Psyllid ID: psy3549

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200------
Protein Sequence
MNSWEDLRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIETLLTKVGWSLRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKEREQLLHSVRKDIDSYKNSASGLNRRMD
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
MNSWEDLRKQARKLENDIDVKLTClsklgtgahglrssesdtepllsadHMIESTASEIETLLTKVGWSLRKQARKLENDIDVKLTClsklgtgahglrssesdtepllsadHMIESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKEREQLLHSVRKDIDsyknsasglnrrmd
Flexible Loop (DISEMBL)
MNSWEDLRKQARKLENDIDVKLTCLSklgtgahglrssesdteplLSADHMIESTASEIETLLTKVGWSLRKQARKLENDIDVKLTCLSklgtgahglrssesdteplLSADHMIESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKEREQLLHsvrkdidsyknsasglnrrmd
Low Complexity Region (SEG)
MNSWEDLRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIETLLTKVGWSLRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKEREQLLHSVRKDIDSYKNSASGLNRRMD
Disordered region (IsUnstruct)
*****************IDVKLTCLSKL*****************************EIETLLTKVGWSLRKQARKLENDIDVKLTCLSKLGT*****************************************************************************************************************
Disordered Region (DISOPRED)
********KQARKLENDIDVKLTCLSK*************************************KVGWSLRKQARKLENDIDVKLTCLS******************************SEIETLLTK*************************QRHKEILEDYKKELSKTMS*****KEREQLLHSVR******************
Disordered Region (DISEMBL)
MNSWEDLRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIETLLTKVGWSLRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKEREQLLHSVRKDIDSYKNS*********
Disordered Region (DISPRO)
*NSWEDLRKQARKLENDIDVKLTCLSKLGTG*************LLSADHMIESTASEIETLLTKVGWSLRKQARKLENDIDVKLTCLSKLGTG*************LLSADHMIESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKEREQLLHSVRKDIDSYKN**********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNSWEDLRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIETLLTKVGWSLRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTxxxxxxxxxxxxxxxxxxxxxIHSRKEREQLLHSVRKDIDSYKNSASGLNRRMD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	206	2.2.26 [Sep-21-2011]
Q5RBL6	248	Golgi SNAP receptor compl	yes	N/A	0.645	0.536	0.523	3e-28
O08522	250	Golgi SNAP receptor compl	yes	N/A	0.650	0.536	0.5	1e-27
O88630	250	Golgi SNAP receptor compl	yes	N/A	0.650	0.536	0.493	1e-27
Q62931	250	Golgi SNAP receptor compl	yes	N/A	0.650	0.536	0.5	2e-27
Q2TBU3	250	Golgi SNAP receptor compl	yes	N/A	0.650	0.536	0.506	2e-27
O95249	250	Golgi SNAP receptor compl	yes	N/A	0.650	0.536	0.506	2e-27
Q9VE50	232	Golgi SNAP receptor compl	yes	N/A	0.635	0.564	0.5	1e-22
O22151	257	Golgi SNAP receptor compl	no	N/A	0.640	0.513	0.343	4e-16
A8XLW0	234	Golgi SNAP receptor compl	N/A	N/A	0.567	0.5	0.392	2e-14
Q95ZW1	234	Golgi SNAP receptor compl	yes	N/A	0.567	0.5	0.392	2e-14

>sp|Q5RBL6|GOSR1_PONAB Golgi SNAP receptor complex member 1 OS=Pongo abelii GN=GOSR1 PE=2 SV=1

 Score =  124 bits (312), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 77/147 (52%), Positives = 97/147 (65%), Gaps = 14/147 (9%)

Query: 70  LRKQARKLENDIDVKLTCLSKLGTG-AH-----GLRSSESDTEPLL---SADHMIESTAS 120
           LRKQAR+LEN++D+KL   SKL T  +H     G R S SDT PLL   S D M E+ A 
Sbjct: 12  LRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDS-SDTTPLLNGSSQDRMFETMAI 70

Query: 121 EIETLLTKLSNTNDKMSDIMAEGGK---DAAAIHTLQRHKEILEDYKKELSKTMSNIHSR 177
           EIE LL +L+  NDKM++     G    +AA +HTLQRH++IL+DY  E  KT +N  S 
Sbjct: 71  EIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMSI 130

Query: 178 KEREQLLHSVRKDIDSYKNSASGLNRR 204
           +ERE L+ SVRKDI+SYK S SG+N R
Sbjct: 131 RERENLMGSVRKDIESYK-SGSGVNNR 156

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. May play a protective role against hydrogen peroxide induced cytotoxicity under glutathione depleted conditions in neuronal cells by regulating the intracellular ROS levels via inhibition of p38 MAPK (MAPK11, MAPK12, MAPK13 and MAPK14). Participates in docking and fusion stage of ER to cis-Golgi transport. Plays an important physiological role in VLDL-transport vesicle-Golgi fusion and thus in VLDL delivery to the hepatic cis-Golgi.
Pongo abelii (taxid: 9601)

>sp|O08522|GOSR1_CRIGR Golgi SNAP receptor complex member 1 OS=Cricetulus griseus GN=GOSR1 PE=1 SV=1

 Score =  122 bits (307), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 74/148 (50%), Positives = 95/148 (64%), Gaps = 14/148 (9%)

Query: 70  LRKQARKLENDIDVKLTCLSKLGTG-AH------GLRSSESDTEPLL---SADHMIESTA 119
           LRKQAR+LEN++D+KL   SKL T  +H      G     SDT PLL   S D M E+ A
Sbjct: 12  LRKQARQLENELDLKLVSFSKLCTSYSHSSARDGGRDRYSSDTTPLLNGSSQDRMFETMA 71

Query: 120 SEIETLLTKLSNTNDKMSDIMAEGGK---DAAAIHTLQRHKEILEDYKKELSKTMSNIHS 176
            EIE LL +L+  NDKM++     G    +AA +HTLQRH++IL+DY  E  KT +N  +
Sbjct: 72  IEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMA 131

Query: 177 RKEREQLLHSVRKDIDSYKNSASGLNRR 204
            +ERE L+ SVRKDI+SYK S SG+N R
Sbjct: 132 IRERENLMGSVRKDIESYK-SGSGVNNR 158

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. May play a protective role against hydrogen peroxide induced cytotoxicity under glutathione depleted conditions in neuronal cells by regulating the intracellular ROS levels via inhibition of p38 MAPK (MAPK11, MAPK12, MAPK13 and MAPK14). Participates in docking and fusion stage of ER to cis-Golgi transport. Plays an important physiological role in VLDL-transport vesicle-Golgi fusion and thus in VLDL delivery to the hepatic cis-Golgi.

Cricetulus griseus (taxid: 10029)

>sp|O88630|GOSR1_MOUSE Golgi SNAP receptor complex member 1 OS=Mus musculus GN=Gosr1 PE=1 SV=2

 Score =  122 bits (307), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 73/148 (49%), Positives = 94/148 (63%), Gaps = 14/148 (9%)

Query: 70  LRKQARKLENDIDVKLTCLSKL-------GTGAHGLRSSESDTEPLL---SADHMIESTA 119
           LRKQAR+LEN++D+KL   SKL       G+   G     SDT PLL   S D M E+ A
Sbjct: 12  LRKQARQLENELDLKLVSFSKLCTSYSHSGSRDGGRDRYSSDTTPLLNGSSQDRMFETMA 71

Query: 120 SEIETLLTKLSNTNDKMSDIMAEGGK---DAAAIHTLQRHKEILEDYKKELSKTMSNIHS 176
            EIE LL +L+  NDKM++     G    +AA +HTLQRH++IL+DY  E  KT +N  +
Sbjct: 72  IEIEQLLARLTGVNDKMAEYTHSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFTA 131

Query: 177 RKEREQLLHSVRKDIDSYKNSASGLNRR 204
            +ERE L+ SVRKDI+SYK S SG+N R
Sbjct: 132 IRERENLMGSVRKDIESYK-SGSGVNNR 158

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. May play a protective role against hydrogen peroxide induced cytotoxicity under glutathione depleted conditions in neuronal cells by regulating the intracellular ROS levels via inhibition of p38 MAPK (MAPK11, MAPK12, MAPK13 and MAPK14). Participates in docking and fusion stage of ER to cis-Golgi transport. Plays an important physiological role in VLDL-transport vesicle-Golgi fusion and thus in VLDL delivery to the hepatic cis-Golgi.

