Psyllid ID: psy3534

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280--
Protein Sequence
MSQMVPSPDIYQRSATYYEKPTPPRTLSLSEKASCTPAQGASIPHVPGDLNNDLYAVPVKLRGASPLPPLLADLSPSLSSTLSSVEAEEQLPPGWERHEDNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETVNNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETNGSSSNSVLSMVTRSNTSSALEDLDGKRKEDLAFKRRSYPARAESDTKDKLIRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLGRNHHSTIYFQSDFFSL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccEEEcccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccEEcccccccccccccccccccccHHHHHcHHHHccccccccccEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHcHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccHHHHHHHccccccccccccccccEEEEEEcccEEEccHHHccccccHHHHHHHHHHHHcccccccEEEEEcccccc
Coil and Loop (DISEMBL)
msqmvpspdiyqrsatyyekptpprtlslsekasctpaqgasiphvpgdlnndlyavpvklrgasplpplladlspslsstlssveaeeqlppgwerhedndgpyywhiksgtiqrdppeftygknepktplvkdaetvnndgpyywhiksgtiqrdppeftygknepktplvkdaetngsssnsVLSMVTRsntssaledldgkrkedlafkrrsyparaesdtkDKLIRFAVRSLGwveisehdltpersskaVNKCIVdlslgrnhhstiyfqsdffsl
Flexible Loop (DISEMBL)
msqmvpspdiyqrsatyyeKPTPPRTLSLSEKASCTPAQGASIPHVPGDLNNDLYAVPVKLRGASPLPPLLADLSPSLSSTLSSVEAEEQLPPGWERHEDNDGPYYWHIKSGTIQRDPPEFTygknepktplvkdaetvNNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVkdaetngsssnsvlsmvtrsntssaledldgkrkedlafkrrsyparaesdtkdklIRFAVRSLGwveisehdltpersskaVNKCIVDLslgrnhhstiyfqsdffsl
Low Complexity Region (SEG)
MSQMVPSPDIYQRSATYYEKPTPPRTLSLSEKASCTPAQGASIPHVPGDLNNDLYAVPVKLRGAsplpplladlspslsstlssVEAEEQLPPGWERHEDNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETVNNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETNGSSSNSVLSMVTRSNTSSALEDLDGKRKEDLAFKRRSYPARAESDTKDKLIRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLGRNHHSTIYFQSDFFSL
Disordered region (IsUnstruct)
*************************************************LNNDLYAVPVKL******************************************PYYWHIKSGTI************************VNNDGPYYWHIKSGTI*************************************************************************KLIRFAVRSLGWVEISEHDL******KAVNKCIVDLSLGRNHHSTIYFQSDF***
Disordered Region (DISOPRED)
**********************************************************************************************WERHEDNDGPYYWHIKS*******************************GPYYWHIKSGTI**************************************************************************LIRFAVRSLGWVEISEHD****RSSKAVNKCIVDLSLGRNHHSTIYFQSDFFSL
Disordered Region (DISEMBL)
MSQMVPSPDIYQRSATYYEK*******************GASIPHVPGDLNNDLYAVPVKLRGASPLPPLLADLSPS**************PPGWERHEDNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETVNNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETNGSSSNSVLSMVTRSNTSSALEDLDGKRKEDLAFKRRSYPARAESDTKDKLIRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLGRNHHSTIYFQSDFFSL
Disordered Region (DISPRO)
***************************************************************************************EEQLPPGWERHEDNDGPYYWHIKSGTIQRDPPE****************************************************************************SAL****GKRKEDLAFKRRS********TKDKLIRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLGRNHHSTIYFQSDFFSL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSQMVPSPDIYQRSATYYEKPTPPRTLSLSEKASCTPAQGASIPHVPGDLNNDLYAVPVKLRGASPLPPLLADLSPSLSSTLSSVEAEEQLPPGWERHEDNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETVNNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETNGSSSNSVLSMVTRSNTSSALEDLDGKRKEDLAFKRRSYPARAESDTKDKLIRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLGRNHHSTIYFQSDFFSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	282	2.2.26 [Sep-21-2011]
O95704	486	Amyloid beta A4 precursor	yes	N/A	0.464	0.269	0.338	4e-13
Q9DBR4	760	Amyloid beta A4 precursor	yes	N/A	0.567	0.210	0.331	2e-12
Q9QXJ1	710	Amyloid beta A4 precursor	no	N/A	0.553	0.219	0.312	2e-12
O35827	504	Amyloid beta A4 precursor	no	N/A	0.460	0.257	0.313	2e-12
Q8R1C9	486	Amyloid beta A4 precursor	no	N/A	0.468	0.271	0.318	3e-12
Q92870	758	Amyloid beta A4 precursor	no	N/A	0.570	0.212	0.328	3e-12
P46933	711	Amyloid beta A4 precursor	no	N/A	0.553	0.219	0.307	9e-12
O00213	710	Amyloid beta A4 precursor	no	N/A	0.414	0.164	0.318	1e-08

>sp|O95704|APBB3_HUMAN Amyloid beta A4 precursor protein-binding family B member 3 OS=Homo sapiens GN=APBB3 PE=1 SV=2

 Score = 75.5 bits (184), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/186 (33%), Positives = 78/186 (41%), Gaps = 55/186 (29%)

Query: 84  SVEAEEQLPPGWERHEDNDGPYYWHIKSGTIQRDPPEFTYGKNE-PKTPLVKDAETVNND 142
           S+E E  LPPGW +  D  G YYWH+ SG+ Q   P +  G  E P T            
Sbjct: 24  SLEVEAGLPPGWRKIHDAAGTYYWHVPSGSTQWQRPTWELGDAEDPGT------------ 71

Query: 143 GPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETNGSSSNSVLSMVTRSNTSSALEDL 202
                    GT      E  +G   PK          G S +S+ S + RSN+ S     
Sbjct: 72  ---------GT------EGIWGLRPPK----------GRSFSSLESSLDRSNSLS----- 101

Query: 203 DGKRKEDLAFKRRSYPARAESDTKDKLIRFAVRSLGWVEISEHDLTPERSSKAVNKCIVD 262
                    +   SY    E   K     FAVRSLGWVE+ E DL P +SS AVN CI  
Sbjct: 102 --------WYGGESYIQSMEPGAK----CFAVRSLGWVEVPEEDLAPGKSSIAVNNCIQQ 149

Query: 263 LSLGRN 268
           L+  R+
Sbjct: 150 LAQTRS 155

May modulate the internalization of beta-amyloid precursor protein.
Homo sapiens (taxid: 9606)

>sp|Q9DBR4|APBB2_MOUSE Amyloid beta A4 precursor protein-binding family B member 2 OS=Mus musculus GN=Apbb2 PE=1 SV=2

 Score = 73.6 bits (179), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 65/196 (33%), Positives = 86/196 (43%), Gaps = 36/196 (18%)

Query: 84  SVEAEEQLPPGWERHEDNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETVNNDG 143
           S + +  LPPGW+R  D  G YYWHI +GT Q + P                        
Sbjct: 285 SFQTDPDLPPGWKRVNDIAGTYYWHIPTGTTQWERPVSI--------------------- 323

Query: 144 PYYWH-IKSGTIQRDPPEFTYGKNEPKTPLVKDAETNGSSSNSVL---SMVTRSNTSSAL 199
           P   H  + G++    P  T  +NE K P    A  NG   NS +         N   +L
Sbjct: 324 PADLHGSRKGSLSSVTPSPT-PENE-KQPWSDFAVLNGGKINSDIWKDLHAATVNPDPSL 381

Query: 200 EDLDGKRKEDLAFKRRSYP-------ARAESDTKDKLIRFAVRSLGWVEISEHDLTPERS 252
           ++ +G      + K R+ P           SD + K   FAVRSLGWVE++E DL P +S
Sbjct: 382 KEFEGATLRYASLKLRNAPHGDDDDSCSINSDPEAKC--FAVRSLGWVEMAEEDLAPGKS 439

Query: 253 SKAVNKCIVDLSLGRN 268
           S AVN CI  LS  +N
Sbjct: 440 SVAVNNCIRQLSYCKN 455

May modulate the internalization of beta-amyloid precursor protein.

Mus musculus (taxid: 10090)

>sp|Q9QXJ1|APBB1_MOUSE Amyloid beta A4 precursor protein-binding family B member 1 OS=Mus musculus GN=Apbb1 PE=1 SV=3

 Score = 73.2 bits (178), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/192 (31%), Positives = 87/192 (45%), Gaps = 36/192 (18%)

Query: 83  SSVEAEEQLPPGWERHEDNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETVNND 142
           ++ E +  LP GW R +D  G YYWHI +GT Q +PP    G+  P         +   +
Sbjct: 247 NAFETDSDLPAGWMRVQDTSGTYYWHIPTGTTQWEPP----GRASP-----SQGSSPQEE 297

Query: 143 GPYYWHIKSGTIQRDPPEFTYGKNEP--KTPL---VKDAETNGSSSNSVLSMVTRSNTSS 197
               W       Q    E  + K+EP  + P+   +KD E             T S  + 
Sbjct: 298 SQLTW--TGFAHQEGFEEGEFWKDEPSEEAPMELGLKDPEE-----------ATLSFPAQ 344

Query: 198 ALEDLDGKRKEDLAFKRRSYPARAESDTKDKLIRFAVRSLGWVEISEHDLTPERSSKAVN 257
           +L      ++E+   +R + P          +  FAVRSLGWVE++E +L P RSS AVN
Sbjct: 345 SLSPEPVPQEEEKLSQRNANPG---------IKCFAVRSLGWVEMTEEELAPGRSSVAVN 395

Query: 258 KCIVDLSLGRNH 269
            CI  LS  +N+
Sbjct: 396 NCIRQLSYHKNN 407

Adapter protein that forms a transcriptionally active complex with the gamma-secretase-derived amyloid precursor protein (APP) intracellular domain. Plays a central role in the response to DNA damage by translocating to the nucleus and inducing apoptosis. May act by specifically recognizing and binding histone H2AX phosphorylated on 'Tyr-142' (H2AXY142ph) at double-strand breaks (DSBs), recruiting other pro-apoptosis factors such as MAPK8/JNK1. Required for histone H4 acetylation at double-strand breaks (DSBs). Its ability to specifically bind modified histones and chromatin modifying enzymes such as KAT5/TIP60, probably explains its trancription activation activity. Function in association with TSHZ3, SET and HDAC factors as a transcriptional repressor, that inhibits the expression of CASP4. Associates with chromatin in a region surrounding the CASP4 transcriptional start site(s).

Mus musculus (taxid: 10090)

>sp|O35827|APBB3_RAT Amyloid beta A4 precursor protein-binding family B member 3 OS=Rattus norvegicus GN=Apbb3 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/185 (31%), Positives = 77/185 (41%), Gaps = 55/185 (29%)

Query: 84  SVEAEEQLPPGWERHEDNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETVNNDG 143
           ++E E  LPPGW +  D  G YYWH+ SG+ Q   P +   ++ P T             
Sbjct: 24  NLEGETGLPPGWRKIRDAAGTYYWHVPSGSTQWQRPTWELAED-PGTG------------ 70

Query: 144 PYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETNGSSSNSVLSMVTRSNTSSALEDLD 203
                 K G  +  PP+                   G S +S+ S + RSN+ +      
Sbjct: 71  ------KEGIWELRPPK-------------------GRSFSSLDSSLNRSNSLT------ 99

Query: 204 GKRKEDLAFKRRSYPARAESDTKDKLIRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDL 263
                   +   SY    E   K     FAVRSLGWVE+ E DL P +SS AVN CI  L
Sbjct: 100 -------WYNEDSYVRSLEPGAKC----FAVRSLGWVEVPEEDLAPGKSSIAVNNCIQQL 148

Query: 264 SLGRN 268
           +  RN
Sbjct: 149 AQARN 153

May modulate the internalization of beta-amyloid precursor protein.

Rattus norvegicus (taxid: 10116)

>sp|Q8R1C9|APBB3_MOUSE Amyloid beta A4 precursor protein-binding family B member 3 OS=Mus musculus GN=Apbb3 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 59/185 (31%), Positives = 75/185 (40%), Gaps = 53/185 (28%)

Query: 84  SVEAEEQLPPGWERHEDNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETVNNDG 143
           ++E E  LPPGW +  D  G YYWH+ SG+ Q   P +     E                
Sbjct: 24  NLEGETGLPPGWRKIRDAAGTYYWHVPSGSTQWQRPTWELPGAE---------------- 67

Query: 144 PYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETNGSSSNSVLSMVTRSNTSSALEDLD 203
                        DP   T G  E + P        G S +S+ S + RSN+ +      
Sbjct: 68  -------------DPGRGTEGIWELRPP-------KGRSFSSLDSSLNRSNSLT------ 101

Query: 204 GKRKEDLAFKRRSYPARAESDTKDKLIRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDL 263
                   +   SY    E   K     FAVRSLGWVE+ E DL P +SS AVN CI  L
Sbjct: 102 -------WYSEDSYVRSLEPGAKC----FAVRSLGWVEVPEEDLAPGKSSIAVNNCIQQL 150

Query: 264 SLGRN 268
           +  RN
Sbjct: 151 AQTRN 155

May modulate the internalization of beta-amyloid precursor protein.

Mus musculus (taxid: 10090)

>sp|Q92870|APBB2_HUMAN Amyloid beta A4 precursor protein-binding family B member 2 OS=Homo sapiens GN=APBB2 PE=1 SV=3

 Score = 72.8 bits (177), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/195 (32%), Positives = 89/195 (45%), Gaps = 34/195 (17%)

Query: 84  SVEAEEQLPPGWERHEDNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETVNNDG 143
           S + +  LPPGW+R  D  G YYWHI +GT Q + P            +  D +      
Sbjct: 285 SFQTDPDLPPGWKRVSDIAGTYYWHIPTGTTQWERP----------VSIPADLQGS---- 330

Query: 144 PYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETNGSSSNSVLSMVTRSNTSS---ALE 200
                 + G++    P  T  +NE K P    A  NG   NS +     + T +   +L+
Sbjct: 331 ------RKGSLSSVTPSPT-PENE-KQPWSDFAVLNGGKINSDIWKDLHAATVNPDPSLK 382

Query: 201 DLDGKRKEDLAFKRRSYP-------ARAESDTKDKLIRFAVRSLGWVEISEHDLTPERSS 253
           + +G      + K R+ P           SD + K   FAVRSLGWVE++E DL P +SS
Sbjct: 383 EFEGATLRYASLKLRNAPHPDDDDSCSINSDPEAKC--FAVRSLGWVEMAEEDLAPGKSS 440

Query: 254 KAVNKCIVDLSLGRN 268
            AVN CI  LS  +N
Sbjct: 441 VAVNNCIRQLSYCKN 455

May modulate the internalization of beta-amyloid precursor protein.

Homo sapiens (taxid: 9606)

>sp|P46933|APBB1_RAT Amyloid beta A4 precursor protein-binding family B member 1 OS=Rattus norvegicus GN=Apbb1 PE=1 SV=3

 Score = 71.2 bits (173), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 59/192 (30%), Positives = 87/192 (45%), Gaps = 36/192 (18%)

Query: 83  SSVEAEEQLPPGWERHEDNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETVNND 142
           ++ E +  LP GW R +D  G YYWHI +GT Q +PP    G+  P         +   +
Sbjct: 248 NAFETDSDLPAGWMRVQDTSGTYYWHIPTGTTQWEPP----GRASP-----SQGNSPQEE 298

Query: 143 GPYYWHIKSGTIQRDPPEFTYGKNEP--KTPL---VKDAETNGSSSNSVLSMVTRSNTSS 197
               W       Q    E  + K+EP  + P+   +KD E             T   ++ 
Sbjct: 299 SQLTW--TGFAHQEGFEEGEFWKDEPSEEAPMELGLKDPEEG-----------TLPFSAQ 345

Query: 198 ALEDLDGKRKEDLAFKRRSYPARAESDTKDKLIRFAVRSLGWVEISEHDLTPERSSKAVN 257
           +L      ++E+   +R + P          +  FAVRSLGWVE++E +L P RSS AVN
Sbjct: 346 SLSPEPVPQEEENLPQRNANPG---------IKCFAVRSLGWVEMTEEELAPGRSSVAVN 396

Query: 258 KCIVDLSLGRNH 269
            CI  LS  +N+
Sbjct: 397 NCIRQLSYHKNN 408

Adapter protein that forms a transcriptionally active complex with the gamma-secretase-derived amyloid precursor protein (APP) intracellular domain. Plays a central role in the response to DNA damage by translocating to the nucleus and inducing apoptosis. May act by specifically recognizing and binding histone H2AX phosphorylated on 'Tyr-142' (H2AXY142ph) at double-strand breaks (DSBs), recruiting other pro-apoptosis factors such as MAPK8/JNK1. Required for histone H4 acetylation at double-strand breaks (DSBs). Its ability to specifically bind modified histones and chromatin modifying enzymes such as KAT5/TIP60, probably explains its trancription activation activity. Function in association with TSHZ3, SET and HDAC factors as a transcriptional repressor, that inhibits the expression of CASP4. Associates with chromatin in a region surrounding the CASP4 transcriptional start site(s).

Rattus norvegicus (taxid: 10116)

>sp|O00213|APBB1_HUMAN Amyloid beta A4 precursor protein-binding family B member 1 OS=Homo sapiens GN=APBB1 PE=1 SV=2

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/157 (31%), Positives = 70/157 (44%), Gaps = 40/157 (25%)

Query: 140 NNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETNGSSSNSVLSMV-TRSNTSSA 198
           +  G YYWHI +GT Q +PP    G+  P         + GSS      +  T       
Sbjct: 264 DTSGTYYWHIPTGTTQWEPP----GRASP---------SQGSSPQEESQLTWTGFAHGEG 310

Query: 199 LEDLDGKRKE-------DLAFKR-----RSYPARAES--------------DTKDKLIRF 232
            ED +  + E       +L  K       ++PA++ S              +T   +  F
Sbjct: 311 FEDGEFWKDEPSDEAPMELGLKEPEEGTLTFPAQSLSPEPLPQEEEKLPPRNTNPGIKCF 370

Query: 233 AVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLGRNH 269
           AVRSLGWVE++E +L P RSS AVN CI  LS  +N+
Sbjct: 371 AVRSLGWVEMTEEELAPGRSSVAVNNCIRQLSYHKNN 407

Transcription coregulator that can have both coactivator and corepressor functions. Adapter protein that forms a transcriptionally active complex with the gamma-secretase-derived amyloid precursor protein (APP) intracellular domain. Plays a central role in the response to DNA damage by translocating to the nucleus and inducing apoptosis. May act by specifically recognizing and binding histone H2AX phosphorylated on 'Tyr-142' (H2AXY142ph) at double-strand breaks (DSBs), recruiting other pro-apoptosis factors such as MAPK8/JNK1. Required for histone H4 acetylation at double-strand breaks (DSBs). Its ability to specifically bind modified histones and chromatin modifying enzymes such as KAT5/TIP60, probably explains its trancription activation activity. Function in association with TSHZ3, SET and HDAC factors as a transcriptional repressor, that inhibits the expression of CASP4. Associates with chromatin in a region surrounding the CASP4 transcriptional start site(s).

