Psyllid ID: psy3543

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250
AERLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELPKLKANTCNPLLSRMTLHGILDSTHPSGDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYTHYAEGKIDY
cccccccccccEEEEEEcccHHHHHHHHHHcccccccccccccccccccccccccEEEEcccccHHHHccccccccccccccHHHHHHHccccccccEEEEEccccccccHHHHHHHHHHHHcccEEEEEEEccccccccccccEEEEEEEEcccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccEEEEccccEEEEEEEcc
cccHHHHHcccEEEEEEcccHHHHHHHHHHcccccEEcccccEccHHHccccccEEEEEcccccHHHHHccccccccccccHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHcccEEEEEEEcHHHcccccccEEEEEEEEEccccccccccccccccccHHHcccHHHcccccccccccccccccccccccccccccccccHHHHHHHHHHccEEcccccccEEEEccccEEEEccccc
aerlsnhafSLEVVTAIdintsansvykhnfprtnlrgrniqsfSIEEinamspdvilmsppcqpftrtglqkDIADARCTALSYLIETIPAIPSLQCLLLenvkgfegsrsRDLITSMLTRAgfrfqefllsptqfgvpnsrTRYYLIAkrspaahsseasfcFETSSELMTelpklkantcnpllsrmtlhgildsthpsgdlyrrylvsdkdllrrfhvfdivngkasstncfTKAYTHyaegkidy
aerlsnhafsLEVVTaidintsansvykhnfprtnlrgrNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFqefllsptqfgvpNSRTRYYLIAKrspaahsseaSFCFETSSELMTELPKLKANTCNPLLSRMTLHGIldsthpsgdLYRRYLVSDKDLLRRFHVFDivngkasstncftKAYTHYAEGKIDY
AERLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELPKLKANTCNPLLSRMTLHGILDSTHPSGDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYTHYAEGKIDY
*******AFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAK***********FCFET***LMTELPKLKANTCNPLLSRMTLHGILDSTHPSGDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYTHYA******
AERLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELPKLKANTCNPLLSRMTLHGILDSTHPSGDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYTHYAEGKI**
AERLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAK**********SFCFETSSELMTELPKLKANTCNPLLSRMTLHGILDSTHPSGDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYTHYAEGKIDY
**RLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELPKLKANTCNPLLSRMTLHGILDSTHPSGDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYTHYAEGKID*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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AERLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELPKLKANTCNPLLSRMTLHGILDSTHPSGDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYTHYAEGKIDY
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query250 2.2.26 [Sep-21-2011]
Q7YS61391 tRNA (cytosine-5-)-methyl yes N/A 0.916 0.585 0.365 1e-44
Q4G073391 tRNA (cytosine(38)-C(5))- yes N/A 0.892 0.570 0.374 4e-44
O14717391 tRNA (cytosine(38)-C(5))- yes N/A 0.916 0.585 0.358 6e-43
O55055 415 tRNA (cytosine(38)-C(5))- yes N/A 0.912 0.549 0.366 1e-41
Q54JH6379 DNA (cytosine-5)-methyltr yes N/A 0.96 0.633 0.324 5e-31
P40999330 tRNA (cytosine(38)-C(5))- yes N/A 0.864 0.654 0.320 1e-28
P45000304 Modification methylase Hi yes N/A 0.636 0.523 0.307 1e-11
P24581313 Cytosine-specific methylt yes N/A 0.38 0.303 0.383 3e-11
P19888 428 Modification methylase Ba N/A N/A 0.524 0.306 0.314 5e-09
O30868318 Modification methylase Ha N/A N/A 0.548 0.430 0.292 1e-08
>sp|Q7YS61|TRDMT_BOVIN tRNA (cytosine-5-)-methyltransferase OS=Bos taurus GN=TRDMT1 PE=2 SV=1 Back     alignment and function desciption
 Score =  179 bits (455), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 103/282 (36%), Positives = 148/282 (52%), Gaps = 53/282 (18%)

Query: 12  EVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGL 71
           +VV A+D+NT AN VYK+NFP T L  + I+  ++EE + +S ++ILMSPPCQPFTR GL
Sbjct: 28  QVVAAVDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFNMILMSPPCQPFTRIGL 87

Query: 72  QKDIADARCTALSYLIETIPAIPSL-QCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEF 130
           Q D+ D R  +  ++++ +P +  L + +LLENVKGFE S +RDL+   +   GF++QEF
Sbjct: 88  QGDVTDPRTNSFLHILDILPRLQKLPKYILLENVKGFEMSSTRDLLIQTIENCGFQYQEF 147

Query: 131 LLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELPKLKAN--------- 181
           LLSPT  G+PNSR RY+LIAK  P        F F+   +++ E PK ++          
Sbjct: 148 LLSPTSLGIPNSRLRYFLIAKLQPEP------FPFQAPGQVLMEFPKTESEHPPKYAINA 201

Query: 182 -------------------TCN---PLLSRMTLHGILDSTHPS-GDLYRR---------- 208
                               C+    +L ++   G +D  H    DL  R          
Sbjct: 202 EKKTEEKKTGPKICFDSSTQCSGKEAILFKLETAGEIDRKHQQDSDLSVRMLKDFLEDDI 261

Query: 209 ----YLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYTHYAEG 246
               + +  K LLR   + DIV   +  + CFTK Y  Y EG
Sbjct: 262 DKHSFFLPPKSLLRYALLLDIVKPTSRRSMCFTKGYGRYIEG 303
Specifically methylates cytosine 38 in the anticodon loop of tRNA(Asp).
Bos taurus (taxid: 9913)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 0EC: 4
>sp|Q4G073|TRDMT_RAT tRNA (cytosine(38)-C(5))-methyltransferase OS=Rattus norvegicus GN=Trdmt1 PE=2 SV=1 Back     alignment and function description
>sp|O14717|TRDMT_HUMAN tRNA (cytosine(38)-C(5))-methyltransferase OS=Homo sapiens GN=TRDMT1 PE=1 SV=1 Back     alignment and function description
>sp|O55055|TRDMT_MOUSE tRNA (cytosine(38)-C(5))-methyltransferase OS=Mus musculus GN=Trdmt1 PE=2 SV=2 Back     alignment and function description
>sp|Q54JH6|CMT1_DICDI DNA (cytosine-5)-methyltransferase OS=Dictyostelium discoideum GN=dnmA PE=1 SV=1 Back     alignment and function description
>sp|P40999|PMT1M_SCHPO tRNA (cytosine(38)-C(5))-methyltransferase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pmt1 PE=1 SV=1 Back     alignment and function description
>sp|P45000|MTH5_HAEIN Modification methylase HindV OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=hindVM PE=3 SV=1 Back     alignment and function description
>sp|P24581|MTNX_NEILA Cytosine-specific methyltransferase NlaX OS=Neisseria lactamica GN=nlaXM PE=3 SV=1 Back     alignment and function description
>sp|P19888|MTBA_BACAR Modification methylase BanI OS=Bacillus aneurinolyticus GN=banIM PE=1 SV=1 Back     alignment and function description
>sp|O30868|MTH2_HAEAE Modification methylase HaeII OS=Haemophilus aegyptius GN=haeIIM PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query250
321476287341 hypothetical protein DAPPUDRAFT_187425 [ 0.908 0.665 0.438 1e-52
345487046347 PREDICTED: tRNA (cytosine(38)-C(5))-meth 0.936 0.674 0.441 6e-51
322796386 354 hypothetical protein SINV_80475 [Solenop 0.924 0.652 0.442 1e-49
328782909 360 PREDICTED: tRNA (cytosine-5-)-methyltran 0.904 0.627 0.441 4e-49
195387886332 GJ17650 [Drosophila virilis] gi|19414908 0.88 0.662 0.438 9e-49
194861352331 GG23765 [Drosophila erecta] gi|190661632 0.872 0.658 0.442 2e-48
380021060 359 PREDICTED: tRNA (cytosine(38)-C(5))-meth 0.904 0.629 0.441 3e-48
307169339 362 tRNA (cytosine-5-)-methyltransferase [Ca 0.896 0.618 0.430 7e-48
332029105309 tRNA (cytosine-5-)-methyltransferase [Ac 0.856 0.692 0.427 8e-48
383865745 359 PREDICTED: tRNA (cytosine-5-)-methyltran 0.892 0.621 0.428 9e-48
>gi|321476287|gb|EFX87248.1| hypothetical protein DAPPUDRAFT_187425 [Daphnia pulex] Back     alignment and taxonomy information
 Score =  212 bits (540), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 103/235 (43%), Positives = 150/235 (63%), Gaps = 8/235 (3%)