Mus musculus (taxid: 10090)

>sp|Q62931|GOSR1_RAT Golgi SNAP receptor complex member 1 OS=Rattus norvegicus GN=Gosr1 PE=1 SV=1

 Score =  122 bits (306), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 74/148 (50%), Positives = 95/148 (64%), Gaps = 14/148 (9%)

Query: 70  LRKQARKLENDIDVKLTCLSKLGTG-AH------GLRSSESDTEPLL---SADHMIESTA 119
           LRKQAR+LEN++D+KL   SKL T  +H      G     SDT PLL   S D M E+ A
Sbjct: 12  LRKQARQLENELDLKLVSFSKLCTSYSHSSARDGGRDRYSSDTTPLLNGSSQDRMFETMA 71

Query: 120 SEIETLLTKLSNTNDKMSDIMAEGGK---DAAAIHTLQRHKEILEDYKKELSKTMSNIHS 176
            EIE LL +L+  NDKM++     G    +AA +HTLQRH++IL+DY  E  KT +N  +
Sbjct: 72  IEIEQLLARLTGVNDKMAEYTHSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMA 131

Query: 177 RKEREQLLHSVRKDIDSYKNSASGLNRR 204
            +ERE L+ SVRKDI+SYK S SG+N R
Sbjct: 132 IRERENLMGSVRKDIESYK-SGSGVNNR 158

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. May play a protective role against hydrogen peroxide induced cytotoxicity under glutathione depleted conditions in neuronal cells by regulating the intracellular ROS levels via inhibition of p38 MAPK (MAPK11, MAPK12, MAPK13 and MAPK14). Participates in docking and fusion stage of ER to cis-Golgi transport. Plays an important physiological role in VLDL-transport vesicle-Golgi fusion and thus in VLDL delivery to the hepatic cis-Golgi.

Rattus norvegicus (taxid: 10116)

>sp|Q2TBU3|GOSR1_BOVIN Golgi SNAP receptor complex member 1 OS=Bos taurus GN=GOSR1 PE=2 SV=1

 Score =  122 bits (306), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/148 (50%), Positives = 97/148 (65%), Gaps = 14/148 (9%)

Query: 70  LRKQARKLENDIDVKLTCLSKLGTG-AH-----GLR-SSESDTEPLL---SADHMIESTA 119
           LRKQAR+LEN++D+KL   SKL T  +H     G R    SDT PLL   S D M E+ A
Sbjct: 12  LRKQARQLENELDLKLVSFSKLCTSYSHSSARDGRRDRYSSDTTPLLNGSSQDRMFETMA 71

Query: 120 SEIETLLTKLSNTNDKMSDIMAEGGK---DAAAIHTLQRHKEILEDYKKELSKTMSNIHS 176
            EIE LL +L+  NDKM++  +  G    +AA +HTLQRH++IL+DY  E  KT +N  +
Sbjct: 72  IEIEQLLARLTGINDKMAEYTSSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFVA 131

Query: 177 RKEREQLLHSVRKDIDSYKNSASGLNRR 204
            +ERE L+ SVRKDI+SYK S SG+N R
Sbjct: 132 IRERENLMGSVRKDIESYK-SGSGVNNR 158

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. May play a protective role against hydrogen peroxide induced cytotoxicity under glutathione depleted conditions in neuronal cells by regulating the intracellular ROS levels via inhibition of p38 MAPK (MAPK11, MAPK12, MAPK13 and MAPK14). Participates in docking and fusion stage of ER to cis-Golgi transport. Plays an important physiological role in VLDL-transport vesicle-Golgi fusion and thus in VLDL delivery to the hepatic cis-Golgi.

Bos taurus (taxid: 9913)

>sp|O95249|GOSR1_HUMAN Golgi SNAP receptor complex member 1 OS=Homo sapiens GN=GOSR1 PE=1 SV=1

 Score =  122 bits (305), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/148 (50%), Positives = 96/148 (64%), Gaps = 14/148 (9%)

Query: 70  LRKQARKLENDIDVKLTCLSKLGTG-AH-----GLR-SSESDTEPLL---SADHMIESTA 119
           LRKQAR+LEN++D+KL   SKL T  +H     G R    SDT PLL   S D M E+ A
Sbjct: 12  LRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDRYSSDTTPLLNGSSQDRMFETMA 71

Query: 120 SEIETLLTKLSNTNDKMSDIMAEGGK---DAAAIHTLQRHKEILEDYKKELSKTMSNIHS 176
            EIE LL +L+  NDKM++     G    +AA +HTLQRH++IL+DY  E  KT +N  +
Sbjct: 72  IEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFMA 131

Query: 177 RKEREQLLHSVRKDIDSYKNSASGLNRR 204
            +ERE L+ SVRKDI+SYK S SG+N R
Sbjct: 132 IRERENLMGSVRKDIESYK-SGSGVNNR 158

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. May play a protective role against hydrogen peroxide induced cytotoxicity under glutathione depleted conditions in neuronal cells by regulating the intracellular ROS levels via inhibition of p38 MAPK (MAPK11, MAPK12, MAPK13 and MAPK14). Participates in docking and fusion stage of ER to cis-Golgi transport. Plays an important physiological role in VLDL-transport vesicle-Golgi fusion and thus in VLDL delivery to the hepatic cis-Golgi.

Homo sapiens (taxid: 9606)

>sp|Q9VE50|GOSR1_DROME Golgi SNAP receptor complex member 1 OS=Drosophila melanogaster GN=Gos28 PE=2 SV=1

 Score =  106 bits (264), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/138 (50%), Positives = 89/138 (64%), Gaps = 7/138 (5%)

Query: 70  LRKQARKLENDIDVKLTCLSKLGTGAHGLRSSES---DTEPLLSADHMIESTASEIETLL 126
           LRKQAR LEN+ID+KL   SK+G G+ G  S      DT PLL  +H+ +S + EIE +L
Sbjct: 9   LRKQARSLENEIDLKLVAFSKIGAGSGGGGSGGLGGVDTSPLL-GEHVFDSLSEEIEQML 67

Query: 127 TKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKEREQLLHS 186
            KLS+ N+ MSD+ A G   AAA+HTLQRH+EIL+ Y++E +K  +N   R ERE+LL  
Sbjct: 68  EKLSSLNESMSDLPASG---AAAMHTLQRHREILQGYRQEFNKICANHTMRIEREELLRG 124

Query: 187 VRKDIDSYKNSASGLNRR 204
                 S   S SGLNRR
Sbjct: 125 SGLATSSGSPSISGLNRR 142

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.

Drosophila melanogaster (taxid: 7227)

>sp|O22151|GOS12_ARATH Golgi SNAP receptor complex member 1-2 OS=Arabidopsis thaliana GN=GOS12 PE=1 SV=2

 Score = 84.3 bits (207), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 55/160 (34%), Positives = 80/160 (50%), Gaps = 28/160 (17%)

Query: 63  LTKVGWS-LRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTE--------------- 106
           L + GW  LR++ARK+E D+DVKL+  +KLG      R ++ DT+               
Sbjct: 8   LQESGWEELRREARKIEGDLDVKLSSYAKLGA-----RFTQGDTDLVMNYEKVLKCVLVS 62

Query: 107 -------PLLSADHMIESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEI 159
                  P + +    +S   EI++LL KL + ND MS   A      +    L RH++I
Sbjct: 63  GYVDTGSPTVGSGRSWKSMEMEIQSLLEKLLDINDSMSRCAASAAPTTSVTQKLARHRDI 122

Query: 160 LEDYKKELSKTMSNIHSRKEREQLLHSVRKDIDSYKNSAS 199
           L +Y +E  +   NI+S +E  +LL SVR DI  YK S S
Sbjct: 123 LHEYTQEFRRIKGNINSLREHAELLSSVRDDISEYKASGS 162

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.

Arabidopsis thaliana (taxid: 3702)

>sp|A8XLW0|GOSR1_CAEBR Golgi SNAP receptor complex member 1 OS=Caenorhabditis briggsae GN=gos-28 PE=3 SV=1

 Score = 79.3 bits (194), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 69/125 (55%), Gaps = 8/125 (6%)

Query: 68  W-SLRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIETLL 126
           W +LRK+AR  EN IDVKL  L+KL   +HG    + D + + S      +  +EIE L+
Sbjct: 5   WEALRKKARSTENSIDVKLVSLNKLTASSHG--GFDIDEKTVSSRQTTFRTVTTEIEGLI 62

Query: 127 TKLSNTNDKMSDIM-----AEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKERE 181
            +L+N ND M+D+      A    + A  HTL+RH+EIL DY  E  +   N+    +RE
Sbjct: 63  EQLTNINDDMNDVAGAQSSASWASNPAIQHTLRRHREILRDYGSEYRRARDNVDQVLQRE 122

Query: 182 QLLHS 186
            LL S
Sbjct: 123 LLLSS 127

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. Cooperates with ykt-6 for proper expression of Golgi-resident proteins. Required along with ykt-6 for normal embryonic development, seam cell division or differentiation, and ray formation.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q95ZW1|GOSR1_CAEEL Golgi SNAP receptor complex member 1 OS=Caenorhabditis elegans GN=gos-28 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/125 (39%), Positives = 70/125 (56%), Gaps = 8/125 (6%)

Query: 68  W-SLRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIETLL 126
           W +LRK+AR  EN IDVKL  L+KL   +HG    + D + + S     ++  +EIE L+
Sbjct: 5   WEALRKKARSTENSIDVKLVSLNKLTASSHG--GFDIDEKTVSSRQTSFKTVTTEIEGLI 62

Query: 127 TKLSNTNDKMSDIM-----AEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKERE 181
            +L+N ND M+D+      A    + A  HTL+RH+EIL DY  E  +   N+    +RE
Sbjct: 63  EQLTNINDDMNDVAGAQSSASWANNPAIQHTLRRHREILRDYGSEYRRARDNVDQVLQRE 122

Query: 182 QLLHS 186
            LL S
Sbjct: 123 LLLSS 127

Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor. Cooperates with ykt-6 for proper expression of Golgi-resident proteins. Required along with ykt-6 for normal embryonic development, seam cell division or differentiation, and ray formation.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
427786797	240	Putative golgi snap receptor complex mem	0.689	0.591	0.526	3e-33
110767101	232	PREDICTED: Golgi SNAP receptor complex m	0.665	0.590	0.545	1e-31
442749833	244	Putative snare protein gs28 [Ixodes rici	0.650	0.549	0.534	1e-31
241557125	240	golgi SNAP receptor complex member, puta	0.650	0.558	0.534	2e-31
332024417	232	Golgi SNAP receptor complex member 1 [Ac	0.665	0.590	0.538	4e-31
307179791	232	Golgi SNAP receptor complex member 1 [Ca	0.650	0.577	0.55	9e-31
383855952	232	PREDICTED: Golgi SNAP receptor complex m	0.665	0.590	0.531	9e-31
340717234	232	PREDICTED: probable 28 kDa Golgi SNARE p	0.665	0.590	0.517	3e-30
350407258	232	PREDICTED: probable 28 kDa Golgi SNARE p	0.665	0.590	0.517	5e-30
405975439	240	Golgi SNAP receptor complex member 1 [Cr	0.650	0.558	0.541	2e-29

>gi|427786797|gb|JAA58850.1| Putative golgi snap receptor complex member 1 [Rhipicephalus pulchellus]

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 79/150 (52%), Positives = 103/150 (68%), Gaps = 8/150 (5%)

Query: 62  LLTKVGWSL---RKQARKLENDIDVKLTCLSKLGTG--AHGLRSSESDTEPLLSADHMIE 116
           ++   G++L   RKQAR LEN+ID+KL   SKLGTG  +  L++   DT PLL  DHM E
Sbjct: 1   MMASAGYALEDLRKQARHLENEIDLKLVSFSKLGTGFGSRELKNESLDTAPLLGRDHMFE 60

Query: 117 STASEIETLLTKLSNTNDKMSDIMAE--GGKDAAAIHTLQRHKEILEDYKKELSKTMSNI 174
           +   EIE LL+KL   ND+MS + A   G   A  +HTLQRH++IL+DY +E  KT +N+
Sbjct: 61  TMTLEIEQLLSKLGEVNDQMSQVQASSGGAPSATVLHTLQRHRDILQDYVREFHKTRTNV 120

Query: 175 HSRKEREQLLHSVRKDIDSYKNSASGLNRR 204
            + +ER+ LL SVRKDIDSYKNS+S LNRR
Sbjct: 121 QAHRERDLLLGSVRKDIDSYKNSSS-LNRR 149

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|110767101|ref|XP_397354.3| PREDICTED: Golgi SNAP receptor complex member 1 isoform 1 [Apis mellifera] gi|380023114|ref|XP_003695372.1| PREDICTED: Golgi SNAP receptor complex member 1-like [Apis florea]

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 78/143 (54%), Positives = 98/143 (68%), Gaps = 6/143 (4%)

Query: 63  LTKVGWS-LRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASE 121
           L  V W  LR+QAR LEN+ID KL   SKLG    G +   SD  PLL  +H+ E+ ASE
Sbjct: 5   LDAVDWEDLRRQARHLENEIDAKLVAFSKLGVNT-GAKLVNSDEVPLLDEEHVFENMASE 63

Query: 122 IETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKERE 181
           IETLL KL + N+KMS +   G   AA +HT+QRHK+IL+DYK E +K  +N  +R++RE
Sbjct: 64  IETLLAKLFSINEKMSKLQPNG---AAMLHTMQRHKDILKDYKLEFNKIRNNFAARRDRE 120

Query: 182 QLLHSVRKDIDSYKNSASGLNRR 204
            LL SVRK+ID+YKN  SGLNRR
Sbjct: 121 DLLGSVRKEIDNYKN-VSGLNRR 142

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442749833|gb|JAA67076.1| Putative snare protein gs28 [Ixodes ricinus]

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 78/146 (53%), Positives = 103/146 (70%), Gaps = 12/146 (8%)

Query: 70  LRKQARKLENDIDVKLTCLSKLGTG--AHGLRSSESDTEPLLSADHMIESTASEIETLLT 127
           LRKQAR LEN+ID+KL   SKLGTG  +  ++S   DT PLLS+DHM E+   EIE LL+
Sbjct: 12  LRKQARHLENEIDLKLVSFSKLGTGLGSRDVKSDGLDTAPLLSSDHMFETMTLEIEQLLS 71

