Psyllid ID: psy3622

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960----

MSSNMATSTEIEEFLKGPLVTWLLSCLSNPDRLSDYEDLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNIKSLYEEELCQIVLVLPDVLIIGREPESKQGLENMKLLLLLLLGCAVQCPNKETFIERIKELPVESQHALVDCIKQVTENQDIVLSLDNCEGVPTEVMVSNVKALAKERDRYLQTWRLVEEKRNPSIGNSECQHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALESEIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQTDAENILEKILSSPEILNAVKKKLGVEHFNDESSLNNAKLEVDLKTSQSQISSLTSQHTALQLANSQLILANHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNKLEDDRRKLMEHVTNLLAQYHELLTHSLEDKDHYHEEEKNFSDKLNNLHRQKEKLEEKIMEHYRKLDSCSSSSKKKSFGANLVRKVRKAGSELINKSRKSWHEDSLRKDRGTDSDTSLEDTLEWKVTTRRG

ccccccccHHHHHHHcccHHHHHHHHccccccccHHHHHccHHHHHHHHHHHcccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHccc

cccccccHHHHHHHHcccHEEEHHHccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHEEEccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHccHHHHHHHccccccccccccccccccccccccccHHHcccccc

MSSNMATSTEIEEFLKGPLVTWLLSClsnpdrlsdyedladgiyIHEVyllidpepvhqsvvpslrnASVRIKNFNTIVKNIKSLYEEELCQIVLVLpdvliigrepeskqgLENMKLLLLLLLGcavqcpnkETFIERIKELPVESQHALVDCIKQVTENQDIVLSldncegvpteVMVSNVKALAKERDRYLQTWRLVeekrnpsignseCQHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALESEIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTnlsllsksnqcvdnqsvssvdlndlaspgsgdnslseQLTSSAQAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDEldskyqvdKNTLSVLQNDLVNEKLKTTHLKNSLDklglamddqTDAENILEKILSSPEILNAVKKKLGvehfndesslnnaKLEVDLKTSQSQISSLTSQHTALQLANSQLILANHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEehkgnhmekrKLTLSLTELEGELANRDDAISALSVQLSKYQNKLEDDRRKLMEHVTNLLAQYHELLThsledkdhyheeEKNFSDKLNNLHRQKEKLEEKIMEHYRkldscsssskkksfgANLVRKVRKAGSELINKSRKSwhedslrkdrgtdsdtsledtlewkvttrrg

MSSNMATSTEIEEFLKGPLVTWLLSCLSNPDRLSDYEDLADGIYIHEVYLLIDPEPVHQSVVPSlrnasvrikNFNTIVKNIKSLYEEELCQIVLVLPDVLIIGREPESKQGLENMKLLLLLLLGCAVQCPNKETFIERIKELPVESQHALVDCIKQVTENQDIVLsldncegvptEVMVSNVKALAKERDRYLQTWRLVEekrnpsignsecQHLAVELADLKSKLRKQRLELeeksehltesrdeleHHKALINRMKAEMLELRAEArsgkaleseIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTieslhenafyesGERILELEKEKKKLslqvedleetkrrlsaqcteyeskftklETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKqlsnnteeINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQTDAENILEKILSSPEILNAVKKKLGVEHFNDESSLNNAKLEVDLKTSQSQISSLTSQHTALQLANSQLILANHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLKStlrdvknenktvkeqySQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALqeehkgnhmekrkLTLSLTELEGELANRDDAISALSVQLSKYQNKLEDDRRKLMEHVTNLLAQYHELLTHSLEDKDHYHEEEknfsdklnnlHRQKEKLEEKIMEHYrkldscsssskkksfganlvrkVRKAgselinksrkswhedslrkdrgtdsdtsledtlewkvttrrg

MSSNMATSTEIEEFLKGPLVTWLLSCLSNPDRLSDYEDLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNIKSLYEEELCQIVLVLPDVLIIGREPESKQGLENMKlllllllGCAVQCPNKETFIERIKELPVESQHALVDCIKQVTENQDIVLSLDNCEGVPTEVMVSNVKALAKERDRYLQTWRLVEEKRNPSIGNSECQHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALESEIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESLHENAFYESGERIlelekekkklSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQTDAENILEKILSSPEILNAVKKKLGVEHFNDESSLNNAKLEVDLKtsqsqissltsqhtALQLANSQLILANHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKltlsltelegelANRDDAISALSVQLSKYQNKLEDDRRKLMEHVTNLLAQYHELLTHSLEDKDHYHEEEKNFSDKLNNLHRQKEKLEEKIMEHYRKLDscsssskkksFGANLVRKVRKAGSELINKSRKSWHEDSLRKDRGTDSDTSLEDTLEWKVTTRRG

***********EEFLKGPLVTWLLSCLSNPDRLSDYEDLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNIKSLYEEELCQIVLVLPDVLIIGREPESKQGLENMKLLLLLLLGCAVQCPNKETFIERIKELPVESQHALVDCIKQVTENQDIVLSLDNCEGVPTEVMVSNVKALAKERDRYLQTWRLVE*************HLAV*******************************************************************LTDLEYYK********************************************************************************************L*TIESLHENAFY****************************************FTKLETEIRKINESYQNLELQI************************************************************************************************************************LSVLQNDLVNEKLK**********LGL*********NILEKILSSPEILNAVKKKLGV***********************************QLANSQLILANHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLKSTL**************************************************DFRILFTANEKLK**********************************************************LMEHVTNLLAQYHELLTH*********************************************************************************************************

***********EEFLKGPLVTWLLSCLSNPDRLSDYEDLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNIKSLYEEELCQIVLVLPDVLIIGR***********KLLLLLLLGCAV********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************

**********IEEFLKGPLVTWLLSCLSNPDRLSDYEDLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNIKSLYEEELCQIVLVLPDVLIIGREPESKQGLENMKLLLLLLLGCAVQCPNKETFIERIKELPVESQHALVDCIKQVTENQDIVLSLDNCEGVPTEVMVSNVKALAKERDRYLQTWRLVEEKRNPSIGNSECQHLAVELADLKSKLRKQRLELE************LEHHKALINRMKAEMLELRAEARSGKALESEIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLSLLSKSNQCVDNQSVSSVDLNDLAS**************SAQAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQTDAENILEKILSSPEILNAVKKKLGVEHFNDESSLNNAKLEVD**************HTALQLANSQLILANHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNKLEDDRRKLMEHVTNLLAQYHELLTHSLEDKDHYHEEEKNFSDKLNNLHRQKEKLEEKIMEH*****************ANLVRKVRKAGSELINKS**********************DTLEWKVTTRRG

****MATSTEIEEFLKGPLVTWLLSCLSNPDRLSDYEDLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNIKSLYEEELCQIVLVLPDVLIIGREPESKQGLENMKLLLLLLLGCAVQCPNKETFIERIKELPVESQHALVDCIKQVTENQDIVLSLDNCEGVPTEVMVSNVKALAKERDRYLQTWRLVEEKRN***GNSECQHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALESEIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENTNLSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQTDAENILEKILSSPEILNAVKKKLGVEHFNDESSLNNAKLEVDLKTSQSQISSLTSQHTALQLANSQLILANHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKYQNKLEDDRRKLMEHVTNLLAQYHELLTHSLEDKDHYHEEEKNFSDKLNNLHRQKEKLEEKIMEHYRKLDSCSSSSKKKSFGANLVRKVRKAGSE***************************************

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MSSNMATSTEIEEFLKGPLVTWLLSCLSNPDRLSDYEDLADGIYIHEVYLLIDPEPVHQSVVPSLRNASVRIKNFNTIVKNIKSLYEEELCQIVLVLPDVLIIGREPESKQGLENMKLLLLLLLGCAVQCPNKETFIERIKELPVESQHALVDCIKQVTENQDIVLSLDNCEGVPTEVMVSNVKALAKERDRYLQTWRLVEEKRNPSIGNSExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxARSGKALESEIQRYKDKLTDLEYYKSRVEELRQDNRAxxxxxxxxxxxxxxxxxxxxxNTNLSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTSSAQAKxxxxxxxxxxxxxxxxxxxxxAFYESGERxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQTDAENILEKILSSPEILNAVKKKLGVEHFNDESSLNxxxxxxxxxxxxxxxxxxxxxHTALQLANSQLILANHNELLQDQMTMTKLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxYHELLTHSLEDKDHYHEExxxxxxxxxxxxxxxxxxxxxxxxxxxxLDSCSSSSKKKSFGANLVRKVRKAGSELINKSRKSWHEDSLRKDRGTDSDTSLEDTLEWKVTTRRG

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		964	2.2.26 [Sep-21-2011]
Q9P219		2028	Protein Daple OS=Homo sap	yes	N/A	0.605	0.287	0.308	3e-60
Q5SNZ0		1873	Girdin OS=Mus musculus GN	yes	N/A	0.755	0.388	0.300	4e-60
Q6VGS5		2009	Protein Daple OS=Mus musc	no	N/A	0.715	0.343	0.289	1e-59
Q3V6T2		1871	Girdin OS=Homo sapiens GN	no	N/A	0.753	0.388	0.301	1e-59
P85120		2058	Daple-like protein OS=Xen	N/A	N/A	0.590	0.276	0.292	1e-49
A6NC98		1476	Coiled-coil domain-contai	no	N/A	0.297	0.194	0.301	3e-21
Q4QRL3		1481	Coiled-coil domain-contai	no	N/A	0.300	0.195	0.282	1e-19
B6MFW3		723	Protein Hook homolog OS=B	no	N/A	0.139	0.185	0.304	4e-10
Q6NRB0		721	Protein Hook homolog 2 OS	N/A	N/A	0.139	0.185	0.277	7e-09
Q86VS8		718	Protein Hook homolog 3 OS	no	N/A	0.308	0.413	0.248	2e-07

>sp\|Q9P219\|DAPLE_HUMAN Protein Daple OS=Homo sapiens GN=CCDC88C PE=1 SV=3	Back alignment and function desciption

 Score =  234 bits (596), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 223/723 (30%), Positives = 365/723 (50%), Gaps = 139/723 (19%)

Query: 11  IEEFLKGPLVTWLLS----CLSNPDRLSDYEDLADGIYIHEVYLLIDPEPVHQSVVPSLR 66
           +E FL+ PLVTW+ +       + D L+ Y DL DGI+++++ L IDP P +Q +   + 
Sbjct: 9   LELFLQSPLVTWVKTFGPFGSGSQDNLTMYMDLVDGIFLNQIMLQIDPRPTNQRINKHVN 68

Query: 67  N-ASVRIKNFNTIVKNIKSLYEEELCQ-IVLVLPDVLIIGREPESKQGLENMKLLLLLLL 124
           N  ++RI+N   +V+NIK+ Y+E L Q IV+ LP+VL+IGR+P S + +E +K +LLL+L
Sbjct: 69  NDVNLRIQNLTILVRNIKTYYQEVLQQLIVMNLPNVLMIGRDPLSGKSMEEIKKVLLLVL 128

Query: 125 GCAVQCPNKETFIERIKELPVESQHALVDCIKQVTENQDIVLSLDNCE---GVPTEV--- 178
           GCAVQC  KE FIERIK+L +E+Q  +V  I++VT NQ+ V  L   E     P E+   
Sbjct: 129 GCAVQCERKEEFIERIKQLDIETQAGIVAHIQEVTHNQENVFDLQWLELPDVAPEELEAL 188

