidrug efflux system protein; Provisional	97.42
PF03151	153	TPT: Triose-phosphate Transporter family; InterPro	97.42
COG2076	106	EmrE Membrane transporters of cations and cationic	97.38
PRK10650	109	multidrug efflux system protein MdtI; Provisional	97.36
PTZ00343	350	triose or hexose phosphate/phosphate translocator;	97.35
PRK09541	110	emrE multidrug efflux protein; Reviewed	97.23
TIGR00776	290	RhaT RhaT L-rhamnose-proton symporter family prote	97.2
PRK10452	120	multidrug efflux system protein MdtJ; Provisional	97.01
PRK13499	345	rhamnose-proton symporter; Provisional	97.0
PRK13499	345	rhamnose-proton symporter; Provisional	97.0
PRK10532	293	threonine and homoserine efflux system; Provisiona	96.99
COG0697	292	RhaT Permeases of the drug/metabolite transporter	96.97
PF04142	244	Nuc_sug_transp: Nucleotide-sugar transporter; Inte	96.86
PRK09541	110	emrE multidrug efflux protein; Reviewed	96.83
PF08449	303	UAA: UAA transporter family; InterPro: IPR013657 T	96.74
COG2076	106	EmrE Membrane transporters of cations and cationic	96.74
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	96.68
PRK10650	109	multidrug efflux system protein MdtI; Provisional	96.66
PF05653	300	Mg_trans_NIPA: Magnesium transporter NIPA; InterPr	96.53
PRK11431	105	multidrug efflux system protein; Provisional	96.53
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	96.49
PF04657	138	DUF606: Protein of unknown function, DUF606; Inter	96.22
PF06027	334	DUF914: Eukaryotic protein of unknown function (DU	96.21
KOG4510|consensus	346		95.71
PF00893	93	Multi_Drug_Res: Small Multidrug Resistance protein	95.44
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	94.96
PF06800	269	Sugar_transport: Sugar transport protein; InterPro	94.92
TIGR00803	222	nst UDP-galactose transporter. NSTs generally appe	94.65
COG5006	292	rhtA Threonine/homoserine efflux transporter [Amin	94.3
PF10639	113	UPF0546: Uncharacterised protein family UPF0546; I	93.88
KOG2765|consensus	416		93.66
KOG2234|consensus	345		91.6
PF07857	254	DUF1632: CEO family (DUF1632); InterPro: IPR012435	89.99
PF06379	344	RhaT: L-rhamnose-proton symport protein (RhaT); In	89.78
KOG1580|consensus	337		89.7
KOG4831|consensus	125		86.17
KOG1441|consensus	316		85.4
COG3238	150	Uncharacterized protein conserved in bacteria [Fun	85.25
PF05961	68	Chordopox_A13L: Chordopoxvirus A13L protein; Inter	84.53
KOG1581|consensus	327		84.48
COG4975	288	GlcU Putative glucose uptake permease [Carbohydrat	83.55
KOG2922|consensus	335		82.13
COG5070	309	VRG4 Nucleotide-sugar transporter [Carbohydrate tr	81.17

>KOG1583|consensus

Probab=100.00  E-value=4.5e-38  Score=270.49  Aligned_cols=265  Identities=52%  Similarity=0.880  Sum_probs=232.3

Q ss_pred             CCccccccchhHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhh
Q psy348            6 SLPVIIPRHINQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGII   85 (293)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~   85 (293)
                      +.+..+++-+.|+|.....+++..++++|++++||++.|.+.++|+.+++.+|++++++.|||++.+|+.+++++++|++
T Consensus        54 kf~~~k~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGii  133 (330)
T KOG1583|consen   54 KFFTVKPKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGII  133 (330)
T ss_pred             cccccCCCCchhhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhhe
Confidence            44556644449999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             heeeccCccccccCCCc--cccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHH
Q psy348           86 ICTIMSSQEIKKYGVSD--EEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFA  163 (293)
Q Consensus        86 i~~~~~~~~~~~~~~~~--~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l  163 (293)
                      ++.......... .+++  .+ +. .++-.|+..|+.+...|.+.+|..+++||...+|||.+|.|.++|+++.++|.|+
T Consensus       134 IcTl~s~~d~~~-~~~~l~~~-~~-~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Fl  210 (330)
T KOG1583|consen  134 ICTLFSSKDGRS-KLSGLDSG-SA-QSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFL  210 (330)
T ss_pred             eEEeecCcchhh-hhcccccC-cc-cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHH
Confidence            999775443221 1111  01 11 1123467899999999999999999999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHHhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhe
Q psy348          164 FLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIV  243 (293)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~  243 (293)
                      +..+++.++++....++.+..|-+  +...|..|.+++.+++.||.|+-+++.+..+++++|.+++.++|+.++.++|++
T Consensus       211 f~~~div~~~~~~~~se~~~~p~~--g~~vP~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~Sii  288 (330)
T KOG1583|consen  211 FMGDDIVSHWRLAFKSESYLIPLL--GFKVPSMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSII  288 (330)
T ss_pred             HhcchHHHHHHHHhcCcceecccc--CccccHHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheee
Confidence            988889999988877776666644  345889999999999999999999999999999999999999999999999999


Q ss_pred             eecCcccccchhhhhHHHHHHHHHhhhccccc
Q psy348          244 YFQNEFTLYHWTGTALVFVGTVIFTQLVPSLM  275 (293)
Q Consensus       244 ~fge~lt~~~~iG~~lv~~Gv~~Y~~~~~k~~  275 (293)
                      +|++|+|++||+|.++|+.|..+|+..+.+.|
T Consensus       289 yF~Npft~~h~lGa~lVF~Gt~~fa~~~~~~~  320 (330)
T KOG1583|consen  289 YFENPFTPWHWLGAALVFFGTLLFANVWNHPK  320 (330)
T ss_pred             EecCCCCHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence            99999999999999999999999999877765

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=100.00  E-value=1.2e-31  Score=244.00  Aligned_cols=231  Identities=35%  Similarity=0.615  Sum_probs=198.2

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCcc
Q psy348           15 INQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQE   94 (293)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~   94 (293)
                      ++++|+++++++.++..++|.+|+| +|+|+++++|+++|+++++++++++|||++++|+++++++++|++++..+|...
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~al~~-i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~  141 (303)
T PF08449_consen   63 PLKKYAILSFLFFLASVLSNAALKY-ISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSS  141 (303)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHh-CChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeeccccc
Confidence            3999999999999999999999999 999999999999999999999999999999999999999999999999887654


Q ss_pred             ccccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhh-----hHH
Q psy348           95 IKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLY-----KNL  169 (293)
Q Consensus        95 ~~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~-----~~~  169 (293)
                      .+..    +. ++.+     ...|++++++|.+++|.+++++|++.++++.++.|+++|++++++|...+..     ++.
T Consensus       142 ~~~~----~~-~~~~-----~~~G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~  211 (303)
T PF08449_consen  142 SSSS----NS-SSFS-----SALGIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEF  211 (303)
T ss_pred             cccc----cc-cccc-----chhHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence            3211    00 1111     1359999999999999999999999999999899999999999987654322     232


Q ss_pred             HHHHHHHhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcc
Q psy348          170 YEHWLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEF  249 (293)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~l  249 (293)
                      .+.+...              ...|..+..++.+++++++|+..++..++++||++.++++++|+++++++|+++||+++
T Consensus       212 ~~~~~f~--------------~~~p~~~~~l~~~s~~~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~  277 (303)
T PF08449_consen  212 RSAIRFI--------------SAHPSVLLYLLLFSLTGALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPL  277 (303)
T ss_pred             hHHHHHH--------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcC
Confidence            2222221              23455677788888888899999999999999999999999999999999999999999


Q ss_pred             cccchhhhhHHHHHHHHHhhh
Q psy348          250 TLYHWTGTALVFVGTVIFTQL  270 (293)
Q Consensus       250 t~~~~iG~~lv~~Gv~~Y~~~  270 (293)
                      ++.||+|+++++.|..+|++.
T Consensus       278 ~~~~~~G~~lv~~g~~~~~~~  298 (303)
T PF08449_consen  278 SPLQWIGIVLVFAGIFLYSYA  298 (303)
T ss_pred             ChHHHHHHHHhHHHHHHHHHh
Confidence            999999999999999998865

; GO: 0055085 transmembrane transport

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=99.95  E-value=1e-26  Score=215.51  Aligned_cols=238  Identities=16%  Similarity=0.227  Sum_probs=180.3

Q ss_pred             CCccccccch-hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhh
Q psy348            6 SLPVIIPRHI-NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGI   84 (293)
Q Consensus         6 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv   84 (293)
                      +.|++.+++. +++++++++++.......+.|+++ +++++++++|++.|+++++++++++|||++++++.+++++++|+
T Consensus       103 ~~~~~~~~~~~~~~llp~gl~~~~~~~~~~~sl~~-~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv  181 (350)
T PTZ00343        103 KIPRIKSLKLFLKNFLPQGLCHLFVHFGAVISMGL-GAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGV  181 (350)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHH
Confidence            3455543334 889999999988888888999999 99999999999999999999999999999999999999999999


Q ss_pred             hheeeccCccccccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC-----CCCcchhhhhhhhhH
Q psy348           85 IICTIMSSQEIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHG-----KYPYEALYYTHLLPL  159 (293)
Q Consensus        85 ~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~-----~~~~~~~~y~~~~~~  159 (293)
                      .+....|.+              ++      ..|++++++|++++|+++++.|+++++.+     .++.+...|..+++.
T Consensus       182 ~l~~~~~~~--------------~~------~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (350)
T PTZ00343        182 ALASVKELH--------------FT------WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIAS  241 (350)
T ss_pred             Hheecccch--------------hH------HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHH
Confidence            998754321              22      67999999999999999999999987653     223334444444443


Q ss_pred             HHHHHhh--hHHHHHHHHHhcC-CCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHH
Q psy348          160 PAFAFLY--KNLYEHWLIAVNS-TPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFV  236 (293)
Q Consensus       160 ~~~l~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~  236 (293)
                      .+.+++.  .|..+........ ...  +    .+.....+..++.+++..++.+...|++++++||+++++.+++||++
T Consensus       242 l~~lp~~~~~e~~~~~~~~~~~~~~~--~----~~~~~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~  315 (350)
T PTZ00343        242 LISLPLVLFFEGKKWVPVWTNYTANM--T----NYTKGIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVV  315 (350)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHhhhcc--c----ccchHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHH
Confidence            3322221  1111100000000 000  0    01122334455566777777777788899999999999999999999


Q ss_pred             HHhhhheeecCcccccchhhhhHHHHHHHHHhhh
Q psy348          237 SLLFSIVYFQNEFTLYHWTGTALVFVGTVIFTQL  270 (293)
Q Consensus       237 t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y~~~  270 (293)
                      ++++|+++|||++|+.+++|.++++.|+.+|+..
T Consensus       316 ~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~  349 (350)
T PTZ00343        316 IIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF  349 (350)
T ss_pred             HhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999865

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=99.95  E-value=1.2e-26  Score=211.04  Aligned_cols=227  Identities=12%  Similarity=0.170  Sum_probs=172.5

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccc
Q psy348           16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEI   95 (293)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~   95 (293)
                      ++.+++.+++...+..++|.+++| +|++++++++++.|+++++++++++|||++++++.+++++++|+++....+.   
T Consensus        65 ~~~~~~~g~~~~~~~~~~~~~l~~-~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~---  140 (302)
T TIGR00817        65 LKLLLPVAIVHTIGHVTSNVSLSK-VAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTEL---  140 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcc---
Confidence            888999999999999999999999 9999999999999999999999999999999999999999999987643221   


Q ss_pred             cccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHH
Q psy348           96 KKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLI  175 (293)
Q Consensus        96 ~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~  175 (293)
                                 +++      ..|++++++|+++++++.++.|+..++.+.++.+++.|++..+...+++.. ...++...
T Consensus       141 -----------~~~------~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~-~~~~~~~~  202 (302)
T TIGR00817       141 -----------SFN------WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPA-FITEGPPF  202 (302)
T ss_pred             -----------ccc------HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHH-HHHcchHH
Confidence                       122      579999999999999999999998774444677888998877654333321 11111100


Q ss_pred             Hh--cCCCCCCCcccccccchHHHHHHH-HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCccccc
Q psy348          176 AV--NSTPLPLPSYLSFISIPSIVFYLL-GNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLY  252 (293)
Q Consensus       176 ~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~  252 (293)
                      ..  ..+...      .......+...+ ....+.++.+..++..++++||+++++.++++|++++++|++++||++|+.
T Consensus       203 ~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~  276 (302)
T TIGR00817       203 LPHGFMQAIS------GVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQ  276 (302)
T ss_pred             HHHHHHHhhc------ccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchh
Confidence            00  000000      000112222222 222233344456677899999999999999999999999999999999999


Q ss_pred             chhhhhHHHHHHHHHhhh
Q psy348          253 HWTGTALVFVGTVIFTQL  270 (293)
Q Consensus       253 ~~iG~~lv~~Gv~~Y~~~  270 (293)
                      +++|.++++.|+.+|++.
T Consensus       277 ~~~G~~lil~Gv~l~~~~  294 (302)
T TIGR00817       277 QVFGTGIAIAGVFLYSRV  294 (302)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            999999999999998853

specificities overlap.

>KOG1580|consensus

Probab=99.95  E-value=1.4e-27  Score=201.65  Aligned_cols=223  Identities=22%  Similarity=0.384  Sum_probs=193.1

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccc
Q psy348           16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEI   95 (293)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~   95 (293)
                      .+.|...+.-|.+.++.+|.+++| +++|++.+-+++.|+++|++++++.|++++++++.-++++++|++++..-+....
T Consensus        85 ~~~YaAcs~sYLlAMVssN~Alq~-vpYPTqVlgKScKPIPVMilGVl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~  163 (337)
T KOG1580|consen   85 TKMYAACSASYLLAMVSSNQALQY-VPYPTQVLGKSCKPIPVMILGVLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVG  163 (337)
T ss_pred             chHHHHHHHHHHHHHHhccchhcc-cCCcHHHhcccCCCcceeeeehhhhcccccHHHHHHHHHHHHHHHHhhccccccC
Confidence            778999999999999999999999 9999999999999999999999999999999999999999999999998875432


Q ss_pred             cccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHH---HHHHhhhHHHHH
Q psy348           96 KKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLP---AFAFLYKNLYEH  172 (293)
Q Consensus        96 ~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~---~~l~~~~~~~~~  172 (293)
                            +.+|..       ..+|-++.++|.-++++.+..|+++.+.+..+..+||+|+|+++..   ..+.+.||++|.
T Consensus       164 ------g~e~~t-------~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF  230 (337)
T KOG1580|consen  164 ------GAEDKT-------FGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEF  230 (337)
T ss_pred             ------CCcccc-------cchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHH
Confidence                  111121       3789999999999999999999999998877778999999998853   346678998887


Q ss_pred             HHHHhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCccccc
Q psy348          173 WLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLY  252 (293)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~  252 (293)
                      +.+..+.              |.+|.-+.+.++++.+|+.++|..+...||++.|++++.|+.+|++.|+++|+++++..
T Consensus       231 ~yF~~Rh--------------P~~~~~l~l~ai~s~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~r  296 (337)
T KOG1580|consen  231 FYFVQRH--------------PYVFWDLTLLAIASCLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGR  296 (337)
T ss_pred             HHHHHhc--------------cHHHHHHHHHHHHHHhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHH
Confidence            6655443              34455455555666688889999999999999999999999999999999999999999


Q ss_pred             chhhhhHHHHHHHH
Q psy348          253 HWTGTALVFVGTVI  266 (293)
Q Consensus       253 ~~iG~~lv~~Gv~~  266 (293)
                      ||+|..+++.|...
T Consensus       297 QwlgtvlVF~aL~~  310 (337)
T KOG1580|consen  297 QWLGTVLVFSALTA  310 (337)
T ss_pred             HHHHHHHHHHHhhh
Confidence            99999999999854

>KOG1581|consensus

Probab=99.95  E-value=1.1e-26  Score=203.10  Aligned_cols=238  Identities=19%  Similarity=0.308  Sum_probs=198.7

Q ss_pred             ccccchhHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheee
Q psy348           10 IIPRHINQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTI   89 (293)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~   89 (293)
                      .+.+++|++|...++....+..|.+.||+| +|.|++.+.|++..+++|+++.+++|+|++.++++..+++.+|+.++..
T Consensus        77 ~~~~apl~~y~~is~tn~~s~~~~yeaLKy-vSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l  155 (327)
T KOG1581|consen   77 LSGVAPLYKYSLISFTNTLSSWCGYEALKY-VSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSL  155 (327)
T ss_pred             CCCCCchhHHhHHHHHhhcchHHHHHHHHh-ccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEE
Confidence            344555999999999999999999999999 9999999999999999999999999999999999999999999999998


Q ss_pred             ccCccccccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHH---HHHhh
Q psy348           90 MSSQEIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPA---FAFLY  166 (293)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~---~l~~~  166 (293)
                      .+.+.. +.+. +   ++.+      ..|+.++..+.+++++.+..|+++.++++.+++++|+|+|+++...   .++..
T Consensus       156 ~~~s~s-~~~~-g---~~ns------~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~q  224 (327)
T KOG1581|consen  156 FPNSDS-SSKS-G---RENS------PIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQ  224 (327)
T ss_pred             ecCCCC-cccc-C---CCCc------hHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcC
Confidence            865441 1111 1   1223      7899999999999999999999999999999999999999987532   23333


Q ss_pred             hHHHHHHHHHhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeec
Q psy348          167 KNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQ  246 (293)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fg  246 (293)
                      +.+.+.+.+..              ..|.++..+++.++++..|+..+|+.+++.||++.+.+.+.|+++++++|.+.||
T Consensus       225 g~~~~av~F~~--------------~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~  290 (327)
T KOG1581|consen  225 GHLLPAVSFIK--------------EHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFG  290 (327)
T ss_pred             CCCchHHHHHH--------------cChhHHHHHHHHHHhhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhC
Confidence            33334443332              2445666676666666688889999999999999999999999999999999999


Q ss_pred             CcccccchhhhhHHHHHHHHHhhhccccc
Q psy348          247 NEFTLYHWTGTALVFVGTVIFTQLVPSLM  275 (293)
Q Consensus       247 e~lt~~~~iG~~lv~~Gv~~Y~~~~~k~~  275 (293)
                      ++++..||+|..+++.|..+  ++..|.+
T Consensus       291 h~~s~~q~~g~~iVFg~i~l--~~~~k~~  317 (327)
T KOG1581|consen  291 HPLSSEQWLGVLIVFGGIFL--EILLKKK  317 (327)
T ss_pred             CccchhhccCeeeehHHHHH--HHHHHHh
Confidence            99999999999999999855  6666655

>KOG1441|consensus

Probab=99.94  E-value=1.2e-26  Score=209.06  Aligned_cols=223  Identities=17%  Similarity=0.295  Sum_probs=185.4

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccc
Q psy348           16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEI   95 (293)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~   95 (293)
                      ++..+++++++..+.+++|.+++| +|+|++|++|+++|+++.++++++.+|+++++.++++++++.|+++.+.+|.+  
T Consensus        83 ~~~llpl~~~~~~~~v~~n~Sl~~-v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~--  159 (316)
T KOG1441|consen   83 LRTLLPLGLVFCISHVLGNVSLSY-VPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELS--  159 (316)
T ss_pred             hHHHHHHHHHHHHHHHhcchhhhc-cchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeecccc--
Confidence            999999999999999999999999 99999999999999999999999999999999999999999999999987753  


Q ss_pred             cccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHH--HcCCCCcchhhhhhhhhHHHHH-HhhhHHHHH
Q psy348           96 KKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYK--THGKYPYEALYYTHLLPLPAFA-FLYKNLYEH  172 (293)
Q Consensus        96 ~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~--~~~~~~~~~~~y~~~~~~~~~l-~~~~~~~~~  172 (293)
                                  ++      ..|.+..+++.+..++++++.+++++  +.+.++.+++.|+..++...++ ++. +..+.
T Consensus       160 ------------fn------~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~-~~~~~  220 (316)
T KOG1441|consen  160 ------------FN------LFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFL-DYVEG  220 (316)
T ss_pred             ------------cc------HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchH-hhhcc
Confidence                        23      78999999999999999999999995  4556788999998877755444 221 11111


Q ss_pred             HHH-HhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccc
Q psy348          173 WLI-AVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTL  251 (293)
Q Consensus       173 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~  251 (293)
                      ... .....         .+... .+. .+.+.+.+++.|...|.+++++||+|.++.+++|.++.++.|+++|+|++|+
T Consensus       221 ~~~~~~~~~---------~~~~~-~~~-~~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~  289 (316)
T KOG1441|consen  221 NKFVGFLTA---------PWFVT-FLI-LLLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTF  289 (316)
T ss_pred             cceeeeecc---------ccchh-hHH-HHHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCch
Confidence            000 00000         11121 222 3333477888898999999999999999999999999999999999999999


Q ss_pred             cchhhhhHHHHHHHHHhhhc
Q psy348          252 YHWTGTALVFVGTVIFTQLV  271 (293)
Q Consensus       252 ~~~iG~~lv~~Gv~~Y~~~~  271 (293)
                      .+..|.++.+.|+++|++..
T Consensus       290 ~n~~G~~iai~Gv~~Y~~~k  309 (316)
T KOG1441|consen  290 LNALGYAIAILGVFLYSRAK  309 (316)
T ss_pred             hhHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999873

>KOG1582|consensus

Probab=99.93  E-value=4.9e-25  Score=189.64  Aligned_cols=226  Identities=25%  Similarity=0.350  Sum_probs=199.4

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccc
Q psy348           16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEI   95 (293)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~   95 (293)
                      ||.|..++++..+++.++|-++.| .++|++.++|+|..+++++.+.++-++|++...+.+..+.++|++++...|.+..
T Consensus       106 ~rtY~~la~~t~gtmGLsn~SlgY-LNYPtQviFKccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~s  184 (367)
T KOG1582|consen  106 WRTYVILAFLTVGTMGLSNGSLGY-LNYPTQVIFKCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTS  184 (367)
T ss_pred             hhHhhhhHhhhhhccccCcCcccc-ccCcHHHHHHhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccC
Confidence            999999999999999999999999 9999999999999999999999999999999999999999999999999987642