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	282
328706273	704	PREDICTED: amyloid beta A4 precursor pro	0.677	0.271	0.503	1e-50
328706271	706	PREDICTED: amyloid beta A4 precursor pro	0.677	0.270	0.503	1e-50
340710569	638	PREDICTED: amyloid beta A4 precursor pro	0.734	0.324	0.453	6e-47
345485884	784	PREDICTED: amyloid beta A4 precursor pro	0.734	0.264	0.447	7e-47
383853419	777	PREDICTED: amyloid beta A4 precursor pro	0.698	0.253	0.468	1e-46
332024801	580	Amyloid beta A4 precursor protein-bindin	0.705	0.343	0.459	1e-46
328789665	776	PREDICTED: amyloid beta A4 precursor pro	0.698	0.253	0.464	2e-46
307186079	602	Amyloid beta A4 precursor protein-bindin	0.666	0.312	0.476	2e-46
380026575	604	PREDICTED: uncharacterized protein LOC10	0.702	0.327	0.461	2e-46
350396513	776	PREDICTED: amyloid beta A4 precursor pro	0.705	0.256	0.459	2e-46

>gi|328706273|ref|XP_001944449.2| PREDICTED: amyloid beta A4 precursor protein-binding family B member 2-like isoform 1 [Acyrthosiphon pisum]

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 132/262 (50%), Positives = 156/262 (59%), Gaps = 71/262 (27%)

Query: 13  RSATYYEKPTPPRTLSLSEKASCTPAQGASIPHVPGDLNNDLYAVPVKLRGASPLPPLLA 72
           +     EK TPP TLSL+++   T      I H+ GDLNNDLYA+P+K            
Sbjct: 179 KGGNINEKRTPPNTLSLNKQKD-TSNINMDIQHIQGDLNNDLYAIPMKN----------- 226

Query: 73  DLSPSLSSTLSSVEAEEQLPPGWERHEDNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPL 132
                     +S E  ++LP GWE+HEDND                              
Sbjct: 227 ----------NSHECTDELPAGWEKHEDND------------------------------ 246

Query: 133 VKDAETVNNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAET--NGSSSNS--VLS 188
                     GPYYWHIKSGTIQR+PPE++ GKNEPKTPLVKDAE+  N   +N+  ++S
Sbjct: 247 ----------GPYYWHIKSGTIQREPPEYS-GKNEPKTPLVKDAESVLNSFQNNTGGLIS 295

Query: 189 MVTRSNTSSALEDL--DGKRKEDLAFKRRSYPARAESDTKDKLIRFAVRSLGWVEISEHD 246
            VTRS TSSALE+L     RKED+A+KRRSYPAR E++ K   IRFAVRSLGWVEI E D
Sbjct: 296 SVTRSTTSSALENLCYQKNRKEDMAYKRRSYPARIENENKG--IRFAVRSLGWVEICEDD 353

Query: 247 LTPERSSKAVNKCIVDLSLGRN 268
           LTPERSSKAVNKCIVDLSLGRN
Sbjct: 354 LTPERSSKAVNKCIVDLSLGRN 375

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328706271|ref|XP_003243049.1| PREDICTED: amyloid beta A4 precursor protein-binding family B member 2-like isoform 2 [Acyrthosiphon pisum]

 Score =  206 bits (523), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 132/262 (50%), Positives = 156/262 (59%), Gaps = 71/262 (27%)

Query: 13  RSATYYEKPTPPRTLSLSEKASCTPAQGASIPHVPGDLNNDLYAVPVKLRGASPLPPLLA 72
           +     EK TPP TLSL+++   T      I H+ GDLNNDLYA+P+K            
Sbjct: 179 KGGNINEKRTPPNTLSLNKQKD-TSNINMDIQHIQGDLNNDLYAIPMKN----------- 226

Query: 73  DLSPSLSSTLSSVEAEEQLPPGWERHEDNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPL 132
                     +S E  ++LP GWE+HEDND                              
Sbjct: 227 ----------NSHECTDELPAGWEKHEDND------------------------------ 246

Query: 133 VKDAETVNNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAET--NGSSSNS--VLS 188
                     GPYYWHIKSGTIQR+PPE++ GKNEPKTPLVKDAE+  N   +N+  ++S
Sbjct: 247 ----------GPYYWHIKSGTIQREPPEYS-GKNEPKTPLVKDAESVLNSFQNNTGGLIS 295

Query: 189 MVTRSNTSSALEDL--DGKRKEDLAFKRRSYPARAESDTKDKLIRFAVRSLGWVEISEHD 246
            VTRS TSSALE+L     RKED+A+KRRSYPAR E++ K   IRFAVRSLGWVEI E D
Sbjct: 296 SVTRSTTSSALENLCYQKNRKEDMAYKRRSYPARIENENKG--IRFAVRSLGWVEICEDD 353

Query: 247 LTPERSSKAVNKCIVDLSLGRN 268
           LTPERSSKAVNKCIVDLSLGRN
Sbjct: 354 LTPERSSKAVNKCIVDLSLGRN 375

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340710569|ref|XP_003393860.1| PREDICTED: amyloid beta A4 precursor protein-binding family B member 2-like isoform 1 [Bombus terrestris]

 Score =  193 bits (491), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 116/256 (45%), Positives = 147/256 (57%), Gaps = 49/256 (19%)

Query: 22  TPPRTLSLSEKASCTPAQGASIPHVPGDLNNDLYAVPVKLR-----GASPLPPLLADLSP 76
           T    L   EKA     +   +PHV G LN++LYAVPVK R       +          P
Sbjct: 108 TDNHNLGYCEKADNDTTEMGGVPHVEGGLNSELYAVPVKRRQPKDQKNNTTVQNNTQEKP 167

Query: 77  SLSSTLSSVEAEEQLPPGWERHEDNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDA 136
           +   T  S + +E LPPGW++HED +G                                 
Sbjct: 168 AEVDTTDSEDKDENLPPGWQKHEDENG--------------------------------- 194

Query: 137 ETVNNDGPYYWHIKSGTIQRDPPEFT-YGKNEPKTPLVKDAET--NGSSSNSVLSMVTRS 193
                  PYYWH+KSG IQR+PPE   + K E +  L+KD ++  N  + + +++ VTRS
Sbjct: 195 -------PYYWHVKSGNIQREPPEAPPHSKRESRRSLIKDNDSINNFHTLSGMVNTVTRS 247

Query: 194 NTSSAL-EDLDGKRKEDLAFKRRSYPARAESDTKDKLIRFAVRSLGWVEISEHDLTPERS 252
           NTSSAL ++L+ KRK +LA KRRSYPARA+S+ +DK IRFAVRSLGW EI+E DLTPERS
Sbjct: 248 NTSSALDQELENKRKVELALKRRSYPARADSEGRDKPIRFAVRSLGWTEIAEEDLTPERS 307

Query: 253 SKAVNKCIVDLSLGRN 268
           SKAVNKCIVDLSLGRN
Sbjct: 308 SKAVNKCIVDLSLGRN 323

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345485884|ref|XP_001603939.2| PREDICTED: amyloid beta A4 precursor protein-binding family B member 2-like [Nasonia vitripennis]

 Score =  193 bits (490), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 123/275 (44%), Positives = 155/275 (56%), Gaps = 68/275 (24%)

Query: 19  EKPTPPRTLSLSEKASCTPAQG----------------ASIPHVPGDLNNDLYA-VPVKL 61
           E+PT  +  S+S  ASC                       +PHV G +NNDLYA VPVK 
Sbjct: 238 ERPTSSQACSIS--ASCVDDDAIVGNYCEKPENVTTDMGGVPHVEG-VNNDLYANVPVKR 294

Query: 62  RG-----ASPLPPLLADLSPSLSSTLSSVEAEEQLPPGWERHEDNDGPYYWHIKSGTIQR 116
           R         L   + +   +  +++ S + +E LPPGWE+HED DG             
Sbjct: 295 RQHKDKLQQQLQNNVENPDKNDENSVDSEDKDENLPPGWEKHEDKDG------------- 341

Query: 117 DPPEFTYGKNEPKTPLVKDAETVNNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDA 176
                                      PYYWHIKSGTIQR+PPE    K E +   VKD 
Sbjct: 342 ---------------------------PYYWHIKSGTIQREPPEARISKLESRKSFVKDN 374

Query: 177 ET--NGSSSNSVLSMVTRSNTSSAL-EDLDGKRKEDLAFKRRSYPARAESDTKDKLIRFA 233
           ++  N +S   +++ VTRSNTSSAL ++L+ KR+E+LA KRRSYPARA+S+ ++K IRFA
Sbjct: 375 DSINNFNSLGGLVNTVTRSNTSSALDQELENKRREELALKRRSYPARADSEDRNKPIRFA 434

Query: 234 VRSLGWVEISEHDLTPERSSKAVNKCIVDLSLGRN 268
           VRSLGW EI+E DLTPERSSKAVNKCIVDLSLGRN
Sbjct: 435 VRSLGWTEIAEEDLTPERSSKAVNKCIVDLSLGRN 469

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383853419|ref|XP_003702220.1| PREDICTED: amyloid beta A4 precursor protein-binding family B member 2-like [Megachile rotundata]

 Score =  192 bits (489), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 117/250 (46%), Positives = 145/250 (58%), Gaps = 53/250 (21%)

Query: 30  SEKASCTPAQGASIPHVPGDLNNDLYAVPVKLR-------GASPLPPLLADLSPSLSSTL 82
            EKA         +PHV G LN++LYAVPVK R        AS      A   PS   T 
Sbjct: 255 CEKADNETTDMGGVPHVEGGLNSELYAVPVKRRQPKDQKNNASLQNN--AQEKPSEVDTN 312

Query: 83  SSVEAEEQLPPGWERHEDNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETVNND 142
              + +E LPPGW++HED +G                                       
Sbjct: 313 ECEDKDENLPPGWQKHEDENG--------------------------------------- 333

Query: 143 GPYYWHIKSGTIQRDPPE-FTYGKNEPKTPLVKDAET--NGSSSNSVLSMVTRSNTSSAL 199
            PYYWH+KSG IQR+PPE   + K E +  L+KD ++  N  + + +++ VTRSNTSSAL
Sbjct: 334 -PYYWHVKSGNIQREPPEALPHSKRESRRSLIKDNDSINNFHTLSGMVNTVTRSNTSSAL 392

Query: 200 -EDLDGKRKEDLAFKRRSYPARAESDTKDKLIRFAVRSLGWVEISEHDLTPERSSKAVNK 258
            ++L+ KRK +LA KRRSYPARA+S+ +DK IRFAVRSLGW EI+E DLTPERSSKAVNK
Sbjct: 393 DQELENKRKVELALKRRSYPARADSEGRDKPIRFAVRSLGWTEIAEEDLTPERSSKAVNK 452

Query: 259 CIVDLSLGRN 268
           CIVDLSLGRN
Sbjct: 453 CIVDLSLGRN 462

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024801|gb|EGI64989.1| Amyloid beta A4 precursor protein-binding family B member 2 [Acromyrmex echinatior]

 Score =  192 bits (488), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 114/248 (45%), Positives = 148/248 (59%), Gaps = 49/248 (19%)

Query: 30  SEKASCTPAQGASIPHVPGDLNNDLYAVPVKLRGASPLP--PLLADLSPSLSSTLSSVEA 87
            EK     A+   +PHV G LN++LYA+PVK R         +L + +    + + S ++
Sbjct: 60  CEKPDNETAEMGGVPHVEGGLNSELYAIPVKRRQPKDQKNNAILQNNTQEKPADMDSTDS 119

Query: 88  E---EQLPPGWERHEDNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETVNNDGP 144
           E   E LPPGW++HED +G                                        P
Sbjct: 120 EDKDENLPPGWQKHEDENG----------------------------------------P 139

Query: 145 YYWHIKSGTIQRDPPEF-TYGKNEPKTPLVKDAET--NGSSSNSVLSMVTRSNTSSAL-E 200
           YYWH+KSG IQR+PPE   + K E +  LVKD ++  N  + + +++ VTRSNTSSAL +
Sbjct: 140 YYWHVKSGNIQREPPEAPLHSKTEARRSLVKDNDSINNFHTLSGMVNTVTRSNTSSALDQ 199

Query: 201 DLDGKRKEDLAFKRRSYPARAESDTKDKLIRFAVRSLGWVEISEHDLTPERSSKAVNKCI 260
           +L+ KRK +LA KRRSYPARA+S+ +DK IRFAVRSLGW EI+E DLTPERSSKAVNKCI
Sbjct: 200 ELENKRKVELALKRRSYPARADSEGRDKPIRFAVRSLGWTEIAEEDLTPERSSKAVNKCI 259

Query: 261 VDLSLGRN 268
           VDLSLGRN
Sbjct: 260 VDLSLGRN 267

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328789665|ref|XP_394328.4| PREDICTED: amyloid beta A4 precursor protein-binding family B member 2-like [Apis mellifera]

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 116/250 (46%), Positives = 147/250 (58%), Gaps = 53/250 (21%)

Query: 30  SEKASCTPAQGASIPHVPGDLNNDLYAVPVKLR-------GASPLPPLLADLSPSLSSTL 82
            EKA     +   +PHV G LN++LYAVPVK R        AS      +   P+   T 
Sbjct: 254 CEKADNETTEMGGVPHVEGGLNSELYAVPVKRRQPKDQKNNASVQNN--SQEKPAEVDTT 311

Query: 83  SSVEAEEQLPPGWERHEDNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETVNND 142
            S + +E LPPGW++HED +G                                       
Sbjct: 312 DSEDKDENLPPGWQKHEDENG--------------------------------------- 332

Query: 143 GPYYWHIKSGTIQRDPPEFT-YGKNEPKTPLVKDAET--NGSSSNSVLSMVTRSNTSSAL 199
            PYYWH+KSG IQR+PPE   + K E +  L+KD ++  N  + + +++ VTRSNTSSAL
Sbjct: 333 -PYYWHVKSGNIQREPPEAPPHSKRESRRSLIKDNDSINNFHTLSGMVNTVTRSNTSSAL 391

Query: 200 -EDLDGKRKEDLAFKRRSYPARAESDTKDKLIRFAVRSLGWVEISEHDLTPERSSKAVNK 258
            ++L+ KRK +LA KRRSYPARA+S+ +DK IRFAVRSLGW EI+E DLTPERSSKAVNK
Sbjct: 392 DQELENKRKVELALKRRSYPARADSEGRDKPIRFAVRSLGWTEIAEEDLTPERSSKAVNK 451

Query: 259 CIVDLSLGRN 268
           CIVDLSLGRN
Sbjct: 452 CIVDLSLGRN 461

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186079|gb|EFN71811.1| Amyloid beta A4 precursor protein-binding family B member 2 [Camponotus floridanus]

 Score =  192 bits (487), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 113/237 (47%), Positives = 144/237 (60%), Gaps = 49/237 (20%)

Query: 41  ASIPHVPGDLNNDLYAVPVKLRGASPLP--PLLADLSPSLSSTLSSVEAE---EQLPPGW 95
             +PHV G LN++LYAVPVK R         +L + +    + + S ++E   E LPPGW
Sbjct: 93  GGVPHVEGGLNSELYAVPVKRRQPKDQKNNAILQNNTQEKPTDVDSTDSEDKDENLPPGW 152

Query: 96  ERHEDNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETVNNDGPYYWHIKSGTIQ 155
           ++HED +G                                        PYYWH+KSG IQ
Sbjct: 153 QKHEDENG----------------------------------------PYYWHVKSGNIQ 172

Query: 156 RDPPEF-TYGKNEPKTPLVKDAET--NGSSSNSVLSMVTRSNTSSAL-EDLDGKRKEDLA 211
           R+PPE   + K E +  LVKD ++  N  S + +++ VTRSNTSSAL ++L+ KRK +LA
Sbjct: 173 REPPEAPLHSKTEARRSLVKDNDSINNFHSLSGMVNTVTRSNTSSALDQELENKRKVELA 232

Query: 212 FKRRSYPARAESDTKDKLIRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLGRN 268
            KRRSYPARA+S+ +DK IRFAVRSLGW EI+E DLTPERSSKAVNKCIVDLSLGRN
Sbjct: 233 LKRRSYPARADSEGRDKPIRFAVRSLGWTEIAEEDLTPERSSKAVNKCIVDLSLGRN 289

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380026575|ref|XP_003697024.1| PREDICTED: uncharacterized protein LOC100872195 [Apis florea]

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 114/247 (46%), Positives = 145/247 (58%), Gaps = 49/247 (19%)

Query: 31  EKASCTPAQGASIPHVPGDLNNDLYAVPVKLR-----GASPLPPLLADLSPSLSSTLSSV 85
           EKA     +   +PHV G LN++LYAVPVK R       +          P+   T  S 
Sbjct: 257 EKADNETTEMGGVPHVEGGLNSELYAVPVKRRQPKDQKNNATLQNNGQEKPAEVDTTDSE 316

Query: 86  EAEEQLPPGWERHEDNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETVNNDGPY 145
           + +E LPPGW++HED +GP                                        Y
Sbjct: 317 DKDENLPPGWQKHEDENGP----------------------------------------Y 336

Query: 146 YWHIKSGTIQRDPPEFT-YGKNEPKTPLVKDAET--NGSSSNSVLSMVTRSNTSSAL-ED 201
           YWH+KSG IQR+PPE   + K E +  L+KD ++  N  + + +++ VTRSNTSSAL ++
Sbjct: 337 YWHVKSGNIQREPPEAPPHSKRESRRSLIKDNDSINNFHTLSGMVNTVTRSNTSSALDQE 396

Query: 202 LDGKRKEDLAFKRRSYPARAESDTKDKLIRFAVRSLGWVEISEHDLTPERSSKAVNKCIV 261
           L+ KRK +LA KRRSYPARA+S+ +DK IRFAVRSLGW EI+E DLTPERSSKAVNKCIV
Sbjct: 397 LENKRKVELALKRRSYPARADSEGRDKPIRFAVRSLGWTEIAEEDLTPERSSKAVNKCIV 456

Query: 262 DLSLGRN 268
           DLSLGRN
Sbjct: 457 DLSLGRN 463

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350396513|ref|XP_003484579.1| PREDICTED: amyloid beta A4 precursor protein-binding family B member 2-like [Bombus impatiens]

 Score =  191 bits (486), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 114/248 (45%), Positives = 145/248 (58%), Gaps = 49/248 (19%)

Query: 30  SEKASCTPAQGASIPHVPGDLNNDLYAVPVKLR-----GASPLPPLLADLSPSLSSTLSS 84
            EKA     +   +PHV G LN++LYAVPVK R       +          P+   T  S
Sbjct: 254 CEKADNETTEMGGVPHVEGGLNSELYAVPVKRRQPKDQKNNTTVQNNTQEKPAEVDTTDS 313

Query: 85  VEAEEQLPPGWERHEDNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETVNNDGP 144
            + +E LPPGW++HED +GP                                        
Sbjct: 314 EDKDENLPPGWQKHEDENGP---------------------------------------- 333

Query: 145 YYWHIKSGTIQRDPPEFT-YGKNEPKTPLVKDAET--NGSSSNSVLSMVTRSNTSSAL-E 200
           YYWH+KSG IQR+PPE   + K E +  L+KD ++  N  + + +++ VTRSNTSSAL +
Sbjct: 334 YYWHVKSGNIQREPPEAPPHSKRESRRSLIKDNDSINNFHTLSGMVNTVTRSNTSSALDQ 393

Query: 201 DLDGKRKEDLAFKRRSYPARAESDTKDKLIRFAVRSLGWVEISEHDLTPERSSKAVNKCI 260
           +L+ KRK +LA KRRSYPARA+S+ +DK IRFAVRSLGW EI+E DLTPERSSKAVNKCI
Sbjct: 394 ELENKRKVELALKRRSYPARADSEGRDKPIRFAVRSLGWTEIAEEDLTPERSSKAVNKCI 453

Query: 261 VDLSLGRN 268
           VDLSLGRN
Sbjct: 454 VDLSLGRN 461

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	282
RGD|1562438	638	Apbb2 "amyloid beta (A4) precu	0.570	0.252	0.329	1.3e-13
UNIPROTKB|I3LJX4	759	APBB2 "Uncharacterized protein	0.570	0.212	0.329	3.3e-13
UNIPROTKB|Q92870	758	APBB2 "Amyloid beta A4 precurs	0.570	0.212	0.329	5.2e-13
UNIPROTKB|F1MDE6	758	APBB2 "Uncharacterized protein	0.570	0.212	0.329	9.3e-13
MGI|MGI:108405	760	Apbb2 "amyloid beta (A4) precu	0.570	0.211	0.329	1.4e-12
WB|WBGene00001410	691	feh-1 [Caenorhabditis elegans	0.425	0.173	0.360	5.2e-12
UNIPROTKB|E2R1T9	762	APBB2 "Uncharacterized protein	0.570	0.211	0.324	1.2e-11
UNIPROTKB|Q9BYD4	214	Fe65L2 "Fe65L2 isoform 214 (I-	0.390	0.514	0.372	1.4e-11
UNIPROTKB|Q96Q18	245	Fe65L2 "Fe65L2 isoform 245" [H	0.390	0.448	0.372	4.2e-10
UNIPROTKB|F1NND3	686	APBB2 "Uncharacterized protein	0.578	0.237	0.305	1.3e-09

RGD|1562438 Apbb2 "amyloid beta (A4) precursor protein-binding, family B, member 2" [Rattus norvegicus (taxid:10116)]

 Score = 188 (71.2 bits), Expect = 1.3e-13, Sum P(2) = 1.3e-13
 Identities = 63/191 (32%), Positives = 88/191 (46%)

Query:    86 EAEEQLPPGWERHEDNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETVNNDGPY 145
             + +  LPPGW+R  D  G YYWHI +GT Q + P            +  D       G  
Sbjct:   165 QTDPDLPPGWKRVSDIAGTYYWHIPTGTTQWERP----------VSIPADLH-----GS- 208

Query:   146 YWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETNGSSSNSVLSMVTRS---NTSSALEDL 202
                 + G++    P  T  +NE K P    A  NG   NS +     +   N   +L++ 
Sbjct:   209 ----RKGSLSSVTPSPT-PENE-KQPWSDFAVLNGGKINSDIWKDLHAATVNPDPSLKEF 262

Query:   203 DGKRKEDLAFKRRSYPARAESDT----KDKLIR-FAVRSLGWVEISEHDLTPERSSKAVN 257
             +G      + K R+ P   + D+     D   + FAVRSLGWVE++E DL P +SS AVN
Sbjct:   263 EGATLRYASLKLRNAPHADDDDSCSINSDPEAKCFAVRSLGWVEMAEEDLAPGKSSVAVN 322

Query:   258 KCIVDLSLGRN 268
              CI  LS  +N
Sbjct:   323 NCIRQLSYCKN 333

GO:0001764 "neuron migration" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO

GO:0007050 "cell cycle arrest" evidence=ISO

GO:0007411 "axon guidance" evidence=ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0030198 "extracellular matrix organization" evidence=ISO

GO:0030308 "negative regulation of cell growth" evidence=ISO

GO:0043065 "positive regulation of apoptotic process" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0045749 "negative regulation of S phase of mitotic cell cycle" evidence=ISO

UNIPROTKB|I3LJX4 APBB2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 190 (71.9 bits), Expect = 3.3e-13, P = 3.3e-13
 Identities = 63/191 (32%), Positives = 89/191 (46%)

Query:    86 EAEEQLPPGWERHEDNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETVNNDGPY 145
             + +  LPPGW+R  D  G YYWHI +GT Q + P            +  D +     G  
Sbjct:   288 QTDPDLPPGWKRINDIAGTYYWHIPTGTTQWERP----------VSIPADLQ-----GS- 331

Query:   146 YWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETNGSSSNSVLSMVTRS---NTSSALEDL 202
                 + G++    P  T  +NE K P    A  NG   NS +     +   N   +L++ 
Sbjct:   332 ----RKGSLSSVTPSPT-PENE-KQPWSDFAVLNGGKINSDIWKDLHAATVNPDPSLKEF 385

Query:   203 DGKRKEDLAFKRRSYPARAESDT----KDKLIR-FAVRSLGWVEISEHDLTPERSSKAVN 257
             +G      + K R+ P   + D+     D   + FAVRSLGWVE++E DL P +SS AVN
Sbjct:   386 EGATLRYASLKLRNAPHADDDDSCSINSDPEAKCFAVRSLGWVEMAEEDLAPGKSSVAVN 445

Query:   258 KCIVDLSLGRN 268
              CI  LS  +N
Sbjct:   446 NCIRQLSYCKN 456

GO:0045749 "negative regulation of S phase of mitotic cell cycle" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0030198 "extracellular matrix organization" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

UNIPROTKB|Q92870 APBB2 "Amyloid beta A4 precursor protein-binding family B member 2" [Homo sapiens (taxid:9606)]

 Score = 189 (71.6 bits), Expect = 5.2e-13, P = 5.2e-13
 Identities = 63/191 (32%), Positives = 89/191 (46%)

Query:    86 EAEEQLPPGWERHEDNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETVNNDGPY 145
             + +  LPPGW+R  D  G YYWHI +GT Q + P            +  D +     G  
Sbjct:   287 QTDPDLPPGWKRVSDIAGTYYWHIPTGTTQWERP----------VSIPADLQ-----GS- 330

Query:   146 YWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETNGSSSNSVLSMVTRS---NTSSALEDL 202
                 + G++    P  T  +NE K P    A  NG   NS +     +   N   +L++ 
Sbjct:   331 ----RKGSLSSVTPSPT-PENE-KQPWSDFAVLNGGKINSDIWKDLHAATVNPDPSLKEF 384

Query:   203 DGKRKEDLAFKRRSYPARAESDT----KDKLIR-FAVRSLGWVEISEHDLTPERSSKAVN 257
             +G      + K R+ P   + D+     D   + FAVRSLGWVE++E DL P +SS AVN
Sbjct:   385 EGATLRYASLKLRNAPHPDDDDSCSINSDPEAKCFAVRSLGWVEMAEEDLAPGKSSVAVN 444

Query:   258 KCIVDLSLGRN 268
              CI  LS  +N
Sbjct:   445 NCIRQLSYCKN 455

GO:0005515 "protein binding" evidence=IPI

GO:0035556 "intracellular signal transduction" evidence=NAS

GO:0016020 "membrane" evidence=NAS

GO:0007050 "cell cycle arrest" evidence=ISS

GO:0045749 "negative regulation of S phase of mitotic cell cycle" evidence=ISS

GO:0030308 "negative regulation of cell growth" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0008134 "transcription factor binding" evidence=ISS

GO:0030426 "growth cone" evidence=ISS

GO:0030027 "lamellipodium" evidence=ISS

GO:0045202 "synapse" evidence=ISS

GO:0001540 "beta-amyloid binding" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

UNIPROTKB|F1MDE6 APBB2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 188 (71.2 bits), Expect = 9.3e-13, P = 9.3e-13
 Identities = 63/191 (32%), Positives = 87/191 (45%)

Query:    86 EAEEQLPPGWERHEDNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETVNNDGPY 145
             + +  LPPGW+R  D  G YYWHI +GT Q + P            +  D +     G  
Sbjct:   286 QTDPDLPPGWKRISDIAGTYYWHIPTGTTQWERP----------VSIPADLQ-----GSR 330

Query:   146 YWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETNGSSSNSVLSMVTRS---NTSSALEDL 202
                + S T    P      +NE K P    A  NG   NS +     +   N   +L++ 
Sbjct:   331 KGSLSSVTSSPTP------ENE-KQPWSDFAVLNGGKINSDIWKDLHAATVNPDPSLKEF 383

Query:   203 DGKRKEDLAFKRRSYPARAESDT----KDKLIR-FAVRSLGWVEISEHDLTPERSSKAVN 257
             +G      + K R+ P   + D+     D   + FAVRSLGWVE++E DL P +SS AVN
Sbjct:   384 EGATLRYASLKLRNAPHADDDDSCSINSDPEAKCFAVRSLGWVEMAEEDLAPGKSSVAVN 443

Query:   258 KCIVDLSLGRN 268
              CI  LS  +N
Sbjct:   444 NCIRQLSYCKN 454

GO:0045749 "negative regulation of S phase of mitotic cell cycle" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0030198 "extracellular matrix organization" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

MGI|MGI:108405 Apbb2 "amyloid beta (A4) precursor protein-binding, family B, member 2" [Mus musculus (taxid:10090)]

 Score = 187 (70.9 bits), Expect = 1.4e-12, P = 1.4e-12
 Identities = 63/191 (32%), Positives = 88/191 (46%)

Query:    86 EAEEQLPPGWERHEDNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETVNNDGPY 145
             + +  LPPGW+R  D  G YYWHI +GT Q + P            +  D       G  
Sbjct:   287 QTDPDLPPGWKRVNDIAGTYYWHIPTGTTQWERP----------VSIPADLH-----GS- 330

Query:   146 YWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETNGSSSNSVLSMVTRS---NTSSALEDL 202
                 + G++    P  T  +NE K P    A  NG   NS +     +   N   +L++ 
Sbjct:   331 ----RKGSLSSVTPSPT-PENE-KQPWSDFAVLNGGKINSDIWKDLHAATVNPDPSLKEF 384

Query:   203 DGKRKEDLAFKRRSYPARAESDT----KDKLIR-FAVRSLGWVEISEHDLTPERSSKAVN 257
             +G      + K R+ P   + D+     D   + FAVRSLGWVE++E DL P +SS AVN
Sbjct:   385 EGATLRYASLKLRNAPHGDDDDSCSINSDPEAKCFAVRSLGWVEMAEEDLAPGKSSVAVN 444

Query:   258 KCIVDLSLGRN 268
              CI  LS  +N
Sbjct:   445 NCIRQLSYCKN 455

GO:0001764 "neuron migration" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IDA

GO:0007050 "cell cycle arrest" evidence=IDA

GO:0007411 "axon guidance" evidence=IGI

GO:0008134 "transcription factor binding" evidence=IDA

GO:0030048 "actin filament-based movement" evidence=NAS

GO:0030198 "extracellular matrix organization" evidence=IGI

GO:0030308 "negative regulation of cell growth" evidence=IDA

GO:0035035 "histone acetyltransferase binding" evidence=NAS

GO:0043065 "positive regulation of apoptotic process" evidence=IDA

GO:0043066 "negative regulation of apoptotic process" evidence=IGI

GO:0045749 "negative regulation of S phase of mitotic cell cycle" evidence=IDA

GO:0050821 "protein stabilization" evidence=NAS

WB|WBGene00001410 feh-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 183 (69.5 bits), Expect = 5.2e-12, P = 5.2e-12
 Identities = 49/136 (36%), Positives = 74/136 (54%)

Query:   145 YYWHIKSGTIQRDPP----EFTYGKNEPKTPL-----VKDAETNGSSSN-SVLSMVTRSN 194
             YYWH+ SGTIQR PP    + T  ++    PL       + ET   +    ++ +  +  
Sbjct:   280 YYWHVDSGTIQRQPPPPVRDVTPARSPSPPPLPPPITTANRETQADAPPPQIIQLPPQQP 339

Query:   195 T--SSALEDLDGKRK---EDLAFKRRSYPARAES-DTKDKLIRFAVRSLGWVEISEHDLT 248
                  A +    KR+   ++++ +     A  E+ DT  K +RFAVRSLGW +ISE +LT
Sbjct:   340 VIEEHAFKQTTTKRRIEQDEMSEREIEDVAMIENGDTYHKPVRFAVRSLGWTDISEDELT 399

Query:   249 PERSSKAVNKCIVDLS 264
              E+SS+AVN+ IVDL+
Sbjct:   400 AEKSSRAVNRAIVDLT 415

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0007631 "feeding behavior" evidence=IMP

GO:0005884 "actin filament" evidence=IDA

GO:0001540 "beta-amyloid binding" evidence=IDA

UNIPROTKB|E2R1T9 APBB2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 181 (68.8 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 62/191 (32%), Positives = 86/191 (45%)

Query:    86 EAEEQLPPGWERHEDNDGPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETVNNDGPY 145
             + +  LPPGW+R  D  G YYWHI +GT Q + P            +  D       G  
Sbjct:   289 QTDPDLPPGWKRINDIAGTYYWHIPTGTTQWERP----------VSIPADLH-----GSR 333

Query:   146 YWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETNGSSSNSVLSMVTRS---NTSSALEDL 202
                + S T    P      ++E K P    A  NG   NS +     +   N   +L++ 
Sbjct:   334 KGSLSSVTSSPTP------EHE-KQPWSDFAVLNGGKINSDIWKDLHAATVNPDPSLKEF 386

Query:   203 DGKRKEDLAFKRRSYPARAESDT----KDKLIR-FAVRSLGWVEISEHDLTPERSSKAVN 257
             +G      + K R+ P   + D+     D   + FAVRSLGWVE++E DL P +SS AVN
Sbjct:   387 EGATLRYASLKLRNAPHADDDDSCSINSDPEAKCFAVRSLGWVEMAEEDLAPGKSSVAVN 446

Query:   258 KCIVDLSLGRN 268
              CI  LS  +N
Sbjct:   447 NCIRQLSYCKN 457

GO:0045749 "negative regulation of S phase of mitotic cell cycle" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0030198 "extracellular matrix organization" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001764 "neuron migration" evidence=IEA

UNIPROTKB|Q9BYD4 Fe65L2 "Fe65L2 isoform 214 (I-214)" [Homo sapiens (taxid:9606)]

 Score = 159 (61.0 bits), Expect = 1.4e-11, P = 1.4e-11
 Identities = 48/129 (37%), Positives = 64/129 (49%)

Query:   143 GPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETNGSSSNSVLSM-VTRSNTSSALED 201
             G YYWH+ SG+ Q   P +  G          DAE  G+ +  +  +   +  + S+LE 
Sbjct:    43 GTYYWHVPSGSTQWQRPTWELG----------DAEDPGTGTEGIWGLRPPKGRSFSSLES 92

Query:   202 -LDGKRKEDLA-FKRRSYPARAESDTKDKLIRFAVRSLGWVEISEHDLTPERSSKAVNKC 259
              LD  R   L+ +   SY    E   K     FAVRSLGWVE+ E DL P +SS AVN C
Sbjct:    93 SLD--RSNSLSWYGGESYIQSMEPGAKC----FAVRSLGWVEVPEEDLAPGKSSIAVNNC 146

Query:   260 IVDLSLGRN 268
             I  L+  R+
Sbjct:   147 IQQLAQTRS 155

GO:0005515 "protein binding" evidence=IPI

GO:0035556 "intracellular signal transduction" evidence=NAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0015629 "actin cytoskeleton" evidence=IDA

UNIPROTKB|Q96Q18 Fe65L2 "Fe65L2 isoform 245" [Homo sapiens (taxid:9606)]

 Score = 159 (61.0 bits), Expect = 4.2e-10, P = 4.2e-10
 Identities = 48/129 (37%), Positives = 64/129 (49%)

Query:   143 GPYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETNGSSSNSVLSM-VTRSNTSSALED 201
             G YYWH+ SG+ Q   P +  G          DAE  G+ +  +  +   +  + S+LE 
Sbjct:    43 GTYYWHVPSGSTQWQRPTWELG----------DAEDPGTGTEGIWGLRPPKGRSFSSLES 92

Query:   202 -LDGKRKEDLA-FKRRSYPARAESDTKDKLIRFAVRSLGWVEISEHDLTPERSSKAVNKC 259
              LD  R   L+ +   SY    E   K     FAVRSLGWVE+ E DL P +SS AVN C
Sbjct:    93 SLD--RSNSLSWYGGESYIQSMEPGAKC----FAVRSLGWVEVPEEDLAPGKSSIAVNNC 146

Query:   260 IVDLSLGRN 268
             I  L+  R+
Sbjct:   147 IQQLAQTRS 155

GO:0005737 "cytoplasm" evidence=IDA

GO:0015629 "actin cytoskeleton" evidence=IDA

UNIPROTKB|F1NND3 APBB2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 165 (63.1 bits), Expect = 1.3e-09, P = 1.3e-09
 Identities = 58/190 (30%), Positives = 86/190 (45%)

Query:    86 EAEEQLPPGWERHEDNDGPYYWHIKSGTIQ-RDP---PEFTYGKNEPKTPLVKDAETVNN 141
             + +  LPPGW++  D  G YYWHI +GT Q + P   P    G  +     +  + T   
Sbjct:   209 QTDPDLPPGWKKINDIAGIYYWHIPTGTTQWQRPVSVPTDLQGSRKGSLGSITPSPTPET 268

Query:   142 DG-PY--YWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETNGSSSNSVLSMVTRSNTSSA 198
             +  P+  +  +  G I  D  +  +       P +K+ E  G++       ++R+   S 
Sbjct:   269 EKQPWSDFAVLNGGKINSDIWKDLHAATVNPDPSLKEFE--GATLRYASLKLSRNAPQS- 325

Query:   199 LEDLDGKRKEDLAFKRRSYPARAESDTKDKLIRFAVRSLGWVEISEHDLTPERSSKAVNK 258
              +D D                   SD + K   FAVRSLGWVE++E DL P +SS AVN 
Sbjct:   326 -DDDDS--------------CSINSDPEAKC--FAVRSLGWVEMAEEDLAPGKSSVAVNN 368

Query:   259 CIVDLSLGRN 268
             CI  LS  +N
Sbjct:   369 CIRQLSYCKN 378

GO:0001764 "neuron migration" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007050 "cell cycle arrest" evidence=IEA

GO:0007411 "axon guidance" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0030198 "extracellular matrix organization" evidence=IEA

GO:0030308 "negative regulation of cell growth" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0045749 "negative regulation of S phase of mitotic cell cycle" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	282
cd01272	138	cd01272, PTB1_Fe65, Fe65 N-terminal Phosphotyrosin	3e-21
pfam00397	30	pfam00397, WW, WW domain	2e-04
cd00201	31	cd00201, WW, Two conserved tryptophans domain; als	2e-04
smart00456	33	smart00456, WW, Domain with 2 conserved Trp (W) re	7e-04

>gnl|CDD|241302 cd01272, PTB1_Fe65, Fe65 N-terminal Phosphotyrosine-binding (PTB) domain

 Score = 86.6 bits (215), Expect = 3e-21
 Identities = 27/39 (69%), Positives = 30/39 (76%)

Query: 230 IRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLGRN 268
            RFAVRSLGWVE++E DL P +SS AVN CI  LS GRN
Sbjct: 2   KRFAVRSLGWVEMAEEDLAPGKSSVAVNNCIRQLSYGRN 40

The neuronal adaptor protein Fe65 is involved in brain development, Alzheimer disease amyloid precursor protein (APP) signaling, and proteolytic processing of APP. It contains three protein-protein interaction domains, one WW domain, and a unique tandem array of phosphotyrosine-binding (PTB) domains. The N-terminal PTB domain was shown to interact with a variety of proteins, including the low density lipoprotein receptor-related protein (LRP-1), the ApoEr2 receptor, and the histone acetyltransferase Tip60. PTB domains have a common PH-like fold and are found in various eukaryotic signaling molecules. This domain was initially shown to binds peptides with a NPXY motif with differing requirements for phosphorylation of the tyrosine, although more recent studies have found that some types of PTB domains can bind to peptides lack tyrosine residues altogether. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. PTB domains are classified into three groups: phosphotyrosine-dependent Shc-like, phosphotyrosine-dependent IRS-like, and phosphotyrosine-independent Dab-like PTB domains. This cd is part of the Dab-like subgroup. Length = 138

>gnl|CDD|215899 pfam00397, WW, WW domain

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)

Query: 91  LPPGWERHEDNDG-PYYWHIKSGTIQRDPP 119
           LPPGWE   D DG PYY++  +G  Q + P
Sbjct: 1   LPPGWEERTDTDGRPYYYNHNTGETQWERP 30

The WW domain is a protein module with two highly conserved tryptophans that binds proline-rich peptide motifs in vitro. Length = 30

>gnl|CDD|238122 cd00201, WW, Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs

 Score = 37.1 bits (87), Expect = 2e-04
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)

Query: 92  PPGWERHEDNDG-PYYWHIKSGTIQRDPPE 120
           PPGWE   D DG  YY++  +   Q + P 
Sbjct: 1   PPGWEERWDPDGRVYYYNHNTKETQWEDPR 30

Length = 31

>gnl|CDD|197736 smart00456, WW, Domain with 2 conserved Trp (W) residues

 Score = 36.0 bits (84), Expect = 7e-04
 Identities = 14/31 (45%), Positives = 20/31 (64%), Gaps = 1/31 (3%)

Query: 91  LPPGWERHEDNDG-PYYWHIKSGTIQRDPPE 120
           LPPGWE  +D DG PYY++ ++   Q + P 
Sbjct: 2   LPPGWEERKDPDGRPYYYNHETKETQWEKPR 32

Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides. Length = 33

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	282
cd01272	138	FE65_N Fe65 Phosphotyrosine-binding (PTB) domain.	99.96
PF00397	31	WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp	98.86
smart00456	32	WW Domain with 2 conserved Trp (W) residues. Also	98.67
cd01216	123	Fe65 Fe65 Phosphotyrosine-binding (PTB) domain, ph	98.59
KOG3259|consensus	163		98.5
cd00201	31	WW Two conserved tryptophans domain; also known as	98.45
KOG1891|consensus	271		97.16
cd01267	132	CED6_AIDA1b Phosphotyrosine-binding (PTB) domain,	94.37
cd00934	123	PTB Phosphotyrosine-binding (PTB) domain. Phosphot	94.32
PF00640	140	PID: Phosphotyrosine interaction domain (PTB/PID)	94.16
KOG1891|consensus	271		93.44
smart00462	134	PTB Phosphotyrosine-binding domain, phosphotyrosin	92.13
KOG4334|consensus	650		84.61
COG5104	590	PRP40 Splicing factor [RNA processing and modifica	84.02

>cd01272 FE65_N Fe65 Phosphotyrosine-binding (PTB) domain

Probab=99.96  E-value=1.8e-30  Score=219.61  Aligned_cols=48  Identities=75%  Similarity=1.087  Sum_probs=46.6

Q ss_pred             ceEeEEeeeceeeeccccCCCcchhHHHHHHHHHhhcccCCCcccccc
Q psy3534         229 LIRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLGRNHHSTIYFQ  276 (282)
Q Consensus       229 ~~~FAVRSLGWVEmaEEDLaPGKSSvAVNnCIrQLSy~RnDirD~V~~  276 (282)
                      ++||||||||||||+||||||||||+|||||||||||||||++|+||.
T Consensus         1 ~~~faVrslGWve~~Eedl~p~~sS~avn~cI~~Ls~~~~d~~d~~g~   48 (138)
T cd01272           1 PIRFAVRSLGWVEIAEEDLTPEKSSKAVNKCIVDLSLGRNDMLDVVGR   48 (138)
T ss_pred             CcceeeeccceEEcchhhcCCcccHHHHHHHHHHHhccccccccCcCc
Confidence            579999999999999999999999999999999999999999999985

Fe65 Phosphotyrosine-binding (PTB) domain. Fe65 is an amyloid beta A4 precursor protein-binding. It contains an N-terminal WW domain followed by two PTB domains. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.

>PF00397 WW: WW domain; InterPro: IPR001202 Synonym(s): Rsp5 or WWP domain The WW domain is a short conserved region in a number of unrelated proteins, which folds as a stable, triple stranded beta-sheet

Probab=98.86  E-value=7.9e-10  Score=71.81  Aligned_cols=29  Identities=48%  Similarity=1.068  Sum_probs=26.3

Q ss_pred             CCCCccccccC-Cc-CEEEEeeCCCcccCCC
Q psy3534          91 LPPGWERHEDN-DG-PYYWHIKSGTIQRDPP  119 (282)
Q Consensus        91 LPPGWer~sds-~G-~YYwhv~Tg~tQWe~P  119 (282)
                      ||+||++..+. +| .||||+.||+|||++|
T Consensus         1 LP~gW~~~~~~~~g~~YY~N~~t~~s~W~~P   31 (31)
T PF00397_consen    1 LPPGWEEYFDPDSGRPYYYNHETGESQWERP   31 (31)
T ss_dssp             SSTTEEEEEETTTSEEEEEETTTTEEESSST
T ss_pred             CCcCCEEEEcCCCCCEEEEeCCCCCEEeCCC
Confidence            89999977764 58 9999999999999998

This short domain of approximately 40 amino acids, may be repeated up to four times in some proteins [, , , ]. The name WW or WWP derives from the presence of two signature tryptophan residues that are spaced 20-23 amino acids apart and are present in most WW domains known to date, as well as that of a conserved Pro. The WW domain binds to proteins with particular proline-motifs, [AP]-P-P-[AP]-Y, and/or phosphoserine- phosphothreonine-containing motifs [, ]. It is frequently associated with other domains typical for proteins in signal transduction processes. A large variety of proteins containing the WW domain are known. These include; dystrophin, a multidomain cytoskeletal protein; utrophin, a dystrophin-like protein of unknown function; vertebrate YAP protein, substrate of an unknown serine kinase; Mus musculus (Mouse) NEDD-4, involved in the embryonic development and differentiation of the central nervous system; Saccharomyces cerevisiae (Baker's yeast) RSP5, similar to NEDD-4 in its molecular organisation; Rattus norvegicus (Rat) FE65, a transcription-factor activator expressed preferentially in liver; Nicotiana tabacum (Common tobacco) DB10 protein, amongst others.; GO: 0005515 protein binding; PDB: 2JXW_A 2DK1_A 2JOC_A 2JO9_A 1YIU_A 1O6W_A 2JMF_A 1TK7_A 2KYK_A 2L5F_A ....

>smart00456 WW Domain with 2 conserved Trp (W) residues

Probab=98.67  E-value=1.3e-08  Score=65.08  Aligned_cols=30  Identities=47%  Similarity=1.102  Sum_probs=28.1

Q ss_pred             CCCCccccccCCc-CEEEEeeCCCcccCCCC
Q psy3534          91 LPPGWERHEDNDG-PYYWHIKSGTIQRDPPE  120 (282)
Q Consensus        91 LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~  120 (282)
                      ||+||++..+..| .||+|+.|+++||++|.
T Consensus         1 lp~gW~~~~~~~g~~yy~n~~t~~s~W~~P~   31 (32)
T smart00456        1 LPPGWEERKDPDGRPYYYNHETKETQWEKPR   31 (32)
T ss_pred             CCCCCEEEECCCCCEEEEECCCCCEEcCCCC
Confidence            7999998888889 99999999999999996

Also known as the WWP or rsp5 domain. Binds proline-rich polypeptides.

