Psyllid ID: psy3521

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------
Protein Sequence
MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQLIHIPTYLSNLPHY
Secondary Structure (PSIPRED)
ccccccccccccccccEEccccccccHHHHHHHHHHHHHHHHHHcHHcccccccHHHHHccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHccccccEEccccccEEEEccHHccccccc
Coil and Loop (DISEMBL)
mvgakeaikdkeppkwtrkknlpevtqSWHNYSVKKVVQDFQQSVLqvsetpfdeksilnlppshyefpngyhqlihiptylsnlphy
Flexible Loop (DISEMBL)
mvgakeaikdkeppkwtrkknlpevtqSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQLIHIPTYLSNLPHY
Low Complexity Region (SEG)
MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQLIHIPTYLSNLPHY
Disordered region (IsUnstruct)
*************************TQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQLIHIPTYLS*****
Disordered Region (DISOPRED)
***A********PP*WTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQLIHIPTYLSNL**Y
Disordered Region (DISEMBL)
**********KEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQLIHIPTYLSNLPHY
Disordered Region (DISPRO)
************PPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQLIHIPTYLSNLPHY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQLIHIPTYLSNLPHY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	88	2.2.26 [Sep-21-2011]
O96019	429	Actin-like protein 6A OS=	yes	N/A	0.829	0.170	0.534	2e-20
Q9Z2N8	429	Actin-like protein 6A OS=	yes	N/A	0.829	0.170	0.534	2e-20
Q4R333	429	Actin-like protein 6A OS=	N/A	N/A	0.829	0.170	0.534	2e-20
P86173	426	Actin-like protein 6B OS=	no	N/A	0.829	0.171	0.520	1e-19
Q99MR0	426	Actin-like protein 6B OS=	no	N/A	0.829	0.171	0.520	1e-19
A4FUX8	426	Actin-like protein 6B OS=	no	N/A	0.829	0.171	0.520	1e-19
O94805	426	Actin-like protein 6B OS=	no	N/A	0.829	0.171	0.520	1e-19
Q84M92	441	Actin-related protein 4 O	yes	N/A	0.579	0.115	0.352	1e-05
Q6ZJW9	443	Actin-related protein 4 O	yes	N/A	0.579	0.115	0.372	1e-05
A2YR10	443	Actin-related protein 4 O	N/A	N/A	0.579	0.115	0.372	1e-05

>sp|O96019|ACL6A_HUMAN Actin-like protein 6A OS=Homo sapiens GN=ACTL6A PE=1 SV=1

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/73 (53%), Positives = 54/73 (73%)

Query: 1   MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILN 60
           M+ +KEA+++  P  W RK+ LP+VT+SWHNY    V+QDFQ SVLQVS++ +DE+    
Sbjct: 222 MIASKEAVREGSPANWKRKEKLPQVTRSWHNYMCNCVIQDFQASVLQVSDSTYDEQVAAQ 281

Query: 61  LPPSHYEFPNGYH 73
           +P  HYEFPNGY+
Sbjct: 282 MPTVHYEFPNGYN 294

Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). Required for maximal ATPase activity of SMARCA4/BRG1/BAF190A and for association of the SMARCA4/BRG1/BAF190A containing remodeling complex BAF with chromatin/nuclear matrix. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and is required for the proliferation of neural progenitors. During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth (By similarity). Component of the NuA4 histone acetyltransferase (HAT) complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histones H4 and H2A. This modification may both alter nucleosome - DNA interactions and promote interaction of the modified histones with other proteins which positively regulate transcription. This complex may be required for the activation of transcriptional programs associated with oncogene and proto-oncogene mediated growth induction, tumor suppressor mediated growth arrest and replicative senescence, apoptosis, and DNA repair. NuA4 may also play a direct role in DNA repair when recruited to sites of DNA damage. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene. Putative core component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.
Homo sapiens (taxid: 9606)

>sp|Q9Z2N8|ACL6A_MOUSE Actin-like protein 6A OS=Mus musculus GN=Actl6a PE=1 SV=2

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/73 (53%), Positives = 54/73 (73%)

Query: 1   MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILN 60
           M+ +KEA+++  P  W RK+ LP+VT+SWHNY    V+QDFQ SVLQVS++ +DE+    
Sbjct: 222 MIASKEAVREGSPANWKRKEKLPQVTRSWHNYMCNCVIQDFQASVLQVSDSTYDEQVAAQ 281

Query: 61  LPPSHYEFPNGYH 73
           +P  HYEFPNGY+
Sbjct: 282 MPTVHYEFPNGYN 294

Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). Required for maximal ATPase activity of SMARCA4/BRG1/BAF190A and for association of the SMARCA4/BRG1/BAF190A containing remodeling complex BAF with chromatin/nuclear matrix. Component of the NuA4 histone acetyltransferase (HAT) complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histones H4 and H2A. This modification may both alter nucleosome - DNA interactions and promote interaction of the modified histones with other proteins which positively regulate transcription. This complex may be required for the activation of transcriptional programs associated with oncogene and proto-oncogene mediated growth induction, tumor suppressor mediated growth arrest and replicative senescence, apoptosis, and DNA repair. NuA4 may also play a direct role in DNA repair when recruited to sites of DNA damage. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene (By similarity). Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and is required for the proliferation of neural progenitors. During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. Proposed core component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.

Mus musculus (taxid: 10090)

>sp|Q4R333|ACL6A_MACFA Actin-like protein 6A OS=Macaca fascicularis GN=ACTL6A PE=2 SV=1

 Score = 97.4 bits (241), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/73 (53%), Positives = 54/73 (73%)

Query: 1   MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILN 60
           M+ +KEA+++  P  W RK+ LP+VT+SWHNY    V+QDFQ SVLQVS++ +DE+    
Sbjct: 222 MIASKEAVREGSPANWKRKEKLPQVTRSWHNYMCNCVIQDFQASVLQVSDSTYDEQVAAQ 281

Query: 61  LPPSHYEFPNGYH 73
           +P  HYEFPNGY+
Sbjct: 282 MPTVHYEFPNGYN 294

Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). Required for maximal ATPase activity of SMARCA4/BRG1/BAF190A and for association of the SMARCA4/BRG1/BAF190A containing remodeling complex BAF with chromatin/nuclear matrix. Component of the NuA4 histone acetyltransferase (HAT) complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histones H4 and H2A. This modification may both alter nucleosome - DNA interactions and promote interaction of the modified histones with other proteins which positively regulate transcription. This complex may be required for the activation of transcriptional programs associated with oncogene and proto-oncogene mediated growth induction, tumor suppressor mediated growth arrest and replicative senescence, apoptosis, and DNA repair. NuA4 may also play a direct role in DNA repair when recruited to sites of DNA damage. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene. Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and is required for the proliferation of neural progenitors. During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. Proposed core component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair.

Macaca fascicularis (taxid: 9541)

>sp|P86173|ACL6B_RAT Actin-like protein 6B OS=Rattus norvegicus GN=Actl6b PE=1 SV=2

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 55/73 (75%)

Query: 1   MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILN 60
           M+ AKE +++  PP W +K+ LP+V++SWHNY   +V+QDFQ SVLQVS++P+DE+    
Sbjct: 219 MIAAKEPVREGAPPNWKKKEKLPQVSKSWHNYMCNEVIQDFQASVLQVSDSPYDEQVAAQ 278

Query: 61  LPPSHYEFPNGYH 73
           +P  HYE PNGY+
Sbjct: 279 MPTVHYEMPNGYN 291

Belongs to the chromatin remodeling brain-specific BAF (bBAF) complex, as such plays a role in remodeling mononucleosomes in an ATP-dependent fashion. Belongs to the neuron-specific chromatin remodeling complex (nBAF complex) and is required for postmitotic neural development and dendritic outgrowth. During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. ACTL6B/BAF53B is not essential for assembly of the nBAF complex but is required for targeting the complex and CREST to the promoter of genes essential for dendritic growth.

Rattus norvegicus (taxid: 10116)

>sp|Q99MR0|ACL6B_MOUSE Actin-like protein 6B OS=Mus musculus GN=Actl6b PE=1 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 55/73 (75%)

Query: 1   MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILN 60
           M+ AKE +++  PP W +K+ LP+V++SWHNY   +V+QDFQ SVLQVS++P+DE+    
Sbjct: 219 MIAAKEPVREGAPPNWKKKEKLPQVSKSWHNYMCNEVIQDFQASVLQVSDSPYDEQVAAQ 278

Query: 61  LPPSHYEFPNGYH 73
           +P  HYE PNGY+
Sbjct: 279 MPTVHYEMPNGYN 291

Belongs to the chromatin remodeling brain-specific BAF (bBAF) complex, as such plays a role in remodeling mononucleosomes in an ATP-dependent fashion. Belongs to the neuron-specific chromatin remodeling complex (nBAF complex) and is required for postmitotic neural development and dendritic outgrowth. During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. ACTL6B/BAF53B is not essential for assembly of the nBAF complex but is required for targeting the complex and CREST to the promoter of genes essential for dendritic growth.

Mus musculus (taxid: 10090)

>sp|A4FUX8|ACL6B_BOVIN Actin-like protein 6B OS=Bos taurus GN=ACTL6B PE=2 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 55/73 (75%)

Query: 1   MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILN 60
           M+ AKE +++  PP W +K+ LP+V++SWHNY   +V+QDFQ SVLQVS++P+DE+    
Sbjct: 219 MIAAKEPVREGAPPNWKKKEKLPQVSKSWHNYMCNEVIQDFQASVLQVSDSPYDEQVAAQ 278

Query: 61  LPPSHYEFPNGYH 73
           +P  HYE PNGY+
Sbjct: 279 MPTVHYEMPNGYN 291

Belongs to the chromatin remodeling brain-specific BAF (bBAF) complex, as such plays a role in remodeling mononucleosomes in an ATP-dependent fashion. Belongs to the neuron-specific chromatin remodeling complex (nBAF complex) and is required for postmitotic neural development and dendritic outgrowth. During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. ACTL6B/BAF53B is not essential for assembly of the nBAF complex but is required for targeting the complex and CREST to the promoter of genes essential for dendritic growth.

Bos taurus (taxid: 9913)

>sp|O94805|ACL6B_HUMAN Actin-like protein 6B OS=Homo sapiens GN=ACTL6B PE=1 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 38/73 (52%), Positives = 55/73 (75%)

Query: 1   MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILN 60
           M+ AKE +++  PP W +K+ LP+V++SWHNY   +V+QDFQ SVLQVS++P+DE+    
Sbjct: 219 MIAAKEPVREGAPPNWKKKEKLPQVSKSWHNYMCNEVIQDFQASVLQVSDSPYDEQVAAQ 278

Query: 61  LPPSHYEFPNGYH 73
           +P  HYE PNGY+
Sbjct: 279 MPTVHYEMPNGYN 291

Belongs to the chromatin remodeling brain-specific BAF (bBAF) complex, as such plays a role in remodeling mononucleosomes in an ATP-dependent fashion. Belongs to the neuron-specific chromatin remodeling complex (nBAF complex) and is required for postmitotic neural development and dendritic outgrowth. During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth. ACTL6B/BAF53B is not essential for assembly of the nBAF complex but is required for targeting the complex and CREST to the promoter of genes essential for dendritic growth.

Homo sapiens (taxid: 9606)

>sp|Q84M92|ARP4_ARATH Actin-related protein 4 OS=Arabidopsis thaliana GN=ARP4 PE=1 SV=1

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/51 (35%), Positives = 35/51 (68%)

Query: 21  NLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNG 71
           ++P+ T+S+  +  + +V D + S+ +V +TP+D+KS  N+P + YE P+G
Sbjct: 246 DIPDTTESYKLFCQRMIVGDIKDSICRVPDTPYDDKSYSNIPTTSYELPDG 296

Involved in several developmental processes including organization of plant organs, flowering time, anther development, flower senescence and fertility, probably by regulating the chromatin structure.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6ZJW9|ARP4_ORYSJ Actin-related protein 4 OS=Oryza sativa subsp. japonica GN=ARP4 PE=2 SV=1

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 33/51 (64%)

Query: 21  NLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNG 71
           +LP  T+S+  Y ++ +  D ++SV +V +T FDE +  N+P + YE P+G
Sbjct: 249 DLPNTTESYKLYCMRAIASDIKESVCRVPDTAFDEVAYANVPTTSYELPDG 299

Involved in several developmental processes including organization of plant organs, flowering time, anther development, flower senescence and fertility, probably by regulating the chromatin structure.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YR10|ARP4_ORYSI Actin-related protein 4 OS=Oryza sativa subsp. indica GN=ARP4 PE=2 SV=2

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 33/51 (64%)

Query: 21  NLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNG 71
           +LP  T+S+  Y ++ +  D ++SV +V +T FDE +  N+P + YE P+G
Sbjct: 249 DLPNTTESYKLYCMRAIASDIKESVCRVPDTAFDEVAYANVPTTSYELPDG 299

Involved in several developmental processes including organization of plant organs, flowering time, anther development, flower senescence and fertility, probably by regulating the chromatin structure.

Oryza sativa subsp. indica (taxid: 39946)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
242016697	438	conserved hypothetical protein [Pediculu	0.840	0.168	0.675	7e-25
321477239	429	hypothetical protein DAPPUDRAFT_192057 [	0.840	0.172	0.635	7e-25
383854559	440	PREDICTED: actin-like protein 6A-like [M	0.840	0.168	0.662	5e-24
332030233	440	Actin-like protein 6A [Acromyrmex echina	0.840	0.168	0.675	5e-24
66523552	440	PREDICTED: brahma associated protein 55k	0.840	0.168	0.662	6e-24
427793335	479	Putative actin, partial [Rhipicephalus p	0.840	0.154	0.648	7e-24
340724322	440	PREDICTED: actin-like protein 6A-like is	0.840	0.168	0.662	7e-24
427789617	431	Putative actin [Rhipicephalus pulchellus	0.840	0.171	0.648	9e-24
307202650	440	Actin-like protein 6A [Harpegnathos salt	0.840	0.168	0.648	1e-23
307168237	440	Actin-like protein 6A [Camponotus florid	0.840	0.168	0.648	1e-23

>gi|242016697|ref|XP_002428884.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212513652|gb|EEB16146.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score =  117 bits (294), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 50/74 (67%), Positives = 59/74 (79%)

Query: 1   MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILN 60
           M+G+KE +KDKE PKW +K NLPEV  SWHNY  K+VVQDFQ SVLQV+E P+DEK +  
Sbjct: 229 MIGSKEVVKDKEKPKWVKKSNLPEVRSSWHNYMTKRVVQDFQMSVLQVAENPYDEKQVST 288

Query: 61  LPPSHYEFPNGYHQ 74
           +P  HYEFPNGYHQ
Sbjct: 289 IPAVHYEFPNGYHQ 302

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321477239|gb|EFX88198.1| hypothetical protein DAPPUDRAFT_192057 [Daphnia pulex]

 Score =  117 bits (294), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 47/74 (63%), Positives = 62/74 (83%)

Query: 1   MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILN 60
           M+ AKEA+KD E PKWTRK NLPEVT+SWHNY +K+V++DFQ + LQV++ P+DE+++  
Sbjct: 223 MIAAKEAVKDFEKPKWTRKSNLPEVTKSWHNYMMKEVIRDFQSTALQVADAPYDEETVST 282

Query: 61  LPPSHYEFPNGYHQ 74
           +P  HYEFPNGYHQ
Sbjct: 283 IPMVHYEFPNGYHQ 296

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854559|ref|XP_003702788.1| PREDICTED: actin-like protein 6A-like [Megachile rotundata]

 Score =  115 bits (287), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 49/74 (66%), Positives = 60/74 (81%)

Query: 1   MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILN 60
           MVG+KE +KD E P+W +KK LPEVT+SWHNY VKK++QDFQ +VLQVSETP+DEK +  
Sbjct: 230 MVGSKEVVKDHEKPRWVKKKGLPEVTKSWHNYMVKKLIQDFQATVLQVSETPYDEKIVST 289

Query: 61  LPPSHYEFPNGYHQ 74
           +P   YEFP GYHQ
Sbjct: 290 IPAVQYEFPTGYHQ 303

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030233|gb|EGI70016.1| Actin-like protein 6A [Acromyrmex echinatior]

 Score =  114 bits (286), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 50/74 (67%), Positives = 60/74 (81%)

Query: 1   MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILN 60
           MVG+KE +KD + P+W +KK LPEVT+SWHNY VKKVVQDFQ +VLQVSETP+DEK +  
Sbjct: 230 MVGSKEVVKDHDKPRWIKKKGLPEVTKSWHNYMVKKVVQDFQATVLQVSETPYDEKIVST 289

Query: 61  LPPSHYEFPNGYHQ 74
           +P   YEFP GYHQ
Sbjct: 290 IPAVQYEFPTGYHQ 303

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66523552|ref|XP_625202.1| PREDICTED: brahma associated protein 55kd [Apis mellifera]

 Score =  114 bits (286), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 49/74 (66%), Positives = 60/74 (81%)

Query: 1   MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILN 60
           MVG+KE +KD E P+W +KK LPEVT+SWHNY VKK++QDFQ +VLQVSETP+DEK +  
Sbjct: 230 MVGSKEVVKDHEKPRWIKKKGLPEVTKSWHNYMVKKLIQDFQATVLQVSETPYDEKIVST 289

Query: 61  LPPSHYEFPNGYHQ 74
           +P   YEFP GYHQ
Sbjct: 290 IPAVQYEFPTGYHQ 303

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427793335|gb|JAA62119.1| Putative actin, partial [Rhipicephalus pulchellus]

 Score =  114 bits (285), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 48/74 (64%), Positives = 63/74 (85%)

Query: 1   MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILN 60
           M+  KEA+K+ E PKWTRK NLPEVT+SWHNY VK+V+QDFQ SVLQV ++P+D++++ N
Sbjct: 244 MLAGKEAVKEGETPKWTRKNNLPEVTKSWHNYMVKEVIQDFQSSVLQVLDSPYDKETVEN 303

Query: 61  LPPSHYEFPNGYHQ 74
           +P  HYEFPNGY+Q
Sbjct: 304 MPTVHYEFPNGYNQ 317

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340724322|ref|XP_003400531.1| PREDICTED: actin-like protein 6A-like isoform 1 [Bombus terrestris] gi|340724324|ref|XP_003400532.1| PREDICTED: actin-like protein 6A-like isoform 2 [Bombus terrestris]

 Score =  114 bits (285), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 49/74 (66%), Positives = 60/74 (81%)

Query: 1   MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILN 60
           MVG+KE +KD E P+W +KK LPEVT+SWHNY VKK++QDFQ +VLQVSETP+DEK +  
Sbjct: 230 MVGSKEVVKDHEKPRWVKKKGLPEVTKSWHNYMVKKLIQDFQATVLQVSETPYDEKIVST 289

Query: 61  LPPSHYEFPNGYHQ 74
           +P   YEFP GYHQ
Sbjct: 290 IPAVQYEFPAGYHQ 303

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427789617|gb|JAA60260.1| Putative actin [Rhipicephalus pulchellus]

 Score =  114 bits (284), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 48/74 (64%), Positives = 63/74 (85%)

Query: 1   MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILN 60
           M+  KEA+K+ E PKWTRK NLPEVT+SWHNY VK+V+QDFQ SVLQV ++P+D++++ N
Sbjct: 224 MLAGKEAVKEGEMPKWTRKNNLPEVTKSWHNYMVKEVIQDFQSSVLQVLDSPYDKETVEN 283

Query: 61  LPPSHYEFPNGYHQ 74
           +P  HYEFPNGY+Q
Sbjct: 284 MPTVHYEFPNGYNQ 297

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307202650|gb|EFN81970.1| Actin-like protein 6A [Harpegnathos saltator]

 Score =  114 bits (284), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 48/74 (64%), Positives = 60/74 (81%)

Query: 1   MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILN 60
           MVG+KE +KD + P+W +KK +PEVT+SWHNY VKKV+QDFQ +VLQVSETP+DEK +  
Sbjct: 230 MVGSKEVVKDHDKPRWVKKKGIPEVTKSWHNYMVKKVIQDFQATVLQVSETPYDEKIVST 289

Query: 61  LPPSHYEFPNGYHQ 74
           +P   YEFP GYHQ
Sbjct: 290 IPAVQYEFPTGYHQ 303

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307168237|gb|EFN61463.1| Actin-like protein 6A [Camponotus floridanus]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 48/74 (64%), Positives = 60/74 (81%)

Query: 1   MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILN 60
           MVG+KE +KD + P+W +KK LPEV++SWHNY VKKV+QDFQ +VLQVSETP+DEK +  
Sbjct: 230 MVGSKEVVKDHDKPRWVKKKGLPEVSKSWHNYMVKKVIQDFQATVLQVSETPYDEKIVST 289

Query: 61  LPPSHYEFPNGYHQ 74
           +P   YEFP GYHQ
Sbjct: 290 IPAVQYEFPTGYHQ 303

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	88
UNIPROTKB|A4FUX8	426	ACTL6B "Actin-like protein 6B"	0.829	0.171	0.520	1.4e-19
UNIPROTKB|E2RCX1	426	ACTL6B "Uncharacterized protei	0.829	0.171	0.520	1.4e-19
UNIPROTKB|O94805	426	ACTL6B "Actin-like protein 6B"	0.829	0.171	0.520	1.4e-19
UNIPROTKB|F2Z4Z7	426	ACTL6B "Uncharacterized protei	0.829	0.171	0.520	1.4e-19
MGI|MGI:1933548	426	Actl6b "actin-like 6B" [Mus mu	0.829	0.171	0.520	1.4e-19
RGD|1307763	426	Actl6b "actin-like 6B" [Rattus	0.829	0.171	0.520	1.4e-19
UNIPROTKB|E1BR36	379	ACTL6A "Uncharacterized protei	0.829	0.192	0.534	2.2e-19
UNIPROTKB|J9PAV6	387	ACTL6A "Uncharacterized protei	0.829	0.188	0.534	2.4e-19
UNIPROTKB|E1BS78	422	ACTL6A "Uncharacterized protei	0.829	0.172	0.534	3.7e-19
UNIPROTKB|A4IFJ8	429	ACTL6A "ACTL6A protein" [Bos t	0.829	0.170	0.534	3.9e-19

UNIPROTKB|A4FUX8 ACTL6B "Actin-like protein 6B" [Bos taurus (taxid:9913)]

 Score = 238 (88.8 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 38/73 (52%), Positives = 55/73 (75%)

Query:     1 MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILN 60
             M+ AKE +++  PP W +K+ LP+V++SWHNY   +V+QDFQ SVLQVS++P+DE+    
Sbjct:   219 MIAAKEPVREGAPPNWKKKEKLPQVSKSWHNYMCNEVIQDFQASVLQVSDSPYDEQVAAQ 278

Query:    61 LPPSHYEFPNGYH 73
             +P  HYE PNGY+
Sbjct:   279 MPTVHYEMPNGYN 291

GO:0071565 "nBAF complex" evidence=ISS

GO:0016514 "SWI/SNF complex" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E2RCX1 ACTL6B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 238 (88.8 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 38/73 (52%), Positives = 55/73 (75%)

Query:     1 MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILN 60
             M+ AKE +++  PP W +K+ LP+V++SWHNY   +V+QDFQ SVLQVS++P+DE+    
Sbjct:   219 MIAAKEPVREGAPPNWKKKEKLPQVSKSWHNYMCNEVIQDFQASVLQVSDSPYDEQVAAQ 278

Query:    61 LPPSHYEFPNGYH 73
             +P  HYE PNGY+
Sbjct:   279 MPTVHYEMPNGYN 291

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|O94805 ACTL6B "Actin-like protein 6B" [Homo sapiens (taxid:9606)]

 Score = 238 (88.8 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 38/73 (52%), Positives = 55/73 (75%)

Query:     1 MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILN 60
             M+ AKE +++  PP W +K+ LP+V++SWHNY   +V+QDFQ SVLQVS++P+DE+    
Sbjct:   219 MIAAKEPVREGAPPNWKKKEKLPQVSKSWHNYMCNEVIQDFQASVLQVSDSPYDEQVAAQ 278

Query:    61 LPPSHYEFPNGYH 73
             +P  HYE PNGY+
Sbjct:   279 MPTVHYEMPNGYN 291

GO:0005524 "ATP binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0006325 "chromatin organization" evidence=NAS

GO:0016514 "SWI/SNF complex" evidence=ISS;IDA

GO:0005634 "nucleus" evidence=IDA

GO:0071565 "nBAF complex" evidence=ISS

GO:0005200 "structural constituent of cytoskeleton" evidence=TAS

GO:0003713 "transcription coactivator activity" evidence=NAS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=NAS

GO:0006338 "chromatin remodeling" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F2Z4Z7 ACTL6B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 238 (88.8 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 38/73 (52%), Positives = 55/73 (75%)

Query:     1 MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILN 60
             M+ AKE +++  PP W +K+ LP+V++SWHNY   +V+QDFQ SVLQVS++P+DE+    
Sbjct:   219 MIAAKEPVREGAPPNWKKKEKLPQVSKSWHNYMCNEVIQDFQASVLQVSDSPYDEQVAAQ 278

Query:    61 LPPSHYEFPNGYH 73
             +P  HYE PNGY+
Sbjct:   279 MPTVHYEMPNGYN 291

GO:0071565 "nBAF complex" evidence=IEA

GO:0016514 "SWI/SNF complex" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

MGI|MGI:1933548 Actl6b "actin-like 6B" [Mus musculus (taxid:10090)]

 Score = 238 (88.8 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 38/73 (52%), Positives = 55/73 (75%)

Query:     1 MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILN 60
             M+ AKE +++  PP W +K+ LP+V++SWHNY   +V+QDFQ SVLQVS++P+DE+    
Sbjct:   219 MIAAKEPVREGAPPNWKKKEKLPQVSKSWHNYMCNEVIQDFQASVLQVSDSPYDEQVAAQ 278

Query:    61 LPPSHYEFPNGYH 73
             +P  HYE PNGY+
Sbjct:   279 MPTVHYEMPNGYN 291

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0006333 "chromatin assembly or disassembly" evidence=IC

GO:0006338 "chromatin remodeling" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007399 "nervous system development" evidence=IMP

GO:0016514 "SWI/SNF complex" evidence=ISO;IDA

GO:0016568 "chromatin modification" evidence=IEA

GO:0071565 "nBAF complex" evidence=IDA

RGD|1307763 Actl6b "actin-like 6B" [Rattus norvegicus (taxid:10116)]

 Score = 238 (88.8 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 38/73 (52%), Positives = 55/73 (75%)

Query:     1 MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILN 60
             M+ AKE +++  PP W +K+ LP+V++SWHNY   +V+QDFQ SVLQVS++P+DE+    
Sbjct:   219 MIAAKEPVREGAPPNWKKKEKLPQVSKSWHNYMCNEVIQDFQASVLQVSDSPYDEQVAAQ 278