Query: 179 ---MVSNVKALAKERDR-------------YLQTWRLVEEKRNPSIGNS----------E 212
              MV +++ L  +RD              YLQ        ++ S  ++          +
Sbjct: 189 SRSMVLHLRRLIDQRDECTELIVDLTQERDYLQAQHPPSPIKSSSADSTPSPTSSLSSED 248

Query: 213 CQHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSG 272
            QHLAVELAD K++LR+ R ELE+K+E L ++R E++     + ++K E ++L A+ARS 
Sbjct: 249 KQHLAVELADTKARLRRVRQELEDKTEQLVDTRHEVDQLVLELQKVKQENIQLAADARSA 308

Query: 273 KA-----------------LESEIQRYKDKLTDLEYYKSRVEELRQDN------------ 303
           +A                 LE E+ R K+KL D+++YK+R+EELR+DN            
Sbjct: 309 RAYRDELDSLREKANRVERLELELTRCKEKLHDVDFYKARMEELREDNIILIETKAMLEE 368

Query: 304 -----RA------------------INEIALERDANAEKLQQLIEENTNLSLLSKSNQCV 340
                RA                  ++++ L+RD + +++++L+EEN  L +  K +   
Sbjct: 369 QLTAARARGDKVHELEKENLQLKSKLHDLELDRDTDKKRIEELLEENMVLEIAQKQSM-- 426

Query: 341 DNQSV----------SSVDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIE 390
            N+S            + DL+D     +   S   +L   A ++ L+LE EN+ L STI+
Sbjct: 427 -NESAHLGWELEQLSKNADLSD-----ASRKSFVFELNECASSRILKLEKENQSLQSTIQ 480

Query: 391 SLHENAFY--ESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRK 448
            L + +    ESG +  ELEKE  +LS ++E L+    R      + E+   +L  E  +
Sbjct: 481 GLRDASLVLEESGLKCGELEKENHQLSKKIEKLQTQLEREKQSNQDLETLSEELIREKEQ 540

Query: 449 INESYQNLEL----QIQVRNDELDNMNREKQKL--------EWKNKELELNMEINKQLSN 496
           +    + L+     QI+    E D++NR    L        E + K++E   + NK L  
Sbjct: 541 LQSDMETLKADKARQIKDLEQEKDHLNRAMWSLRERSQVSSEARMKDVE---KENKALHQ 597

Query: 497 NTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENE 556
              E N   ++L   ++++ +  E  + K E  +KL  +L+ +++E+  L +++   E  
Sbjct: 598 TVTEANGKLSQLEFEKRQLHRDLEQAKEKGERAEKLERELQRLQEENGRLARKVTSLETA 657

Query: 557 LKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDD-QTDA 615
            +K   L+ E   L  + +  + +L  LQN              SL   GL  D+ Q DA
Sbjct: 658 TEKVEALEHESQGLQLENRTLRKSLDTLQN-------------VSLQLEGLERDNKQLDA 704

Query: 616 ENI 618
           EN+
Sbjct: 705 ENL 707

Negative regulator of the canonical Wnt signaling pathway, acting downstream of DVL to inhibit CTNNB1/Beta-catenin stabilization.
Homo sapiens (taxid: 9606)

>sp\|Q5SNZ0\|GRDN_MOUSE Girdin OS=Mus musculus GN=Ccdc88a PE=1 SV=2	Back alignment and function description

>sp\|Q6VGS5\|DAPLE_MOUSE Protein Daple OS=Mus musculus GN=Ccdc88c PE=1 SV=1	Back alignment and function description

>sp\|Q3V6T2\|GRDN_HUMAN Girdin OS=Homo sapiens GN=CCDC88A PE=1 SV=2	Back alignment and function description

>sp\|P85120\|DAPLE_XENLA Daple-like protein OS=Xenopus laevis GN=ccdc88c PE=1 SV=1	Back alignment and function description

>sp\|A6NC98\|CC88B_HUMAN Coiled-coil domain-containing protein 88B OS=Homo sapiens GN=CCDC88B PE=1 SV=1	Back alignment and function description

>sp\|Q4QRL3\|CC88B_MOUSE Coiled-coil domain-containing protein 88B OS=Mus musculus GN=Ccdc88b PE=1 SV=2	Back alignment and function description

>sp\|B6MFW3\|HOOK_BRAFL Protein Hook homolog OS=Branchiostoma floridae GN=BRAFLDRAFT_281537 PE=3 SV=1	Back alignment and function description

>sp\|Q6NRB0\|HOOK2_XENLA Protein Hook homolog 2 OS=Xenopus laevis GN=hook2 PE=2 SV=1	Back alignment and function description

>sp\|Q86VS8\|HOOK3_HUMAN Protein Hook homolog 3 OS=Homo sapiens GN=HOOK3 PE=1 SV=2	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		964
242015246		1243	conserved hypothetical protein [Pediculu	0.977	0.757	0.442	0.0
307178495		1251	Girdin [Camponotus floridanus]	0.970	0.748	0.423	0.0
340717953		1253	PREDICTED: protein Daple-like [Bombus te	0.975	0.750	0.414	0.0
328718253		1102	PREDICTED: girdin-like [Acyrthosiphon pi	0.947	0.828	0.454	0.0
307195980		1261	Girdin [Harpegnathos saltator]	0.974	0.744	0.413	0.0
350400537		1244	PREDICTED: protein Daple-like [Bombus im	0.975	0.755	0.416	0.0
332027969		1256	Protein Daple [Acromyrmex echinatior]	0.973	0.746	0.418	0.0
328781512		1212	PREDICTED: protein Daple-like, partial [	0.975	0.775	0.421	0.0
322791748		1263	hypothetical protein SINV_02886 [Solenop	0.973	0.742	0.411	0.0
383860271		1250	PREDICTED: protein Daple-like [Megachile	0.974	0.751	0.418	0.0

>gi\|242015246\|ref\|XP_002428278.1\| conserved hypothetical protein [Pediculus humanus corporis] gi\|212512856\|gb\|EEB15540.1\| conserved hypothetical protein [Pediculus humanus corporis]	Back alignment and taxonomy information

 Score =  766 bits (1977), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/1113 (44%), Positives = 683/1113 (61%), Gaps = 171/1113 (15%)

Query: 5    MATSTE-IEEFLKGPLVTWLLSCLSNPDRLSDYEDLADGIYIHEVYLLIDPEPVHQSVVP 63
            MAT+ E  +EF+ GPLV WL SCL NP  L DYEDL DG+ I++V L IDPEP    VVP
Sbjct: 1    MATNIEEKDEFMDGPLVIWLRSCLENPSGLVDYEDLLDGVLIYQVLLQIDPEPTFTGVVP 60

Query: 64   SLRNASVRIKNFNTIVKNIKSLYEEELCQIVLVLPDVLIIGREPESKQGLENMKLLLLLL 123
            SL N+   I+N + I+KNI+ LY+EE  Q V+++PDV+ +G EP +  G ++M LLLLLL
Sbjct: 61   SLGNSQAIIRNLDIILKNIQYLYQEEFGQTVIMIPDVVRLGTEPNTPAGRQDMALLLLLL 120

Query: 124  LGCAVQCPNKETFIERIKELPVESQHALVDCIKQVTENQDIVLSLDNCEGVPTEVMVSNV 183
            L CAVQCPNK+ FI++IK L V+ QH++VDCIK+VT+   +V+  DN + +  ++++ +V
Sbjct: 121  LSCAVQCPNKKIFIDKIKLLDVDVQHSIVDCIKKVTDTPLMVIGNDNQDSISHDILMDHV 180

Query: 184  KALAKERDRYLQTW--------RLV-EEKRNPSIGN--SECQHLAVELADLKSKLRKQRL 232
            + L KERDRYLQ W        RL   EK+N  I N  SE  HLAVELAD KSKLRKQR 
Sbjct: 181  RHLVKERDRYLQNWITSATCETRLSNSEKKNKQISNVSSESHHLAVELADWKSKLRKQRQ 240

Query: 233  ELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKA-----------------L 275
            ELEEK+E LTE ++ELEHH+A++ +++ E+ ++  EARS KA                 L
Sbjct: 241  ELEEKTEALTECKEELEHHRAMVTKLRQEVADVVQEARSAKAYRDELDAMREKAEKAEKL 300

Query: 276  ESEIQRYKDKLTDLEYYKSRVEELRQDNRA------------------------------ 305
            E+E+QR+KDKL+D+++YK+RV+ELR+DNR                               
Sbjct: 301  ENEVQRFKDKLSDIDFYKTRVQELREDNRVLLETREMLEDQLQRARRRSDHVFDLEGEIL 360

Query: 306  -----INEIALERDANAEKLQQLIEENTNLSLLSKSNQCVDNQSVSSVDLNDLASP-GSG 359
                 INE+ LERDA  +KL++L  EN  L +L++S   + ++SV   D +DL  P  SG
Sbjct: 361  KLNQQINELTLERDAKDKKLEKLYAENAELQILARS--VLHDESVVKSD-SDLEEPVSSG 417

Query: 360  DNSLSEQLTSSAQAKALRLELENKRLLSTIESLHENAFYESGERILELEKEKKKLSLQVE 419
            D S SEQLTS+A A+ALRLELEN++LLSTIE+L E +F+ES  +ILEL+KE KKLS+ +E
Sbjct: 418  DASWSEQLTSNATARALRLELENRKLLSTIENLKETSFHESSNKILELDKENKKLSINIE 477

Query: 420  DLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNREKQKLEW 479
             LE+T +RL+++  E E        E RK+ E+ + L   I  +  EL   +  KQ +  
Sbjct: 478  QLEDTCKRLTSENKELELIVKDSLQENRKLQEAKEGLRQTIDRQQQEL--QDGRKQIVSL 535

Query: 480  KN------KELELNMEINKQLSNNTEEINEYKTK-----------------LANCEKE-- 514
            KN      K++E+       L  ++ EI  +KT+                 L N EKE  
Sbjct: 536  KNEIDEYVKKVEVLTNKITDLEGSSTEIELWKTQSVLVPCLQEELASMKNDLLNLEKELQ 595

Query: 515  -----IKKCKEALESKAESLDKLTNKLESMEKEHVSLTKQIEDQENELKKYNDLKREMDE 569
                 + + KE +E K   LD   NK E+  KE     K++E+ + +  + ++++RE DE
Sbjct: 596  ISQRDVNRFKETIEEKDVKLDDFVNKAEAHVKEREQFIKELENAKWQTTRLHEVERERDE 655

Query: 570  LDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNSLDKLGLAMDDQTDAENILEKILSSPEIL 629
            L SK  + + TL+VL+ +LV+EK+   HLKN L+KLGL  +   D E+ +  +L+ PE+ 
Sbjct: 656  LVSKAAITEETLNVLKAELVSEKVNNQHLKNGLEKLGLKPELLFDTESTVANLLTIPELK 715

Query: 630  NAVKKKLGV----------------EHFN--------------------DESSLNNAKLE 653
            + + K++ +                E F+                    D    +NA LE
Sbjct: 716  DLLTKEIRLSCPKCKDGNKTEMNFDEDFDEGKGQKDELKNELAALQSAADAMQSDNAHLE 775