Q ss_pred             cccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHH---HHhhhHHHHH
Q psy348           96 KKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAF---AFLYKNLYEH  172 (293)
Q Consensus        96 ~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~---l~~~~~~~~~  172 (293)
                                +.++      +.|+.++-.|.+++|..+..||+.++.++.++.|+++|+..++.|..   +.+.|++.+.
T Consensus       185 ----------PNF~------~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ss~EmvfySy~iG~vflf~~mvlTge~f~a  248 (367)
T KOG1582|consen  185 ----------PNFN------LIGVMMISGALLADAVIGNVQEKAMKMNPASSSEMVFYSYGIGFVFLFAPMVLTGELFSA  248 (367)
T ss_pred             ----------CCcc------eeeHHHHHHHHHHHHHhhHHHHHHHhhCCCCcceEEEeeecccHHHHHHHHHhcccchhh
Confidence                      2355      89999999999999999999999999999888999999999887642   3457888887


Q ss_pred             HHHHhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCccccc
Q psy348          173 WLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLY  252 (293)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~  252 (293)
                      +++-.++|.             ....+.+.-++.+|+|+..+-..++..+|.++..+++.|+..|+++|+++|..|+|..
T Consensus       249 ~~fcaehp~-------------~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRKavTi~lSfllFsKPfT~q  315 (367)
T KOG1582|consen  249 WTFCAEHPV-------------RTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARKAVTILLSFLLFSKPFTEQ  315 (367)
T ss_pred             hHHHHhCcH-------------hHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHhHHHHHHHHHHHcCchHHH
Confidence            776544331             1344555556778899888888899999999999999999999999999999999999


Q ss_pred             chhhhhHHHHHHHHHhhhccc
Q psy348          253 HWTGTALVFVGTVIFTQLVPS  273 (293)
Q Consensus       253 ~~iG~~lv~~Gv~~Y~~~~~k  273 (293)
                      +.-|..+++.|+++  +.++|
T Consensus       316 y~~~gllv~lgI~L--n~ysk  334 (367)
T KOG1582|consen  316 YVWSGLLVVLGIYL--NMYSK  334 (367)
T ss_pred             HhhhhHHHHHHHHh--hcccC
Confidence            99999999999844  77766

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=99.92  E-value=4.8e-24  Score=194.32  Aligned_cols=232  Identities=18%  Similarity=0.195  Sum_probs=175.5

Q ss_pred             chhHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCc
Q psy348           14 HINQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQ   93 (293)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~   93 (293)
                      +++++|++++++...++.+.+.|++| +|++..+++.+++.+++++++++++|+|+++.|++|++++++|++++...|..
T Consensus        77 ~~~w~y~lla~~Dv~aN~~~v~a~~y-TsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~  155 (334)
T PF06027_consen   77 RPWWKYFLLALLDVEANYLVVLAYQY-TSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVL  155 (334)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhc-ccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccc
Confidence            34999999999999999999999999 99999999999999999999999999999999999999999999999988865


Q ss_pred             cccccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHH
Q psy348           94 EIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHW  173 (293)
Q Consensus        94 ~~~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~  173 (293)
                      .+++.  ++   .+.      ...|++++++++.++|+++|++|++.++.+  ..+.+....++++.+..+.. .+.| .
T Consensus       156 ~~~~~--~~---~~~------~i~GDll~l~~a~lya~~nV~~E~~v~~~~--~~~~lg~~Glfg~ii~~iq~-~ile-~  220 (334)
T PF06027_consen  156 SGSDS--SS---GSN------PILGDLLALLGAILYAVSNVLEEKLVKKAP--RVEFLGMLGLFGFIISGIQL-AILE-R  220 (334)
T ss_pred             ccccC--CC---CCc------cchhHHHHHHHHHHHHHHHHHHHHhcccCC--HHHHHHHHHHHHHHHHHHHH-Hhee-h
Confidence            42211  00   111      289999999999999999999999988764  34555555555543322211 1111 1


Q ss_pred             HHHhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccc
Q psy348          174 LIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYH  253 (293)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~  253 (293)
                      ...+.   .       .+. +..+.+.+..+++.++....+-..++..||+..++......+.+++.++++||+++++..
T Consensus       221 ~~i~~---~-------~w~-~~~~~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly  289 (334)
T PF06027_consen  221 SGIES---I-------HWT-SQVIGLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLY  289 (334)
T ss_pred             hhhhc---c-------CCC-hhhHHHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHH
Confidence            11111   1       111 122333333333333333344457899999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHHHHHhhhcc
Q psy348          254 WTGTALVFVGTVIFTQLVP  272 (293)
Q Consensus       254 ~iG~~lv~~Gv~~Y~~~~~  272 (293)
                      ++|.++++.|.++|+...+
T Consensus       290 ~~af~lIiiG~vvy~~~~~  308 (334)
T PF06027_consen  290 ILAFALIIIGFVVYNLAES  308 (334)
T ss_pred             HHHHHHHHHHhheEEccCC
Confidence            9999999999999985433

Some of the sequences in this family are annotated as putative membrane proteins.

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=99.90  E-value=2.4e-22  Score=186.19  Aligned_cols=248  Identities=11%  Similarity=0.084  Sum_probs=165.6

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHH------hccccChhhhhHHhhhhhhhhheee
Q psy348           16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIII------LKKVYTLDKYVSVIMITLGIIICTI   89 (293)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~------l~~~~~~~~~~~i~l~~~Gv~i~~~   89 (293)
                      +..+...+++......+.+.+++| +|++...++.++.|++++++++++      +|||+++++++|+++.++|+.+...
T Consensus        78 ~~~l~l~g~~g~~~~~~~~~gl~~-tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~  156 (358)
T PLN00411         78 LSKIGLLGFLGSMYVITGYIGIEY-SNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIF  156 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh-ccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHH
Confidence            445666666554566689999999 999999999999999999999999      6999999999999999999998765


Q ss_pred             ccCccccccC--------CCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhh-HH
Q psy348           90 MSSQEIKKYG--------VSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLP-LP  160 (293)
Q Consensus        90 ~~~~~~~~~~--------~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~-~~  160 (293)
                      .+.......+        ....+ +..+  +-+...|++++++|+++||+|.+.+++..++++. .....++...++ ++
T Consensus       157 ~~g~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~-~~~~t~~~~~~~~~~  232 (358)
T PLN00411        157 YHGPRVFVASSPPYLNFRQLSPP-LSSS--NSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPA-AFTVSFLYTVCVSIV  232 (358)
T ss_pred             ccCcccccccccccccccccccc-cCCC--cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc-HhHHHHHHHHHHHHH
Confidence            3221100000        00000 0000  0013679999999999999999999999888754 223333433332 23


Q ss_pred             HHHHhhhHHHHHHHHHhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhh
Q psy348          161 AFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLF  240 (293)
Q Consensus       161 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~il  240 (293)
                      ...+.  ...+..    ....+..     .+ ....+..+. .++...++...+++++++.+|.++++..++.|+++.++
T Consensus       233 ~~~~~--l~~~~~----~~~~~~~-----~~-~~~~~~i~y-~~i~t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~ll  299 (358)
T PLN00411        233 TSMIG--LVVEKN----NPSVWII-----HF-DITLITIVT-MAIITSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVM  299 (358)
T ss_pred             HHHHH--HHHccC----Cccccee-----cc-chHHHHHHH-HHHHHHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHH
Confidence            22210  111100    0000000     01 112222222 22222356667888999999999999999999999999


Q ss_pred             hheeecCcccccchhhhhHHHHHHHHHhhhccccccccccccc
Q psy348          241 SIVYFQNEFTLYHWTGTALVFVGTVIFTQLVPSLMGMFGEKTK  283 (293)
Q Consensus       241 s~~~fge~lt~~~~iG~~lv~~Gv~~Y~~~~~k~~~~~~~~~~  283 (293)
                      |++++||++++.+++|.++++.|+++-+  ++|++|-++|.+.
T Consensus       300 g~l~LgE~lt~~~~iG~~LIl~Gv~l~~--~~~~~~~~~~~~~  340 (358)
T PLN00411        300 GAIFLNDSLYLGCLIGGILITLGFYAVM--WGKANEEKDQLLS  340 (358)
T ss_pred             HHHHhCCCCcHHHHHHHHHHHHHHHHHH--hhhhhhhhhcccC
Confidence            9999999999999999999999997743  4454443333333

>KOG1442|consensus

Probab=99.87  E-value=2e-23  Score=180.02  Aligned_cols=245  Identities=16%  Similarity=0.227  Sum_probs=188.9

Q ss_pred             CCccccccch-hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhh
Q psy348            6 SLPVIIPRHI-NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGI   84 (293)
Q Consensus         6 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv   84 (293)
                      +.|.++-+-. .|+.+++++.+.+++.++|+||+| +++++|++-|++..+|+++++++++|+|.+.....+|.+++.|.
T Consensus        91 tfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~y-VgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF  169 (347)
T KOG1442|consen   91 TFPSLQLDLATARQVLPLSVVFILMISFNNLCLKY-VGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGF  169 (347)
T ss_pred             ccCcccccHHHHHhhcchhheeeeehhccceehhh-cceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehh
Confidence            3444554433 889999999999999999999999 99999999999999999999999999999999999999999998


Q ss_pred             hheeeccCccccccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHH
Q psy348           85 IICTIMSSQEIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAF  164 (293)
Q Consensus        85 ~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~  164 (293)
                      -+-.-.|...           +..+      ..|.++.+.|.++-|+..++.++.....+..-+.+.+|+|..+..++++
T Consensus       170 ~lGvdqE~~~-----------~~ls------~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflp  232 (347)
T KOG1442|consen  170 GLGVDQEGST-----------GTLS------WIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLP  232 (347)
T ss_pred             eecccccccc-----------Cccc------hhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHH
Confidence            6554333211           2233      6899999999999999999999777666656688999999888665544


Q ss_pred             ---hhhHHHHHHHHHhcCCCCCCCcccccccch--HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHh
Q psy348          165 ---LYKNLYEHWLIAVNSTPLPLPSYLSFISIP--SIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLL  239 (293)
Q Consensus       165 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~i  239 (293)
                         +.|++.+.+.       +  |      ..|  ..|..+.+++++++..+..-..-++.+||+|+++.++.|.+...+
T Consensus       233 ll~lnge~~~v~~-------~--~------~l~a~~Fw~~mtLsglfgF~mgyvTg~QIK~TSplThnISgTAka~aQTv  297 (347)
T KOG1442|consen  233 LLILNGEFQAVVG-------F--P------HLPAIKFWILMTLSGLFGFAMGYVTGWQIKVTSPLTHNISGTAKAAAQTV  297 (347)
T ss_pred             HHHHcchHHHHcC-------c--c------cchHHHHHHHHHHHHHHHHHhhheeeEEEEecccceeeecHhHHHHHHHH
Confidence               3444433221       1  0      122  345555566666643222223348999999999999999999999


Q ss_pred             hhheeecCcccccchhhhhHHHHHHHHHhhhccccccccccccchh
Q psy348          240 FSIVYFQNEFTLYHWTGTALVFVGTVIFTQLVPSLMGMFGEKTKKS  285 (293)
Q Consensus       240 ls~~~fge~lt~~~~iG~~lv~~Gv~~Y~~~~~k~~~~~~~~~~~~  285 (293)
                      +++.+.+|..+...|-|-.+++.|...|++.  |.+|++.+-...+
T Consensus       298 lAv~~y~E~ks~lwwtsn~~vLvgs~~YT~v--k~~em~~~~~~~s  341 (347)
T KOG1442|consen  298 LAVAYYSETKSGLWWTSNIVVLVGSLAYTLV--KEHEMRKASAQRS  341 (347)
T ss_pred             HHHHHHHHHhhhheeeeeEEEEehhHHHHHH--HHHHHHhhccCCC
Confidence            9999999999999999999999999999987  4444443333333

>KOG1444|consensus

Probab=99.86  E-value=9.5e-21  Score=167.79  Aligned_cols=223  Identities=16%  Similarity=0.251  Sum_probs=188.4

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccc
Q psy348           16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEI   95 (293)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~   95 (293)
                      .|+++|++++|.++.+.+..+++| +++|.++++|..+|++|++...+++|+|+++..|.++..+.+|.......|.+. 
T Consensus        77 ~kk~~P~~~lf~~~i~t~~~slk~-lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf-  154 (314)
T KOG1444|consen   77 AKKWFPVSLLFVGMLFTGSKSLKY-LNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSF-  154 (314)
T ss_pred             HHHHccHHHHHHHHHHHccccccc-cCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhcccccee-
Confidence            889999999999999999999999 999999999999999999999999999999999999999999998888776432 


Q ss_pred             cccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHh---hhHHHHH
Q psy348           96 KKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFL---YKNLYEH  172 (293)
Q Consensus        96 ~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~---~~~~~~~  172 (293)
                                   +      ..|+.+++.+++..+.+.++.|+..+..+.+.+++++|.++.++|.+.+.   .+|.. .
T Consensus       155 -------------~------~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~-~  214 (314)
T KOG1444|consen  155 -------------N------LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELD-A  214 (314)
T ss_pred             -------------c------chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchH-H
Confidence                         2      56999999999999999999999888777777899999999998765443   34432 1


Q ss_pred             HHHHhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCccccc
Q psy348          173 WLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLY  252 (293)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~  252 (293)
                      ..  .+.+         .+..+..+..+.++|+.++.-.++.+++.+.+||++.+++|......+.+.+.+++|+++++.
T Consensus       215 l~--~~~~---------~~~~~~~~~~~~lScv~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~  283 (314)
T KOG1444|consen  215 LS--LNFD---------NWSDSSVLVVMLLSCVMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFL  283 (314)
T ss_pred             HH--hhcc---------cccchhHHHHHHHHHHHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechh
Confidence            11  1111         133556777888888888777778888999999999999996666666677777777799999


Q ss_pred             chhhhhHHHHHHHHHhhhc
Q psy348          253 HWTGTALVFVGTVIFTQLV  271 (293)
Q Consensus       253 ~~iG~~lv~~Gv~~Y~~~~  271 (293)
                      ..+|..+.+.|.++|++..
T Consensus       284 n~~gll~~~~ggv~Y~~~~  302 (314)
T KOG1444|consen  284 NVIGLLVGFFGGVLYSYAT  302 (314)
T ss_pred             hhHHHHHHhhhhhHHhhhh
Confidence            9999999999999999763

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=99.86  E-value=7.3e-20  Score=166.28  Aligned_cols=223  Identities=13%  Similarity=0.147  Sum_probs=154.0

Q ss_pred             hHHHHHHHHH-HHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCcc
Q psy348           16 NQHQIELVVM-FFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQE   94 (293)
Q Consensus        16 ~~~~~~~~~~-~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~   94 (293)
                      ++..+..+++ ..+...+.+.+++|+++++...++.++.|+++++++++++|||+++++++++++.++|+.+...++...
T Consensus        58 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~  137 (299)
T PRK11453         58 LNLLLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNG  137 (299)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCC
Confidence            4444444443 234445677888874578899999999999999999999999999999999999999999887442111


Q ss_pred             ccccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCC-CCcchhhhhhhhhH-HHHHHhhhHHHHH
Q psy348           95 IKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGK-YPYEALYYTHLLPL-PAFAFLYKNLYEH  172 (293)
Q Consensus        95 ~~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~-~~~~~~~y~~~~~~-~~~l~~~~~~~~~  172 (293)
                                 .+.+      ..|+++.++++++++.+.+++++..++++. .......+....+. |.... . ...+.
T Consensus       138 -----------~~~~------~~G~~l~l~aal~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~  198 (299)
T PRK11453        138 -----------QHVA------MLGFMLTLAAAFSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVA-S-LILDG  198 (299)
T ss_pred             -----------cchh------HHHHHHHHHHHHHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHH-H-HHhcC
Confidence                       1111      579999999999999999999998665432 11122233333322 22111 0 00110


Q ss_pred             HHHHhcCCCCCCCcccccccchHHHHHH-HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccc
Q psy348          173 WLIAVNSTPLPLPSYLSFISIPSIVFYL-LGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTL  251 (293)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~  251 (293)
                      ....  .+++.       ..++..|..+ ....++..++...++..+++.++.+.++...++|+++.++|++++||+++.
T Consensus       199 ~~~~--~~~~~-------~~~~~~~~~l~~l~i~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~  269 (299)
T PRK11453        199 SATM--IHSLV-------TIDMTTILSLMYLAFVATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTG  269 (299)
T ss_pred             chhh--hhhhc-------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccH
Confidence            0000  00000       0122333333 333344446666777889999999999999999999999999999999999


Q ss_pred             cchhhhhHHHHHHHH
Q psy348          252 YHWTGTALVFVGTVI  266 (293)
Q Consensus       252 ~~~iG~~lv~~Gv~~  266 (293)
                      .+++|.++++.|+++
T Consensus       270 ~~~iG~~lI~~gv~l  284 (299)
T PRK11453        270 LQFLGAVLIMAGLYI  284 (299)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999966

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=99.84  E-value=2e-19  Score=159.53  Aligned_cols=212  Identities=11%  Similarity=-0.021  Sum_probs=160.0

Q ss_pred             hHHHHHHHHH-HHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCcc
Q psy348           16 NQHQIELVVM-FFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQE   94 (293)
Q Consensus        16 ~~~~~~~~~~-~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~   94 (293)
                      ++.++..+.+ ..++..+.+.|++| ++++...++.++.|+++++++.+++|||++++++.+++++++|+.+...++.. 
T Consensus        46 ~~~~~~~~~~~~~l~~~~~~~a~~~-~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~-  123 (260)
T TIGR00950        46 LLRLLLLGALQIGVFYVLYFVAVKR-LPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNL-  123 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-cChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcc-
Confidence            5555666554 67888999999999 99999999999999999999999999999999999999999999997644311 


Q ss_pred             ccccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHH
Q psy348           95 IKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWL  174 (293)
Q Consensus        95 ~~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~  174 (293)
                                 + .+      ..|+.+.++++++++.+.++.|+..++.+.++.....+...++....++.. .      
T Consensus       124 -----------~-~~------~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~------  178 (260)
T TIGR00950       124 -----------S-IN------PAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFA-W------  178 (260)
T ss_pred             -----------c-cc------HHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHH-H------
Confidence                       1 11      679999999999999999999998876654333333334444433322211 0      


Q ss_pred             HHhcCCCCCCCcccccccchHHHHHH-HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccc
Q psy348          175 IAVNSTPLPLPSYLSFISIPSIVFYL-LGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYH  253 (293)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~  253 (293)
                       . ..+...       . .+..+..+ ....+...++...++.++++.++.++++...++|+++.+++++++||++++.+
T Consensus       179 -~-~~~~~~-------~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~  248 (260)
T TIGR00950       179 -F-LGPNPQ-------A-LSLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQ  248 (260)
T ss_pred             -h-cCCCCC-------c-chHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence             0 011110       1 12233322 23333344666777889999999999999999999999999999999999999


Q ss_pred             hhhhhHHHHHH
Q psy348          254 WTGTALVFVGT  264 (293)
Q Consensus       254 ~iG~~lv~~Gv  264 (293)
                      ++|.++++.|+
T Consensus       249 ~~G~~li~~g~  259 (260)
T TIGR00950       249 LIGGALIIAAV  259 (260)
T ss_pred             HHHHHHHHHhc
Confidence            99999999986

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=99.83  E-value=1.8e-19  Score=158.60  Aligned_cols=228  Identities=14%  Similarity=0.162  Sum_probs=164.5

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccc
Q psy348           16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEI   95 (293)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~   95 (293)
                      ..++.+++++|...+.+.+.++++ +|++++|++++++.++|++++++++|||.+++||.++++.++|+++...++....
T Consensus        17 ~~~~~vPA~lY~~qn~L~~~al~~-ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~   95 (244)
T PF04142_consen   17 TLKLAVPALLYAIQNNLQFVALSY-LDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSS   95 (244)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcccc
Confidence            678889999999999999999998 9999999999999999999999999999999999999999999999987765432


Q ss_pred             cccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHH
Q psy348           96 KKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLI  175 (293)
Q Consensus        96 ~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~  175 (293)
                      +....+..++++   .......|+++++++++++++.+|+.|+++|+.+.+.+.-......++++..++.  ....+...
T Consensus        96 ~~~~~~~~~~~~---~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~--~~~~~~~~  170 (244)
T PF04142_consen   96 DNSSSSSVHHDA---SNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLA--LLLSDGSA  170 (244)
T ss_pred             cccccccccccc---ccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHH--Hhcccccc
Confidence            111000000000   0112379999999999999999999999999876433222222233343332221  00111111


Q ss_pred             HhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchh
Q psy348          176 AVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWT  255 (293)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~i  255 (293)
                      ..+..     ++. ++ ++..|..++..++++.    .+-..+|+.+....+....+.-+++.++++++||.++|....+
T Consensus       171 ~~~~g-----~f~-G~-~~~~~~~i~~~a~gGl----lva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~l  239 (244)
T PF04142_consen  171 ISESG-----FFH-GY-SWWVWIVIFLQAIGGL----LVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLL  239 (244)
T ss_pred             cccCC-----chh-hc-chHHHHHHHHHHHhhH----HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhh
Confidence            11111     110 11 2345666666666552    2335799999999999999999999999999999999999999


Q ss_pred             hhhHH
Q psy348          256 GTALV  260 (293)
Q Consensus       256 G~~lv  260 (293)
                      |..+|
T Consensus       240 g~~~V  244 (244)
T PF04142_consen  240 GAALV  244 (244)
T ss_pred             heecC
Confidence            98764

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK11689 aromatic amino acid exporter; Provisional

Probab=99.83  E-value=2.7e-19  Score=162.21  Aligned_cols=220  Identities=9%  Similarity=0.044  Sum_probs=151.8

Q ss_pred             HHHHHHHHHHHHHHhhhhhhcc---cchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCcc
Q psy348           18 HQIELVVMFFITNVCNNYAFDF---NIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQE   94 (293)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~L~y---~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~   94 (293)
                      ..+.-++.+.....+.+.+++|   +.++....++.++.|+++++++++++|||++++++.++++.++|+++...++...
T Consensus        63 ~~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~  142 (295)
T PRK11689         63 YLLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGL  142 (295)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccc
Confidence            3333344455667777777765   1466677899999999999999999999999999999999999999987654211