Query:    61 LPPSHYEFPNGYH 73
             +P  HYE PNGY+
Sbjct:   279 MPTVHYEMPNGYN 291

GO:0005524 "ATP binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0016514 "SWI/SNF complex" evidence=IEA

GO:0071565 "nBAF complex" evidence=ISS

UNIPROTKB|E1BR36 ACTL6A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 234 (87.4 bits), Expect = 2.2e-19, P = 2.2e-19
 Identities = 39/73 (53%), Positives = 54/73 (73%)

Query:     1 MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILN 60
             M+ +KEA+++  P  W RK+ LP+VT+SWHNY    V+QDFQ SVLQVS++ +DE+    
Sbjct:   172 MIASKEAVREGSPANWKRKEKLPQVTRSWHNYMCNCVIQDFQASVLQVSDSTYDEQVAAQ 231

Query:    61 LPPSHYEFPNGYH 73
             +P  HYEFPNGY+
Sbjct:   232 MPTVHYEFPNGYN 244

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|J9PAV6 ACTL6A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 234 (87.4 bits), Expect = 2.4e-19, P = 2.4e-19
 Identities = 39/73 (53%), Positives = 54/73 (73%)

Query:     1 MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILN 60
             M+ +KEA+++  P  W RK+ LP+VT+SWHNY    V+QDFQ SVLQVS++ +DE+    
Sbjct:   180 MIASKEAVREGSPANWKRKEKLPQVTRSWHNYMCNCVIQDFQASVLQVSDSTYDEQVAAQ 239

Query:    61 LPPSHYEFPNGYH 73
             +P  HYEFPNGY+
Sbjct:   240 MPTVHYEFPNGYN 252

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|E1BS78 ACTL6A "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 234 (87.4 bits), Expect = 3.7e-19, P = 3.7e-19
 Identities = 39/73 (53%), Positives = 54/73 (73%)

Query:     1 MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILN 60
             M+ +KEA+++  P  W RK+ LP+VT+SWHNY    V+QDFQ SVLQVS++ +DE+    
Sbjct:   215 MIASKEAVREGSPANWKRKEKLPQVTRSWHNYMCNCVIQDFQASVLQVSDSTYDEQVAAQ 274

Query:    61 LPPSHYEFPNGYH 73
             +P  HYEFPNGY+
Sbjct:   275 MPTVHYEFPNGYN 287

GO:0005524 "ATP binding" evidence=IEA

GO:0003407 "neural retina development" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0016514 "SWI/SNF complex" evidence=IEA

GO:0031011 "Ino80 complex" evidence=IEA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IEA

GO:0043967 "histone H4 acetylation" evidence=IEA

GO:0043968 "histone H2A acetylation" evidence=IEA

GO:0071564 "npBAF complex" evidence=IEA

UNIPROTKB|A4IFJ8 ACTL6A "ACTL6A protein" [Bos taurus (taxid:9913)]

 Score = 234 (87.4 bits), Expect = 3.9e-19, P = 3.9e-19
 Identities = 39/73 (53%), Positives = 54/73 (73%)

Query:     1 MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILN 60
             M+ +KEA+++  P  W RK+ LP+VT+SWHNY    V+QDFQ SVLQVS++ +DE+    
Sbjct:   222 MIASKEAVREGSPANWKRKEKLPQVTRSWHNYMCNCVIQDFQASVLQVSDSTYDEQVAAQ 281

Query:    61 LPPSHYEFPNGYH 73
             +P  HYEFPNGY+
Sbjct:   282 MPTVHYEFPNGYN 294

GO:0071564 "npBAF complex" evidence=IEA

GO:0043968 "histone H2A acetylation" evidence=IEA

GO:0043967 "histone H4 acetylation" evidence=IEA

GO:0035267 "NuA4 histone acetyltransferase complex" evidence=IEA

GO:0031011 "Ino80 complex" evidence=IEA

GO:0016514 "SWI/SNF complex" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0006338 "chromatin remodeling" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003407 "neural retina development" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Z2N8	ACL6A_MOUSE	No assigned EC number	0.5342	0.8295	0.1701	yes	N/A
O96019	ACL6A_HUMAN	No assigned EC number	0.5342	0.8295	0.1701	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	88
pfam00022	367	pfam00022, Actin, Actin	2e-10

>gnl|CDD|200935 pfam00022, Actin, Actin

 Score = 54.9 bits (133), Expect = 2e-10
 Identities = 20/59 (33%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 19  KKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPF-DEKSILNLPPSHYEFPNGYHQLI 76
           +K L   T S++ Y+ ++VV+D ++S+  VS+ PF D  +  + P   YE P+GY  ++
Sbjct: 183 RKLLSSRTYSFNTYAEEEVVRDIKESLCYVSDDPFGDTAASSSPPTVSYELPDGYVIIL 241

Length = 367

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	88
KOG0679|consensus	426		99.63
PTZ00466	380	actin-like protein; Provisional	99.24
PTZ00452	375	actin; Provisional	99.23
KOG0677|consensus	389		99.21
KOG0676|consensus	372		99.2
PTZ00281	376	actin; Provisional	99.13
PTZ00004	378	actin-2; Provisional	99.07
PF00022	393	Actin: Actin; InterPro: IPR004000 Actin [, ] is a	98.8
cd00012	371	ACTIN Actin; An ubiquitous protein involved in the	98.55
smart00268	373	ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarki	98.54
PTZ00280	414	Actin-related protein 3; Provisional	98.3
KOG0680|consensus	400		98.15
COG5277	444	Actin and related proteins [Cytoskeleton]	96.38
KOG0678|consensus	415		92.17

>KOG0679|consensus

Probab=99.63  E-value=6.1e-17  Score=117.69  Aligned_cols=87  Identities=39%  Similarity=0.749  Sum_probs=82.0

Q ss_pred             CCcccccCCCCCCCcceeccCCCCCCcccccchHHHHHHHHhhhcccccCCchhhhhhcCCCCceEEcCCCcEEEE----
Q psy3521           1 MVGAKEAIKDKEPPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQLI----   76 (88)
Q Consensus         1 ~i~~k~~v~~~~~~~~~~~~~~~~~~~s~~~~~~~~iv~~iKe~~c~V~~~~~~~~~~~~~~~~~yeLPDG~~i~l----   76 (88)
                      +||+|++|+.|.++.+.++...++.+.||+.|+..++++++|+++|.|++.+++++.+.+.+.+.||||||++..+    
T Consensus       211 ~ia~k~~v~~g~~an~~~~~~~~d~tes~~~y~~~~v~~e~ke~v~qv~dtp~de~~~~~i~~~~~efP~g~~~~~G~er  290 (426)
T KOG0679|consen  211 NIASKEPVREGYPANAVLRVSIPDLTESYHNYMEQRVYQEFKESVLQVSDTPFDEEVAAQIPTKHFEFPDGYTLDFGAER  290 (426)
T ss_pred             HhhhcccccccCcchhhhcCChhHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccccccCCCccccCCCCcccccCcce
Confidence            4899999999999999999888999999999999999999999999999999999988889999999999999888    


Q ss_pred             -EecccCCCCCC
Q psy3521          77 -HIPTYLSNLPH   87 (88)
Q Consensus        77 -~~pE~LF~P~~   87 (88)
                       ++||.||+|+.
T Consensus       291 ~ripe~lF~Ps~  302 (426)
T KOG0679|consen  291 FRIPEYLFKPSL  302 (426)
T ss_pred             eecchhhcCcch
Confidence             99999999963

>PTZ00466 actin-like protein; Provisional

Probab=99.24  E-value=1.4e-11  Score=90.05  Aligned_cols=64  Identities=23%  Similarity=0.263  Sum_probs=49.7

Q ss_pred             CCCcccccchHHHHHHHHhhhcccccCCchhhhhh--cCCCCceEEcCCCcEEEE-----EecccCCCCCC
Q psy3521          24 EVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSI--LNLPPSHYEFPNGYHQLI-----HIPTYLSNLPH   87 (88)
Q Consensus        24 ~~~~s~~~~~~~~iv~~iKe~~c~V~~~~~~~~~~--~~~~~~~yeLPDG~~i~l-----~~pE~LF~P~~   87 (88)
                      ..+.+|......+++++|||++|||+.+...+...  .....+.|+||||+.|.+     +|||+||+|+.
T Consensus       201 ~~~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~~~~~~~~~~~~y~LPdg~~i~l~~er~~~~E~LF~P~~  271 (380)
T PTZ00466        201 KNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEKNSSEKALTTLPYILPDGSQILIGSERYRAPEVLFNPSI  271 (380)
T ss_pred             hcCCCCCcHHHHHHHHHHHHhCeEecCChHHHHhhccccccceeEECCCCcEEEEchHHhcCcccccCccc
Confidence            45556777778899999999999999884332221  123357899999999999     99999999974

>PTZ00452 actin; Provisional

Probab=99.23  E-value=1.3e-11  Score=89.96  Aligned_cols=64  Identities=22%  Similarity=0.252  Sum_probs=49.2