>cd01216 Fe65 Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain

Probab=98.59  E-value=4.4e-08  Score=81.26  Aligned_cols=35  Identities=60%  Similarity=0.809  Sum_probs=32.3

Q ss_pred             ceEeEEeeeceeeeccccCCCcchhHHHHHHHHHhhcccC
Q psy3534         229 LIRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLGRN  268 (282)
Q Consensus       229 ~~~FAVRSLGWVEmaEEDLaPGKSSvAVNnCIrQLSy~Rn  268 (282)
                      +++|+||+||||||+|.+     ++.+||+||++|.+.|+
T Consensus         1 ~~~F~VkyLG~~eV~~~~-----g~~vv~~ai~~L~~~~~   35 (123)
T cd01216           1 PKVFAVRSLGWVEVAEED-----GSEALNKAIDDLSSCSN   35 (123)
T ss_pred             CcEEEEEeeeeEEECCCC-----CHHHHHHHHHHHHhccc
Confidence            479999999999999987     99999999999998776

Fe65 Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. Fe65 is an amyloid beta A4 precursor (APP) protein-binding. It contains an N-terminal WW domain followed by two PTB domains. The C-terminal PTB domain is responsible for APP binding. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.

>KOG3259|consensus

Probab=98.50  E-value=4.6e-08  Score=85.44  Aligned_cols=37  Identities=43%  Similarity=0.882  Sum_probs=33.7

Q ss_pred             CCCCCCCCcc-ccccCCc-CEEEEeeCCCcccCCCCCCC
Q psy3534          87 AEEQLPPGWE-RHEDNDG-PYYWHIKSGTIQRDPPEFTY  123 (282)
Q Consensus        87 ~~~~LPPGWe-r~sds~G-~YYwhv~Tg~tQWe~P~~~~  123 (282)
                      ....||+||+ |+++++| .||||..|+.+|||+|+...
T Consensus         3 ~~~~LP~~Wekr~Srs~gr~YyfN~~T~~SqWe~P~~t~   41 (163)
T KOG3259|consen    3 DEEKLPPGWEKRMSRSSGRPYYFNTETNESQWERPSGTS   41 (163)
T ss_pred             ccccCCchhheeccccCCCcceeccccchhhccCCCccc
Confidence            3567999999 9999999 99999999999999998764

>cd00201 WW Two conserved tryptophans domain; also known as the WWP or rsp5 domain; around 40 amino acids; functions as an interaction module in a diverse set of signalling proteins; binds specific proline-rich sequences but at low affinities compared to other peptide recognition proteins such as antibodies and receptors; WW domains have a single groove formed by a conserved Trp and Tyr which recognizes a pair of residues of the sequence X-Pro; variable loops and neighboring domains confer specificity in this domain; there are five distinct groups based on binding: 1) PPXY motifs 2) the PPLP motif; 3) PGM motifs; 4) PSP or PTP motifs; 5) PR motifs

Probab=98.45  E-value=1.2e-07  Score=59.60  Aligned_cols=29  Identities=41%  Similarity=0.918  Sum_probs=27.2

Q ss_pred             CCCccccccCCc-CEEEEeeCCCcccCCCC
Q psy3534          92 PPGWERHEDNDG-PYYWHIKSGTIQRDPPE  120 (282)
Q Consensus        92 PPGWer~sds~G-~YYwhv~Tg~tQWe~P~  120 (282)
                      |+||+++.+..| .||+|+.|+++||++|.
T Consensus         1 p~~W~~~~~~~g~~yy~n~~t~~s~W~~P~   30 (31)
T cd00201           1 PPGWEERWDPDGRVYYYNHNTKETQWEDPR   30 (31)
T ss_pred             CCCCEEEECCCCCEEEEECCCCCEeCCCCC
Confidence            789998888889 99999999999999996

>KOG1891|consensus

Probab=97.16  E-value=0.00022  Score=66.59  Aligned_cols=45  Identities=29%  Similarity=0.511  Sum_probs=35.2

Q ss_pred             CCccccCCCCCCCCCCCCCccccccC-CcCEEEEeeCCCcccCCCCCCC
Q psy3534          76 PSLSSTLSSVEAEEQLPPGWERHEDN-DGPYYWHIKSGTIQRDPPEFTY  123 (282)
Q Consensus        76 d~iw~~~~~~~~~~~LPPGWer~sds-~G~YYwhv~Tg~tQWe~P~~~~  123 (282)
                      -.-|+-   -..-..|||||+|+.++ .|+||.|..+|++|+++|..++
T Consensus       117 tTHW~H---PlerEgLppGW~rv~s~e~GtyY~~~~~k~tQy~HPc~~s  162 (271)
T KOG1891|consen  117 TTHWVH---PLEREGLPPGWKRVFSPEKGTYYYHEEMKRTQYEHPCISS  162 (271)
T ss_pred             cccccC---hhhhccCCcchhhccccccceeeeecccchhhhcCCCCCC
Confidence            345665   23445699999977655 6799999999999999998764

>cd01267 CED6_AIDA1b Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain

Probab=94.37  E-value=0.049  Score=44.87  Aligned_cols=33  Identities=21%  Similarity=0.442  Sum_probs=28.8

Q ss_pred             eEeEEeeeceeeeccccCCCcchhHHHHHHHHHhhccc
Q psy3534         230 IRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLGR  267 (282)
Q Consensus       230 ~~FAVRSLGWVEmaEEDLaPGKSSvAVNnCIrQLSy~R  267 (282)
                      +.|.|+.|||+|+.|.     |++.++..||+.|-..+
T Consensus         2 v~f~vkyLGs~~V~~~-----~g~~~~~~Ai~~l~~~~   34 (132)
T cd01267           2 VVYRAKFLGSLEIGKL-----KGTEVAREAIRKLKFSR   34 (132)
T ss_pred             cEEEEEEEEEEEecCC-----CChHHHHHHHHHHHhhh
Confidence            5799999999999884     78999999999996544

Phosphotyrosine-binding (PTB) domain, phosphotyrosine-interaction (PI) domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.

>cd00934 PTB Phosphotyrosine-binding (PTB) domain

Probab=94.32  E-value=0.053  Score=42.15  Aligned_cols=34  Identities=38%  Similarity=0.547  Sum_probs=30.1

Q ss_pred             eEeEEeeeceeeeccccCCCcchhHHHHHHHHHhhcccC
Q psy3534         230 IRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLGRN  268 (282)
Q Consensus       230 ~~FAVRSLGWVEmaEEDLaPGKSSvAVNnCIrQLSy~Rn  268 (282)
                      +.|.|+.||++++.+     .++.-.+++||+.|...++
T Consensus         2 ~~f~v~ylG~~~v~~-----~~g~~~~~~ai~~l~~~~~   35 (123)
T cd00934           2 ISFNVKYLGSVEVPE-----PRGSQVVRDAIRKLKAASK   35 (123)
T ss_pred             cEEEEEEEEEEEecC-----CCCchHHHHHHHHHHHhhh
Confidence            579999999999999     6788999999999986554

Phosphotyrosine-binding (PTB) domain; PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. The PTB domain of SHC binds to a NPXpY sequence. More recent studies have found that some types of PTB domains such as the neuronal protein X11 and in the cell-fate determinant protein Numb can bind to peptides which are not tyrosine phosphorylated; whereas, other PTB domains can bind motifs lacking tyrosine residues altogether.

>PF00640 PID: Phosphotyrosine interaction domain (PTB/PID) A page on PI domains

Probab=94.16  E-value=0.054  Score=43.13  Aligned_cols=35  Identities=34%  Similarity=0.413  Sum_probs=30.7

Q ss_pred             eEEeeeceeeeccc-cCCCcchhHHHHHHHHHhhcc
Q psy3534         232 FAVRSLGWVEISEH-DLTPERSSKAVNKCIVDLSLG  266 (282)
Q Consensus       232 FAVRSLGWVEmaEE-DLaPGKSSvAVNnCIrQLSy~  266 (282)
                      |.|+.||.|||.+. ++..++-.-.|.+||+.|...
T Consensus         1 F~vkYLGs~~V~~~~~~~~~~g~~~v~~ai~~~~~~   36 (140)
T PF00640_consen    1 FEVKYLGSVEVSSSRRGDKSRGSDVVREAIQRLKAE   36 (140)
T ss_dssp             EEEEEEEEEEESSSSSTCHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEEEEEECCccCCCcchhHHHHHHHHHHHHhh
Confidence            89999999999998 666667788999999998865

; InterPro: IPR006020 The PI domain has a similar structure to the insulin receptor substrate-1 PTB domain, a 7-stranded beta-sandwich, capped by a C-terminal helix. However, the PI domain contains an additional short N-terminal helix and a large insertion between strands 1 and 2, which forms a helix and 2 long connecting loops. The substrate peptide fits into a surface cleft formed from the C-terminal helix and strand 5 [].; GO: 0005515 protein binding; PDB: 1WGU_A 2YT0_A 2YT1_A 2YSZ_A 2ROZ_B 3SO6_A 2DYQ_A 1AQC_A 1X11_B 1WJ1_A ....

>KOG1891|consensus

Probab=93.44  E-value=0.057  Score=50.84  Aligned_cols=66  Identities=24%  Similarity=0.288  Sum_probs=47.0

Q ss_pred             CCccccccccccCCCCCCc------ccccCCCCccccCCCCCCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534          51 NNDLYAVPVKLRGASPLPP------LLADLSPSLSSTLSSVEAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEF  121 (282)
Q Consensus        51 ~~~lya~p~k~~~~~~~~~------~~~n~~d~iw~~~~~~~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~  121 (282)
                      +.+++++|-..+.+.-.++      .|++|--.     .+-..|.+|||||-.--...| .||-.+.+.+|-|-+|-.
T Consensus        53 ~~~~l~~p~~~~~~~~~~~g~~a~~slq~~~s~-----~~~sedlPLPpgWav~~T~~grkYYIDHn~~tTHW~HPle  125 (271)
T KOG1891|consen   53 IEKRLASPQPPRFQSLQTLGSEALMSLQQYRSS-----CDCSEDLPLPPGWAVEFTTEGRKYYIDHNNRTTHWVHPLE  125 (271)
T ss_pred             hhhHhcCCCCCCcchhhccchhhhhhhhhcccc-----CCCcccCCCCCCcceeeEecCceeEeecCCCcccccChhh
Confidence            3566677766665543332      24444211     224678899999998888889 999999999999999954

>smart00462 PTB Phosphotyrosine-binding domain, phosphotyrosine-interaction (PI) domain

Probab=92.13  E-value=0.21  Score=39.71  Aligned_cols=32  Identities=34%  Similarity=0.472  Sum_probs=28.6

Q ss_pred             ceEeEEeeeceeeeccccCCCcchhHHHHHHHHHhhc
Q psy3534         229 LIRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSL  265 (282)
Q Consensus       229 ~~~FAVRSLGWVEmaEEDLaPGKSSvAVNnCIrQLSy  265 (282)
                      ..+|.|+.||++++.+.     ++.-.++.||++|..
T Consensus         3 ~~~f~v~YLGs~~v~~~-----~g~~~~~~ai~~l~~   34 (134)
T smart00462        3 GVSFRVKYLGSVEVPEA-----RGLQVVQEAIRKLRA   34 (134)
T ss_pred             ceEEEEEEEEEEEecCC-----CCcHHHHHHHHHHHH
Confidence            46899999999999986     488899999999986

PTB/PI domain structure similar to those of pleckstrin homology (PH) and IRS-1-like PTB domains.

>KOG4334|consensus

Probab=84.61  E-value=0.7  Score=47.87  Aligned_cols=37  Identities=32%  Similarity=0.689  Sum_probs=33.8

Q ss_pred             CCCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534          85 VEAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEF  121 (282)
Q Consensus        85 ~~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~  121 (282)
                      ++....||.||-.++-.+| .-|+|-.|+-..|.+|--
T Consensus       149 l~~~epLPeGW~~i~HnSGmPvylHr~tRVvt~SrPYf  186 (650)
T KOG4334|consen  149 LDKSEPLPEGWTVISHNSGMPVYLHRFTRVVTHSRPYF  186 (650)
T ss_pred             CCCCCcCCCceEEEeecCCCceEEeeeeeeEeccCcee
Confidence            5677889999999999999 999999999999999954

>COG5104 PRP40 Splicing factor [RNA processing and modification]

Probab=84.02  E-value=0.47  Score=48.55  Aligned_cols=29  Identities=28%  Similarity=0.668  Sum_probs=26.2

Q ss_pred             CCccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534          93 PGWERHEDNDG-PYYWHIKSGTIQRDPPEF  121 (282)
Q Consensus        93 PGWer~sds~G-~YYwhv~Tg~tQWe~P~~  121 (282)
                      .-|+.+.+.+| +||+|..||.+.|++|..
T Consensus        15 s~w~e~k~~dgRiYYYN~~T~kS~weKPke   44 (590)
T COG5104          15 SEWEELKAPDGRIYYYNKRTGKSSWEKPKE   44 (590)
T ss_pred             HHHHHhhCCCCceEEEecccccccccChHH
Confidence            34999999999 999999999999999943

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	282
3d8d_A	148	Crystal Structure Of The Human Fe65-Ptb1 Domain Len		5e-07
2e45_A	55	Solution Structure Of Fe65 Ww Domain Length = 55		8e-05
2ho2_A	38	Structure Of Human Fe65-Ww Domain In Complex With H		3e-04

>pdb|3D8D|A Chain A, Crystal Structure Of The Human Fe65-Ptb1 Domain Length = 148

Iteration: 1
 Score = 51.6 bits (122), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/38 (63%), Positives = 29/38 (76%)
Query: 232 FAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLGRNH 269
           FAVRSLGWVE++E +L P RSS AVN CI  LS  +N+
Sbjct: 5   FAVRSLGWVEMTEEELAPGRSSVAVNNCIRQLSYHKNN 42

>pdb|2E45|A Chain A, Solution Structure Of Fe65 Ww Domain Length = 55

Iteration: 1
 Score = 44.3 bits (103), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 18/35 (51%), Positives = 22/35 (62%)
Query: 85  VEAEEQLPPGWERHEDNDGPYYWHIKSGTIQRDPP 119
            E +  LP GW R +D  G YYWHI +GT Q +PP
Sbjct: 14  FETDSDLPAGWMRVQDTSGTYYWHIPTGTTQWEPP 48

>pdb|2HO2|A Chain A, Structure Of Human Fe65-Ww Domain In Complex With Hmena Peptide. Length = 38

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 91  LPPGWERHEDNDGPYYWHIKSGTIQRDPP 119
           LP GW R +D  G YYWHI +GT Q +PP
Sbjct: 4   LPAGWMRVQDTSGTYYWHIPTGTTQWEPP 32

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	282
3d8d_A	148	Amyloid beta A4 precursor protein-binding family 1	3e-14
2ysc_A	39	Amyloid beta A4 precursor protein-binding family B	6e-12
2e45_A	55	Fe65 protein, amyloid beta A4 precursor protein-bi	1e-10
2ho2_A	38	Fe65 protein, amyloid beta A4 protein-binding fami	2e-10
2ho2_A	38	Fe65 protein, amyloid beta A4 protein-binding fami	5e-04
2l5f_A	92	PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA	9e-06
2jxw_A	75	WW domain-binding protein 4; WW domain containing	3e-05
1o6w_A	75	PRP40, PRE-mRNA processing protein PRP40; WW domai	1e-04
2kxq_A	90	E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG	2e-04
1wr3_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	4e-04
1ymz_A	43	CC45; artificial protein, computational design, un	6e-04
2ysh_A	40	GAS-7, growth-arrest-specific protein 7; WW domain	9e-04

>3d8d_A Amyloid beta A4 precursor protein-binding family 1; alpha-beta structure, phosphotyrosine binding domain; 2.20A {Homo sapiens} PDB: 3d8e_A 3d8f_A Length = 148

 Score = 67.8 bits (165), Expect = 3e-14
 Identities = 24/37 (64%), Positives = 28/37 (75%)

Query: 232 FAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLGRN 268
           FAVRSLGWVE++E +L P RSS AVN CI  LS  +N
Sbjct: 5   FAVRSLGWVEMTEEELAPGRSSVAVNNCIRQLSYHKN 41

>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1 Length = 39

 Score = 58.1 bits (140), Expect = 6e-12
 Identities = 16/38 (42%), Positives = 21/38 (55%)

Query: 84  SVEAEEQLPPGWERHEDNDGPYYWHIKSGTIQRDPPEF 121
           S  +   LPPGW +  D  G YYWH+ SG+ Q   P +
Sbjct: 2   SSGSSGGLPPGWRKIHDAAGTYYWHVPSGSTQWQRPTW 39

>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1 Length = 55

 Score = 55.1 bits (132), Expect = 1e-10
 Identities = 18/38 (47%), Positives = 24/38 (63%)

Query: 83  SSVEAEEQLPPGWERHEDNDGPYYWHIKSGTIQRDPPE 120
           ++ E +  LP GW R +D  G YYWHI +GT Q +PP 
Sbjct: 12  NAFETDSDLPAGWMRVQDTSGTYYWHIPTGTTQWEPPG 49

>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A Length = 38

 Score = 54.3 bits (130), Expect = 2e-10
 Identities = 17/30 (56%), Positives = 20/30 (66%)

Query: 91  LPPGWERHEDNDGPYYWHIKSGTIQRDPPE 120
           LP GW R +D  G YYWHI +GT Q +PP 
Sbjct: 4   LPAGWMRVQDTSGTYYWHIPTGTTQWEPPG 33

>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A Length = 38

 Score = 36.2 bits (83), Expect = 5e-04
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 137 ETVNNDGPYYWHIKSGTIQRDPPE 160
              +  G YYWHI +GT Q +PP 
Sbjct: 10  RVQDTSGTYYWHIPTGTTQWEPPG 33

>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens} Length = 92

 Score = 42.3 bits (99), Expect = 9e-06
 Identities = 13/76 (17%), Positives = 28/76 (36%), Gaps = 2/76 (2%)

Query: 87  AEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETVNNDG-P 144
                   W  H+  DG  YY++ ++     + P+      E         E  ++ G  
Sbjct: 8   TASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDLKTPAEQLLSKCPWKEYKSDSGKT 67

Query: 145 YYWHIKSGTIQRDPPE 160
           YY++ ++   +   P+
Sbjct: 68  YYYNSQTKESRWAKPK 83

>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens} Length = 75

 Score = 40.4 bits (94), Expect = 3e-05
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 2/72 (2%)

Query: 91  LPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDAETVNNDG-PYYWH 148
               W     ++G  YY+ + SG  Q + PE   G  +         E ++ DG  YY++
Sbjct: 3   SKGRWVEGITSEGYHYYYDLISGASQWEKPEGFQGDLKKTAVKTVWVEGLSEDGFTYYYN 62

Query: 149 IKSGTIQRDPPE 160
            ++G  + + P+
Sbjct: 63  TETGESRWEKPD 74

>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1 Length = 75

 Score = 38.7 bits (90), Expect = 1e-04
 Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 2/69 (2%)

Query: 94  GWERHEDNDG-PYYWHIKSGTIQ-RDPPEFTYGKNEPKTPLVKDAETVNNDGPYYWHIKS 151
            W+  +D  G  YY++  +       P E    +          A    +   YY++  +
Sbjct: 3   IWKEAKDASGRIYYYNTLTKKSTWEKPKELISQEELLLRENGWKAAKTADGKVYYYNPTT 62

Query: 152 GTIQRDPPE 160
                  P 
Sbjct: 63  RETSWTIPA 71

>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A* Length = 90

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 7/80 (8%)

Query: 87  AEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFTYGKNEPKTPLVKDA-----ETVN 140
           +   LP G+E+     G  Y+ H ++G      P      +      +            
Sbjct: 6   SPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVPRDLSNINCEELGPLPPGWEIRNT 65

Query: 141 NDG-PYYWHIKSGTIQRDPP 159
             G  Y+    + T Q   P
Sbjct: 66  ATGRVYFVDHNNRTTQFTDP 85

>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} Length = 36

 Score = 36.3 bits (85), Expect = 4e-04
 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 87  AEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPP 119
               LPPGWE   DN G  YY +  + + Q   P
Sbjct: 1   GSPPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRP 34

>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1 Length = 43

 Score = 35.7 bits (83), Expect = 6e-04
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 84  SVEAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT 122
           S      LPPGWER  D +G  YY+++++ T   + P   
Sbjct: 2   SHGRSMPLPPGWERRTDVEGKVYYFNVRTLTTTWERPTII 41

>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1 Length = 40

 Score = 35.4 bits (82), Expect = 9e-04
 Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)

Query: 87  AEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPP 119
               LPPGW+ +    G  YY +  +     + P
Sbjct: 4   GSSGLPPGWQSYLSPQGRRYYVNTTTNETTWERP 37

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	282
3d8d_A	148	Amyloid beta A4 precursor protein-binding family 1	99.8
2e45_A	55	Fe65 protein, amyloid beta A4 precursor protein-bi	99.69
2ysc_A	39	Amyloid beta A4 precursor protein-binding family B	99.23
2ho2_A	38	Fe65 protein, amyloid beta A4 protein-binding fami	99.21
1wr3_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	99.08
2jv4_A	54	Peptidyl-prolyl CIS/trans isomerase; ppiase domain	99.04
2ysh_A	40	GAS-7, growth-arrest-specific protein 7; WW domain	99.03
1wr4_A	36	Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {M	99.02
2dmv_A	43	Itchy homolog E3 ubiquitin protein ligase; WW doma	99.01
1e0m_A	37	Wwprototype; SH3 prototype, protein design, de nov	99.0
2kyk_A	39	E3 ubiquitin-protein ligase itchy homolog; LMP2A,	98.98
2zaj_A	49	Membrane-associated guanylate kinase, WW and PDZ d	98.97
1ymz_A	43	CC45; artificial protein, computational design, un	98.95
2dwv_A	49	Salvador homolog 1 protein; WW domain, dimer, stru	98.93
2law_A	38	Yorkie homolog; YAP, SMAD1, CDK, signal transducti	98.91
1wr7_A	41	NEDD4-2; all-beta, ligase; NMR {Mus musculus}	98.91
2ysg_A	40	Syntaxin-binding protein 4; synip, STXBP4, WW doma	98.9
2ysf_A	40	E3 ubiquitin-protein ligase itchy homolog; AIP4, N	98.88
2l4j_A	46	YES-associated protein 2 (YAP2); WW domain, medaka	98.87
1i5h_W	50	Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains,	98.84
2djy_A	42	SMAD ubiquitination regulatory factor 2; beta shee	98.83
2kpz_A	49	E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV	98.82
2ez5_W	46	Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW doma	98.82
2ysb_A	49	Salvador homolog 1 protein; WW domain, structural	98.81
2yse_A	60	Membrane-associated guanylate kinase, WW and PDZ d	98.76
2jmf_A	53	E3 ubiquitin-protein ligase suppressor of deltex;	98.76
2jx8_A	52	Hpcif1, phosphorylated CTD-interacting factor 1; p	98.73
1jmq_A	46	YAP65, 65 kDa YES-associated protein; polyproline	98.68
1wmv_A	54	WWOX, WW domain containing oxidoreductase; all-bet	98.68
2ysd_A	57	Membrane-associated guanylate kinase, WW and PDZ d	98.67
3tc5_A	166	Peptidyl-prolyl CIS-trans isomerase NIMA-interact;	98.54
2kxq_A	90	E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG	98.44
2ysi_A	40	Transcription elongation regulator 1; Ca150, FBP28	98.44
1e0n_A	27	Hypothetical protein; YJQ8WW domain, WW domain, sa	98.44
1tk7_A	88	CG4244-PB; WW domain, notch, signaling protein; NM	98.42
1ywi_A	41	Formin-binding protein 3; WW domain, class II, pro	98.34
2kxq_A	90	E3 ubiquitin-protein ligase smurf2; WW, smurf2, TG	98.32
1tk7_A	88	CG4244-PB; WW domain, notch, signaling protein; NM	98.27
2l5f_A	92	PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA	98.19
1e0l_A	37	Formin binding protein; SH3 domain, WW domain, FBP	98.14
3l4h_A	109	E3 ubiquitin-protein ligase HECW1; E3 ligase, WW d	98.11
1o6w_A	75	PRP40, PRE-mRNA processing protein PRP40; WW domai	98.11
2jxw_A	75	WW domain-binding protein 4; WW domain containing	97.86
1eg3_A	261	Dystrophin; EF-hand like domain, WW domain, struct	97.84
2l5f_A	92	PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA	97.75
1yw5_A	177	Peptidyl prolyl CIS/trans isomerase; WW-domain, pp	97.68
3olm_A	429	E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {S	97.66
1o6w_A	75	PRP40, PRE-mRNA processing protein PRP40; WW domai	97.61
2jxw_A	75	WW domain-binding protein 4; WW domain containing	97.49
2dk1_A	50	WW domain-binding protein 4; WBP-4, formin- bindin	97.43
1aqc_A	172	X11; PTB domain; 2.30A {Homo sapiens} SCOP: b.55.1	95.86
2dk7_A	73	Transcription elongation regulator 1; structural g	95.7
2ej8_A	160	DCC-interacting protein 13 alpha; structural genom	95.57
2ela_A	175	Adapter protein containing PH domain, PTB domain a	95.16
3le4_A	79	Microprocessor complex subunit DGCR8; WW motif, di	92.81
3so6_A	137	LDL receptor adaptor protein; PTB, endocytic adapt	92.24
1n3h_A	207	SHC transforming protein; free protein, beta sandw	91.73
2dyq_A	144	Amyloid beta A4 precursor protein-binding family 3	80.19

>3d8d_A Amyloid beta A4 precursor protein-binding family 1; alpha-beta structure, phosphotyrosine binding domain; 2.20A {Homo sapiens} PDB: 3d8e_A 3d8f_A

Probab=99.80  E-value=2.5e-20  Score=158.56  Aligned_cols=46  Identities=52%  Similarity=0.811  Sum_probs=44.0

Q ss_pred             ceEeEEeeeceeeeccccCCCcchhHHHHHHHHHhhcccCCCcccc
Q psy3534         229 LIRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLGRNHHSTIY  274 (282)
Q Consensus       229 ~~~FAVRSLGWVEmaEEDLaPGKSSvAVNnCIrQLSy~RnDirD~V  274 (282)
                      .+||||||||||||+|+||+|||||.|||+||||||++|+|++|..
T Consensus         2 ~~~F~Vr~LG~vEv~e~~~~p~r~s~~v~~~ir~L~~~~~~~~d~~   47 (148)
T 3d8d_A            2 IKCFAVRSLGWVEMTEEELAPGRSSVAVNNCIRQLSYHKNNLHDPM   47 (148)
T ss_dssp             CEEEEEEEEEEEECCGGGGSTTTHHHHHHHHHHHHTTCCCCCCCTT
T ss_pred             ceeEEeeecccEEEecccCCccccHHHHHHHHHHHHhccccccccc
Confidence            4799999999999999999999999999999999999999999954

>2e45_A Fe65 protein, amyloid beta A4 precursor protein-binding family B member 1; triple-stranded beta-sheet; NMR {Homo sapiens} SCOP: b.72.1.1

Probab=99.69  E-value=8.4e-18  Score=123.04  Aligned_cols=47  Identities=43%  Similarity=0.864  Sum_probs=43.2

Q ss_pred             CCCccccCCCCCCCCCCCCCccccccCCcCEEEEeeCCCcccCCCCCC
Q psy3534          75 SPSLSSTLSSVEAEEQLPPGWERHEDNDGPYYWHIKSGTIQRDPPEFT  122 (282)
Q Consensus        75 ~d~iw~~~~~~~~~~~LPPGWer~sds~G~YYwhv~Tg~tQWe~P~~~  122 (282)
                      +++||++|. ++.+.+|||||+++.|.+|+|||||.||+|||++|+..
T Consensus         5 ~~~~w~~~~-~~~~~~LPpGW~~~~D~sGtYY~h~~T~tTQWerP~~~   51 (55)
T 2e45_A            5 SDSFWNPNA-FETDSDLPAGWMRVQDTSGTYYWHIPTGTTQWEPPGRA   51 (55)
T ss_dssp             -CCTTCSST-TCSCSCCCTTEEEEEETTEEEEEETTTCCEESSCCCCC
T ss_pred             ccccccccc-ccCCCCCCCCCeEeecCCCCEEEEcCCCCCccCCCCCC
Confidence            469999955 99999999999999999999999999999999999764

>2ysc_A Amyloid beta A4 precursor protein-binding family B member 3; Fe65-like protein 2, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1

Probab=99.23  E-value=3.6e-12  Score=86.63  Aligned_cols=36  Identities=42%  Similarity=1.027  Sum_probs=32.1

Q ss_pred             CCCCCCCCCccccccCCcCEEEEeeCCCcccCCCCC
Q psy3534          86 EAEEQLPPGWERHEDNDGPYYWHIKSGTIQRDPPEF  121 (282)
Q Consensus        86 ~~~~~LPPGWer~sds~G~YYwhv~Tg~tQWe~P~~  121 (282)
                      ..+..||+|||+..+.+|.||||+.|++|||++|++
T Consensus         4 ~~~~~LP~GWe~~~~~~G~YY~n~~t~~tqWe~P~~   39 (39)
T 2ysc_A            4 GSSGGLPPGWRKIHDAAGTYYWHVPSGSTQWQRPTW   39 (39)
T ss_dssp             CCCCCCCTTEEEEEETTEEEEEESSSCCEESSCCCC
T ss_pred             CCCCCCCCCcEEEEcCCCCEEEEcCCCCEeccCCCC
Confidence            456789999998888779999999999999999974

>2ho2_A Fe65 protein, amyloid beta A4 protein-binding family B member 1; WW domain, beta sheet, Fe65, protein binding; 1.33A {Homo sapiens} SCOP: b.72.1.1 PDB: 2idh_A* 2oei_A

Probab=99.21  E-value=3.9e-12  Score=86.15  Aligned_cols=34  Identities=50%  Similarity=1.111  Sum_probs=30.0

Q ss_pred             CCCCCCccccccCCcCEEEEeeCCCcccCCCCCC
Q psy3534          89 EQLPPGWERHEDNDGPYYWHIKSGTIQRDPPEFT  122 (282)
Q Consensus        89 ~~LPPGWer~sds~G~YYwhv~Tg~tQWe~P~~~  122 (282)
                      ..||+|||+..+..|+||||+.|++|||++|+.+
T Consensus         2 ~~LP~GWe~~~d~~g~YY~n~~t~~tqWe~P~~~   35 (38)
T 2ho2_A            2 SDLPAGWMRVQDTSGTYYWHIPTGTTQWEPPGRA   35 (38)
T ss_dssp             CCSCTTEEEEECSSCEEEEETTTTEEESSCCCC-
T ss_pred             CcCCCCceEEEeCCCCEEEecCCCCEeccCCCCC
Confidence            4699999977777889999999999999999864

>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}

Probab=99.08  E-value=4.2e-11  Score=78.50  Aligned_cols=33  Identities=39%  Similarity=0.762  Sum_probs=30.2

Q ss_pred             CCCCCCCccccccCCc-CEEEEeeCCCcccCCCC
Q psy3534          88 EEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPE  120 (282)
Q Consensus        88 ~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~  120 (282)
                      ...||+||++..+..| +||+|+.|++|||++|.
T Consensus         2 ~~~LP~GWe~~~d~~G~~Yy~n~~t~~t~We~P~   35 (36)
T 1wr3_A            2 SPPLPPGWEEKVDNLGRTYYVNHNNRSTQWHRPS   35 (36)
T ss_dssp             CSCSCTTEEEEECSSSCEEEEETTTCCEESSCSC
T ss_pred             CCCCCCCCEEEECCCCCEEEEECCCCCEeeeCcC
Confidence            4579999998888899 99999999999999996

>2jv4_A Peptidyl-prolyl CIS/trans isomerase; ppiase domain, WW domain group IV, rotamase; NMR {Emericella nidulans}

Probab=99.04  E-value=7.2e-11  Score=85.00  Aligned_cols=35  Identities=31%  Similarity=0.746  Sum_probs=30.2

Q ss_pred             CCCCCCCcccc-ccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534          88 EEQLPPGWERH-EDNDG-PYYWHIKSGTIQRDPPEFT  122 (282)
Q Consensus        88 ~~~LPPGWer~-sds~G-~YYwhv~Tg~tQWe~P~~~  122 (282)
                      +..||+||+.. +++.| +||+|+.||+|||++|+..
T Consensus         5 ~~~LP~GW~~~~~~~~Gr~YY~N~~T~~sqWe~P~~~   41 (54)
T 2jv4_A            5 NTGLPAGWEVRHSNSKNLPYYFNPATRESRWEPPADT   41 (54)
T ss_dssp             CCCCCSSCCEEECSSSSCEEEEETTTTEEESSCCTTS
T ss_pred             CCCCCCCcEEEEECCCCCEEEEECCCCcEEecCCCCc
Confidence            56799999954 55689 9999999999999999864

>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=99.03  E-value=9.6e-11  Score=78.36  Aligned_cols=36  Identities=25%  Similarity=0.583  Sum_probs=32.3

Q ss_pred             CCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534          86 EAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEF  121 (282)
Q Consensus        86 ~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~  121 (282)
                      ..+..||+||++..+..| +||+|+.|++|||++|..
T Consensus         3 ~~~~~LP~gW~~~~d~~Gr~YY~n~~T~~t~We~P~~   39 (40)
T 2ysh_A            3 SGSSGLPPGWQSYLSPQGRRYYVNTTTNETTWERPSS   39 (40)
T ss_dssp             CCCSSCCTTCEEEECTTSCEEEECSSSCCEESSSCCC
T ss_pred             CCCCCCCCCceEEECCCCCEEEEECCCCCEeCCCCCC
Confidence            456789999998888899 999999999999999964

>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*

Probab=99.02  E-value=9.4e-11  Score=76.24  Aligned_cols=33  Identities=33%  Similarity=0.666  Sum_probs=30.3

Q ss_pred             CCCCCCCccccccCCc-CEEEEeeCCCcccCCCC
Q psy3534          88 EEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPE  120 (282)
Q Consensus        88 ~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~  120 (282)
                      +..||+||+...+.+| +||+|+.|++|||++|.
T Consensus         2 ~~~LP~gWe~~~d~~g~~Yy~n~~t~~t~W~~P~   35 (36)
T 1wr4_A            2 SPGLPSGWEERKDAKGRTYYVNHNNRTTTWTRPI   35 (36)
T ss_dssp             CTTCCTTEEEEECSSSCEEEEETTTTEEESSCCC
T ss_pred             CCCCCCCCEEEECCCCCEEEEECCCCCEeCcCCC
Confidence            4679999998888899 99999999999999996

>2dmv_A Itchy homolog E3 ubiquitin protein ligase; WW domain, three stranded antiparallel beta sheet, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.01  E-value=1.2e-10  Score=79.45  Aligned_cols=36  Identities=33%  Similarity=0.621  Sum_probs=32.5

Q ss_pred             CCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534          87 AEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT  122 (282)
Q Consensus        87 ~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~  122 (282)
                      .+..||+||++..+..| +||+|+.|++|||++|..+
T Consensus         4 ~~~~LP~GWe~~~d~~Gr~YY~n~~t~~T~We~P~~~   40 (43)
T 2dmv_A            4 GSSGLPPGWEQRVDQHGRVYYVDHVEKRTTWDRPSGP   40 (43)
T ss_dssp             SCCSCCTTEEEEECTTSCEEEEETTTCCEESSCSSSC
T ss_pred             CCCCCCCCceEEECCCCCEEEEECCCCCEecCCcCCC
Confidence            45789999998888899 9999999999999999865

>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1

Probab=99.00  E-value=1.4e-10  Score=76.01  Aligned_cols=33  Identities=30%  Similarity=0.779  Sum_probs=30.0

Q ss_pred             CCCCCCccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534          89 EQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEF  121 (282)
Q Consensus        89 ~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~  121 (282)
                      ..||+||+...+..| +||+|+.|++|||++|..
T Consensus         2 ~~LP~gW~~~~~~~G~~Yy~n~~t~~t~W~~P~~   35 (37)
T 1e0m_A            2 MGLPPGWDEYKTHNGKTYYYNHNTKTSTWTDPRM   35 (37)
T ss_dssp             CCSCTTEEEEECSSCCEEEEETTTTEEESSCTTT
T ss_pred             CCCCCCcEEEECCCCCEEEEECCCCCeeeeCcCC
Confidence            479999997777889 999999999999999975

>2kyk_A E3 ubiquitin-protein ligase itchy homolog; LMP2A, PY motif, WW domain; NMR {Homo sapiens}

Probab=98.98  E-value=2e-10  Score=76.65  Aligned_cols=34  Identities=41%  Similarity=0.703  Sum_probs=30.6

Q ss_pred             CCCCCCCccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534          88 EEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEF  121 (282)
Q Consensus        88 ~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~  121 (282)
                      ...||+||+...+.+| +||+|+.|++|||++|..
T Consensus         4 ~~~LP~gWe~~~d~~G~~YY~n~~t~~t~We~P~~   38 (39)
T 2kyk_A            4 MGPLPPGWERRVDNMGRIYYVDHFTRTTTWQRPTL   38 (39)
T ss_dssp             SCCCCSSCEEEECTTSCEEEECSSSCCEECCCCCC
T ss_pred             cCCCCCCcEEEEcCCCCEEEEECCCCCEeccCCCC
Confidence            3579999998788899 999999999999999974

>2zaj_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; BAI1-associated protein 1 (BAP-1); NMR {Homo sapiens}

Probab=98.97  E-value=2.3e-10  Score=80.99  Aligned_cols=38  Identities=32%  Similarity=0.498  Sum_probs=33.7

Q ss_pred             CCCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534          85 VEAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT  122 (282)
Q Consensus        85 ~~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~  122 (282)
                      .+....||+|||+..+..| +||+|+.|++|||++|..+
T Consensus         8 ~~~~~~LP~GWe~~~d~~Gr~YYvnh~t~~T~We~P~~~   46 (49)
T 2zaj_A            8 LDSELELPAGWEKIEDPVYGIYYVDHINRKTQYENPSGP   46 (49)
T ss_dssp             CCCSSCCCTTEEEEEETTTEEEEEETTTTEEESSCCCSS
T ss_pred             cCCCCCCCcCceEEEcCCCCEEEEeCCCCCEecCCCCCC
Confidence            4566789999997777889 9999999999999999875

>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1

Probab=98.95  E-value=2.1e-10  Score=77.90  Aligned_cols=36  Identities=36%  Similarity=0.827  Sum_probs=30.7

Q ss_pred             CCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534          86 EAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEF  121 (282)
Q Consensus        86 ~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~  121 (282)
                      +....||+||++..+.+| +||+|+.|++|||++|..
T Consensus         4 e~~~~LP~gW~~~~~~~Gr~YY~n~~T~~t~We~P~~   40 (43)
T 1ymz_A            4 GRSMPLPPGWERRTDVEGKVYYFNVRTLTTTWERPTI   40 (43)
T ss_dssp             ---CCCCSSEEEEECTTSCEEEEETTTTEEESSCCCS
T ss_pred             ccCCCCCCCCEEEECCCCCEEEEECCCCCCcccCCcc
Confidence            345689999998888899 999999999999999975

>2dwv_A Salvador homolog 1 protein; WW domain, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.93  E-value=4.6e-10  Score=79.30  Aligned_cols=36  Identities=36%  Similarity=0.577  Sum_probs=32.2

Q ss_pred             CCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCCC
Q psy3534          88 EEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFTY  123 (282)
Q Consensus        88 ~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~~  123 (282)
                      ...||+|||+..+..| +||+|+.|++|||++|..++
T Consensus        11 ~~~LP~GWe~~~d~~g~~YYvnh~t~~T~We~P~~~s   47 (49)
T 2dwv_A           11 REGLPPGWERVESSEFGTYYVDHTNKRAQYRHPSGPS   47 (49)
T ss_dssp             SSCCCTTEEEEEETTTEEEEEETTTTEEESSCCCCCS
T ss_pred             CCCCCcCcEEEECCCCCEEEEECCCCCEeccCcCCCC
Confidence            4679999998788888 99999999999999998753

>2law_A Yorkie homolog; YAP, SMAD1, CDK, signal transduction, signaling protein-TRAN complex; NMR {Homo sapiens}

Probab=98.91  E-value=3.5e-10  Score=75.52  Aligned_cols=34  Identities=38%  Similarity=0.637  Sum_probs=29.6

Q ss_pred             CCCCCCCCccccccCCc-CEEEEeeCCCcccCCCC
Q psy3534          87 AEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPE  120 (282)
Q Consensus        87 ~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~  120 (282)
                      ....||+|||+..+.+| +||.|+.|++|||++|.
T Consensus         3 ~~~~LP~gWe~~~~~~G~~Yy~nh~t~~ttW~~Pr   37 (38)
T 2law_A            3 MEGPLPDGWEQAMTQDGEIYYINHKNKTTSWLDPR   37 (38)
T ss_dssp             --CCCSSSCCEEEETTTEEEEEETTTTEEESSCTT
T ss_pred             ccCCCCCCcEEEECCCCCEEEEECCCCCEeCCCCC
Confidence            34679999997777899 99999999999999995

>1wr7_A NEDD4-2; all-beta, ligase; NMR {Mus musculus}

Probab=98.91  E-value=3.4e-10  Score=76.53  Aligned_cols=35  Identities=29%  Similarity=0.675  Sum_probs=31.3

Q ss_pred             CCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCC
Q psy3534          86 EAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPE  120 (282)
Q Consensus        86 ~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~  120 (282)
                      ..+..||+||+...+.+| +||+|+.|++|||++|.
T Consensus         4 ~~~~~LP~gWe~~~~~~G~~Yy~n~~t~~t~We~Pr   39 (41)
T 1wr7_A            4 GIQSFLPPGWEMRIAPNGRPFFIDHNTKTTTWEDPR   39 (41)
T ss_dssp             CCCCSSCTTEEEEECTTSCEEEEETTTTEEESSCGG
T ss_pred             CccCCCCCCcEEEEcCCCCEEEEECCCCCeecCCCC
Confidence            456789999997777889 99999999999999995

>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=98.90  E-value=6.2e-10  Score=75.02  Aligned_cols=35  Identities=29%  Similarity=0.495  Sum_probs=31.1

Q ss_pred             CCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534          87 AEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEF  121 (282)
Q Consensus        87 ~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~  121 (282)
                      ....||+|||+..+..| +||.|+.|++|||++|..
T Consensus         4 ~~~~LP~gWe~~~~~~Gr~Yy~nh~t~~ttW~~P~~   39 (40)
T 2ysg_A            4 GSSGLPYGWEEAYTADGIKYFINHVTQTTSWIHPVM   39 (40)
T ss_dssp             SSSCCCTTEEEEECSSSCEEEEESSSCCEECCCCCC
T ss_pred             CcCCCCCCcEEEEcCCCCEEEEECCCCcCcCCCCCC
Confidence            45679999997777899 999999999999999963

>2ysf_A E3 ubiquitin-protein ligase itchy homolog; AIP4, NAPP1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=98.88  E-value=7.3e-10  Score=74.81  Aligned_cols=35  Identities=31%  Similarity=0.563  Sum_probs=31.2

Q ss_pred             CCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCC
Q psy3534          86 EAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPE  120 (282)
Q Consensus        86 ~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~  120 (282)
                      ..+..||+|||+..+.+| +||.|+.|++|||++|.
T Consensus         3 ~~~~~LP~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr   38 (40)
T 2ysf_A            3 SGSSGLPEGWEMRFTVDGIPYFVDHNRRTTTYIDPR   38 (40)
T ss_dssp             CCCCCCCSSEEEEECTTCCEEEEETTTCCEESSCTT
T ss_pred             CCcCCCCcCcEEEEcCCCCEEEEECCCCcEecCCCC
Confidence            356789999997777899 99999999999999996

>2l4j_A YES-associated protein 2 (YAP2); WW domain, medaka, transcription; NMR {Oryzias latipes}

Probab=98.87  E-value=8.9e-10  Score=76.71  Aligned_cols=37  Identities=32%  Similarity=0.550  Sum_probs=32.7

Q ss_pred             CCCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534          85 VEAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEF  121 (282)
Q Consensus        85 ~~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~  121 (282)
                      ......||+|||+..+.+| +||.|+.|++|||++|..
T Consensus         6 ~~~~~~LP~gWe~~~~~~G~~Yyinh~t~~TtWe~Pr~   43 (46)
T 2l4j_A            6 SPASGPLPEGWEQAITPEGEIYYINHKNKTTSWLDPRL   43 (46)
T ss_dssp             STTTSCCCTTCEEEECTTSCEEEEETTTTEEECSCCSS
T ss_pred             CCcCCCCCcCceeEECCCCCEEEEECCCCCEeCCCCCc
Confidence            4566789999997777899 999999999999999974

>1i5h_W Rnedd4, ubiquitin ligase NEDD4; NEDD4, WW domains, ENAC, PY motif, liddle syndrome, proline-rich, ligase; NMR {Rattus norvegicus} SCOP: b.72.1.1 PDB: 1yiu_A 2jo9_A 2joc_A*

Probab=98.84  E-value=1.2e-09  Score=77.27  Aligned_cols=37  Identities=27%  Similarity=0.624  Sum_probs=32.2

Q ss_pred             CCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534          86 EAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT  122 (282)
Q Consensus        86 ~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~  122 (282)
                      .....||+|||+..+..| +||+|+.|++|||++|...
T Consensus         7 ~~~~~LP~gWe~~~~~~Gr~Yy~nh~t~~T~We~Pr~~   44 (50)
T 1i5h_W            7 NDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQ   44 (50)
T ss_dssp             SCCSSCSTTEEEEECTTSCEEEEETTTTEEESSCTTTS
T ss_pred             ccCCCCCcCcEEEEcCCCCEEEEECCCCCEEeeCCCCC
Confidence            345679999997777889 9999999999999999864

>2djy_A SMAD ubiquitination regulatory factor 2; beta sheet, polyproline type II helix, PPII, ligase/signaling protein complex; NMR {Homo sapiens} PDB: 2lb1_A

Probab=98.83  E-value=1.4e-09  Score=74.35  Aligned_cols=36  Identities=31%  Similarity=0.633  Sum_probs=31.4

Q ss_pred             CCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534          87 AEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT  122 (282)
Q Consensus        87 ~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~  122 (282)
                      ....||+|||+..+.+| +||.|+.|++|||++|...
T Consensus         4 ~~~~LP~GWe~~~~~~G~~Yy~nh~t~~ttW~~Pr~~   40 (42)
T 2djy_A            4 GSGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLS   40 (42)
T ss_dssp             CCSCCCSSEEEEECSSSCEEEEETTTTEEESSCTTTS
T ss_pred             CcCCCCcCcEEEECCCCCEEEEECCCCCEeCCCCCCC
Confidence            34579999997677899 9999999999999999754

>2kpz_A E3 ubiquitin-protein ligase NEDD4; WW domain, HTLV1, NEDD4, human modular domain, complex, HOST interaction, ligase; NMR {Homo sapiens} PDB: 2kq0_A 2laj_A*

Probab=98.82  E-value=1.2e-09  Score=76.68  Aligned_cols=37  Identities=24%  Similarity=0.590  Sum_probs=30.2

Q ss_pred             CCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534          86 EAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT  122 (282)
Q Consensus        86 ~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~  122 (282)
                      .....||+|||...+.+| +||+|+.|++|||++|...
T Consensus         8 ~~~~~LP~gWe~~~~~~G~~Yy~nh~T~~ttWe~Pr~~   45 (49)
T 2kpz_A            8 IEQGFLPKGWEVRHAPNGRPFFIDHNTKTTTWEDPRLK   45 (49)
T ss_dssp             ----CCCTTEEEEECTTSCEEEEETTTTEEESSCTTCC
T ss_pred             ccCCCCCCCcEEEECCCCCEEEEECCCCCEecCCCCCC
Confidence            456789999997777889 9999999999999999764

>2ez5_W Dnedd4, E3 ubiquitin-protein ligase NEDD4; WW domain, PY motif, binding affinity, signalling protein,ligase; NMR {Drosophila melanogaster}

Probab=98.82  E-value=1.5e-09  Score=75.51  Aligned_cols=37  Identities=24%  Similarity=0.437  Sum_probs=32.3

Q ss_pred             CCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534          86 EAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT  122 (282)
Q Consensus        86 ~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~  122 (282)
                      ..+..||+|||+..+.+| +||.|+.|++|||++|...
T Consensus         6 ~~~~~LP~gWe~~~~~~Gr~Yyinh~t~~TtW~~Pr~~   43 (46)
T 2ez5_W            6 GEEEPLPPRWSMQVAPNGRTFFIDHASRRTTWIDPRNG   43 (46)
T ss_dssp             CCSCCCCTTEEEEECTTSSEEEEETTTTEEESBCTTTC
T ss_pred             CCCCCCCcCcEEEEcCCCCEEEEECCCCCEeccCCCCC
Confidence            455679999997777889 9999999999999999753

>2ysb_A Salvador homolog 1 protein; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: k.22.1.1

Probab=98.81  E-value=2e-09  Score=76.01  Aligned_cols=36  Identities=28%  Similarity=0.515  Sum_probs=31.7

Q ss_pred             CCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534          87 AEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT  122 (282)
Q Consensus        87 ~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~  122 (282)
                      .+..||+|||+..+..| +||+|+.|++|||++|...
T Consensus         8 ~~~~LP~gWe~~~~~~Gr~Yy~nh~t~~T~W~~P~~~   44 (49)
T 2ysb_A            8 EDLPLPPGWSVDWTMRGRKYYIDHNTNTTHWSHPLES   44 (49)
T ss_dssp             CCCCCCTTEEEEECSSSCEEEEETTTTEEESSCTTTS
T ss_pred             CCCCCCCCceEEECCCCCEEEEEcCCCCEEecCCCCC
Confidence            45679999997777889 9999999999999999864

>2yse_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI-1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.76  E-value=2e-09  Score=79.38  Aligned_cols=37  Identities=32%  Similarity=0.539  Sum_probs=32.6

Q ss_pred             CCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534          86 EAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT  122 (282)
Q Consensus        86 ~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~  122 (282)
                      +....||+|||+..+..| +||+|+.|++|||++|...
T Consensus         9 d~~~~LP~GWE~~~d~~Gr~YYvnh~tk~T~We~P~~~   46 (60)
T 2yse_A            9 DSELELPAGWEKIEDPVYGIYYVDHINRKTQYENPVLE   46 (60)
T ss_dssp             CCCSSCCSSEEEEECSSSCEEEEETTTTEEESSCHHHH
T ss_pred             CCCCCCCCCcEEEECCCCCEEEEeCCCCCeeccCCCch
Confidence            456789999997788889 9999999999999999753

>2jmf_A E3 ubiquitin-protein ligase suppressor of deltex; WW domain, solution, complex, ligase/signaling protein complex; NMR {Drosophila melanogaster} SCOP: b.72.1.1 PDB: 2op7_A

Probab=98.76  E-value=3.6e-09  Score=75.82  Aligned_cols=37  Identities=24%  Similarity=0.496  Sum_probs=32.4

Q ss_pred             CCCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534          85 VEAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEF  121 (282)
Q Consensus        85 ~~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~  121 (282)
                      ......||+|||...+.+| +||.|+.|++|||++|..
T Consensus        13 ~~~~~~LP~GWe~~~~~~Gr~Yyinh~tk~TtW~dPr~   50 (53)
T 2jmf_A           13 LINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRP   50 (53)
T ss_dssp             TTSCSCCCTTEEEEECTTSCEEEEETTTCCEESSCCCS
T ss_pred             cCcCCCCCcCcEEEEcCCCCEEEEeCCCCcEecCCCCC
Confidence            4556789999996677899 999999999999999974

>2jx8_A Hpcif1, phosphorylated CTD-interacting factor 1; protein fragment, WW domain, triple-standed beta-sheet, alpha-helix, nucleus, phosphorylation; NMR {Homo sapiens}

Probab=98.73  E-value=1.3e-09  Score=77.89  Aligned_cols=34  Identities=24%  Similarity=0.528  Sum_probs=29.8

Q ss_pred             CCCCCCcc-ccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534          89 EQLPPGWE-RHEDNDG-PYYWHIKSGTIQRDPPEFT  122 (282)
Q Consensus        89 ~~LPPGWe-r~sds~G-~YYwhv~Tg~tQWe~P~~~  122 (282)
                      ..||+||+ +.+.+.| .||||+.||++|||+|..+
T Consensus         9 ~~LP~gW~~~~~~~~gr~YY~N~~T~~SqWe~P~~~   44 (52)
T 2jx8_A            9 ELVHAGWEKCWSRRENRPYYFNRFTNQSLWEMPVLG   44 (52)
T ss_dssp             HHHHHTCCEEEETTTTEEEEEETTTTEEESSCCCCT
T ss_pred             CCCCcCcEEEEccccCCEEEEECCCCCEEeCCCCCC
Confidence            56999999 5556789 9999999999999999865

>1jmq_A YAP65, 65 kDa YES-associated protein; polyproline ligand, YAP65 mutant, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1k9q_A* 1k9r_A 1k5r_A* 2lax_A* 2lay_A*

Probab=98.68  E-value=9.5e-09  Score=70.58  Aligned_cols=38  Identities=24%  Similarity=0.497  Sum_probs=33.8

Q ss_pred             CCCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534          85 VEAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT  122 (282)
Q Consensus        85 ~~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~  122 (282)
                      ++.+..||+||+...+..| .||+++.|++|||++|...
T Consensus         3 ~P~~~~LP~GWe~~~~~~gr~y~~n~~t~~t~W~dPr~~   41 (46)
T 1jmq_A            3 IPDDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKA   41 (46)
T ss_dssp             CCSSCCCCTTBCCBCCSSCCCBEEETTTTEEESSCTTTS
T ss_pred             CCCCCCCCcCcEEEEcCCCceEEEEecCCceeecCCCch
Confidence            5677889999997777889 9999999999999999754

>1wmv_A WWOX, WW domain containing oxidoreductase; all-beta, apoptosis; NMR {Homo sapiens}

Probab=98.68  E-value=1.8e-08  Score=72.36  Aligned_cols=37  Identities=22%  Similarity=0.494  Sum_probs=32.1

Q ss_pred             CCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534          86 EAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT  122 (282)
Q Consensus        86 ~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~  122 (282)
                      .....||+|||...+.+| +||.|+.|++|||++|...
T Consensus         7 ~~~~~LP~GWe~~~~~~G~~Yyinh~tk~TtwedPr~~   44 (54)
T 1wmv_A            7 RVAGDLPYGWEQETDENGQVFFVDHINKRTTYLDPRLA   44 (54)
T ss_dssp             CCSSCSCTTEEEEECTTSCEEEEESSSCCEESSCTTSS
T ss_pred             CcCCCCCcCcEEEECCCCCEEEEeCCCCCEeecCCCCc
Confidence            345579999997777889 9999999999999999865

>2ysd_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; MAGI1, WW domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.22.1.1

Probab=98.67  E-value=1.2e-08  Score=74.10  Aligned_cols=37  Identities=22%  Similarity=0.387  Sum_probs=32.2

Q ss_pred             CCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534          86 EAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT  122 (282)
Q Consensus        86 ~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~  122 (282)
                      .....||+|||+..+..| +||.|+.|++|||++|...
T Consensus        10 ~~~~~LP~GWe~~~~~~Gr~Yyinh~tk~TtWe~Pr~~   47 (57)
T 2ysd_A           10 DNLGPLPENWEMAYTENGEVYFIDHNTKTTSWLDPRCL   47 (57)
T ss_dssp             SCCCSCCSSEEEEECSSCCEEEEETTTTEEESSCTTTC
T ss_pred             CCCCCCCcCcEEEECCCCCEEEEECCCCcEecCCCCCc
Confidence            445679999996677889 9999999999999999864

>3tc5_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact; PIN1 mutant (R14A), oncogenic transformation, small molecule cycle, rotamase, phosphoprotein; HET: 3T5 P6G; 1.40A {Homo sapiens} PDB: 2itk_A* 2q5a_A* 2xp3_A* 2xp4_A* 2xp5_A* 2xp7_A* 2xp8_A* 2xp9_A* 2xpa_A* 2xpb_A* 3kab_A* 3kag_A* 3kah_A* 3kai_A* 3kce_A* 3ntp_A* 3odk_A* 3oob_A* 2zr6_A* 1f8a_B* ...

Probab=98.54  E-value=2.1e-08  Score=84.97  Aligned_cols=36  Identities=36%  Similarity=0.717  Sum_probs=26.6

Q ss_pred             CCCCCCCcc-ccccCCc-CEEEEeeCCCcccCCCCCCC
Q psy3534          88 EEQLPPGWE-RHEDNDG-PYYWHIKSGTIQRDPPEFTY  123 (282)
Q Consensus        88 ~~~LPPGWe-r~sds~G-~YYwhv~Tg~tQWe~P~~~~  123 (282)
                      ...|||||+ +++++.| +||+|+.|++|||++|+.+.
T Consensus         7 ~~~LP~gWe~~~~~~~g~~yy~n~~t~~t~We~P~~~~   44 (166)
T 3tc5_A            7 EEKLPPGWEKAMSRSSGRVYYFNHITNASQWERPSGNS   44 (166)
T ss_dssp             ---CCTTEEEEECTTTCCEEEEETTTCCEESSCC----
T ss_pred             CCCCCCCceEEEcCCCCCEEEEECCCCCEEecCCCCCc
Confidence            457999999 5555799 99999999999999998764

>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*

Probab=98.44  E-value=6.5e-08  Score=74.58  Aligned_cols=36  Identities=25%  Similarity=0.616  Sum_probs=31.9

Q ss_pred             CCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534          87 AEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT  122 (282)
Q Consensus        87 ~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~  122 (282)
                      ....||+||++..+..| +||+|+.|++|||++|...
T Consensus         6 ~~~~LP~gWe~~~~~~Gr~YY~n~~t~~t~W~~P~~~   42 (90)
T 2kxq_A            6 SPPDLPEGYEQRTTQQGQVYFLHTQTGVSTWHDPRVP   42 (90)
T ss_dssp             SCCSCCSSCEEEEETTTEEEEEETTTTEEESSCSSSC
T ss_pred             CCCCCCCCcEEEECCCCCEEEEECCCCeEeeeccccc
Confidence            34579999998888899 9999999999999999754

>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1

Probab=98.44  E-value=1e-07  Score=64.56  Aligned_cols=34  Identities=18%  Similarity=0.453  Sum_probs=30.9

Q ss_pred             CCCCCCCCccccccCCc-CEEEEeeCCCcccCCCC
Q psy3534          87 AEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPE  120 (282)
Q Consensus        87 ~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~  120 (282)
                      ....+|++|..+.+..| .||+|+.|+++|||+|.
T Consensus         4 ~~~~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~   38 (40)
T 2ysi_A            4 GSSGTEEIWVENKTPDGKVYYYNARTRESAWTKPD   38 (40)
T ss_dssp             CCCCCCCSEEEEECTTSCEEEEETTTCCEESSCCS
T ss_pred             ccCCCCCCCEEEECCCCCEEEEECCCCCEEeCCCC
Confidence            45678999998889999 99999999999999996

>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1

Probab=98.44  E-value=4.7e-08  Score=61.79  Aligned_cols=26  Identities=38%  Similarity=0.887  Sum_probs=24.7

Q ss_pred             CCccccccCCc-CEEEEeeCCCcccCCC
Q psy3534          93 PGWERHEDNDG-PYYWHIKSGTIQRDPP  119 (282)
Q Consensus        93 PGWer~sds~G-~YYwhv~Tg~tQWe~P  119 (282)
                      +||+ +..++| .||+|..||++||++|
T Consensus         1 ~gWe-~~~~~g~~YYyN~~T~~s~We~P   27 (27)
T 1e0n_A            1 PGWE-IIHENGRPLYYNAEQKTKLHYPP   27 (27)
T ss_dssp             CCEE-EEESSSSEEEEETTTTEEESSCC
T ss_pred             CCCe-EECCCCCeEEEECCCCCEeccCC
Confidence            6999 889999 9999999999999998

>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1

Probab=98.42  E-value=6.9e-08  Score=74.15  Aligned_cols=37  Identities=32%  Similarity=0.591  Sum_probs=32.2

Q ss_pred             CCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534          86 EAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT  122 (282)
Q Consensus        86 ~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~  122 (282)
                      .....||+||++..+..| +||+|+.|++|||++|...
T Consensus         8 ~~~~~LP~gWe~~~~~~Gr~Yy~n~~t~~t~W~~P~~~   45 (88)
T 1tk7_A            8 DALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQ   45 (88)
T ss_dssp             STTSSSSSSCCEEEETTTEEEEEETTTTEEEEESCCCT
T ss_pred             CccCCCCCCcEEEECCCCCEEEEECCCCCeEeeccccc
Confidence            344579999997778899 9999999999999999764

>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A

Probab=98.34  E-value=9.6e-08  Score=64.97  Aligned_cols=34  Identities=21%  Similarity=0.562  Sum_probs=25.9

Q ss_pred             CCCCCCCCccccccCCc-CEEEEeeCCCcccCCCC
Q psy3534          87 AEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPE  120 (282)
Q Consensus        87 ~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~  120 (282)
                      ....+|++|+.+.+..| .||+|+.|+++||++|.
T Consensus         6 ~~~~~~~~W~e~~~~~G~~YYyN~~T~eS~We~P~   40 (41)
T 1ywi_A            6 SVGSAKSMWTEHKSPDGRTYYYNTETKQSTWEKPD   40 (41)
T ss_dssp             ------CCEEEEEETTTEEEEEETTTTEEEESCC-
T ss_pred             cCCCCCCCcEEEECCCCCEEEEECCCCCEEeCCCC
Confidence            34567999998888899 99999999999999995

>2kxq_A E3 ubiquitin-protein ligase smurf2; WW, smurf2, TGF-beta, modular binding, protein BIN; NMR {Homo sapiens} PDB: 2lb0_A* 2laz_A*

Probab=98.32  E-value=2.4e-07  Score=71.37  Aligned_cols=35  Identities=31%  Similarity=0.618  Sum_probs=31.3

Q ss_pred             CCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534          88 EEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT  122 (282)
Q Consensus        88 ~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~  122 (282)
                      ...||+|||...+..| +||.|+.|++|||++|...
T Consensus        53 ~~~LP~gWe~~~~~~G~~Yy~n~~t~~t~w~~Pr~~   88 (90)
T 2kxq_A           53 LGPLPPGWEIRNTATGRVYFVDHNNRTTQFTDPRLS   88 (90)
T ss_dssp             TCCCCSSCCEEECTTSCEEEEETTTTEEESSCTTTS
T ss_pred             ccccCCCceEEECCCCCEEEEECCCCcEecCCCCcC
Confidence            4579999998788889 9999999999999999764

>1tk7_A CG4244-PB; WW domain, notch, signaling protein; NMR {Drosophila melanogaster} SCOP: b.72.1.1 b.72.1.1

Probab=98.27  E-value=2.6e-07  Score=70.96  Aligned_cols=33  Identities=27%  Similarity=0.606  Sum_probs=30.2

Q ss_pred             CCCCCCCccccccCCc-CEEEEeeCCCcccCCCC
Q psy3534          88 EEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPE  120 (282)
Q Consensus        88 ~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~  120 (282)
                      ...||+||++..+..| +||.|+.|++|||++|.
T Consensus        54 ~~~LP~gWe~~~~~~G~~Yy~nh~t~~ttw~~Pr   87 (88)
T 1tk7_A           54 EGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR   87 (88)
T ss_dssp             SCSSCSSCEEEEETTTEEEEEETTTTEEESSSSC
T ss_pred             ccccCCceEEEECCCCCEEEEECCCCcEeCCCCC
Confidence            4679999998888889 99999999999999995

>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}

Probab=98.19  E-value=4.2e-07  Score=70.42  Aligned_cols=36  Identities=19%  Similarity=0.489  Sum_probs=32.1

Q ss_pred             CCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534          87 AEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT  122 (282)
Q Consensus        87 ~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~  122 (282)
                      ....||+||+++.+.+| +||+|+.||++||++|...
T Consensus         8 ~~~~lp~~W~e~~~~~Gr~YYyN~~T~~s~We~P~~~   44 (92)
T 2l5f_A            8 TASGAKSMWTEHKSPDGRTYYYNTETKQSTWEKPDDL   44 (92)
T ss_dssp             STTBTTTTEEEEECTTSCEEEEETTTTEEESSCSGGG
T ss_pred             cCCCCCCCcEEEEcCCCCEEEEECCCCceecccCccc
Confidence            45679999998888899 9999999999999999753

>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A

Probab=98.14  E-value=8e-07  Score=59.02  Aligned_cols=31  Identities=19%  Similarity=0.464  Sum_probs=27.5

Q ss_pred             CCCCccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534          91 LPPGWERHEDNDG-PYYWHIKSGTIQRDPPEF  121 (282)
Q Consensus        91 LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~  121 (282)
                      ..++|..+.+.+| .||+|+.|+++|||+|..
T Consensus         4 ~~~~W~e~~~~~G~~YYyN~~T~es~We~P~~   35 (37)
T 1e0l_A            4 AVSEWTEYKTADGKTYYYNNRTLESTWEKPQE   35 (37)
T ss_dssp             SSCSCEEEECTTSCEEEEETTTTEEESSCCSS
T ss_pred             CCCCeEEEECCCCCEEEEECCCCCEEecCCCc
Confidence            5679998888889 999999999999999963

>3l4h_A E3 ubiquitin-protein ligase HECW1; E3 ligase, WW domain, UBL-conjugation pathway, structural GE structural genomics consortium, SGC, coiled coil; HET: MSE; 1.80A {Homo sapiens}

Probab=98.11  E-value=1e-06  Score=71.84  Aligned_cols=36  Identities=25%  Similarity=0.516  Sum_probs=32.1

Q ss_pred             CCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534          87 AEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT  122 (282)
Q Consensus        87 ~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~  122 (282)
                      ....||+|||...+.+| +||.++.|++|||++|..+
T Consensus        69 ~~~pLP~GWE~r~d~~Gr~YfIdH~tktTtW~dPRl~  105 (109)
T 3l4h_A           69 TRLELPRGWEIKTDQQGKSFFVDHNSRATTFIDPRIP  105 (109)
T ss_dssp             TTSCCCTTEEEEECTTCCEEEEETTTTEEESSCSCCS
T ss_pred             CCCCCCCCCeEEECCCCCEEEEeCCCCCEeeCCCCcc
Confidence            45679999998788899 9999999999999999865

>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1

Probab=98.11  E-value=4.1e-07  Score=67.19  Aligned_cols=33  Identities=24%  Similarity=0.551  Sum_probs=30.2

Q ss_pred             CCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534          90 QLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT  122 (282)
Q Consensus        90 ~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~  122 (282)
                      .||+||+.+.+..| +||+|+.|++|||++|..+
T Consensus        40 ~lp~gW~~~~~~~Gr~Yy~n~~t~~t~W~~P~~~   73 (75)
T 1o6w_A           40 LRENGWKAAKTADGKVYYYNPTTRETSWTIPAFE   73 (75)
T ss_dssp             HHHHTCEEEECTTCCEEEEETTTTEEESSCCCCC
T ss_pred             CCCCeEEEEECCCCCEEEEECCCCCEECCCCCCC
Confidence            58999998888889 9999999999999999764

>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}

Probab=97.86  E-value=4.7e-06  Score=62.10  Aligned_cols=32  Identities=22%  Similarity=0.615  Sum_probs=29.3

Q ss_pred             CCCCCCccccccCCc-CEEEEeeCCCcccCCCC
Q psy3534          89 EQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPE  120 (282)
Q Consensus        89 ~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~  120 (282)
                      ..||+||+.+.+..| +||+|..|+++||++|.
T Consensus        42 ~~~~~~W~~~~~~~Gr~YyyN~~T~~s~We~P~   74 (75)
T 2jxw_A           42 TAVKTVWVEGLSEDGFTYYYNTETGESRWEKPD   74 (75)
T ss_dssp             SSCCCSEEEEEETTTEEEEEETTTTEEESSCCC
T ss_pred             cCCCccEEEEECCCCCEEEEECcCCCEeccCcC
Confidence            468999998888899 99999999999999996

>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein; 2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1 PDB: 1eg4_A

Probab=97.84  E-value=3.6e-06  Score=76.49  Aligned_cols=33  Identities=27%  Similarity=0.528  Sum_probs=30.2

Q ss_pred             CCCCCCccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534          89 EQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEF  121 (282)
Q Consensus        89 ~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~  121 (282)
                      ..||+|||+..+.+| +||-++.|++|||++|..
T Consensus        10 ~~l~~~we~~~~~~~~~y~~~h~~~tt~w~~p~~   43 (261)
T 1eg3_A           10 TSVQGPWERAISPNKVPYYINHETQTTCWDHPKM   43 (261)
T ss_dssp             TTCCTTEEEEECTTSCEEEEETTTTEEESSCHHH
T ss_pred             CCCCCCcceeECCCCCeEeecCCcccccCCCCch
Confidence            579999997777899 999999999999999974

>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}

Probab=97.75  E-value=5.7e-06  Score=64.01  Aligned_cols=32  Identities=16%  Similarity=0.404  Sum_probs=28.9

Q ss_pred             CCCCCccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534          90 QLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEF  121 (282)
Q Consensus        90 ~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~  121 (282)
                      .||.||+.+.+..| +||+|+.|++|||++|..
T Consensus        52 ~~~~~W~~~~~~~Gr~Yy~N~~T~~s~We~P~~   84 (92)
T 2l5f_A           52 LSKCPWKEYKSDSGKTYYYNSQTKESRWAKPKE   84 (92)
T ss_dssp             HHSCSEEEEECTTCCEEEEETTTTEEESCCCHH
T ss_pred             ccccceEEEECCCCCEEEEECCCCCeeccCchh
Confidence            47899998888899 999999999999999964

>1yw5_A Peptidyl prolyl CIS/trans isomerase; WW-domain, ppiase domain, ordered linker; 1.60A {Candida albicans}

Probab=97.68  E-value=1.9e-05  Score=66.62  Aligned_cols=34  Identities=29%  Similarity=0.600  Sum_probs=31.5

Q ss_pred             CCCCCCcc-ccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534          89 EQLPPGWE-RHEDNDG-PYYWHIKSGTIQRDPPEFT  122 (282)
Q Consensus        89 ~~LPPGWe-r~sds~G-~YYwhv~Tg~tQWe~P~~~  122 (282)
                      ..||+||+ +++++.| .||++..|+.++|++|..+
T Consensus         6 ~~lp~~w~~~~s~s~~~~Yy~~~~~~~~~~~~~~~v   41 (177)
T 1yw5_A            6 TGLPPNWTIRVSRSHNKEYFLNQSTNESSWDPPYGT   41 (177)
T ss_dssp             CCCCTTEEEEECSSTTCEEEEETTTCCEESSCCTTC
T ss_pred             CCCCchHHHHhcccCCchhhhhHHHhhHhhcCcccC
Confidence            56999999 9999999 9999999999999999864

>3olm_A E3 ubiquitin-protein ligase RSP5; ligase; 2.50A {Saccharomyces cerevisiae}

Probab=97.66  E-value=1.8e-05  Score=75.69  Aligned_cols=38  Identities=26%  Similarity=0.469  Sum_probs=32.7

Q ss_pred             CCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCCC
Q psy3534          86 EAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFTY  123 (282)
Q Consensus        86 ~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~~  123 (282)
                      .....||||||...+.+| +||-++.|++|||++|..++
T Consensus         4 ~~~~~lP~gWe~~~~~~g~~y~i~h~~~~t~w~~Pr~~~   42 (429)
T 3olm_A            4 SQLGPLPSGWEMRLTNTARVYFVDHNTKTTTWDDPRLPS   42 (429)
T ss_dssp             -CCCCCCTTCCCCCSSCCCCCEEETTTTEEESSCTTSCC
T ss_pred             ccCCCCCCCceeEECCCCCeEEEeCCCcceeccCCCCCc
Confidence            345679999996667899 99999999999999998765

>1o6w_A PRP40, PRE-mRNA processing protein PRP40; WW domain PAIR, nuclear protein, mRNA splicing, ribonucleoprotein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1 b.72.1.1

Probab=97.61  E-value=1.5e-05  Score=58.78  Aligned_cols=29  Identities=21%  Similarity=0.499  Sum_probs=26.6

Q ss_pred             CCccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534          93 PGWERHEDNDG-PYYWHIKSGTIQRDPPEF  121 (282)
Q Consensus        93 PGWer~sds~G-~YYwhv~Tg~tQWe~P~~  121 (282)
                      +||+...+.+| +||+|+.|+++||++|..
T Consensus         2 ~~W~~~~~~~Gr~YY~n~~T~~s~W~~P~~   31 (75)
T 1o6w_A            2 SIWKEAKDASGRIYYYNTLTKKSTWEKPKE   31 (75)
T ss_dssp             CCEEEEECTTCCEEEEETTTTEEESSCCHH
T ss_pred             CCCeEEECCCCCeEEEECCCCCEEeecchh
Confidence            58998888899 999999999999999964

>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}

Probab=97.49  E-value=2.9e-05  Score=57.84  Aligned_cols=29  Identities=31%  Similarity=0.606  Sum_probs=26.8

Q ss_pred             CCccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534          93 PGWERHEDNDG-PYYWHIKSGTIQRDPPEF  121 (282)
Q Consensus        93 PGWer~sds~G-~YYwhv~Tg~tQWe~P~~  121 (282)
                      .||+++.+..| +||+|+.||++||++|..
T Consensus         5 ~~W~e~~~~~G~~YYyN~~T~~s~We~P~~   34 (75)
T 2jxw_A            5 GRWVEGITSEGYHYYYDLISGASQWEKPEG   34 (75)
T ss_dssp             CCEEEEEETTTEEEEEETTTTEEECSCCSS
T ss_pred             CCcEEEECCCCCEEEEECCCCCEeecCCCc
Confidence            58998888889 999999999999999975

>2dk1_A WW domain-binding protein 4; WBP-4, formin- binding protein 21, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.72.1.1

Probab=97.43  E-value=5.5e-05  Score=53.76  Aligned_cols=28  Identities=32%  Similarity=0.647  Sum_probs=25.0

Q ss_pred             CccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534          94 GWERHEDNDG-PYYWHIKSGTIQRDPPEF  121 (282)
Q Consensus        94 GWer~sds~G-~YYwhv~Tg~tQWe~P~~  121 (282)
                      .|..+....| .||+|+.|+++|||+|..
T Consensus         8 ~W~e~~s~~G~~YYyN~~T~eS~WekP~~   36 (50)
T 2dk1_A            8 RWVEGITSEGYHYYYDLISGASQWEKPEG   36 (50)
T ss_dssp             CEEECCCSTTCCCEEESSSCCEESSCCTT
T ss_pred             CeEEEECCCCCEEEEECCCCCEEeeCChh
Confidence            5987777789 999999999999999975

>1aqc_A X11; PTB domain; 2.30A {Homo sapiens} SCOP: b.55.1.2 PDB: 1x11_A*

Probab=95.86  E-value=0.008  Score=50.80  Aligned_cols=36  Identities=22%  Similarity=0.370  Sum_probs=27.9

Q ss_pred             cceEeEEeeeceeeeccccCCCcchhHH--HHHHHHHhh
Q psy3534         228 KLIRFAVRSLGWVEISEHDLTPERSSKA--VNKCIVDLS  264 (282)
Q Consensus       228 ~~~~FAVRSLGWVEmaEEDLaPGKSSvA--VNnCIrQLS  264 (282)
                      ++++|.||.|||+||. +.-.++.+++.  +..||+.|-
T Consensus         6 ~Gv~f~vkYLGs~eV~-~~~g~~~~~R~~~~~eAi~rl~   43 (172)
T 1aqc_A            6 DGIIFAANYLGSTQLL-SDKTPSKNVRMMQAQEAVSRIK   43 (172)
T ss_dssp             TCEEEEEEEEEEEEEE-CCSSCCHHHHHHHHHHHHHHHH
T ss_pred             CCceEEEEeceEEEec-CCCCCCcchhHHHHHHHHHHHH
Confidence            4579999999999999 45688887743  666666663

>2dk7_A Transcription elongation regulator 1; structural genomics, WW domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.70  E-value=0.0034  Score=48.17  Aligned_cols=28  Identities=14%  Similarity=0.254  Sum_probs=26.1

Q ss_pred             CccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534          94 GWERHEDNDG-PYYWHIKSGTIQRDPPEF  121 (282)
Q Consensus        94 GWer~sds~G-~YYwhv~Tg~tQWe~P~~  121 (282)
                      -|-.+....| +||||..|++++|++|..
T Consensus        21 ~W~~v~T~dGR~fyyN~~Tk~S~WekP~e   49 (73)
T 2dk7_A           21 PWCVVWTGDERVFFYNPTTRLSMWDRPDD   49 (73)
T ss_dssp             SCEEEEESSSCEEEEETTTTEECSSCCTT
T ss_pred             CcEEEECCCCCEEEecCcccceeccCChH
Confidence            3999999999 999999999999999975

>2ej8_A DCC-interacting protein 13 alpha; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.84A {Homo sapiens}

Probab=95.57  E-value=0.012  Score=48.79  Aligned_cols=34  Identities=21%  Similarity=0.240  Sum_probs=29.3

Q ss_pred             cceEeEEeeeceeeeccccCCCcchhHHHHHHHHHhhcc
Q psy3534         228 KLIRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLG  266 (282)
Q Consensus       228 ~~~~FAVRSLGWVEmaEEDLaPGKSSvAVNnCIrQLSy~  266 (282)
                      -.++|.||.|||+|+.+.     |+..++..||++|-..
T Consensus        14 ~~~~f~vkYLGs~eV~~~-----~g~~~~~~Ai~~l~~~   47 (160)
T 2ej8_A           14 LHQLFIVRFLGSMEVKSD-----DHPDVVYETMRQILAA   47 (160)
T ss_dssp             CEEEEEEEEEEEEEECCC-----SCTHHHHHHHHHHHHH
T ss_pred             cccEEEEEeeeEEEeCCC-----CCHHHHHHHHHHHHHh
Confidence            357999999999999863     7888999999999754

>2ela_A Adapter protein containing PH domain, PTB domain and leucine zipper motif 1; APPL, cell cycle; 2.00A {Homo sapiens}

Probab=95.16  E-value=0.017  Score=49.05  Aligned_cols=34  Identities=21%  Similarity=0.262  Sum_probs=29.4

Q ss_pred             cceEeEEeeeceeeeccccCCCcchhHHHHHHHHHhhcc
Q psy3534         228 KLIRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLG  266 (282)
Q Consensus       228 ~~~~FAVRSLGWVEmaEEDLaPGKSSvAVNnCIrQLSy~  266 (282)
                      -.++|.||.|||+|+.+     .|+..++..||++|...
T Consensus        27 ~~~~f~vkYLGs~eV~~-----~~g~~v~~eAi~~l~~~   60 (175)
T 2ela_A           27 LHQLFIVRFLGSMEVKS-----DDHPDVVYETMRQILAA   60 (175)
T ss_dssp             CCEEEEEEEEEEEEECS-----CCSTHHHHHHHHHHHHH
T ss_pred             ccceEEEEcceEEEecC-----CCCHHHHHHHHHHHHHh
Confidence            35799999999999986     38888999999999754

>3le4_A Microprocessor complex subunit DGCR8; WW motif, dimerization, 3D domain swapping, heme binding, MI processing, heme, iron, metal-binding, nucleus; 1.70A {Homo sapiens}

Probab=92.81  E-value=0.053  Score=42.16  Aligned_cols=38  Identities=34%  Similarity=0.587  Sum_probs=32.9

Q ss_pred             CCCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534          85 VEAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT  122 (282)
Q Consensus        85 ~~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~  122 (282)
                      ......||.||-.+.-.+| .-|+|..|+-..|-+|---
T Consensus        23 ~~~~~~LPeGW~~v~H~SGmP~YlH~~trV~T~SrPY~l   61 (79)
T 3le4_A           23 RPPTEPLPDGWIMTFHNSGVPVYLHRESRVVTWSRPYFL   61 (79)
T ss_dssp             -CCCCCCCTTEEEEECTTSSEEEEETTTTEEESSCCCCC
T ss_pred             CCcCCcCCCccEEEEecCCceEEEeccceEEeccCCeEe
Confidence            3455679999999999999 9999999999999999653

>3so6_A LDL receptor adaptor protein; PTB, endocytic adaptor, autosomal reces hypercholesterolemia, ARH, cholesterol; 1.37A {Rattus norvegicus}

Probab=92.24  E-value=0.14  Score=40.30  Aligned_cols=33  Identities=9%  Similarity=0.216  Sum_probs=28.5

Q ss_pred             cceEeEEeeeceeeeccccCCCcchhHHHHHHHHHhhc
Q psy3534         228 KLIRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSL  265 (282)
Q Consensus       228 ~~~~FAVRSLGWVEmaEEDLaPGKSSvAVNnCIrQLSy  265 (282)
                      ++++|.|+.||+++|.+.     +...+++++|+.|-.
T Consensus         2 ~g~~f~v~YLGs~~v~~~-----~g~~~~~~Av~~l~~   34 (137)
T 3so6_A            2 EGMVFSLKYLGMTLVERP-----KGEELSAAAVKRIVA   34 (137)
T ss_dssp             CCEEEEEEEEEEEEESSS-----CCHHHHHHHHHHHHH
T ss_pred             CccEEEEEEeeEEEecCC-----CChhHHHHHHHHHHH
Confidence            568999999999999874     678889999999854

>1n3h_A SHC transforming protein; free protein, beta sandwich, signaling protein; NMR {Homo sapiens} SCOP: b.55.1.2 PDB: 1oy2_A 2l1c_A* 1shc_A*

Probab=91.73  E-value=0.18  Score=43.91  Aligned_cols=38  Identities=18%  Similarity=0.260  Sum_probs=32.9

Q ss_pred             cceEeEEeeeceeeeccc--cCCCcchhHHHHHHHHHhhc
Q psy3534         228 KLIRFAVRSLGWVEISEH--DLTPERSSKAVNKCIVDLSL  265 (282)
Q Consensus       228 ~~~~FAVRSLGWVEmaEE--DLaPGKSSvAVNnCIrQLSy  265 (282)
                      +.+.|.|+.||+|||.+.  .|..++-.-.+..||+.|-.
T Consensus        48 ~gv~f~vkYLGs~eV~~~~r~~~~~~g~~v~~eAi~rv~~   87 (207)
T 1n3h_A           48 PGVSYLVRYMGCVEVLQSMRALDFNTRTQVTREAISLVCE   87 (207)
T ss_dssp             TCEEEEEEEECEEECCCCSSCSSSCCHHHHHHHHHHHHHH
T ss_pred             CCceEEEEecceEEeccccccCCccchHHHHHHHHHHHHH
Confidence            567999999999999976  78888888888999999864

>2dyq_A Amyloid beta A4 precursor protein-binding family 3; phosphotyrosine-interaction domain (PTB/PID alzheimer'S disease, structural genomics, NPPSFA; 3.10A {Homo sapiens}

Probab=80.19  E-value=1.4  Score=36.95  Aligned_cols=31  Identities=13%  Similarity=0.272  Sum_probs=27.4

Q ss_pred             eEeEEeeeceeeeccccCCCcchhHHHHHHHHHhhc
Q psy3534         230 IRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSL  265 (282)
Q Consensus       230 ~~FAVRSLGWVEmaEEDLaPGKSSvAVNnCIrQLSy  265 (282)
                      .+|.|..||+||++.     -+.--.||.+|+.|-.
T Consensus        16 ~~f~~kyLGsv~V~~-----~~G~dVln~Ai~~l~~   46 (144)
T 2dyq_A           16 QKYEALYMGTLPVTK-----AMGMDVLNEAIGTLTA   46 (144)
T ss_dssp             CCCEEEEEEEEEESS-----SCCHHHHHHHHHHHHC
T ss_pred             hEEEEEEeccEEecC-----ccCHHHHHHHHHHHHh
Confidence            489999999999998     5778999999999943

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	282
d2ho2a1	33	b.72.1.1 (A:253-285) Amyloid beta A4 precursor pro	4e-12
d2ysca1	26	b.72.1.1 (A:8-33) Amyloid beta A4 precursor protei	4e-06
d1i5hw_	50	b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain	4e-05
d1jmqa_	46	b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens	6e-05
d1tk7a1	45	b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb)	1e-04
d1pina1	34	b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Ho	2e-04
d2jmfa1	33	b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII	3e-04

>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]} Length = 33

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Amyloid beta A4 precursor protein-binding family B member 1, APBB1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (139), Expect = 4e-12
 Identities = 17/29 (58%), Positives = 20/29 (68%)

Query: 91  LPPGWERHEDNDGPYYWHIKSGTIQRDPP 119
           LP GW R +D  G YYWHI +GT Q +PP
Sbjct: 3   LPAGWMRVQDTSGTYYWHIPTGTTQWEPP 31

>d2ysca1 b.72.1.1 (A:8-33) Amyloid beta A4 precursor protein-binding family B member 3, APBB3 {Human (Homo sapiens) [TaxId: 9606]} Length = 26

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Amyloid beta A4 precursor protein-binding family B member 3, APBB3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (95), Expect = 4e-06
 Identities = 14/25 (56%), Positives = 17/25 (68%)

Query: 91  LPPGWERHEDNDGPYYWHIKSGTIQ 115
           LPPGW +  D  G YYWH+ SG+ Q
Sbjct: 2   LPPGWRKIHDAAGTYYWHVPSGSTQ 26

>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 50

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.2 bits (89), Expect = 4e-05
 Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 1/38 (2%)

Query: 83  SSVEAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPP 119
                   LPPGWE     DG  ++ +      Q + P
Sbjct: 4   VDSNDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDP 41

>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]} Length = 46

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Yap65 ww domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (88), Expect = 6e-05
 Identities = 9/33 (27%), Positives = 14/33 (42%), Gaps = 1/33 (3%)

Query: 88  EEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPP 119
           +  LP GWE  + + G  Y+ +    T     P
Sbjct: 6   DVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDP 38

>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 45

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Suppressor of deltex (Cg4244-pb)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.6 bits (85), Expect = 1e-04
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)

Query: 91  LPPGWERHEDNDG-PYYWHIKSGTIQRDPP 119
           LP GWE+   +D   Y+ + K+ T Q + P
Sbjct: 13  LPDGWEKKIQSDNRVYFVNHKNRTTQWEDP 42

>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]} Length = 34

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Mitotic rotamase PIN1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (84), Expect = 2e-04
 Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)

Query: 90  QLPPGWERHEDNDG--PYYWHIKSGTIQRDPP 119
           +LPPGWE+         YY++  +   Q + P
Sbjct: 1   KLPPGWEKRMSRSSGRVYYFNHITNASQWERP 32

>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 33

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 35.0 bits (81), Expect = 3e-04
 Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 1/30 (3%)

Query: 91  LPPGWERHEDNDG-PYYWHIKSGTIQRDPP 119
           LPPGWE      G  ++    +     + P
Sbjct: 3   LPPGWEIRYTAAGERFFVDHNTRRTTFEDP 32

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	282
d2ho2a1	33	Amyloid beta A4 precursor protein-binding family B	99.67
d2ysca1	26	Amyloid beta A4 precursor protein-binding family B	99.42
d1jmqa_	46	Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606	99.07
d1pina1	34	Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId	99.06
d2jmfa1	33	Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Dr	99.02
d1i5hw_	50	Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus n	98.96
d1tk7a1	45	Suppressor of deltex (Cg4244-pb) {Fruit fly (Droso	98.93
d2rm0w1	37	Formin binding protein FBP28 domain {Domestic mous	98.23
d1o6wa2	46	Splicing factor prp40 {Baker's yeast (Saccharomyce	98.14
d1o6wa1	29	Splicing factor prp40 {Baker's yeast (Saccharomyce	98.12
d1ywia1	28	Huntingtin-interacting protein HYPA/FBP11 {Human (	98.1
d2dk1a1	38	WW domain-binding protein 4, WBP4 {Human (Homo sap	97.96
d1aqca_	166	X11 {Human (Homo sapiens) [TaxId: 9606]}	96.95
d1oy2a_	191	Shc adaptor protein {Human (Homo sapiens) [TaxId:	93.29
d1wj1a_	156	Numb {Mouse (Mus musculus) [TaxId: 10090]}	92.82
d1wgua_	136	Amyloid beta A4 precursor protein-binding family B	92.77
d1eg3a3	38	Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	92.71
d1ntva_	152	Disabled homolog 1 (Dab1) {Mouse (Mus musculus) [T	92.65
d1p3ra_	148	Disabled homolog 2 (Dab2) {Mouse (Mus musculus) [T	92.52
d1ddma_	135	Numb {Fruit fly (Drosophila melanogaster) [TaxId:	90.46

>d2ho2a1 b.72.1.1 (A:253-285) Amyloid beta A4 precursor protein-binding family B member 1, APBB1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Amyloid beta A4 precursor protein-binding family B member 1, APBB1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=4.3e-18  Score=111.41  Aligned_cols=31  Identities=55%  Similarity=1.244  Sum_probs=30.1

Q ss_pred             CCCCCccccccCCcCEEEEeeCCCcccCCCC
Q psy3534          90 QLPPGWERHEDNDGPYYWHIKSGTIQRDPPE  120 (282)
Q Consensus        90 ~LPPGWer~sds~G~YYwhv~Tg~tQWe~P~  120 (282)
                      +|||||+++.|+.|+|||||+||+|||++|.
T Consensus         2 dLPpGW~ki~D~~G~YYWHiptGttQwe~P~   32 (33)
T d2ho2a1           2 DLPAGWMRVQDTSGTYYWHIPTGTTQWEPPG   32 (33)
T ss_dssp             CSCTTEEEEECSSCEEEEETTTTEEESSCCC
T ss_pred             CCCCcceeeecCCCceEEEecCCcccccCCC
Confidence            7999999999999999999999999999995

>d2ysca1 b.72.1.1 (A:8-33) Amyloid beta A4 precursor protein-binding family B member 3, APBB3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Amyloid beta A4 precursor protein-binding family B member 3, APBB3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.4e-14  Score=90.02  Aligned_cols=26  Identities=54%  Similarity=1.303  Sum_probs=25.0

Q ss_pred             CCCCCccccccCCcCEEEEeeCCCcc
Q psy3534          90 QLPPGWERHEDNDGPYYWHIKSGTIQ  115 (282)
Q Consensus        90 ~LPPGWer~sds~G~YYwhv~Tg~tQ  115 (282)
                      .|||||++++|+.|+|||||+||+||
T Consensus         1 ~LPpGW~~i~D~ag~YyWHiPtGtTQ   26 (26)
T d2ysca1           1 GLPPGWRKIHDAAGTYYWHVPSGSTQ   26 (26)
T ss_dssp             CCCTTEEEEEETTEEEEEESSSCCEE
T ss_pred             CcCccceeeeccCceEEEeccCCccC
Confidence            49999999999999999999999998

>d1jmqa_ b.72.1.1 (A:) Yap65 ww domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Yap65 ww domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.8e-11  Score=83.57  Aligned_cols=38  Identities=24%  Similarity=0.497  Sum_probs=34.0

Q ss_pred             CCCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534          85 VEAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT  122 (282)
Q Consensus        85 ~~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~  122 (282)
                      ++.+.+||+|||+..+..| +||+|+.|++|||++|...
T Consensus         3 ~~~~~~LP~GWe~~~d~~G~~Yyinh~t~~T~w~~Pr~~   41 (46)
T d1jmqa_           3 IPDDVPLPAGWEMAKTSSGQRYFKNHIDQTTTWQDPRKA   41 (46)
T ss_dssp             CCSSCCCCTTBCCBCCSSCCCBEEETTTTEEESSCTTTS
T ss_pred             CCccCCCCCCceEEECCCCCEEEEECCCCCEecCCCCcc
Confidence            4667789999998888999 9999999999999999753

>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Mitotic rotamase PIN1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.4e-11  Score=78.83  Aligned_cols=32  Identities=34%  Similarity=0.785  Sum_probs=28.6

Q ss_pred             CCCCCcccccc-CCc-CEEEEeeCCCcccCCCCC
Q psy3534          90 QLPPGWERHED-NDG-PYYWHIKSGTIQRDPPEF  121 (282)
Q Consensus        90 ~LPPGWer~sd-s~G-~YYwhv~Tg~tQWe~P~~  121 (282)
                      .||+||+...| .+| .||+|+.||+|||++|++
T Consensus         1 ~LP~GW~~~~d~~~G~~YY~n~~T~~T~W~~Pt~   34 (34)
T d1pina1           1 KLPPGWEKRMSRSSGRVYYFNHITNASQWERPSG   34 (34)
T ss_dssp             CCCTTEEEEECTTSCCEEEEETTTCCEESSCSCC
T ss_pred             CcCCCcEEEECCCCCCEEEEECCCCCEEccCCCC
Confidence            49999997777 579 999999999999999974

>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.02  E-value=4.3e-11  Score=77.68  Aligned_cols=31  Identities=26%  Similarity=0.615  Sum_probs=29.2

Q ss_pred             CCCCCccccccCCc-CEEEEeeCCCcccCCCC
Q psy3534          90 QLPPGWERHEDNDG-PYYWHIKSGTIQRDPPE  120 (282)
Q Consensus        90 ~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~  120 (282)
                      +||+|||+..+.+| +||.|+.|++|||++|.
T Consensus         2 pLP~GWe~~~d~~G~~Yyinh~t~~T~w~~PR   33 (33)
T d2jmfa1           2 PLPPGWEIRYTAAGERFFVDHNTRRTTFEDPR   33 (33)
T ss_dssp             CCCTTEEEEECTTSCEEEEETTTCCEESSCCC
T ss_pred             ccCCCeeEEECCCCCEEEEECCCCcEecCCCC
Confidence            69999998888999 99999999999999984

>d1i5hw_ b.72.1.1 (W:) Ubiquitin ligase NEDD4 WWIII domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Ubiquitin ligase NEDD4 WWIII domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.96  E-value=1e-10  Score=81.97  Aligned_cols=37  Identities=27%  Similarity=0.624  Sum_probs=32.6

Q ss_pred             CCCCCCCCCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534          86 EAEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPEFT  122 (282)
Q Consensus        86 ~~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~~~  122 (282)
                      ....+||+|||+..+..| +||+|+.|++|||++|...
T Consensus         7 ~~~~pLP~gWe~~~~~~G~~YY~nh~t~~T~w~~Pr~~   44 (50)
T d1i5hw_           7 NDLGPLPPGWEERTHTDGRVFFINHNIKKTQWEDPRMQ   44 (50)
T ss_dssp             SCCSSCSTTEEEEECTTSCEEEEETTTTEEESSCTTTS
T ss_pred             CCCCCCCCCceEEECCCCCEEEEECCCCCEeCCCCCCC
Confidence            345679999998888999 9999999999999999753

>d1tk7a1 b.72.1.1 (A:1-45) Suppressor of deltex (Cg4244-pb) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Suppressor of deltex (Cg4244-pb)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.93  E-value=1.6e-10  Score=79.47  Aligned_cols=34  Identities=35%  Similarity=0.638  Sum_probs=30.4

Q ss_pred             CCCCCCCCccccccCCc-CEEEEeeCCCcccCCCC
Q psy3534          87 AEEQLPPGWERHEDNDG-PYYWHIKSGTIQRDPPE  120 (282)
Q Consensus        87 ~~~~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~  120 (282)
                      ...+||+|||+..+..| +||+|+.|++|||++|.
T Consensus         9 ~~gpLP~GWe~~~d~~G~~Yyinh~t~~T~w~~PR   43 (45)
T d1tk7a1           9 ALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPR   43 (45)
T ss_dssp             TTSSSSSSCCEEEETTTEEEEEETTTTEEEEESCC
T ss_pred             CCCCCCCCceEEECCCCCEEEEECCCCCEECCCCC
Confidence            33579999998778899 99999999999999995

>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Formin binding protein FBP28 domain
species: Domestic mouse (Mus musculus) [TaxId: 10090]

Probab=98.23  E-value=1.6e-07  Score=61.86  Aligned_cols=31  Identities=19%  Similarity=0.506  Sum_probs=28.6

Q ss_pred             CCCCCccccccCCc-CEEEEeeCCCcccCCCC
Q psy3534          90 QLPPGWERHEDNDG-PYYWHIKSGTIQRDPPE  120 (282)
Q Consensus        90 ~LPPGWer~sds~G-~YYwhv~Tg~tQWe~P~  120 (282)
                      .++..|+.+.+..| +||||..|++|||++|.
T Consensus         3 ~~~s~W~e~~~~~Gr~YY~N~~T~~s~We~P~   34 (37)
T d2rm0w1           3 TAVSEWTEYKTADGKTYYYNNRTLESTWEKPQ   34 (37)
T ss_dssp             CCSCCEEEEECTTCCEEEEETTTTEEESSCCS
T ss_pred             CCccCCEEEECCCCCEEEEECCCCCEeCCCcc
Confidence            46788999999999 99999999999999996

>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Splicing factor prp40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.14  E-value=2.9e-07  Score=63.40  Aligned_cols=30  Identities=27%  Similarity=0.654  Sum_probs=27.4

Q ss_pred             CCccccccCCc-CEEEEeeCCCcccCCCCCC
Q psy3534          93 PGWERHEDNDG-PYYWHIKSGTIQRDPPEFT  122 (282)
Q Consensus        93 PGWer~sds~G-~YYwhv~Tg~tQWe~P~~~  122 (282)
                      -||..+.+..| +||||..||+|||++|...
T Consensus        14 ~~W~e~~~~~Gr~YYyN~~T~es~We~P~~~   44 (46)
T d1o6wa2          14 NGWKAAKTADGKVYYYNPTTRETSWTIPAFE   44 (46)
T ss_dssp             HTCEEEECTTCCEEEEETTTTEEESSCCCCC
T ss_pred             CCCeEEECCCCCEEEEECCCCCEecCCCccc
Confidence            38999999999 9999999999999999763

>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Splicing factor prp40
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.12  E-value=3.1e-07  Score=58.03  Aligned_cols=26  Identities=23%  Similarity=0.585  Sum_probs=24.6

Q ss_pred             CccccccCCc-CEEEEeeCCCcccCCC
Q psy3534          94 GWERHEDNDG-PYYWHIKSGTIQRDPP  119 (282)
Q Consensus        94 GWer~sds~G-~YYwhv~Tg~tQWe~P  119 (282)
                      .|..+.+..| +||+|..|++|||++|
T Consensus         3 ~W~e~~~~~G~~YYyN~~T~eS~WekP   29 (29)
T d1o6wa1           3 IWKEAKDASGRIYYYNTLTKKSTWEKP   29 (29)
T ss_dssp             CEEEEECTTCCEEEEETTTTEEESSCC
T ss_pred             ccEEEECCCCCEEEeECCCCCEecCCC
Confidence            5888999999 9999999999999998

>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Huntingtin-interacting protein HYPA/FBP11
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=2.9e-07  Score=57.72  Aligned_cols=26  Identities=27%  Similarity=0.736  Sum_probs=24.5

Q ss_pred             CccccccCCc-CEEEEeeCCCcccCCC
Q psy3534          94 GWERHEDNDG-PYYWHIKSGTIQRDPP  119 (282)
Q Consensus        94 GWer~sds~G-~YYwhv~Tg~tQWe~P  119 (282)
                      .|..+.+..| +||+|..|++|||++|
T Consensus         2 ~W~e~~~~~G~~YYyN~~T~eS~We~P   28 (28)
T d1ywia1           2 MWTEHKSPDGRTYYYNTETKQSTWEKP   28 (28)
T ss_dssp             CEEEEEETTTEEEEEETTTTEEEESCC
T ss_pred             ccEEEECCCCCEEEeECCCCCEecCCC
Confidence            5888999999 9999999999999998

>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: WW domain-binding protein 4, WBP4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=1.3e-06  Score=57.82  Aligned_cols=28  Identities=32%  Similarity=0.647  Sum_probs=25.9

Q ss_pred             CccccccCCc-CEEEEeeCCCcccCCCCC
Q psy3534          94 GWERHEDNDG-PYYWHIKSGTIQRDPPEF  121 (282)
Q Consensus        94 GWer~sds~G-~YYwhv~Tg~tQWe~P~~  121 (282)
                      .|..+.+..| +||||..||++||++|..
T Consensus         2 ~W~e~~~~~G~~YYyN~~T~eS~We~P~~   30 (38)
T d2dk1a1           2 RWVEGITSEGYHYYYDLISGASQWEKPEG   30 (38)
T ss_dssp             CEEECCCSTTCCCEEESSSCCEESSCCTT
T ss_pred             CCeEEECCCCCEEEEECCCCCEecCCChh
Confidence            4888899999 999999999999999975

>d1aqca_ b.55.1.2 (A:) X11 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: X11
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00037  Score=56.07  Aligned_cols=45  Identities=24%  Similarity=0.347  Sum_probs=32.1

Q ss_pred             cceEeEEeeeceeeeccccCCCcchhH------HHHHHHHHhhcccCCCccc
Q psy3534         228 KLIRFAVRSLGWVEISEHDLTPERSSK------AVNKCIVDLSLGRNHHSTI  273 (282)
Q Consensus       228 ~~~~FAVRSLGWVEmaEEDLaPGKSSv------AVNnCIrQLSy~RnDirD~  273 (282)
                      +++.|+||.|||+||. +...++++++      |||+|+......|+.....
T Consensus         6 ~Gi~f~vkYLGs~~V~-~~~~~~~~~r~~~~~eAi~ri~~~~~~~~~~~~~~   56 (166)
T d1aqca_           6 DGIIFAANYLGSTQLL-SDKTPSKNVRMMQAQEAVSRIKMAQKLAKSRKKAP   56 (166)
T ss_dssp             TCEEEEEEEEEEEEEE-CCSSCCHHHHHHHHHHHHHHHHHHHHCC-------
T ss_pred             CCcEEEeEEeeEEEec-cCCCCccchhHHHHHHHHHHHHHhhhccccccccc
Confidence            4489999999999995 6778988885      8999988877777665443

>d1oy2a_ b.55.1.2 (A:) Shc adaptor protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Shc adaptor protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.29  E-value=0.041  Score=45.31  Aligned_cols=38  Identities=16%  Similarity=0.242  Sum_probs=30.3

Q ss_pred             ccceEeEEeeeceeeeccccCCCc--chhHHHHHHHHHhh
Q psy3534         227 DKLIRFAVRSLGWVEISEHDLTPE--RSSKAVNKCIVDLS  264 (282)
Q Consensus       227 ~~~~~FAVRSLGWVEmaEEDLaPG--KSSvAVNnCIrQLS  264 (282)
                      .+.++|.||.||++||.|.+-.+.  +-...+..||+.|.
T Consensus        31 ~~gv~f~akYLGs~eV~~s~r~~~~~~r~~i~~eAI~ri~   70 (191)
T d1oy2a_          31 GPGVSYLVRYMGCVEVLQSMRALDFNTRTQVTREAISLVC   70 (191)
T ss_dssp             TTCEEEEEEEEEEEECCCSSSSSSSCCHHHHHHHHHHHHH
T ss_pred             cCCeEEEEEEeeEEEeccccccCcccchHHHHHHHHHHHH
Confidence            356899999999999999877775  44567778888774

>d1wj1a_ b.55.1.2 (A:) Numb {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Numb
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.82  E-value=0.043  Score=42.73  Aligned_cols=36  Identities=25%  Similarity=0.377  Sum_probs=29.8

Q ss_pred             ceEeEEeeeceeeeccccCCCcchhHHHHHHHHHhhcccCC
Q psy3534         229 LIRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLGRNH  269 (282)
Q Consensus       229 ~~~FAVRSLGWVEmaEEDLaPGKSSvAVNnCIrQLSy~RnD  269 (282)
                      ...|.|+.||+++|.+-     ++...|+.||++|-.-+..
T Consensus        25 ~~~f~v~YLGs~~v~~~-----~g~~~v~~ai~~l~~~~~k   60 (156)
T d1wj1a_          25 KCSFPVKYLGHVEVDES-----RGMHICEDAVKRLKATGKK   60 (156)
T ss_dssp             CCEEEEEEEEEEECSSS-----CCHHHHHHHHHHHHHHTCC
T ss_pred             CeeEEEEEEEEEEeCCC-----CCHHHHHHHHHHHHhcCCC
Confidence            35799999999999884     6778999999999765543

>d1wgua_ b.55.1.2 (A:) Amyloid beta A4 precursor protein-binding family B member 2, Apbb2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Amyloid beta A4 precursor protein-binding family B member 2, Apbb2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.77  E-value=0.054  Score=41.62  Aligned_cols=29  Identities=24%  Similarity=0.434  Sum_probs=26.3

Q ss_pred             EeEEeeeceeeeccccCCCcchhHHHHHHHHHhh
Q psy3534         231 RFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLS  264 (282)
Q Consensus       231 ~FAVRSLGWVEmaEEDLaPGKSSvAVNnCIrQLS  264 (282)
                      +|-|+.||+++|.+     -++...|++||++|.
T Consensus        17 ~f~vkYLGs~~V~~-----~~G~~~v~~Ai~~l~   45 (136)
T d1wgua_          17 KFRVQYLGMLPVDR-----PVGMDTLNSAIENLM   45 (136)
T ss_dssp             CEEEEEEEEEECSC-----SSCSHHHHHHHHHHH
T ss_pred             EEEEEEEEEEEcCC-----CCchHHHHHHHHHHH
Confidence            79999999999987     368899999999995

>d1eg3a3 b.72.1.1 (A:47-84) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: WW domain-like
superfamily: WW domain
family: WW domain
domain: Dystrophin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.71  E-value=0.015  Score=38.27  Aligned_cols=25  Identities=32%  Similarity=0.550  Sum_probs=22.3

Q ss_pred             CCccccccCCc-CEEEEeeCCCcccC
Q psy3534          93 PGWERHEDNDG-PYYWHIKSGTIQRD  117 (282)
Q Consensus        93 PGWer~sds~G-~YYwhv~Tg~tQWe  117 (282)
                      +-|||....+. .||-|+.|.+||||
T Consensus        13 ~PWeRait~n~VPYYINH~~e~T~WD   38 (38)
T d1eg3a3          13 GPWERAISPNKVPYYINHETQTTCWD   38 (38)
T ss_dssp             TTEEEEECTTSCEEEEETTTTEEESS
T ss_pred             cchhhhccccCCCeEeecccccccCC
Confidence            34998887888 99999999999997

>d1ntva_ b.55.1.2 (A:) Disabled homolog 1 (Dab1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Disabled homolog 1 (Dab1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.65  E-value=0.049  Score=41.91  Aligned_cols=32  Identities=22%  Similarity=0.422  Sum_probs=27.7

Q ss_pred             cceEeEEeeeceeeeccccCCCcchhHHHHHHHHHhh
Q psy3534         228 KLIRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLS  264 (282)
Q Consensus       228 ~~~~FAVRSLGWVEmaEEDLaPGKSSvAVNnCIrQLS  264 (282)
                      ..++|.|+.||+|++.+.     ++.-.|++||.+|-
T Consensus        16 ~gv~f~vkYLG~v~V~~~-----~g~~~~~~ai~~l~   47 (152)
T d1ntva_          16 EGVRYKAKLIGIDEVSAA-----RGDKLCQDSMMKLK   47 (152)
T ss_dssp             TCEEEEEEEEEEEECSSS-----CCHHHHHHHHHHHH
T ss_pred             CCcEEEEEEEEEEEecCC-----CCHHHHHHHHHHHH
Confidence            456999999999999983     67889999999984

>d1p3ra_ b.55.1.2 (A:) Disabled homolog 2 (Dab2) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Disabled homolog 2 (Dab2)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.52  E-value=0.055  Score=41.75  Aligned_cols=31  Identities=13%  Similarity=0.400  Sum_probs=24.4

Q ss_pred             cceEeEEeeeceeeeccccCCCcchhHHHHHHHHHh
Q psy3534         228 KLIRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDL  263 (282)
Q Consensus       228 ~~~~FAVRSLGWVEmaEEDLaPGKSSvAVNnCIrQL  263 (282)
                      ..+.|.||.||+||+.+.     +..-.+++||++|
T Consensus        15 ~gv~f~vkYLGs~~V~~~-----~G~~~~~~Ai~~l   45 (148)
T d1p3ra_          15 DGVKYKAKLIGIDDVPDA-----RGDKMSQDSMMKL   45 (148)
T ss_dssp             TCEEEEEEEEEEEEESSS-----CCHHHHHHHHHHH
T ss_pred             CCeEEEEEEEEEEEecCC-----CChHHHHHHHHHH
Confidence            446999999999999874     4455678888776

>d1ddma_ b.55.1.2 (A:) Numb {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PH domain-like barrel
superfamily: PH domain-like
family: Phosphotyrosine-binding domain (PTB)
domain: Numb
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=90.46  E-value=0.056  Score=40.89  Aligned_cols=35  Identities=29%  Similarity=0.411  Sum_probs=27.7

Q ss_pred             cceEeEEeeeceeeeccccCCCcchhHHHHHHHHHhhccc
Q psy3534         228 KLIRFAVRSLGWVEISEHDLTPERSSKAVNKCIVDLSLGR  267 (282)
Q Consensus       228 ~~~~FAVRSLGWVEmaEEDLaPGKSSvAVNnCIrQLSy~R  267 (282)
                      +..+|.|+.||++++.+.     |+.-++++||++|--.+
T Consensus        13 ~~~sf~v~YLGs~~v~~~-----~g~~~i~~ai~~l~~~~   47 (135)
T d1ddma_          13 ATCSFSVKYLGCVEVFES-----RGMQVCEEALKVLRQSR   47 (135)
T ss_dssp             TCCCCEEECCEEEECSCC-----SCSTHHHHHHHHHHHSS
T ss_pred             CCeEEEEEEeEEEEeCCC-----CCHHHHHHHHHHHHHcC
Confidence            335799999999999884     56678999999995433