Q ss_pred             ccccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHH
Q psy348           95 IKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWL  174 (293)
Q Consensus        95 ~~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~  174 (293)
                      .. .+. ..+ .+.+      ..|++++++|++++|.++++.|+..++++  +...  +....+..+ .+.  ...+   
T Consensus       143 ~~-~~~-~~~-~~~~------~~G~~~~l~aa~~~A~~~v~~k~~~~~~~--~~~~--~~~~~~~~l-~~~--~~~~---  203 (295)
T PRK11689        143 SL-AEL-INN-IASN------PLSYGLAFIGAFIWAAYCNVTRKYARGKN--GITL--FFILTALAL-WIK--YFLS---  203 (295)
T ss_pred             hh-hhh-hhc-cccC------hHHHHHHHHHHHHHHHHHHHHhhccCCCC--chhH--HHHHHHHHH-HHH--HHHh---
Confidence            00 000 000 0111      56999999999999999999998765443  3222  111111111 110  0000   


Q ss_pred             HHhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccch
Q psy348          175 IAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHW  254 (293)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~  254 (293)
                         ..+...        ..+..|..++..++...+++..+++.+++.+|.+.++..+++|+++++++++++||++++.++
T Consensus       204 ---~~~~~~--------~~~~~~~~l~~~~~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~  272 (295)
T PRK11689        204 ---PQPAMV--------FSLPAIIKLLLAAAAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFW  272 (295)
T ss_pred             ---cCcccc--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHH
Confidence               111110        122344444444444556777888999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHH
Q psy348          255 TGTALVFVGTVIF  267 (293)
Q Consensus       255 iG~~lv~~Gv~~Y  267 (293)
                      +|.++++.|+++-
T Consensus       273 iG~~lI~~gv~~~  285 (295)
T PRK11689        273 QGVAMVTAGSLLC  285 (295)
T ss_pred             HHHHHHHHhHHHH
Confidence            9999999998663

>KOG1443|consensus

Probab=99.81  E-value=1.4e-19  Score=158.72  Aligned_cols=227  Identities=15%  Similarity=0.301  Sum_probs=174.6

Q ss_pred             hHHHH----HHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeecc
Q psy348           16 NQHQI----ELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMS   91 (293)
Q Consensus        16 ~~~~~----~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~   91 (293)
                      |++++    +.++.-.+...++|++++| ++.++|+|.|+++++|+.+++.+|--||+++.-.+.++++-+|+.++..-+
T Consensus        80 w~~~Lr~~aPtalata~DIGLSN~sl~y-VtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~Ks  158 (349)
T KOG1443|consen   80 WRDYLRRLAPTALATALDIGLSNWSLEY-VTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKS  158 (349)
T ss_pred             HHHHHHHhhhhhhhhhcccccccceeee-eeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecc
Confidence            66666    9999999999999999999 999999999999999999999999999999999999999999999999876


Q ss_pred             CccccccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcC---CCCcchhhhhhhh-hHHHHHHhhh
Q psy348           92 SQEIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHG---KYPYEALYYTHLL-PLPAFAFLYK  167 (293)
Q Consensus        92 ~~~~~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~---~~~~~~~~y~~~~-~~~~~l~~~~  167 (293)
                      .+              ++      ..|..++..|.++.++.+.+.+.++++.+   .+|..++++.+.. +++++.  .+
T Consensus       159 Tq--------------f~------i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~--~~  216 (349)
T KOG1443|consen  159 TQ--------------FN------IEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLP--LS  216 (349)
T ss_pred             cc--------------ee------ehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHH--HH
Confidence            43              33      78999999999999999999999998876   3677777765543 222211  11


Q ss_pred             HHHHHHHHHhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecC
Q psy348          168 NLYEHWLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQN  247 (293)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge  247 (293)
                      .+.|+......++.+.  .+. ..........+.+.+..+++.-...|..+.+++.++.|+++..+.+.+.+++..+.+|
T Consensus       217 l~fEG~~~~~~s~~f~--~~d-~~~~~rv~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d  293 (349)
T KOG1443|consen  217 LLFEGLHLITSSSIFR--FQD-TGLILRVIGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKD  293 (349)
T ss_pred             HHHcccccchhhhHHH--hcC-ccHHHHHHHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhc
Confidence            2223222111111110  000 0011122334444455555444556778999999999999999999999999999999


Q ss_pred             cccccchhhhhHHHHHHHHHh
Q psy348          248 EFTLYHWTGTALVFVGTVIFT  268 (293)
Q Consensus       248 ~lt~~~~iG~~lv~~Gv~~Y~  268 (293)
                      .++..+|.|..+++.|+..|.
T Consensus       294 ~ls~lN~~Gl~i~~agi~~~~  314 (349)
T KOG1443|consen  294 QLSLLNWLGLAICLAGILLHR  314 (349)
T ss_pred             chhhhHHHHHHHHHHHHHHhc
Confidence            999999999999999999884

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=99.81  E-value=1e-18  Score=158.51  Aligned_cols=206  Identities=14%  Similarity=0.138  Sum_probs=144.9

Q ss_pred             HHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccccccCC
Q psy348           21 ELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEIKKYGV  100 (293)
Q Consensus        21 ~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~~~~~~  100 (293)
                      .-++....+..+.++++++ ++++...++.++.|+++++++++++|||++++++.++++.++|+++....+.        
T Consensus        78 ~~~~~~~~~~~~~~~a~~~-~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~--------  148 (296)
T PRK15430         78 VSAVLIGGNWLLFIWAVNN-HHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFG--------  148 (296)
T ss_pred             HHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcC--------
Confidence            3344577789999999998 9999999999999999999999999999999999999999999998753211        


Q ss_pred             CccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCC
Q psy348          101 SDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNST  180 (293)
Q Consensus       101 ~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~  180 (293)
                           +         .  ..+.+++++++|.|.++.|+...+    +.......+....+...+..   ..   .. ..+
T Consensus       149 -----~---------~--~~~~l~aa~~~a~~~i~~r~~~~~----~~~~~~~~~~~~~~~~~~~~---~~---~~-~~~  201 (296)
T PRK15430        149 -----S---------L--PIIALGLAFSFAFYGLVRKKIAVE----AQTGMLIETMWLLPVAAIYL---FA---IA-DSS  201 (296)
T ss_pred             -----C---------c--cHHHHHHHHHHHHHHHHHHhcCCC----CchhHHHHHHHHHHHHHHHH---HH---Hc-cCC
Confidence                 0         1  134677889999999998775321    11111222222222211110   00   00 000


Q ss_pred             CCCCCcccccccchH-HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhH
Q psy348          181 PLPLPSYLSFISIPS-IVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTAL  259 (293)
Q Consensus       181 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~l  259 (293)
                      ..  +.    ...+. .+..++..++.+.+++.+++..+++.+|.+.++...++|+++.++|++++||++++.+++|.++
T Consensus       202 ~~--~~----~~~~~~~~~~~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~l  275 (296)
T PRK15430        202 TS--HM----GQNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAF  275 (296)
T ss_pred             cc--cc----cCCcHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            00  00    01121 2233333333344667788889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHh
Q psy348          260 VFVGTVIFT  268 (293)
Q Consensus       260 v~~Gv~~Y~  268 (293)
                      ++.|+.+..
T Consensus       276 I~~~~~v~~  284 (296)
T PRK15430        276 IWVALAIFV  284 (296)
T ss_pred             HHHHHHHHH
Confidence            988776654

>KOG2234|consensus

Probab=99.79  E-value=2.7e-18  Score=154.34  Aligned_cols=228  Identities=14%  Similarity=0.212  Sum_probs=170.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccc
Q psy348           16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEI   95 (293)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~   95 (293)
                      ..+..+++++|...|.+.+.++.+ .|+++|++..+++...|++++.++++||.+++||.++++.++|+++......++.
T Consensus        92 ~lk~~vPa~iYalqNnl~yval~~-ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~  170 (345)
T KOG2234|consen   92 TLKVSVPALIYALQNNLQYVALSN-LDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPT  170 (345)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHhc-CCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCC
Confidence            667889999999999999999997 9999999999999999999999999999999999999999999999985443321


Q ss_pred             cccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCc--chhhhhhhhhHHHHHH-hhhHHHHH
Q psy348           96 KKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPY--EALYYTHLLPLPAFAF-LYKNLYEH  172 (293)
Q Consensus        96 ~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~--~~~~y~~~~~~~~~l~-~~~~~~~~  172 (293)
                      .+.   ++..++.+      ..|...++.+++.+++.+++.|+++|+.+.+.+  ++..|  .++++..+. ...   .+
T Consensus       171 ~a~---~~~~~~n~------~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~--~~g~~f~~l~~~~---~d  236 (345)
T KOG2234|consen  171 GAK---SESSAQNP------FLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLY--FFGILFNLLTILL---QD  236 (345)
T ss_pred             Ccc---CCCcccch------hhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH--HHHHHHHHHHHhh---cc
Confidence            110   01101122      799999999999999999999999997764322  12222  233322111 111   11


Q ss_pred             HHHHhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCccccc
Q psy348          173 WLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLY  252 (293)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~  252 (293)
                      ....   .+.  .++ +++ +...|..++.+++++ ++   +...+++.+.........+..+++.+.|+.+||.++|..
T Consensus       237 ~~~i---~~~--gff-~G~-s~~vw~vVl~~a~gG-Ll---vs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~  305 (345)
T KOG2234|consen  237 GEAI---NEY--GFF-YGY-SSIVWLVVLLNAVGG-LL---VSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLY  305 (345)
T ss_pred             cccc---ccC--Ccc-ccc-cHHHHHHHHHHhccc-hh---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHH
Confidence            1000   000  111 012 334677777887777 32   335799999999999999999999999999999999999


Q ss_pred             chhhhhHHHHHHHHHhh
Q psy348          253 HWTGTALVFVGTVIFTQ  269 (293)
Q Consensus       253 ~~iG~~lv~~Gv~~Y~~  269 (293)
                      ..+|+.+|+..+.+|+.
T Consensus       306 F~lG~~lVi~Si~lY~~  322 (345)
T KOG2234|consen  306 FLLGALLVILSIFLYSL  322 (345)
T ss_pred             HHHHHHHHHHHHHHhhc
Confidence            99999999999999994

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=99.79  E-value=4.2e-18  Score=154.19  Aligned_cols=214  Identities=12%  Similarity=0.052  Sum_probs=154.9

Q ss_pred             hHHHHHHHHHH-HHHHHhhhhhh-cccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCc
Q psy348           16 NQHQIELVVMF-FITNVCNNYAF-DFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQ   93 (293)
Q Consensus        16 ~~~~~~~~~~~-~~~~~~~~~~L-~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~   93 (293)
                      ++.....+.+. .....+.+.+. ++ ++++...++.++.|+++++++++ +|||++++++.++++.++|+.+...++..
T Consensus        68 ~~~~~~~g~~~~~~~~~~~~~~~~~~-~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~  145 (292)
T PRK11272         68 WLNAALIGLLLLAVGNGMVTVAEHQN-VPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNL  145 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcc-CcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCccc
Confidence            55566666653 45677888888 87 99999999999999999999975 69999999999999999999887543211


Q ss_pred             cccccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHH
Q psy348           94 EIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHW  173 (293)
Q Consensus        94 ~~~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~  173 (293)
                                  + .+      ..|+++.+++++++|.+.+..|+..++.   +.....+....+.+...+... .    
T Consensus       146 ------------~-~~------~~G~l~~l~a~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-~----  198 (292)
T PRK11272        146 ------------S-GN------PWGAILILIASASWAFGSVWSSRLPLPV---GMMAGAAEMLAAGVVLLIASL-L----  198 (292)
T ss_pred             ------------c-cc------hHHHHHHHHHHHHHHHHHHHHHhcCCCc---chHHHHHHHHHHHHHHHHHHH-H----
Confidence                        0 11      5799999999999999999998764321   223344444444333222110 0    


Q ss_pred             HHHhcCCCCCCCcccccccchHHHHHH-HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCccccc
Q psy348          174 LIAVNSTPLPLPSYLSFISIPSIVFYL-LGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLY  252 (293)
Q Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~  252 (293)
                         ...+...       ..++..|..+ ....++..++...+++.+++.++.+.++...++|+.+.+++++++||++|+.
T Consensus       199 ---~~~~~~~-------~~~~~~~~~i~~l~i~~s~~~~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~  268 (292)
T PRK11272        199 ---SGERLTA-------LPTLSGFLALGYLAVFGSIIAISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPI  268 (292)
T ss_pred             ---cCCcccc-------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHH
Confidence               0111000       0122233333 3333344466677888999999999999999999999999999999999999


Q ss_pred             chhhhhHHHHHHHHHh
Q psy348          253 HWTGTALVFVGTVIFT  268 (293)
Q Consensus       253 ~~iG~~lv~~Gv~~Y~  268 (293)
                      +++|.++++.|+++.+
T Consensus       269 ~iiG~~lIi~gv~~~~  284 (292)
T PRK11272        269 EWLALGVIVFAVVLVT  284 (292)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999997743

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=99.77  E-value=5.8e-17  Score=146.84  Aligned_cols=209  Identities=13%  Similarity=0.055  Sum_probs=148.6

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccc
Q psy348           16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEI   95 (293)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~   95 (293)
                      ++..+..+.++...+.+.+++++| +|++...++..+.|+++++++    +||+++.  ..+.+.++|+.+....+... 
T Consensus        71 ~~~~~~~g~~~~~~~~~~~~al~~-~~~~~a~~l~~t~Pi~~~ll~----~~~~~~~--~~~~i~~~Gv~li~~~~~~~-  142 (293)
T PRK10532         71 RLPLLFYGVSLGGMNYLFYLSIQT-VPLGIAVALEFTGPLAVALFS----SRRPVDF--VWVVLAVLGLWFLLPLGQDV-  142 (293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHHHHh----cCChHHH--HHHHHHHHHHheeeecCCCc-
Confidence            566667777777888889999998 999999999999999998876    3666544  44667789998876332111 


Q ss_pred             cccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHH
Q psy348           96 KKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLI  175 (293)
Q Consensus        96 ~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~  175 (293)
                                ++.+      ..|+++.+++++++|.+.+..++..++++  +... .+...++.....+..        .
T Consensus       143 ----------~~~~------~~G~ll~l~aa~~~a~~~v~~r~~~~~~~--~~~~-~~~~~~~~~~l~~~~--------~  195 (293)
T PRK10532        143 ----------SHVD------LTGAALALGAGACWAIYILSGQRAGAEHG--PATV-AIGSLIAALIFVPIG--------A  195 (293)
T ss_pred             ----------ccCC------hHHHHHHHHHHHHHHHHHHHHHHHhccCC--chHH-HHHHHHHHHHHHHHH--------H
Confidence                      1112      57999999999999999999998876554  3333 333333322211110        0


Q ss_pred             HhcCCCCCCCcccccccchHHHHH-HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccch
Q psy348          176 AVNSTPLPLPSYLSFISIPSIVFY-LLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHW  254 (293)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~  254 (293)
                      ..... .        ..++..+.. +.+..+++.++...+++.+++.+|.++++...++|+++.++|++++||++++.++
T Consensus       196 ~~~~~-~--------~~~~~~~~~~l~lgv~~t~~~~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~  266 (293)
T PRK10532        196 LQAGE-A--------LWHWSILPLGLAVAILSTALPYSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQW  266 (293)
T ss_pred             HccCc-c--------cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHH
Confidence            00111 0        011222322 2333344446666778899999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHh
Q psy348          255 TGTALVFVGTVIFT  268 (293)
Q Consensus       255 iG~~lv~~Gv~~Y~  268 (293)
                      +|.++++.|+..++
T Consensus       267 iG~~lIl~~~~~~~  280 (293)
T PRK10532        267 LALGAIIAASMGST  280 (293)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998876

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=99.76  E-value=1.2e-17  Score=150.42  Aligned_cols=211  Identities=14%  Similarity=0.124  Sum_probs=151.8

Q ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCcccccc
Q psy348           19 QIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEIKKY   98 (293)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~~~~   98 (293)
                      ....+........+.+.++++ .|++....+.++.|+++.+++++++|||++++++.|+++++.|+.+....+...    
T Consensus        66 ~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~----  140 (281)
T TIGR03340        66 LAISAVANMVYFLGLAQAYHH-ADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQ----  140 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHhc-CChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccc----
Confidence            334444577788999999999 999999999999999999999999999999999999999999999876443211    


Q ss_pred             CCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhh---hhh-HHHHHHhhhHHHHHHH
Q psy348           99 GVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTH---LLP-LPAFAFLYKNLYEHWL  174 (293)
Q Consensus        99 ~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~---~~~-~~~~l~~~~~~~~~~~  174 (293)
                               .+      ..|+.+.++++++++.|.+..|+..++.+.. .....+..   ... .|.....   ...   
T Consensus       141 ---------~~------~~g~~~~l~aal~~a~~~i~~k~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---~~~---  198 (281)
T TIGR03340       141 ---------HR------RKAYAWALAAALGTAIYSLSDKAAALGVPAF-YSALGYLGIGFLAMGWPFLLLY---LKR---  198 (281)
T ss_pred             ---------cc------hhHHHHHHHHHHHHHHhhhhccccccchhcc-cccHHHHHHHHHHHHHHHHHHH---HHH---
Confidence                     11      4588889999999999999887654333211 12222221   111 2221110   000   


Q ss_pred             HHhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccch
Q psy348          175 IAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHW  254 (293)
Q Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~  254 (293)
                        ...+..        ......+..+....+.+.+++..++..+++.++...+....+.|+++.++|++++||+++..++
T Consensus       199 --~~~~~~--------~~~~~~~~~~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~  268 (281)
T TIGR03340       199 --HGRSMF--------PYARQILPSATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRL  268 (281)
T ss_pred             --hccchh--------hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHH
Confidence              011100        0111233334444444556667788899999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHH
Q psy348          255 TGTALVFVGTVI  266 (293)
Q Consensus       255 iG~~lv~~Gv~~  266 (293)
                      +|.++++.|+.+
T Consensus       269 iG~~lil~Gv~l  280 (281)
T TIGR03340       269 MGVCIIVAGLVV  280 (281)
T ss_pred             HHHHHHHHhHHh
Confidence            999999999864

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>KOG3912|consensus

Probab=99.73  E-value=6e-17  Score=140.55  Aligned_cols=239  Identities=17%  Similarity=0.254  Sum_probs=175.5

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccc
Q psy348           16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEI   95 (293)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~   95 (293)
                      ....+++++|..++..+.|.+|.+ ++++.+||+|....+||.+++..+++++.+.+||++++.+.+|++++...|....
T Consensus        86 p~lfl~Pal~Di~gsslm~vgL~l-TsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~  164 (372)
T KOG3912|consen   86 PVLFLPPALCDIAGSSLMYVGLNL-TSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLV  164 (372)
T ss_pred             cceecChHHHHHhhhHHHHHHHHH-hhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccc
Confidence            556678999999999999999999 9999999999999999999999999999999999999999999999998765432


Q ss_pred             cccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHH
Q psy348           96 KKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLI  175 (293)
Q Consensus        96 ~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~  175 (293)
                      +.+    .  ++.+    ....|+++++++.+.-|.+.++.|+.+++++..|.+...|..++++..+-.+. .....+  
T Consensus       165 ~~p----~--~d~s----~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~-i~m~yi--  231 (372)
T KOG3912|consen  165 TDP----Y--TDYS----SIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLA-IPMYYI--  231 (372)
T ss_pred             cCC----c--cccc----cchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHH-HHHhhe--
Confidence            211    1  1111    13899999999999999999999999999999898888888777743221100 000000  


Q ss_pred             HhcCCCCC------CCccc----ccccchHHHHHHHHHHHH-HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhee
Q psy348          176 AVNSTPLP------LPSYL----SFISIPSIVFYLLGNVLT-QYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVY  244 (293)
Q Consensus       176 ~~~~~~~~------~~~~~----~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~  244 (293)
                       ....++.      +++..    .....|.+...+....++ ++..... .+..+..|+++.++.-.+|..+-++++...
T Consensus       232 -~~~~sfS~~~~g~~eD~~~~~~~~~e~p~l~val~~~~vSiAffNfaG-lsitk~~SattRmllD~lRt~~IWv~si~m  309 (372)
T KOG3912|consen  232 -PSGDSFSCNPRGVLEDWGDAFAALQESPSLAVALIGFTVSIAFFNFAG-LSITKELSATTRMLLDSLRTYVIWVFSIAM  309 (372)
T ss_pred             -ecCCcCcCCCCcchhhHHHHHHHhcCCchhHHHHhhhhhheeeeeehh-hHHHHHhhHHHHHHHHhhhhhhhhHhHHHH
Confidence             0000010      00000    000122222222222121 2222222 246899999999999999999999999999


Q ss_pred             ecCcccccchhhhhHHHHHHHHHhhh
Q psy348          245 FQNEFTLYHWTGTALVFVGTVIFTQL  270 (293)
Q Consensus       245 fge~lt~~~~iG~~lv~~Gv~~Y~~~  270 (293)
                      +.|.+...|+.|.++.+.|+.+|+.+
T Consensus       310 ~~E~f~llqilGFliLi~Gi~lY~~i  335 (372)
T KOG3912|consen  310 GWEYFHLLQILGFLILIMGIILYNQI  335 (372)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999965

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=99.68  E-value=3.5e-17  Score=137.72  Aligned_cols=231  Identities=16%  Similarity=0.198  Sum_probs=178.8

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccc
Q psy348           16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEI   95 (293)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~   95 (293)
                      .+++++++++...+.+.+.-+|+| .++|.|+++|.++.+.++.....++|.|.+.....+.+++++.-.+..++|.+..
T Consensus        68 aK~WfpiSfLLv~MIyt~SKsLqy-L~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~  146 (309)
T COG5070          68 AKKWFPISFLLVVMIYTSSKSLQY-LAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQAS  146 (309)
T ss_pred             hhhhcCHHHHHHHHHHhcccceee-eeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHH
Confidence            788999999999999999999999 9999999999999999999999999999999999999999999999999987642


Q ss_pred             cccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHH
Q psy348           96 KKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLI  175 (293)
Q Consensus        96 ~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~  175 (293)
                      ...       .+      ....|++++...++..+.+-...++-.+-.+-...+.++|.|+.++|+.+.++ .+.|++..
T Consensus       147 ~~~-------~~------~lN~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s-~~~edws~  212 (309)
T COG5070         147 AFK-------AQ------ILNPGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFS-FLFEDWSP  212 (309)
T ss_pred             HHH-------hc------ccCCceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHH-HHhccCCc
Confidence            210       00      12579999999999999877766654443333346889999999999877654 33343311


Q ss_pred             HhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchh
Q psy348          176 AVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWT  255 (293)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~i  255 (293)
                      -.-...+          .+-.+..++.++++++.--++.-++++.+|+++.+++|.+.+....+.|.++||||.+...+.
T Consensus       213 ~n~annl----------~~d~l~am~ISgl~svgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~  282 (309)
T COG5070         213 GNLANNL----------SVDSLMAMFISGLCSVGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIF  282 (309)
T ss_pred             chhhcCC----------ChHHHHHHHHHHHHHhhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHH
Confidence            1000101          112233444555544322223345799999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHhhhc
Q psy348          256 GTALVFVGTVIFTQLV  271 (293)
Q Consensus       256 G~~lv~~Gv~~Y~~~~  271 (293)
                      .+.+-+....+|+...
T Consensus       283 sillGflsg~iYavak  298 (309)
T COG5070         283 SILLGFLSGAIYAVAK  298 (309)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999988888999763

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=99.66  E-value=8.6e-16  Score=125.57  Aligned_cols=147  Identities=21%  Similarity=0.311  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHH-----cCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCccccccc
Q psy348          118 GITLLTVALFISARMGIYQEVLYKT-----HGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFIS  192 (293)
Q Consensus       118 G~~l~l~s~l~~a~~~v~~~~l~~~-----~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (293)
                      |+++.+.|+++.|+++++.|+++++     .+.++.++++|.+..+.+..++.. .+.|............-+    ...
T Consensus         1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~-~~~e~~~~~~~~~~~~~~----~~~   75 (153)
T PF03151_consen    1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLA-FLLEGPQLSSFFSEIFGE----ELS   75 (153)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHH-HHHhhhhhhhHHHHhhhh----hhc
Confidence            7889999999999999999999998     456788999999988865543321 112221111000000000    001


Q ss_pred             -chHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHHhh
Q psy348          193 -IPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFTQ  269 (293)
Q Consensus       193 -~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y~~  269 (293)
                       .+..+..++.+++.+++.+...+.+++++||+++++.+++|.++++++|+++|||++|..+++|+++.+.|+.+|++
T Consensus        76 ~~~~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ysy  153 (153)
T PF03151_consen   76 SDPNFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYSY  153 (153)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheeeC
Confidence             34556667777888888888999999999999999999999999999999999999999999999999999999874

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>KOG2765|consensus

Probab=99.65  E-value=1.5e-15  Score=136.76  Aligned_cols=231  Identities=18%  Similarity=0.219  Sum_probs=170.4

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccc
Q psy348           16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEI   95 (293)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~   95 (293)
                      .+.-+..+.+++..+...|.||.| ++++..+++-+++-.||.+++.++..||+++.+.+++++.+.|++++..+|....
T Consensus       159 ak~sl~fc~lWF~anl~~naALa~-TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~  237 (416)
T KOG2765|consen  159 AKLSLFFCPLWFLANLTSNAALAF-TSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQN  237 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh-hhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEecccccc
Confidence            344455666799999999999999 9999999999999999999999999999999999999999999999998876432


Q ss_pred             cccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHH
Q psy348           96 KKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLI  175 (293)
Q Consensus        96 ~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~  175 (293)
                      ++     .+ ++.      ...|+++.+++++.+|.|.++.|+-..+.+. ...+..+-..+|+.-++++...+. .++.
T Consensus       238 ~~-----~~-a~~------~llG~llaL~sA~~YavY~vllk~~~~~eg~-rvdi~lffGfvGLfnllllwP~l~-iL~~  303 (416)
T KOG2765|consen  238 SD-----LP-ASR------PLLGNLLALLSALLYAVYTVLLKRKIGDEGE-RVDIQLFFGFVGLFNLLLLWPPLI-ILDF  303 (416)
T ss_pred             cc-----CC-ccc------hhHHHHHHHHHHHHHHHHHHHHHhhcccccc-cccHHHHHHHHHHHHHHHHhHHHH-HHHH
Confidence            11     01 111      2899999999999999999999877666641 223333333344332222221111 1111


Q ss_pred             HhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchh
Q psy348          176 AVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWT  255 (293)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~i  255 (293)
                      . ..|.+++|.      .......++.++++.++.=+.|-.+.--++|++.++..++.-.++++.-.++=|.++++.+++
T Consensus       304 ~-~~e~F~lP~------~~q~~~vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~ii  376 (416)
T KOG2765|consen  304 F-GEERFELPS------STQFSLVVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYII  376 (416)
T ss_pred             h-ccCcccCCC------CceeEeeeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHH
Confidence            1 224344331      112222344555666666678888899999999999999999999999999999999999999


Q ss_pred             hhhHHHHHHHHHh
Q psy348          256 GTALVFVGTVIFT  268 (293)
Q Consensus       256 G~~lv~~Gv~~Y~  268 (293)
                      |...|++|.++-+
T Consensus       377 Gsi~Ifv~Fv~vn  389 (416)
T KOG2765|consen  377 GSIPIFVGFVIVN  389 (416)
T ss_pred             HHHHHHHHHhhee
Confidence            9999999987744

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=99.65  E-value=3.1e-14  Score=127.29  Aligned_cols=212  Identities=14%  Similarity=0.169  Sum_probs=154.6

Q ss_pred             HHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHH-HHhccccChhhhhHHhhhhhhhhheeeccCcccc
Q psy348           18 HQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGI-IILKKVYTLDKYVSVIMITLGIIICTIMSSQEIK   96 (293)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~-l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~~   96 (293)
                      ..+.-.+.......+.+.+++| ++++..+++.++.|+++.++++ +++|||++++++.++++..+|+.++...+.... 
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~-  149 (292)
T COG0697          72 LLLLALLGLALPFLLLFLALKY-TSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGG-  149 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcch-
Confidence            3444445577778999999998 9999999999999999999997 777999999999999999999999987764320 


Q ss_pred             ccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhh-hhhhhhHHHHHHhhhHHHHHHHH
Q psy348           97 KYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALY-YTHLLPLPAFAFLYKNLYEHWLI  175 (293)
Q Consensus        97 ~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~-y~~~~~~~~~l~~~~~~~~~~~~  175 (293)
                               +. +      ..|+.+.+++.++++++.+..++.. +.+  +..... +... ....+.. . ....    
T Consensus       150 ---------~~-~------~~g~~~~l~a~~~~a~~~~~~~~~~-~~~--~~~~~~~~~~~-~~~~~~~-~-~~~~----  203 (292)
T COG0697         150 ---------IL-S------LLGLLLALAAALLWALYTALVKRLS-RLG--PVTLALLLQLL-LALLLLL-L-FFLS----  203 (292)
T ss_pred             ---------hH-H------HHHHHHHHHHHHHHHHHHHHHHHhc-CCC--hHHHHHHHHHH-HHHHHHH-H-HHhc----
Confidence                     10 1      6899999999999999999998877 332  223333 2211 1111110 0 0000    


Q ss_pred             HhcCCCCCCCcccccccchHHHHH-HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccch
Q psy348          176 AVNSTPLPLPSYLSFISIPSIVFY-LLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHW  254 (293)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~  254 (293)
                        ..+ .  +      .....+.. .....+...++...++..+++.++...++...++|+.+.+++++++||+++..++
T Consensus       204 --~~~-~--~------~~~~~~~~~~~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~  272 (292)
T COG0697         204 --GFG-A--P------ILSRAWLLLLYLGVFSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQL  272 (292)
T ss_pred             --ccc-c--c------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHH
Confidence              000 0  0      01112222 2222233325667788899999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHHHh
Q psy348          255 TGTALVFVGTVIFT  268 (293)
Q Consensus       255 iG~~lv~~Gv~~Y~  268 (293)
                      +|.++++.|+.+..
T Consensus       273 ~G~~li~~g~~l~~  286 (292)
T COG0697         273 LGAALVVLGVLLAS  286 (292)
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999997754

>TIGR00803 nst UDP-galactose transporter

Probab=99.59  E-value=3.5e-15  Score=129.88  Aligned_cols=208  Identities=20%  Similarity=0.292  Sum_probs=145.1

Q ss_pred             chhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCcccc-----------c--cCCCcccccc
Q psy348           41 IAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEIK-----------K--YGVSDEEQLS  107 (293)
Q Consensus        41 vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~~-----------~--~~~~~~~~~~  107 (293)
                      +++|.+..+++..|+++++.++.+.+||++..|+++.++++.|+......|.+...           +  ...+.....+
T Consensus         2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g   81 (222)
T TIGR00803         2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG   81 (222)
T ss_pred             ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence            68999999999999999999999999999999999999999999876655442210           0  0000000001


Q ss_pred             ccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCcc
Q psy348          108 YSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSY  187 (293)
Q Consensus       108 ~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  187 (293)
                      .      ...|..+.+.++.++++.++++|+..|++     +.++|.+..+++.+........+.....+.....  +.+
T Consensus        82 ~------~~~g~~~~l~a~~~~~~~~~y~e~~~k~~-----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~  148 (222)
T TIGR00803        82 N------PVVGLSAVLSALLSSGFAGVYFEKILKDG-----DTMFWSRNLQLPLFGLFSTFSVLLWSDGTLISNF--GFF  148 (222)
T ss_pred             c------HHHHHHHHHHHHHHHhhhHHHHHHcccCC-----CCchHHHHHHHHHHHHHHHHHHHhhcccchhhcc--Ccc
Confidence            1      26788889999999999999999986654     3458887777766544321111111000000000  000


Q ss_pred             cccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHH
Q psy348          188 LSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIF  267 (293)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y  267 (293)
                        ....+..|..++.+++.+    .++.+.+++.|+.+.+++++++++++.++|+++|||+++..+++|..+++.|+.+|
T Consensus       149 --~~~~~~~~~~~~~~a~~~----~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~lY  222 (222)
T TIGR00803       149 --IGYPTAVWIVGLLNVGGG----LCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFLY  222 (222)
T ss_pred             --cCCchHHHHHHHHHHhcC----ceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEeC
Confidence              001223444455544444    24556899999999999999999999999999999999999999999999998765

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>TIGR00688 rarD rarD protein

Probab=99.50  E-value=5.9e-13  Score=118.18  Aligned_cols=184  Identities=13%  Similarity=0.029  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccccc
Q psy348           18 HQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEIKK   97 (293)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~~~   97 (293)
                      .+...+++...+..+.+++++| ++++..+++.++.|+++++++++++|||+++++++++++.++|+++...++ .    
T Consensus        72 ~~~~~g~~~~~~~~~~~~a~~~-~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~-~----  145 (256)
T TIGR00688        72 SLLLCGLLIGFNWWLFIWAVNN-GSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLK-G----  145 (256)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc-chHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHc-C----
Confidence            3455666677889999999999 999999999999999999999999999999999999999999998865321 1    


Q ss_pred             cCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHh
Q psy348           98 YGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAV  177 (293)
Q Consensus        98 ~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~  177 (293)
                              + .       .   .+.+++++++|.|.+..|+..++ +  ..+...+ .....|......  +...     
T Consensus       146 --------~-~-------~---~~~l~aa~~~a~~~i~~~~~~~~-~--~~~~~~~-~~~~~~~~~~~~--~~~~-----  195 (256)
T TIGR00688       146 --------S-L-------P---WEALVLAFSFTAYGLIRKALKNT-D--LAGFCLE-TLSLMPVAIYYL--LQTD-----  195 (256)
T ss_pred             --------C-c-------h---HHHHHHHHHHHHHHHHHhhcCCC-C--cchHHHH-HHHHHHHHHHHH--HHhc-----
Confidence                    0 0       1   24677899999999999876432 1  2222221 222222221100  0000     


Q ss_pred             cCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhee
Q psy348          178 NSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVY  244 (293)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~  244 (293)
                      ..+...       ......|..++..++.+.++..++...+++.+|.+.++..+++|+++.+++++.
T Consensus       196 ~~~~~~-------~~~~~~~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~  255 (256)
T TIGR00688       196 FATVQQ-------TNPFPIWLLLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL  255 (256)
T ss_pred             cCcccc-------cCchhHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence            000000       011113444333333344677788889999999999999999999999998653

This uncharacterized protein is predicted to have many membrane-spanning domains.

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=99.47  E-value=4.7e-12  Score=114.61  Aligned_cols=211  Identities=12%  Similarity=0.147  Sum_probs=150.9

Q ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhHHHHHhh-chhHHHHHHHHHHhccccChhh----hhHHhhhhhhhhheeeccCc
Q psy348           19 QIELVVMFFITNVCNNYAFDFNIAMPLHMIFRA-GSLITNMIMGIIILKKVYTLDK----YVSVIMITLGIIICTIMSSQ   93 (293)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~-~~pi~t~l~~~l~l~~~~~~~~----~~~i~l~~~Gv~i~~~~~~~   93 (293)
                      -+.-++++..++.+.+.+.++ +.++....+-+ +.++++.+.+.+++||+.++++    +++++++++|+.++...+.+
T Consensus        62 g~l~G~~w~ig~~~~~~ai~~-~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~  140 (290)
T TIGR00776        62 GLLSGAFWALGQINQFKSMRY-MGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDK  140 (290)
T ss_pred             HHHHHHHHHhhhhhHHHHHHH-HhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEecccc
Confidence            344455588889999999998 99999977777 7888999999999999999999    99999999999998766432


Q ss_pred             cccccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhh---hhhhHHHHHHhhhHHH
Q psy348           94 EIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYT---HLLPLPAFAFLYKNLY  170 (293)
Q Consensus        94 ~~~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~---~~~~~~~~l~~~~~~~  170 (293)
                      ..+      ++ +..+     ...|+++.++|.++++.|.+..|..  ++  +|.+..+..   ...+...+....    
T Consensus       141 ~~~------~~-~~~~-----~~~Gi~~~l~sg~~y~~~~~~~~~~--~~--~~~~~~~~~~~g~~~~~~~~~~~~----  200 (290)
T TIGR00776       141 SAG------IK-SEFN-----FKKGILLLLMSTIGYLVYVVVAKAF--GV--DGLSVLLPQAIGMVIGGIIFNLGH----  200 (290)
T ss_pred             ccc------cc-cccc-----hhhHHHHHHHHHHHHHHHHHHHHHc--CC--CcceehhHHHHHHHHHHHHHHHHH----
Confidence            110      00 0011     1469999999999999999999865  23  344442222   111211111110    


Q ss_pred             HHHHHHhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHh-hcchhHHHHHHHHHHHHHHhhhheeecCcc
Q psy348          171 EHWLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTT-ECNSLTVTLVITLRKFVSLLFSIVYFQNEF  249 (293)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~-~~sa~~~sv~~~l~~v~t~ils~~~fge~l  249 (293)
                         .  ...+ +         .....+..++...+ ..+++..++...+ +.++.+.++...++|+.+.+.+++++||+.
T Consensus       201 ---~--~~~~-~---------~~~~~~~~~~~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~  264 (290)
T TIGR00776       201 ---I--LAKP-L---------KKYAILLNILPGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKK  264 (290)
T ss_pred             ---h--cccc-h---------HHHHHHHHHHHHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCC
Confidence               0  0111 1         11223333333333 3466666666778 999999999999999999999999999999


Q ss_pred             cccch----hhhhHHHHHHHH
Q psy348          250 TLYHW----TGTALVFVGTVI  266 (293)
Q Consensus       250 t~~~~----iG~~lv~~Gv~~  266 (293)
                      +..++    +|.++++.|+.+
T Consensus       265 ~~~~~~~~~iG~~lIi~~~~l  285 (290)
T TIGR00776       265 TKREMIAISVGIILIIIAANI  285 (290)
T ss_pred             CcceeehhHHHHHHHHHHHHH
Confidence            99999    999999999976

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>KOG2766|consensus

Probab=99.39  E-value=2.5e-14  Score=122.83  Aligned_cols=221  Identities=18%  Similarity=0.208  Sum_probs=163.9

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccc
Q psy348           16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEI   95 (293)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~   95 (293)
                      |++|+++++...-+|.+-..|.+| ++....+++.+-..+.+++++|+|+|.|+++.++.|+++++.|++++...|...+
T Consensus        78 ~~hYilla~~DVEaNy~vV~AyQy-TsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~ag  156 (336)
T KOG2766|consen   78 WRHYILLAFVDVEANYFVVKAYQY-TSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAG  156 (336)
T ss_pred             HHHhhheeEEeecccEEEeeehhh-cchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccc
Confidence            889999999998889899999999 8999999999999999999999999999999999999999999999998886543


Q ss_pred             cccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHH
Q psy348           96 KKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLI  175 (293)
Q Consensus        96 ~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~  175 (293)
                      +..+      .+.+      ..|+.+++..+-++|..++.+|.+.|+.+  ..|.+....+++..+         +.++.
T Consensus       157 d~ag------gsnp------~~GD~lvi~GATlYaVSNv~EEflvkn~d--~~elm~~lgLfGaII---------saIQ~  213 (336)
T KOG2766|consen  157 DRAG------GSNP------VKGDFLVIAGATLYAVSNVSEEFLVKNAD--RVELMGFLGLFGAII---------SAIQF  213 (336)
T ss_pred             cccC------CCCC------ccCcEEEEecceeeeeccccHHHHHhcCc--HHHHHHHHHHHHHHH---------HHHHH
Confidence            2211      1112      78999999999999999999999988654  457776666655432         22222


Q ss_pred             HhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchh
Q psy348          176 AVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWT  255 (293)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~i  255 (293)
                      +.+..  +...+  .|. ..+..++. ..++-++.....=..++..|++..++.......-++++  -.||-++++...+
T Consensus       214 i~~~~--~~~tl--~w~-~~i~~yl~-f~L~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~l  285 (336)
T KOG2766|consen  214 IFERH--HVSTL--HWD-SAIFLYLR-FALTMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFL  285 (336)
T ss_pred             hhhcc--ceeeE--eeh-HHHHHHHH-HHHHHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHH
Confidence            22211  11111  011 12222222 23333222222223578999999999998888888877  7888889999999


Q ss_pred             hhhHHHHHHHHHh
Q psy348          256 GTALVFVGTVIFT  268 (293)
Q Consensus       256 G~~lv~~Gv~~Y~  268 (293)
                      ..+.+..|..+|+
T Consensus       286 aF~~i~~GliiYs  298 (336)
T KOG2766|consen  286 AFATIATGLIIYS  298 (336)
T ss_pred             HHHHHHHhhEEee
Confidence            9999999999984

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=99.39  E-value=2.2e-11  Score=107.13  Aligned_cols=207  Identities=14%  Similarity=0.131  Sum_probs=134.8

Q ss_pred             HHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccccccC
Q psy348           20 IELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEIKKYG   99 (293)
Q Consensus        20 ~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~~~~~   99 (293)
                      ...+.+...+-....++.+- =.+=..++-....|++.++++.+++|||+++.|+++++++.+||..-.+...+      
T Consensus        76 ~l~a~li~~nW~lfiWAvn~-g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~------  148 (293)
T COG2962          76 ALTALLIGLNWWLFIWAVNN-GHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGS------  148 (293)
T ss_pred             HHHHHHHHHHHHHhheecCC-CchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCC------
Confidence            33333333333334444442 23344566667899999999999999999999999999999999998776432      


Q ss_pred             CCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcC
Q psy348          100 VSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNS  179 (293)
Q Consensus       100 ~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~  179 (293)
                              ++      .....++    +.+++|....|++    +.++.+-++.-.+.-.|..+...-.+ +      .+
T Consensus       149 --------lp------wval~la----~sf~~Ygl~RK~~----~v~a~~g~~lE~l~l~p~al~yl~~l-~------~~  199 (293)
T COG2962         149 --------LP------WVALALA----LSFGLYGLLRKKL----KVDALTGLTLETLLLLPVALIYLLFL-A------DS  199 (293)
T ss_pred             --------Cc------HHHHHHH----HHHHHHHHHHHhc----CCchHHhHHHHHHHHhHHHHHHHHHH-h------cC
Confidence                    23      2333333    5778888666543    44444444444443344332211010 0      11


Q ss_pred             CCCCCCcccccccchHHHHHHHHHH-HHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhh
Q psy348          180 TPLPLPSYLSFISIPSIVFYLLGNV-LTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTA  258 (293)
Q Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~  258 (293)
                      +.+    .  ..+.+..+..+.+.+ +++ +.....-..-++.+=.+..+.+.++|....++++++|||+++.-+.+..+
T Consensus       200 ~~~----~--~~~~~~~~~LLv~aG~vTa-vpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~  272 (293)
T COG2962         200 GQF----L--QQNANSLWLLLVLAGLVTA-VPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFA  272 (293)
T ss_pred             chh----h--hcCCchHHHHHHHhhHHHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            100    0  001223444444333 333 33344445689999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhh
Q psy348          259 LVFVGTVIFTQ  269 (293)
Q Consensus       259 lv~~Gv~~Y~~  269 (293)
                      ++-.|+.+|+.
T Consensus       273 ~IW~aL~l~~~  283 (293)
T COG2962         273 FIWLALALFSI  283 (293)
T ss_pred             HHHHHHHHHHH
Confidence            99999999984

>KOG4510|consensus

Probab=99.35  E-value=6.7e-13  Score=114.89  Aligned_cols=219  Identities=14%  Similarity=0.158  Sum_probs=149.6

Q ss_pred             HHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccccccCCCc
Q psy348           23 VVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEIKKYGVSD  102 (293)
Q Consensus        23 ~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~~~~~~~~  102 (293)
                      +++-+.+..+.+++++| .|.+-+.++..++|++|.+++|.++||+++....++.++.+.|+++....+.-.++....++
T Consensus       104 g~mG~tgvmlmyya~~~-mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~  182 (346)
T KOG4510|consen  104 GFMGFTGVMLMYYALMY-MSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGED  182 (346)
T ss_pred             hhhhhhHHHHHHHHHhh-cchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccc
Confidence            44455567889999999 99999999999999999999999999999999999999999999998765432221110000


Q ss_pred             cccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCC
Q psy348          103 EEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPL  182 (293)
Q Consensus       103 ~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  182 (293)
                      ..+-+.      ...|....+.+++..|-.-++.+.+-|+.  +..-.+.|-.++++..-++....    +      +.+
T Consensus       183 ~s~~~~------~~~gt~aai~s~lf~asvyIilR~iGk~~--h~~msvsyf~~i~lV~s~I~~~~----i------g~~  244 (346)
T KOG4510|consen  183 SSQVEY------DIPGTVAAISSVLFGASVYIILRYIGKNA--HAIMSVSYFSLITLVVSLIGCAS----I------GAV  244 (346)
T ss_pred             cccccc------cCCchHHHHHhHhhhhhHHHHHHHhhccc--cEEEEehHHHHHHHHHHHHHHhh----c------cce
Confidence            000011      15677778888877777666666654433  23344555555543322111101    0      112


Q ss_pred             CCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHH
Q psy348          183 PLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFV  262 (293)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~  262 (293)
                      ++|.      -...|.++...++++++++...=..+++=-|...++..+..-+++.+.-+++|||-.|.+.|.|+++++.
T Consensus       245 ~lP~------cgkdr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvs  318 (346)
T KOG4510|consen  245 QLPH------CGKDRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVS  318 (346)
T ss_pred             ecCc------cccceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeeh
Confidence            2221      0111222222245566777766667888778888899999999999999999999999999999999999


Q ss_pred             HHHH
Q psy348          263 GTVI  266 (293)
Q Consensus       263 Gv~~  266 (293)
                      ..++
T Consensus       319 S~v~  322 (346)
T KOG4510|consen  319 STVW  322 (346)
T ss_pred             hHHH
Confidence            9877

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=99.27  E-value=3.2e-10  Score=97.73  Aligned_cols=208  Identities=14%  Similarity=0.087  Sum_probs=148.5

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccc
Q psy348           16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEI   95 (293)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~   95 (293)
                      ++.....+.....+|.+.+.+++. +|.+....+-.+.|+.+.+++    .||..-.  +-+.+.+.|+.+..-...+. 
T Consensus        71 ~~~~~~yGvsLg~MNl~FY~si~r-iPlGiAVAiEF~GPL~vA~~~----sRr~~d~--vwvaLAvlGi~lL~p~~~~~-  142 (292)
T COG5006          71 RLALLAYGVSLGGMNLLFYLSIER-IPLGIAVAIEFTGPLAVALLS----SRRLRDF--VWVALAVLGIWLLLPLGQSV-  142 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHh-ccchhhhhhhhccHHHHHHHh----ccchhhH--HHHHHHHHHHHhheeccCCc-
Confidence            778888899999999999999997 999999999999999876654    4544444  44556677877766443221 


Q ss_pred             cccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHH
Q psy348           96 KKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLI  175 (293)
Q Consensus        96 ~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~  175 (293)
                                .+.+      ..|..+.+.+..||+.|-+..++.-+..  +...-+.+...++..+++++ |.       
T Consensus       143 ----------~~lD------p~Gv~~Al~AG~~Wa~YIv~G~r~g~~~--~g~~g~a~gm~vAaviv~Pi-g~-------  196 (292)
T COG5006         143 ----------WSLD------PVGVALALGAGACWALYIVLGQRAGRAE--HGTAGVAVGMLVAALIVLPI-GA-------  196 (292)
T ss_pred             ----------CcCC------HHHHHHHHHHhHHHHHHHHHcchhcccC--CCchHHHHHHHHHHHHHhhh-hh-------
Confidence                      1122      7899999999999999999998775311  11122333333333333332 11       


Q ss_pred             HhcCCCCCCCcccccccchHHHHH-HHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccch
Q psy348          176 AVNSTPLPLPSYLSFISIPSIVFY-LLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHW  254 (293)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~  254 (293)
                      ...++.         ...|.+... +....+++.+.+......++|.++-+.++..+++|.+..+.|++++||.+|+.||
T Consensus       197 ~~ag~~---------l~~p~ll~laLgvavlSSalPYsLEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qw  267 (292)
T COG5006         197 AQAGPA---------LFSPSLLPLALGVAVLSSALPYSLEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQW  267 (292)
T ss_pred             hhcchh---------hcChHHHHHHHHHHHHhcccchHHHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHH
Confidence            011121         124454443 3344455667767777789999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHHHH
Q psy348          255 TGTALVFVGTVI  266 (293)
Q Consensus       255 iG~~lv~~Gv~~  266 (293)
                      +|++.|+.+..-
T Consensus       268 laI~~ViaAsaG  279 (292)
T COG5006         268 LAIAAVIAASAG  279 (292)
T ss_pred             HHHHHHHHHHhc
Confidence            999999998754

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=98.81  E-value=9e-08  Score=86.95  Aligned_cols=227  Identities=18%  Similarity=0.217  Sum_probs=124.7

Q ss_pred             HHHHHHH-HHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCcccc
Q psy348           18 HQIELVV-MFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEIK   96 (293)
Q Consensus        18 ~~~~~~~-~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~~   96 (293)
                      +.+..++ ++..+.++++.++.+ .|.+..+-+.+...++..+++..++|||++++.+.|++++++|.+++......+..
T Consensus        51 ~~W~~G~~~~~~g~~~~~~Al~~-ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~  129 (300)
T PF05653_consen   51 PLWWIGLLLMVLGEILNFVALGF-APASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEP  129 (300)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHh-hhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCC
Confidence            3344444 367788999999999 89999999999999999999999999999999999999999999987765533211


Q ss_pred             ccCCCcccc--ccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHH-HHHhh-hHHHHH
Q psy348           97 KYGVSDEEQ--LSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPA-FAFLY-KNLYEH  172 (293)
Q Consensus        97 ~~~~~~~~~--~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~-~l~~~-~~~~~~  172 (293)
                      ..   ..+|  +...++   ....+.......+     .+..-...++++..  .++.|...+++.. +.... -.+-..
T Consensus       130 ~~---t~~~l~~~~~~~---~fl~y~~~~~~~~-----~~L~~~~~~r~g~~--~i~vyi~i~sl~Gs~tvl~~K~i~~~  196 (300)
T PF05653_consen  130 IH---TLDELIALLSQP---GFLVYFILVLVLI-----LILIFFIKPRYGRR--NILVYISICSLIGSFTVLSAKAISIL  196 (300)
T ss_pred             cC---CHHHHHHHhcCc---ceehhHHHHHHHH-----HHHHHhhcchhccc--ceEEEEEEeccccchhhhHHHHHHHH
Confidence            00   0000  000000   0111222211111     11222222333321  2344554444211 11111 111111


Q ss_pred             HHHHhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH-HHHHHHHHHHHhhhheeecC--cc
Q psy348          173 WLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVT-LVITLRKFVSLLFSIVYFQN--EF  249 (293)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~s-v~~~l~~v~t~ils~~~fge--~l  249 (293)
                      +.....+++        .+..|..|..++....+...-..+...++++.++.... +.-..-...+++-|.++|+|  +.
T Consensus       197 i~~~~~g~~--------~f~~~~~y~l~~~~v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~  268 (300)
T PF05653_consen  197 IKLTFSGDN--------QFTYPLTYLLLLVLVVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRM  268 (300)
T ss_pred             HHHHhcCch--------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccc
Confidence            111111111        02234445444433333333334445578888776533 23333446788889999998  66


Q ss_pred             cccc----hhhhhHHHHHHHH
Q psy348          250 TLYH----WTGTALVFVGTVI  266 (293)
Q Consensus       250 t~~~----~iG~~lv~~Gv~~  266 (293)
                      ++.+    ..|..+++.|+++
T Consensus       269 ~~~~~~~~~~G~~~ii~GV~l  289 (300)
T PF05653_consen  269 TAWQIIGFLCGFLIIIIGVFL  289 (300)
T ss_pred             cHHHHHHHHHHHHHHHHhhhe
Confidence            6644    4567778888855

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=98.72  E-value=1.4e-08  Score=78.91  Aligned_cols=76  Identities=14%  Similarity=0.232  Sum_probs=65.6

Q ss_pred             hHHHHHHHHHHH-HHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCc
Q psy348           16 NQHQIELVVMFF-ITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQ   93 (293)
Q Consensus        16 ~~~~~~~~~~~~-~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~   93 (293)
                      +......+.+.. .+..+.+++++| .+ +....+.++.|+++++++++++|||++++++.+++++++|+++...+|.+
T Consensus        34 ~~~~~~~g~~~~~~~~~~~~~a~~~-~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~  110 (113)
T PF13536_consen   34 WLWLILAGLLGFGVAYLLFFYALSY-AP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT  110 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh-Cc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence            444445455544 788999999999 88 57789999999999999999999999999999999999999999988754

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.62  E-value=9.1e-08  Score=74.51  Aligned_cols=124  Identities=15%  Similarity=0.231  Sum_probs=85.7

Q ss_pred             HHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCcccccccchHHHHHHHHHHHH
Q psy348          127 FISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLT  206 (293)
Q Consensus       127 l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (293)
                      ++||.+.+..|+..++.  ++.+..++....+.+ .++.. ...+..+    ....         ........+....+.
T Consensus         1 ~~~a~~~~~~k~~~~~~--~~~~~~~~~~~~~~~-~~~~~-~~~~~~~----~~~~---------~~~~~~~~~~~~~~~   63 (126)
T PF00892_consen    1 FSWAIYSVFSKKLLKKI--SPLSITFWRFLIAGI-LLILL-LILGRKP----FKNL---------SPRQWLWLLFLGLLG   63 (126)
T ss_pred             ceeeeHHHHHHHHhccC--CHHHHHHHHHHHHHH-HHHHH-Hhhcccc----ccCC---------ChhhhhhhhHhhccc
Confidence            36788999999888874  466777777766654 22211 1111100    0111         111122223333333


Q ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHH
Q psy348          207 QYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIF  267 (293)
Q Consensus       207 ~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y  267 (293)
                      ..+++..++.++++.++...++...+.|+++.++++++++|+++..+++|.++++.|+++.
T Consensus        64 ~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   64 TALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI  124 (126)
T ss_pred             eehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            3466677788999999999999999999999999999999999999999999999999764

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=98.54  E-value=5.3e-06  Score=73.65  Aligned_cols=214  Identities=13%  Similarity=0.121  Sum_probs=144.2

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhcccchhhHHH-HHhhchhHHHHHHHHHHhccccChhhhh----HHhhhhhhhhheeecc
Q psy348           17 QHQIELVVMFFITNVCNNYAFDFNIAMPLHM-IFRAGSLITNMIMGIIILKKVYTLDKYV----SVIMITLGIIICTIMS   91 (293)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~-~~~~~~pi~t~l~~~l~l~~~~~~~~~~----~i~l~~~Gv~i~~~~~   91 (293)
                      .--+.-++++..+..+.+.++++ +.+|... +-.....+.+.++++++++|-.+..++.    +++++++|+.+.+..|
T Consensus        46 ~~~~lsG~~W~iGq~~qf~s~~~-~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~  124 (269)
T PF06800_consen   46 IVAFLSGAFWAIGQIGQFKSFKK-IGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQD  124 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-hcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHHhcccc
Confidence            34456666799999999999998 8877764 4456678889999999999988877765    8899999999999888


Q ss_pred             CccccccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHH
Q psy348           92 SQEIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYE  171 (293)
Q Consensus        92 ~~~~~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~  171 (293)
                      ..+...      + ++.     ...-|+...+++.+.+..|.+..+.    .+.+++...+ -..+++.+..    .++.
T Consensus       125 ~~~~~~------~-~~~-----~~~kgi~~Ll~stigy~~Y~~~~~~----~~~~~~~~~l-PqaiGm~i~a----~i~~  183 (269)
T PF06800_consen  125 KKSDKS------S-SKS-----NMKKGILALLISTIGYWIYSVIPKA----FHVSGWSAFL-PQAIGMLIGA----FIFN  183 (269)
T ss_pred             cccccc------c-ccc-----chhhHHHHHHHHHHHHHHHHHHHHh----cCCChhHhHH-HHHHHHHHHH----HHHh
Confidence            654210      0 000     1257999999999999999888643    2334444332 2223322111    1111


Q ss_pred             HHHHHhcCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccc
Q psy348          172 HWLIAVNSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTL  251 (293)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~  251 (293)
                      ...   ..+..          ....|.-++...+.+ +++...+.+.++.+..+.=..+-+..+++.+.|.++++|+=+.
T Consensus       184 ~~~---~~~~~----------~k~~~~nil~G~~w~-ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~  249 (269)
T PF06800_consen  184 LFS---KKPFF----------EKKSWKNILTGLIWG-IGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTK  249 (269)
T ss_pred             hcc---ccccc----------ccchHHhhHHHHHHH-HHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCch
Confidence            110   11111          112233344443434 6666777789999999988888899999999999999997665


Q ss_pred             c----chhhhhHHHHHHHH
Q psy348          252 Y----HWTGTALVFVGTVI  266 (293)
Q Consensus       252 ~----~~iG~~lv~~Gv~~  266 (293)
                      .    .++|.++++.|.++
T Consensus       250 ke~~~~~~G~~Liv~G~il  268 (269)
T PF06800_consen  250 KEMIYTLIGLILIVIGAIL  268 (269)
T ss_pred             hhHHHHHHHHHHHHHhhhc
Confidence            4    56788888888643

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>PRK15430 putative chloramphenical resistance permease RarD; Provisional

Probab=98.49  E-value=2.8e-06  Score=77.09  Aligned_cols=138  Identities=15%  Similarity=0.230  Sum_probs=96.6

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCcccccccchH
Q psy348          116 SLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPS  195 (293)
Q Consensus       116 ~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (293)
                      ..|+++.+++.++++...+..|.. .  +.+|.++.++..+++.+..+++.. .......... .          ...+.
T Consensus         7 ~~g~~~~l~a~~~wg~~~~~~k~~-~--~~~~~~~~~~R~~~a~~~l~~~~~-~~~~~~~~~~-~----------~~~~~   71 (296)
T PRK15430          7 RQGVLLALAAYFIWGIAPAYFKLI-Y--YVPADEILTHRVIWSFFFMVVLMS-ICRQWSYLKT-L----------IQTPQ   71 (296)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHh-c--CCCHHHHHHHHHHHHHHHHHHHHH-HHccHHHHHH-H----------HcCHH
Confidence            679999999999999999999653 3  345788899988877654332210 1010000000 0          00111


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHHh
Q psy348          196 IVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFT  268 (293)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y~  268 (293)
                      .+.......+....+....++.++++++..+++...+.|+++.++++++++|+++..+++|+++.+.|+.+..
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~  144 (296)
T PRK15430         72 KIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQL  144 (296)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            2222223233233455677889999999999999999999999999999999999999999999999998743

>KOG4314|consensus

Probab=98.47  E-value=3.6e-07  Score=76.38  Aligned_cols=207  Identities=14%  Similarity=0.124  Sum_probs=144.3

Q ss_pred             HHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccccccC
Q psy348           20 IELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEIKKYG   99 (293)
Q Consensus        20 ~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~~~~~   99 (293)
                      .+.++++.+.++....+|+- ++++-.+-+-+|.-.++.+++++.+|.|+.-.++++.++.+.|+++....|....    
T Consensus        57 aPF~i~Wt~aNY~Yl~AL~~-is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a----  131 (290)
T KOG4314|consen   57 APFSIFWTGANYLYLLALKK-ISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHA----  131 (290)
T ss_pred             cceEEEEecCCcHHHHHHHh-cChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhh----
Confidence            45666788889999999997 9999999999999999999999999999999999999999999999998775421    


Q ss_pred             CCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhH--------HHH-HHhhhHHH
Q psy348          100 VSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPL--------PAF-AFLYKNLY  170 (293)
Q Consensus       100 ~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~--------~~~-l~~~~~~~  170 (293)
                            +        ...|+.+.+.|+...|+|-|..|......+-.  +.-.+++..+.        |.. +.+.+  .
T Consensus       132 ------~--------e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~G--daa~FmS~LGF~NL~~~~~~~lIL~~T~--V  193 (290)
T KOG4314|consen  132 ------D--------EIIGIACAVGSAFMAALYKVLFKMFIGNANFG--DAAHFMSCLGFFNLCFISFPALILAFTG--V  193 (290)
T ss_pred             ------h--------hhhhHHHHHHHHHHHHHHHHHHHHHhccCcch--hHHHHHHHHHHHHHHHHhhhHHHHHHhc--h
Confidence                  1        27899999999999999999998776543321  22223333332        221 11111  2


Q ss_pred             HHHHHHhcCCCCCCCcccccccchHHHHHHH-HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcc
Q psy348          171 EHWLIAVNSTPLPLPSYLSFISIPSIVFYLL-GNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEF  249 (293)
Q Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~l  249 (293)
                      |++......|                |..+. ..+++- --+..+...+..+.|...|+-..+.-......-.++-+-..
T Consensus       194 E~~qsFA~~P----------------WG~l~G~A~L~l-AFN~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~  256 (290)
T KOG4314|consen  194 EHLQSFAAAP----------------WGCLCGAAGLSL-AFNFLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEF  256 (290)
T ss_pred             HHHHHHhhCC----------------chhhhhHHHHHH-HHhhheeehhhhhchhhheehheecCcchhHHHHHHHHHHH
Confidence            3443221111                11111 111111 11223334577788888888777766666666666666689


Q ss_pred             cccchhhhhHHHHHHHH
Q psy348          250 TLYHWTGTALVFVGTVI  266 (293)
Q Consensus       250 t~~~~iG~~lv~~Gv~~  266 (293)
                      +....+|.+++..|..+
T Consensus       257 ntl~La~T~iI~i~FiL  273 (290)
T KOG4314|consen  257 NTLFLAATCIICIGFIL  273 (290)
T ss_pred             HHHHHHHHHHHHHhHHh
Confidence            99999999999999765

>COG2510 Predicted membrane protein [Function unknown]

Probab=98.46  E-value=2.9e-07  Score=71.64  Aligned_cols=129  Identities=14%  Similarity=0.165  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHH---HHHhhhHHHHHHHHHhcCCCCCCCcccccccchH
Q psy348          119 ITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPA---FAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPS  195 (293)
Q Consensus       119 ~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (293)
                      .++.++|++++++..++.|.-.+..|+  ....+-.+...+..   .+...|.             ++.+    .-..+.
T Consensus         5 ~~~ALLsA~fa~L~~iF~KIGl~~vdp--~~At~IRtiVi~~~l~~v~~~~g~-------------~~~~----~~~~~k   65 (140)
T COG2510           5 IIYALLSALFAGLTPIFAKIGLEGVDP--DFATTIRTIVILIFLLIVLLVTGN-------------WQAG----GEIGPK   65 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccCc--cHHHHHHHHHHHHHHHHHHHhcCc-------------eecc----cccCcc
Confidence            467889999999999999877765543  33333333322211   1111111             1111    012455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHH
Q psy348          196 IVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVI  266 (293)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~  266 (293)
                      .|.++..+++.+-++..+.|+.++.-.+..........++++.++|++++||+++..+|+|..++.+|+.+
T Consensus        66 ~~lflilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gail  136 (140)
T COG2510          66 SWLFLILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAIL  136 (140)
T ss_pred             eehhhhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeee
Confidence            67777777776667777888999999999999999999999999999999999999999999999999865

>TIGR00688 rarD rarD protein

Probab=98.38  E-value=4.7e-06  Score=73.85  Aligned_cols=134  Identities=15%  Similarity=0.187  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHh---hhHHHHHHHHHhcCCCCCCCcccccccch
Q psy348          118 GITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFL---YKNLYEHWLIAVNSTPLPLPSYLSFISIP  194 (293)
Q Consensus       118 G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (293)
                      |.++.++++++++...+..|.+ .  +.+|.++.++-.+++.+.+++.   .+..........  . .         ...
T Consensus         3 g~~~~i~a~~~wg~~~~~~k~~-~--~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~--~-~---------~~~   67 (256)
T TIGR00688         3 GIIVSLLASFLFGYMYYYSKLL-K--PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLK--R-I---------QKR   67 (256)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHh-c--cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHh--C-c---------ccc
Confidence            8899999999999999999863 3  3567889999888776543321   111000000000  0 0         001


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHH
Q psy348          195 SIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVI  266 (293)
Q Consensus       195 ~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~  266 (293)
                      ..+......++...++....++.++++++..+++...+.|+++.++++++++|+++..+++|.++.+.|+.+
T Consensus        68 ~~~~~~~~~g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~l  139 (256)
T TIGR00688        68 PLILSLLLCGLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVIS  139 (256)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            112222222222335556777889999999999999999999999999999999999999999999999876

This uncharacterized protein is predicted to have many membrane-spanning domains.

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=98.36  E-value=1.2e-05  Score=63.91  Aligned_cols=117  Identities=10%  Similarity=0.084  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCcccccccchHH
Q psy348          117 LGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSI  196 (293)
Q Consensus       117 ~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (293)
                      .|+++++.++++.+...+..|+-.++.+..  +....    .......            .              .+|..
T Consensus         2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~--~~~~~----~~~~~~~------------~--------------~~p~~   49 (129)
T PRK02971          2 MGYLWGLASVLLASVAQLSLKWGMSRLPLL--SHAWD----FIAALLA------------F--------------GLALR   49 (129)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhCCCc--cchhH----HHHHHHH------------H--------------hccHH
Confidence            488999999999999888888777766531  11000    0000000            0              01211


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhe--eecCcccccchhhhhHHHHHHHHH
Q psy348          197 VFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIV--YFQNEFTLYHWTGTALVFVGTVIF  267 (293)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~--~fge~lt~~~~iG~~lv~~Gv~~Y  267 (293)
                      +  +....++..++...|.+++++.+...+.....+..+...+.++.  +|||++|+.+++|+++++.|+++-
T Consensus        50 ~--i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv  120 (129)
T PRK02971         50 A--VLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLI  120 (129)
T ss_pred             H--HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            1  11212222244457778999999999999988888888888885  899999999999999999999773

>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown

Probab=98.32  E-value=9e-07  Score=68.80  Aligned_cols=71  Identities=17%  Similarity=0.294  Sum_probs=64.3

Q ss_pred             hHHHHHHHHH-HHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhhe
Q psy348           16 NQHQIELVVM-FFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIIC   87 (293)
Q Consensus        16 ~~~~~~~~~~-~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~   87 (293)
                      +...+..+.+ ...+..+.+.++++ ++++..+++.++.|+++.+++++++||+++++++.++++++.|+.+.
T Consensus        53 ~~~~~~~~~~~~~~~~~~~~~a~~~-~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~  124 (126)
T PF00892_consen   53 WLWLLFLGLLGTALAYLLYFYALKY-ISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLI  124 (126)
T ss_pred             hhhhhHhhccceehHHHHHHHHHHh-cchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence            5555666666 58889999999998 99999999999999999999999999999999999999999999875

Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane

>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein

Probab=98.20  E-value=1.7e-05  Score=71.30  Aligned_cols=130  Identities=8%  Similarity=0.136  Sum_probs=86.3

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCcccccccchHHHH
Q psy348          119 ITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVF  198 (293)
Q Consensus       119 ~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (293)
                      .++.+++++++|...+..|+..++..    +...+....+....+++.  ...     .....+..       .....+.
T Consensus         3 ~~~~~~aa~~~a~~~~~~k~~~~~~~----~~~~~~~~~~~~~l~~~~--~~~-----~~~~~~~~-------~~~~~~~   64 (281)
T TIGR03340         3 LTLVVFSALMHAGWNLMAKSHADKEP----DFLWWALLAHSVLLTPYG--LWY-----LAQVGWSR-------LPATFWL   64 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCCchh----HHHHHHHHHHHHHHHHHH--HHh-----cccCCCCC-------cchhhHH
Confidence            46788899999999999986654421    233444433332222211  000     00111110       0112333


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHH
Q psy348          199 YLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVI  266 (293)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~  266 (293)
                      .++..++....+..+.+...++.++...++.....|+++.++++++++|+++..+++|+++++.|+.+
T Consensus        65 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~l  132 (281)
T TIGR03340        65 LLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLV  132 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            44444444445556677789999999999999999999999999999999999999999999999976

This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=98.14  E-value=9.5e-06  Score=62.86  Aligned_cols=64  Identities=9%  Similarity=0.094  Sum_probs=59.3

Q ss_pred             HHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhhee
Q psy348           24 VMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICT   88 (293)
Q Consensus        24 ~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~   88 (293)
                      .+|..+..+...+++. +|.+....+-++.++.+++++++++|||++.+|++|+.++++|+++..
T Consensus        45 ~~~~l~~~~~~~al~~-iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~  108 (111)
T PRK15051         45 ACLGLAMVLWLLVLQN-VPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILG  108 (111)
T ss_pred             HHHHHHHHHHHHHHhh-CChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            4578889999999997 999999888889999999999999999999999999999999998765

>PLN00411 nodulin MtN21 family protein; Provisional

Probab=98.05  E-value=9.7e-05  Score=68.89  Aligned_cols=135  Identities=15%  Similarity=0.141  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCcccccccchHH
Q psy348          117 LGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSI  196 (293)
Q Consensus       117 ~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (293)
                      .-++.+++..++++.+.+..|..+ +.+.++....+|-..++...++++. ...+.    ....    |     ......
T Consensus        13 ~~~~~~~~~q~~~~~~~~~~k~a~-~~G~~~~~~~~~R~~iA~l~Ll~~~-~~~~~----~~~~----~-----~~~~~~   77 (358)
T PLN00411         13 VFLTAMLATETSVVGISTLFKVAT-SKGLNIYPFLGYSYLLASLLLLPSL-FFTNR----SRSL----P-----PLSVSI   77 (358)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHH-HCCCCccHHHHHHHHHHHHHHHHHH-HHHHH----hccc----C-----cchHHH
Confidence            345666667888888888887777 5577788888888777644333221 00010    0000    0     001123


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhee------ecCcccccchhhhhHHHHHHHH
Q psy348          197 VFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVY------FQNEFTLYHWTGTALVFVGTVI  266 (293)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~------fge~lt~~~~iG~~lv~~Gv~~  266 (293)
                      +..+.+.++.+.+.+...+..+++++|..+++..++.|+++.++++++      ++|+++..+++|+++.+.|+.+
T Consensus        78 ~~~l~l~g~~g~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~l  153 (358)
T PLN00411         78 LSKIGLLGFLGSMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALV  153 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHH
Confidence            333333333333444566778999999999999999999999999999      7999999999999999999976

>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional

Probab=97.77  E-value=0.00013  Score=56.51  Aligned_cols=56  Identities=16%  Similarity=0.243  Sum_probs=51.0

Q ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHH
Q psy348          212 SSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIF  267 (293)
Q Consensus       212 ~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y  267 (293)
                      ..+...+++.+...+-....+.++.+.++|+++|||++++.+++|+++++.|+..-
T Consensus        52 ~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i  107 (111)
T PRK15051         52 VLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVIL  107 (111)
T ss_pred             HHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence            45556899999999988888999999999999999999999999999999999763

>PF13536 EmrE: Multidrug resistance efflux transporter

Probab=97.71  E-value=0.00053  Score=53.02  Aligned_cols=59  Identities=15%  Similarity=0.453  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHHh
Q psy348          209 LCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFT  268 (293)
Q Consensus       209 l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y~  268 (293)
                      ..+..+++..++.++ ..++...+.|+++.++|+++|+|+++..+++|+++++.|+.+-.
T Consensus        47 ~~~~~~~~a~~~~~~-~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~  105 (113)
T PF13536_consen   47 VAYLLFFYALSYAPA-LVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIA  105 (113)
T ss_pred             HHHHHHHHHHHhCcH-HHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh
Confidence            344566678899985 77799999999999999999999999999999999999997744

>COG2510 Predicted membrane protein [Function unknown]

Probab=97.68  E-value=4.2e-05  Score=59.76  Aligned_cols=72  Identities=13%  Similarity=0.168  Sum_probs=61.0

Q ss_pred             HHHHHHHH-HHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheee
Q psy348           17 QHQIELVV-MFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTI   89 (293)
Q Consensus        17 ~~~~~~~~-~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~   89 (293)
                      +.++.++. .-..+-.+.+.+++- =++|...=+..++|+++++++++++|||++..+|+|++++++|+++++.
T Consensus        67 ~lflilSGla~glswl~Yf~ALk~-G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~  139 (140)
T COG2510          67 WLFLILSGLAGGLSWLLYFRALKK-GKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL  139 (140)
T ss_pred             ehhhhHHHHHHHHHHHHHHHHHhc-CCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence            34444444 355667889999996 6899888899999999999999999999999999999999999988764

>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter

Probab=97.67  E-value=0.00033  Score=61.86  Aligned_cols=68  Identities=13%  Similarity=0.052  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHHh
Q psy348          201 LGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFT  268 (293)
Q Consensus       201 ~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y~  268 (293)
                      ....+...+++...+.+++++++...++...+.|+++.+++.++++|+++..+++|+++.+.|+.+..
T Consensus        51 ~~~~~~~~l~~~~~~~a~~~~~~~~~~ii~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~  118 (260)
T TIGR00950        51 LLGALQIGVFYVLYFVAVKRLPVGEAALLLYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLL  118 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcChhhhHHHHhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhc
Confidence            33334444666677889999999999999999999999999999999999999999999999997743

>KOG2922|consensus

Probab=97.65  E-value=0.00094  Score=60.17  Aligned_cols=220  Identities=16%  Similarity=0.178  Sum_probs=123.0

Q ss_pred             HHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccCccccccCCCccc
Q psy348           25 MFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSSQEIKKYGVSDEE  104 (293)
Q Consensus        25 ~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~~~~~~~~~~~~~  104 (293)
                      .+..+-++++.|..| .|.+..+-+.+++.+...+++..+++||.+..-.+||+++++|-.+...+.+.+...   ....
T Consensus        73 tm~vGei~NFaAYaF-APasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i---~t~~  148 (335)
T KOG2922|consen   73 TMIVGEIANFAAYAF-APASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEI---ESVE  148 (335)
T ss_pred             HHHHHhHhhHHHHhh-chHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCccccc---ccHH
Confidence            477889999999999 899999999999999999999999999999999999999999999988776543110   0000


Q ss_pred             c--ccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHH-HHHhh-hHHHHHHHHHhcCC
Q psy348          105 Q--LSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPA-FAFLY-KNLYEHWLIAVNST  180 (293)
Q Consensus       105 ~--~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~-~l~~~-~~~~~~~~~~~~~~  180 (293)
                      +  +-..++.   .+.+...++-.++     +..-...++++.  ..++.|..+++... +...+ -.+-..+....++.
T Consensus       149 el~~~~~~~~---Fliy~~~iil~~~-----il~~~~~p~~g~--tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~  218 (335)
T KOG2922|consen  149 EVWELATEPG---FLVYVIIIILIVL-----ILIFFYAPRYGQ--TNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGN  218 (335)
T ss_pred             HHHHHhcCcc---HHHHHHHHHHHHH-----HHheeecccccc--cceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCC
Confidence            0  0000011   1222222211111     111111223332  24566776666421 11100 11111122111211


Q ss_pred             CCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHH-HHHHHHHHHHHhhhheeecC--cccccchh--
Q psy348          181 PLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVT-LVITLRKFVSLLFSIVYFQN--EFTLYHWT--  255 (293)
Q Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~s-v~~~l~~v~t~ils~~~fge--~lt~~~~i--  255 (293)
                       .++       ..|.-|.+++....+...-......+++.+++...+ +.-..-..++++.|.++|.|  ..+..++.  
T Consensus       219 -~ql-------~~~~ty~~~l~~~~~~~~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~  290 (335)
T KOG2922|consen  219 -NQL-------FYPLTWIFLLVVATCVSTQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGE  290 (335)
T ss_pred             -ccc-------ccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence             111       233333333222221112223334456666665543 44444567788999999998  67766654  


Q ss_pred             --hhhHHHHHHHH
Q psy348          256 --GTALVFVGTVI  266 (293)
Q Consensus       256 --G~~lv~~Gv~~  266 (293)
                        |...++.|+++
T Consensus       291 ~~Gf~ti~~G~fl  303 (335)
T KOG2922|consen  291 LCGFVTIFLGIFL  303 (335)
T ss_pred             HHhHHHhhheeeE
Confidence              56667778755

>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator

Probab=97.58  E-value=0.0012  Score=59.89  Aligned_cols=70  Identities=13%  Similarity=0.205  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHH
Q psy348          197 VFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVI  266 (293)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~  266 (293)
                      +..++..++...+.+...+..++++++...++...+.|+++.++++++++|+++..+++|.++++.|+.+
T Consensus        65 ~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l  134 (302)
T TIGR00817        65 LKLLLPVAIVHTIGHVTSNVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVAL  134 (302)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhh
Confidence            3333333333345556677889999999999999999999999999999999999999999999999976

specificities overlap.

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.52  E-value=0.00038  Score=54.52  Aligned_cols=74  Identities=14%  Similarity=0.278  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhcccchhhHH-HHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeecc
Q psy348           17 QHQIELVVMFFITNVCNNYAFDFNIAMPLH-MIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMS   91 (293)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~-~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~   91 (293)
                      .......++|..+..+...++++ +|.+.. .+......+.+.++++++++|+++..+++++.++++|++..-..+
T Consensus        31 ~~~~~~i~~~~~sf~~ls~al~~-lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~  105 (120)
T PRK10452         31 GGFILMLVMISLSYIFLSFAVKK-IALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT  105 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhh-CCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence            34556677788999999999998 999884 677788999999999999999999999999999999999886655

>PRK11689 aromatic amino acid exporter; Provisional

Probab=97.51  E-value=0.0013  Score=59.53  Aligned_cols=127  Identities=13%  Similarity=0.060  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCcccccccchHH
Q psy348          117 LGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSI  196 (293)
Q Consensus       117 ~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (293)
                      .++++.++++++|+...+..|...+..  +|.....+-...+..+++++..           .+..  +     ...+. 
T Consensus         4 ~~~l~~l~a~~~Wg~~~~~~k~~~~~~--~P~~~~~~R~~~a~l~l~~~~~-----------~~~~--~-----~~~~~-   62 (295)
T PRK11689          4 KATLIGLIAILLWSTMVGLIRGVSESL--GPVGGAAMIYSVSGLLLLLTVG-----------FPRL--R-----QFPKR-   62 (295)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHccC--ChHHHHHHHHHHHHHHHHHHcc-----------cccc--c-----cccHH-
Confidence            467788899999999999998776654  4566666655554433322110           0100  0     00111 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH----HhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHH
Q psy348          197 VFYLLGNVLTQYLCISSVYYL----TTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVI  266 (293)
Q Consensus       197 ~~~~~~~~~~~~l~~~~~~~~----i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~  266 (293)
                        .++..++.........+..    .+..++..+++...+.|+++.++++++++|+++..+++|.++.+.|+.+
T Consensus        63 --~~~~~~l~~~~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~l  134 (295)
T PRK11689         63 --YLLAGGLLFVSYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAW  134 (295)
T ss_pred             --HHHHHhHHHHHHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhh
Confidence              1111222111222222223    3567888889999999999999999999999999999999999999976

>PRK11453 O-acetylserine/cysteine export protein; Provisional

Probab=97.49  E-value=0.0016  Score=59.18  Aligned_cols=121  Identities=15%  Similarity=0.165  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCcccccccchHHHHH
Q psy348          120 TLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFY  199 (293)
Q Consensus       120 ~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (293)
                      ++.++++++|+...+..|...+.  .+|.+..++-..++....+++.           ..+..          ....   
T Consensus         7 l~~l~~~~~Wg~~~~~~k~~~~~--~~p~~~~~~R~~~a~~~l~~~~-----------~~~~~----------~~~~---   60 (299)
T PRK11453          7 VLALLVVVVWGLNFVVIKVGLHN--MPPLMLAGLRFMLVAFPAIFFV-----------ARPKV----------PLNL---   60 (299)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHhc--CCHHHHHHHHHHHHHHHHHHHh-----------cCCCC----------chHH---
Confidence            45778899999999999876653  4577777777665432222210           00100          0111   


Q ss_pred             HHHHHHH-HHHHHHHHHHHHhh-cchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHH
Q psy348          200 LLGNVLT-QYLCISSVYYLTTE-CNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVI  266 (293)
Q Consensus       200 ~~~~~~~-~~l~~~~~~~~i~~-~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~  266 (293)
                      .+..++. ........+...++ .++..+++...+.|+++.++++++++|+++..+++|.++.+.|+.+
T Consensus        61 ~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~l  129 (299)
T PRK11453         61 LLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLV  129 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHH
Confidence            1111111 11222233456666 5778889899999999999999999999999999999999999876

>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional

Probab=97.47  E-value=0.0028  Score=57.34  Aligned_cols=128  Identities=15%  Similarity=0.091  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCcccccccchHHHH
Q psy348          119 ITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVF  198 (293)
Q Consensus       119 ~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (293)
                      ++..++..+.|+...+..|...+  +.+|.+..++-..++...++++..  .+      ... .  +       ....+.
T Consensus        10 ~~~~~~~~~iWg~~~~~~K~~~~--~~~p~~~~~~R~~~a~l~ll~~~~--~~------~~~-~--~-------~~~~~~   69 (292)
T PRK11272         10 FGALFALYIIWGSTYLVIRIGVE--SWPPLMMAGVRFLIAGILLLAFLL--LR------GHP-L--P-------TLRQWL   69 (292)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhc--cCCHHHHHHHHHHHHHHHHHHHHH--Hh------CCC-C--C-------cHHHHH
Confidence            44456668999999999987655  446778888877766544333210  00      111 0  0       111222


Q ss_pred             HHH-HHHHHHHHHHHHHHHHH-hhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHH
Q psy348          199 YLL-GNVLTQYLCISSVYYLT-TECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIF  267 (293)
Q Consensus       199 ~~~-~~~~~~~l~~~~~~~~i-~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y  267 (293)
                      ... .+.+....+....+... ++.++..+++...+.|+++.+++.+ ++|+++..+++|..+.+.|+.+-
T Consensus        70 ~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll  139 (292)
T PRK11272         70 NAALIGLLLLAVGNGMVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLL  139 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHH
Confidence            222 22222222333445566 8899999999999999999999985 79999999999999999998663

>COG2962 RarD Predicted permeases [General function prediction only]

Probab=97.45  E-value=0.002  Score=57.44  Aligned_cols=139  Identities=19%  Similarity=0.291  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCcccccccchH
Q psy348          116 SLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPS  195 (293)
Q Consensus       116 ~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (293)
                      .-|+++.+.|-+.|+....+.+-+ +..  ++.|+..+-...+.|..+...- ...++....+           ....|.
T Consensus         6 ~~Gil~~l~Ay~lwG~lp~y~kll-~~~--~~~eIlahRviwS~~~~l~ll~-~~r~~~~~~~-----------~~~~p~   70 (293)
T COG2962           6 RKGILLALLAYLLWGLLPLYFKLL-EPL--PATEILAHRVIWSFPFMLALLF-LLRQWRELKQ-----------LLKQPK   70 (293)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHH-ccC--CHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHH-----------HHhCcH
Confidence            469999999999999998888554 322  3568999988888776443211 1111111111           012344


Q ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHHhhh
Q psy348          196 IVFYLLGN-VLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFTQL  270 (293)
Q Consensus       196 ~~~~~~~~-~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y~~~  270 (293)
                      -+..+..+ .+.+ .......++..+-....+|.--.+.|.+.+++|.++++|+++..|++.+++..+||..=+..
T Consensus        71 ~~~~~~l~a~li~-~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~  145 (293)
T COG2962          71 TLLMLALTALLIG-LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWL  145 (293)
T ss_pred             HHHHHHHHHHHHH-HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHH
Confidence            34333332 2222 22222234678888999999999999999999999999999999999999999999774443

>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional

Probab=97.44  E-value=0.00059  Score=54.26  Aligned_cols=72  Identities=14%  Similarity=0.271  Sum_probs=60.8

Q ss_pred             HHHHHH-HHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHH--HhccccChhhhhHHhhhhhhhhheeecc
Q psy348           19 QIELVV-MFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGII--ILKKVYTLDKYVSVIMITLGIIICTIMS   91 (293)
Q Consensus        19 ~~~~~~-~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l--~l~~~~~~~~~~~i~l~~~Gv~i~~~~~   91 (293)
                      ++..++ +|.++..+-+++++. ++.+...-+.+..++.+++.++.  ++||+++.++++|++++++|+.+....+
T Consensus        50 ~i~lgl~~~~la~~~w~~aL~~-~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~  124 (129)
T PRK02971         50 AVLLGLAGYALSMLCWLKALRY-LPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT  124 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence            333444 588889999999997 99999888878888888888875  8999999999999999999999987543

>PRK11431 multidrug efflux system protein; Provisional

Probab=97.42  E-value=0.00069  Score=51.82  Aligned_cols=73  Identities=16%  Similarity=0.235  Sum_probs=63.6

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhcccchhhH-HHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheee
Q psy348           16 NQHQIELVVMFFITNVCNNYAFDFNIAMPL-HMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTI   89 (293)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~-~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~   89 (293)
                      +...+....+|..+..+...+++. +|.+. |.+-.....+.+.+++++++||+.+..+++++.++++|++..-.
T Consensus        29 ~~~~~~~i~~~~~sf~~Ls~al~~-ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l  102 (105)
T PRK11431         29 LTPSIITVTAMIVSMALLAWAMKS-LPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL  102 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh-CCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            344456667788899999999997 99987 58888889999999999999999999999999999999988643

>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins

Probab=97.42  E-value=0.00054  Score=55.45  Aligned_cols=72  Identities=10%  Similarity=0.161  Sum_probs=65.6

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhhee
Q psy348           16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICT   88 (293)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~   88 (293)
                      +...+..+++.+..+...+..+++ +|+-+++++...+.+++.++++++++|+++..++.|++++++|+.+..
T Consensus        81 ~~~~~~~~~~~~~~n~~~f~~i~~-tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys  152 (153)
T PF03151_consen   81 IFLLILSGLLAFLYNLSSFLLIKL-TSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS  152 (153)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh-cChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence            555566677788889999999998 999999999999999999999999999999999999999999998764

O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=97.38  E-value=0.00063  Score=51.74  Aligned_cols=74  Identities=15%  Similarity=0.220  Sum_probs=64.8

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhcccchhhH-HHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeec
Q psy348           16 NQHQIELVVMFFITNVCNNYAFDFNIAMPL-HMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIM   90 (293)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~-~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~   90 (293)
                      .+......+++..+..+.-.++++ +|.+. |.+-...-.+.+.+.++++++|+.+..+++++.++++|++..-..
T Consensus        30 ~~~~il~~v~~~~sf~~Ls~alk~-ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~  104 (106)
T COG2076          30 LWPSILTIVGYGLSFYLLSLALKT-IPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG  104 (106)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhh-CchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence            445566677788889999999998 99988 588888999999999999999999999999999999999876543

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=97.36  E-value=0.00087  Score=51.57  Aligned_cols=71  Identities=8%  Similarity=0.183  Sum_probs=61.9

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhcccchhhH-HHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhhe
Q psy348           16 NQHQIELVVMFFITNVCNNYAFDFNIAMPL-HMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIIC   87 (293)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~-~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~   87 (293)
                      +........++..+..+...+++. +|.+. |.+-.....+.+.+.+++++||+++..+++++.+++.|++..
T Consensus        35 ~~~~~~~~~~~~~sf~~Ls~al~~-lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l  106 (109)
T PRK10650         35 KIYGILSLAAVLAAFSALSQAVKG-IDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI  106 (109)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhh-CchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence            334555666788889999999998 99988 588888889999999999999999999999999999999875

>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional

Probab=97.35  E-value=0.0048  Score=57.41  Aligned_cols=131  Identities=9%  Similarity=0.055  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCcccccccchHHHHHH
Q psy348          121 LLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVFYL  200 (293)
Q Consensus       121 l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  200 (293)
                      +++.--.++..+.++.|.+++..+ .|+.+..+..+++.....++..     .. ....+..  +      .....+..+
T Consensus        53 ~~~~wy~~s~~~~~~nK~vl~~~~-~P~~l~~~~~~~~~l~~~~~~~-----~~-~~~~~~~--~------~~~~~~~~l  117 (350)
T PTZ00343         53 LFLTWYALNVLYVVDNKLALNMLP-LPWTISSLQLFVGWLFALLYWA-----TG-FRKIPRI--K------SLKLFLKNF  117 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCC-hhHHHHHHHHHHHHHHHHHHHH-----hC-CCCCCCC--C------CHHHHHHHH
Confidence            333334455667888888887764 2666666655555322211110     00 0000100  0      011233333


Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHH
Q psy348          201 LGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVI  266 (293)
Q Consensus       201 ~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~  266 (293)
                      +..++.+..+....+.+++++++...+++-.+.|+++.++++++++|+++..+++|.++++.|+.+
T Consensus       118 lp~gl~~~~~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l  183 (350)
T PTZ00343        118 LPQGLCHLFVHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVAL  183 (350)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHh
Confidence            333443333333445689999999999999999999999999999999999999999999999976

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=97.23  E-value=0.0012  Score=50.86  Aligned_cols=74  Identities=8%  Similarity=0.229  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhcccchhhHH-HHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeecc
Q psy348           17 QHQIELVVMFFITNVCNNYAFDFNIAMPLH-MIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMS   91 (293)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~-~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~   91 (293)
                      .......++|..+..+...+++. +|.+.. .+-....-+.+.++++++++|+++..+++++.++++|++..-..+
T Consensus        31 ~~~i~~~~~~~~sf~~l~~al~~-ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~  105 (110)
T PRK09541         31 WPSVGTIICYCASFWLLAQTLAY-IPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS  105 (110)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhh-CCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            34445666788888999999998 999885 666778899999999999999999999999999999999986543

>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein

Probab=97.20  E-value=0.0021  Score=58.18  Aligned_cols=129  Identities=11%  Similarity=0.025  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCcccccccchHHH
Q psy348          118 GITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIV  197 (293)
Q Consensus       118 G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (293)
                      |+++.++++++|+...+..|+..   +.++.+...  ..++...+.... .+   +    ..+..         ..+..+
T Consensus         2 ~~l~~lia~~~wGs~g~~~k~~~---g~~~~~~~~--~~~g~l~~~~~~-~~---~----~~~~~---------~~~~~~   59 (290)
T TIGR00776         2 DILIALIPALFWGSFVLINVKIG---GGPYSQTLG--TTFGALILSIAI-AI---F----VLPEF---------WALSIF   59 (290)
T ss_pred             chHHHHHHHHHHhhhHHHHhccC---CCHHHHHHH--HHHHHHHHHHHH-HH---H----hCCcc---------cccHHH
Confidence            67889999999999999887654   333333321  112211111100 00   1    11111         123334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH-HHHHHHHhhhheeecCcccccc----hhhhhHHHHHHHHHh
Q psy348          198 FYLLGNVLTQYLCISSVYYLTTECNSLTVTLVIT-LRKFVSLLFSIVYFQNEFTLYH----WTGTALVFVGTVIFT  268 (293)
Q Consensus       198 ~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~-l~~v~t~ils~~~fge~lt~~~----~iG~~lv~~Gv~~Y~  268 (293)
                      ..-+..++.-..++...+.++++.+........+ +.++...+.+.++|+|+.+..+    ++|.++++.|+.+..
T Consensus        60 ~~g~l~G~~w~ig~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~  135 (290)
T TIGR00776        60 LVGLLSGAFWALGQINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTS  135 (290)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEE
Confidence            4333333323367778888999999999877777 8888999999999999999999    999999999987743

These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.

>PRK10452 multidrug efflux system protein MdtJ; Provisional

Probab=97.01  E-value=0.003  Score=49.47  Aligned_cols=56  Identities=16%  Similarity=0.252  Sum_probs=46.7

Q ss_pred             HHHHHHHhhcchhH-HHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHH
Q psy348          212 SSVYYLTTECNSLT-VTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIF  267 (293)
Q Consensus       212 ~~~~~~i~~~sa~~-~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y  267 (293)
                      ..+..++++.+-.. .++..-+.-+.+.++|+++|||++|+.+++|+++++.|+..-
T Consensus        45 ~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l  101 (120)
T PRK10452         45 IFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLI  101 (120)
T ss_pred             HHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHh
Confidence            34445788887666 556567888999999999999999999999999999999774

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.00  E-value=0.013  Score=54.15  Aligned_cols=136  Identities=12%  Similarity=0.029  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhh---hHHH-HHHH-HHhcCCCCCCCccccc
Q psy348          116 SLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLY---KNLY-EHWL-IAVNSTPLPLPSYLSF  190 (293)
Q Consensus       116 ~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~---~~~~-~~~~-~~~~~~~~~~~~~~~~  190 (293)
                      ..|+++++++.+|++...+-+|+    ++.-++|.. |. ..++...++..   +.+. +.+. .+..            
T Consensus         6 ~~G~~~~~i~~~~~GS~~~p~K~----~k~w~wE~~-W~-v~gi~~wl~~~~~~g~~~~~~f~~~~~~------------   67 (345)
T PRK13499          6 ILGIIWHLIGGASSGSFYAPFKK----VKKWSWETM-WS-VGGIFSWLILPWLIAALLLPDFWAYYSS------------   67 (345)
T ss_pred             HHHHHHHHHHHHHhhcccccccc----cCCCchhHH-HH-HHHHHHHHHHHHHHHHHHhhhHHHHHHh------------
Confidence            78999999999999998888865    232346655 43 22221111111   1111 1111 1110            


Q ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhH-HHHHHHHHHHHHHhhhheeecC-------cccccchhhhhHHHH
Q psy348          191 ISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLT-VTLVITLRKFVSLLFSIVYFQN-------EFTLYHWTGTALVFV  262 (293)
Q Consensus       191 ~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~-~sv~~~l~~v~t~ils~~~fge-------~lt~~~~iG~~lv~~  262 (293)
                       .++..+...++.++.--+++...+..+++.+-.. ..+..-+.-+.+.+++.+++||       +-.....+|+++++.
T Consensus        68 -~~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~lili  146 (345)
T PRK13499         68 -FSGSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALI  146 (345)
T ss_pred             -cCHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHH
Confidence             1233344433333322266777777788887655 5566667778899999999986       222347789999999


Q ss_pred             HHHHHhhh
Q psy348          263 GTVIFTQL  270 (293)
Q Consensus       263 Gv~~Y~~~  270 (293)
                      |+.+-++.
T Consensus       147 Gi~l~s~A  154 (345)
T PRK13499        147 GVAIVGRA  154 (345)
T ss_pred             HHHHHHHh
Confidence            99886653

>PRK13499 rhamnose-proton symporter; Provisional

Probab=97.00  E-value=0.12  Score=47.89  Aligned_cols=226  Identities=15%  Similarity=0.161  Sum_probs=125.2

Q ss_pred             HHHHHHHHHHHHhhhhhhcccchhhHHH-HHhhchhHHHHHHHHHHhcccc---C----hhhhhHHhhhhhhhhheeecc
Q psy348           20 IELVVMFFITNVCNNYAFDFNIAMPLHM-IFRAGSLITNMIMGIIILKKVY---T----LDKYVSVIMITLGIIICTIMS   91 (293)
Q Consensus        20 ~~~~~~~~~~~~~~~~~L~y~vs~s~~~-~~~~~~pi~t~l~~~l~l~~~~---~----~~~~~~i~l~~~Gv~i~~~~~   91 (293)
                      ++-++++..+++....+++| +-+|... +...+..+...++..++++|=.   +    ..-..+++++++|+++.+...
T Consensus        77 ~l~G~~W~iG~i~~~~s~~~-iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag  155 (345)
T PRK13499         77 FLFGALWGIGGITYGLTMRY-LGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAG  155 (345)
T ss_pred             HHHHHHHHhhhhhHHHHHHH-hhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhh
Confidence            45556788889999999999 8888874 6667888899999999988533   2    446788999999999999833


Q ss_pred             CccccccCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHcCCCCcchhhhhhhhhHHHHH-
Q psy348           92 SQEIKKYGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGI-------YQEVLYKTHGKYPYEALYYTHLLPLPAFA-  163 (293)
Q Consensus        92 ~~~~~~~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v-------~~~~l~~~~~~~~~~~~~y~~~~~~~~~l-  163 (293)
                      .....+..  .+++++++     ...|.++.++|.+.++.|+.       ..+.. ...+.++    .|..   +|.+. 
T Consensus       156 ~~k~~~~~--~~~~~~~~-----~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a-~~~g~~~----~~~~---lp~~~~  220 (345)
T PRK13499        156 QLKERKMG--IKKAEEFN-----LKKGLILAVMSGIFSACFSFAMDAGKPMHEAA-AALGVDP----LYAA---LPSYVV  220 (345)
T ss_pred             hhcccccc--cccccccc-----hHhHHHHHHHHHHHHHHHHHHHhhccchhhhh-hhcCCCc----hHHH---HHHHHH
Confidence            22111000  00001111     36899999999999999883       33221 1123222    1211   12111 


Q ss_pred             -----HhhhHHHHHHHHHhcCCCCCCCcccccccc-----hHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHH---HH
Q psy348          164 -----FLYKNLYEHWLIAVNSTPLPLPSYLSFISI-----PSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTL---VI  230 (293)
Q Consensus       164 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv---~~  230 (293)
                           +....++..+.... +...+...   ....     ..-.....+.++.-++++......-++.+.....+   ..
T Consensus       221 ~~~G~~~~n~~~~~~~~~k-~~~~~~~~---~~~~~~~~~~~n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~  296 (345)
T PRK13499        221 IMGGGAITNLGFCFIRLAK-NKDLSLKA---DFSLAKPLLITNVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLH  296 (345)
T ss_pred             HHHHHHHHHHHHHHHHHhh-CCCcccch---hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHh
Confidence                 01111111111111 11110000   0011     11122233333434455555555556664443333   22


Q ss_pred             -HHHHHHHHhhhheeecCccc------ccchhhhhHHHHHHHH
Q psy348          231 -TLRKFVSLLFSIVYFQNEFT------LYHWTGTALVFVGTVI  266 (293)
Q Consensus       231 -~l~~v~t~ils~~~fge~lt------~~~~iG~~lv~~Gv~~  266 (293)
                       -+.-+++.+-|+ +++|.=+      ...++|.++++.|..+
T Consensus       297 m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~l  338 (345)
T PRK13499        297 MSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANI  338 (345)
T ss_pred             ccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHH
Confidence             444467777777 5999666      6678999999999876

>PRK10532 threonine and homoserine efflux system; Provisional

Probab=96.99  E-value=0.0022  Score=58.11  Aligned_cols=65  Identities=12%  Similarity=0.064  Sum_probs=59.4

Q ss_pred             HHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeecc
Q psy348           26 FFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMS   91 (293)
Q Consensus        26 ~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~   91 (293)
                      ...+..+.|.++++ ++++..+++..+.|++..++++++++|+++..+++|+++++.|++......
T Consensus       219 t~~~~~l~~~~~~~-~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~  283 (293)
T PRK10532        219 TALPYSLEMIALTR-LPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTI  283 (293)
T ss_pred             HHHHHHHHHHHHHh-cChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcC
Confidence            45667788999998 999999999999999999999999999999999999999999998876544

>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]

Probab=96.97  E-value=0.016  Score=51.26  Aligned_cols=136  Identities=15%  Similarity=0.123  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCcccccccchH
Q psy348          116 SLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPS  195 (293)
Q Consensus       116 ~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (293)
                      ..+..+.+.+.+.++......+...+. .........+....+........ .    .   ......  +     ...+ 
T Consensus         6 ~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~----~---~~~~~~--~-----~~~~-   68 (292)
T COG0697           6 LLGLLALLLWGLLWGLSFIALKLAVES-LDPFLFAAALRFLIAALLLLPLL-L----L---EPRGLR--P-----ALRP-   68 (292)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcc-cCChHHHHHHHHHHHHHHHHHHH-H----h---hccccc--c-----cccc-
Confidence            567778888888888888877766554 11222233323333222211110 0    0   000001  0     0111 


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhh-eeecCcccccchhhhhHHHHHHHHHh
Q psy348          196 IVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSI-VYFQNEFTLYHWTGTALVFVGTVIFT  268 (293)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~-~~fge~lt~~~~iG~~lv~~Gv~~Y~  268 (293)
                      .+...+...+....+....+..++++++...++.....|+++.++++ ++++|+++..+++|..+.+.|+.+-.
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~  142 (292)
T COG0697          69 WLLLLLLALLGLALPFLLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLIL  142 (292)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhee
Confidence            12223333333335556677789999999999999999999999997 77799999999999999999997733

>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles

Probab=96.86  E-value=0.0031  Score=55.68  Aligned_cols=60  Identities=13%  Similarity=0.286  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHHh
Q psy348          209 LCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFT  268 (293)
Q Consensus       209 l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y~  268 (293)
                      +.+...|..+++.+|.+..+....|.++|.++++++++.+++..||++..+.+.|+.+..
T Consensus        29 ~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~   88 (244)
T PF04142_consen   29 IQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQ   88 (244)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheee
Confidence            555667789999999999999999999999999999999999999999999999998744

P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane

>PRK09541 emrE multidrug efflux protein; Reviewed

Probab=96.83  E-value=0.0055  Score=47.29  Aligned_cols=55  Identities=13%  Similarity=0.113  Sum_probs=46.7

Q ss_pred             HHHHHHhhcchhH-HHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHH
Q psy348          213 SVYYLTTECNSLT-VTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIF  267 (293)
Q Consensus       213 ~~~~~i~~~sa~~-~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y  267 (293)
                      ....++++.+-.. .++..-+.-+.+.+.|+++|||++++.+++|+++++.|+..-
T Consensus        46 ~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l  101 (110)
T PRK09541         46 LLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVI  101 (110)
T ss_pred             HHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHH
Confidence            3445688888766 566677888999999999999999999999999999999773

>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []

Probab=96.74  E-value=0.013  Score=53.31  Aligned_cols=62  Identities=11%  Similarity=0.164  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHHhhh
Q psy348          209 LCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFTQL  270 (293)
Q Consensus       209 l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y~~~  270 (293)
                      +.....+.++++.|..+..+.-..+++.++++++++++++.+..++.+.+++..|+.+++..
T Consensus        76 ~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~  137 (303)
T PF08449_consen   76 LASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLS  137 (303)
T ss_pred             HHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeec
Confidence            33344556899999999999999999999999999999999999999999999999987744

; GO: 0055085 transmembrane transport

>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]

Probab=96.74  E-value=0.0087  Score=45.58  Aligned_cols=51  Identities=14%  Similarity=0.184  Sum_probs=46.1

Q ss_pred             HHHhhcchhH-HHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHH
Q psy348          216 YLTTECNSLT-VTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVI  266 (293)
Q Consensus       216 ~~i~~~sa~~-~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~  266 (293)
                      ..+++.+-.+ .++.+-+-.+.+.+.|+++|||++++.+++|++++++|+..
T Consensus        49 ~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~  100 (106)
T COG2076          49 LALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIG  100 (106)
T ss_pred             HHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHH
Confidence            4688888665 78889999999999999999999999999999999999965

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=96.68  E-value=0.0032  Score=48.67  Aligned_cols=71  Identities=13%  Similarity=0.215  Sum_probs=63.0

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHH-hhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhhe
Q psy348           16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIF-RAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIIC   87 (293)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~-~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~   87 (293)
                      ..+|..+-+++-.+++..++.|.- .|.|...-+ .++.-++|++.++++.+|..+++.+.|+.+++.|+.++
T Consensus        41 n~~y~ipf~lNq~GSv~f~~~L~~-~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc  112 (113)
T PF10639_consen   41 NPKYIIPFLLNQSGSVLFFLLLGS-ADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC  112 (113)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhc-CCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence            457778888899999999999996 899998644 68999999999999999999999999999999999875

Many members are annotated as potential transmembrane proteins.

>PRK10650 multidrug efflux system protein MdtI; Provisional

Probab=96.66  E-value=0.0098  Score=45.76  Aligned_cols=54  Identities=15%  Similarity=0.204  Sum_probs=46.7

Q ss_pred             HHHHHHhhcchhH-HHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHH
Q psy348          213 SVYYLTTECNSLT-VTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVI  266 (293)
Q Consensus       213 ~~~~~i~~~sa~~-~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~  266 (293)
                      ....++++.+-.+ .++..-+..+.+.+.|+++|||++++.+++|+++++.|+..
T Consensus        51 ~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~  105 (109)
T PRK10650         51 ALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVM  105 (109)
T ss_pred             HHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHH
Confidence            3334678887665 78888889999999999999999999999999999999965

>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function

Probab=96.53  E-value=0.015  Score=53.03  Aligned_cols=115  Identities=17%  Similarity=0.092  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCcccccccch
Q psy348          115 WSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIP  194 (293)
Q Consensus       115 ~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (293)
                      ...|..+.+.++++.+...++||+-..|.+.....--  ...                      .+     +    ..+|
T Consensus         5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~~~~~--~~~----------------------~~-----~----l~~~   51 (300)
T PF05653_consen    5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGSLRAG--SGG----------------------RS-----Y----LRRP   51 (300)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc--chh----------------------hH-----H----HhhH
Confidence            3899999999999999999999988776543111000  000                      00     0    1234


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHH
Q psy348          195 SIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVI  266 (293)
Q Consensus       195 ~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~  266 (293)
                      .+|..+.+.+++.    ..-+.+....++...+..+.+.-+.+.+++-.+++|+++...++|.++++.|..+
T Consensus        52 ~W~~G~~~~~~g~----~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~l  119 (300)
T PF05653_consen   52 LWWIGLLLMVLGE----ILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVL  119 (300)
T ss_pred             HHHHHHHHHhcch----HHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhhee
Confidence            4455554444433    2334577888888899999999999999999999999999999999999999866

>PRK11431 multidrug efflux system protein; Provisional

Probab=96.53  E-value=0.013  Score=44.84  Aligned_cols=53  Identities=11%  Similarity=0.060  Sum_probs=46.5

Q ss_pred             HHHHHhhcchhH-HHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHH
Q psy348          214 VYYLTTECNSLT-VTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVI  266 (293)
Q Consensus       214 ~~~~i~~~sa~~-~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~  266 (293)
                      ...++++.+-.. .++..-+..+.+.+.|+++|||++++.+++|+++++.|++.
T Consensus        46 Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~   99 (105)
T PRK11431         46 LAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIG   99 (105)
T ss_pred             HHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHh
Confidence            334678887655 78888899999999999999999999999999999999976

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=96.49  E-value=0.0072  Score=45.13  Aligned_cols=61  Identities=13%  Similarity=0.284  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhHH-HHHhhchhHHHHHHHHHHhccccChhhhhHHhhh
Q psy348           19 QIELVVMFFITNVCNNYAFDFNIAMPLH-MIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMI   80 (293)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~L~y~vs~s~~-~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~   80 (293)
                      ......+|..+..+...+++. +|.+.. .+......+.+.+.+.+++||+.+..|+.++.++
T Consensus        32 ~~~~~~~~~~s~~~l~~al~~-lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   32 TILAVVGYGLSFYFLSLALKK-LPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             --HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            334444788889999999997 999885 7888899999999999999999999999998764

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins

Probab=96.22  E-value=0.084  Score=42.40  Aligned_cols=130  Identities=22%  Similarity=0.244  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCcccccccchHHHH
Q psy348          119 ITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPSIVF  198 (293)
Q Consensus       119 ~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (293)
                      .++.+++-++-+++...+.++.++.+ +|+...+.++..+......+. .+.+.       +..  +..   ...| .|.
T Consensus         3 ~lla~~aG~~i~~q~~~N~~L~~~~g-s~~~as~i~~~~G~i~~~i~~-~~~~~-------~~~--~~~---~~~p-~w~   67 (138)
T PF04657_consen    3 ILLALLAGALIALQAAFNGQLGKALG-SPLVASFISFGVGFILLLIIL-LITGR-------PSL--ASL---SSVP-WWA   67 (138)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHH-HHhcc-------ccc--chh---ccCC-hHH
Confidence            34555566666777888888877766 466666666666644322211 00010       000  000   0111 222


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhhe--eec---CcccccchhhhhHHHHHHH
Q psy348          199 YLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIV--YFQ---NEFTLYHWTGTALVFVGTV  265 (293)
Q Consensus       199 ~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~--~fg---e~lt~~~~iG~~lv~~Gv~  265 (293)
                      ++  .++.+..........+.+.++.........-++++.++=--  +||   +++++.+.+|.++++.|+.
T Consensus        68 ~l--GG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~  137 (138)
T PF04657_consen   68 YL--GGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVI  137 (138)
T ss_pred             hc--cHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHh
Confidence            22  23333233444556789999999999988888877655443  344   5999999999999999985

>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function

Probab=96.21  E-value=0.077  Score=48.99  Aligned_cols=70  Identities=16%  Similarity=0.224  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHH
Q psy348          196 IVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVI  266 (293)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~  266 (293)
                      .|.+++.+ +.=+.+|.....+.++++.+..++......++++++|+++++++.++.|++|++++++|+.+
T Consensus        79 ~w~y~lla-~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~l  148 (334)
T PF06027_consen   79 WWKYFLLA-LLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVL  148 (334)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhh
Confidence            35555553 34446777777889999999999999999999999999999999999999999999999876

Some of the sequences in this family are annotated as putative membrane proteins.

>KOG4510|consensus

Probab=95.71  E-value=0.0015  Score=57.54  Aligned_cols=64  Identities=13%  Similarity=0.334  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHH
Q psy348          204 VLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIF  267 (293)
Q Consensus       204 ~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y  267 (293)
                      ++.++.+....|++..+.+-.-+++++-..|+++++++|++++|+.|....+|..+.+.|+++-
T Consensus       104 g~mG~tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLI  167 (346)
T KOG4510|consen  104 GFMGFTGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLI  167 (346)
T ss_pred             hhhhhhHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEE
Confidence            4444455566778899999999999999999999999999999999999999999999999773

>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins

Probab=95.44  E-value=0.034  Score=41.48  Aligned_cols=48  Identities=15%  Similarity=0.248  Sum_probs=26.9

Q ss_pred             HHHHHHhhcchhHH-HHHHHHHHHHHHhhhheeecCcccccchhhhhHH
Q psy348          213 SVYYLTTECNSLTV-TLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALV  260 (293)
Q Consensus       213 ~~~~~i~~~sa~~~-sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv  260 (293)
                      ....++++.+...+ .+..-+..+.+.+.|+++|||++|+.+++|++++
T Consensus        45 ~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI   93 (93)
T PF00893_consen   45 FLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI   93 (93)
T ss_dssp             HHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence            44457888887775 6667788999999999999999999999999875

They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=94.96  E-value=0.0044  Score=53.99  Aligned_cols=210  Identities=13%  Similarity=0.171  Sum_probs=127.5

Q ss_pred             HHHHHHHHHhhhhhhcccchhhHHH-HHhhchhHHHHHHHHHHhccccChhhh----hHHhhhhhhhhheeeccCccccc
Q psy348           23 VVMFFITNVCNNYAFDFNIAMPLHM-IFRAGSLITNMIMGIIILKKVYTLDKY----VSVIMITLGIIICTIMSSQEIKK   97 (293)
Q Consensus        23 ~~~~~~~~~~~~~~L~y~vs~s~~~-~~~~~~pi~t~l~~~l~l~~~~~~~~~----~~i~l~~~Gv~i~~~~~~~~~~~   97 (293)
                      +.++..+....+-+.++ +.+|... +-.....+-+.+++++.+||=.+..|.    .+++++++|+.+.+..|..+.. 
T Consensus        66 G~~Ws~GQ~~Qfka~~~-iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~-  143 (288)
T COG4975          66 GAFWSFGQANQFKAIQL-IGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKE-  143 (288)
T ss_pred             hhHhhhhhhhhhhheee-eeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeecccccc-
Confidence            34577778888889998 8877764 444466777788999999998777664    5778889999999988754321 


Q ss_pred             cCCCccccccccchhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHh
Q psy348           98 YGVSDEEQLSYSENLFWWSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAV  177 (293)
Q Consensus        98 ~~~~~~~~~~~s~~~~~~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~  177 (293)
                           ++ ++.+     .-.|....+.|.+.+-.|.+..+..    +.+-+.... -+.+++....+    .....    
T Consensus       144 -----~~-~~~n-----~kkgi~~L~iSt~GYv~yvvl~~~f----~v~g~saiL-PqAiGMv~~al----i~~~~----  199 (288)
T COG4975         144 -----EE-NPSN-----LKKGIVILLISTLGYVGYVVLFQLF----DVDGLSAIL-PQAIGMVIGAL----ILGFF----  199 (288)
T ss_pred             -----cc-ChHh-----hhhheeeeeeeccceeeeEeeeccc----cccchhhhh-HHHHHHHHHHH----HHhhc----
Confidence                 11 1111     2568888888888888887766432    222222111 11222221111    11100    


Q ss_pred             cCCCCCCCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccc----
Q psy348          178 NSTPLPLPSYLSFISIPSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYH----  253 (293)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~----  253 (293)
                      ..+.         ..+-..|.-+....+.+ .+|...+.+.++.+-.+.=-.+-+--+++.+-|+++++|+=|..+    
T Consensus       200 ~~~~---------~~~K~t~~nii~G~~Wa-~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v  269 (288)
T COG4975         200 KMEK---------RFNKYTWLNIIPGLIWA-IGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYV  269 (288)
T ss_pred             cccc---------chHHHHHHHHhhHHHHH-hhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhh
Confidence            1010         01223344444444444 666666667777776654334445567788999999999777654    


Q ss_pred             hhhhhHHHHHHHHHh
Q psy348          254 WTGTALVFVGTVIFT  268 (293)
Q Consensus       254 ~iG~~lv~~Gv~~Y~  268 (293)
                      ++|+.+++.|..+-.
T Consensus       270 ~iGiilivvgai~lg  284 (288)
T COG4975         270 IIGIILIVVGAILLG  284 (288)
T ss_pred             hhhHHHHHHHhhhhh
Confidence            678888888876633

>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long

Probab=94.92  E-value=0.085  Score=47.08  Aligned_cols=72  Identities=8%  Similarity=0.077  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHH-HHHHHHHHhhhheeecCcccccc----hhhhhHHHHHHHH
Q psy348          195 SIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVI-TLRKFVSLLFSIVYFQNEFTLYH----WTGTALVFVGTVI  266 (293)
Q Consensus       195 ~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~-~l~~v~t~ils~~~fge~lt~~~----~iG~~lv~~Gv~~  266 (293)
                      ..+...+++++.-.+++...|.+.++.+.+.+...+ -++-+.+.+.++++|||--+..+    .+++++++.|+.+
T Consensus        43 ~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liiiGv~l  119 (269)
T PF06800_consen   43 TSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIIIGVIL  119 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHHHHHH
Confidence            444444555544447888888888888888776665 45556688999999999555444    4488889999866

Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane

>TIGR00803 nst UDP-galactose transporter

Probab=94.65  E-value=0.045  Score=47.33  Aligned_cols=69  Identities=10%  Similarity=0.142  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhh
Q psy348           17 QHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIII   86 (293)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i   86 (293)
                      ...+.+.++....-.+-+..++| .+..+..+...+.++++.++++++++++++..++.|+.++..|+.+
T Consensus       153 ~~~~~~~~~~a~~~~~v~~vlk~-~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l  221 (222)
T TIGR00803       153 TAVWIVGLLNVGGGLCIGGVVRY-ADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL  221 (222)
T ss_pred             hHHHHHHHHHHhcCceeeehhHH-hHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence            33445555566667788999999 8999999999999999999999999999999999999999998754

NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.

>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]

Probab=94.30  E-value=0.075  Score=46.67  Aligned_cols=61  Identities=11%  Similarity=0.087  Sum_probs=54.1

Q ss_pred             HHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeecc
Q psy348           30 NVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMS   91 (293)
Q Consensus        30 ~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~   91 (293)
                      ..+...+|+. .+.+.+.++-++.|.+-.+.++++++|+++..||+++..++.+.+=.....
T Consensus       224 YsLEmiAL~r-lp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~  284 (292)
T COG5006         224 YSLEMIALRR-LPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTA  284 (292)
T ss_pred             hHHHHHHHhh-CChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcccccc
Confidence            4678889997 999999999999999999999999999999999999999998876555443

>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function

Probab=93.88  E-value=0.076  Score=41.06  Aligned_cols=68  Identities=16%  Similarity=0.214  Sum_probs=50.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHH-HHHHHHHHHhhhheeecCcccccchhhhhHHHHHHH
Q psy348          194 PSIVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLV-ITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTV  265 (293)
Q Consensus       194 ~~~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~-~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~  265 (293)
                      |..+...++|-.++    ..+++.+++.+-+.+..+ ..+.=++|.+.++++.+|..+...++|+++++.|+.
T Consensus        42 ~~y~ipf~lNq~GS----v~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~  110 (113)
T PF10639_consen   42 PKYIIPFLLNQSGS----VLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVA  110 (113)
T ss_pred             HHHHHHHHHHHHHH----HHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCee
Confidence            33444455554444    244556888877666655 477889999999998888999999999999999974

Many members are annotated as potential transmembrane proteins.

>KOG2765|consensus

Probab=93.66  E-value=0.057  Score=49.90  Aligned_cols=68  Identities=16%  Similarity=0.188  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHHh
Q psy348          201 LGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFT  268 (293)
Q Consensus       201 ~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y~  268 (293)
                      +.-|...++++.....+++.++....++......+++.+++.++-+|++|+...++..+.++|+++-+
T Consensus       163 l~fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt  230 (416)
T KOG2765|consen  163 LFFCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVT  230 (416)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEE
Confidence            33455566777777778999999999999999999999999999999999999999999999987733

>KOG2234|consensus

Probab=91.60  E-value=0.54  Score=43.25  Aligned_cols=58  Identities=17%  Similarity=0.413  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHH
Q psy348          209 LCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVI  266 (293)
Q Consensus       209 l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~  266 (293)
                      +-|...|....+.+|.+.++...++-..|.++++++++++++.+||...++.++|+.+
T Consensus       104 lqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~  161 (345)
T KOG2234|consen  104 LQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVAL  161 (345)
T ss_pred             HhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            4455667789999999999999999999999999999999999999999999999977

>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function

Probab=89.99  E-value=0.36  Score=42.79  Aligned_cols=66  Identities=14%  Similarity=0.068  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHhhcchhH-HHHHHHHHHHHHHhhhhe-eecC-----cccccchhhhhHHHHHHHHHhhhcccc
Q psy348          209 LCISSVYYLTTECNSLT-VTLVITLRKFVSLLFSIV-YFQN-----EFTLYHWTGTALVFVGTVIFTQLVPSL  274 (293)
Q Consensus       209 l~~~~~~~~i~~~sa~~-~sv~~~l~~v~t~ils~~-~fge-----~lt~~~~iG~~lv~~Gv~~Y~~~~~k~  274 (293)
                      .+|.....+++..+=.. ..+-++..-+.....|-+ +||+     .-.+++++|+++++.|..+|..+.++.
T Consensus        67 ~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~  139 (254)
T PF07857_consen   67 TGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEE  139 (254)
T ss_pred             cCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCC
Confidence            34444444566655333 344455555556666643 6764     456789999999999999998765444

The region concerned is approximately 280 residues long.

>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family

Probab=89.78  E-value=5.5  Score=36.76  Aligned_cols=36  Identities=17%  Similarity=0.284  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhh
Q psy348          115 WSLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYT  154 (293)
Q Consensus       115 ~~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~  154 (293)
                      ...|+++..++.++++.+.+=.|+.    ..=++|.....
T Consensus         5 ii~Gii~h~iGg~~~~sfy~P~kkv----k~WsWEs~Wlv   40 (344)
T PF06379_consen    5 IILGIIFHAIGGFASGSFYVPFKKV----KGWSWESYWLV   40 (344)
T ss_pred             HHHHHHHHHHHHHHhhhhccchhhc----CCccHHHHHHH
Confidence            4899999999999998877766543    33346765544

This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane

>KOG1580|consensus

Probab=89.70  E-value=0.3  Score=42.52  Aligned_cols=80  Identities=5%  Similarity=0.065  Sum_probs=65.6

Q ss_pred             ccccch--hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhhe
Q psy348           10 IIPRHI--NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIIC   87 (293)
Q Consensus        10 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~   87 (293)
                      +..|++  ++++..++++-+++..+-+.-..+ -++=+.+++..+.-.||++.++++++...+.+||++..+...|...=
T Consensus       233 F~~RhP~~~~~l~l~ai~s~LGQ~fIF~tv~~-FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~D  311 (337)
T KOG1580|consen  233 FVQRHPYVFWDLTLLAIASCLGQWFIFKTVEE-FGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTAD  311 (337)
T ss_pred             HHHhccHHHHHHHHHHHHHHhhhHHHHHHHHH-hCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhH
Confidence            334555  888889999888888887777776 56666778888889999999999999999999999999999888664


Q ss_pred             eec
Q psy348           88 TIM   90 (293)
Q Consensus        88 ~~~   90 (293)
                      ..+
T Consensus       312 ~~~  314 (337)
T KOG1580|consen  312 VVD  314 (337)
T ss_pred             hhc
Confidence            444

>KOG4831|consensus

Probab=86.17  E-value=0.95  Score=34.33  Aligned_cols=72  Identities=11%  Similarity=0.123  Sum_probs=60.5

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhcccchhhHHH-HHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhhee
Q psy348           16 NQHQIELVVMFFITNVCNNYAFDFNIAMPLHM-IFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICT   88 (293)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~-~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~   88 (293)
                      .++|+++-.++-+++.+.+.-|.. .+.+... +..+++-.++.+.+..+-.|...++.++|..++++|+.++.
T Consensus        52 ~w~Y~iPFllNqcgSaly~~tLa~-a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci  124 (125)
T KOG4831|consen   52 NWEYLIPFLLNQCGSALYYLTLAS-APISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI  124 (125)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHhc-CCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence            567888888889999999999986 7888775 55667888999999888888888999999999999987753

>KOG1441|consensus

Probab=85.40  E-value=0.22  Score=45.61  Aligned_cols=71  Identities=11%  Similarity=0.091  Sum_probs=62.7

Q ss_pred             HHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeeccC
Q psy348           21 ELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMSS   92 (293)
Q Consensus        21 ~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~~   92 (293)
                      ..++++++.+...++.+.. +|+=+++++...+-+.+...++++++++.+..+.+|..++++|+.+......
T Consensus       240 ~~sv~~f~~Nls~f~~ig~-tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~  310 (316)
T KOG1441|consen  240 LNSVLAFLLNLSAFLVIGR-TSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKL  310 (316)
T ss_pred             HHHHHHHHHHHHHHHHHcc-cCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhh
Confidence            3446778888899999996 9999999999999999999999999999999999999999999998876543

>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=85.25  E-value=17  Score=29.52  Aligned_cols=135  Identities=16%  Similarity=0.181  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCcccccccchH
Q psy348          116 SLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPS  195 (293)
Q Consensus       116 ~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (293)
                      .+..++.+.+-++-.++...+.++.+..+ +|.-..+.++..+...+..+. -+.+      ..+.+.  .   .... .
T Consensus         4 ~l~ll~~i~aG~~l~~Q~~iN~qL~~~~~-spl~As~isf~vGt~~L~~l~-l~~~------~~~~~a--~---~~~~-p   69 (150)
T COG3238           4 YLYLLFAILAGALLPLQAAINGRLARYLG-SPLLASLISFLVGTVLLLILL-LIKQ------GHPGLA--A---VASA-P   69 (150)
T ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHH-HHhc------CCCchh--h---ccCC-c
Confidence            45667777777777888888888877665 454444555555543332211 0011      111111  0   0011 1


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhh--heeec---CcccccchhhhhHHHHHHHH
Q psy348          196 IVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFS--IVYFQ---NEFTLYHWTGTALVFVGTVI  266 (293)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils--~~~fg---e~lt~~~~iG~~lv~~Gv~~  266 (293)
                      .|.++-. .+++ +.....-....+.++.+........+++.-++-  +=+||   .+++...++|++++++|+.+
T Consensus        70 wW~~~GG-~lGa-~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~  143 (150)
T COG3238          70 WWAWIGG-LLGA-IFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILL  143 (150)
T ss_pred             hHHHHcc-chhh-hhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHH
Confidence            2333221 1222 222233346789999888887777766655433  22333   39999999999999999644

>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses

Probab=84.53  E-value=0.88  Score=31.38  Aligned_cols=20  Identities=5%  Similarity=0.137  Sum_probs=16.2

Q ss_pred             chhhhhHHHHHHHHHhhhcc
Q psy348          253 HWTGTALVFVGTVIFTQLVP  272 (293)
Q Consensus       253 ~~iG~~lv~~Gv~~Y~~~~~  272 (293)
                      -.++++.++.|..+|..+-.
T Consensus         6 iLi~ICVaii~lIlY~iYnr   25 (68)
T PF05961_consen    6 ILIIICVAIIGLILYGIYNR   25 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHhc
Confidence            46789999999999996533

A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].

>KOG1581|consensus

Probab=84.48  E-value=1.2  Score=40.33  Aligned_cols=76  Identities=8%  Similarity=0.138  Sum_probs=60.8

Q ss_pred             ccch--hHHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhhee
Q psy348           12 PRHI--NQHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICT   88 (293)
Q Consensus        12 ~~~~--~~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~   88 (293)
                      .+|+  ++|.+..+.+-..+..+-++-++- --.=+.+++..+.-++.++++.+.++.+.+..||+++++...|+..=.
T Consensus       235 ~~hp~~~~Di~l~s~~gavGQ~FI~~TI~~-FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~  312 (327)
T KOG1581|consen  235 KEHPDVAFDILLYSTCGAVGQLFIFYTIER-FGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEI  312 (327)
T ss_pred             HcChhHHHHHHHHHHhhhhhhheehhhHhh-cccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHH
Confidence            4444  999999999988888877777664 344445566667788999999999999999999999999888886543

>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]

Probab=83.55  E-value=1.6  Score=38.40  Aligned_cols=71  Identities=11%  Similarity=0.045  Sum_probs=46.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHH-HHHHHHHhhhheeecCcccccch----hhhhHHHHHHHH
Q psy348          196 IVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVIT-LRKFVSLLFSIVYFQNEFTLYHW----TGTALVFVGTVI  266 (293)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~-l~~v~t~ils~~~fge~lt~~~~----iG~~lv~~Gv~~  266 (293)
                      .+..-+.++..-.+++...|.+++..+...++..++ .+-+.+.+.|++.|||=-+..|.    +..++++.|+++
T Consensus        58 ~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~l  133 (288)
T COG4975          58 IFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYL  133 (288)
T ss_pred             hHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheE
Confidence            343333333332367777778888877777665554 45566779999999995555543    456677888744

>KOG2922|consensus

Probab=82.13  E-value=0.62  Score=42.36  Aligned_cols=131  Identities=14%  Similarity=0.114  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCCcchhhhhhhhhHHHHHHhhhHHHHHHHHHhcCCCCCCCcccccccchH
Q psy348          116 SLGITLLTVALFISARMGIYQEVLYKTHGKYPYEALYYTHLLPLPAFAFLYKNLYEHWLIAVNSTPLPLPSYLSFISIPS  195 (293)
Q Consensus       116 ~~G~~l~l~s~l~~a~~~v~~~~l~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (293)
                      ..|..+.+.+.+.-+...+..|+-++|.+.....  .              +          +++ +  ++    ...+.
T Consensus        20 ~~G~~LaissS~~Ig~sfilkKkgl~r~~~~~~r--a--------------~----------~gg-~--~y----l~~~~   66 (335)
T KOG2922|consen   20 IIGLVLAISSSIFIGSSFILKKKGLKRAGASGLR--A--------------G----------EGG-Y--GY----LKEPL   66 (335)
T ss_pred             eeeeeehhhccEEEeeehhhhHHHHHHHhhhccc--c--------------c----------CCC-c--ch----hhhHH
Confidence            7888888888888787778887777665431000  0              0          000 0  11    12345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHHhhhccccc
Q psy348          196 IVFYLLGNVLTQYLCISSVYYLTTECNSLTVTLVITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFTQLVPSLM  275 (293)
Q Consensus       196 ~~~~~~~~~~~~~l~~~~~~~~i~~~sa~~~sv~~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y~~~~~k~~  275 (293)
                      +|..+++..++- ++|   |.+-.--+++..+..+.+.-+.+.+++..+++|+++....+|.++++.|.  +.....-++
T Consensus        67 Ww~G~ltm~vGe-i~N---FaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gs--t~iV~haP~  140 (335)
T KOG2922|consen   67 WWAGMLTMIVGE-IAN---FAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGS--TTIVIHAPK  140 (335)
T ss_pred             HHHHHHHHHHHh-Hhh---HHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEeccc--EEEEEecCc
Confidence            566666655544 233   33456667778888888888999999999999999999999999999998  446666656


Q ss_pred             cccccccchh
Q psy348          276 GMFGEKTKKS  285 (293)
Q Consensus       276 ~~~~~~~~~~  285 (293)
                      +.+.+..++.
T Consensus       141 e~~i~t~~el  150 (335)
T KOG2922|consen  141 EQEIESVEEV  150 (335)
T ss_pred             ccccccHHHH
Confidence            6555555544

>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]

Probab=81.17  E-value=2.8  Score=36.43  Aligned_cols=74  Identities=8%  Similarity=0.067  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhcccchhhHHHHHhhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeecc
Q psy348           17 QHQIELVVMFFITNVCNNYAFDFNIAMPLHMIFRAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMS   91 (293)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~   91 (293)
                      -..++-+++-++-.+++-+|++- +|..++.++.++.-.+..+.+.+++++..++..+.++++-.+..++...+.
T Consensus       225 ~am~ISgl~svgiSy~saWcvrV-tSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavak  298 (309)
T COG5070         225 MAMFISGLCSVGISYCSAWCVRV-TSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAK  298 (309)
T ss_pred             HHHHHHHHHHhhhhhccceeEee-hhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            34556666777778999999998 899999999999999999999999999999999999999887777776554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	293
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.59
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	98.26
2i68_A	137	Protein EMRE; transmembrane protein, small-multidr	98.12
3b5d_A	110	Multidrug transporter EMRE; helical membrane prote	97.94

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.59  E-value=5.6e-08  Score=76.94  Aligned_cols=60  Identities=13%  Similarity=0.095  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHhhcchhHHHHH-HHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHHh
Q psy348          209 LCISSVYYLTTECNSLTVTLV-ITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFT  268 (293)
Q Consensus       209 l~~~~~~~~i~~~sa~~~sv~-~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y~  268 (293)
                      ++...+..++++.++..+..+ ..+.|+++.++|+++|||++|+.+++|+++++.|+++.+
T Consensus        42 ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~  102 (137)
T 2i68_A           42 ASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIIN  102 (137)
T ss_dssp             HHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            444566678999999998888 899999999999999999999999999999999998755

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=98.26  E-value=2e-06  Score=65.39  Aligned_cols=72  Identities=8%  Similarity=0.225  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHHhhhhhhcccchhhHHHHH-hhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeecc
Q psy348           19 QIELVVMFFITNVCNNYAFDFNIAMPLHMIF-RAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMS   91 (293)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~-~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~   91 (293)
                      .+...+++..+..+...++++ +|.+..-.+ +++.|+.+.+++++++||++++.+++++.++++|+.+....+
T Consensus        33 ~~~~~~~~~~~~~~~~~al~~-~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~  105 (110)
T 3b5d_A           33 SVGTIICYCASFWLLAQTLAY-IPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-CChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            344455688889999999998 999998655 899999999999999999999999999999999999987654

>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}

Probab=98.12  E-value=1.6e-06  Score=68.52  Aligned_cols=71  Identities=8%  Similarity=0.228  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHHhhhhhhcccchhhHHHHH-hhchhHHHHHHHHHHhccccChhhhhHHhhhhhhhhheeecc
Q psy348           20 IELVVMFFITNVCNNYAFDFNIAMPLHMIF-RAGSLITNMIMGIIILKKVYTLDKYVSVIMITLGIIICTIMS   91 (293)
Q Consensus        20 ~~~~~~~~~~~~~~~~~L~y~vs~s~~~~~-~~~~pi~t~l~~~l~l~~~~~~~~~~~i~l~~~Gv~i~~~~~   91 (293)
                      +...+++.++.++.+.++++ ++.+....+ .++.|++++++++++++|+++..+++|++++++|+.+....+
T Consensus        34 ~l~i~~~~ls~~l~~~alk~-i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~  105 (137)
T 2i68_A           34 VGTIICYCASFWLLAQTLAY-IPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS  105 (137)
T ss_dssp             CHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHHHHHHHHHh-CChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence            44455688889999999998 999977655 999999999999999999999999999999999999987544

>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*

Probab=97.94  E-value=2.6e-05  Score=59.17  Aligned_cols=60  Identities=13%  Similarity=0.095  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHhhcchhHHHHH-HHHHHHHHHhhhheeecCcccccchhhhhHHHHHHHHHh
Q psy348          209 LCISSVYYLTTECNSLTVTLV-ITLRKFVSLLFSIVYFQNEFTLYHWTGTALVFVGTVIFT  268 (293)
Q Consensus       209 l~~~~~~~~i~~~sa~~~sv~-~~l~~v~t~ils~~~fge~lt~~~~iG~~lv~~Gv~~Y~  268 (293)
                      ++...+...+++.+..++... ..+.|+.+.++|+++|||++|+.+++|+++++.|++..+
T Consensus        42 ~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~  102 (110)
T 3b5d_A           42 ASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIIN  102 (110)
T ss_pred             HHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHh
Confidence            333455568999999998777 899999999999999999999999999999999997744

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00