Q ss_pred             CCCcccccchHHHHHHHHhhhcccccCCchhhhh-h--cCCCCceEEcCCCcEEEE-----EecccCCCCCC
Q psy3521          24 EVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKS-I--LNLPPSHYEFPNGYHQLI-----HIPTYLSNLPH   87 (88)
Q Consensus        24 ~~~~s~~~~~~~~iv~~iKe~~c~V~~~~~~~~~-~--~~~~~~~yeLPDG~~i~l-----~~pE~LF~P~~   87 (88)
                      ..+.++....+.+++++|||++|||+.+..++.. .  .....+.|+||||+.|.+     +|||+||+|+.
T Consensus       195 ~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~~~~~~~~~~~~~y~LPDg~~i~l~~er~~~~E~LF~P~~  266 (375)
T PTZ00452        195 ELGYSLTEPHQRIIVKNIKERLCYTALDPQDEKRIYKESNSQDSPYKLPDGNILTIKSQKFRCSEILFQPKL  266 (375)
T ss_pred             hcCCCCCCHHHHHHHHHHHHHhccccCcHHHHHHHhhccCCcCceEECCCCCEEEeehHHhcCcccccChhh
Confidence            4556666666788999999999999988433221 1  123457899999999999     99999999964

>KOG0677|consensus

Probab=99.21  E-value=1e-11  Score=87.78  Aligned_cols=64  Identities=13%  Similarity=0.125  Sum_probs=52.2

Q ss_pred             CCCCcccccchHHHHHHHHhhhcccccCCchhhhh-h--cCCCCceEEcCCCcEEEE-----EecccCCCCC
Q psy3521          23 PEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKS-I--LNLPPSHYEFPNGYHQLI-----HIPTYLSNLP   86 (88)
Q Consensus        23 ~~~~~s~~~~~~~~iv~~iKe~~c~V~~~~~~~~~-~--~~~~~~~yeLPDG~~i~l-----~~pE~LF~P~   86 (88)
                      ...|+.|...++.+.+|+|||++|||+-|...++. +  -..--++|+||||..|.+     .+||.||+|.
T Consensus       195 l~rGYafN~tADFETVR~iKEKLCYisYd~e~e~kLalETTvLv~~YtLPDGRvIkvG~ERFeAPE~LFqP~  266 (389)
T KOG0677|consen  195 LRRGYAFNHTADFETVREIKEKLCYISYDLELEQKLALETTVLVESYTLPDGRVIKVGGERFEAPEALFQPH  266 (389)
T ss_pred             HhhccccccccchHHHHHHHhhheeEeechhhhhHhhhhheeeeeeeecCCCcEEEecceeccCchhhcCcc
Confidence            46788899999999999999999999977222222 1  124468999999999999     9999999995

>KOG0676|consensus

Probab=99.20  E-value=1.1e-11  Score=90.66  Aligned_cols=65  Identities=20%  Similarity=0.221  Sum_probs=52.2

Q ss_pred             CCCCcccccchHHHHHHHHhhhcccccCCchhhhhh---cCCCCceEEcCCCcEEEE-----EecccCCCCCC
Q psy3521          23 PEVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSI---LNLPPSHYEFPNGYHQLI-----HIPTYLSNLPH   87 (88)
Q Consensus        23 ~~~~~s~~~~~~~~iv~~iKe~~c~V~~~~~~~~~~---~~~~~~~yeLPDG~~i~l-----~~pE~LF~P~~   87 (88)
                      .+.+.++......+|+++|||++|||+.+..++...   .+....+|+||||+.|.+     +|||+||+|+.
T Consensus       191 ~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~~~~~~~~~l~~~y~lPDg~~i~i~~erf~~pE~lFqP~~  263 (372)
T KOG0676|consen  191 RKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEEETANTSSSLESSYELPDGQKITIGNERFRCPEVLFQPSL  263 (372)
T ss_pred             HhcccccccccHHHHHHHhHhhhcccccccchhhhcccccccccccccCCCCCEEecCCcccccchhcCChhh
Confidence            456789999999999999999999999873333221   234466699999999998     99999999863

>PTZ00281 actin; Provisional

Probab=99.13  E-value=8.5e-11  Score=85.62  Aligned_cols=64  Identities=20%  Similarity=0.228  Sum_probs=48.8

Q ss_pred             CCCcccccchHHHHHHHHhhhcccccCCchhhhh-h--cCCCCceEEcCCCcEEEE-----EecccCCCCCC
Q psy3521          24 EVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKS-I--LNLPPSHYEFPNGYHQLI-----HIPTYLSNLPH   87 (88)
Q Consensus        24 ~~~~s~~~~~~~~iv~~iKe~~c~V~~~~~~~~~-~--~~~~~~~yeLPDG~~i~l-----~~pE~LF~P~~   87 (88)
                      ..+.++....+.+++++|||++|||+.+...+.. .  .....+.|+||||+.|.+     .|||+||+|+.
T Consensus       196 ~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~~~~~~~~~~~~~y~LPdg~~i~i~~er~~~~E~LF~P~~  267 (376)
T PTZ00281        196 ERGYSFTTTAEREIVRDIKEKLAYVALDFEAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSF  267 (376)
T ss_pred             hcCCCCCcHHHHHHHHHHHHhcEEecCCchHHHHhhhcCcccceeEECCCCCEEEeeHHHeeCcccccChhh
Confidence            4455666677889999999999999977322221 1  123457899999999999     99999999963

>PTZ00004 actin-2; Provisional

Probab=99.07  E-value=2.1e-10  Score=83.59  Aligned_cols=61  Identities=20%  Similarity=0.297  Sum_probs=46.5

Q ss_pred             CcccccchHHHHHHHHhhhcccccCCchhhhhh---c--CCCCceEEcCCCcEEEE-----EecccCCCCCC
Q psy3521          26 TQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSI---L--NLPPSHYEFPNGYHQLI-----HIPTYLSNLPH   87 (88)
Q Consensus        26 ~~s~~~~~~~~iv~~iKe~~c~V~~~~~~~~~~---~--~~~~~~yeLPDG~~i~l-----~~pE~LF~P~~   87 (88)
                      +..+......+++++|||++|||+.+ ++++..   .  ....+.|+||||+.|.+     +|||+||+|+.
T Consensus       198 ~~~~~~~~~~~~~~~iKe~~c~v~~d-~~~~~~~~~~~~~~~~~~y~lPdg~~i~l~~er~~~~E~LF~P~~  268 (378)
T PTZ00004        198 GTTFTTTAEKEIVRDIKEKLCYIALD-FDEEMGNSAGSSDKYEESYELPDGTIITVGSERFRCPEALFQPSL  268 (378)
T ss_pred             CCCCCcHHHHHHHHHHhhcceeecCC-HHHHHhhhhcCccccceEEECCCCCEEEEcHHHeeCcccccChhh
Confidence            34444455678999999999999988 443321   1  12357899999999999     99999999964

>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton

Probab=98.80  E-value=3.8e-09  Score=76.48  Aligned_cols=62  Identities=27%  Similarity=0.475  Sum_probs=50.2

Q ss_pred             CcccccchHHHHHHHHhhhcccccCCchh--hhhhcCCCCceEEcCCCcEEEE-----EecccCCCCCC
Q psy3521          26 TQSWHNYSVKKVVQDFQQSVLQVSETPFD--EKSILNLPPSHYEFPNGYHQLI-----HIPTYLSNLPH   87 (88)
Q Consensus        26 ~~s~~~~~~~~iv~~iKe~~c~V~~~~~~--~~~~~~~~~~~yeLPDG~~i~l-----~~pE~LF~P~~   87 (88)
                      +.++..+....+++++|+++|+|+.+...  ...........|+||||+.+.+     ++||+||+|+.
T Consensus       208 ~~~~~~~~~~~~~~~ik~~~~~v~~~~~~~~~~~~~~~~~~~~~lPdg~~i~~~~er~~~~E~LF~p~~  276 (393)
T PF00022_consen  208 GESYNNSDDEEIVEEIKEECCYVSEDPDEEQEEQASENPEKSYELPDGQTIILGKERFRIPEILFNPSL  276 (393)
T ss_dssp             TCHHSSHHHHHHHHHHHHHHHSGGSSHHHHHHHHHCSTTTEEEE-TTSSEEEESTHHHHHHHTTTSGGG
T ss_pred             cccccchhhhccchhccchhhhcccccccccccccccccceeccccccccccccccccccccccccccc
Confidence            56777888899999999999999998553  1222456688999999999999     99999999964

These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....

>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton

Probab=98.55  E-value=9.9e-08  Score=68.95  Aligned_cols=59  Identities=20%  Similarity=0.302  Sum_probs=45.4

Q ss_pred             cccchHHHHHHHHhhhcccccCCchhhh----hhcCCCCceEEcCCCcEEEE-----EecccCCCCCC
Q psy3521          29 WHNYSVKKVVQDFQQSVLQVSETPFDEK----SILNLPPSHYEFPNGYHQLI-----HIPTYLSNLPH   87 (88)
Q Consensus        29 ~~~~~~~~iv~~iKe~~c~V~~~~~~~~----~~~~~~~~~yeLPDG~~i~l-----~~pE~LF~P~~   87 (88)
                      +.......++++|||++|+|+.+...+.    .......+.|+||||+.+.+     .+||+||+|+.
T Consensus       195 ~~~~~~~~~~~~iKe~~~~v~~~~~~~~~~~~~~~~~~~~~~~lpd~~~i~~~~er~~~~E~lF~p~~  262 (371)
T cd00012         195 LNSSDEREIVRDIKEKLCYVALDIEEEQDKSAKETSLLEKTYELPDGRTIKVGNERFRAPEILFNPSL  262 (371)
T ss_pred             ccchhHHHHHHHHHHhheeecCCHHHHHHhhhccCCccceeEECCCCeEEEEChHHhhChHhcCChhh
Confidence            4555667899999999999998733332    11234467899999999999     99999999963

Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.

>smart00268 ACTIN Actin

Probab=98.54  E-value=1.6e-07  Score=67.80  Aligned_cols=59  Identities=19%  Similarity=0.346  Sum_probs=44.7

Q ss_pred             ccccchHHHHHHHHhhhcccccCCchhhhhh-------cCCCCceEEcCCCcEEEE-----EecccCCCCCC
Q psy3521          28 SWHNYSVKKVVQDFQQSVLQVSETPFDEKSI-------LNLPPSHYEFPNGYHQLI-----HIPTYLSNLPH   87 (88)
Q Consensus        28 s~~~~~~~~iv~~iKe~~c~V~~~~~~~~~~-------~~~~~~~yeLPDG~~i~l-----~~pE~LF~P~~   87 (88)
                      .+......++++++||++|+|+.+ +..+..       .....+.|+||||+.+.+     .+||+||+|+.
T Consensus       194 ~~~~~~~~~~~~~iKe~~~~v~~~-~~~~~~~~~~~~~~~~~~~~~~lpdg~~~~~~~er~~~~E~lf~p~~  264 (373)
T smart00268      194 QFNSSAEFEIVREIKEKLCYVAED-FEKEMKKARESSESSKLEKTYELPDGNTIKVGNERFRIPEILFKPEL  264 (373)
T ss_pred             CCCcHHHHHHHHHhhhheeeecCC-hHHHHHHhhhcccccccceeEECCCCCEEEEChHHeeCchhcCCchh
Confidence            344445678999999999999987 333221       123457899999999999     99999999953

ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily

>PTZ00280 Actin-related protein 3; Provisional

Probab=98.30  E-value=9.9e-07  Score=65.00  Aligned_cols=61  Identities=8%  Similarity=-0.063  Sum_probs=43.5

Q ss_pred             CCcccccchHHHHHHHHhhhcccccCCchhhhhh--c---CCCCceEEcCC---Cc--EEEE-----EecccCCCCC
Q psy3521          25 VTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKSI--L---NLPPSHYEFPN---GY--HQLI-----HIPTYLSNLP   86 (88)
Q Consensus        25 ~~~s~~~~~~~~iv~~iKe~~c~V~~~~~~~~~~--~---~~~~~~yeLPD---G~--~i~l-----~~pE~LF~P~   86 (88)
                      .+.++......+++++|||++|||+.+ +..+..  .   ....+.|++||   |.  .|.+     +|||+||+|+
T Consensus       208 ~~~~~~~~~~~~~~~~iKe~~c~v~~d-~~~e~~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~  283 (414)
T PTZ00280        208 RGEPIPAEDILLLAQRIKEKYCYVAPD-IAKEFEKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPE  283 (414)
T ss_pred             cCCCCCcHHHHHHHHHHHHhcCcccCc-HHHHHHHhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChh
Confidence            344455445678999999999999987 433321  1   12356799998   33  7777     9999999995

>KOG0680|consensus

Probab=98.15  E-value=7.5e-07  Score=64.64  Aligned_cols=63  Identities=25%  Similarity=0.280  Sum_probs=41.3

Q ss_pred             CCCcccccchHH---HHHHHHhhhcccccCCchhhhh--h-----cCCCCceEEcCCCc-------------------EE
Q psy3521          24 EVTQSWHNYSVK---KVVQDFQQSVLQVSETPFDEKS--I-----LNLPPSHYEFPNGY-------------------HQ   74 (88)
Q Consensus        24 ~~~~s~~~~~~~---~iv~~iKe~~c~V~~~~~~~~~--~-----~~~~~~~yeLPDG~-------------------~i   74 (88)
                      +...||+.+--+   .++.+|||.+||||.+ +.+.+  +     .+.....|.|||=+                   .|
T Consensus       194 KE~iSyR~lNvmdET~vVNeiKEdvcfVSqn-F~~~m~~~~~k~~~~~~~i~YvLPDF~T~k~Gyvr~~~vk~~~d~qii  272 (400)
T KOG0680|consen  194 KETISYRHLNVMDETYVVNEIKEDVCFVSQN-FKEDMDIAKTKFQENKVMIDYVLPDFSTSKRGYVRNEDVKLPEDEQII  272 (400)
T ss_pred             HHHhhhhhhcccchhhhhhhhhhheEEechh-hHHHHHHHhhccccceeEEEEecCCcccccceeEecCCCCCCCCccee
Confidence            445566655433   4899999999999987 43322  1     12234567777632                   44


Q ss_pred             EE-----EecccCCCCCC
Q psy3521          75 LI-----HIPTYLSNLPH   87 (88)
Q Consensus        75 ~l-----~~pE~LF~P~~   87 (88)
                      +|     .+||+||+|+.
T Consensus       273 ~L~nErF~IPEilF~Psd  290 (400)
T KOG0680|consen  273 TLTNERFTIPEILFSPSD  290 (400)
T ss_pred             eecccccccchhhcChhh
Confidence            44     89999999973

>COG5277 Actin and related proteins [Cytoskeleton]

Probab=96.38  E-value=0.0041  Score=46.94  Aligned_cols=54  Identities=19%  Similarity=0.242  Sum_probs=41.0

Q ss_pred             hHHHHHHHHhhhcc-------cccCCchhh---hhh----------------cCCCCceEEcCCCcEEEE------Eecc
Q psy3521          33 SVKKVVQDFQQSVL-------QVSETPFDE---KSI----------------LNLPPSHYEFPNGYHQLI------HIPT   80 (88)
Q Consensus        33 ~~~~iv~~iKe~~c-------~V~~~~~~~---~~~----------------~~~~~~~yeLPDG~~i~l------~~pE   80 (88)
                      ...++++.+|+.+|       |++.+..+.   ...                ......+|++|||..+.+      ++||
T Consensus       220 ~~~ei~~~ik~e~~~~~~~~~y~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~e~rf~~pE  299 (444)
T COG5277         220 YSSEIVNEIKEEVCETDDESAYVSLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEFGNEERFKAPE  299 (444)
T ss_pred             ccHHHHHHHHHhhccccccccchhhcchHHHHHHhhhhhhhcccccccccchhccccccccCCCCceEeechhhhhhcch
Confidence            45789999999999       887552211   110                124478899999999999      8999


Q ss_pred             cCCCCC
Q psy3521          81 YLSNLP   86 (88)
Q Consensus        81 ~LF~P~   86 (88)
                      .||+|.
T Consensus       300 ~lF~pe  305 (444)
T COG5277         300 ILFKPE  305 (444)
T ss_pred             hhcCCc
Confidence            999997

>KOG0678|consensus

Probab=92.17  E-value=0.07  Score=39.41  Aligned_cols=39  Identities=5%  Similarity=-0.061  Sum_probs=25.8

Q ss_pred             CCcceeccCCCCCCcccccchHHHHHHHHhhhcccccCC
Q psy3521          13 PPKWTRKKNLPEVTQSWHNYSVKKVVQDFQQSVLQVSET   51 (88)
Q Consensus        13 ~~~~~~~~~~~~~~~s~~~~~~~~iv~~iKe~~c~V~~~   51 (88)
                      .-++..+.++-+++......+..+..+.|||.+||++.|
T Consensus       198 diT~fiQ~llRer~~~iP~e~sl~tak~iKe~ycy~cPd  236 (415)
T KOG0678|consen  198 DITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYTCPD  236 (415)
T ss_pred             chhHHHHHHhhCCCCCCChHHhhhhhHHHHhhhcccCcH
Confidence            333333333334445445566778999999999999987

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	88
3qb0_A	498	Actin-related protein 4; actin fold, ATP binding,	99.56
1k8k_B	394	ARP2, actin-like protein 2; beta-propeller, struct	98.6
2fxu_A	375	Alpha-actin-1, actin, alpha skeletal muscle; actin	98.46
3dwl_A	427	Actin-related protein 3; propellor, actin-binding,	98.33
1k8k_A	418	ARP3, actin-like protein 3, actin-2; beta-propelle	98.08
4am6_A	655	Actin-like protein ARP8; nuclear protein, chromati	97.71
4fo0_A	593	Actin-related protein 8; chromatin remodeling, nuc	97.25
4fo0_A	593	Actin-related protein 8; chromatin remodeling, nuc	81.42

>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus, structural protein; HET: ATP; 3.40A {Saccharomyces cerevisiae}

Probab=99.56  E-value=1.5e-15  Score=113.26  Aligned_cols=73  Identities=15%  Similarity=0.178  Sum_probs=59.0

Q ss_pred             cceeccCCCCCCcccccch-HHHHHHHHhhhcccccCC-chhhhh--hcCCCCceEEcCCCcEEEE------EecccCCC
Q psy3521          15 KWTRKKNLPEVTQSWHNYS-VKKVVQDFQQSVLQVSET-PFDEKS--ILNLPPSHYEFPNGYHQLI------HIPTYLSN   84 (88)
Q Consensus        15 ~~~~~~~~~~~~~s~~~~~-~~~iv~~iKe~~c~V~~~-~~~~~~--~~~~~~~~yeLPDG~~i~l------~~pE~LF~   84 (88)
                      .+..+.+.++++.||..+. .++++++|||++|||+.+ .++++.  ..+...+.|+||||+.|.+      +|||+||+
T Consensus       224 ~~~~~~~~~~~~~s~~~~~~~~~iv~~iKE~~c~Va~~~~~~~~~~~~~~~~~~~yeLPDG~~i~lg~E~Rf~~pE~LF~  303 (498)
T 3qb0_A          224 EFIKKTFDYEVDKSLYDYANNRGFFQECKETLCHICPTKTLEETKTELSSTAKRSIESPWNEEIVFDNETRYGFAEELFL  303 (498)
T ss_dssp             SCEECCCSSCCCHHHHHHHHHHTHHHHHHHHTCCCCSSCHHHHHHHHHHTCCCEEEECSSSCEEEECHHHHHHHHHTTTS
T ss_pred             ccccccCCCccCccHHHHHHHHHHHHHHHHhhEEecCCccHhHHhhhccCcCceEEECCCCCEEEECchHhhhCchhhCC
Confidence            3556666777888999998 566999999999999986 344432  2456789999999999999      89999999


Q ss_pred             CCC
Q psy3521          85 LPH   87 (88)
Q Consensus        85 P~~   87 (88)
                      |+.
T Consensus       304 P~~  306 (498)
T 3qb0_A          304 PKE  306 (498)
T ss_dssp             CCG
T ss_pred             HhH
Confidence            963

>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B* 2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B* 3dxm_B* 3rse_B 2p9k_B*

Probab=98.60  E-value=3.6e-08  Score=70.83  Aligned_cols=60  Identities=13%  Similarity=0.148  Sum_probs=44.5

Q ss_pred             cccccchHHHHHHHHhhhcccccCCchhhhh-h--cCCCCceEEcCCCcEEEE-----EecccCCCCC
Q psy3521          27 QSWHNYSVKKVVQDFQQSVLQVSETPFDEKS-I--LNLPPSHYEFPNGYHQLI-----HIPTYLSNLP   86 (88)
Q Consensus        27 ~s~~~~~~~~iv~~iKe~~c~V~~~~~~~~~-~--~~~~~~~yeLPDG~~i~l-----~~pE~LF~P~   86 (88)
                      .++......+++++||+++|+|+.+...+.. .  .+...+.|+||||+.+.+     +|||+||+|+
T Consensus       202 ~~~~~~~~~~~ae~iK~~~~~v~~d~~~~~~~~~~~~~~~~~~~lpdg~~i~i~~erf~~~E~Lf~p~  269 (394)
T 1k8k_B          202 YAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLVESYTLPDGRIIKVGGERFEAPEALFQPH  269 (394)
T ss_dssp             CCCCTTTTHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEECTTSCEEEECTHHHHTGGGGTCGG
T ss_pred             CCCCcHHHHHHHHHHHHhheeEecCHHHHHHhhccCCcCceEEECCCCCEEEECchhhcChHhhCCch
Confidence            3444345678999999999999977322221 1  233457899999999999     8999999995

>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to bistramide A, structural protein; HET: HIC ATP BID; 1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1 PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1* 1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0* 1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A* ...

Probab=98.46  E-value=1.5e-07  Score=67.03  Aligned_cols=59  Identities=20%  Similarity=0.315  Sum_probs=44.4

Q ss_pred             cccccchHHHHHHHHhhhcccccCCchhhhh----hcCCCCceEEcCCCcEEEE-----EecccCCCCC
Q psy3521          27 QSWHNYSVKKVVQDFQQSVLQVSETPFDEKS----ILNLPPSHYEFPNGYHQLI-----HIPTYLSNLP   86 (88)
Q Consensus        27 ~s~~~~~~~~iv~~iKe~~c~V~~~~~~~~~----~~~~~~~~yeLPDG~~i~l-----~~pE~LF~P~   86 (88)
                      .++......+++++||+++|+|+.+ +..+.    ..+.....|+||||+.+.+     +|||+||+|+
T Consensus       198 ~~~~~~~~~~~~e~iK~~~~~v~~~-~~~e~~~~~~~~~~~~~~~lpdg~~i~i~~erf~~~E~lf~p~  265 (375)
T 2fxu_A          198 YSFVTTAEREIVRDIKEKLCYVALD-FENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPS  265 (375)
T ss_dssp             CCCCSHHHHHHHHHHHHHHCCCCSS-HHHHHHHHHHCSTTCEEEECTTSCEEEESTHHHHHHHTTTCGG
T ss_pred             CCCCcHHHHHHHHHHHHHHHhhccc-HHHHHHhhcccCccCeEEECCCCCEEEEChhheechHhhCCCc
Confidence            3333334668999999999999977 43322    1233467899999999999     8999999994

>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.33  E-value=6.4e-08  Score=70.71  Aligned_cols=54  Identities=13%  Similarity=-0.027  Sum_probs=33.2

Q ss_pred             chHHHHHHHHhhhcccccCCchhhhhh--c--CCCCceEEc--CCCc--EEEE-----EecccCCCCC
Q psy3521          32 YSVKKVVQDFQQSVLQVSETPFDEKSI--L--NLPPSHYEF--PNGY--HQLI-----HIPTYLSNLP   86 (88)
Q Consensus        32 ~~~~~iv~~iKe~~c~V~~~~~~~~~~--~--~~~~~~yeL--PDG~--~i~l-----~~pE~LF~P~   86 (88)
                      ....+++++|||++|||+.+ ++++..  .  ....+.|+|  |||.  .|.+     +|||+||+|+
T Consensus       231 ~~~~~~~~~IKe~~cyv~~d-~~~e~~~~~~~~~~~~~~~l~~~~g~~~~i~ig~erf~~pE~LF~P~  297 (427)
T 3dwl_A          231 DSSLKTAERIKEECCYVCPD-IVKEFSRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPE  297 (427)
T ss_dssp             ---CHHHHHHHHHHCCCCSC-HHHHHHHTTC-----CCBCC---------CBCCTHHHHSGGGGTCGG
T ss_pred             chhHHHHHHHHHhcCcccCC-HHHHHHHhhcCccccceeEeeCCCCCeeEEEEChHhhhChhhccCch
Confidence            34568999999999999988 433321  1  112567889  9998  6666     6999999994

>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB: 1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A* 2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A

Probab=98.08  E-value=1.9e-06  Score=61.81  Aligned_cols=56  Identities=9%  Similarity=-0.119  Sum_probs=41.0

Q ss_pred             cchHHHHHHHHhhhcccccCCchhhhh----hcCCCCceEEcCCCc-----EEEE-----EecccCCCCC
Q psy3521          31 NYSVKKVVQDFQQSVLQVSETPFDEKS----ILNLPPSHYEFPNGY-----HQLI-----HIPTYLSNLP   86 (88)
Q Consensus        31 ~~~~~~iv~~iKe~~c~V~~~~~~~~~----~~~~~~~~yeLPDG~-----~i~l-----~~pE~LF~P~   86 (88)
                      .....++++++|+++|+|+.+...+..    ........|+||||.     .+.+     +|||+||+|+
T Consensus       217 ~~~~~~~~e~iK~~~~~v~~~~~~e~~~~~~~~~~~~~~~~lpd~~~~~~~~i~l~~erf~~~E~lF~P~  286 (418)
T 1k8k_A          217 PEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPE  286 (418)
T ss_dssp             GGGHHHHHHHHHHHHCCCCSCHHHHHHHHHHSGGGTCEEEEEECTTTCCEEEEEECTHHHHHHHTTTCGG
T ss_pred             CHHHHHHHHHHHHhhchhcccHHHHHHhhcccccccceeEECCCCCCCcccEEEeChHHhhCcHhhCCCc
Confidence            345678999999999999987322211    011223689999999     8888     7799999995

>4am6_A Actin-like protein ARP8; nuclear protein, chromatin remodelling complex, ATP-binding nuclear actin-related protein; 2.70A {Saccharomyces cerevisiae} PDB: 4am7_A*

Probab=97.71  E-value=2.6e-06  Score=65.39  Aligned_cols=54  Identities=9%  Similarity=-0.009  Sum_probs=35.3

Q ss_pred             ccccchHHHHHHHHhhhccccc-CCchhhhhhcCCCCceEEcCCC----cEEEE-----EecccCCCCC
Q psy3521          28 SWHNYSVKKVVQDFQQSVLQVS-ETPFDEKSILNLPPSHYEFPNG----YHQLI-----HIPTYLSNLP   86 (88)
Q Consensus        28 s~~~~~~~~iv~~iKe~~c~V~-~~~~~~~~~~~~~~~~yeLPDG----~~i~l-----~~pE~LF~P~   86 (88)
                      +|....+.+++++|||++|||+ .+ ...+..    ......|++    +++.+     +|||+||+|.
T Consensus       326 ~f~t~~e~eiVrdIKEk~CyVs~~D-i~~q~~----~f~~r~P~~~~~ky~i~vgdErflaPe~lF~Pe  389 (655)
T 4am6_A          326 KIDSKHGWLLAERLKKNFTTFQDAD-VAVQLY----NFMNRSPNQPTEKYEFKLFDEVMLAPLALFFPQ  389 (655)
T ss_dssp             CTTSHHHHHHHHHHHHHHCCCCGGG-CCSEEE----EEEECCSSSCEEEEEEEESSHHHHHHHGGGSTH
T ss_pred             CCCCcchHHHHHHHHHheEEEcccc-hhhhhh----cceeccCCCCCcceEEEECCeehhCchhcCChh
Confidence            5566678899999999999995 33 211110    011123554    35666     9999999995

>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}

Probab=97.25  E-value=7.6e-05  Score=55.60  Aligned_cols=52  Identities=12%  Similarity=0.044  Sum_probs=38.8

Q ss_pred             cchHHHHHHHHhhhcccccCCchhhhhhcCCCCceEEcCCCcEEEE---------EecccCCCCC
Q psy3521          31 NYSVKKVVQDFQQSVLQVSETPFDEKSILNLPPSHYEFPNGYHQLI---------HIPTYLSNLP   86 (88)
Q Consensus        31 ~~~~~~iv~~iKe~~c~V~~~~~~~~~~~~~~~~~yeLPDG~~i~l---------~~pE~LF~P~   86 (88)
                      ...+.+++++|||++|||+.+....+    .....+.+|||.....         .+||.||+|.
T Consensus       305 ~~~d~~~v~~iKe~~c~v~~d~~~~~----~~~~~~~~p~~~~~~~~~~~~~E~~~~p~~lf~p~  365 (593)
T 4fo0_A          305 NKMDCLLLQHLKETFCHLDQDISGLQ----DHEFQIRHPDSPALLYQFRLGDEKLQAPMALFYPA  365 (593)
T ss_dssp             CHHHHHHHHHHHHHHCBCCTTCCSCE----EEEEEECCTTSCEEEEEEEECTHHHHHHHTTTSGG
T ss_pred             cchhHHHHHHHHHHhcccccchHHhh----hhhhhcccCCCCceeeEEeccchhhcCchhhcChh
Confidence            34567899999999999998732222    1235678899987665         7899999985

>4fo0_A Actin-related protein 8; chromatin remodeling, nucleosomes, NU gene regulation; HET: ATP; 2.60A {Homo sapiens}

Probab=81.42  E-value=0.3  Score=36.20  Aligned_cols=26  Identities=15%  Similarity=0.232  Sum_probs=0.0

Q ss_pred             CCCceEEcCCCcEEEE-----EecccCCCCC
Q psy3521          61 LPPSHYEFPNGYHQLI-----HIPTYLSNLP   86 (88)
Q Consensus        61 ~~~~~yeLPDG~~i~l-----~~pE~LF~P~   86 (88)
                      ...+.|++|||..+.+     .+||.||+|+
T Consensus       409 ~~~~~~~~p~g~~~~~~~e~~~~pe~lf~p~  439 (593)
T 4fo0_A          409 ADRKSASKPIGFEGDLRGQSSDLPERLHSQE  439 (593)
T ss_dssp             -------------------------------
T ss_pred             cccccccCCCCcccccccccccCchhccCcc
Confidence            4568899999999999     9999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	88
d2fxua2	225	Actin {Cow (Bos taurus) [TaxId: 9913]}	98.82
d1k8kb1	190	Actin-related protein 2, Arp2 {Cow (Bos taurus) [T	98.72
d1k8ka2	258	Actin-related protein 3, Arp3 {Cow (Bos taurus) [T	97.89

>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.82  E-value=1.4e-09  Score=71.33  Aligned_cols=62  Identities=19%  Similarity=0.216  Sum_probs=49.1

Q ss_pred             CCcccccchHHHHHHHHhhhcccccCCchhhhh---hcCCCCceEEcCCCcEEEE-----EecccCCCCC
Q psy3521          25 VTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKS---ILNLPPSHYEFPNGYHQLI-----HIPTYLSNLP   86 (88)
Q Consensus        25 ~~~s~~~~~~~~iv~~iKe~~c~V~~~~~~~~~---~~~~~~~~yeLPDG~~i~l-----~~pE~LF~P~   86 (88)
                      .+.++....+.++++++||.+|+++.+...+..   ......+.|+||||+.+.+     .+||+||+|.
T Consensus        50 ~~~~~~~~~~~~~~~~~ke~~~~~~~d~~~e~~~~~~~~~~~~~~~lpdg~~i~i~~er~~~~E~lF~p~  119 (225)
T d2fxua2          50 RGYSFVTTAEREIVRDIKEKLCYVALDFENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPS  119 (225)
T ss_dssp             HTCCCCSHHHHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEECTTSCEEEESTHHHHHHHTTTCGG
T ss_pred             ccCCcCCHHHHHHHHHHHHHHhhcccchhHHHhhcccCcccceeEECCCCCEEEEchHhccccHhhcCcc
Confidence            344555666788999999999999988544432   2345578999999999999     9999999996

>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 2, Arp2
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.72  E-value=4.9e-09  Score=67.24  Aligned_cols=61  Identities=13%  Similarity=0.125  Sum_probs=47.6

Q ss_pred             cccccchHHHHHHHHhhhcccccCCchhhhh---hcCCCCceEEcCCCcEEEE-----EecccCCCCCC
Q psy3521          27 QSWHNYSVKKVVQDFQQSVLQVSETPFDEKS---ILNLPPSHYEFPNGYHQLI-----HIPTYLSNLPH   87 (88)
Q Consensus        27 ~s~~~~~~~~iv~~iKe~~c~V~~~~~~~~~---~~~~~~~~yeLPDG~~i~l-----~~pE~LF~P~~   87 (88)
                      ..+.......+++++|+++|+|+.+...+..   ........|+||||+.+.+     ++||+||+|+.
T Consensus        49 ~~~~~~~~~~~~~~i~~~~~~v~~~~~~e~~~~~~~~~~~~~~~lpdg~~i~i~~er~~~~E~lF~p~~  117 (190)
T d1k8kb1          49 YAFNHSADFETVRMIKEKLCYVGYNIEQEQKLALETTVLVESYTLPDGRIIKVGGERFEAPEALFQPHL  117 (190)
T ss_dssp             CCCCTTTTHHHHHHHHHHHCCCCSSHHHHHHHHHHCSTTCEEEECTTSCEEEECTHHHHTGGGGTCGGG
T ss_pred             CcccchHHHHHHHHHHhhhhhhcccHHHHHHhhhcccceeeeeecCCCcEEEEChhhccccccccChhh
Confidence            3444445668999999999999988544422   2346678999999999999     99999999953

>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Actin-related protein 3, Arp3
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.89  E-value=2.7e-06  Score=56.21  Aligned_cols=63  Identities=8%  Similarity=-0.100  Sum_probs=44.7

Q ss_pred             CCCcccccchHHHHHHHHhhhcccccCCchhhhh----hcCCCCceEEcCC-----CcEEEE-----EecccCCCCC
Q psy3521          24 EVTQSWHNYSVKKVVQDFQQSVLQVSETPFDEKS----ILNLPPSHYEFPN-----GYHQLI-----HIPTYLSNLP   86 (88)
Q Consensus        24 ~~~~s~~~~~~~~iv~~iKe~~c~V~~~~~~~~~----~~~~~~~~yeLPD-----G~~i~l-----~~pE~LF~P~   86 (88)
                      +.+.+.......++++++|+.+|||+.+...+..    ......+.|.+||     |+.+.+     ++||+||+|+
T Consensus        50 ~~~~~~~~~~~~~~~~~~ke~~~~v~~d~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~er~~~~E~lF~p~  126 (258)
T d1k8ka2          50 DREVGIPPEQSLETAKAVKERYSYVCPDLVKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPE  126 (258)
T ss_dssp             TTCCCCCGGGHHHHHHHHHHHHCCCCSCHHHHHHHHHHSGGGTCEEEEEECTTTCCEEEEEECTHHHHHHHTTTCGG
T ss_pred             HcCCCCCcHHHHHHHHhHHhhhcccccchHHHHHhhcccccccccccccccccCCCCeEEecCccceeccHHHhhhh
Confidence            4455566666788999999999999988443321    1223345677765     557777     8999999996