Query: 128 KLSNTNDKMSDIM-------AEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKER 180
           KL + ND+MS          A GG  A  +HTLQRH++IL+DY +E  KT +N+ ++++R
Sbjct: 72  KLGDVNDQMSQGQQLPFGQHAPGG--ATVVHTLQRHRDILQDYAREFQKTRANVQAQRQR 129

Query: 181 EQLLHSVRKDIDSYKNSASGLNRRMD 206
           + LL SVRKDI+SYKNS+S L+RR D
Sbjct: 130 DLLLGSVRKDIESYKNSSS-LSRRSD 154

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241557125|ref|XP_002400174.1| golgi SNAP receptor complex member, putative [Ixodes scapularis] gi|215501753|gb|EEC11247.1| golgi SNAP receptor complex member, putative [Ixodes scapularis]

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/146 (53%), Positives = 103/146 (70%), Gaps = 12/146 (8%)

Query: 70  LRKQARKLENDIDVKLTCLSKLGTG--AHGLRSSESDTEPLLSADHMIESTASEIETLLT 127
           LRKQAR LEN+ID+KL   SKLGTG  +  ++S   DT PLLS+DHM E+   EIE LL+
Sbjct: 12  LRKQARHLENEIDLKLVSFSKLGTGLGSRDVKSDGLDTAPLLSSDHMFETMTLEIEQLLS 71

Query: 128 KLSNTNDKMSDIM-------AEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKER 180
           KL + ND+MS          A GG  A  +HTLQRH++IL+DY +E  KT +N+ ++++R
Sbjct: 72  KLGDVNDQMSQGQQLPFGQHAPGG--ATVVHTLQRHRDILQDYAREFQKTRANVQAQRQR 129

Query: 181 EQLLHSVRKDIDSYKNSASGLNRRMD 206
           + LL SVRKDI+SYKNS+S L+RR D
Sbjct: 130 DLLLGSVRKDIESYKNSSS-LSRRSD 154

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332024417|gb|EGI64615.1| Golgi SNAP receptor complex member 1 [Acromyrmex echinatior]

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 77/143 (53%), Positives = 100/143 (69%), Gaps = 6/143 (4%)

Query: 63  LTKVGWS-LRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASE 121
           L  + W  LRKQAR LEN+ID KL   SKLG    G R + ++  PLL  + + E+ ASE
Sbjct: 5   LGTIDWEDLRKQARHLENEIDAKLVAFSKLGINT-GTRHATTEEVPLLDEEQVFENMASE 63

Query: 122 IETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKERE 181
           IETLL KL + N++MS++   G   AA +HT+QRHKEIL+DYK E +K  +N  +RK+RE
Sbjct: 64  IETLLAKLFSINERMSELQPNG---AAMLHTMQRHKEILKDYKLEFNKIRNNFTARKDRE 120

Query: 182 QLLHSVRKDIDSYKNSASGLNRR 204
            LL SVRK+ID+YK SA+GLNRR
Sbjct: 121 DLLGSVRKEIDNYK-SATGLNRR 142

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307179791|gb|EFN67981.1| Golgi SNAP receptor complex member 1 [Camponotus floridanus]

 Score =  139 bits (349), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 77/140 (55%), Positives = 97/140 (69%), Gaps = 6/140 (4%)

Query: 66  VGWS-LRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIET 124
           + W  LRKQAR LEN+ID KL   SKLG      R   +D  PLL  + + E+ ASEIET
Sbjct: 8   IDWEDLRKQARHLENEIDAKLVAFSKLGINTSA-RHVNADEIPLLDEEQVFENMASEIET 66

Query: 125 LLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKEREQLL 184
           LL+KL   N++MS++   G   AA +HT+QRHKEIL+DYK E +K  +N  +RK+RE LL
Sbjct: 67  LLSKLLFINERMSELQPNG---AAMLHTMQRHKEILKDYKLEFNKIRNNFMARKDREDLL 123

Query: 185 HSVRKDIDSYKNSASGLNRR 204
            SVRK+ID+YK SASGLNRR
Sbjct: 124 GSVRKEIDNYK-SASGLNRR 142

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855952|ref|XP_003703474.1| PREDICTED: Golgi SNAP receptor complex member 1-like [Megachile rotundata]

 Score =  139 bits (349), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 76/143 (53%), Positives = 98/143 (68%), Gaps = 6/143 (4%)

Query: 63  LTKVGWS-LRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASE 121
           L  V W  LR+QAR LEN+ID KL   SKLG    G +   +D  PLL  +H+ E+ ASE
Sbjct: 5   LGAVDWEDLRRQARHLENEIDAKLVAFSKLGVNT-GTKLVNADEVPLLDEEHVFENMASE 63

Query: 122 IETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKERE 181
           IE LL KL + N++MS++   G   AA +HT+QRHK+IL+DYK E SK  +N  +R++RE
Sbjct: 64  IEALLAKLFSINERMSELQPNG---AAMLHTMQRHKDILKDYKLEFSKIRNNFAARRDRE 120

Query: 182 QLLHSVRKDIDSYKNSASGLNRR 204
            LL SVRK+ID+YK S SGLNRR
Sbjct: 121 DLLGSVRKEIDNYK-SVSGLNRR 142

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717234|ref|XP_003397091.1| PREDICTED: probable 28 kDa Golgi SNARE protein-like [Bombus terrestris]

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 74/143 (51%), Positives = 99/143 (69%), Gaps = 6/143 (4%)

Query: 63  LTKVGWS-LRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASE 121
           L  V W  LR+QAR LEN+ID KL   SKLG  + G +   +D EPLL  +H+ ++ ASE
Sbjct: 5   LDAVDWEDLRRQARHLENEIDAKLVAFSKLGVNS-GSKIVNADEEPLLDEEHVFDNMASE 63

Query: 122 IETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKERE 181
           IE LL KL + N++MS +   G   AA +HT+QRHK+IL+DYK E +K  +N  +R++RE
Sbjct: 64  IEALLAKLFSINERMSKLQPNG---AAMLHTMQRHKDILKDYKLEFNKIRNNFDARRDRE 120

Query: 182 QLLHSVRKDIDSYKNSASGLNRR 204
            LL SVRK+ID+YK S +GLNRR
Sbjct: 121 DLLGSVRKEIDNYK-SVTGLNRR 142

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350407258|ref|XP_003488036.1| PREDICTED: probable 28 kDa Golgi SNARE protein-like [Bombus impatiens]

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 74/143 (51%), Positives = 98/143 (68%), Gaps = 6/143 (4%)

Query: 63  LTKVGWS-LRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASE 121
           L  V W  LR+QAR LEN+ID KL   SKLG  + G +    D EPLL  +H+ ++ ASE
Sbjct: 5   LDAVDWEDLRRQARHLENEIDAKLVAFSKLGVNS-GSKLVNGDEEPLLDEEHVFDNMASE 63

Query: 122 IETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKERE 181
           IE LL KL + N++MS +   G   AA +HT+QRHK+IL+DYK E +K  +N  +R++RE
Sbjct: 64  IEALLAKLFSINERMSKLQPNG---AAMLHTMQRHKDILKDYKLEFNKIRNNFDARRDRE 120

Query: 182 QLLHSVRKDIDSYKNSASGLNRR 204
            LL SVRK+ID+YK S +GLNRR
Sbjct: 121 DLLGSVRKEIDNYK-SVTGLNRR 142

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405975439|gb|EKC40004.1| Golgi SNAP receptor complex member 1 [Crassostrea gigas]

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 78/144 (54%), Positives = 101/144 (70%), Gaps = 10/144 (6%)

Query: 70  LRKQARKLENDIDVKLTCLSKLGTG-AHGLRSSESDTEPLL---SADHMIESTASEIETL 125
           LRKQAR+LEN+ID+KL   SKLGT  +H    SES   PL+   S++HM ++ A EIE L
Sbjct: 11  LRKQARQLENEIDLKLVSFSKLGTSYSHSDYGSES--SPLMQRSSSEHMFDTMAMEIEQL 68

Query: 126 LTKLSNTNDKMSDIMAEGGKD---AAAIHTLQRHKEILEDYKKELSKTMSNIHSRKEREQ 182
           L+KL  TND+M+D     G +   AA +HTLQRH++IL+DY  E  KT +NI + +ERE 
Sbjct: 69  LSKLQETNDRMADYTQNIGTNSPSAALLHTLQRHRDILQDYSHEFQKTRTNITALRERED 128

Query: 183 LLHSVRKDIDSYKNSASGLNRRMD 206
           LL SV +DI++YKNS SGLNRR D
Sbjct: 129 LLGSVHRDINAYKNS-SGLNRRTD 151

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
UNIPROTKB|F1NW80	242	GOSR1 "Golgi SNAP receptor com	0.660	0.561	0.517	4.4e-29
UNIPROTKB|B4DQA8	174	GOSR1 "Golgi SNAP receptor com	0.660	0.781	0.503	5e-28
UNIPROTKB|E9PCW1	248	GOSR1 "Golgi SNAP receptor com	0.660	0.548	0.503	5e-28
UNIPROTKB|K7GKB9	248	LOC100517676 "Golgi SNAP recep	0.660	0.548	0.503	6.4e-28
ZFIN|ZDB-GENE-050417-133	250	gosr1 "golgi SNAP receptor com	0.674	0.556	0.496	8.2e-28
UNIPROTKB|E2R812	250	GOSR1 "Golgi SNAP receptor com	0.660	0.544	0.503	1e-27
MGI|MGI:1858260	250	Gosr1 "golgi SNAP receptor com	0.660	0.544	0.503	1.3e-27
UNIPROTKB|Q2TBU3	250	GOSR1 "Golgi SNAP receptor com	0.660	0.544	0.503	1.3e-27
UNIPROTKB|O95249	250	GOSR1 "Golgi SNAP receptor com	0.660	0.544	0.503	1.7e-27
UNIPROTKB|F1RN67	250	LOC100517676 "Uncharacterized	0.660	0.544	0.503	2.2e-27

UNIPROTKB|F1NW80 GOSR1 "Golgi SNAP receptor complex member 1" [Gallus gallus (taxid:9031)]

 Score = 323 (118.8 bits), Expect = 4.4e-29, P = 4.4e-29
 Identities = 74/143 (51%), Positives = 93/143 (65%)

Query:    68 WSLRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLL---SADHMIESTASEIET 124
             W   KQAR+LEN++D+KL   SKL T +   R   SDT PLL   S D M E+ A EIE 
Sbjct:     9 WEGEKQARQLENELDLKLVSFSKLCTSSRDGRRDSSDTTPLLNGSSQDRMFETMAVEIEQ 68

Query:   125 LLTKLSNTNDKMSDIMAEGGK---DAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKERE 181
             LL KL+  NDKM++     G    +AA +HTLQRH++IL+DY  E  KT +N  + +ERE
Sbjct:    69 LLGKLTGINDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFLAIRERE 128

Query:   182 QLLHSVRKDIDSYKNSASGLNRR 204
              LL SVRKDI+SYK S SG+N R
Sbjct:   129 NLLGSVRKDIESYK-SGSGVNNR 150

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

UNIPROTKB|B4DQA8 GOSR1 "Golgi SNAP receptor complex member 1" [Homo sapiens (taxid:9606)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 75/149 (50%), Positives = 96/149 (64%)

Query:    68 WS-LRKQARKLENDIDVKLTCLSKLGTG-AHGL----RSSESDTEPLL---SADHMIEST 118
             W  LRKQAR+LEN++D+KL   SKL T  +H      R   SDT PLL   S D M E+ 
Sbjct:     9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDSSDTTPLLNGSSQDRMFETM 68

Query:   119 ASEIETLLTKLSNTNDKMSDIMAEGGK---DAAAIHTLQRHKEILEDYKKELSKTMSNIH 175
             A EIE LL +L+  NDKM++     G    +AA +HTLQRH++IL+DY  E  KT +N  
Sbjct:    69 AIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFM 128

Query:   176 SRKEREQLLHSVRKDIDSYKNSASGLNRR 204
             + +ERE L+ SVRKDI+SYK S SG+N R
Sbjct:   129 AIRERENLMGSVRKDIESYK-SGSGVNNR 156

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E9PCW1 GOSR1 "Golgi SNAP receptor complex member 1" [Homo sapiens (taxid:9606)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 75/149 (50%), Positives = 96/149 (64%)

Query:    68 WS-LRKQARKLENDIDVKLTCLSKLGTG-AHGL----RSSESDTEPLL---SADHMIEST 118
             W  LRKQAR+LEN++D+KL   SKL T  +H      R   SDT PLL   S D M E+ 
Sbjct:     9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDSSDTTPLLNGSSQDRMFETM 68

Query:   119 ASEIETLLTKLSNTNDKMSDIMAEGGK---DAAAIHTLQRHKEILEDYKKELSKTMSNIH 175
             A EIE LL +L+  NDKM++     G    +AA +HTLQRH++IL+DY  E  KT +N  
Sbjct:    69 AIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFM 128

Query:   176 SRKEREQLLHSVRKDIDSYKNSASGLNRR 204
             + +ERE L+ SVRKDI+SYK S SG+N R
Sbjct:   129 AIRERENLMGSVRKDIESYK-SGSGVNNR 156

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

UNIPROTKB|K7GKB9 LOC100517676 "Golgi SNAP receptor complex member 1" [Sus scrofa (taxid:9823)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 75/149 (50%), Positives = 96/149 (64%)

Query:    68 WS-LRKQARKLENDIDVKLTCLSKLGTG-AHGL----RSSESDTEPLL---SADHMIEST 118
             W  LRKQAR+LEN++D+KL   SKL T  +H      R   SDT PLL   S D M E+ 
Sbjct:     9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSARDGRRDSSDTTPLLNGSSQDRMFETM 68

Query:   119 ASEIETLLTKLSNTNDKMSDIMAEGGK---DAAAIHTLQRHKEILEDYKKELSKTMSNIH 175
             A EIE LL +L+  NDKM++     G    +AA +HTLQRH++IL+DY  E  KT +N  
Sbjct:    69 AIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKANFV 128

Query:   176 SRKEREQLLHSVRKDIDSYKNSASGLNRR 204
             + +ERE L+ SVRKDI+SYK S SG+N R
Sbjct:   129 AIRERENLMGSVRKDIESYK-SGSGVNNR 156

GO:0000139 "Golgi membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

ZFIN|ZDB-GENE-050417-133 gosr1 "golgi SNAP receptor complex member 1" [Danio rerio (taxid:7955)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 75/151 (49%), Positives = 96/151 (63%)

Query:    65 KVGWSLRKQARKLENDIDVKLTCLSKLGTGAHGLRS-----SESDTEPLL---SADHMIE 116
             K    LRKQAR+LEN++D+KL   SKL T     R      S SDT PLL   + D M E
Sbjct:     9 KTQTDLRKQARQLENELDLKLVSFSKLCTSYSSSRDGRRGDSSSDTTPLLCNSTQDRMFE 68

Query:   117 STASEIETLLTKLSNTNDKMSDIMAEGGK---DAAAIHTLQRHKEILEDYKKELSKTMSN 173
             + + EIE LL KL+  NDKM++  +  G    +AA +HTLQRH++IL+DY  E  KT SN
Sbjct:    69 TMSVEIEQLLAKLTGVNDKMAEYTSTPGVTSLNAALMHTLQRHRDILQDYTHEFHKTKSN 128

Query:   174 IHSRKEREQLLHSVRKDIDSYKNSASGLNRR 204
               + +ERE LL SVRKDI++YK S SG+N R
Sbjct:   129 FMAIREREDLLGSVRKDIETYK-SGSGVNNR 158

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|E2R812 GOSR1 "Golgi SNAP receptor complex member 1" [Canis lupus familiaris (taxid:9615)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 76/151 (50%), Positives = 97/151 (64%)

Query:    68 WS-LRKQARKLENDIDVKLTCLSKLGTG-AH-GLRSSE-----SDTEPLL---SADHMIE 116
             W  LRKQAR+LEN++D+KL   SKL T  +H G R        SDT PLL   S D M E
Sbjct:     9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSGARDGRRDRYSSDTTPLLNGSSQDRMFE 68

Query:   117 STASEIETLLTKLSNTNDKMSDIMAEGGK---DAAAIHTLQRHKEILEDYKKELSKTMSN 173
             + A EIE LL +L+  NDKM++     G    +AA +HTLQRH++IL+DY  E  KT +N
Sbjct:    69 TMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKAN 128

Query:   174 IHSRKEREQLLHSVRKDIDSYKNSASGLNRR 204
               + +ERE L+ SVRKDI+SYK S SG+N R
Sbjct:   129 FMAIRERENLMGSVRKDIESYK-SGSGVNNR 158

GO:0000139 "Golgi membrane" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

MGI|MGI:1858260 Gosr1 "golgi SNAP receptor complex member 1" [Mus musculus (taxid:10090)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 76/151 (50%), Positives = 97/151 (64%)

Query:    68 WS-LRKQARKLENDIDVKLTCLSKLGTG-AH-GLRSS-----ESDTEPLL---SADHMIE 116
             W  LRKQAR+LEN++D+KL   SKL T  +H G R        SDT PLL   S D M E
Sbjct:     9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSGSRDGGRDRYSSDTTPLLNGSSQDRMFE 68

Query:   117 STASEIETLLTKLSNTNDKMSDIMAEGGK---DAAAIHTLQRHKEILEDYKKELSKTMSN 173
             + A EIE LL +L+  NDKM++     G    +AA +HTLQRH++IL+DY  E  KT +N
Sbjct:    69 TMAIEIEQLLARLTGVNDKMAEYTHSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKAN 128

Query:   174 IHSRKEREQLLHSVRKDIDSYKNSASGLNRR 204
               + +ERE L+ SVRKDI+SYK S SG+N R
Sbjct:   129 FTAIRERENLMGSVRKDIESYK-SGSGVNNR 158

GO:0000139 "Golgi membrane" evidence=ISO;IDA

GO:0005484 "SNAP receptor activity" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005801 "cis-Golgi network" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=ISO

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISO

UNIPROTKB|Q2TBU3 GOSR1 "Golgi SNAP receptor complex member 1" [Bos taurus (taxid:9913)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 76/151 (50%), Positives = 98/151 (64%)

Query:    68 WS-LRKQARKLENDIDVKLTCLSKLGTG-AH-----GLRSS-ESDTEPLL---SADHMIE 116
             W  LRKQAR+LEN++D+KL   SKL T  +H     G R    SDT PLL   S D M E
Sbjct:     9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSARDGRRDRYSSDTTPLLNGSSQDRMFE 68

Query:   117 STASEIETLLTKLSNTNDKMSDIMAEGGK---DAAAIHTLQRHKEILEDYKKELSKTMSN 173
             + A EIE LL +L+  NDKM++  +  G    +AA +HTLQRH++IL+DY  E  KT +N
Sbjct:    69 TMAIEIEQLLARLTGINDKMAEYTSSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKAN 128

Query:   174 IHSRKEREQLLHSVRKDIDSYKNSASGLNRR 204
               + +ERE L+ SVRKDI+SYK S SG+N R
Sbjct:   129 FVAIRERENLMGSVRKDIESYK-SGSGVNNR 158

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|O95249 GOSR1 "Golgi SNAP receptor complex member 1" [Homo sapiens (taxid:9606)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 76/151 (50%), Positives = 97/151 (64%)

Query:    68 WS-LRKQARKLENDIDVKLTCLSKLGTG-AH-----GLRSS-ESDTEPLL---SADHMIE 116
             W  LRKQAR+LEN++D+KL   SKL T  +H     G R    SDT PLL   S D M E
Sbjct:     9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSTRDGRRDRYSSDTTPLLNGSSQDRMFE 68

Query:   117 STASEIETLLTKLSNTNDKMSDIMAEGGK---DAAAIHTLQRHKEILEDYKKELSKTMSN 173
             + A EIE LL +L+  NDKM++     G    +AA +HTLQRH++IL+DY  E  KT +N
Sbjct:    69 TMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKAN 128

Query:   174 IHSRKEREQLLHSVRKDIDSYKNSASGLNRR 204
               + +ERE L+ SVRKDI+SYK S SG+N R
Sbjct:   129 FMAIRERENLMGSVRKDIESYK-SGSGVNNR 158

GO:0015031 "protein transport" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=TAS

GO:0031201 "SNARE complex" evidence=TAS

GO:0005484 "SNAP receptor activity" evidence=IDA

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0000139 "Golgi membrane" evidence=IDA

UNIPROTKB|F1RN67 LOC100517676 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 76/151 (50%), Positives = 97/151 (64%)

Query:    68 WS-LRKQARKLENDIDVKLTCLSKLGTG-AH-----GLRSS-ESDTEPLL---SADHMIE 116
             W  LRKQAR+LEN++D+KL   SKL T  +H     G R    SDT PLL   S D M E
Sbjct:     9 WEDLRKQARQLENELDLKLVSFSKLCTSYSHSSARDGRRDRYSSDTTPLLNGSSQDRMFE 68

Query:   117 STASEIETLLTKLSNTNDKMSDIMAEGGK---DAAAIHTLQRHKEILEDYKKELSKTMSN 173
             + A EIE LL +L+  NDKM++     G    +AA +HTLQRH++IL+DY  E  KT +N
Sbjct:    69 TMAIEIEQLLARLTGVNDKMAEYTNSAGVPSLNAALMHTLQRHRDILQDYTHEFHKTKAN 128

Query:   174 IHSRKEREQLLHSVRKDIDSYKNSASGLNRR 204
               + +ERE L+ SVRKDI+SYK S SG+N R
Sbjct:   129 FVAIRERENLMGSVRKDIESYK-SGSGVNNR 158

GO:0042147 "retrograde transport, endosome to Golgi" evidence=IEA

GO:0005484 "SNAP receptor activity" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0005801 "cis-Golgi network" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5RBL6	GOSR1_PONAB	No assigned EC number	0.5238	0.6456	0.5362	yes	N/A
O95249	GOSR1_HUMAN	No assigned EC number	0.5067	0.6504	0.536	yes	N/A
Q2TBU3	GOSR1_BOVIN	No assigned EC number	0.5067	0.6504	0.536	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	206
KOG3208|consensus	231		100.0
KOG3208|consensus	231		99.52
PF05008	79	V-SNARE: Vesicle transport v-SNARE protein N-termi	93.95
KOG1666|consensus	220		93.81
PF13870	177	DUF4201: Domain of unknown function (DUF4201)	87.42
PF09177	97	Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IP	82.45

>KOG3208|consensus

Probab=100.00  E-value=2e-37  Score=265.74  Aligned_cols=138  Identities=49%  Similarity=0.758  Sum_probs=123.5

Q ss_pred             cccch-hHhHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3549          64 TKVGW-SLRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIETLLTKLSNTNDKMSDIMAE  142 (206)
Q Consensus        64 ~klsw-~LRkqAR~LE~qiD~kL~sySkla~~~~~~~~s~s~~~~~~~~e~~~~~le~eIE~lL~kL~~vnd~M~~~~~~  142 (206)
                      ...+| .||||||+||+++|+||++|+++++...++.  ..++.|....+..|+.++.|||.||++|++|||+|++...+
T Consensus         3 ~~s~we~LRkqArslE~~ld~kL~syskl~as~~gg~--~~~~s~~~~~~~s~ks~~~eie~LLeql~~vndsm~~~~~s   80 (231)
T KOG3208|consen    3 SSSSWEALRKQARSLENQLDSKLVSYSKLGASTHGGY--DIDTSPLSGSDRSFKSLENEIEGLLEQLQDVNDSMNDCASS   80 (231)
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCC--CCCcccccCcCcchhhhHHHHHHHHHHHHHHHHHHHhhccC
Confidence            45689 9999999999999999999999999744222  24666766668889999999999999999999999994445


Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHhhhhcccchhhhcCCCCCcccc
Q psy3549         143 GGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKEREQLLHSVRKDIDSYKNSASGLNRR  204 (206)
Q Consensus       143 ~~~s~s~~htLqRHREIL~Dy~~EF~R~r~ni~~~reR~nLL~sVr~DI~~~k~s~~g~~~r  204 (206)
                      ++++++++|||+||||||+||++||+|+++||.+.++|++||++|+.||..|+..+ |.+++
T Consensus        81 ~a~~aa~~htL~RHrEILqdy~qef~rir~n~~a~~e~~~Ll~s~~~~~~~~~~~~-~~~~~  141 (231)
T KOG3208|consen   81 PANSAAVMHTLQRHREILQDYTQEFRRIRSNIDAKRERESLLESVRADISSYPSAS-GFNRG  141 (231)
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccC-CCchH
Confidence            77899999999999999999999999999999999999999999999999999988 88865

>KOG3208|consensus

Probab=99.52  E-value=7.8e-15  Score=126.65  Aligned_cols=64  Identities=50%  Similarity=0.729  Sum_probs=55.0

Q ss_pred             CcHHHHHHHHHHHHhhHhhhhhhhhhhccCCCCCCCCCCCCCCCCchhhhHHhHHHHHhhhhcccc
Q psy3549           2 NSWEDLRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIETLLTKVG   67 (206)
Q Consensus         2 ~~~~~lr~~ar~le~~~d~kl~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~eie~LL~kls   67 (206)
                      ++||+||||||+|||+||+||++|+|||++..++  -..|+.|+...+++|++|+.|||.||.++.
T Consensus         5 s~we~LRkqArslE~~ld~kL~syskl~as~~gg--~~~~~s~~~~~~~s~ks~~~eie~LLeql~   68 (231)
T KOG3208|consen    5 SSWEALRKQARSLENQLDSKLVSYSKLGASTHGG--YDIDTSPLSGSDRSFKSLENEIEGLLEQLQ   68 (231)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC--CCCCcccccCcCcchhhhHHHHHHHHHHHH
Confidence            4699999999999999999999999999984433  335777876669999999999999999863

>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles

Probab=93.95  E-value=1.1  Score=32.04  Aligned_cols=56  Identities=21%  Similarity=0.175  Sum_probs=40.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy3549         115 IESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNIH  175 (206)
Q Consensus       115 ~~~le~eIE~lL~kL~~vnd~M~~~~~~~~~s~s~~htLqRHREIL~Dy~~EF~R~r~ni~  175 (206)
                      -..+-.+|+..|+...+++++|.--+.+.|+ +    .=..+...|..|+.++.+++..++
T Consensus        23 r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p~-s----~r~~~~~kl~~yr~~l~~lk~~l~   78 (79)
T PF05008_consen   23 RKSLIREIERDLDEAEELLKQMELEVRSLPP-S----ERNQYKSKLRSYRSELKKLKKELK   78 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCTS-H-H----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH-H----HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4788889999999999999999977765422 1    124455667777777777766654

The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.

>KOG1666|consensus

Probab=93.81  E-value=1.1  Score=39.34  Aligned_cols=75  Identities=25%  Similarity=0.308  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHhhhhcccc
Q psy3549         116 ESTASEIETLLTKLSNTNDKMSDIMAEGGK--DAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKEREQLLHSVRKD  190 (206)
Q Consensus       116 ~~le~eIE~lL~kL~~vnd~M~~~~~~~~~--s~s~~htLqRHREIL~Dy~~EF~R~r~ni~~~reR~nLL~sVr~D  190 (206)
                      ..+..+|+..|+...+++++|.-.+...||  -+++...|+-++-=|.++++||+++.+.--...+|.+++..+-.|
T Consensus        35 k~~l~~i~~~leEa~ell~qMdlEvr~lp~~~Rs~~~~KlR~yksdl~~l~~e~k~~~~~~~~~~~rde~~~~~~ad  111 (220)
T KOG1666|consen   35 KQLLSEIDSKLEEANELLDQMDLEVRELPPNFRSSYLSKLREYKSDLKKLKRELKRTTSRNLNAGDRDELLEALEAD  111 (220)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccchHHHHHhhhhcc
Confidence            568899999999999999999988776444  345556667777777777777777774433455777777665544

>PF13870 DUF4201: Domain of unknown function (DUF4201)

Probab=87.42  E-value=12  Score=30.83  Aligned_cols=62  Identities=23%  Similarity=0.291  Sum_probs=54.2

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q psy3549         115 IESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSRKE  179 (206)
Q Consensus       115 ~~~le~eIE~lL~kL~~vnd~M~~~~~~~~~s~s~~htLqRHREIL~Dy~~EF~R~r~ni~~~re  179 (206)
                      |+.+..+...+..++++=|..|.++-.   .....+|.|+.+|+.|+....++..++..|....+
T Consensus        44 FeqLkien~~l~~kIeERn~eL~~Lk~---~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~  105 (177)
T PF13870_consen   44 FEQLKIENQQLNEKIEERNKELLKLKK---KIGKTVQILTHVKEKLHFLSEELERLKQELKDREE  105 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999998754   34667899999999999999999999988876544

>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle

Probab=82.45  E-value=18  Score=27.04  Aligned_cols=57  Identities=7%  Similarity=0.201  Sum_probs=41.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHH----HHHHHHHHHHHHHHHHHHHHHH
Q psy3549         115 IESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAA----IHTLQRHKEILEDYKKELSKTM  171 (206)
Q Consensus       115 ~~~le~eIE~lL~kL~~vnd~M~~~~~~~~~s~s~----~htLqRHREIL~Dy~~EF~R~r  171 (206)
                      +..+..+|...|+-+..-++.|.+.+...-.++.+    ...|++||..+.+.+.+...++
T Consensus        37 ~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~~Rr~fv~~~~~~i~~~k   97 (97)
T PF09177_consen   37 LKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEISRRRQFVSAIRNQIKQMK   97 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHHHHHHHHHHHHHHHHhcC
Confidence            67888888888888888888888776621012333    2569999999999999887764

Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	206
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 2e-04
 Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 52/197 (26%)

Query: 22  LTCLSK-LGTGAHGLRSSESDTEPLLSADHMIESTASEIETLLTKVGWSLRKQARKLEND 80
            + L K L      L      T P   +  +I    S  + L T   W       KL   
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLS--II--AESIRDGLATWDNW-KHVNCDKLTTI 358

Query: 81  IDVKLTCLS---------KLGTGAHGLRSSESDTEPLLSADHMI--ESTASEIETLLTKL 129
           I+  L  L          +L         S      LLS   +I  +   S++  ++ KL
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSV----FPPSAHIPTILLS---LIWFDVIKSDVMVVVNKL 411

Query: 130 SNTNDKMSDIMAEGGKDAAAIHTLQR------------HKEILEDYKKELSKTMSNIHSR 177
                K S +  +  +   +I ++              H+ I++ Y         NI   
Sbjct: 412 H----KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY---------NIPKT 458

Query: 178 KEREQLLHSVRKDIDSY 194
            + + L+      +D Y
Sbjct: 459 FDSDDLI---PPYLDQY 472

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	206
1vcs_A	102	Vesicle transport through interaction with T- snar	94.97
2qyw_A	102	Vesicle transport through interaction with T-SNAR	90.42
4dnd_A	130	Syntaxin-10, SYN10; structural genomics, protein s	88.93
3onj_A	97	T-snare VTI1; helix, HABC, protein transport; 1.92	88.86

>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1

Probab=94.97  E-value=0.41  Score=35.67  Aligned_cols=55  Identities=9%  Similarity=0.143  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC--HHHHHHHHHHHHHHHHHHHHHHHH
Q psy3549         116 ESTASEIETLLTKLSNTNDKMSDIMAEGGKD--AAAIHTLQRHKEILEDYKKELSKT  170 (206)
Q Consensus       116 ~~le~eIE~lL~kL~~vnd~M~~~~~~~~~s--~s~~htLqRHREIL~Dy~~EF~R~  170 (206)
                      .....+|+..|+.-.+++++|.--+.+.|++  +.+...|.-||-=|..++++|+++
T Consensus        37 k~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~elk~~   93 (102)
T 1vcs_A           37 KQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLETDFKRS   93 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5678899999999999999999777664432  334444444444444444444443

>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V

Probab=90.42  E-value=3.1  Score=30.85  Aligned_cols=54  Identities=13%  Similarity=0.159  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy3549         116 ESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNI  174 (206)
Q Consensus       116 ~~le~eIE~lL~kL~~vnd~M~~~~~~~~~s~s~~htLqRHREIL~Dy~~EF~R~r~ni  174 (206)
                      ...-.+|+..|+.-.+++++|.--+.+.| ++...    .....|.+|++++.+++..+
T Consensus        48 k~~i~~ie~~ldEA~eLl~qMelE~r~~p-~s~R~----~~~~klr~Yk~dL~~lk~el  101 (102)
T 2qyw_A           48 KKLVRDFDEKQQEANETLAEMEEELRYAP-LTFRN----PMMSKLRNYRKDLAKLHREV  101 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTSC-HHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCC-HHHHH----HHHHHHHHHHHHHHHHHhhc
Confidence            67788999999999999999997766543 22222    34456778888888877654

>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A

Probab=88.93  E-value=5.2  Score=31.05  Aligned_cols=94  Identities=12%  Similarity=0.145  Sum_probs=56.1

Q ss_pred             hHhHHHHHHHHHHHHHHHHhhhhhcccCCCCCCCCCCCCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHH
Q psy3549          69 SLRKQARKLENDIDVKLTCLSKLGTGAHGLRSSESDTEPLLSADHMIESTASEIETLLTKLSNTNDKMSDIMAEGGKDAA  148 (206)
Q Consensus        69 ~LRkqAR~LE~qiD~kL~sySkla~~~~~~~~s~s~~~~~~~~e~~~~~le~eIE~lL~kL~~vnd~M~~~~~~~~~s~s  148 (206)
                      .++.++..-=+.++..+.+|..+....+ .+          +.++ |..+..||+..|.-+..-++.|.+.+.-.-..++
T Consensus        31 ~Vk~EVq~sl~~l~~l~~~w~~l~~~~~-~~----------s~~E-~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~   98 (130)
T 4dnd_A           31 VVRGEVQKAVNTARGLYQRWCELLQESA-AV----------GREE-LDWTTNELRNGLRSIEWDLEDLEETIGIVEANPG   98 (130)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHC--------------------CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhccCC-Cc----------chHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH
Confidence            4444443333345666777776644321 00          1222 6777888888887777777777776551001122


Q ss_pred             H----HHHHHHHHHHHHHHHHHHHHHHhHH
Q psy3549         149 A----IHTLQRHKEILEDYKKELSKTMSNI  174 (206)
Q Consensus       149 ~----~htLqRHREIL~Dy~~EF~R~r~ni  174 (206)
                      +    ...|+++|..+.+.+.+...++..+
T Consensus        99 kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l  128 (130)
T 4dnd_A           99 KFKLPAGDLQERKVFVERMREAVQEMKDHM  128 (130)
T ss_dssp             HHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            2    2568999999999999999998765

>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C

Probab=88.86  E-value=5.4  Score=29.17  Aligned_cols=59  Identities=19%  Similarity=0.229  Sum_probs=40.5

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHH
Q psy3549         115 IESTASEIETLLTKLSNTNDKMSDIMAEG-GKDAAAIHTLQRHKEILEDYKKELSK-TMSNIHSR  177 (206)
Q Consensus       115 ~~~le~eIE~lL~kL~~vnd~M~~~~~~~-~~s~s~~htLqRHREIL~Dy~~EF~R-~r~ni~~~  177 (206)
                      -..+-.+|+.-|+...+++++|.--+.+. +|++...    .....|.+|++++.+ ++..++..
T Consensus        32 Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~----~~~~klr~Yk~dl~~~lk~~lk~l   92 (97)
T 3onj_A           32 RNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERA----TYKAKLREWKKTIQSDIKRPLQSL   92 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH----HHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            37788999999999999999999877753 1223222    334456666666666 66666544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	206
d1vcsa1	89	Vesicle transport v-SNARE protein Vti1-like 2 {Mou	95.4

>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Vesicle transport v-SNARE protein Vti1-like 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.40  E-value=0.12  Score=36.28  Aligned_cols=58  Identities=16%  Similarity=0.203  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh
Q psy3549         116 ESTASEIETLLTKLSNTNDKMSDIMAEGGKDAAAIHTLQRHKEILEDYKKELSKTMSNIHSRK  178 (206)
Q Consensus       116 ~~le~eIE~lL~kL~~vnd~M~~~~~~~~~s~s~~htLqRHREIL~Dy~~EF~R~r~ni~~~r  178 (206)
                      ..+-.+|+.-|+...+++++|.--+.+.|+ +.......|    |.+|+.|+.+++..++.++
T Consensus        30 k~~l~~ie~~leEA~ell~qMelEvr~~p~-s~R~~~~~k----lr~Yk~dl~~lk~elk~a~   87 (89)
T d1vcsa1          30 KQMVANVEKQLEEARELLEQMDLEVREIPP-QSRGMYSNR----MRSYKQEMGKLETDFKRSR   87 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTSCT-TTHHHHHHH----HHHHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhCCH-HHHHHHHHH----HHHHHHHHHHHHHHHHhhc
Confidence            678889999999999999999977776433 333333333    6677777777777766654