Query: 654  VDLKTSQSQISSLTSQHTALQLANSQLIL---------AN----HNELLQDQMTMTKLHE 700
            V + T QSQI+SLT+QHTALQLANSQL+          AN    +N+LL+DQ+ +  LHE
Sbjct: 776  VVMATLQSQITSLTAQHTALQLANSQLVAEKEELAKKGANQQDSYNQLLKDQIALQSLHE 835

Query: 701  QLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSN 760
            QL+ E+E+++KE + L+   +D+  ENK++K+  ++ +    S + E + L  +S SL+N
Sbjct: 836  QLSSEHENLLKEKENLRQVQKDLLKENKSLKDVVAKQEAINSSTKQEKDALVADSISLTN 895

Query: 761  LRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDA 820
            LRAEHSKLKDDFR LFTANEK+K ++RA+QEE+K    E   L L  TEL+GE A   D 
Sbjct: 896  LRAEHSKLKDDFRNLFTANEKVKTEYRAIQEEYKNLRGEASNLRLRHTELQGETATLSDH 955

Query: 821  ISALSVQLSKYQNK----------LEDDRRKLMEHVTNLLAQYHELLTHSLEDKDHYHEE 870
             + L VQLSK  N+          LE+DRR LM+H + LL+QYHELLTHSLEDK HYH E
Sbjct: 956  ATHLQVQLSKVANQNEMLLQMNSNLEEDRRSLMKHASMLLSQYHELLTHSLEDKQHYHAE 1015

Query: 871  EKNFSDKLNNLHRQKEKLEEKIMEHYRKLDSCSSSSKKKSFGANLVRKVRKAGSELINKS 930
            EK FSDKLN+L RQKEKLEEKIM+HY+KL+SC  ++KKK FGA+LVR+VRKAG++LIN S
Sbjct: 1016 EKIFSDKLNHLSRQKEKLEEKIMDHYKKLESC--TNKKKGFGASLVRRVRKAGTDLINMS 1073

Query: 931  RKSWHEDSL----------RKDRGTDSDTSLED 953
            RKSWHEDS            +  G +SD S++D
Sbjct: 1074 RKSWHEDSRPPSSTLLLQESESGGNESDGSVDD 1106

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|307178495\|gb\|EFN67184.1\| Girdin [Camponotus floridanus]	Back alignment and taxonomy information

>gi\|340717953\|ref\|XP_003397438.1\| PREDICTED: protein Daple-like [Bombus terrestris]	Back alignment and taxonomy information

>gi\|328718253\|ref\|XP_001947752.2\| PREDICTED: girdin-like [Acyrthosiphon pisum]	Back alignment and taxonomy information

>gi\|307195980\|gb\|EFN77725.1\| Girdin [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|350400537\|ref\|XP_003485868.1\| PREDICTED: protein Daple-like [Bombus impatiens]	Back alignment and taxonomy information

>gi\|332027969\|gb\|EGI68020.1\| Protein Daple [Acromyrmex echinatior]	Back alignment and taxonomy information

>gi\|328781512\|ref\|XP_397453.4\| PREDICTED: protein Daple-like, partial [Apis mellifera]	Back alignment and taxonomy information

>gi\|322791748\|gb\|EFZ16007.1\| hypothetical protein SINV_02886 [Solenopsis invicta]	Back alignment and taxonomy information

>gi\|383860271\|ref\|XP_003705614.1\| PREDICTED: protein Daple-like [Megachile rotundata]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		964
FB\|FBgn0035411		1381	Girdin "Girdin" [Drosophila me	0.799	0.558	0.271	8.2e-57
UNIPROTKB\|F1PMI5		2013	CCDC88C "Uncharacterized prote	0.933	0.447	0.251	3.1e-49
RGD\|1307429		2014	Ccdc88c "coiled-coil domain co	0.954	0.456	0.245	2.3e-47
UNIPROTKB\|E1BCQ3		2028	CCDC88C "Uncharacterized prote	0.941	0.447	0.256	8.1e-47
MGI\|MGI:1915589		2009	Ccdc88c "coiled-coil domain co	0.954	0.457	0.241	1e-45
MGI\|MGI:1925177		1873	Ccdc88a "coiled coil domain co	0.937	0.482	0.233	1.9e-45
UNIPROTKB\|F1SD91		2005	CCDC88C "Uncharacterized prote	0.939	0.451	0.252	2.7e-45
UNIPROTKB\|Q9P219		2028	CCDC88C "Protein Daple" [Homo	0.896	0.426	0.248	4.6e-45
UNIPROTKB\|E1C294		2028	Gga.55054 "Uncharacterized pro	0.875	0.416	0.244	5.9e-45
UNIPROTKB\|Q3V6T2		1871	CCDC88A "Girdin" [Homo sapiens	0.934	0.481	0.238	6.7e-45

FB\|FBgn0035411 Girdin "Girdin" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 614 (221.2 bits), Expect = 8.2e-57, P = 8.2e-57
 Identities = 230/846 (27%), Positives = 394/846 (46%)

Query:   137 IERIKE---LPVESQHALVDCIKQVTENQDIVLSLDNCEGVPTEVMVSNVKALAKERDRY 193
             +E ++E   + +ES+  L + +++  +  +  +SL++ E +  +  ++++ AL ++ DR 
Sbjct:   348 VEELREDNRVLLESKEMLEEQLQRYRKRSEHAISLES-EIIKYKQKINDM-ALERDVDRS 405

Query:   194 LQTWRLVEEKRNPSIGNSECQHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKA 253
              +   L+EE       NS+ Q +A  L      L K   E E+       S  E   + A
Sbjct:   406 -KLEELLEE-------NSQLQLVARNLNSTMD-LDKSFSENEDDCNSGDNSLSEQLTNNA 456

Query:   254 LINRMKAEMLELRAEARSGKALESEIQRYKDKLTDLEYYKSRVE-ELRQDNRAINEIALE 312
                 +K E+   R  A   +  ES       K+ +LE  K ++  ++ Q    IN +  +
Sbjct:   457 QTRALKLELENRRLTAALEQLKESSFHESTSKMLELEKEKKKLSLKIEQMQENINRLT-Q 515

Query:   313 RDANAEKL-QQLIEENTNLSLLSKSNQCVDNQSVSSVDLNDLASPGSGDN-SLSEQLTSS 370
             ++   E + +  +EEN  L         VDN+   S D   L         S +EQ   +
Sbjct:   516 QNVELEGVFKNALEENKKLQ------DAVDNRQ-KSYDRQSLEREADRQKLSDAEQHVET 568

Query:   371 AQAKALRLELENKRLLSTIESLHENAFYESGERIXXXXXXXXXXSLQVEDLEETKRRLSA 430
                +  R++  N+ +    + L   A  ++ E +           L  + L E + R+S 
Sbjct:   569 LNKEKQRIQTLNESIQRRADDLERLAESKTKE-LEQYLEKSRQYELTKQKLYEIEARVST 627

Query:   431 QCTEYES---KFTKLETEIRKINESYQNLELQIQVRNDELDNMNR---EKQKLEWKNKEL 484
                E  S   + +KL+    + +    +   ++ V++ EL  + +   + +++  K  EL
Sbjct:   628 YERENASLLKEVSKLKEGSEQKSVQLDDSINRLDVQSKELQKLGKALEDSEQVHQKLVEL 687

Query:   485 EL-NMEINKQLSNNTEEINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEH 543
             E  N E+  Q   + E I+  +  L       KK +  LE K    D+   +L     EH
Sbjct:   688 EKQNQELASQRIIDQEMISTLRNDLVTGTLVTKKVRNNLE-KLGLADEEPGELNV---EH 743

Query:   544 V--SLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLVNEKLKTTHLKNS 601
             V   L +  E  +   +   ++ RE  E + +    K+ + VL +    +++ T      
Sbjct:   744 VVEKLVRNPETFKTVREIMLNVTREQLEEEEREGGVKSDMCVLCH---RQEIFTVEKNIE 800

Query:   602 LDKLGLAMDDQTDAENIL--EKILSSPEILNAVKKKLGVEHFNDESSLNNAKLEVDLKXX 659
             L         Q  ++ +    K+  SP   +A   +  ++  N +    NA+L VD+   
Sbjct:   801 LAATPAPAPAQPSSQELRFEHKVRLSPARESAELTR--IKDSNTQLQTENARLSVDVAAL 858

Query:   660 XXXXXXXXXXXXALQLANSQL-------------ILANHNELLQDQMTMTKLHEQLNMEY 706
                         ALQLANSQL             +   H   LQDQ+T+  LH+QL+ EY
Sbjct:   859 GSQITSLNTQHVALQLANSQLAAEKDSLLKEIDSLQQEHKHALQDQVTLQCLHDQLSAEY 918

Query:   707 ESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQLKFESHSLSNLRAEHS 766
             ES+ K+ + LK+ +RD++ E +  +EQ S L+   E L  +   +K  S  LS LR EHS
Sbjct:   919 ESLNKDKEQLKAAVRDLRQELRDTREQQSALEQRIEELTIQNSNMKTCSEDLSILRTEHS 978

Query:   767 KLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKXXXXXXXXXXXXANRDDAISALSV 826
             KL DDFR LF  +++ K +++ +QE++K   ME                 + D +  L +
Sbjct:   979 KLTDDFRNLFATSDRFKNEYKNIQEQYKMVRMEHSSLKLQNTELSGELNAKSDQVRCLQM 1038

Query:   827 QLSKYQNK----------LEDDRRKLMEHVTNLLAQYHELLTHSLEDKDHYHEEEKNFSD 876
             + SK Q +          L+ +R+ LM++V+ LL+QY ELL  SLEDK H+HEEEKN+++
Sbjct:  1039 EYSKVQQRCEMLIQNNAELDSERKALMDNVSQLLSQYQELLAISLEDKKHFHEEEKNYTE 1098

Query:   877 KLNNLHRQKEKLEEKIMEHYRKLDXXXXXXXXXXFGANLVRKVRKAGSELINK----SRK 932
             ++++L RQKEKLEEKIMEHY+K +          F + LVR+V+KA S+L+NK    +R+
Sbjct:  1099 RVHSLKRQKEKLEEKIMEHYKKSETTVHKKKP--FASMLVRRVKKASSDLMNKVPSRNRR 1156

Query:   933 SWHEDS 938
             SW +D+
Sbjct:  1157 SWVDDA 1162

GO:0005737 "cytoplasm" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0000226 "microtubule cytoskeleton organization" evidence=IEA

GO:0045793 "positive regulation of cell size" evidence=IMP

GO:0007015 "actin filament organization" evidence=IMP

UNIPROTKB\|F1PMI5 CCDC88C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

RGD\|1307429 Ccdc88c "coiled-coil domain containing 88C" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|E1BCQ3 CCDC88C "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

MGI\|MGI:1915589 Ccdc88c "coiled-coil domain containing 88C" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

MGI\|MGI:1925177 Ccdc88a "coiled coil domain containing 88A" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SD91 CCDC88C "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9P219 CCDC88C "Protein Daple" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C294 Gga.55054 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|Q3V6T2 CCDC88A "Girdin" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		964
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-12
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-12
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	4e-11
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-11
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	9e-11
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	9e-11
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	3e-10
pfam05622		713	pfam05622, HOOK, HOOK protein	3e-10
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	7e-10
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-09
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-09
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	6e-09
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-09
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-08
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	4e-08
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-08
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-07
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-07
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-07
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-07
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-07
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	4e-07
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	5e-07
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-07
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-06
PRK02224		880	PRK02224, PRK02224, chromosome segregation protein	3e-06
pfam13166		713	pfam13166, AAA_13, AAA domain	3e-06
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-06
pfam12128		1198	pfam12128, DUF3584, Protein of unknown function (D	6e-06
PRK12704		520	PRK12704, PRK12704, phosphodiesterase; Provisional	9e-06
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-05
COG0419		908	COG0419, SbcC, ATPase involved in DNA repair [DNA	2e-05
pfam02463		1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	2e-05
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	3e-05
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-05
pfam09726		680	pfam09726, Macoilin, Transmembrane protein	9e-05
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	1e-04
pfam13166		713	pfam13166, AAA_13, AAA domain	1e-04
COG1196		1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-04
pfam02463		1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	2e-04
TIGR04211		198	TIGR04211, SH3_and_anchor, SH3 domain protein	2e-04
PRK05771		646	PRK05771, PRK05771, V-type ATP synthase subunit I;	2e-04
PRK03918		880	PRK03918, PRK03918, chromosome segregation protein	3e-04
PRK01156		895	PRK01156, PRK01156, chromosome segregation protein	3e-04
pfam13166		713	pfam13166, AAA_13, AAA domain	5e-04
TIGR02168		1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-04
TIGR03319		514	TIGR03319, RNase_Y, ribonuclease Y	8e-04
PRK04863		1486	PRK04863, mukB, cell division protein MukB; Provis	0.001
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.002
pfam12128		1198	pfam12128, DUF3584, Protein of unknown function (D	0.002
pfam02463		1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	0.002
PHA02562		562	PHA02562, 46, endonuclease subunit; Provisional	0.002
TIGR01843		423	TIGR01843, type_I_hlyD, type I secretion membrane	0.002
COG2433		652	COG2433, COG2433, Uncharacterized conserved protei	0.002
pfam04111		356	pfam04111, APG6, Autophagy protein Apg6	0.003
PRK05729		874	PRK05729, valS, valyl-tRNA synthetase; Reviewed	0.003
TIGR02169		1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.004
PRK01156		895	PRK01156, PRK01156, chromosome segregation protein	0.004
PHA02562		562	PHA02562, 46, endonuclease subunit; Provisional	0.004
COG2433		652	COG2433, COG2433, Uncharacterized conserved protei	0.004
COG4372		499	COG4372, COG4372, Uncharacterized protein conserve	0.004

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

 Score = 70.9 bits (174), Expect = 3e-12
 Identities = 79/380 (20%), Positives = 154/380 (40%), Gaps = 47/380 (12%)

Query: 210  NSECQHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAE- 268
              E + L  ++ +L+ K+ +    L E  + L E  +ELE  +  +  +  ++  LR + 
Sbjct: 676  RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL 735

Query: 269  ARSGKALESEIQRYKDKLTDLEYYKSRVEELRQDNRAINEIALERDANAEKLQQLIEENT 328
            AR    +E   +R      +L   ++ +EEL +      E   E +A  E+L+  IE+  
Sbjct: 736  ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ-- 793

Query: 329  NLSLLSKSNQCVDNQSVSSVDLNDLASPGSGDNSLSEQLTS---SAQAKALRLELENKRL 385
                                   +L +     + L  +LT     A     RLE   +R+
Sbjct: 794  --------------------LKEELKALREALDELRAELTLLNEEAANLRERLESLERRI 833

Query: 386  LSTIESLHENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETE 445
             +T   L +       E+I EL ++ + L+ ++E+LEE    L ++     ++   LE  
Sbjct: 834  AATERRLEDLE-----EQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEA 888

Query: 446  IRKINESYQNLELQIQVRNDELDNMNREKQKLEWKNKELELNME-INKQLSNNTEEINE- 503
            +  +    + L  +++    +   + RE ++L  K  +LEL +E +  ++ N  E ++E 
Sbjct: 889  LALLRSELEELSEELRELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEE 948

Query: 504  YKTKLANCEKEIKKCKEALESKAESLDKLTNKLESM--------------EKEHVSLTKQ 549
            Y   L   E    K ++  E     L +L NK++ +              ++ +  LT Q
Sbjct: 949  YSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQ 1008

Query: 550  IEDQENELKKYNDLKREMDE 569
             ED     +   +   E+D 
Sbjct: 1009 KEDLTEAKETLEEAIEEIDR 1028

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|218661 pfam05622, HOOK, HOOK protein	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|221952 pfam13166, AAA_13, AAA domain	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)	Back alignment and domain information

>gnl\|CDD\|237177 PRK12704, PRK12704, phosphodiesterase; Provisional	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]	Back alignment and domain information

>gnl\|CDD\|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|220365 pfam09726, Macoilin, Transmembrane protein	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|221952 pfam13166, AAA_13, AAA domain	Back alignment and domain information

>gnl\|CDD\|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	Back alignment and domain information

>gnl\|CDD\|234501 TIGR04211, SH3_and_anchor, SH3 domain protein	Back alignment and domain information

>gnl\|CDD\|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated	Back alignment and domain information

>gnl\|CDD\|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|221952 pfam13166, AAA_13, AAA domain	Back alignment and domain information

>gnl\|CDD\|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>gnl\|CDD\|188306 TIGR03319, RNase_Y, ribonuclease Y	Back alignment and domain information

>gnl\|CDD\|235316 PRK04863, mukB, cell division protein MukB; Provisional	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584)	Back alignment and domain information

>gnl\|CDD\|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	Back alignment and domain information

>gnl\|CDD\|222878 PHA02562, 46, endonuclease subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family	Back alignment and domain information

>gnl\|CDD\|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>gnl\|CDD\|217902 pfam04111, APG6, Autophagy protein Apg6	Back alignment and domain information

>gnl\|CDD\|235582 PRK05729, valS, valyl-tRNA synthetase; Reviewed	Back alignment and domain information

>gnl\|CDD\|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>gnl\|CDD\|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional	Back alignment and domain information

>gnl\|CDD\|222878 PHA02562, 46, endonuclease subunit; Provisional	Back alignment and domain information

>gnl\|CDD\|225288 COG2433, COG2433, Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>gnl\|CDD\|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		964
KOG4643\|consensus		1195		100.0
PF05622		713	HOOK: HOOK protein; InterPro: IPR008636 This famil	100.0
KOG0161\|consensus		1930		99.94
KOG4643\|consensus		1195		99.94
KOG0161\|consensus		1930		99.93
PF01576		859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	99.86
PF01576		859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	99.72
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	99.63
KOG4674\|consensus		1822		99.58
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	99.57
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	99.52
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	99.51
PRK02224		880	chromosome segregation protein; Provisional	99.44
TIGR02168		1179	SMC_prok_B chromosome segregation protein SMC, com	99.35
PRK02224		880	chromosome segregation protein; Provisional	99.28
TIGR00606		1311	rad50 rad50. This family is based on the phylogeno	99.28
PRK03918		880	chromosome segregation protein; Provisional	99.16
KOG4674\|consensus		1822		99.16
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	99.13
PF10174		775	Cast: RIM-binding protein of the cytomatrix active	99.08
TIGR02169		1164	SMC_prok_A chromosome segregation protein SMC, pri	99.06
COG1196		1163	Smc Chromosome segregation ATPases [Cell division	98.98
KOG0933\|consensus		1174		98.94
PRK03918		880	chromosome segregation protein; Provisional	98.62
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	98.31
PRK04863		1486	mukB cell division protein MukB; Provisional	98.3
KOG0976\|consensus		1265		98.26
KOG0976\|consensus		1265		98.1
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	98.05
PF00038		312	Filament: Intermediate filament protein; InterPro:	98.03
PF12128		1201	DUF3584: Protein of unknown function (DUF3584); In	98.03
PF07888		546	CALCOCO1: Calcium binding and coiled-coil domain (	97.99
KOG0971\|consensus		1243		97.99
KOG0996\|consensus		1293		97.97
KOG0977\|consensus		546		97.96
PF09730		717	BicD: Microtubule-associated protein Bicaudal-D; I	97.91
PF14662		193	CCDC155: Coiled-coil region of CCDC155	97.9
PRK01156		895	chromosome segregation protein; Provisional	97.81
KOG0962\|consensus		1294		97.77
KOG0977\|consensus		546		97.71
PF05557		722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.68
PF15070		617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.68
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.65
PF00038		312	Filament: Intermediate filament protein; InterPro:	97.51
PF05557		722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	97.44
KOG0933\|consensus		1174		97.39
PF15070		617	GOLGA2L5: Putative golgin subfamily A member 2-lik	97.37
PF14662		193	CCDC155: Coiled-coil region of CCDC155	97.32
KOG0996\|consensus		1293		97.31
PRK04778		569	septation ring formation regulator EzrA; Provision	97.15
PF05622		713	HOOK: HOOK protein; InterPro: IPR008636 This famil	97.15
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	97.1
PF05483		786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	97.06
PHA02562		562	46 endonuclease subunit; Provisional	97.01
PF00261		237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	96.99
PRK04778		569	septation ring formation regulator EzrA; Provision	96.94
KOG0971\|consensus		1243		96.92
KOG0964\|consensus		1200		96.91
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.81
PF09726		697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.8
PF00307		108	CH: Calponin homology (CH) domain; InterPro: IPR00	96.79
PF10473		140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	96.73
KOG0612\|consensus		1317		96.66
PF09755		310	DUF2046: Uncharacterized conserved protein H4 (DUF	96.66
KOG4673\|consensus		961		96.62
PRK11637		428	AmiB activator; Provisional	96.56
PF15066		527	CAGE1: Cancer-associated gene protein 1 family	96.55
PF05701		522	WEMBL: Weak chloroplast movement under blue light;	96.54
KOG4673\|consensus		961		96.45
PRK11637		428	AmiB activator; Provisional	96.27
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	96.19
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	96.13
PF09755		310	DUF2046: Uncharacterized conserved protein H4 (DUF	95.98
COG1579		239	Zn-ribbon protein, possibly nucleic acid-binding [	95.91
PRK01156		895	chromosome segregation protein; Provisional	95.89
PHA02562		562	46 endonuclease subunit; Provisional	95.87
PF05483		786	SCP-1: Synaptonemal complex protein 1 (SCP-1); Int	95.77
KOG0250\|consensus		1074		95.59
KOG0994\|consensus		1758		95.48
PF06294		158	DUF1042: Domain of Unknown Function (DUF1042); Int	95.4
KOG0995\|consensus		581		95.38
smart00033		103	CH Calponin homology domain. Actin binding domains	95.19
PRK09039		343	hypothetical protein; Validated	95.15
PF07926		132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	95.06
PF09730		717	BicD: Microtubule-associated protein Bicaudal-D; I	94.94
KOG4593\|consensus		716		94.94
PF07926		132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	94.88
PF12718		143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	94.81
PF10473		140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	94.7
cd00014		107	CH Calponin homology domain; actin-binding domain	94.7
KOG1029\|consensus		1118		94.58
PF13514		1111	AAA_27: AAA domain	94.53
PRK09039		343	hypothetical protein; Validated	94.46
PF06160		560	EzrA: Septation ring formation regulator, EzrA ; I	94.31
KOG0250\|consensus		1074		94.26
PF04849		306	HAP1_N: HAP1 N-terminal conserved region; InterPro	94.25
PF14915		305	CCDC144C: CCDC144C protein coiled-coil region	94.19
PF08317		325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	94.17
PF09789		319	DUF2353: Uncharacterized coiled-coil protein (DUF2	93.95
PF13851		201	GAS: Growth-arrest specific micro-tubule binding	93.91
PF07111		739	HCR: Alpha helical coiled-coil rod protein (HCR);	93.9
PF04849		306	HAP1_N: HAP1 N-terminal conserved region; InterPro	93.81
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	93.78
PF09728		309	Taxilin: Myosin-like coiled-coil protein; InterPro	93.75
PF14915		305	CCDC144C: CCDC144C protein coiled-coil region	93.53
KOG0980\|consensus		980		93.43
PRK04863		1486	mukB cell division protein MukB; Provisional	93.43
PF06785		401	UPF0242: Uncharacterised protein family (UPF0242);	93.42
PF12325		120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	93.25
PF15066		527	CAGE1: Cancer-associated gene protein 1 family	93.17
KOG0980\|consensus		980		93.16
PF12325		120	TMF_TATA_bd: TATA element modulatory factor 1 TATA	93.08
PF07111		739	HCR: Alpha helical coiled-coil rod protein (HCR);	93.04
COG4372		499	Uncharacterized protein conserved in bacteria with	93.01
smart00787		312	Spc7 Spc7 kinetochore protein. This domain is foun	92.82
KOG0978\|consensus		698		92.39
KOG0946\|consensus		970		92.27
KOG1853\|consensus		333		92.06
KOG0612\|consensus		1317		91.89
PF05667		594	DUF812: Protein of unknown function (DUF812); Inte	90.75
PF09789		319	DUF2353: Uncharacterized coiled-coil protein (DUF2	90.6
COG1340		294	Uncharacterized archaeal coiled-coil protein [Func	90.57
PF10481		307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	90.41
PF15254		861	CCDC14: Coiled-coil domain-containing protein 14	90.35
KOG0946\|consensus		970		90.1
PF10146		230	zf-C4H2: Zinc finger-containing protein ; InterPro	90.06
KOG0999\|consensus		772		90.03
PF08614		194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	90.0
KOG2129\|consensus		552		89.9
PF11559		151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	89.76
KOG0963\|consensus		629		89.58
PF05010		207	TACC: Transforming acidic coiled-coil-containing p	89.47
COG4942		420	Membrane-bound metallopeptidase [Cell division and	89.09
PF08581		79	Tup_N: Tup N-terminal; InterPro: IPR013890 The N-t	88.47
PF10481		307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	88.04
PF13851		201	GAS: Growth-arrest specific micro-tubule binding	88.0
COG4372		499	Uncharacterized protein conserved in bacteria with	87.63
KOG0995\|consensus		581		87.59
PF09787		511	Golgin_A5: Golgin subfamily A member 5; InterPro:	87.38
PF04111		314	APG6: Autophagy protein Apg6; InterPro: IPR007243	87.35
PF08614		194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	87.23
KOG0964\|consensus		1200		86.9
KOG1853\|consensus		333		86.82
PF15619		194	Lebercilin: Ciliary protein causing Leber congenit	86.79
KOG4593\|consensus		716		86.42
KOG0804\|consensus		493		86.08
PF00769		246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	85.72
KOG0963\|consensus		629		85.5
PF00769		246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	85.29
KOG1003\|consensus		205		83.9
KOG0994\|consensus		1758		83.78
PF11559		151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	83.14
PF04111		314	APG6: Autophagy protein Apg6; InterPro: IPR007243	82.85
PF06005		72	DUF904: Protein of unknown function (DUF904); Inte	82.77
KOG4360\|consensus		596		82.61
PRK10884		206	SH3 domain-containing protein; Provisional	82.48
PF11971		85	CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 T	82.41
PF15397		258	DUF4618: Domain of unknown function (DUF4618)	81.26
PF06160		560	EzrA: Septation ring formation regulator, EzrA ; I	81.12
TIGR01843		423	type_I_hlyD type I secretion membrane fusion prote	80.92
KOG1899\|consensus		861		80.68
PRK15422		79	septal ring assembly protein ZapB; Provisional	80.38

>KOG4643\|consensus	Back alignment and domain information

Probab=100.00  E-value=5.9e-49  Score=451.35  Aligned_cols=839  Identities=27%  Similarity=0.338  Sum_probs=603.2

Q ss_pred             hhHHHHHHHHHHHHHHHhhhhcccCCchhhhccCCCchhhHHHHHHHHHHHHHHhhcCCCchhhhHHhhcCCHHHHHHHH
Q psy3622          73 KNFNTIVKNIKSLYEEELCQIVLVLPDVLIIGREPESKQGLENMKLLLLLLLGCAVQCPNKETFIERIKELPVESQHALV  152 (964)
Q Consensus        73 ~Nl~~i~~~i~~yy~e~l~~~~~~~pd~~~i~~~~~s~~~~~el~~ll~l~lg~av~~~~~~~~I~~I~~L~~~~Q~~l~  152 (964)
                      .||..++++|+.||++.+||.|+.+||..+|+.+|.|..|...|..++.++|||||+||+++-||.+|+.++.++++++|
T Consensus         2 ~n~~~~vR~~ke~~ee~lgqli~~lpd~~~lg~~p~s~ng~e~ik~ll~llLg~avqcp~kelfi~riq~ldlete~a~~   81 (1195)
T KOG4643|consen    2 KNFECVVRNMKETDEEGLGQLIIELPDDDMLGSTPSSSNGEEAIKQLLQLLLGSAVQCPTKELFIQRIQILDLETEMAQM   81 (1195)
T ss_pred             ccHHHHHHHHHHHHHHhccceeEecCchhhhccCccccchHHHHHHHHHHHHHhhhcCCcHHHHHHHHHhhhhHHHHHHH
Confidence            59999999999999999999998999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhhccccccCcCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------------CC------
Q psy3622         153 DCIKQVTENQDIVLSLDNCEGVPTEVMVSNVKALAKERDRYLQTWRLVEEKRN-------------------PS------  207 (964)
Q Consensus       153 ~~Iq~v~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ErD~~~~~~~~l~~~~~-------------------~~------  207 (964)
                      ..|++|++....|++.+|.+...+..++.|++.++.+|+..+-.|.+..+..+                   ++      
T Consensus        82 ~~iaevtd~~~~vleld~~er~~~~q~~~hir~llk~r~~~~k~~id~~qe~se~i~e~~le~vGl~~~~~~s~s~~~~~  161 (1195)
T KOG4643|consen   82 RTIAEVTDEECQVLELDNEERAQKIQILEHIRLLLKDRKKKWKSVIDDLQEASEKIAEKLLELVGLEKKYRESRSGKELY  161 (1195)
T ss_pred             HHHHHhhhhHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeeccccCCCCC
Confidence            99999999999999999999888877889999999999987777766543310                   11      


Q ss_pred             C-----CChhhhhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622         208 I-----GNSECQHLAVELADLKSKLRKQRLELEEKSEHLTESRDELEHHKALINRMKAEMLELRAEARSGKALESEIQRY  282 (964)
Q Consensus       208 ~-----~~~~~~~l~~e~ad~k~klr~~~~eleek~~~L~~~~~el~~~~~~~~~l~~e~~~l~~~a~~~~~le~~~~~l  282 (964)
                      .     ......||.+++||+++|||++|+|++||.+.|.+++.+|+.++.+++++++++..+...|.++..|..++..+
T Consensus       162 ~sp~~~~~~~~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldal  241 (1195)
T KOG4643|consen  162 KSPYDIVVKKNLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDAL  241 (1195)
T ss_pred             CCcchhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHH
Confidence            1     13456799999999999999999999999999999999999999999999999999999999999988777765


Q ss_pred             -----------HHHHhhHHHHHHHHHHHHHHHHH----------------------------------HHHHHHHHHHHH
Q psy3622         283 -----------KDKLTDLEYYKSRVEELRQDNRA----------------------------------INEIALERDANA  317 (964)
Q Consensus       283 -----------k~kl~~l~~~k~~~~el~e~~~~----------------------------------l~~l~~E~d~~~  317 (964)
                                 |+++-|.+||+.++++++++|.+                                  +++|+.+++.++
T Consensus       242 re~aer~d~~ykerlmDs~fykdRveelkedN~vLleekeMLeeQLq~lrarse~~tleseiiqlkqkl~dm~~erdtdr  321 (1195)
T KOG4643|consen  242 REQAERPDTTYKERLMDSDFYKDRVEELKEDNRVLLEEKEMLEEQLQKLRARSEGATLESEIIQLKQKLDDMRSERDTDR  321 (1195)
T ss_pred             HHhhhcCCCccchhhhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHhhhhHH
Confidence                       55667889999999999999887                                  899999999999


Q ss_pred             HHHHHHHHHHHhHHHHhhhhcccccccccc-----cccccCCCCCCCCCchhHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy3622         318 EKLQQLIEENTNLSLLSKSNQCVDNQSVSS-----VDLNDLASPGSGDNSLSEQLTSSAQAKALRLELENKRLLSTIESL  392 (964)
Q Consensus       318 e~~eel~ee~~~Le~~~~~~~~~s~~~~~~-----~~~~~~~~~~~~~~sl~~~~~~~~~~r~~kLe~E~k~L~~~ie~l  392 (964)
                      .++++|.+||+.|+....+     ....|.     +.+.   +  ....|+..+....+++|+.+++-++.++-..++.+
T Consensus       322 ~kteeL~eEnstLq~q~eq-----L~~~~ellq~~se~~---E--~en~Sl~~e~eqLts~ralkllLEnrrlt~tleel  391 (1195)
T KOG4643|consen  322 HKTEELHEENSTLQVQKEQ-----LDGQMELLQIFSENE---E--LENESLQVENEQLTSDRALKLLLENRRLTGTLEEL  391 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHH-----hhhhhhHhhhhhcch---h--hhhhhHHHHHHHhhhHHHHHHHHHhHHHHHHHHHH
Confidence            9999999999999866433     223332     2221   1  12344555555666789999999999999999999


Q ss_pred             HhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622         393 HENAFYESGERILELEKEKKKLSLQVEDLEETKRRLSAQCTEYESKFTKLETEIRKINESYQNLELQIQVRNDELDNMNR  472 (964)
Q Consensus       393 ~~~~~~e~~~k~~~LEkek~~L~~eie~l~~~le~~~~~~~~lE~~~k~l~ee~~~lq~~~e~~~~~~~~le~~~~~l~~  472 (964)
                      +..++++...|...++++++.|+.+++.|...+....+..++++...+.+..|+.+++...++..+-...-+...    .
T Consensus       392 qsss~Ee~~SK~leleke~KnLs~k~e~Leeri~ql~qq~~eled~~K~L~~E~ekl~~e~~t~~~s~~rq~~e~----e  467 (1195)
T KOG4643|consen  392 QSSSYEELISKHLELEKEHKNLSKKHEILEERINQLLQQLAELEDLEKKLQFELEKLLEETSTVTRSLSRQSLEN----E  467 (1195)
T ss_pred             hhhhHHHHHHHHHHHHHHhHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHh----H
Confidence            999999999999999999999999999999999999999999999999999999999988876644332111111    1


Q ss_pred             HHHHHHHHHHHHHHhHHHHHHhHhhHH--------HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q psy3622         473 EKQKLEWKNKELELNMEINKQLSNNTE--------EINEYKTKLANCEKEIKKCKEALESKAESLDKLTNKLESMEKEHV  544 (964)
Q Consensus       473 e~~~l~~~~eelEr~~~~l~~el~~l~--------~~~~Le~~~~~LE~E~~~l~e~lee~e~~le~~e~~l~rle~e~~  544 (964)
                      +..++....+.+..+-..+...+..++        .+..+...+..+..+......+++.....++.++..+.-++.|+.
T Consensus       468 ~~~q~ls~~~Q~~~et~el~~~iknlnk~L~~r~~elsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa  547 (1195)
T KOG4643|consen  468 ELDQLLSLQDQLEAETEELLNQIKNLNKSLNNRDLELSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENA  547 (1195)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence            111122222222222222222222222        234444455555666666777777777788888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHhHhh-Hhhhh----hhH-------HHhHHHHhccccch-
Q psy3622         545 SLTKQIEDQENELKKYNDLKREMDELDSKYQVDKNTLSVLQNDLV-NEKLK----TTH-------LKNSLDKLGLAMDD-  611 (964)
Q Consensus       545 ~L~~~~e~~~~~~~~l~elE~e~~~L~~~~~~~~~tl~~Lq~~l~-~Ek~k----~~~-------L~~ele~L~~~~e~-  611 (964)
                      .|-++|..+..+......||..+.++.......++.++.|.+-.. .+++.    .|+       ++..++.|+...-. 
T Consensus       548 ~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~idaL~alrrhke~LE~e~mnQql~~d~~~~kr~ie~Lr~~~~kl  627 (1195)
T KOG4643|consen  548 HLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKYIDALNALRRHKEKLEEEIMNQQLFEDPIPLKRDIEWLRRKESKL  627 (1195)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCchhhhHHHHHHHHHhh
Confidence            888888888887777788888888877766667777777764211 11111    111       22223333222000 


Q ss_pred             ------h----------h--hHHHHHHHHhcCHHHHH----------------------------------HHH------
Q psy3622         612 ------Q----------T--DAENILEKILSSPEILN----------------------------------AVK------  633 (964)
Q Consensus       612 ------~----------~--~le~~l~ki~~~~~~l~----------------------------------~~~------  633 (964)
                            .          .  +.+...+++..++..++                                  .++      
T Consensus       628 l~~Kkdr~ree~kel~~ekl~ve~l~e~l~~lp~~fkt~n~e~l~V~sn~lEe~qr~~~~~sn~~~~l~q~~i~~~q~~~  707 (1195)
T KOG4643|consen  628 LKEKKDRNREETKELMDEKLQVEDLQEKLRELPLEFKTKNDEILMVGSNILEERQRLGGCKSNAEIDLLQVSIRNSQIQG  707 (1195)
T ss_pred             cchhHHHHHHHHhhccccchhHHHHHHHHHhCchhhccccchhhhhhhhhhhhhhhhccccccchHHHHHHHHhcccccc
Confidence                  0          0  00111111111111100                                  000      


Q ss_pred             ----------------H-Hh----ch---------hh--chhHhhHHhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Q psy3622         634 ----------------K-KL----GV---------EH--FNDESSLNNAKLEVDLKTSQSQISSLTSQHTALQLANSQLI  681 (964)
Q Consensus       634 ----------------e-~i----~~---------e~--~~~~Lq~~~~~Lq~e~~~L~sq~~sl~~q~~~Lq~~~~~le  681 (964)
                                      + .+    +.         ..  -...++..+..+.+....+.+|+-++...+ ..|....+..
T Consensus       708 ele~teapt~lq~~~qelel~sk~~sq~a~e~a~~nst~~~~~lq~~nnklt~d~d~l~~qs~el~~~~-~rq~asrq~a  786 (1195)
T KOG4643|consen  708 ELENTEAPTKLQDELQELELGSKKRSQNADELANMNSTLLVSRLQQLNNKLTRDYDELKKQSMELRQKV-ARQNASRQQA  786 (1195)
T ss_pred             hhhcCCCccccchhhHHHHhhHHHhccchhhhcccccchhhhhhhhhcccccccHHHhccccccccchH-HHhhccchhh
Confidence                            0 00    00         00  225677788888888888888888887777 5555554444


Q ss_pred             HH----------HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3622         682 LA----------NHNELLQDQMTMTKLHEQLNMEYESVVKEIKVLKSTLRDVKNENKTVKEQYSQLKVSYESLQAEMEQL  751 (964)
Q Consensus       682 ~e----------~~~~l~~~~~~L~~l~e~l~~E~E~l~~e~e~Lk~~~~~Le~e~r~l~~~~~~Le~~~~~L~~e~~~L  751 (964)
                      .+          .+..+..+..++++.|...+++|+.+..+   |....+.+..+.+...++......++..|..+....
T Consensus       787 les~rn~~e~s~s~~e~~~~~~qlq~rh~s~sse~esl~rD---l~a~~rels~elr~a~~rq~~~~~ri~eL~qq~~qk  863 (1195)
T KOG4643|consen  787 LESNRNIRENSASLSEEKSRREQLQKRHKSCSSECESLRRD---LVATRRELSLELRRALDRQHNKNNRIDELKQQLNQK  863 (1195)
T ss_pred             hhhccchhhccchhHHHHhHHHHhhcchhhhcchhhhhhhh---HHHhhhhhhhHHHHHHHhhccccccccHHHHHhhhh
Confidence            33          34456667889999999999999999988   455555666666666666555666777777766555


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy3622         752 KFESHSLSNLRAEHSKLKDDFRILFTANEKLKADFRALQEEHKGNHMEKRKLTLSLTELEGELANRDDAISALSVQLSKY  831 (964)
Q Consensus       752 ~~e~~~~~~l~~e~~~l~~e~~~l~~~~e~l~~~~~~Lq~e~~~L~~e~~~lk~~l~~le~El~~~~e~~~~L~~~~~~L  831 (964)
                      ..+...+. ++      .+.....+...+++..++.....       .+..+..+-+.+-..+....+++.-+.-.+...
T Consensus       864 ~~~s~~ls-lr------t~s~~se~vtl~rf~nEsnr~~s-------~h~~ls~qn~eLs~~~~~~sdq~~~l~kd~p~~  929 (1195)
T KOG4643|consen  864 ISESNKLS-LR------TDSPISELVTLNRFLNESNRNLS-------QHEILSTQNKELSQRALHDSDQYHLLGKDFPDQ  929 (1195)
T ss_pred             hccccCcc-cc------cCChHHHHHHHHHHHHHhhccch-------hhhhhhhhhHHHHHHHHhcccchhhhCCCCchH
Confidence            44444333 22      23444556666777777766655       455566666666666665554444333221110


Q ss_pred             HHHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccccc
Q psy3622         832 QNKLEDDRRKLMEHV-TNLLAQYHELLTHSLEDKDHYHEEEKNFSDKLNNLHRQKEKLEEKIMEHYRKLDSCSSSSKKKS  910 (964)
Q Consensus       832 ~~~LEee~r~L~~q~-~~L~~q~~~Ll~~~le~k~~~~ee~~~~~~k~~~l~~q~e~l~~~l~e~y~~~~~a~~~~kk~~  910 (964)
                          .+-.+.....+ ..+..+++.|..  ++++.+|+++...|..+++...+++.....+.+..|..   .| +-++++
T Consensus       930 ----cgal~~~n~kl~~~~~sqyrtlk~--~~~Kk~f~ete~~y~~rva~~~~qk~~~~s~g~~~~e~---s~-vh~~~~  999 (1195)
T KOG4643|consen  930 ----CGALRRHNEKLPDKIMSQYRTLKP--LEDKKSFRETEQPYVKRVAKALIQKPRATSNGGSTTED---SS-VHSADE  999 (1195)
T ss_pred             ----HHhhhhccccCCccchhcccccch--hhccCCcchhccccchhhhhhhcCCCCccccCCcCCCC---Cc-ccCccc
Confidence                00001000011 145567777777  89999999999999999999999999998888877765   21 234455


Q ss_pred             hhhhHHHHHHhhchhhhccc----CCCCCcccccCCCCCCCCCccccchhhhhhcc
Q psy3622         911 FGANLVRKVRKAGSELINKS----RKSWHEDSLRKDRGTDSDTSLEDTLEWKVTTR  962 (964)
Q Consensus       911 ~~~~~~~k~~k~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  962 (964)
                      |.+.+++.++++.+++.+|.    +.+|.|+.    +|     |.++|.+|+++||
T Consensus      1000 rss~l~r~~~las~dl~~k~g~~~~~~~~p~~----~~-----S~~~~~~i~pd~h 1046 (1195)
T KOG4643|consen 1000 RSSPLLRVLHLASIDLFTKTGTNEDVDHLPPT----CS-----SSDDHDVISPDFH 1046 (1195)
T ss_pred             ccchHHHHHHHHHHHHHhccCchhhhhhCCcc----cc-----CCCCCCCCCCchh
Confidence            77889999999999999984    56776654    44     7889999999987

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms	Back alignment and domain information

>KOG0161\|consensus	Back alignment and domain information

>KOG4643\|consensus	Back alignment and domain information

>KOG0161\|consensus	Back alignment and domain information

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril	Back alignment and domain information

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG4674\|consensus	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type	Back alignment and domain information

>PRK02224 chromosome segregation protein; Provisional	Back alignment and domain information

>TIGR00606 rad50 rad50	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>KOG4674\|consensus	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []	Back alignment and domain information

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type	Back alignment and domain information

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG0933\|consensus	Back alignment and domain information

>PRK03918 chromosome segregation protein; Provisional	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>KOG0976\|consensus	Back alignment and domain information

>KOG0976\|consensus	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins	Back alignment and domain information

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)	Back alignment and domain information

>KOG0971\|consensus	Back alignment and domain information

>KOG0996\|consensus	Back alignment and domain information

>KOG0977\|consensus	Back alignment and domain information

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []	Back alignment and domain information

>PF14662 CCDC155: Coiled-coil region of CCDC155	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>KOG0962\|consensus	Back alignment and domain information

>KOG0977\|consensus	Back alignment and domain information

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins	Back alignment and domain information

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope	Back alignment and domain information

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins	Back alignment and domain information

>KOG0933\|consensus	Back alignment and domain information

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5	Back alignment and domain information

>PF14662 CCDC155: Coiled-coil region of CCDC155	Back alignment and domain information

>KOG0996\|consensus	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PRK04778 septation ring formation regulator EzrA; Provisional	Back alignment and domain information

>KOG0971\|consensus	Back alignment and domain information

>KOG0964\|consensus	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes	Back alignment and domain information

>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins []	Back alignment and domain information

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]	Back alignment and domain information

>KOG0612\|consensus	Back alignment and domain information

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain	Back alignment and domain information

>KOG4673\|consensus	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>PF15066 CAGE1: Cancer-associated gene protein 1 family	Back alignment and domain information

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function	Back alignment and domain information

>KOG4673\|consensus	Back alignment and domain information

>PRK11637 AmiB activator; Provisional	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain	Back alignment and domain information

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]	Back alignment and domain information

>PRK01156 chromosome segregation protein; Provisional	Back alignment and domain information

>PHA02562 46 endonuclease subunit; Provisional	Back alignment and domain information

>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex	Back alignment and domain information

>KOG0250\|consensus	Back alignment and domain information

>KOG0994\|consensus	Back alignment and domain information

>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function	Back alignment and domain information

>KOG0995\|consensus	Back alignment and domain information

>smart00033 CH Calponin homology domain	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)	Back alignment and domain information

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []	Back alignment and domain information

>KOG4593\|consensus	Back alignment and domain information

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)	Back alignment and domain information

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells	Back alignment and domain information

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]	Back alignment and domain information

>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity)	Back alignment and domain information

>KOG1029\|consensus	Back alignment and domain information

>PF13514 AAA_27: AAA domain	Back alignment and domain information

>PRK09039 hypothetical protein; Validated	Back alignment and domain information

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site	Back alignment and domain information

>KOG0250\|consensus	Back alignment and domain information

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues	Back alignment and domain information

>PF14915 CCDC144C: CCDC144C protein coiled-coil region	Back alignment and domain information

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []	Back alignment and domain information

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function	Back alignment and domain information

>PF13851 GAS: Growth-arrest specific micro-tubule binding	Back alignment and domain information

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins	Back alignment and domain information

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed	Back alignment and domain information

>PF14915 CCDC144C: CCDC144C protein coiled-coil region	Back alignment and domain information

>KOG0980\|consensus	Back alignment and domain information

>PRK04863 mukB cell division protein MukB; Provisional	Back alignment and domain information

>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function	Back alignment and domain information

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []	Back alignment and domain information

>PF15066 CAGE1: Cancer-associated gene protein 1 family	Back alignment and domain information

>KOG0980\|consensus	Back alignment and domain information

>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []	Back alignment and domain information

>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins	Back alignment and domain information

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]	Back alignment and domain information

>smart00787 Spc7 Spc7 kinetochore protein	Back alignment and domain information

>KOG0978\|consensus	Back alignment and domain information

>KOG0946\|consensus	Back alignment and domain information

>KOG1853\|consensus	Back alignment and domain information

>KOG0612\|consensus	Back alignment and domain information

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function	Back alignment and domain information

>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function	Back alignment and domain information

>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]	Back alignment and domain information

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []	Back alignment and domain information

>PF15254 CCDC14: Coiled-coil domain-containing protein 14	Back alignment and domain information

>KOG0946\|consensus	Back alignment and domain information

>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule	Back alignment and domain information

>KOG0999\|consensus	Back alignment and domain information

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

>KOG2129\|consensus	Back alignment and domain information

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch	Back alignment and domain information

>KOG0963\|consensus	Back alignment and domain information

>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules	Back alignment and domain information

>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]	Back alignment and domain information

>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []	Back alignment and domain information

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []	Back alignment and domain information

>PF13851 GAS: Growth-arrest specific micro-tubule binding	Back alignment and domain information

>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]	Back alignment and domain information

>KOG0995\|consensus	Back alignment and domain information

>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure	Back alignment and domain information

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

>KOG0964\|consensus	Back alignment and domain information

>KOG1853\|consensus	Back alignment and domain information

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease	Back alignment and domain information

>KOG4593\|consensus	Back alignment and domain information

>KOG0804\|consensus	Back alignment and domain information

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []	Back alignment and domain information

>KOG0963\|consensus	Back alignment and domain information

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []	Back alignment and domain information

>KOG1003\|consensus	Back alignment and domain information

>KOG0994\|consensus	Back alignment and domain information

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch	Back alignment and domain information

>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells	Back alignment and domain information

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation	Back alignment and domain information

>KOG4360\|consensus	Back alignment and domain information

>PRK10884 SH3 domain-containing protein; Provisional	Back alignment and domain information

>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins	Back alignment and domain information

>PF15397 DUF4618: Domain of unknown function (DUF4618)	Back alignment and domain information

>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site	Back alignment and domain information

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family	Back alignment and domain information

>KOG1899\|consensus	Back alignment and domain information

>PRK15422 septal ring assembly protein ZapB; Provisional	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		964
1wix_A		164	HOOK homolog 1, RSGI RUH-026; structural genomics,	1e-34
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-20
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-18
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-15
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	5e-18
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	3e-17
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	4e-16
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	6e-16
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	7e-14
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-12
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-09
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-08
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-08
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	8e-08
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-07
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-07
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	6e-04
3na7_A		256	HP0958; flagellar biogenesis, flagellum export, C4	2e-05
1sjj_A		863	Actinin; 3-helix bundle, calponin homology domain,	9e-05
1g8x_A		1010	Myosin II heavy chain fused to alpha-actinin 3; mo	1e-04

>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1 Length = 164	Back alignment and structure

 Score =  129 bits (325), Expect = 1e-34
 Identities = 39/165 (23%), Positives = 68/165 (41%), Gaps = 12/165 (7%)

Query: 6   ATSTEIEEFLKGPLVTWLLSCLSNPDRLSDYEDLADGIYIHEVYLLIDPEPVHQSVVPSL 65
            +S      L   L+ WL +         D + L +G+ + +V   ID     +S +  +
Sbjct: 1   GSSGSSGLPLCDSLIIWLQT-FKTASPCQDVKQLTNGVTMAQVLHQIDVAWFSESWLSRI 59

Query: 66  R-----NASVRIKNFNTIVKNIKSLYEEELCQIV--LVLPDVLIIGREPESKQGLENMKL 118
           +     N  ++  N   ++  I S Y E L Q +   ++PD+  I            +  
Sbjct: 60  KDDVGDNWRIKASNLKKVLHGITSYYHEFLGQQISEELIPDLNQITECA----DPVELGR 115

Query: 119 LLLLLLGCAVQCPNKETFIERIKELPVESQHALVDCIKQVTENQD 163
           LL L+LGCAV C  K+  I+ I  L    QH ++  I+++     
Sbjct: 116 LLQLILGCAVNCEKKQEHIKNIMTLEESVQHVVMTAIQELMSKSG 160

PyMOL of 1wix

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080	Back alignment and structure

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Length = 256	Back alignment and structure

>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863	Back alignment and structure

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		964
1wix_A		164	HOOK homolog 1, RSGI RUH-026; structural genomics,	100.0
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.35
1c1g_A		284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.31
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	97.97
1i84_S		1184	Smooth muscle myosin heavy chain; muscle protein,	97.89
2v71_A		189	Nuclear distribution protein NUDE-like 1; developm	96.79
2v71_A		189	Nuclear distribution protein NUDE-like 1; developm	96.75
3o0z_A		168	RHO-associated protein kinase 1; coiled-coil, tran	96.47
2ee7_A		127	Sperm flagellar protein 1; all alpha protein, CH d	96.47
3na7_A		256	HP0958; flagellar biogenesis, flagellum export, C4	96.33
2fxo_A		129	Myosin heavy chain, cardiac muscle beta isoform; c	95.92
1wyo_A		159	Protein EB3, microtubule-associated protein RP/EB	95.85
2fxo_A		129	Myosin heavy chain, cardiac muscle beta isoform; c	95.69
2qjz_A		123	Microtubule-associated protein RP/EB family member	95.5
3o0z_A		168	RHO-associated protein kinase 1; coiled-coil, tran	95.26
3na7_A		256	HP0958; flagellar biogenesis, flagellum export, C4	95.25
2yrn_A		129	Neuron navigator 2 isoform 4; calponin homolgy dom	95.14
1wjo_A		124	T-plastin; CH domain, actin binding, structural ge	94.9
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	94.74
2vzc_A		131	Alpha-parvin; membrane, cytoplasm, cytoskeleton, c	94.16
2dfs_A		1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	93.45
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	93.41
4abo_I		145	MAL3, microtubule integrity protein MAL3; structur	93.32
1wyp_A		136	Calponin 1; CH domain, F-actin binding, all-alpha,	92.69
2r8u_A		268	Microtubule-associated protein RP/EB family member	92.66
2qjx_A		127	Protein BIM1; calponin homology domain, protein bi	92.62
2l3g_A		126	RHO guanine nucleotide exchange factor 7; structur	91.95
1h67_A		108	Calponin alpha; cytoskeleton, calponin homology do	91.78
1wyr_A		121	RHO guanine nucleotide exchange factor 6; CH domai	91.52
2v4h_A		110	NF-kappa-B essential modulator; transcription, met	91.07
2wa7_A		245	Filamin-B; disease mutation, skeletal dysplasia, s	91.01
3vkg_A		3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	90.87
1wyn_A		146	Calponin-2; CH domain, F-actin binding, all alpha	90.78
3hoc_A		272	Filamin-A; calponin homology domain, actin binding	90.76
3u1c_A		101	Tropomyosin alpha-1 chain; anti-parallel coiled co	90.47
4b7l_A		347	Filamin-B; structural protein, FR 1 filamin hinge	90.38
4gkw_A		167	Spindle assembly abnormal protein 6; double helix,	89.9
2ocy_A		154	RAB guanine nucleotide exchange factor SEC2; RAB,	89.47
1sh5_A		245	Plectin 1, PLTN, PCN; actin-binding domain, calpon	88.92
3ol1_A		119	Vimentin; structural genomics, PSI-2, protein stru	88.76
2v66_B		111	Nuclear distribution protein NUDE-like 1; structur	88.56
1p2x_A		159	RNG2 protein, RAS GTPase-activating-like protein;	88.5
1ujo_A		144	Transgelin; CH domain, actin binding, structural g	87.88
3u1c_A		101	Tropomyosin alpha-1 chain; anti-parallel coiled co	87.67
1wku_A		254	Alpha-actinin 3; calponin homology domain, actin b	86.39
2jee_A		81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	86.33
1dxx_A		246	Dystrophin; structural protein, muscular dystrophy	86.15
3tnu_B		129	Keratin, type II cytoskeletal 5; coiled-coil, stru	85.97
1wym_A		155	Transgelin-2; CH domain, F-actin binding, all heli	85.52
3ol1_A		119	Vimentin; structural genomics, PSI-2, protein stru	84.96
2eqb_B		97	RAB guanine nucleotide exchange factor SEC2; coile	84.72
1aoa_A		275	T-fimbrin; actin-binding protein, calcium-binding,	84.66
3tnu_A		131	Keratin, type I cytoskeletal 14; coiled-coil, stru	84.5
2d87_A		128	Smoothelin splice isoform L2; all alpha, calponin	83.87
3u59_A		101	Tropomyosin beta chain; muscle contraction, actin,	83.79
3u59_A		101	Tropomyosin beta chain; muscle contraction, actin,	83.34
1p5s_A		203	RAS GTPase-activating-like protein RNG2; alpha-hel	83.3
2eqb_B		97	RAB guanine nucleotide exchange factor SEC2; coile	82.77
2efr_A		155	General control protein GCN4 and tropomyosin 1 Al;	82.66
3jsv_C		94	NF-kappa-B essential modulator; ubiquitin, coiled-	82.59
3a7p_A		152	Autophagy protein 16; coiled-coil, coiled coil, cy	81.21
2d89_A		119	EHBP1 protein; all alpha, calponin homology domain	81.01
3f7p_A		296	Plectin-1; plakin, hemidesmosome, cell adhesion, e	80.85
2wa7_A		245	Filamin-B; disease mutation, skeletal dysplasia, s	80.14

>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1	Back alignment and structure

Probab=100.00  E-value=1.6e-38  Score=313.57  Aligned_cols=145  Identities=26%  Similarity=0.417  Sum_probs=134.8

Q ss_pred             HhhhhhHHHHHhhcCCCCCCCCcccccccHHHHHHHHHhhCCCCCCCCC----CCCCc-chHHHhhhHHHHHHHHHHHHH
Q psy3622          13 EFLKGPLVTWLLSCLSNPDRLSDYEDLADGIYIHEVYLLIDPEPVHQSV----VPSLR-NASVRIKNFNTIVKNIKSLYE   87 (964)
Q Consensus        13 ~~~~~~L~~W~~tf~~~~~~~~~~~dL~dG~~l~~vl~~iDp~~~~~~~----~~~~~-~~~~~~~Nl~~i~~~i~~yy~   87 (964)
                      .++++|||.||+||.. +.|+.+++||+||++|++||++|||+||+++|    ..+++ ||++|++||++|+++|.+||+
T Consensus         8 ~~~~~aLl~W~~tf~~-~~~~~~~~dL~DG~~L~~iL~~IDp~~F~~~~l~~i~~~~~~nw~lr~~NLk~l~~~i~~Yy~   86 (164)
T 1wix_A            8 LPLCDSLIIWLQTFKT-ASPCQDVKQLTNGVTMAQVLHQIDVAWFSESWLSRIKDDVGDNWRIKASNLKKVLHGITSYYH   86 (164)
T ss_dssp             CHHHHHHHHHHTTCCC-SSCCCSHHHHTTSHHHHHHHHHHCTTTSCHHHHTTCCSGGGGCSHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCC-CCCcCcHHHhccHHHHHHHHHHhCccccCchHhhhhcccCcccHHHHHHHHHHHHHHHHHHHH
Confidence            5788999999999985 67899999999999999999999999999866    33454 699999999999999999999


Q ss_pred             HHhhhhcc--cCCchhhhccCCCchhhHHHHHHHHHHHHHHhhcCCCchhhhHHhhcCCHHHHHHHHHHHHhhhhcc
Q psy3622          88 EELCQIVL--VLPDVLIIGREPESKQGLENMKLLLLLLLGCAVQCPNKETFIERIKELPVESQHALVDCIKQVTENQ  162 (964)
Q Consensus        88 e~l~~~~~--~~pd~~~i~~~~~s~~~~~el~~ll~l~lg~av~~~~~~~~I~~I~~L~~~~Q~~l~~~Iq~v~~~~  162 (964)
                      ++|++.+.  ++||+..||++|+    +.+|.+|+.|||||||+||+|+.||++||+|++++|++||.+||+||...
T Consensus        87 e~L~~~i~~~~~pd~~~Ia~~~d----~~el~kLl~LiLg~AV~c~~ke~~I~~I~~L~~~~Q~~im~~Iqev~~~~  159 (164)
T 1wix_A           87 EFLGQQISEELIPDLNQITECAD----PVELGRLLQLILGCAVNCEKKQEHIKNIMTLEESVQHVVMTAIQELMSKS  159 (164)
T ss_dssp             TTTCCCCCTTTCCCHHHHHTTCC----HHHHHHHHHHHHHHTTSSSTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHhcCcccccCCCCHHHHHhCCC----HHHHHHHHHHHHHHHHcCCchHHHHHHHHcCCHHHHHHHHHHHHHHHccc
Confidence            99999874  6899999999998    89999999999999999999999999999999999999999999999864

PyMOL of 1wix

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A	Back alignment and structure

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A	Back alignment and structure

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A	Back alignment and structure

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}	Back alignment and structure

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}	Back alignment and structure

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}	Back alignment and structure

>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}	Back alignment and structure

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A	Back alignment and structure

>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A	Back alignment and structure

>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A	Back alignment and structure

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}	Back alignment and structure

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}	Back alignment and structure

>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}	Back alignment and structure

>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B*	Back alignment and structure

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*	Back alignment and structure

>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe}	Back alignment and structure

>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}	Back alignment and structure

>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A	Back alignment and structure

>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae}	Back alignment and structure

>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens}	Back alignment and structure

>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1	Back alignment and structure

>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}	Back alignment and structure

>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}	Back alignment and structure

>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A	Back alignment and structure

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*	Back alignment and structure

>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}	Back alignment and structure

>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A	Back alignment and structure

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A	Back alignment and structure

>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A	Back alignment and structure

>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans}	Back alignment and structure

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1	Back alignment and structure

>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A	Back alignment and structure

>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}	Back alignment and structure

>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1	Back alignment and structure

>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1	Back alignment and structure

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A	Back alignment and structure

>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K	Back alignment and structure

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}	Back alignment and structure

>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A	Back alignment and structure

>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}	Back alignment and structure

>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1	Back alignment and structure

>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1	Back alignment and structure

>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}	Back alignment and structure

>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A	Back alignment and structure

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}	Back alignment and structure

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}	Back alignment and structure

>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1	Back alignment and structure

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1	Back alignment and structure

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A	Back alignment and structure

>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B	Back alignment and structure

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}	Back alignment and structure

>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens}	Back alignment and structure

>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens}	Back alignment and structure

>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		964
d1wixa_		164	a.40.3.1 (A:) Hook homolog 1, Hook1 {Mouse (Mus mu	1e-32

>d1wixa_ a.40.3.1 (A:) Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164	Back information, alignment and structure


class: All alpha proteins
fold: CH domain-like
superfamily: Hook domain
family: Hook domain
domain: Hook homolog 1, Hook1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  121 bits (306), Expect = 1e-32
 Identities = 39/164 (23%), Positives = 68/164 (41%), Gaps = 12/164 (7%)

Query: 6   ATSTEIEEFLKGPLVTWLLSCLSNPDRLSDYEDLADGIYIHEVYLLIDPEPVHQSVVPSL 65
            +S      L   L+ WL +         D + L +G+ + +V   ID     +S +  +
Sbjct: 1   GSSGSSGLPLCDSLIIWLQTF-KTASPCQDVKQLTNGVTMAQVLHQIDVAWFSESWLSRI 59

Query: 66  R-----NASVRIKNFNTIVKNIKSLYEEELCQIVLV--LPDVLIIGREPESKQGLENMKL 118
           +     N  ++  N   ++  I S Y E L Q +    +PD+  I    +       +  
Sbjct: 60  KDDVGDNWRIKASNLKKVLHGITSYYHEFLGQQISEELIPDLNQITECAD----PVELGR 115

Query: 119 LLLLLLGCAVQCPNKETFIERIKELPVESQHALVDCIKQVTENQ 162
           LL L+LGCAV C  K+  I+ I  L    QH ++  I+++    
Sbjct: 116 LLQLILGCAVNCEKKQEHIKNIMTLEESVQHVVMTAIQELMSKS 159

PyMOL of d1wixa_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		964
d1wixa_		164	Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId	100.0
d1wjoa_		124	Fimbrin (Plastin), actin-crosslinking domain {Huma	96.25
d1sh5a1		120	Actin binding domain of plectin {Human (Homo sapie	95.58
d2qjza1		120	Microtubule-associated protein eb1, N-terminal mic	95.05
d1aoaa1		131	Fimbrin (Plastin), actin-crosslinking domain {Huma	95.01
d1dxxa1		111	Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	93.4
d1p2xa_		159	Ras GTPase-activating-like protein rng2 {Fission y	93.16
d1aoaa2		116	Fimbrin (Plastin), actin-crosslinking domain {Huma	91.79
d1bkra_		108	beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}	90.52
d1ujoa_		144	Transgelin {Mouse (Mus musculus) [TaxId: 10090]}	89.89
d1h67a_		108	Calponin {Chicken (Gallus gallus) [TaxId: 9031]}	89.17
d1pxya_		500	Fimbrin (Plastin), actin-crosslinking domain {Thal	86.69
d1bhda_		108	Utrophin {Human (Homo sapiens) [TaxId: 9606]}	83.74
d1rt8a_		505	Fimbrin (Plastin), actin-crosslinking domain {Fiss	81.27
d1dxxa2		127	Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	80.53

>d1wixa_ a.40.3.1 (A:) Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

class: All alpha proteins
fold: CH domain-like
superfamily: Hook domain
family: Hook domain
domain: Hook homolog 1, Hook1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=4.3e-39  Score=314.48  Aligned_cols=144  Identities=26%  Similarity=0.432  Sum_probs=134.0

Q ss_pred             hhhhhHHHHHhhcCCCCCCCCcccccccHHHHHHHHHhhCCCCCCCCCC----CCCc-chHHHhhhHHHHHHHHHHHHHH
Q psy3622          14 FLKGPLVTWLLSCLSNPDRLSDYEDLADGIYIHEVYLLIDPEPVHQSVV----PSLR-NASVRIKNFNTIVKNIKSLYEE   88 (964)
Q Consensus        14 ~~~~~L~~W~~tf~~~~~~~~~~~dL~dG~~l~~vl~~iDp~~~~~~~~----~~~~-~~~~~~~Nl~~i~~~i~~yy~e   88 (964)
                      .||+|||.||+||. .+.++.+|+||+||++|++||++|||+||+++|.    .+++ ||++|++||++|+++|..||++
T Consensus         9 ~l~~aLv~W~~tf~-~~~~~~~~~dL~DGv~l~~iL~qIdP~~f~~~~~~~~~~d~~~nw~lr~~NLk~i~~~i~~Yy~e   87 (164)
T d1wixa_           9 PLCDSLIIWLQTFK-TASPCQDVKQLTNGVTMAQVLHQIDVAWFSESWLSRIKDDVGDNWRIKASNLKKVLHGITSYYHE   87 (164)
T ss_dssp             HHHHHHHHHHTTCC-CSSCCCSHHHHTTSHHHHHHHHHHCTTTSCHHHHTTCCSGGGGCSHHHHHHHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHHHcC-CCcccCCHHHHhchHHHHHHHHHhCccccCchhhhcccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            37889999999997 4788999999999999999999999999998773    3444 5999999999999999999999


Q ss_pred             Hhhhhcc--cCCchhhhccCCCchhhHHHHHHHHHHHHHHhhcCCCchhhhHHhhcCCHHHHHHHHHHHHhhhhcc
Q psy3622          89 ELCQIVL--VLPDVLIIGREPESKQGLENMKLLLLLLLGCAVQCPNKETFIERIKELPVESQHALVDCIKQVTENQ  162 (964)
Q Consensus        89 ~l~~~~~--~~pd~~~i~~~~~s~~~~~el~~ll~l~lg~av~~~~~~~~I~~I~~L~~~~Q~~l~~~Iq~v~~~~  162 (964)
                      +|++.+.  ++||+..||+++|    +.+|.+|+.|+|||||+|++|++||++||+||+++|++||.+||+|++..
T Consensus        88 ~l~~~i~~~~~pd~~~Iae~~d----~~el~kLl~LiLg~AV~c~~ke~~I~~I~~Ld~~tQ~~im~~Iqev~~~~  159 (164)
T d1wixa_          88 FLGQQISEELIPDLNQITECAD----PVELGRLLQLILGCAVNCEKKQEHIKNIMTLEESVQHVVMTAIQELMSKS  159 (164)
T ss_dssp             TTCCCCCTTTCCCHHHHHTTCC----HHHHHHHHHHHHHHTTSSSTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHC
T ss_pred             HhcCccccccCCCHHHHhcCCC----HHHHHHHHHHHHHHHHhCCchHHHHHHHHcCCHHHHHHHHHHHHHHHhcc
Confidence            9999886  4799999999998    78999999999999999999999999999999999999999999999865

PyMOL of d1wixa_

>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]}	Back information, alignment and structure

>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure