Psyllid ID: psy35

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------7
Protein Sequence
MPIDLVIDERDSTKPLPELGGTTNGNDGRSNADSASHDGASTPDVGCLPVHLSLWLVWLMGFPLITAKL
Secondary Structure (PSIPRED)
ccccEEEEccccccccccccccccccccccccccccccccccccEEcHHHHHHHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccEEEEcc
Coil and Loop (DISEMBL)
mpidlviderdstkplpelggttngndgrsnadsashdgastpdvgclpvHLSLWLVWLMGfplitakl
Flexible Loop (DISEMBL)
mpidlviderdstkplpelggttngndgrsNADSASHDGASTPDVGCLPVHLSLWLVWLMGFPLITAKL
Low Complexity Region (SEG)
MPIDLVIDERDSTKPLPELGGTTNGNDGRSNADSASHDGASTPDVGCLPVHLSLWLVWLMGFPLITAKL
Disordered region (IsUnstruct)
********************************************VGCLPVHLSLWLVWLMGFPLIT***
Disordered Region (DISOPRED)
*PIDLVI************************************DVGCLPVHLSLWLVWLMGFPLITAKL
Disordered Region (DISEMBL)
MPIDLVIDERDSTKPLPELGGTTNGNDGR************TPDVGCLPVHLSLWLVWLMGFPLITAKL
Disordered Region (DISPRO)
*PIDLVIDERD*******************************PDVGCLPVHLSLWLVWLMGFPLITAKL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPIDLVIDERDSTKPLPELGGTTNGNDGRSNADSASHDGASTPDVGCLPVHLSLWLVWLMGFPLITAKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	69	2.2.26 [Sep-21-2011]
O46339	487	Homeobox protein homothor	no	N/A	0.608	0.086	0.804	2e-09

>sp|O46339|HTH_DROME Homeobox protein homothorax OS=Drosophila melanogaster GN=hth PE=1 SV=1

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/46 (80%), Positives = 40/46 (86%), Gaps = 4/46 (8%)

Query: 1   MPIDLVIDERDSTKPLPELGGTTNGNDGRSNADSASH-DGASTPDV 45
           MPIDLVIDERD+TKP PEL G+ NG +GRSNADS SH DGASTPDV
Sbjct: 200 MPIDLVIDERDTTKP-PEL-GSANG-EGRSNADSTSHTDGASTPDV 242

All isoforms are required for patterning of the embryonic cuticle. Acts with exd to delimit the eye field and prevent inappropriate eye development. Isoforms that carry the homeodomain are required for proper localization of chordotonal organs within the peripheral nervous system and antennal identity; required to activate antennal-specific genes, such as sal and to repress the leg-like expression of dac. Necessary for the nuclear localization of the essential HOX cofactor, extradenticle (exd). Both necessary and sufficient for inner photoreceptors to adopt the polarization-sensitive 'dorsal rim area' (DRA) of the eye fate instead of the color-sensitive default state. This occurs by increasing rhabdomere size and uncoupling R7-R8 communication to allow both cells to express the same opsin rather than different ones as required for color vision.
Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
46405861	210	homothorax [Oncopeltus fasciatus]	0.652	0.214	0.804	1e-11
242022719	221	Homeobox protein Meis1, putative [Pedicu	0.739	0.230	0.763	2e-10
170053896	170	homothorax homeobox protein [Culex quinq	0.666	0.270	0.78	5e-09
157129911	242	homothorax homeobox protein [Aedes aegyp	0.666	0.190	0.78	1e-08
78706448	266	homothorax, isoform E [Drosophila melano	0.608	0.157	0.804	2e-08
33636517	184	RE52036p [Drosophila melanogaster]	0.608	0.228	0.804	3e-08
347967319	491	AGAP002178-PA [Anopheles gambiae str. PE	0.608	0.085	0.826	3e-08
86515328	456	homothorax [Tribolium castaneum] gi|3849	0.637	0.096	0.787	4e-08
78706734	266	homothorax, isoform F [Drosophila melano	0.681	0.176	0.745	4e-08
46405863	209	homothorax [Tribolium castaneum]	0.637	0.210	0.787	8e-08

>gi|46405861|gb|AAS93633.1| homothorax [Oncopeltus fasciatus]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 37/46 (80%), Positives = 41/46 (89%), Gaps = 1/46 (2%)

Query: 1  MPIDLVIDERDSTKPLPELGGTTNGNDGRSNADSASH-DGASTPDV 45
          MP+DLVIDER+S+KPLPE+G   NGNDGRSNADS SH DGASTPDV
Sbjct: 27 MPVDLVIDERESSKPLPEIGTPANGNDGRSNADSTSHTDGASTPDV 72

Source: Oncopeltus fasciatus

Species: Oncopeltus fasciatus

Genus: Oncopeltus

Family: Lygaeidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242022719|ref|XP_002431786.1| Homeobox protein Meis1, putative [Pediculus humanus corporis] gi|212517111|gb|EEB19048.1| Homeobox protein Meis1, putative [Pediculus humanus corporis]

 Score = 69.7 bits (169), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/55 (76%), Positives = 45/55 (81%), Gaps = 4/55 (7%)

Query: 1   MPIDLVIDERDST-KPLPELGGTTNGNDG-RSNADSASH-DGASTPDVGCLPVHL 52
           MPIDLVIDERD T KPL ELGG+TNGN+G RSNADS SH DGASTPDV  + V L
Sbjct: 161 MPIDLVIDERDPTAKPL-ELGGSTNGNEGTRSNADSTSHTDGASTPDVEAMVVVL 214

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170053896|ref|XP_001862883.1| homothorax homeobox protein [Culex quinquefasciatus] gi|167874353|gb|EDS37736.1| homothorax homeobox protein [Culex quinquefasciatus]

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/50 (78%), Positives = 41/50 (82%), Gaps = 4/50 (8%)

Query: 1   MPIDLVIDERDSTKPLPELGGTTNGNDGRSNADSASH-DGASTPDVGCLP 49
           MPIDLVIDERD+TKP PELGG  NG +GRSNADS SH DGASTPDV   P
Sbjct: 104 MPIDLVIDERDTTKP-PELGG-ANG-EGRSNADSTSHTDGASTPDVVSTP 150

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157129911|ref|XP_001661813.1| homothorax homeobox protein [Aedes aegypti] gi|108872033|gb|EAT36258.1| AAEL011643-PA [Aedes aegypti]

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 39/50 (78%), Positives = 41/50 (82%), Gaps = 4/50 (8%)

Query: 1   MPIDLVIDERDSTKPLPELGGTTNGNDGRSNADSASH-DGASTPDVGCLP 49
           MPIDLVIDERD+TKP PELGG  NG +GRSNADS SH DGASTPDV   P
Sbjct: 176 MPIDLVIDERDTTKP-PELGG-ANG-EGRSNADSTSHTDGASTPDVVSTP 222

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|78706448|ref|NP_001014613.2| homothorax, isoform E [Drosophila melanogaster] gi|390177410|ref|XP_003736368.1| GA14330, isoform F [Drosophila pseudoobscura pseudoobscura] gi|71854556|gb|AAX52943.2| homothorax, isoform E [Drosophila melanogaster] gi|388859031|gb|EIM52441.1| GA14330, isoform F [Drosophila pseudoobscura pseudoobscura] gi|401664569|gb|AFP95719.1| FI20291p1 [Drosophila melanogaster]

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/46 (80%), Positives = 40/46 (86%), Gaps = 4/46 (8%)

Query: 1   MPIDLVIDERDSTKPLPELGGTTNGNDGRSNADSASH-DGASTPDV 45
           MPIDLVIDERD+TKP PEL G+ NG +GRSNADS SH DGASTPDV
Sbjct: 200 MPIDLVIDERDTTKP-PEL-GSANG-EGRSNADSTSHTDGASTPDV 242

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|33636517|gb|AAQ23556.1| RE52036p [Drosophila melanogaster]

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 37/46 (80%), Positives = 40/46 (86%), Gaps = 4/46 (8%)

Query: 1   MPIDLVIDERDSTKPLPELGGTTNGNDGRSNADSASH-DGASTPDV 45
           MPIDLVIDERD+TKP PEL G+ NG +GRSNADS SH DGASTPDV
Sbjct: 118 MPIDLVIDERDTTKP-PEL-GSANG-EGRSNADSTSHTDGASTPDV 160

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347967319|ref|XP_308010.5| AGAP002178-PA [Anopheles gambiae str. PEST] gi|333466350|gb|EAA03775.5| AGAP002178-PA [Anopheles gambiae str. PEST]

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/46 (82%), Positives = 40/46 (86%), Gaps = 4/46 (8%)

Query: 1   MPIDLVIDERDSTKPLPELGGTTNGNDGRSNADSASH-DGASTPDV 45
           MPIDLVIDERD+TKP PELGG  NG +GRSNADS SH DGASTPDV
Sbjct: 204 MPIDLVIDERDTTKP-PELGG-ANG-EGRSNADSTSHTDGASTPDV 246

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|86515328|ref|NP_001034489.1| homothorax [Tribolium castaneum] gi|38490517|emb|CAD57735.1| homothorax [Tribolium castaneum] gi|270010957|gb|EFA07405.1| hypothetical protein TcasGA2_TC008629 [Tribolium castaneum]

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/47 (78%), Positives = 39/47 (82%), Gaps = 3/47 (6%)

Query: 1   MPIDLVIDERDSTKPLPELGGTTNGNDG-RSNADSASH-DGASTPDV 45
           MPIDLVIDERD  KP PEL G+TNG+ G RSNADS SH DGASTPDV
Sbjct: 183 MPIDLVIDERDGGKP-PELTGSTNGDGGARSNADSTSHTDGASTPDV 228

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|78706734|ref|NP_001027170.1| homothorax, isoform F [Drosophila melanogaster] gi|390177408|ref|XP_003736367.1| GA14330, isoform E [Drosophila pseudoobscura pseudoobscura] gi|71854557|gb|AAZ52527.1| homothorax, isoform F [Drosophila melanogaster] gi|85857472|gb|ABC86272.1| RE37648p [Drosophila melanogaster] gi|388859030|gb|EIM52440.1| GA14330, isoform E [Drosophila pseudoobscura pseudoobscura]

 Score = 62.0 bits (149), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 38/51 (74%), Positives = 41/51 (80%), Gaps = 4/51 (7%)

Query: 1   MPIDLVIDERDSTKPLPELGGTTNGNDGRSNADSASH-DGASTPDVGCLPV 50
           MPIDLVIDERD+TKP PEL G+ NG +GRSNADS SH DGASTPDV   P 
Sbjct: 200 MPIDLVIDERDTTKP-PEL-GSANG-EGRSNADSTSHTDGASTPDVVSTPF 247

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|46405863|gb|AAS93634.1| homothorax [Tribolium castaneum]

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 37/47 (78%), Positives = 39/47 (82%), Gaps = 3/47 (6%)

Query: 1  MPIDLVIDERDSTKPLPELGGTTNGNDG-RSNADSASH-DGASTPDV 45
          MPIDLVIDERD  KP PEL G+TNG+ G RSNADS SH DGASTPDV
Sbjct: 27 MPIDLVIDERDGGKP-PELTGSTNGDGGARSNADSTSHTDGASTPDV 72

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
FB|FBgn0001235	487	hth "homothorax" [Drosophila m	0.608	0.086	0.804	2.4e-11

FB|FBgn0001235 hth "homothorax" [Drosophila melanogaster (taxid:7227)]

 Score = 164 (62.8 bits), Expect = 2.4e-11, P = 2.4e-11
 Identities = 37/46 (80%), Positives = 40/46 (86%)

Query:     1 MPIDLVIDERDSTKPLPELGGTTNGNDGRSNADSASH-DGASTPDV 45
             MPIDLVIDERD+TKP PELG + NG +GRSNADS SH DGASTPDV
Sbjct:   200 MPIDLVIDERDTTKP-PELG-SANG-EGRSNADSTSHTDGASTPDV 242


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.137   0.434    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       69        69   0.00091  102 3  11 22  0.39    29
                                                     29  0.39    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  532 (57 KB)
  Total size of DFA:  102 KB (2070 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.08u 0.09s 9.17t   Elapsed:  00:00:18
  Total cpu time:  9.08u 0.09s 9.17t   Elapsed:  00:00:18
  Start:  Thu Aug 15 12:47:32 2013   End:  Thu Aug 15 12:47:50 2013

GO:0007422 "peripheral nervous system development" evidence=NAS;IMP;TAS

GO:0005515 "protein binding" evidence=IPI

GO:0034504 "protein localization to nucleus" evidence=IPI

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0001654 "eye development" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0003677 "DNA binding" evidence=IDA

GO:0007479 "leg disc proximal/distal pattern formation" evidence=TAS

GO:0007420 "brain development" evidence=IMP

GO:0048749 "compound eye development" evidence=IMP

GO:0007432 "salivary gland boundary specification" evidence=NAS;TAS

GO:0010092 "specification of organ identity" evidence=TAS

GO:0009954 "proximal/distal pattern formation" evidence=TAS

GO:0001752 "compound eye photoreceptor fate commitment" evidence=IMP

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0007480 "imaginal disc-derived leg morphogenesis" evidence=IMP

GO:0035282 "segmentation" evidence=IMP

GO:0048735 "haltere morphogenesis" evidence=IMP

GO:0007476 "imaginal disc-derived wing morphogenesis" evidence=IMP

GO:0007383 "specification of segmental identity, antennal segment" evidence=IMP

GO:0007380 "specification of segmental identity, head" evidence=IMP

GO:0005667 "transcription factor complex" evidence=IPI

GO:0003705 "RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity" evidence=IDA;IPI

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA;IMP

GO:0008134 "transcription factor binding" evidence=IPI

GO:0045664 "regulation of neuron differentiation" evidence=IMP

GO:0042659 "regulation of cell fate specification" evidence=IMP

GO:0007525 "somatic muscle development" evidence=IMP

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00