Query: 12  EVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGL 71
           EVV ++DINTSAN+VY+HNF +TN + RNI+S S +EIN + PD+I+MSPPCQPFTR GL
Sbjct: 30  EVVFSVDINTSANAVYRHNFKQTNQQARNIESLSAKEINKLRPDIIMMSPPCQPFTRVGL 89

Query: 72  QKDIADARCTALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFL 131
           + D+ D+RC++  +L++ +P + ++  +L+ENV GFE S  R+  T  L    F F+EF+
Sbjct: 90  KLDVEDSRCSSFLHLLDILPHLETVSFILMENVVGFETSEMRNAFTKALKNCDFHFREFI 149

Query: 132 LSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELPKLKANTCNPLLSRMT 191
           LSP    +PNSR+RYYL+AK+          F F + +++MT  P  +       +   T
Sbjct: 150 LSPESIKIPNSRSRYYLVAKKC-------TDFSFGSENDIMTSFPNSRLCDIEMPVQEKT 202

Query: 192 LHGILDSTHPSGDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYTHYAEG 246
           L   L       +L  RYL++DK L + + + D+     +S+ CFTKAYTHYAEG
Sbjct: 203 LDPYLVKDMSDEEL-ARYLLTDKTLFKYWRILDVRQTSDTSSCCFTKAYTHYAEG 256

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|345487046|ref|XP_001602026.2| PREDICTED: tRNA (cytosine(38)-C(5))-methyltransferase-like, partial [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|322796386|gb|EFZ18927.1| hypothetical protein SINV_80475 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|328782909|ref|XP_393991.3| PREDICTED: tRNA (cytosine-5-)-methyltransferase [Apis mellifera] Back     alignment and taxonomy information
>gi|195387886|ref|XP_002052623.1| GJ17650 [Drosophila virilis] gi|194149080|gb|EDW64778.1| GJ17650 [Drosophila virilis] Back     alignment and taxonomy information
>gi|194861352|ref|XP_001969765.1| GG23765 [Drosophila erecta] gi|190661632|gb|EDV58824.1| GG23765 [Drosophila erecta] Back     alignment and taxonomy information
>gi|380021060|ref|XP_003694392.1| PREDICTED: tRNA (cytosine(38)-C(5))-methyltransferase-like [Apis florea] Back     alignment and taxonomy information
>gi|307169339|gb|EFN62060.1| tRNA (cytosine-5-)-methyltransferase [Camponotus floridanus] Back     alignment and taxonomy information
>gi|332029105|gb|EGI69118.1| tRNA (cytosine-5-)-methyltransferase [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|383865745|ref|XP_003708333.1| PREDICTED: tRNA (cytosine-5-)-methyltransferase-like [Megachile rotundata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query250
ZFIN|ZDB-GENE-041008-138 381 trdmt1 "tRNA aspartic acid met 0.636 0.417 0.475 4.2e-47
UNIPROTKB|E2RM86 391 TRDMT1 "Uncharacterized protei 0.704 0.450 0.475 2.3e-46
UNIPROTKB|F1NJ02 398 TRDMT1 "Uncharacterized protei 0.772 0.484 0.436 3.7e-46
UNIPROTKB|O14717 391 TRDMT1 "tRNA (cytosine(38)-C(5 0.652 0.416 0.476 8.6e-45
FB|FBgn0028707345 Mt2 "Methyltransferase 2" [Dro 0.776 0.562 0.406 2.3e-44
UNIPROTKB|Q7YS61 391 TRDMT1 "tRNA (cytosine-5-)-met 0.692 0.442 0.45 2.3e-39
MGI|MGI:1274787 415 Trdmt1 "tRNA aspartic acid met 0.64 0.385 0.497 2.9e-39
RGD|1306292 391 Trdmt1 "tRNA aspartic acid met 0.66 0.421 0.477 1.3e-38
TAIR|locus:2179469 383 DNMT2 "DNA methyltransferase-2 0.6 0.391 0.467 3.4e-34
DICTYBASE|DDB_G0288047 379 dnmA "DNA (cytosine-5-)-methyl 0.596 0.393 0.422 2.4e-33
ZFIN|ZDB-GENE-041008-138 trdmt1 "tRNA aspartic acid methyltransferase 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 417 (151.9 bits), Expect = 4.2e-47, Sum P(2) = 4.2e-47
 Identities = 79/166 (47%), Positives = 113/166 (68%)

Query:    12 EVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGL 71
             EVV A+D+NT+AN +YKHNFP T L  + I+  ++++ + ++ D+ILMSPPCQPFTR GL
Sbjct:    31 EVVAAVDVNTTANLIYKHNFPTTQLLPKTIEGMTLQDFDRLNFDMILMSPPCQPFTRIGL 90

Query:    72 QKDIADARCTALSYLIETIPAIPSL-QCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEF 130
             Q D+AD R  +  Y+++ +P +    + +LLENVKGFE S +RD +   L    + FQEF
Sbjct:    91 QGDVADPRTKSFLYILDLLPRLSKRPRFILLENVKGFESSAARDALLQTLRECDYSFQEF 150

Query:   131 LLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELP 176
             L+SPT  G+PNSR RY+LIAKR+P       +F F  S+E++   P
Sbjct:   151 LISPTSLGIPNSRLRYFLIAKRAPE------TFSFPVSTEIIEGFP 190
GO:0006306 "DNA methylation" evidence=IEA
GO:0003677 "DNA binding" evidence=IEA
GO:0008168 "methyltransferase activity" evidence=IEA
GO:0005575 "cellular_component" evidence=ND
GO:0016740 "transferase activity" evidence=IEA
GO:0032259 "methylation" evidence=IEA
UNIPROTKB|E2RM86 TRDMT1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1NJ02 TRDMT1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|O14717 TRDMT1 "tRNA (cytosine(38)-C(5))-methyltransferase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0028707 Mt2 "Methyltransferase 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|Q7YS61 TRDMT1 "tRNA (cytosine-5-)-methyltransferase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1274787 Trdmt1 "tRNA aspartic acid methyltransferase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1306292 Trdmt1 "tRNA aspartic acid methyltransferase 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
TAIR|locus:2179469 DNMT2 "DNA methyltransferase-2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0288047 dnmA "DNA (cytosine-5-)-methyltransferase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q54JH6CMT1_DICDI2, ., 1, ., 1, ., 3, 70.32460.960.6332yesN/A
P40999PMT1M_SCHPONo assigned EC number0.32060.8640.6545yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.1.37LOW CONFIDENCE prediction!
3rd Layer2.1.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query250
cd00315275 cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specifi 8e-36
COG0270328 COG0270, Dcm, Site-specific DNA methylase [DNA rep 2e-27
pfam00145320 pfam00145, DNA_methylase, C-5 cytosine-specific DN 1e-15
TIGR00675315 TIGR00675, dcm, DNA-methyltransferase (dcm) 1e-13
>gnl|CDD|238192 cd00315, Cyt_C5_DNA_methylase, Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology Back     alignment and domain information 
 Score =  128 bits (323), Expect = 8e-36
 Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 11/155 (7%)

Query: 7   HAFSL---EVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPC 63
                   E+V A +I+ SA   Y+ NFP   + G +I     ++      D++    PC
Sbjct: 15  LGLEKAGFEIVAANEIDKSAAETYEANFPNKLIEG-DITKIDEKDFIP-DIDLLTGGFPC 72

Query: 64  QPFTRTGLQKDIADARCTALSYLIETIPAI-PSLQCLLLENVKGFEG---SRSRDLITSM 119
           QPF+  G +K   D R T    +I  +    P  +  LLENVKG        +  +I + 
Sbjct: 73  QPFSIAGKRKGFEDTRGTLFFEIIRILKEKKP--KYFLLENVKGLLTHDNGNTLKVILNT 130

Query: 120 LTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSP 154
           L   G+     LL+ + +GVP +R R ++I  R  
Sbjct: 131 LEELGYNVYWKLLNASDYGVPQNRERVFIIGIRKD 165

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. Length = 275
>gnl|CDD|223348 COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|215747 pfam00145, DNA_methylase, C-5 cytosine-specific DNA methylase Back     alignment and domain information
>gnl|CDD|233085 TIGR00675, dcm, DNA-methyltransferase (dcm) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 250
KOG0919|consensus338 100.0
PRK10458467 DNA cytosine methylase; Provisional 100.0
cd00315275 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth 100.0
PF00145335 DNA_methylase: C-5 cytosine-specific DNA methylase 100.0
TIGR00675315 dcm DNA-methyltransferase (dcm). All proteins in t 100.0
COG0270328 Dcm Site-specific DNA methylase [DNA replication, 100.0
TIGR03704251 PrmC_rel_meth putative protein-(glutamine-N5) meth 95.37
COG2263198 Predicted RNA methylase [Translation, ribosomal st 93.88
PF13659117 Methyltransf_26: Methyltransferase domain; PDB: 3G 93.04
TIGR00537179 hemK_rel_arch HemK-related putative methylase. The 92.26
KOG3191|consensus209 92.12
TIGR00479431 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. 91.57
PRK11783702 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi 91.11
PRK01581374 speE spermidine synthase; Validated 90.8
PF09445163 Methyltransf_15: RNA cap guanine-N2 methyltransfer 90.7
PHA03412241 putative methyltransferase; Provisional 90.28
PRK03612521 spermidine synthase; Provisional 89.66
TIGR02085374 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer 89.34
COG1092393 Predicted SAM-dependent methyltransferases [Genera 88.0
PRK09328275 N5-glutamine S-adenosyl-L-methionine-dependent met 86.45
COG2520341 Predicted methyltransferase [General function pred 85.54
PF01170179 UPF0020: Putative RNA methylase family UPF0020; In 85.51
PRK14968188 putative methyltransferase; Provisional 84.93
COG3963194 Phospholipid N-methyltransferase [Lipid metabolism 84.85
TIGR03534251 RF_mod_PrmC protein-(glutamine-N5) methyltransfera 84.72
PHA03411279 putative methyltransferase; Provisional 84.67
COG4747142 ACT domain-containing protein [General function pr 83.61
KOG3420|consensus185 83.55
PRK00121202 trmB tRNA (guanine-N(7)-)-methyltransferase; Revie 83.33
PF03602183 Cons_hypoth95: Conserved hypothetical protein 95; 80.79
PRK14904445 16S rRNA methyltransferase B; Provisional 80.23
>KOG0919|consensus Back     alignment and domain information 
Probab=100.00  E-value=4.9e-56  Score=374.83  Aligned_cols=233  Identities=42%  Similarity=0.723  Sum_probs=204.2

Q ss_pred             HHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhhH
Q psy3543           3 RLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCTA   82 (250)
Q Consensus         3 gL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~l   82 (250)
                      +|+++.++.++|+|+|+++.|+++|++|....-+-..||+.++.+++.+.++|+|++|||||||++.|.+++..|+|+..
T Consensus        19 al~~a~ipaqiVaAiDvNtvANevY~~N~h~~L~k~~~I~~lt~kefd~l~~~m~lMSPpCQPfTRiG~q~D~~D~Rs~a   98 (338)
T KOG0919|consen   19 ALEDAQIPAQIVAAIDVNTVANEVYAHNYHSNLVKTRNIQSLTVKEFDKLQANMLLMSPPCQPFTRIGLQRDTEDKRSDA   98 (338)
T ss_pred             hHhhhcCchhhEEEEecchhHHHHHhcCcccchhhccccceeeHhhhhhcccceEeeCCCCCchhhhcccccccCchhHH
Confidence            68999999999999999999999999994333345789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHccccCC-CcEEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeCCCCCCCCC
Q psy3543          83 LSYLIETIPAIPS-LQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEA  161 (250)
Q Consensus        83 ~~~~~~ii~~~~~-P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~~~~~~~~~  161 (250)
                      |.+++.++.+++. |+||+||||+||..+.+.+.+++.|+.+||++.+++|++.+||+|++|-|+|+||...-       
T Consensus        99 flhil~~lP~~q~LPeYIL~ENVkGFE~S~ar~~~i~~lencGf~~~EfiLsPtqfniPNsR~Ryy~iArl~~-------  171 (338)
T KOG0919|consen   99 FLHILGLLPECQELPEYILMENVKGFESSQARNQFIESLENCGFHWREFILSPTQFNIPNSRYRYYCIARLGA-------  171 (338)
T ss_pred             HHHHHhhhhhhhhhhHHHHHhhcccchhhhHHHHHHHHHHhcCchhhheeccccccCCCCcchheeehhhhCC-------
Confidence            9999999999887 99999999999999999999999999999999999999999999999999999998763       


Q ss_pred             CcccCchhhhhhcCCccc--cCcCCCCCcccchhhhccCCCCCCCcccccccCHHHHHhccccceeecCCCCcceeeccC
Q psy3543         162 SFCFETSSELMTELPKLK--ANTCNPLLSRMTLHGILDSTHPSGDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFTKA  239 (250)
Q Consensus       162 ~f~~~~~~~~~~~~p~~~--~~~~~~~~~~~~l~d~Le~~~~~~~~~~~y~~~~~~~~~~~~~~div~p~~~~~~cftk~  239 (250)
                      +|+|+... .+.+.|.-.  +. ....++  .|+||||.+.|    |+.|+++++++.+++..||||.|+++||+|||||
T Consensus       172 ~F~~~G~~-s~d~~~qFseiaq-k~g~Vk--~i~d~lE~~~d----~s~ylvp~~vL~k~~l~~DIv~P~~srs~CFTkG  243 (338)
T KOG0919|consen  172 DFPFAGGK-SWDEMPQFSEIAQ-KQGLVK--QIADILEENVD----PSDYLVPDDVLTKRVLVMDIVHPAQSRSMCFTKG  243 (338)
T ss_pred             CCCCCCCc-ccccccchHHHHH-hcchHH--HHHHHHHhcCC----HHHccCCHHHHHHhHhheeecccccccceEeecC
Confidence            34443221 222233211  10 001234  69999999998    8999999999999999999999999999999999


Q ss_pred             CcceeeccccC
Q psy3543         240 YTHYAEGKIDY  250 (250)
Q Consensus       240 y~~~~~g~gs~  250 (250)
                      |+||++||||+
T Consensus       244 Ythy~eGtGSi  254 (338)
T KOG0919|consen  244 YTHYTEGTGSI  254 (338)
T ss_pred             ccceeecchHH
Confidence            99999999995

>PRK10458 DNA cytosine methylase; Provisional Back     alignment and domain information
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology Back     alignment and domain information
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 Back     alignment and domain information
>TIGR00675 dcm DNA-methyltransferase (dcm) Back     alignment and domain information
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific Back     alignment and domain information
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A Back     alignment and domain information
>TIGR00537 hemK_rel_arch HemK-related putative methylase Back     alignment and domain information
>KOG3191|consensus Back     alignment and domain information
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA Back     alignment and domain information
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional Back     alignment and domain information
>PRK01581 speE spermidine synthase; Validated Back     alignment and domain information
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] Back     alignment and domain information
>PHA03412 putative methyltransferase; Provisional Back     alignment and domain information
>PRK03612 spermidine synthase; Provisional Back     alignment and domain information
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB Back     alignment and domain information
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] Back     alignment and domain information
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional Back     alignment and domain information
>COG2520 Predicted methyltransferase [General function prediction only] Back     alignment and domain information
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase Back     alignment and domain information
>PRK14968 putative methyltransferase; Provisional Back     alignment and domain information
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism] Back     alignment and domain information
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific Back     alignment and domain information
>PHA03411 putative methyltransferase; Provisional Back     alignment and domain information
>COG4747 ACT domain-containing protein [General function prediction only] Back     alignment and domain information
>KOG3420|consensus Back     alignment and domain information
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed Back     alignment and domain information
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH Back     alignment and domain information
>PRK14904 16S rRNA methyltransferase B; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query250
1g55_A343 Structure Of Human Dnmt2, An Enigmatic Dna Methyltr 3e-50
4h0n_A333 Crystal Structure Of Spodoptera Frugiperda Dnmt2 E2 1e-47
3qv2_A327 Structure Analysis Of Entamoeba Histolytica Methylt 1e-22
1svu_A327 Structure Of The Q237w Mutant Of Hhai Dna Methyltra 7e-08
1fjx_A327 Structure Of Ternary Complex Of Hhai Methyltransfer 8e-08
1mht_A327 Covalent Ternary Structure Of Hhai Methyltransferas 8e-08
2uyh_A327 Hhai Dna Methyltransferase S87q-Q237s Mutant Comple 1e-07
2zcj_A327 Ternary Structure Of The Glu119gln M.Hhai, C5-Cytos 2e-07
2uz4_A327 Hhai Dna Methyltransferase R165n Mutant Complex Wit 4e-07
2uyc_A327 Hhai Dna Methyltransferase R163n Mutant Complex Wit 4e-07
2z6u_A327 Ternary Structure Of The Glu119ala M.Hhai, C5-Cytos 4e-07
2z6q_A327 Ternary Structure Of Arg165ala M.Hhai C5-Cytosine D 5e-07
2i9k_A327 Engineered Extrahelical Base Destabilization Enhanc 6e-07
2z6a_A327 S-Adenosyl-L-Methionine-Dependent Methyl Transfer: 1e-06
1dct_A324 Dna (Cytosine-5) Methylase From Haeiii Covalently B 2e-05
3g7u_A 376 Crystal Structure Of Putative Dna Modification Meth 3e-05
3ubt_Y331 Crystal Structure Of C71s Mutant Of Dna Cytosine-5 4e-04
>pdb|1G55|A Chain A, Structure Of Human Dnmt2, An Enigmatic Dna Methyltransferase Homologue Length = 343 Back     alignment and structure 
Iteration: 1

 Score =  194 bits (494), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 100/236 (42%), Positives = 144/236 (61%), Gaps = 8/236 (3%)
Query: 12  EVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGL 71
           +VV AID+NT AN VYK+NFP T L  + I+  ++EE + +S D+ILMSPPCQPFTR G 
Sbjct: 27  QVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFTRIGR 86
Query: 72  QKDIADARCTALSYLIETIPAIPSL-QCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEF 130
           Q D+ D+R  +  ++++ +P +  L + +LLENVKGFE S +RDL+   +   GF++QEF
Sbjct: 87  QGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIENXGFQYQEF 146
Query: 131 LLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELPKLKANTCNPLLSRM 190
           LLSPT  G+PNSR RY+LIAK             F+   +++ E PK++ +  N   S +
Sbjct: 147 LLSPTSLGIPNSRLRYFLIAKL------QSEPLPFQAPGQVLMEFPKIEIHRKNQQDSDL 200
Query: 191 TLHGILDSTHPSGDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYTHYAEG 246
           ++  + D      D+  +YL+  K LLR   + DIV      + CFTK Y  Y EG
Sbjct: 201 SVKMLKDFLEDDTDV-NQYLLPPKSLLRYALLLDIVQPTXRRSVCFTKGYGSYIEG 255
>pdb|4H0N|A Chain A, Crystal Structure Of Spodoptera Frugiperda Dnmt2 E260a/e261a/k263a Mutant Length = 333 Back     alignment and structure
>pdb|3QV2|A Chain A, Structure Analysis Of Entamoeba Histolytica Methyltransferase Ehmeth Length = 327 Back     alignment and structure
>pdb|1SVU|A Chain A, Structure Of The Q237w Mutant Of Hhai Dna Methyltransferase: An Insight Into Protein-Protein Interactions Length = 327 Back     alignment and structure
>pdb|1FJX|A Chain A, Structure Of Ternary Complex Of Hhai Methyltransferase Mutant (T250g) In Complex With Dna And Adohcy Length = 327 Back     alignment and structure
>pdb|1MHT|A Chain A, Covalent Ternary Structure Of Hhai Methyltransferase, Dna And S-Adenosyl-L-Homocysteine Length = 327 Back     alignment and structure
>pdb|2UYH|A Chain A, Hhai Dna Methyltransferase S87q-Q237s Mutant Complex With 13mer Gcgc-Gmgc Oligonucleotide And Sah Length = 327 Back     alignment and structure
>pdb|2ZCJ|A Chain A, Ternary Structure Of The Glu119gln M.Hhai, C5-Cytosine Dna Methyltransferase, With Unmodified Dna And Adohcy Length = 327 Back     alignment and structure
>pdb|2UZ4|A Chain A, Hhai Dna Methyltransferase R165n Mutant Complex With 13mer Gcgc-Gmgc Oligonucleotide And Sah Length = 327 Back     alignment and structure
>pdb|2UYC|A Chain A, Hhai Dna Methyltransferase R163n Mutant Complex With 13mer Gcgc-Gmgc Oligonucleotide And Sah Length = 327 Back     alignment and structure
>pdb|2Z6U|A Chain A, Ternary Structure Of The Glu119ala M.Hhai, C5-Cytosine Dna Methyltransferase, With Unmodified Dna And Adohcy Length = 327 Back     alignment and structure
>pdb|2Z6Q|A Chain A, Ternary Structure Of Arg165ala M.Hhai C5-Cytosine Dna Methyltransferase With Unmodified Dna And Adohcy Length = 327 Back     alignment and structure
>pdb|2I9K|A Chain A, Engineered Extrahelical Base Destabilization Enhances Sequence Discrimination Of Dna Methyltransferase M.Hhai Length = 327 Back     alignment and structure
>pdb|2Z6A|A Chain A, S-Adenosyl-L-Methionine-Dependent Methyl Transfer: Observable Precatalytic Intermediates During Dna Cytosine Methylation Length = 327 Back     alignment and structure
>pdb|1DCT|A Chain A, Dna (Cytosine-5) Methylase From Haeiii Covalently Bound To Dna Length = 324 Back     alignment and structure
>pdb|3G7U|A Chain A, Crystal Structure Of Putative Dna Modification Methyltransferase Encoded Within Prophage Cp-933r (E.Coli) Length = 376 Back     alignment and structure
>pdb|3UBT|Y Chain Y, Crystal Structure Of C71s Mutant Of Dna Cytosine-5 Methyltransferase M.Haeiii Bound To Dna Length = 331 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query250
1g55_A343 DNA cytosine methyltransferase DNMT2; human DNA me 1e-61
3qv2_A327 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H 4e-50
1dct_A324 Protein (modification methylase HAEIII); enzyme, c 6e-23
3g7u_A 376 Cytosine-specific methyltransferase; DNA-binding, 1e-21
2c7p_A327 Modification methylase HHAI; DNA methyltransferase 2e-21
3av4_A 1330 DNA (cytosine-5)-methyltransferase 1; CXXC-type zi 3e-17
3swr_A 1002 DNA (cytosine-5)-methyltransferase 1; epigenetics, 4e-17
3me5_A482 Cytosine-specific methyltransferase; structural ge 4e-13
2qrv_A295 DNA (cytosine-5)-methyltransferase 3A; DNA methylt 4e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-04
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 Length = 343 Back     alignment and structure
 Score =  196 bits (499), Expect = 1e-61
 Identities = 101/245 (41%), Positives = 145/245 (59%), Gaps = 8/245 (3%)

Query: 4   LSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPC 63
           L       +VV AID+NT AN VYK+NFP T L  + I+  ++EE + +S D+ILMSPPC
Sbjct: 19  LRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPC 78

Query: 64  QPFTRTGLQKDIADARCTALSYLIETIPAIPSL-QCLLLENVKGFEGSRSRDLITSMLTR 122
           QPFTR G Q D+ D+R  +  ++++ +P +  L + +LLENVKGFE S +RDL+   +  
Sbjct: 79  QPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIEN 138

Query: 123 AGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELPKLKANT 182
            GF++QEFLLSPT  G+PNSR RY+LIAK             F+   +++ E PK++ + 
Sbjct: 139 CGFQYQEFLLSPTSLGIPNSRLRYFLIAKL------QSEPLPFQAPGQVLMEFPKIEIHR 192

Query: 183 CNPLLSRMTLHGILDSTHPSGDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYTH 242
            N   S +++  + D      D+  +YL+  K LLR   + DIV      + CFTK Y  
Sbjct: 193 KNQQDSDLSVKMLKDFLEDDTDVN-QYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGS 251

Query: 243 YAEGK 247
           Y EG 
Sbjct: 252 YIEGT 256
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} Length = 327 Back     alignment and structure
>1dct_A Protein (modification methylase HAEIII); enzyme, cytosine methylase, transferase/DNA complex; HET: DNA C49 5CM; 2.80A {Haemophilus influenzae biotypeaegyptius} SCOP: c.66.1.26 Length = 324 Back     alignment and structure
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} Length = 376 Back     alignment and structure
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... Length = 327 Back     alignment and structure
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* Length = 1330 Back     alignment and structure
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* Length = 1002 Back     alignment and structure
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A Length = 482 Back     alignment and structure
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} Length = 295 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query250
4h0n_A333 DNMT2; SAH binding, transferase; HET: SAH; 2.71A { 100.0
3qv2_A327 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H 100.0
1g55_A343 DNA cytosine methyltransferase DNMT2; human DNA me 100.0
3ubt_Y331 Modification methylase HAEIII; protein-DNA complex 100.0
3me5_A 482 Cytosine-specific methyltransferase; structural ge 100.0
2c7p_A327 Modification methylase HHAI; DNA methyltransferase 100.0
4dkj_A403 Cytosine-specific methyltransferase; CG-specificit 100.0
3g7u_A 376 Cytosine-specific methyltransferase; DNA-binding, 100.0
4ft4_B 784 DNA (cytosine-5)-methyltransferase 1; chromodomain 100.0
3swr_A 1002 DNA (cytosine-5)-methyltransferase 1; epigenetics, 100.0
3av4_A 1330 DNA (cytosine-5)-methyltransferase 1; CXXC-type zi 100.0
2qrv_A295 DNA (cytosine-5)-methyltransferase 3A; DNA methylt 100.0
2pv0_B386 DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, 99.93
2qrv_B230 DNA (cytosine-5)-methyltransferase 3-like; DNA met 99.92
2igt_A332 SAM dependent methyltransferase; alpha-beta sandwi 97.68
3cgg_A195 SAM-dependent methyltransferase; NP_600671.1, meth 96.69
2frn_A278 Hypothetical protein PH0793; structural genomics, 95.95
3q87_B170 N6 adenine specific DNA methylase; SAM-methyltrans 95.6
3c0k_A396 UPF0064 protein YCCW; PUA domain, adoMet dependent 95.57
1wy7_A207 Hypothetical protein PH1948; seven-stranded beta s 95.16
3lpm_A259 Putative methyltransferase; structural genomics, p 94.79
2yxd_A183 Probable cobalt-precorrin-6Y C(15)-methyltransfer 94.08
3e8s_A227 Putative SAM dependent methyltransferase; NP_74470 93.64
3lcc_A235 Putative methyl chloride transferase; halide methy 92.91
2ozv_A260 Hypothetical protein ATU0636; structural genomics, 92.62
3h2b_A203 SAM-dependent methyltransferase; alpha-beta protei 92.5
1ne2_A200 Hypothetical protein TA1320; structural genomics, 92.46
1ixk_A315 Methyltransferase; open beta sheet; 1.90A {Pyrococ 91.53
3evz_A230 Methyltransferase; NYSGXRC, NEW YORK SGX research 91.45
3k6r_A278 Putative transferase PH0793; structural genomics, 91.16
3hnr_A220 Probable methyltransferase BT9727_4108; structural 91.13
2b78_A385 Hypothetical protein SMU.776; structure genomics, 91.11
2yx1_A336 Hypothetical protein MJ0883; methyl transferase, t 90.34
1y8c_A246 S-adenosylmethionine-dependent methyltransferase; 90.32
2qm3_A373 Predicted methyltransferase; putative methyltransf 90.25
3dtn_A234 Putative methyltransferase MM_2633; structural gen 90.03
3a27_A272 TYW2, uncharacterized protein MJ1557; wybutosine m 89.68
3ajd_A274 Putative methyltransferase MJ0026; tRNA, M5C, ross 89.13
3m33_A226 Uncharacterized protein; structural genomics, PSI- 89.13
3gdh_A241 Trimethylguanosine synthase homolog; M7G, CAP, dim 88.92
4dmg_A393 Putative uncharacterized protein TTHA1493; rRNA, m 88.59
1iy9_A275 Spermidine synthase; rossmann fold, structural gen 88.39
3dh0_A219 SAM dependent methyltransferase; cystal structure, 88.21
2ipx_A233 RRNA 2'-O-methyltransferase fibrillarin; FBL, stru 88.08
3bwc_A304 Spermidine synthase; SAM, SGPP, structura genomics 87.93
1inl_A296 Spermidine synthase; beta-barrel, rossman fold, st 87.66
3m4x_A456 NOL1/NOP2/SUN family protein; mtase domain, PUA do 87.65
1wxx_A382 TT1595, hypothetical protein TTHA1280; thermus the 87.61
1yzh_A214 TRNA (guanine-N(7)-)-methyltransferase; alpha-beta 87.33
2b3t_A276 Protein methyltransferase HEMK; translation termin 87.28
3tm4_A373 TRNA (guanine N2-)-methyltransferase TRM14; rossma 86.86
3g5l_A253 Putative S-adenosylmethionine dependent methyltran 86.86
1xtp_A254 LMAJ004091AAA; SGPP, structural genomics, PSI, pro 86.77
2pt6_A321 Spermidine synthase; transferase, structural genom 86.66
2i62_A265 Nicotinamide N-methyltransferase; structural genom 86.59
3e05_A204 Precorrin-6Y C5,15-methyltransferase (decarboxyla; 86.44
2ih2_A 421 Modification methylase TAQI; DNA, DNA methyltransf 86.33
2frx_A479 Hypothetical protein YEBU; rossmann-type S-adenosy 86.03
1nv8_A284 HEMK protein; class I adoMet-dependent methyltrans 85.69
2f8l_A344 Hypothetical protein LMO1582; structural genomics, 85.16
3v97_A703 Ribosomal RNA large subunit methyltransferase L; Y 85.1
3m6w_A464 RRNA methylase; rRNA methyltransferase, 5-methylcy 84.96
3dlc_A219 Putative S-adenosyl-L-methionine-dependent methylt 84.93
2b9e_A309 NOL1/NOP2/SUN domain family, member 5 isoform 2; m 84.32
3eey_A197 Putative rRNA methylase; rRNA methylation, S-adeno 84.3
3e23_A211 Uncharacterized protein RPA2492; alpha-beta protei 84.02
1o54_A277 SAM-dependent O-methyltransferase; TM0748, structu 83.79
2ex4_A241 Adrenal gland protein AD-003; methyltransferase, s 83.6
2as0_A396 Hypothetical protein PH1915; RNA methyltransferase 83.55
3p9n_A189 Possible methyltransferase (methylase); RV2966C, a 83.39
2yxl_A450 PH0851 protein, 450AA long hypothetical FMU protei 83.33
3id6_C232 Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; 82.72
3tma_A354 Methyltransferase; thump domain; 2.05A {Thermus th 82.48
2i7c_A283 Spermidine synthase; transferase, structural genom 81.76
1uwv_A433 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m 81.53
2fpo_A202 Methylase YHHF; structural genomics, putative meth 80.77
3bxo_A239 N,N-dimethyltransferase; desosamine, sugar, carboh 80.64
3d2l_A243 SAM-dependent methyltransferase; ZP_00538691.1, st 80.6
2ift_A201 Putative methylase HI0767; NESG, Y767_haein, struc 80.42
1l3i_A192 Precorrin-6Y methyltransferase/putative decarboxyl 80.04
>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} Back     alignment and structure
Probab=100.00  E-value=3.3e-57  Score=409.11  Aligned_cols=229  Identities=45%  Similarity=0.720  Sum_probs=209.5

Q ss_pred             hHHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhh
Q psy3543           2 ERLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCT   81 (250)
Q Consensus         2 egL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~   81 (250)
                      .||+++|+++++|+|+|+|+.|++||++|||+..++++||+++++++++..++|+|+||||||+||.+|++++.+|+|+.
T Consensus        18 ~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPCQ~fS~ag~~~~~~d~r~~   97 (333)
T 4h0n_A           18 CAWKESGLDGEIVAAVDINTVANSVYKHNFPETNLLNRNIQQLTPQVIKKWNVDTILMSPPCQPFTRNGKYLDDNDPRTN   97 (333)
T ss_dssp             HHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECCCGGGCCHHHHHHTTCCEEEECCCCCCSEETTEECCTTCTTSC
T ss_pred             HHHHHcCCCceEEEEEeCCHHHHHHHHHhCCCCceeccccccCCHHHhccCCCCEEEecCCCcchhhhhhccCCcCcccc
Confidence            58999998889999999999999999999999888899999999998886679999999999999999999999999999


Q ss_pred             HHHHHHHHccccCCCcEEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeCCCCCCCCC
Q psy3543          82 ALSYLIETIPAIPSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEA  161 (250)
Q Consensus        82 l~~~~~~ii~~~~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~~~~~~~~~  161 (250)
                      ||++++++|+++++|++|+||||+|+++++.++.+++.|+++||.+.+.+|||.+||+||+|+|+|+||++++.      
T Consensus        98 L~~~~~r~i~~~~~P~~~vlENV~gl~~~~~~~~i~~~l~~~GY~v~~~vl~a~~~GvPQ~R~R~fiva~r~~~------  171 (333)
T 4h0n_A           98 SFLYLIGILDQLDNVDYILMENVKGFENSTVRNLFIDKLKECNFIYQEFLLCPSTVGVPNSRLRYYCTARRNNL------  171 (333)
T ss_dssp             CHHHHHHHGGGCTTCCEEEEEECTTGGGSHHHHHHHHHHHHTTEEEEEEEECTTTTTCSCCCCEEEEEEEETTS------
T ss_pred             cHHHHHHHHHHhcCCCEEEEecchhhhhhhHHHHHHHHHHhCCCeEEEEEecHHHcCCCccceEEEEEEEeCCC------
Confidence            99999999999844999999999999999999999999999999999999999999999999999999999998      


Q ss_pred             CcccCchhhhhhcCCccccCcCCCCCcccchhhhccCCCCCCCcccccccCHHHHHhccccceeecCCCCcceeeccCCc
Q psy3543         162 SFCFETSSELMTELPKLKANTCNPLLSRMTLHGILDSTHPSGDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYT  241 (250)
Q Consensus       162 ~f~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~d~Le~~~~~~~~~~~y~~~~~~~~~~~~~~div~p~~~~~~cftk~y~  241 (250)
                      .|.|+....++..+|++...     ..  +|+|+||++.+     ++|+++++.+ ++...+|+++|.+.+++||||||+
T Consensus       172 ~~~f~~~~~~~~~~P~~~~~-----~~--~l~d~Le~~~~-----~~y~~~~~~~-~~~~~~d~~~~~~~~~~~~~k~~~  238 (333)
T 4h0n_A          172 TWPFKRRDEIITRLPKDFGV-----PH--SLESIIEEDVD-----EKFLVPEKML-RCAKVFDICYKTSKRSCCFTKAYT  238 (333)
T ss_dssp             CCCSCCCSSCBSSCSSCCCS-----CC--CSSTTCCSSCC-----GGGBCCHHHH-TTGGGCCEECTTCSCCCCCCTTBT
T ss_pred             CCCCCcccchhhhCCCCccc-----cc--cHHHHhccCCc-----ccccCCHHHH-HHHHHhccCChhhhhhhhhccccc
Confidence            67776555555567765432     23  89999998754     8999999999 888999999999999999999999


Q ss_pred             ceeecccc
Q psy3543         242 HYAEGKID  249 (250)
Q Consensus       242 ~~~~g~gs  249 (250)
                      +|++|+||
T Consensus       239 ~~~~g~gs  246 (333)
T 4h0n_A          239 HYADGTGS  246 (333)
T ss_dssp             TBSSSSCC
T ss_pred             eEEeccCc
Confidence            99999997
>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} Back     alignment and structure
>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 Back     alignment and structure
>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* Back     alignment and structure
>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A Back     alignment and structure
>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... Back     alignment and structure
>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} Back     alignment and structure
>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} Back     alignment and structure
>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* Back     alignment and structure
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* Back     alignment and structure
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* Back     alignment and structure
>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} Back     alignment and structure
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B* Back     alignment and structure
>2qrv_B DNA (cytosine-5)-methyltransferase 3-like; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} Back     alignment and structure
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 Back     alignment and structure
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* Back     alignment and structure
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} Back     alignment and structure
>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} Back     alignment and structure
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 Back     alignment and structure
>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Back     alignment and structure
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} Back     alignment and structure
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Back     alignment and structure
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Back     alignment and structure
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} Back     alignment and structure
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Back     alignment and structure
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 Back     alignment and structure
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Back     alignment and structure
>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* Back     alignment and structure
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* Back     alignment and structure
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* Back     alignment and structure
>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Back     alignment and structure
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} Back     alignment and structure
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} Back     alignment and structure
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A Back     alignment and structure
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Back     alignment and structure
>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* Back     alignment and structure
>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} Back     alignment and structure
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 Back     alignment and structure
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} Back     alignment and structure
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* Back     alignment and structure
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* Back     alignment and structure
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} Back     alignment and structure
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* Back     alignment and structure
>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 Back     alignment and structure
>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* Back     alignment and structure
>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* Back     alignment and structure
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Back     alignment and structure
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Back     alignment and structure
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* Back     alignment and structure
>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* Back     alignment and structure
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 Back     alignment and structure
>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* Back     alignment and structure
>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} Back     alignment and structure
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Back     alignment and structure
>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 Back     alignment and structure
>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* Back     alignment and structure
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* Back     alignment and structure
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Back     alignment and structure
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 Back     alignment and structure
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Back     alignment and structure
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Back     alignment and structure
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Back     alignment and structure
>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Back     alignment and structure
>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 Back     alignment and structure
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} Back     alignment and structure
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} Back     alignment and structure
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* Back     alignment and structure
>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Back     alignment and structure
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* Back     alignment and structure
>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* Back     alignment and structure
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 Back     alignment and structure
>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Back     alignment and structure
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Back     alignment and structure
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 Back     alignment and structure
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 250
d1g55a_343 c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 3e-21
d2c7pa1327 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilu 4e-09
d1dcta_324 c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus a 2e-08
>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} Length = 343 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 88.6 bits (218), Expect = 3e-21
 Identities = 101/245 (41%), Positives = 144/245 (58%), Gaps = 8/245 (3%)

Query: 4   LSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPC 63
           L       +VV AID+NT AN VYK+NFP T L  + I+  ++EE + +S D+ILMSPPC
Sbjct: 19  LRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPC 78

Query: 64  QPFTRTGLQKDIADARCTALSYLIETIPAIPSL-QCLLLENVKGFEGSRSRDLITSMLTR 122
           QPFTR G Q D+ D+R  +  ++++ +P +  L + +LLENVKGFE S +RDL+   +  
Sbjct: 79  QPFTRIGRQGDMTDSRTNSFLHILDILPRLQKLPKYILLENVKGFEVSSTRDLLIQTIEN 138

Query: 123 AGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSSEASFCFETSSELMTELPKLKANT 182
            GF++QEFLLSPT  G+PNSR RY+LIAK             F+   +++ E PK++ + 
Sbjct: 139 CGFQYQEFLLSPTSLGIPNSRLRYFLIAKL------QSEPLPFQAPGQVLMEFPKIEIHR 192

Query: 183 CNPLLSRMTLHGILDSTHPSGDLYRRYLVSDKDLLRRFHVFDIVNGKASSTNCFTKAYTH 242
            N   S +++  + D      D   +YL+  K LLR   + DIV      + CFTK Y  
Sbjct: 193 KNQQDSDLSVKMLKDFLEDDTD-VNQYLLPPKSLLRYALLLDIVQPTCRRSVCFTKGYGS 251

Query: 243 YAEGK 247
           Y EG 
Sbjct: 252 YIEGT 256
>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} Length = 327 Back     information, alignment and structure
>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} Length = 324 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query250
d1g55a_343 DNMT2 {Human (Homo sapiens) [TaxId: 9606]} 100.0
d2c7pa1327 DNA methylase HhaI {Haemophilus haemolyticus [TaxI 100.0
d1dcta_324 DNA methylase HaeIII {Haemophilus aegyptius [TaxId 100.0
d1ne2a_197 Hypothetical protein Ta1320 {Archaeon Thermoplasma 95.45
d1wxxa2318 Hypothetical protein TTHA1280, middle and C-termin 94.17
d2b78a2317 Hypothetical protein SMu776, middle and C-terminal 94.05
d2ex4a1222 Adrenal gland protein AD-003 (C9orf32) {Human (Hom 93.47
d1nv8a_271 N5-glutamine methyltransferase, HemK {Thermotoga m 93.38
d1wy7a1201 Hypothetical protein PH1948 {Archaeon Pyrococcus h 93.27
d2frna1260 Hypothetical protein PH0793 {Pyrococcus horikoshii 92.87
d2esra1152 Putative methyltransferase SPy1538 {Streptococcus 92.69
d1xtpa_254 Hypothetical protein Lmaj004091aaa (LmjF30.0810) { 91.98
d2as0a2324 Hypothetical protein PH1915, middle and C-terminal 91.79
d2igta1309 Putative methyltransferase Atu0340 {Agrobacterium 91.75
d2fpoa1183 Methylase YhhF {Escherichia coli [TaxId: 562]} 91.71
d2ifta1183 Putative methylase HI0767 {Haemophilus influenzae 88.25
d2b3ta1274 N5-glutamine methyltransferase, HemK {Escherichia 87.44
d2f06a270 Hypothetical protein BT0572 {Bacteroides thetaiota 86.49
d2fhpa1182 Putative methylase EF2452 {Enterococcus faecalis [ 85.6
d1g8sa_230 Fibrillarin homologue {Archaeon Methanococcus jann 85.41
d1iy9a_274 Spermidine synthase {Bacillus subtilis [TaxId: 142 83.94
d1uwva2358 rRNA (Uracil-5-)-methyltransferase RumA, catalytic 80.66
>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.3e-50  Score=357.47  Aligned_cols=235  Identities=42%  Similarity=0.733  Sum_probs=184.6

Q ss_pred             hHHhhcCCCcEEEEEEeCcHHHHHHHHHhCCCCCccccCccccccccccCCCCcEEEeCCCCchhhhcCCCCCCCCchhh
Q psy3543           2 ERLSNHAFSLEVVTAIDINTSANSVYKHNFPRTNLRGRNIQSFSIEEINAMSPDVILMSPPCQPFTRTGLQKDIADARCT   81 (250)
Q Consensus         2 egL~~~g~~~~~v~a~did~~a~~~y~~N~~~~~~~~~dI~~~~~~~~~~~~~Dll~~gpPCQ~fS~ag~~~~~~d~r~~   81 (250)
                      .||+++|+++++++|+|+|+.|++||++|||++.++.+||++++..+++..++|||+||||||+||.||++++.+|+|+.
T Consensus        17 ~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~~~~~~~~~di~~~~~~~~~~~~~Dll~ggpPCq~fS~ag~~~~~~d~r~~   96 (343)
T d1g55a_          17 HALRESCIPAQVVAAIDVNTVANEVYKYNFPHTQLLAKTIEGITLEEFDRLSFDMILMSPPCQPFTRIGRQGDMTDSRTN   96 (343)
T ss_dssp             HHHHHHTCSEEEEEEECCCHHHHHHHHHHCTTSCEECSCGGGCCHHHHHHHCCSEEEECCC------------------C
T ss_pred             HHHHHcCCCCeEEEEEECCHHHHHHHHHHCCCCCcccCchhhCCHhHcCCCCccEEEeeccccccccccccccccccccc
Confidence            48999998889999999999999999999999888899999999988876689999999999999999999999999999


Q ss_pred             HHHHHHHHcccc--CCCcEEEEccccCCCcchHHHHHHHHHHhCCCeEEEEEEccCCCCccccCceEEEEEEeCCCCCCC
Q psy3543          82 ALSYLIETIPAI--PSLQCLLLENVKGFEGSRSRDLITSMLTRAGFRFQEFLLSPTQFGVPNSRTRYYLIAKRSPAAHSS  159 (250)
Q Consensus        82 l~~~~~~ii~~~--~~P~~i~~ENV~~~~~~~~~~~i~~~L~~~GY~v~~~il~a~~~GvPq~R~R~~lva~~~~~~~~~  159 (250)
                      ||++++++|+++  + |++|+||||+|+.+++.++.+++.|+++||.+.+.+|||++||+||+|+|+|+||++++.    
T Consensus        97 l~~~~~~~i~~~~~k-Pk~~i~ENV~~l~~~~~~~~i~~~l~~~GY~v~~~vlna~dyGvPQ~R~Rvfivg~r~~~----  171 (343)
T d1g55a_          97 SFLHILDILPRLQKL-PKYILLENVKGFEVSSTRDLLIQTIENCGFQYQEFLLSPTSLGIPNSRLRYFLIAKLQSE----  171 (343)
T ss_dssp             HHHHHHHHGGGCSSC-CSEEEEEEETTGGGSHHHHHHHHHHHHTTEEEEEEEECGGGGTCSCCCCEEEEEEEESSS----
T ss_pred             ccchhhhhHhhhcCC-CceeeeeccCCcccchhhHHHHhhhhccccccceeeeeccccCCcccceeEEEEEEeCCc----
Confidence            999999999987  5 999999999999999999999999999999999999999999999999999999999987    


Q ss_pred             CCCcccCchhhhhhcCCccccCc-----CCCCCcccchhhhccCCCCCCCcccccccCHHHHHhccccceeecCCCCcce
Q psy3543         160 EASFCFETSSELMTELPKLKANT-----CNPLLSRMTLHGILDSTHPSGDLYRRYLVSDKDLLRRFHVFDIVNGKASSTN  234 (250)
Q Consensus       160 ~~~f~~~~~~~~~~~~p~~~~~~-----~~~~~~~~~l~d~Le~~~~~~~~~~~y~~~~~~~~~~~~~~div~p~~~~~~  234 (250)
                        ...|+.+......+|......     ......  +++++|++..+    ..+|+++.+...++....+.+.+...++.
T Consensus       172 --~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (343)
T d1g55a_         172 --PLPFQAPGQVLMEFPKIEIHRKNQQDSDLSVK--MLKDFLEDDTD----VNQYLLPPKSLLRYALLLDIVQPTCRRSV  243 (343)
T ss_dssp             --CCTTCCTTCEESSCCC------------CCCC--CGGGGCCTTCC----HHHHBCCHHHHHHHGGGCCEECTTCSCCC
T ss_pred             --cccCCCcccccccCCccccccccccccccccc--chhhhcccccc----hhhcccChHhhhhhhhhcccccccccccc
Confidence              333322222222333321100     001223  68999998876    68889999999999999999999999999


Q ss_pred             eeccCCcceeecccc
Q psy3543         235 CFTKAYTHYAEGKID  249 (250)
Q Consensus       235 cftk~y~~~~~g~gs  249 (250)
                      |++++++++.+++|+
T Consensus       244 ~~~~~~~~~~~~~~~  258 (343)
T d1g55a_         244 CFTKGYGSYIEGTGS  258 (343)
T ss_dssp             CCCTTTTTCCTTSCC
T ss_pred             hhcccccccccCCCc
Confidence            999999999998875
>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} Back     information, alignment and structure
>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} Back     information, alignment and structure
>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} Back     information, alignment and structure
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} Back     information, alignment and structure
>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure