Psyllid ID: psy3703

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------8
Protein Sequence
MIKKYEVPSLSVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSNSKLKKKKKKKN
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mikkyevpslsvlpdnlDMMVANAERLYYGCAYKKCFtiteqvlsrdpyhtaclPLHIACLVEMNKsnsklkkkkkkkn
Flexible Loop (DISEMBL)
mikkyevpslsvlpdnLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMnksnsklkkkkkkkn
Low Complexity Region (SEG)
MIKKYEVPSLSVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMnksnsklkkkkkkkn
Disordered region (IsUnstruct)
**********SVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVE****************
Disordered Region (DISOPRED)
*********LSVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSNSKLKKKKK***
Disordered Region (DISEMBL)
MIKKYEVPSLSVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKS************
Disordered Region (DISPRO)
*IKKYEVPSLSVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSNSKLKKKK****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MIKKYEVPSLSVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSNSKLKKKKKKKN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	79	2.2.26 [Sep-21-2011]
Q13042	620	Cell division cycle prote	yes	N/A	0.848	0.108	0.472	9e-15
Q8R349	620	Cell division cycle prote	yes	N/A	0.848	0.108	0.472	1e-14
B3DNN5	543	Anaphase-promoting comple	yes	N/A	0.759	0.110	0.366	4e-07
P09798	840	Anaphase-promoting comple	yes	N/A	0.708	0.066	0.339	0.0002

>sp|Q13042|CDC16_HUMAN Cell division cycle protein 16 homolog OS=Homo sapiens GN=CDC16 PE=1 SV=2

 Score = 79.0 bits (193), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 52/74 (70%), Gaps = 7/74 (9%)

Query: 2   IKKYEVPSLSVLPD-------NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL 54
           +KKY  PS +V+P+       NLD++V+ AER YY C +K C+ +T  V+ +DP+H +CL
Sbjct: 209 LKKYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCL 268

Query: 55  PLHIACLVEMNKSN 68
           P+HI  LVE+NK+N
Sbjct: 269 PVHIGTLVELNKAN 282

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.
Homo sapiens (taxid: 9606)

>sp|Q8R349|CDC16_MOUSE Cell division cycle protein 16 homolog OS=Mus musculus GN=Cdc16 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/74 (47%), Positives = 51/74 (68%), Gaps = 7/74 (9%)

Query: 2   IKKYEVPSLSVLPD-------NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL 54
           +KKY  PS +V+P+       NLD++V+ AER YY C +K C+ +T  V+ +DP+H  CL
Sbjct: 209 LKKYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSTVMEKDPFHANCL 268

Query: 55  PLHIACLVEMNKSN 68
           P+HI  LVE+NK+N
Sbjct: 269 PVHIGTLVELNKAN 282

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin ligase that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex acts by mediating ubiquitination and subsequent degradation of target proteins: it mainly mediates the formation of 'Lys-11'-linked polyubiquitin chains and, to a lower extent, the formation of 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains.

Mus musculus (taxid: 10090)

>sp|B3DNN5|CDC16_ARATH Anaphase-promoting complex subunit 6 OS=Arabidopsis thaliana GN=APC6 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 36/60 (60%)

Query: 9   SLSVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSN 68
           S+  L +N D++   AE  +  C Y+KCF +T  +L +DP+H  C  +H+A  +E+  SN
Sbjct: 233 SMITLANNTDLLACKAEYYHQCCEYQKCFELTAALLEKDPFHLKCTLVHLAAAMELGNSN 292

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C complex controls several key steps in the cell cycle by mediating ubiquitination and subsequent degradation of target proteins such as cyclins. The APC/C complex is required for the female gametophyte development and is involved in several aspect of development by controlling cell division and cell elongation. Involved in the control of endoreduplication.

Arabidopsis thaliana (taxid: 3702)

>sp|P09798|CDC16_YEAST Anaphase-promoting complex subunit CDC16 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CDC16 PE=1 SV=1

 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 32/56 (57%)

Query: 13  LPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSN 68
           L DN+D++ +  +  Y  C + +C  + E VL  D ++T  LP +I CL E++  N
Sbjct: 459 LADNVDVVRSKVDICYTQCKFNECLELCETVLENDEFNTNILPAYIGCLYELSNKN 514

Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. The APC/C is thought to confer substrate specificity and, in the presence of ubiquitin-conjugating E2 enzymes, it catalyzes the formation of protein-ubiquitin conjugates that are subsequently degraded by the 26S proteasome. In early mitosis, the APC/C is activated by CDC20 and targets securin PDS1, the B-type cyclin CLB5, and other anaphase inhibitory proteins for proteolysis, thereby triggering the separation of sister chromatids at the metaphase-to-anaphase transition. In late mitosis and in G1, degradation of CLB5 allows activation of the APC/C by CDH1, which is needed to destroy CDC20 and the B-type cyclin CLB2 to allow exit from mitosis and creating the low CDK state necessary for cytokinesis and for reforming prereplicative complexes in G1 prior to another round of replication.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
322802965	658	hypothetical protein SINV_09657 [Solenop	0.721	0.086	0.666	6e-17
383856906	640	PREDICTED: cell division cycle protein 1	0.721	0.089	0.666	7e-17
193613132	671	PREDICTED: cell division cycle protein 1	0.860	0.101	0.544	1e-16
307170118	642	Cell division cycle protein 16-like prot	0.721	0.088	0.649	2e-16
156551107	633	PREDICTED: cell division cycle protein 1	0.721	0.090	0.649	2e-16
307212645	568	Cell division cycle protein 16-like prot	0.721	0.100	0.631	5e-16
380015507	640	PREDICTED: cell division cycle protein 1	0.721	0.089	0.631	8e-16
328777568	640	PREDICTED: cell division cycle protein 1	0.721	0.089	0.631	8e-16
340713132	651	PREDICTED: cell division cycle protein 1	0.721	0.087	0.631	2e-15
332029241	662	Cell division cycle protein 16-like prot	0.721	0.086	0.614	2e-15

>gi|322802965|gb|EFZ23102.1| hypothetical protein SINV_09657 [Solenopsis invicta]

 Score = 91.7 bits (226), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 38/57 (66%), Positives = 48/57 (84%)

Query: 13  LPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSNS 69
           L DNLDM VA AERLYY C Y +CF++TE++L +DPYH ACLP+HIACLVE+ K+N+
Sbjct: 250 LADNLDMEVAKAERLYYNCDYHQCFSLTEKILKKDPYHNACLPVHIACLVELKKTNA 306

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856906|ref|XP_003703947.1| PREDICTED: cell division cycle protein 16 homolog [Megachile rotundata]

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 38/57 (66%), Positives = 48/57 (84%)

Query: 13  LPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSNS 69
           L DNLDM VA AERLYY C Y KCF++TE++L +DPYH +CLP+HIACLVE+ K+N+
Sbjct: 238 LLDNLDMEVAKAERLYYNCDYHKCFSLTERILKKDPYHNSCLPIHIACLVELKKTNA 294

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193613132|ref|XP_001950982.1| PREDICTED: cell division cycle protein 16 homolog [Acyrthosiphon pisum]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 43/79 (54%), Positives = 53/79 (67%), Gaps = 11/79 (13%)

Query: 1   MIKKYEVPSLS-----------VLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPY 49
           ++KKY+ P L+           ++ DNLD+  A AER YY CAYK CF ITE VL +DPY
Sbjct: 208 LLKKYQEPKLTGPFSQFDIPVELIMDNLDIQEAEAERHYYACAYKDCFQITESVLKQDPY 267

Query: 50  HTACLPLHIACLVEMNKSN 68
           H  CLP+HIACLVE+ KSN
Sbjct: 268 HPECLPIHIACLVELEKSN 286

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307170118|gb|EFN62536.1| Cell division cycle protein 16-like protein [Camponotus floridanus]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/57 (64%), Positives = 47/57 (82%)

Query: 13  LPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSNS 69
           L DNLDM VA AERLYY C Y +CF++TE +L +DPYH +CLP+HIACLVE+ K+N+
Sbjct: 240 LADNLDMQVAKAERLYYNCDYHQCFSLTEIILKKDPYHNSCLPVHIACLVELKKTNA 296

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156551107|ref|XP_001603275.1| PREDICTED: cell division cycle protein 16 homolog [Nasonia vitripennis]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/57 (64%), Positives = 46/57 (80%)

Query: 13  LPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSNS 69
           L DNLDM VA AERLYY C Y +CF++TE++L  DPYH  CLP+HIACLVE+ K+N+
Sbjct: 250 LKDNLDMKVAEAERLYYNCDYHQCFSLTERILKTDPYHNGCLPVHIACLVELKKTNA 306

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212645|gb|EFN88348.1| Cell division cycle protein 16-like protein [Harpegnathos saltator]

 Score = 88.2 bits (217), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 46/57 (80%)

Query: 13  LPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSNS 69
           L DNLDM V  AERLYY C Y +CF +TE++L +DPYH +CLP+HIACLVE+ K+N+
Sbjct: 250 LADNLDMEVTKAERLYYNCEYHQCFALTEKILRKDPYHNSCLPVHIACLVELKKTNA 306

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380015507|ref|XP_003691742.1| PREDICTED: cell division cycle protein 16 homolog [Apis florea]

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 47/57 (82%)

Query: 13  LPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSNS 69
           L  NLDM V  AERLYY C Y+KCF++TE++L +DPYH +CLP+HIACLVE+ K+N+
Sbjct: 238 LLGNLDMEVTEAERLYYNCDYQKCFSLTERILKKDPYHNSCLPVHIACLVELKKTNA 294

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328777568|ref|XP_623316.2| PREDICTED: cell division cycle protein 16 homolog [Apis mellifera]

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 47/57 (82%)

Query: 13  LPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSNS 69
           L  NLDM V  AERLYY C Y+KCF++TE++L +DPYH +CLP+HIACLVE+ K+N+
Sbjct: 238 LLGNLDMEVTEAERLYYNCDYQKCFSLTERILKKDPYHNSCLPVHIACLVELKKTNA 294

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713132|ref|XP_003395102.1| PREDICTED: cell division cycle protein 16 homolog [Bombus terrestris]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 36/57 (63%), Positives = 46/57 (80%)

Query: 13  LPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSNS 69
           L  NLDM V  AERLYY C Y KCF++TE++L +DPYH +CLP+HIACLVE+ K+N+
Sbjct: 250 LLGNLDMEVTEAERLYYNCDYHKCFSLTERILKKDPYHNSCLPVHIACLVELKKTNA 306

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332029241|gb|EGI69224.1| Cell division cycle protein 16-like protein [Acromyrmex echinatior]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 48/57 (84%)

Query: 13  LPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSNS 69
           L +NLDM VA AE+LYY C Y +CF++TE++L +DPYH +CLP+HIACLVE+ K+N+
Sbjct: 249 LANNLDMEVAKAEKLYYNCDYHQCFSLTEKILKKDPYHNSCLPVHIACLVELKKTNA 305

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	79
UNIPROTKB|Q7Z651	526	CDC16 "CDC16 cell division cyc	0.797	0.119	0.457	1.8e-12
ZFIN|ZDB-GENE-051113-132	616	cdc16 "cell division cycle 16	0.797	0.102	0.471	2.4e-12
UNIPROTKB|Q13042	620	CDC16 "Cell division cycle pro	0.797	0.101	0.457	2.4e-12
UNIPROTKB|I3L944	620	CDC16 "Uncharacterized protein	0.797	0.101	0.471	2.4e-12
UNIPROTKB|E2R5H6	620	CDC16 "Uncharacterized protein	0.797	0.101	0.471	3.1e-12
MGI|MGI:1917207	620	Cdc16 "CDC16 cell division cyc	0.797	0.101	0.457	4e-12
RGD|1305076	620	Cdc16 "cell division cycle 16"	0.797	0.101	0.457	4e-12
UNIPROTKB|E1BPM5	620	CDC16 "Uncharacterized protein	0.797	0.101	0.457	5.1e-12
UNIPROTKB|F1P4A5	623	CDC16 "Uncharacterized protein	0.797	0.101	0.442	3.7e-11
FB|FBgn0025781	719	Cdc16 "Cell division cycle 16	0.582	0.063	0.478	2e-07

UNIPROTKB|Q7Z651 CDC16 "CDC16 cell division cycle 16 homolog (S. cerevisiae), isoform CRA_h" [Homo sapiens (taxid:9606)]

 Score = 175 (66.7 bits), Expect = 1.8e-12, P = 1.8e-12
 Identities = 32/70 (45%), Positives = 48/70 (68%)

Query:     2 IKKYEVPSLSVLPD-------NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL 54
             +KKY  PS +V+P+       NLD++V+ AER YY C +K C+ +T  V+ +DP+H +CL
Sbjct:   115 LKKYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCL 174

Query:    55 PLHIACLVEM 64
             P+HI  LVE+
Sbjct:   175 PVHIGTLVEL 184

GO:0051301 "cell division" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-051113-132 cdc16 "cell division cycle 16 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 175 (66.7 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 33/70 (47%), Positives = 47/70 (67%)

Query:     2 IKKYEVPSLSVLPD-------NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL 54
             +KKY  PS  V+PD       NLD++V+ AER YY C +K C+++T  V+ +DP+H  CL
Sbjct:   210 LKKYNKPSEMVVPDIVNGLQDNLDVVVSLAERHYYNCDFKMCYSLTSMVMVKDPFHANCL 269

Query:    55 PLHIACLVEM 64
             P+HI  LVE+
Sbjct:   270 PVHIGTLVEL 279

GO:0007049 "cell cycle" evidence=IMP

GO:0051301 "cell division" evidence=IEA

UNIPROTKB|Q13042 CDC16 "Cell division cycle protein 16 homolog" [Homo sapiens (taxid:9606)]

 Score = 175 (66.7 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 32/70 (45%), Positives = 48/70 (68%)

Query:     2 IKKYEVPSLSVLPD-------NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL 54
             +KKY  PS +V+P+       NLD++V+ AER YY C +K C+ +T  V+ +DP+H +CL
Sbjct:   209 LKKYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCL 268

Query:    55 PLHIACLVEM 64
             P+HI  LVE+
Sbjct:   269 PVHIGTLVEL 278

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=IDA

GO:0005680 "anaphase-promoting complex" evidence=IDA

GO:0005819 "spindle" evidence=TAS

GO:0007088 "regulation of mitosis" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

GO:0005813 "centrosome" evidence=IDA

GO:0005876 "spindle microtubule" evidence=IDA

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0007094 "mitotic spindle assembly checkpoint" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|I3L944 CDC16 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 175 (66.7 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 33/70 (47%), Positives = 47/70 (67%)

Query:     2 IKKYEVPSLSVLPD-------NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL 54
             +KKY  PS SV+P+       NLD++V+ AER YY C +K C+ +T  V+ +DP+H  CL
Sbjct:   209 LKKYNKPSESVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHANCL 268

Query:    55 PLHIACLVEM 64
             P+HI  LVE+
Sbjct:   269 PVHIGTLVEL 278

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

UNIPROTKB|E2R5H6 CDC16 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 174 (66.3 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 33/70 (47%), Positives = 47/70 (67%)

Query:     2 IKKYEVPSLSVLPD-------NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL 54
             +KKY  PS +VLP+       NLD++V+ AER YY C +K C+ +T  V+ +DP+H  CL
Sbjct:   209 LKKYNKPSETVLPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHANCL 268

Query:    55 PLHIACLVEM 64
             P+HI  LVE+
Sbjct:   269 PVHIGTLVEL 278

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

MGI|MGI:1917207 Cdc16 "CDC16 cell division cycle 16" [Mus musculus (taxid:10090)]

 Score = 173 (66.0 bits), Expect = 4.0e-12, P = 4.0e-12
 Identities = 32/70 (45%), Positives = 47/70 (67%)

Query:     2 IKKYEVPSLSVLPD-------NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL 54
             +KKY  PS +V+P+       NLD++V+ AER YY C +K C+ +T  V+ +DP+H  CL
Sbjct:   209 LKKYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSTVMEKDPFHANCL 268

Query:    55 PLHIACLVEM 64
             P+HI  LVE+
Sbjct:   269 PVHIGTLVEL 278

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005680 "anaphase-promoting complex" evidence=ISO

GO:0005813 "centrosome" evidence=ISO

GO:0005876 "spindle microtubule" evidence=ISO

GO:0007049 "cell cycle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=ISO

RGD|1305076 Cdc16 "cell division cycle 16" [Rattus norvegicus (taxid:10116)]

 Score = 173 (66.0 bits), Expect = 4.0e-12, P = 4.0e-12
 Identities = 32/70 (45%), Positives = 47/70 (67%)

Query:     2 IKKYEVPSLSVLP-------DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL 54
             +KKY  PS +V+P       +NLD++V+ AER YY C +K C+ +T  V+ +DP+H  CL
Sbjct:   209 LKKYNKPSETVIPQSVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSAVMEKDPFHANCL 268

Query:    55 PLHIACLVEM 64
             P+HI  LVE+
Sbjct:   269 PVHIGTLVEL 278

GO:0005634 "nucleus" evidence=ISO

GO:0005680 "anaphase-promoting complex" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005813 "centrosome" evidence=IEA;ISO

GO:0005876 "spindle microtubule" evidence=IEA;ISO

GO:0051301 "cell division" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA;ISO

UNIPROTKB|E1BPM5 CDC16 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 172 (65.6 bits), Expect = 5.1e-12, P = 5.1e-12
 Identities = 32/70 (45%), Positives = 47/70 (67%)

Query:     2 IKKYEVPSLSVLP-------DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL 54
             +KKY  PS +V+P       +NLD++V+ AER YY C +K C+ +T  V+ +DP+H  CL
Sbjct:   209 LKKYNKPSETVIPASVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHANCL 268

Query:    55 PLHIACLVEM 64
             P+HI  LVE+
Sbjct:   269 PVHIGTLVEL 278

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005680 "anaphase-promoting complex" evidence=IEA

UNIPROTKB|F1P4A5 CDC16 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 164 (62.8 bits), Expect = 3.7e-11, P = 3.7e-11
 Identities = 31/70 (44%), Positives = 46/70 (65%)

Query:     2 IKKYEVPSLSVLPD-------NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL 54
             +KKY  PS +++P+       NLD++V+ AER YY C +K C+  T  V+ +DP+H  CL
Sbjct:   210 LKKYNKPSETLIPESVNGLQENLDVVVSLAERHYYNCDFKMCYKRTSLVMEKDPFHANCL 269

Query:    55 PLHIACLVEM 64
             P+HI  LVE+
Sbjct:   270 PVHIGTLVEL 279

GO:0005680 "anaphase-promoting complex" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0070979 "protein K11-linked ubiquitination" evidence=IEA

FB|FBgn0025781 Cdc16 "Cell division cycle 16 ortholog" [Drosophila melanogaster (taxid:7227)]

 Score = 130 (50.8 bits), Expect = 2.0e-07, P = 2.0e-07
 Identities = 22/46 (47%), Positives = 30/46 (65%)

Query:    18 DMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVE 63
             D+M A AE+ +Y C YK+C  I  ++L  DP+H   L + IACLVE
Sbjct:   360 DLMAAEAEKCFYDCDYKQCLKILNELLKVDPFHNTALTIQIACLVE 405

GO:0005680 "anaphase-promoting complex" evidence=ISS;NAS

GO:0000090 "mitotic anaphase" evidence=NAS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0007049 "cell cycle" evidence=IMP

GO:0030071 "regulation of mitotic metaphase/anaphase transition" evidence=IMP

GO:0045842 "positive regulation of mitotic metaphase/anaphase transition" evidence=IMP

GO:0090302 "mitotic anaphase-promoting complex activity" evidence=IMP

GO:0007067 "mitosis" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	79
KOG1173|consensus	611		99.87
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.87
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.65
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	96.61
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.46
KOG1155|consensus	559		96.43
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	96.43
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.4
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.35
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	96.34
PF13428	44	TPR_14: Tetratricopeptide repeat	96.23
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	95.85
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	95.43
PF13371	73	TPR_9: Tetratricopeptide repeat	94.95
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	94.92
KOG1174|consensus	564		94.91
TIGR02552	135	LcrH_SycD type III secretion low calcium response	94.58
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	94.36
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	94.27
PF13371	73	TPR_9: Tetratricopeptide repeat	94.26
TIGR02552	135	LcrH_SycD type III secretion low calcium response	94.18
PRK15359	144	type III secretion system chaperone protein SscB;	94.15
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	94.13
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	93.77
PRK15359	144	type III secretion system chaperone protein SscB;	92.81
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	92.61
PRK10370	198	formate-dependent nitrite reductase complex subuni	92.56
KOG0624|consensus	504		92.53
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	92.23
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	92.06
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	92.06
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	91.87
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	91.86
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	91.81
KOG2076|consensus	895		91.57
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	91.26
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	91.25
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	91.11
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	91.04
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	90.76
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	90.73
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	90.51
PRK12370	553	invasion protein regulator; Provisional	89.58
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	89.46
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	89.05
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	88.63
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	87.87
PRK11189	296	lipoprotein NlpI; Provisional	87.66
KOG1126|consensus	638		87.64
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	87.26
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	86.29
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	86.17
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	86.07
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	85.8
PRK10370	198	formate-dependent nitrite reductase complex subuni	85.66
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	84.72
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	83.74
KOG0551|consensus	390		83.61
PRK11189	296	lipoprotein NlpI; Provisional	82.63
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	82.41
PRK12370	553	invasion protein regulator; Provisional	82.02
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	81.47
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	80.88
KOG3081|consensus	299		80.64
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	80.59
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	80.26

>KOG1173|consensus

Probab=99.87  E-value=2e-22  Score=162.74  Aligned_cols=67  Identities=51%  Similarity=1.001  Sum_probs=65.9

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCcchhhhhhhcc
Q psy3703          11 SVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSNSKLKKKKKK   77 (79)
Q Consensus        11 ~~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~n~LFl~AHk~   77 (79)
                      .++.+|+||+.++||++|++|+|++|++||+.+|+.||||.+|+|+|||||+|+|++|+||+++|+-
T Consensus       238 ~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~L  304 (611)
T KOG1173|consen  238 IGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKL  304 (611)
T ss_pred             hhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHH
Confidence            8999999999999999999999999999999999999999999999999999999999999999983

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.87  E-value=0.0029  Score=36.16  Aligned_cols=51  Identities=10%  Similarity=0.149  Sum_probs=41.9

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      +|+++....|..++.+++|+++....++.++.||.+..++-.-=-|..+++
T Consensus         1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~   51 (69)
T PF13414_consen    1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG   51 (69)
T ss_dssp             TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC
Confidence            578999999999999999999999999999999998775544444455554

...

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.65  E-value=0.0051  Score=40.05  Aligned_cols=52  Identities=23%  Similarity=0.390  Sum_probs=44.9

Q ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCcc
Q psy3703          17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSN   68 (79)
Q Consensus        17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~n   68 (79)
                      .+++...|+.+...++++++..++++++..||++....-..+-|+..+|...
T Consensus        62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~  113 (146)
T PF03704_consen   62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRA  113 (146)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHH
Confidence            4677888999999999999999999999999999999999999999998754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=96.61  E-value=0.00087  Score=40.29  Aligned_cols=51  Identities=20%  Similarity=0.320  Sum_probs=44.3

Q ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCc
Q psy3703          16 NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKS   67 (79)
Q Consensus        16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~   67 (79)
                      +.++....|..+|.+++|++|+++.++ ++.+|-+..+.-+.--|+++|+.-
T Consensus        24 ~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y   74 (84)
T PF12895_consen   24 NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKY   74 (84)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-H
T ss_pred             hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCH
Confidence            567788899999999999999999999 989998878877887889999864

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.46  E-value=0.0056  Score=34.76  Aligned_cols=43  Identities=26%  Similarity=0.265  Sum_probs=23.3

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          23 NAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        23 ~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      +|..++.+++|++|.++-+++++.+|.+...+=..=-|++++|
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g   45 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQG   45 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC
Confidence            4555555555555555555555555555555544444444444

>KOG1155|consensus

Probab=96.43  E-value=0.01  Score=48.77  Aligned_cols=67  Identities=15%  Similarity=0.182  Sum_probs=64.0

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCcchhhhhhhcc
Q psy3703          11 SVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSNSKLKKKKKK   77 (79)
Q Consensus        11 ~~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~n~LFl~AHk~   77 (79)
                      .|+.++.=+....|-..|.+-||++|..+=+.|++.|||-.+=|-+|=-.||-...+.+|=++||.-
T Consensus       256 ~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v  322 (559)
T KOG1155|consen  256 VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNV  322 (559)
T ss_pred             ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHH
Confidence            6788999999999999999999999999999999999999999999999999999999999999963

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.43  E-value=0.0084  Score=30.34  Aligned_cols=33  Identities=12%  Similarity=0.213  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q psy3703          18 DMMVANAERLYYGCAYKKCFTITEQVLSRDPYH   50 (79)
Q Consensus        18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn   50 (79)
                      ++...++..++.+++|++|.+-.++.|+.||-|
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            567889999999999999999999999999953

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.40  E-value=0.0064  Score=34.53  Aligned_cols=38  Identities=26%  Similarity=0.374  Sum_probs=34.1

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHT   51 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~   51 (79)
                      .+|+++....+..++.+++++++.+.-+++++.+|.|+
T Consensus        28 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen   28 PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            67999999999999999999999999999999999873

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.35  E-value=0.0056  Score=34.77  Aligned_cols=37  Identities=24%  Similarity=0.353  Sum_probs=32.3

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYH   50 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn   50 (79)
                      .+|.++....|+.++.+++|++|.++.++++..+|-+
T Consensus        22 p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~   58 (68)
T PF14559_consen   22 PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN   58 (68)
T ss_dssp             TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence            5689999999999999999999999999999998875

...

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=96.34  E-value=0.016  Score=28.90  Aligned_cols=33  Identities=18%  Similarity=0.241  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q psy3703          18 DMMVANAERLYYGCAYKKCFTITEQVLSRDPYH   50 (79)
Q Consensus        18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn   50 (79)
                      .+....+..++.+++|++|.+..++.++.+|-|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            567788999999999999999999999999954

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.23  E-value=0.0096  Score=32.33  Aligned_cols=37  Identities=14%  Similarity=0.010  Sum_probs=33.9

Q ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCc
Q psy3703          17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTAC   53 (79)
Q Consensus        17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~   53 (79)
                      +++....|+.+..+|+++++.++-+++++.+|-|...
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a   37 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEA   37 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence            5788899999999999999999999999999988654

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=95.85  E-value=0.016  Score=33.01  Aligned_cols=35  Identities=20%  Similarity=0.220  Sum_probs=33.1

Q ss_pred             CCChHHHHHHHHHHHHhC-CHHHHHHHHHHHHhcCC
Q psy3703          14 PDNLDMMVANAERLYYGC-AYKKCFTITEQVLSRDP   48 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~-~f~~c~~it~~iL~~Dp   48 (79)
                      .+|+++...+|..++.++ ++.+|++-.+++++.||
T Consensus        34 p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen   34 PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            568899999999999999 79999999999999998

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=95.43  E-value=0.02  Score=32.39  Aligned_cols=40  Identities=20%  Similarity=0.384  Sum_probs=36.4

Q ss_pred             HHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          27 LYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        27 ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      ++.+++|+++.++.+++++.+|-+.++.-...-|+++.|.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~   40 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQ   40 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC
Confidence            4678999999999999999999999999999999999885

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=94.95  E-value=0.06  Score=30.80  Aligned_cols=39  Identities=21%  Similarity=0.342  Sum_probs=30.7

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTA   52 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~   52 (79)
                      .+++.....+|..++.+++|+++.+..+++++.+|-+..
T Consensus        26 p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~   64 (73)
T PF13371_consen   26 PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPD   64 (73)
T ss_pred             cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence            457777788888888888888888888888888886544

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=94.92  E-value=0.085  Score=30.82  Aligned_cols=42  Identities=19%  Similarity=0.152  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHH
Q psy3703          18 DMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIA   59 (79)
Q Consensus        18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hia   59 (79)
                      |.+--.|--+|-.++|.+|.+.+..+|+.+|-|..+.-++-+
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~   43 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL   43 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            556677888999999999999999999999999988776543

>KOG1174|consensus

Probab=94.91  E-value=0.036  Score=45.43  Aligned_cols=48  Identities=25%  Similarity=0.336  Sum_probs=45.4

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHH
Q psy3703          11 SVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHI   58 (79)
Q Consensus        11 ~~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hi   58 (79)
                      -.|.+|.|++.+.|+-+|+.|++.++..+-++++..|||+...+-+|-
T Consensus       226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya  273 (564)
T KOG1174|consen  226 TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYA  273 (564)
T ss_pred             ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHH
Confidence            568999999999999999999999999999999999999999998874

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=94.58  E-value=0.13  Score=32.30  Aligned_cols=40  Identities=13%  Similarity=-0.016  Sum_probs=23.0

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCch
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL   54 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~L   54 (79)
                      +|+++....|..++.+++|.+|..+.+++++.+|-+....
T Consensus        49 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~   88 (135)
T TIGR02552        49 YNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPY   88 (135)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence            4555556666666666666666666666666555544433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>smart00028 TPR Tetratricopeptide repeats

Probab=94.36  E-value=0.17  Score=22.58  Aligned_cols=32  Identities=16%  Similarity=0.208  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy3703          18 DMMVANAERLYYGCAYKKCFTITEQVLSRDPY   49 (79)
Q Consensus        18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpy   49 (79)
                      ++....|..++..++|+++...-++.++.+|-
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            56678899999999999999999999998874

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=94.27  E-value=0.055  Score=38.60  Aligned_cols=58  Identities=19%  Similarity=0.115  Sum_probs=48.2

Q ss_pred             CCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCcch
Q psy3703          12 VLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSNS   69 (79)
Q Consensus        12 ~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~n~   69 (79)
                      ...+|+.+....|+.+...|+.+++.+.-+++|+.+|-+..++--++-.+++.|...+
T Consensus       141 ~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~  198 (280)
T PF13429_consen  141 AAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDE  198 (280)
T ss_dssp             ---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHH
Confidence            3568999999999999999999999999999999999999999988888988886554

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=94.26  E-value=0.18  Score=28.78  Aligned_cols=43  Identities=16%  Similarity=0.318  Sum_probs=38.4

Q ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          24 AERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        24 Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      ++.++.+.+|+++.+..+++++.+|-+....-..=.|++.+|.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~   44 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGR   44 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhcc
Confidence            4678999999999999999999999988888888888888875

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=94.18  E-value=0.32  Score=30.47  Aligned_cols=49  Identities=12%  Similarity=-0.040  Sum_probs=42.9

Q ss_pred             CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHH
Q psy3703          13 LPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACL   61 (79)
Q Consensus        13 L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL   61 (79)
                      -.+++++....|..++..++++++....+++++.||-+..+.++.-.|.
T Consensus        81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~  129 (135)
T TIGR02552        81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAE  129 (135)
T ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence            3568999999999999999999999999999999999988776665443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=94.15  E-value=0.18  Score=33.47  Aligned_cols=55  Identities=7%  Similarity=0.065  Sum_probs=41.0

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          11 SVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        11 ~~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      -.++-+++....++..++.+++|+++.+...+.+..||.+....-.--.++..+|
T Consensus        18 ~al~~~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g   72 (144)
T PRK15359         18 QLLSVDPETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLK   72 (144)
T ss_pred             HHHHcCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh
Confidence            3456677777788888888888888888888888888887777655555555544

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=94.13  E-value=0.14  Score=25.02  Aligned_cols=32  Identities=19%  Similarity=0.255  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy3703          18 DMMVANAERLYYGCAYKKCFTITEQVLSRDPY   49 (79)
Q Consensus        18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpy   49 (79)
                      |.+...|..++..++++++.++-+++++.-|-
T Consensus         1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            57788999999999999999999999999884

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=93.77  E-value=0.25  Score=26.49  Aligned_cols=51  Identities=20%  Similarity=0.152  Sum_probs=32.8

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      ++.++....|..++.+++++++.+..+++++..|-+..+.-....++...+
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189          32 DNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            344667777777777788888888777777777766644333333444443

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=92.81  E-value=0.55  Score=31.11  Aligned_cols=55  Identities=18%  Similarity=0.141  Sum_probs=45.0

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCcc
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSN   68 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~n   68 (79)
                      .++.++....|..+...++++++.+.-+++++.||-+...+--.--|+.++|...
T Consensus        55 P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~  109 (144)
T PRK15359         55 PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPG  109 (144)
T ss_pred             CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHH
Confidence            4578888899999999999999999999999999987777666666777777543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=92.61  E-value=0.8  Score=24.41  Aligned_cols=36  Identities=17%  Similarity=0.250  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCch
Q psy3703          19 MMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL   54 (79)
Q Consensus        19 vl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~L   54 (79)
                      +....|..++.+++|+++..+.+++++.+|-+..+.
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~   37 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAY   37 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHH
Confidence            567788999999999999999999999988775433

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=92.56  E-value=0.5  Score=33.17  Aligned_cols=53  Identities=17%  Similarity=0.150  Sum_probs=40.7

Q ss_pred             CCChHHHHHHHHHH-HHhCC--HHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          14 PDNLDMMVANAERL-YYGCA--YKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~l-y~~~~--f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      .+|+++....|..+ +..++  +.++.++.++.++.||-+...+-.-=...+++|.
T Consensus       104 P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~  159 (198)
T PRK10370        104 GENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQAD  159 (198)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCC
Confidence            57888888888875 45566  4888888888888888888877666666666664

>KOG0624|consensus

Probab=92.53  E-value=0.25  Score=40.08  Aligned_cols=46  Identities=22%  Similarity=0.299  Sum_probs=43.6

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHH
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIA   59 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hia   59 (79)
                      .||++.....++.+|+-++-+..+.....-|+.||-|-.|.|.|=.
T Consensus       220 ~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKk  265 (504)
T KOG0624|consen  220 QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKK  265 (504)
T ss_pred             ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHH
Confidence            5899999999999999999999999999999999999999999843

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=92.23  E-value=0.54  Score=35.79  Aligned_cols=53  Identities=9%  Similarity=0.157  Sum_probs=33.7

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      .+|.++...+|..+...++|++|+...+++++.+|-+....-..-.+++.+|.
T Consensus        33 P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088         33 PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence            35666777777777777777777777777777777665554444444455543

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=92.06  E-value=0.34  Score=33.32  Aligned_cols=55  Identities=15%  Similarity=0.215  Sum_probs=44.6

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          11 SVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        11 ~~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      -.+.+..|-++.+|+..+.+++|+-+.+|+..++.-||-|...--+-..+|-.|+
T Consensus        64 v~l~GG~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg  118 (141)
T PF14863_consen   64 VELAGGADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG  118 (141)
T ss_dssp             HHHTTCHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            3456788999999999999999999999999999999999887777666666665

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=92.06  E-value=0.82  Score=29.46  Aligned_cols=35  Identities=14%  Similarity=0.026  Sum_probs=16.0

Q ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q psy3703          17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHT   51 (79)
Q Consensus        17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~   51 (79)
                      .++....|..++.+++|+++.+..++.++.+|-+.
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~   65 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDY   65 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence            33444444444444444444444444444444443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=91.87  E-value=0.36  Score=36.12  Aligned_cols=57  Identities=18%  Similarity=0.234  Sum_probs=47.5

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCc
Q psy3703          11 SVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKS   67 (79)
Q Consensus        11 ~~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~   67 (79)
                      ...+.++.++...|-..-.+++|+++-++.++.|+.||.+.++|---|.|-..+|+.
T Consensus       195 ~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  195 DKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             CCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred             hccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence            345678999999999999999999999999999999999999999888888888876

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=91.86  E-value=0.46  Score=36.19  Aligned_cols=47  Identities=9%  Similarity=0.183  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          20 MVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        20 l~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      +..+|..+|.+++|++|.+..++.|+.||-+...+-..-.|+..+|.
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~   51 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGN   51 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            67889999999999999999999999999988877666667776665

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=91.81  E-value=0.52  Score=29.76  Aligned_cols=57  Identities=18%  Similarity=0.187  Sum_probs=41.5

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCch--HHHHHHHHhhCCcchh
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL--PLHIACLVEMNKSNSK   70 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~L--P~hiacL~EL~~~n~L   70 (79)
                      .+|+|.....|+.+...++++++++..-.|++.|+-..+--  -..|+++--||..+.|
T Consensus        19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~pl   77 (90)
T PF14561_consen   19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPL   77 (90)
T ss_dssp             TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChH
Confidence            57889999999999999999999999999999999653322  4566666666665544

>KOG2076|consensus

Probab=91.57  E-value=0.36  Score=42.00  Aligned_cols=55  Identities=18%  Similarity=0.256  Sum_probs=45.3

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          11 SVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        11 ~~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      -.|.-..+=+++.|-.+|.+|++++|.+|+.+|+++||-|....- .||--+|..+
T Consensus       133 ~~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~-tL~~IyEqrG  187 (895)
T KOG2076|consen  133 SKLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYY-TLGEIYEQRG  187 (895)
T ss_pred             cccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHH-HHHHHHHHcc
Confidence            345555778999999999999999999999999999999877653 4677777763

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=91.26  E-value=1.1  Score=26.78  Aligned_cols=50  Identities=16%  Similarity=0.064  Sum_probs=36.7

Q ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC---CchHHHHHHHHhhCC
Q psy3703          17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHT---ACLPLHIACLVEMNK   66 (79)
Q Consensus        17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~---~~LP~hiacL~EL~~   66 (79)
                      .+.....|..++..++|+++....++++..+|-+.   ..+-..-.++.+++.
T Consensus        39 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~   91 (119)
T TIGR02795        39 PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGD   91 (119)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCC
Confidence            46778888889999999999999999988887653   344444456666554

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=91.25  E-value=1.2  Score=26.57  Aligned_cols=50  Identities=12%  Similarity=0.019  Sum_probs=36.0

Q ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC---CchHHHHHHHHhhCC
Q psy3703          17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHT---ACLPLHIACLVEMNK   66 (79)
Q Consensus        17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~---~~LP~hiacL~EL~~   66 (79)
                      +|++...|..++.+++|+++.+..+++++.+|-+.   .+.-..--++++.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   54 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGK   54 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhcc
Confidence            57888889999999999999999999988887654   333333444444443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=91.11  E-value=1.1  Score=28.92  Aligned_cols=43  Identities=19%  Similarity=0.131  Sum_probs=25.3

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHH
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLH   57 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~h   57 (79)
                      ++++.....|..++.+++++++.+..++.++.+|.+...+.+.
T Consensus       167 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  209 (234)
T TIGR02521       167 QRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLG  209 (234)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            3455566666666666666666666666666655544444433

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=91.04  E-value=0.9  Score=35.27  Aligned_cols=55  Identities=9%  Similarity=0.034  Sum_probs=47.2

Q ss_pred             CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCc
Q psy3703          13 LPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKS   67 (79)
Q Consensus        13 L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~   67 (79)
                      -.+|++++...|..++..++|+++.++-+++++.+|-+..+.-...-++...|..
T Consensus       833 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~  887 (899)
T TIGR02917       833 APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRK  887 (899)
T ss_pred             CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCH
Confidence            3578888889999999999999999999999999999887777777777777653

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=90.76  E-value=0.74  Score=38.70  Aligned_cols=54  Identities=13%  Similarity=0.062  Sum_probs=48.7

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCc
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKS   67 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~   67 (79)
                      .++.......|..|+.+.+|++++..+++.|..+|.+...+-..=.||.++|..
T Consensus       117 Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~  170 (694)
T PRK15179        117 PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQS  170 (694)
T ss_pred             CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcch
Confidence            467788888999999999999999999999999999999999999999999864

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=90.73  E-value=0.52  Score=24.46  Aligned_cols=31  Identities=26%  Similarity=0.283  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHH--HHhcCCCC
Q psy3703          20 MVANAERLYYGCAYKKCFTITEQ--VLSRDPYH   50 (79)
Q Consensus        20 l~~~Ae~ly~~~~f~~c~~it~~--iL~~Dpyn   50 (79)
                      +...|+.+..+++|+++.++-++  .+..||.+
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~~   34 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALALARDPED   34 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT-
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcccccC
Confidence            45678999999999999999999  55666654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=90.51  E-value=0.81  Score=36.56  Aligned_cols=40  Identities=10%  Similarity=0.131  Sum_probs=30.8

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCc
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTAC   53 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~   53 (79)
                      .+++|+...++..++..++|+++....+++++.+|-+...
T Consensus       396 p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~  435 (615)
T TIGR00990       396 SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFS  435 (615)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHH
Confidence            4567888888888888888888888888888888866544

>PRK12370 invasion protein regulator; Provisional

Probab=89.58  E-value=1.7  Score=34.75  Aligned_cols=52  Identities=13%  Similarity=0.102  Sum_probs=38.0

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      .+++++....|..++.+++++++.+..++.++.||.+....-.....++.++
T Consensus       369 P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g  420 (553)
T PRK12370        369 PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHT  420 (553)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhcc
Confidence            4567788888888888899999999999999998887665333333444444

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=89.46  E-value=1.3  Score=22.20  Aligned_cols=28  Identities=14%  Similarity=0.191  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHh
Q psy3703          18 DMMVANAERLYYGCAYKKCFTITEQVLS   45 (79)
Q Consensus        18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL~   45 (79)
                      +.+...|..++.+++|+++..+.+++++
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            5677889999999999999888887775

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=89.05  E-value=0.73  Score=38.15  Aligned_cols=45  Identities=29%  Similarity=0.481  Sum_probs=36.3

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          20 MVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        20 l~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      .++.||.+|.+|+|++|+--++-+.+.+| .+.++-+-==||+|-+
T Consensus       465 ~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k  509 (549)
T PF07079_consen  465 FLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENK  509 (549)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHh
Confidence            36789999999999999999999999999 5555555555666644

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=88.63  E-value=0.61  Score=33.23  Aligned_cols=54  Identities=20%  Similarity=0.220  Sum_probs=41.5

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCc
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKS   67 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~   67 (79)
                      .+|+++....|..++..+++++|+.+-++.++.+|-++.++-.+--+|...|..
T Consensus       211 ~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~  264 (280)
T PF13429_consen  211 PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRK  264 (280)
T ss_dssp             HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----
T ss_pred             cCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccc
Confidence            567888888999999999999999999999999999999888888888777754

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=87.87  E-value=2  Score=33.36  Aligned_cols=40  Identities=18%  Similarity=0.232  Sum_probs=24.2

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCch
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL   54 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~L   54 (79)
                      ++++.....|..++.+++|+++.++.+++++.+|-+....
T Consensus       157 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  196 (899)
T TIGR02917       157 RSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDAL  196 (899)
T ss_pred             CChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHH
Confidence            4455666666666666666666666666666666554433

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11189 lipoprotein NlpI; Provisional

Probab=87.66  E-value=2.6  Score=30.91  Aligned_cols=37  Identities=19%  Similarity=0.205  Sum_probs=23.6

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHT   51 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~   51 (79)
                      ++.+....++..++.+++++++.+..++.++.+|-+.
T Consensus       130 ~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~  166 (296)
T PRK11189        130 TYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP  166 (296)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            4455666666666666666666666666666666553

>KOG1126|consensus

Probab=87.64  E-value=1.3  Score=37.39  Aligned_cols=59  Identities=10%  Similarity=0.076  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCcchhhhhhhc
Q psy3703          18 DMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSNSKLKKKKK   76 (79)
Q Consensus        18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~n~LFl~AHk   76 (79)
                      =|+...+..+|...+|.+|-+|=+.+=+.+||...-+=+|=..|.+|+..-+|=++|+-
T Consensus       354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~  412 (638)
T KOG1126|consen  354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQD  412 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHH
Confidence            46777888999999999999999999999999999999999999999999999888863

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=87.26  E-value=2.1  Score=35.16  Aligned_cols=51  Identities=18%  Similarity=0.219  Sum_probs=33.0

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      +++++....|..++.+++++++....+++++.+|-+..+....-.++.++|
T Consensus       282 ~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G  332 (656)
T PRK15174        282 DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVG  332 (656)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence            455666677777777777777777777777777776665555444444444

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=86.29  E-value=0.94  Score=31.91  Aligned_cols=49  Identities=10%  Similarity=0.021  Sum_probs=40.2

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLV   62 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~   62 (79)
                      .+..|.+-+.|-.+|.+++++++-++.+-+...||++..-.---=+|.-
T Consensus        32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q   80 (157)
T PRK15363         32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQ   80 (157)
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            4667889999999999999999999999999999998765544333433

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=86.17  E-value=2.3  Score=20.81  Aligned_cols=31  Identities=13%  Similarity=0.134  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy3703          18 DMMVANAERLYYGCAYKKCFTITEQVLSRDP   48 (79)
Q Consensus        18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dp   48 (79)
                      .+....+..+...++++++.+--++.++.+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            3567889999999999999999999999988

...

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=86.07  E-value=2.7  Score=34.20  Aligned_cols=53  Identities=15%  Similarity=0.095  Sum_probs=43.3

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCc--hHHHHHHHHh
Q psy3703          11 SVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTAC--LPLHIACLVE   63 (79)
Q Consensus        11 ~~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~--LP~hiacL~E   63 (79)
                      ..=.++++.....+-.||..++|+++.+..++.|+.+|.+...  .=..+||.+-
T Consensus        69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya  123 (453)
T PLN03098         69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHA  123 (453)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHH
Confidence            4456778889999999999999999999999999999998754  3355565553

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=85.80  E-value=1.8  Score=24.89  Aligned_cols=48  Identities=13%  Similarity=0.013  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          18 DMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      .++...|..++.+++|++|.+..++.++.-.-..+--|..+.++..++
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg   53 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLG   53 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            567789999999999999999999988652112223344455555444

...

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=85.66  E-value=2.1  Score=30.02  Aligned_cols=41  Identities=10%  Similarity=0.181  Sum_probs=36.3

Q ss_pred             CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCc
Q psy3703          13 LPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTAC   53 (79)
Q Consensus        13 L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~   53 (79)
                      -.+|++++...|-.+|.+++|++|...-+++|+.+|-..+-
T Consensus       140 dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r  180 (198)
T PRK10370        140 DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR  180 (198)
T ss_pred             CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence            35688999999999999999999999999999999975543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=84.72  E-value=3.7  Score=32.85  Aligned_cols=51  Identities=10%  Similarity=-0.009  Sum_probs=30.6

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      +|.......|..++.+++|++|....++.++.+|-+..++-.+--++..+|
T Consensus       431 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g  481 (615)
T TIGR00990       431 DFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQN  481 (615)
T ss_pred             cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence            455556666666666666666666666666666666555544444444444

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=83.74  E-value=4.7  Score=21.56  Aligned_cols=34  Identities=15%  Similarity=0.246  Sum_probs=25.2

Q ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHH--HHHhcCCCC
Q psy3703          17 LDMMVANAERLYYGCAYKKCFTITE--QVLSRDPYH   50 (79)
Q Consensus        17 ~Dvl~~~Ae~ly~~~~f~~c~~it~--~iL~~Dpyn   50 (79)
                      +|-+-+.|-.+|.+++|+++.++=+  -.-..||+|
T Consensus         1 ~e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    1 PEYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            3567788999999999999999954  555666654

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG0551|consensus

Probab=83.61  E-value=2  Score=34.39  Aligned_cols=52  Identities=19%  Similarity=0.312  Sum_probs=45.4

Q ss_pred             CChHHH----HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          15 DNLDMM----VANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        15 ~N~Dvl----~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      +|+||.    ..||-..|.-++|+.|+.=|++.|..||-|..++==---|++||..
T Consensus       113 ~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~  168 (390)
T KOG0551|consen  113 ADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELER  168 (390)
T ss_pred             CCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHH
Confidence            455554    5689999999999999999999999999999998777789999975

>PRK11189 lipoprotein NlpI; Provisional

Probab=82.63  E-value=3.7  Score=30.09  Aligned_cols=53  Identities=17%  Similarity=0.085  Sum_probs=44.5

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      .+++++...++..+...++|+++.+.-.+.++.||-+...+-.--.+++..|.
T Consensus        95 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~  147 (296)
T PRK11189         95 PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGR  147 (296)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence            57889999999999999999999999999999999988776554455555543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=82.41  E-value=3.9  Score=35.55  Aligned_cols=50  Identities=14%  Similarity=0.080  Sum_probs=33.0

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhh
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEM   64 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL   64 (79)
                      +++++....|+.+..+++++++.+.-+++++.+|-|...+--..-++..+
T Consensus       601 ~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~  650 (1157)
T PRK11447        601 PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQ  650 (1157)
T ss_pred             CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHC
Confidence            45667777777777777777777777777777777766543333333333

>PRK12370 invasion protein regulator; Provisional

Probab=82.02  E-value=5.1  Score=32.02  Aligned_cols=53  Identities=9%  Similarity=-0.160  Sum_probs=43.2

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      .+|++.....|..+..+++++++.+..++.++.+|-+....-..-.++..+|.
T Consensus       335 P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~  387 (553)
T PRK12370        335 HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQ  387 (553)
T ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence            56888888999999999999999999999999999998876444444544443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=81.47  E-value=5.5  Score=26.56  Aligned_cols=49  Identities=10%  Similarity=-0.014  Sum_probs=35.4

Q ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      .++....|..++..++|+++.+..++.++.+|-+...+...-.++..++
T Consensus        72 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g  120 (172)
T PRK02603         72 SYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRG  120 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcC
Confidence            4678888888888888888888888888888877655544434444444

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=80.88  E-value=7.1  Score=26.70  Aligned_cols=38  Identities=16%  Similarity=0.182  Sum_probs=24.5

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHT   51 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~   51 (79)
                      ...+|.....+..++.+++|+++...-+++++.+|-+.
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~   67 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSP   67 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch
Confidence            44566666666666666666666666666666666553

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG3081|consensus

Probab=80.64  E-value=5.3  Score=31.08  Aligned_cols=55  Identities=16%  Similarity=0.167  Sum_probs=51.4

Q ss_pred             CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCc
Q psy3703          13 LPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKS   67 (79)
Q Consensus        13 L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~   67 (79)
                      -.-+++++...|-.+-.++||+++-.+-+..|.+|+-.+++|---|-|-..+|+.
T Consensus       203 ~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd  257 (299)
T KOG3081|consen  203 TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD  257 (299)
T ss_pred             cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence            4568999999999999999999999999999999999999999999999999976

>TIGR00540 hemY_coli hemY protein

Probab=80.59  E-value=6.2  Score=30.13  Aligned_cols=52  Identities=13%  Similarity=0.121  Sum_probs=45.3

Q ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCcc
Q psy3703          17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSN   68 (79)
Q Consensus        17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~n   68 (79)
                      ..+....|+.+..+++++++.+..+++++..|-|..++=+......+.|.-.
T Consensus       153 l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~  204 (409)
T TIGR00540       153 ILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQ  204 (409)
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHH
Confidence            3677778999999999999999999999999999998888887777777644

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=80.26  E-value=8.6  Score=27.70  Aligned_cols=47  Identities=13%  Similarity=0.035  Sum_probs=26.4

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          19 MMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        19 vl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      .+...|..+..+++++++.+..++.++.+|-+.......-.+++|.|
T Consensus       116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g  162 (355)
T cd05804         116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQG  162 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence            34445556666666666666666666666666444444333445544

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	79
3hym_B	330	Insights Into Anaphase Promoting Complex Tpr Subdom		8e-13

>pdb|3HYM|B Chain B, Insights Into Anaphase Promoting Complex Tpr Subdomain Assembly From A Cdc26-Apc6 Structure Length = 330

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 30/67 (44%), Positives = 44/67 (65%), Gaps = 7/67 (10%)
Query: 5  YEVPSLSVLPD-------NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLH 57
          Y  PS +V+P+       NLD++V+ AER YY C +K C+ +T  V  +DP+H +CLP+H
Sbjct: 3  YNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKXCYKLTSVVXEKDPFHASCLPVH 62
Query: 58 IACLVEM 64
          I  LVE+
Sbjct: 63 IGTLVEL 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	79
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-09

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 55.8 bits (135), Expect = 3e-11
 Identities = 30/60 (50%), Positives = 45/60 (75%)

Query: 9  SLSVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSN 68
          S+  L +NLD++V+ AER YY C +K C+ +T  V+ +DP+H +CLP+HI  LVE+NK+N
Sbjct: 14 SVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKAN 73

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 50.6 bits (121), Expect = 3e-09
 Identities = 18/60 (30%), Positives = 32/60 (53%)

Query: 9   SLSVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSN 68
           S++ L  + D+++  A+ L+    +     IT ++L  DPY+    PLH+A L E  + N
Sbjct: 297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKN 356

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	79
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.56
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	97.45
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.97
3u4t_A	272	TPR repeat-containing protein; structural genomics	96.85
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	96.65
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	96.56
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.55
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	96.48
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	96.36
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	96.36
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	96.27
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	96.26
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	96.22
2kat_A	115	Uncharacterized protein; NESG, structure, structur	96.22
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.19
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	96.18
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	96.16
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	96.16
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	96.16
2l6j_A	111	TPR repeat-containing protein associated with HSP;	96.16
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	96.07
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	96.02
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	95.98
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	95.96
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	95.88
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	95.88
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	95.85
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	95.84
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	95.81
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	95.8
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	95.69
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	95.68
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	95.64
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	95.58
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	95.5
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	95.44
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	95.42
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	95.42
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	95.4
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	95.4
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.39
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	95.37
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	95.31
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	95.29
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	95.28
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	95.27
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	95.26
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	95.2
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	95.13
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	95.02
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	94.98
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	94.96
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	94.93
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	94.89
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	94.89
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	94.85
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	94.83
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	94.82
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	94.68
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	94.62
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	94.6
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	94.57
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	94.55
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	94.53
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	94.53
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	94.32
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	94.3
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	94.3
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	94.22
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	94.22
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	94.2
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	94.15
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	94.07
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	94.06
3k9i_A	117	BH0479 protein; putative protein binding protein,	94.03
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	94.02
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	94.02
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	93.98
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	93.92
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	93.91
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	93.9
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	93.79
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	93.73
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	93.66
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	93.65
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	93.45
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	93.4
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	93.38
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	93.23
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	93.17
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	93.08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	93.0
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	92.9
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	92.85
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	92.79
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	92.7
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	92.69
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	92.54
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	92.39
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	92.38
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	92.28
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	92.14
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	92.1
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	92.01
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	91.85
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	91.69
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	91.68
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	91.65
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	91.63
2gw1_A	514	Mitochondrial precursor proteins import receptor;	91.61
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	91.47
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	91.45
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	91.39
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	90.67
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	90.35
3u4t_A	272	TPR repeat-containing protein; structural genomics	90.05
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	89.62
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	89.54
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	89.21
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	89.2
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	89.04
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	88.89
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	88.83
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	88.52
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	88.46
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	87.98
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	87.94
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	87.7
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	87.23
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	87.07
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	86.9
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	86.89
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	86.45
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	86.3
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	86.17
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	85.5
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	85.16
1pc2_A	152	Mitochondria fission protein; unknown function; NM	85.03
2kat_A	115	Uncharacterized protein; NESG, structure, structur	85.0
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	84.99
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	84.57
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	84.36
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	84.06
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	83.31
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	82.58
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	82.05
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	81.71

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.56  E-value=1.3e-07  Score=63.09  Aligned_cols=68  Identities=47%  Similarity=0.948  Sum_probs=53.4

Q ss_pred             CCCCCCC-------CCCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCcchhh
Q psy3703           4 KYEVPSL-------SVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSNSKL   71 (79)
Q Consensus         4 ky~~p~~-------~~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~n~LF   71 (79)
                      ||.+|..       .++.+|+|++..+|+.+|.+++|++|.++.+++++.+|.+..++.....|+++++...+-.
T Consensus         2 ~y~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~   76 (330)
T 3hym_B            2 SYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELF   76 (330)
T ss_dssp             ------------------CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcchhhhhHHHHhhchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHH
Confidence            4665555       7889999999999999999999999999999999999999999999999999998755443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=97.45  E-value=0.00027  Score=44.29  Aligned_cols=54  Identities=9%  Similarity=0.140  Sum_probs=44.8

Q ss_pred             CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          13 LPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        13 L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      ||++++|-...+..++.+|+|+++.+.-+++|+.||-+..++-.--.++.+++.
T Consensus         1 ~ge~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~   54 (184)
T 3vtx_A            1 MGETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGL   54 (184)
T ss_dssp             ---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence            689999999999999999999999999999999999998777665556666665

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.97  E-value=0.003  Score=37.07  Aligned_cols=53  Identities=11%  Similarity=0.070  Sum_probs=45.2

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      .+|+++....|..++.+++|+++.+..+++++.||.+....-..=-|+..+|.
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~   56 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDR   56 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTC
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCC
Confidence            46899999999999999999999999999999999988876665556666664

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=96.85  E-value=0.0029  Score=41.21  Aligned_cols=51  Identities=16%  Similarity=0.228  Sum_probs=42.0

Q ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          16 NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      |+|++...|+.++.+++|+++.++.+++++.+|-+..++-.--.|.+++|.
T Consensus         2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~   52 (272)
T 3u4t_A            2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAK   52 (272)
T ss_dssp             ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhh
Confidence            788999999999999999999999999999999988877666667777665

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=96.65  E-value=0.0079  Score=33.69  Aligned_cols=53  Identities=15%  Similarity=0.144  Sum_probs=42.3

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      .+++++....|..++.+++|+++.+..+++++.+|.+..++-..-.++..++.
T Consensus        35 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~   87 (118)
T 1elw_A           35 PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR   87 (118)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhh
Confidence            45788888899999999999999999999999998877766655556666654

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=96.56  E-value=0.0088  Score=35.30  Aligned_cols=53  Identities=9%  Similarity=0.173  Sum_probs=40.5

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      .+|+++...+|..++..++|+++.+..+++++.||-+...+-..--|+..+|.
T Consensus        35 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~   87 (126)
T 3upv_A           35 PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKE   87 (126)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhC
Confidence            45778888888888888888888888888888888876665555555555554

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.55  E-value=0.0033  Score=37.35  Aligned_cols=53  Identities=13%  Similarity=0.123  Sum_probs=46.0

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      .+++++....|..++.+++|+++.+..+++++.+|-+..++-..--|++.+|.
T Consensus        24 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~   76 (117)
T 3k9i_A           24 KDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGR   76 (117)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCC
Confidence            35678889999999999999999999999999999998888777778888775

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=96.48  E-value=0.0096  Score=36.52  Aligned_cols=53  Identities=19%  Similarity=0.242  Sum_probs=35.8

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      .+|+++...+|..++..++|++|.+..+++++.||-+..++-.--.|+.++|.
T Consensus        44 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~   96 (126)
T 4gco_A           44 PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMRE   96 (126)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCCC
Confidence            35667777777777777777777777777777777776655544445555553

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=96.36  E-value=0.014  Score=35.69  Aligned_cols=52  Identities=6%  Similarity=-0.061  Sum_probs=30.3

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      +|+++....+..++.+++|+++.+..+++++.||.+...+-..-.|+..+|.
T Consensus        50 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  101 (142)
T 2xcb_A           50 YDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQLGD  101 (142)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCC
Confidence            4566666666666666666666666666666666665544333334444443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=96.36  E-value=0.016  Score=31.72  Aligned_cols=35  Identities=14%  Similarity=0.239  Sum_probs=17.4

Q ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q psy3703          17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHT   51 (79)
Q Consensus        17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~   51 (79)
                      .++....|..++.+++|+++.+..++.++.+|-+.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~   43 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA   43 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH
Confidence            34444445555555555555555555555555443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=96.27  E-value=0.017  Score=32.13  Aligned_cols=53  Identities=13%  Similarity=0.150  Sum_probs=39.9

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC--CCCchHHHHHHHHhh-CC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPY--HTACLPLHIACLVEM-NK   66 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpy--n~~~LP~hiacL~EL-~~   66 (79)
                      .++.++....|..++.+++|+++.+..+++++.+|-  +..++-..-.++..+ +.
T Consensus        37 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~   92 (112)
T 2kck_A           37 PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGK   92 (112)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHTTCSSC
T ss_pred             cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHhCC
Confidence            456788888888888888888888888888888888  666555555555555 43

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=96.26  E-value=0.0064  Score=39.29  Aligned_cols=50  Identities=12%  Similarity=-0.010  Sum_probs=29.5

Q ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          16 NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      +++.+...|..++.+++|+++.+..+++++.||.+....-.-=.|+.++|
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g   84 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKE   84 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc
Confidence            44566666666666666666666666666666666555444444444444

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=96.22  E-value=0.018  Score=33.81  Aligned_cols=51  Identities=12%  Similarity=-0.047  Sum_probs=27.5

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      +++++....|..++.+++|+++....+++++.+|-+..++-..--|+..++
T Consensus        41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~   91 (137)
T 3q49_B           41 LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEME   91 (137)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHh
Confidence            345555666666666666666666666666666655444333333333333

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=96.22  E-value=0.019  Score=33.48  Aligned_cols=53  Identities=11%  Similarity=0.045  Sum_probs=43.1

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      .+++++....|..++.+++|+++.+..+++++.+|-+....-..--++..+|.
T Consensus        16 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~   68 (115)
T 2kat_A           16 TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGD   68 (115)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCC
Confidence            46889999999999999999999999999999999886655444445555553

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.19  E-value=0.019  Score=32.45  Aligned_cols=37  Identities=19%  Similarity=0.103  Sum_probs=30.5

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYH   50 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn   50 (79)
                      .+++++....|..++..++|+++.+..+++++.+|-+
T Consensus        35 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~   71 (111)
T 2l6j_A           35 PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTA   71 (111)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSST
T ss_pred             CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc
Confidence            4567888888888888888888888888888888877

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=96.18  E-value=0.0079  Score=36.76  Aligned_cols=52  Identities=13%  Similarity=0.220  Sum_probs=42.4

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      .+|+++...+|..++..++|++|.+..++.++.+|-+....+....++..+|
T Consensus        39 p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg   90 (127)
T 4gcn_A           39 PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG   90 (127)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence            4678889999999999999999999999999999988877666554555444

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=96.16  E-value=0.021  Score=33.55  Aligned_cols=53  Identities=15%  Similarity=0.359  Sum_probs=45.8

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      ..+++.....|..++.+++|+++...-+++++.+|-+..++-..-.|+..++.
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~   58 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ   58 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcC
Confidence            35788999999999999999999999999999999987777666667776664

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=96.16  E-value=0.011  Score=36.54  Aligned_cols=52  Identities=12%  Similarity=0.076  Sum_probs=42.1

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      .+.++...+|..++..++|++|...++++|+.||-+..++-.--.|+..+|.
T Consensus        61 ~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~  112 (162)
T 3rkv_A           61 KNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWK  112 (162)
T ss_dssp             THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhc
Confidence            3457888889999999999999999999999999888777666666666664

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=96.16  E-value=0.018  Score=35.65  Aligned_cols=51  Identities=14%  Similarity=-0.034  Sum_probs=29.7

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      +++++....|..++..++|+++.+..+++++.||-+...+-..-.++..++
T Consensus        43 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g   93 (164)
T 3sz7_A           43 ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMA   93 (164)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Confidence            456666666666666666666666666666666665544444333444444

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=96.16  E-value=0.012  Score=33.24  Aligned_cols=52  Identities=10%  Similarity=0.273  Sum_probs=43.2

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      .+.+.....|..++.+++|+++.+.-+++++.+|-+..++-..-.|+..+|.
T Consensus         2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~   53 (111)
T 2l6j_A            2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGE   53 (111)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcC
Confidence            3577888999999999999999999999999999987666555556666664

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=96.07  E-value=0.017  Score=35.84  Aligned_cols=54  Identities=9%  Similarity=-0.169  Sum_probs=42.7

Q ss_pred             CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          13 LPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        13 L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      -.++.++....|..++.+++|+++.+..+++++.||.+..++-.---++..+|.
T Consensus       103 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~  156 (184)
T 3vtx_A          103 NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGL  156 (184)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCC
Confidence            356788999999999999999999999999999999887665444444455553

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=96.02  E-value=0.022  Score=36.72  Aligned_cols=53  Identities=8%  Similarity=0.038  Sum_probs=46.0

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      .+|++.....+..++.+++|+++.+..++.++.||-+...+--.=.|+..+|.
T Consensus        67 P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~  119 (151)
T 3gyz_A           67 FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKA  119 (151)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCC
Confidence            47899999999999999999999999999999999998876655566666665

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=95.98  E-value=0.012  Score=36.01  Aligned_cols=52  Identities=17%  Similarity=0.171  Sum_probs=43.0

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      ++.+.+...|..++.+++|+++.+..+++++.+|.+...+-..-.|+.+++.
T Consensus        16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~   67 (142)
T 2xcb_A           16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGL   67 (142)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhh
Confidence            4567889999999999999999999999999999987766554556666654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=95.96  E-value=0.026  Score=35.30  Aligned_cols=40  Identities=5%  Similarity=-0.164  Sum_probs=22.6

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCch
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL   54 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~L   54 (79)
                      +|+++....+..++.+++|+++.+..+++++.||-+...+
T Consensus        53 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~   92 (148)
T 2vgx_A           53 YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFP   92 (148)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence            4555555555555555666666555555555555554443

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=95.88  E-value=0.016  Score=34.17  Aligned_cols=51  Identities=8%  Similarity=0.156  Sum_probs=43.9

Q ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          16 NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      +.+....+|..++.+++|+++.+.-++.++.+|-+..++-..-.|+..++.
T Consensus         3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~   53 (126)
T 3upv_A            3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS   53 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcC
Confidence            457788999999999999999999999999999988777666667777764

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=95.88  E-value=0.023  Score=32.66  Aligned_cols=53  Identities=13%  Similarity=0.153  Sum_probs=34.2

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      .++.++....|..++.+++|+++.+..+++++.+|-+..++-..-.++.+++.
T Consensus        47 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~   99 (133)
T 2lni_A           47 PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKD   99 (133)
T ss_dssp             TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhh
Confidence            34667777777777777777777777777777777665554444444444443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=95.85  E-value=0.021  Score=35.31  Aligned_cols=55  Identities=16%  Similarity=0.151  Sum_probs=46.6

Q ss_pred             CCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          12 VLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        12 ~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      .-..+.+.+...|..++.+++|+++.+.-+++++.+|-+..++-..-.|++.++.
T Consensus         6 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~   60 (164)
T 3sz7_A            6 APTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQ   60 (164)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC
T ss_pred             hhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccC
Confidence            3456788999999999999999999999999999999987776666667777664

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=95.84  E-value=0.01  Score=33.06  Aligned_cols=53  Identities=13%  Similarity=0.206  Sum_probs=44.0

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      .++.++....|..++.+++|+++...-+++++.+|.+..++-..-.++.+++.
T Consensus         3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~   55 (112)
T 2kck_A            3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLER   55 (112)
T ss_dssp             CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC
T ss_pred             CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccC
Confidence            35778889999999999999999999999999999887766555556666654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=95.81  E-value=0.025  Score=39.33  Aligned_cols=55  Identities=13%  Similarity=0.109  Sum_probs=50.0

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCcc
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSN   68 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~n   68 (79)
                      .+++++..+.|..+..+++|+++.+.-+++|+.||.+..++--.+.++.++|...
T Consensus       197 p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~  251 (291)
T 3mkr_A          197 SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPP  251 (291)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCH
Confidence            4689999999999999999999999999999999999999887777888888753

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=95.80  E-value=0.027  Score=31.38  Aligned_cols=52  Identities=6%  Similarity=0.096  Sum_probs=42.5

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      ++++.....|..++.+++|+++....+++++.+|.+...+-..-.++..++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~   53 (118)
T 1elw_A            2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD   53 (118)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhcc
Confidence            4578889999999999999999999999999999886665555555555554

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=95.69  E-value=0.041  Score=34.31  Aligned_cols=54  Identities=6%  Similarity=-0.094  Sum_probs=42.3

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCc
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKS   67 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~   67 (79)
                      .+|+++....|..++.+++|+++...-+++++.||-+..++-..-.++.+++..
T Consensus        62 p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  115 (150)
T 4ga2_A           62 ERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVT  115 (150)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSS
T ss_pred             CCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Confidence            467888888888888888888888888888888888877665544566677754

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=95.68  E-value=0.048  Score=30.79  Aligned_cols=53  Identities=19%  Similarity=0.128  Sum_probs=34.1

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      .+++++....|..++.+++|+++.+..+++++.+|.+..++-..--++..++.
T Consensus        43 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (131)
T 2vyi_A           43 PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNK   95 (131)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCC
Confidence            34567777777777777777777777777777777665544333334444443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=95.64  E-value=0.051  Score=30.66  Aligned_cols=40  Identities=10%  Similarity=-0.083  Sum_probs=22.0

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCch
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL   54 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~L   54 (79)
                      +++++....|..++..++++++.+.-+++++.+|-+..+.
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  117 (131)
T 2vyi_A           78 AYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYK  117 (131)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHH
Confidence            3455555555555555555555555555555555444333

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=95.58  E-value=0.02  Score=35.87  Aligned_cols=52  Identities=19%  Similarity=0.225  Sum_probs=43.4

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      ++.+.....|..++.+++|+++.+.-+++++.||.+...+-..-.|+.++|.
T Consensus        19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~   70 (148)
T 2vgx_A           19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQ   70 (148)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhh
Confidence            4567888999999999999999999999999999988777554456666654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=95.50  E-value=0.059  Score=30.14  Aligned_cols=51  Identities=12%  Similarity=0.119  Sum_probs=35.4

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      ++.++....|..++..++++++..+.+++++.+|-+...+-...-++.+++
T Consensus        41 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~   91 (125)
T 1na0_A           41 NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG   91 (125)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhc
Confidence            567777788888888888888888888888887766554444444444444

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=95.44  E-value=0.11  Score=32.59  Aligned_cols=55  Identities=13%  Similarity=0.134  Sum_probs=44.7

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCC--chHHHHHHHHhhCCcc
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTA--CLPLHIACLVEMNKSN   68 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~--~LP~hiacL~EL~~~n   68 (79)
                      .+|+++....|..+..+++++++.+.-+++++.+|-+..  ..-....++..+|...
T Consensus       105 P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~  161 (176)
T 2r5s_A          105 PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN  161 (176)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred             CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence            468999999999999999999999999999999997643  4444455666677644

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=95.42  E-value=0.039  Score=36.15  Aligned_cols=40  Identities=20%  Similarity=0.255  Sum_probs=21.1

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCch
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL   54 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~L   54 (79)
                      +|++.....+..++.+++++++....+++++.||-+...+
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~   42 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEAL   42 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            4455555555555555555555555555555555554443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=95.42  E-value=0.06  Score=32.10  Aligned_cols=39  Identities=8%  Similarity=-0.084  Sum_probs=22.6

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCc
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTAC   53 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~   53 (79)
                      ++.++....|..++..++|+++.+..+++++.+|.+..+
T Consensus        45 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~   83 (166)
T 1a17_A           45 SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKG   83 (166)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHH
Confidence            345555566666666666666666666666666555443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=95.40  E-value=0.027  Score=34.46  Aligned_cols=49  Identities=14%  Similarity=0.265  Sum_probs=41.1

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          18 DMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      +....++..+|.+++|+++.+.-++.++.||.+..++-.--.|+.++|.
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~   62 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLME   62 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhcc
Confidence            3455678899999999999999999999999998777666667777775

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=95.40  E-value=0.056  Score=30.91  Aligned_cols=51  Identities=16%  Similarity=0.165  Sum_probs=41.5

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhh
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEM   64 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL   64 (79)
                      .++.++....|..++..++|+++.+..+++++.+|-+....-..--++..+
T Consensus        81 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  131 (133)
T 2lni_A           81 PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ  131 (133)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence            457899999999999999999999999999999998776554444444433

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.39  E-value=0.019  Score=34.67  Aligned_cols=44  Identities=30%  Similarity=0.384  Sum_probs=33.1

Q ss_pred             CCCChHHHHHHHHHHHHhCC---HHHHHHHHHHHHhcCCCCCCchHH
Q psy3703          13 LPDNLDMMVANAERLYYGCA---YKKCFTITEQVLSRDPYHTACLPL   56 (79)
Q Consensus        13 L~~N~Dvl~~~Ae~ly~~~~---f~~c~~it~~iL~~Dpyn~~~LP~   56 (79)
                      .++|+|++...|+.+|.+++   ..++..+.++.|+.||-+...+-+
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~   48 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSL   48 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHH
Confidence            35778888888888877766   578888888888888877666543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=95.37  E-value=0.034  Score=36.79  Aligned_cols=51  Identities=16%  Similarity=-0.022  Sum_probs=25.5

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      +++++....|..++..++|+++.+..+++++.+|.+..++-..-.++..+|
T Consensus        35 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   85 (359)
T 3ieg_A           35 DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQG   85 (359)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcC
Confidence            345555555555555555555555555555555555444433333333333

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=95.31  E-value=0.062  Score=31.11  Aligned_cols=34  Identities=18%  Similarity=0.206  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q psy3703          18 DMMVANAERLYYGCAYKKCFTITEQVLSRDPYHT   51 (79)
Q Consensus        18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~   51 (79)
                      ++....|..++.+++|+++.+..+++++.+|-+.
T Consensus        40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~   73 (129)
T 2xev_A           40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD   73 (129)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc
Confidence            6788888888888888888888888888888774

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=95.29  E-value=0.12  Score=29.00  Aligned_cols=41  Identities=12%  Similarity=0.072  Sum_probs=33.1

Q ss_pred             CCChH-HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCch
Q psy3703          14 PDNLD-MMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL   54 (79)
Q Consensus        14 ~~N~D-vl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~L   54 (79)
                      .++++ +....|..++.+++|+++.+.-+++++.||-+....
T Consensus        31 p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A           31 PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            35667 888888888888888888888888888888777654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=95.28  E-value=0.048  Score=32.98  Aligned_cols=40  Identities=8%  Similarity=-0.122  Sum_probs=21.5

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCch
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL   54 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~L   54 (79)
                      +|.+.....|..+...++++++.+..+++++.||-+...+
T Consensus        49 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   88 (121)
T 1hxi_A           49 EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVH   88 (121)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            3455555555555555555555555555555555554433

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=95.27  E-value=0.083  Score=29.49  Aligned_cols=49  Identities=10%  Similarity=0.083  Sum_probs=29.1

Q ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      .+.....|..++..++|+++.++.+++++.+|.+..++-....++.+.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~   57 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQG   57 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhC
Confidence            4556666666666666666666666666666655544444444444444

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=95.26  E-value=0.042  Score=29.89  Aligned_cols=41  Identities=17%  Similarity=0.302  Sum_probs=37.0

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCch
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL   54 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~L   54 (79)
                      .+++++....|..++..++|+++.+..+++++.+|-+....
T Consensus        40 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~   80 (91)
T 1na3_A           40 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAK   80 (91)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHH
Confidence            46789999999999999999999999999999999876544

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=95.20  E-value=0.036  Score=36.30  Aligned_cols=52  Identities=15%  Similarity=0.060  Sum_probs=41.2

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      +++++....|..+..+++++++.+..+++++.+|-+...+-..-.++.++|.
T Consensus       149 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~  200 (217)
T 2pl2_A          149 DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGK  200 (217)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---
T ss_pred             cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccC
Confidence            7888999999999999999999999999999999887766655566666664

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.13  E-value=0.05  Score=31.83  Aligned_cols=36  Identities=14%  Similarity=0.220  Sum_probs=18.7

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYH   50 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn   50 (79)
                      ++.+.....|..++.+++|+++.+.-+++++.+|.+
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~   61 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP   61 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc
Confidence            444555555555555555555555555555555543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=95.02  E-value=0.08  Score=34.86  Aligned_cols=39  Identities=13%  Similarity=0.152  Sum_probs=32.6

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTA   52 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~   52 (79)
                      .++++.+...|..++.+++|+++.+..+++++.+|.+..
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~   50 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEW   50 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTT
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc
Confidence            467888888888888888888888888888888887743

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=94.98  E-value=0.11  Score=33.40  Aligned_cols=51  Identities=14%  Similarity=0.016  Sum_probs=29.5

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      +++++....|..++..++|+++.+..+++++.+|.+..++-..-.++.++|
T Consensus        75 ~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g  125 (275)
T 1xnf_A           75 DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG  125 (275)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhc
Confidence            455566666666666666666666666666666655555444444444444

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=94.96  E-value=0.088  Score=38.11  Aligned_cols=55  Identities=29%  Similarity=0.575  Sum_probs=50.9

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCcc
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSN   68 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~n   68 (79)
                      .+|+++....|..++.+++++++.++.+++++.+|.+..++-..+.|+.++|...
T Consensus       302 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  356 (597)
T 2xpi_A          302 EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKN  356 (597)
T ss_dssp             GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHH
T ss_pred             CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHH
Confidence            4799999999999999999999999999999999999999999999998888643

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=94.93  E-value=0.042  Score=35.31  Aligned_cols=50  Identities=4%  Similarity=-0.041  Sum_probs=32.2

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhh
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEM   64 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL   64 (79)
                      +++++....|..++.+++|+++.+..+++++.+|-+....+....+.+.+
T Consensus        74 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  123 (228)
T 4i17_A           74 NLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKE  123 (228)
T ss_dssp             SHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence            45667777777777777777777777777777776665444443333333

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=94.89  E-value=0.06  Score=34.98  Aligned_cols=42  Identities=24%  Similarity=0.241  Sum_probs=36.4

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchH
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLP   55 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP   55 (79)
                      .+++++....|..++.+++++++.+..+++++.||-+...+-
T Consensus        85 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~  126 (208)
T 3urz_A           85 PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANI  126 (208)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence            468899999999999999999999999999999998876553

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=94.89  E-value=0.058  Score=30.55  Aligned_cols=37  Identities=16%  Similarity=0.314  Sum_probs=21.1

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHT   51 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~   51 (79)
                      +++++....|..++.+++|+++....+++++.+|-+.
T Consensus        36 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~   72 (131)
T 1elr_A           36 TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR   72 (131)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST
T ss_pred             ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccc
Confidence            3455555556666666666666666666665555433

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.85  E-value=0.082  Score=30.86  Aligned_cols=50  Identities=14%  Similarity=0.046  Sum_probs=42.3

Q ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      .++....|..++.+++|+++.+..+++++.+|-+..++-..--++..++.
T Consensus        65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  114 (148)
T 2dba_A           65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGR  114 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHHHHcCC
Confidence            78899999999999999999999999999999886666555556666664

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=94.83  E-value=0.03  Score=33.47  Aligned_cols=39  Identities=21%  Similarity=0.332  Sum_probs=36.2

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCc
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTAC   53 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~   53 (79)
                      .+.||....|..+|.++++++++...+++|+.+|-|...
T Consensus        44 ~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~   82 (104)
T 2v5f_A           44 DKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA   82 (104)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             cHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence            578999999999999999999999999999999998655

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=94.82  E-value=0.11  Score=30.90  Aligned_cols=33  Identities=15%  Similarity=0.117  Sum_probs=12.9

Q ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Q psy3703          17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDPY   49 (79)
Q Consensus        17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpy   49 (79)
                      .++....|..++.+++++++.+..+++++.+|.
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~   74 (186)
T 3as5_A           42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPD   74 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            333333333333334444443333333333333

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=94.68  E-value=0.059  Score=30.51  Aligned_cols=51  Identities=10%  Similarity=0.069  Sum_probs=41.5

Q ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          16 NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      ..+.....|..++.+++|+++...-+++++.+|.+..++-..-.++.+++.
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~   53 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD   53 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhcc
Confidence            457788899999999999999999999999999887665544455566664

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=94.62  E-value=0.1  Score=29.25  Aligned_cols=36  Identities=14%  Similarity=0.224  Sum_probs=18.6

Q ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q psy3703          16 NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHT   51 (79)
Q Consensus        16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~   51 (79)
                      ++++....|..++.+++++++.++.++.++.+|-+.
T Consensus        68 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  103 (136)
T 2fo7_A           68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA  103 (136)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence            344445555555555555555555555555555443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=94.60  E-value=0.089  Score=29.51  Aligned_cols=46  Identities=11%  Similarity=0.138  Sum_probs=36.3

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCC-chHHHHHHHHhhCC
Q psy3703          21 VANAERLYYGCAYKKCFTITEQVLSRDPYHTA-CLPLHIACLVEMNK   66 (79)
Q Consensus        21 ~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~-~LP~hiacL~EL~~   66 (79)
                      +.+|..++.+++|+++.+..+++++.+|-+.. .+-..=.|+..++.
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~   50 (99)
T 2kc7_A            4 LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGD   50 (99)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCC
Confidence            57899999999999999999999999998866 44443345555554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=94.57  E-value=0.076  Score=36.46  Aligned_cols=54  Identities=15%  Similarity=0.217  Sum_probs=44.8

Q ss_pred             CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          13 LPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        13 L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      +.++.+.+...|..+..+++++++.++.+++|+.||-+...+-..--++.++|.
T Consensus       113 lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~  166 (287)
T 3qou_A          113 LPREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNR  166 (287)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCC
Confidence            567889999999999999999999999999999999987776555556666554

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=94.55  E-value=0.15  Score=30.38  Aligned_cols=40  Identities=13%  Similarity=0.102  Sum_probs=20.7

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCch
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL   54 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~L   54 (79)
                      ++.++....|..++..++++++.+..+++++.+|-+..+.
T Consensus        74 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  113 (186)
T 3as5_A           74 DNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVR  113 (186)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHH
Confidence            3445555555555555555555555555555555444333

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=94.53  E-value=0.12  Score=35.48  Aligned_cols=55  Identities=11%  Similarity=0.058  Sum_probs=45.5

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC--CCchHHHHHHHHhhCCcc
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYH--TACLPLHIACLVEMNKSN   68 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn--~~~LP~hiacL~EL~~~n   68 (79)
                      .+|+++....|..+..+++++++.+.-.++++.||-+  ....-....++-.+|...
T Consensus       216 P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~  272 (287)
T 3qou_A          216 PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD  272 (287)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred             CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence            5789999999999999999999999999999999987  545555555666666543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=94.53  E-value=0.097  Score=37.14  Aligned_cols=53  Identities=13%  Similarity=0.134  Sum_probs=45.2

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      .+|+++....|..++.+++|++|.+..+++++.||-+..++-..-.++..+|.
T Consensus        56 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  108 (537)
T 3fp2_A           56 PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGN  108 (537)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCC
Confidence            46889999999999999999999999999999999888777666667777665

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=94.32  E-value=0.1  Score=33.13  Aligned_cols=51  Identities=10%  Similarity=0.026  Sum_probs=32.5

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      +++++....|..++..++|+++.+.-+++++.+|-+..+.-..-.|...++
T Consensus       120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~  170 (198)
T 2fbn_A          120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLK  170 (198)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHH
Confidence            456666666666666777777766666666666666655555555555543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=94.30  E-value=0.15  Score=32.61  Aligned_cols=34  Identities=9%  Similarity=0.096  Sum_probs=23.5

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDP   48 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dp   48 (79)
                      .|++.+..++..++.+++|+++.+..+++++.+|
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~   38 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN   38 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC
Confidence            3566667777777777777777777777777666

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=94.30  E-value=0.14  Score=32.50  Aligned_cols=49  Identities=14%  Similarity=-0.008  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          18 DMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      ++....|..++..++|++|....+++++.+|.+..++-.--.++..++.
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~  137 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF  137 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccc
Confidence            8889999999999999999999999999999887776555556666664

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=94.22  E-value=0.11  Score=30.03  Aligned_cols=35  Identities=11%  Similarity=-0.054  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCC
Q psy3703          18 DMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTA   52 (79)
Q Consensus        18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~   52 (79)
                      +.+...|..++.+++|+++.+.-+++++.+|.+..
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~   37 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY   37 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc
Confidence            45678899999999999999999999999998773

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=94.22  E-value=0.15  Score=33.67  Aligned_cols=51  Identities=10%  Similarity=0.160  Sum_probs=42.4

Q ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          16 NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      |++.....|..++.+++|+++.+..+++++.+|-+..++-.--.|++.+|.
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~   52 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGK   52 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccC
Confidence            678889999999999999999999999999999887766666666666664

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=94.20  E-value=0.056  Score=33.65  Aligned_cols=51  Identities=6%  Similarity=-0.173  Sum_probs=41.0

Q ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          16 NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      ++......|..++.+++|+++.+..+++++.||-+..+.-.-=-|+..++.
T Consensus        30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~   80 (150)
T 4ga2_A           30 KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN   80 (150)
T ss_dssp             HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence            344557789999999999999999999999999998776555555555554

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=94.15  E-value=0.077  Score=34.45  Aligned_cols=44  Identities=18%  Similarity=0.250  Sum_probs=37.7

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          23 NAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        23 ~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      .|..++.+++|+++.+..+++++.||-+..++-..-.++.++|.
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~  103 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQ  103 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999988776665566666654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=94.07  E-value=0.15  Score=34.88  Aligned_cols=52  Identities=13%  Similarity=0.002  Sum_probs=36.1

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      .+++++...+|..++..++|+++.+..+++++.+|-+...+-..-.++..+|
T Consensus        35 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g   86 (281)
T 2c2l_A           35 PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEME   86 (281)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTT
T ss_pred             CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            3567777788888888888888888888888888877655544334444444

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=94.06  E-value=0.19  Score=31.76  Aligned_cols=51  Identities=8%  Similarity=0.122  Sum_probs=30.0

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      +++++....|..++..++|+++.+..+++++.+|-+..++-.---++..+|
T Consensus       171 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g  221 (258)
T 3uq3_A          171 EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK  221 (258)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHh
Confidence            455666666666666666666666666666666665544433333444444

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=94.03  E-value=0.11  Score=30.48  Aligned_cols=41  Identities=15%  Similarity=0.194  Sum_probs=37.3

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCch
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL   54 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~L   54 (79)
                      .+++++....|..++..++++++.+..++.++.+|-+....
T Consensus        58 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~   98 (117)
T 3k9i_A           58 PNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQ   98 (117)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHH
T ss_pred             CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHH
Confidence            56899999999999999999999999999999999876544

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=94.02  E-value=0.23  Score=27.70  Aligned_cols=51  Identities=10%  Similarity=0.072  Sum_probs=37.0

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      ++.++....|..++.+++++++.++.+++++.+|-+..+.-....++.+.+
T Consensus        33 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   83 (136)
T 2fo7_A           33 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG   83 (136)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred             cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence            567778888888888899999998888888888876554443344444444

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=94.02  E-value=0.2  Score=31.37  Aligned_cols=54  Identities=6%  Similarity=-0.136  Sum_probs=42.7

Q ss_pred             CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          13 LPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        13 L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      +..++++....|..++.+++|+++.+..++.++.+|.+..++-..-.++.+++.
T Consensus        33 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~   86 (213)
T 1hh8_A           33 QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK   86 (213)
T ss_dssp             SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence            345789999999999999999999999999999999876655444445555553

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=93.98  E-value=0.12  Score=31.81  Aligned_cols=49  Identities=8%  Similarity=0.059  Sum_probs=41.8

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHH
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLV   62 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~   62 (79)
                      .+|++....+|..++..++|+++.+..+++++.||-+...+--.++-+.
T Consensus        94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~  142 (162)
T 3rkv_A           94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT  142 (162)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            4688999999999999999999999999999999998855555555443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=93.92  E-value=0.21  Score=31.45  Aligned_cols=35  Identities=11%  Similarity=-0.019  Sum_probs=15.2

Q ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC
Q psy3703          16 NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYH   50 (79)
Q Consensus        16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn   50 (79)
                      ++++....|..++.+++++++.+..+++++.+|-+
T Consensus       124 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~  158 (243)
T 2q7f_A          124 NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND  158 (243)
T ss_dssp             SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred             CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            33444444444444444444444444444444433

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=93.91  E-value=0.19  Score=29.83  Aligned_cols=51  Identities=8%  Similarity=0.143  Sum_probs=41.8

Q ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          16 NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      ..+.....|..++.+++|+++.+..+++++.+|.+..++-..-.|+..++.
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~   62 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC   62 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCC
Confidence            456778899999999999999999999999999887666555556666654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=93.90  E-value=0.11  Score=32.15  Aligned_cols=39  Identities=23%  Similarity=0.043  Sum_probs=19.9

Q ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCch
Q psy3703          16 NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL   54 (79)
Q Consensus        16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~L   54 (79)
                      +.++....|..++.+++++++.+..+++++.+|-+..++
T Consensus        41 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~   79 (225)
T 2vq2_A           41 NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEIN   79 (225)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHH
Confidence            444555555555555555555555555555555444333

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=93.79  E-value=0.22  Score=31.28  Aligned_cols=52  Identities=10%  Similarity=-0.017  Sum_probs=32.1

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      .++.++....|..++..++++++.+..+++++.+|.+..+.-....++..++
T Consensus        54 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~  105 (243)
T 2q7f_A           54 KEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKE  105 (243)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhc
Confidence            3456667777777777777777777777777777765544433333444444

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=93.73  E-value=0.025  Score=35.56  Aligned_cols=36  Identities=11%  Similarity=0.066  Sum_probs=26.1

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHT   51 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~   51 (79)
                      +|+++....|..+..+++++++.+..+++++.+| +.
T Consensus        38 ~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~   73 (176)
T 2r5s_A           38 SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DN   73 (176)
T ss_dssp             TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CH
T ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-Ch
Confidence            5667777777777777777777777777777777 44

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=93.66  E-value=0.2  Score=34.27  Aligned_cols=52  Identities=15%  Similarity=0.363  Sum_probs=44.7

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      ++.+.+...|..++.+++|+++.+.-+++++.+|.+...+-..-.|+..+|.
T Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~   53 (281)
T 2c2l_A            2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ   53 (281)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcC
Confidence            5778899999999999999999999999999999987776666666666664

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=93.65  E-value=0.18  Score=30.22  Aligned_cols=42  Identities=10%  Similarity=0.035  Sum_probs=35.8

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHH
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPL   56 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~   56 (79)
                      .+|+..+.-.+..+|.+++|+++.+.=+++|+.||- ..-.+.
T Consensus        40 p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~   81 (93)
T 3bee_A           40 PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVT   81 (93)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHH
Confidence            467788888999999999999999999999999998 443433

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=93.45  E-value=0.12  Score=35.93  Aligned_cols=51  Identities=8%  Similarity=0.137  Sum_probs=30.4

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      ++++.....|..++.+++|+++.++-+++++.+|-+..++-....|+..+|
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g   74 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMG   74 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCC
Confidence            345556666666666666666666666666666665555444444555444

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=93.40  E-value=0.31  Score=31.08  Aligned_cols=39  Identities=13%  Similarity=0.092  Sum_probs=19.0

Q ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCch
Q psy3703          16 NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL   54 (79)
Q Consensus        16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~L   54 (79)
                      ++++....|..++.+++++++.+..+++++.+|.+...+
T Consensus       174 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  212 (252)
T 2ho1_A          174 QPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSL  212 (252)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence            344444555555555555555555555555555444333

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=93.38  E-value=0.21  Score=30.75  Aligned_cols=47  Identities=13%  Similarity=0.107  Sum_probs=33.7

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHH
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIAC   60 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiac   60 (79)
                      .+++++....|..++..++|+++.+.-+++++.+|-+...+-..-.+
T Consensus        41 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~   87 (177)
T 2e2e_A           41 PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATV   87 (177)
T ss_dssp             CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            45777888888888888888888888888888888765544433333

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=93.23  E-value=0.31  Score=30.06  Aligned_cols=39  Identities=18%  Similarity=0.219  Sum_probs=20.7

Q ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCch
Q psy3703          16 NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL   54 (79)
Q Consensus        16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~L   54 (79)
                      ++++....|..++.+++++++.+..+++++.+|-+..++
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~   45 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAW   45 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHH
Confidence            344555555555555555555555555555555444333

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=93.17  E-value=0.23  Score=30.54  Aligned_cols=39  Identities=15%  Similarity=0.227  Sum_probs=20.4

Q ss_pred             CChHHHHHHHHH-HHHhCCH--HHHHHHHHHHHhcCCCCCCc
Q psy3703          15 DNLDMMVANAER-LYYGCAY--KKCFTITEQVLSRDPYHTAC   53 (79)
Q Consensus        15 ~N~Dvl~~~Ae~-ly~~~~f--~~c~~it~~iL~~Dpyn~~~   53 (79)
                      +|+++....|.. ++.++++  +++.+..+++++.+|.+..+
T Consensus        76 ~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~  117 (177)
T 2e2e_A           76 ENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITA  117 (177)
T ss_dssp             SCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHH
Confidence            345555555555 3455555  55555555555555554433

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=93.08  E-value=0.29  Score=32.83  Aligned_cols=48  Identities=13%  Similarity=0.066  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          18 DMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      +....+|..++.+++|+++.+..+++++.+|-+..++-.--.|+..+|
T Consensus        65 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  112 (368)
T 1fch_A           65 PQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE  112 (368)
T ss_dssp             SSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc
Confidence            344555555555555555555555555555555444443333444443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=93.00  E-value=0.25  Score=34.60  Aligned_cols=51  Identities=12%  Similarity=0.029  Sum_probs=37.0

Q ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          16 NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      |+.+....|..++..++|++|.+..+++++.+|-+..++-.-..++..+|.
T Consensus        38 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~   88 (514)
T 2gw1_A           38 DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGK   88 (514)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhh
Confidence            567777777888888888888888888888877776666555556666654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=92.90  E-value=0.32  Score=33.05  Aligned_cols=46  Identities=9%  Similarity=0.005  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          20 MVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        20 l~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      ....|..++.+++|+++.++.+++++.+|-+..++-..-.++..+|
T Consensus        68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g  113 (365)
T 4eqf_A           68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENE  113 (365)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCC
Confidence            5566666666666666666666666666655444433333344333

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=92.85  E-value=0.37  Score=30.72  Aligned_cols=51  Identities=18%  Similarity=-0.013  Sum_probs=27.9

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      ++.++....|..++..++++++.+..+++++.+|-+..++-....++..++
T Consensus        69 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g  119 (252)
T 2ho1_A           69 SSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQK  119 (252)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHh
Confidence            345556666666666666666666666666666655444333333333333

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=92.79  E-value=0.64  Score=30.34  Aligned_cols=53  Identities=9%  Similarity=-0.083  Sum_probs=39.2

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      .+++++....|..++..++++++.+..+++++.+|-+..++-.---++..+|.
T Consensus       233 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~  285 (330)
T 3hym_B          233 DKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGN  285 (330)
T ss_dssp             TTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTC
T ss_pred             cHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhcc
Confidence            55667888888888888888888888888888888776666555555555554

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=92.70  E-value=0.13  Score=31.05  Aligned_cols=38  Identities=13%  Similarity=0.066  Sum_probs=30.4

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHT   51 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~   51 (79)
                      .+++++....|..+...++++++.+..+++++.+|-+.
T Consensus        82 P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           82 PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence            46889999999999999999999999999999999764

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=92.69  E-value=0.38  Score=31.38  Aligned_cols=51  Identities=10%  Similarity=0.021  Sum_probs=30.0

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      ++.++....|..++..++++++.+..+++++.+|-+..++-....++..+|
T Consensus       170 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  220 (327)
T 3cv0_A          170 NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGN  220 (327)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence            355666666666666666666666666666666665544444444444443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=92.54  E-value=0.28  Score=31.45  Aligned_cols=52  Identities=8%  Similarity=-0.076  Sum_probs=43.2

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      +++++....|..++.+++|+++.+..+++++.+|-+..++-..-.++.++|.
T Consensus        41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~   92 (275)
T 1xnf_A           41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN   92 (275)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccC
Confidence            3678899999999999999999999999999999987766555555555554

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=92.39  E-value=0.26  Score=35.74  Aligned_cols=51  Identities=12%  Similarity=0.067  Sum_probs=33.9

Q ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          16 NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      +.++....|..++.+++|++|.+.++++|+.||-+..++-..-.|+.+++.
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~  322 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKE  322 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccC
Confidence            456667777777777777777777777777777766555444444555543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=92.38  E-value=0.61  Score=30.26  Aligned_cols=35  Identities=9%  Similarity=0.145  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCC
Q psy3703          18 DMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTA   52 (79)
Q Consensus        18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~   52 (79)
                      +.....|..+|.+++|+++.+.-+++++.+|-+..
T Consensus        42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~   76 (225)
T 2yhc_A           42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN   76 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCc
Confidence            56666677777777777777777777777776654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=92.28  E-value=0.32  Score=30.66  Aligned_cols=52  Identities=8%  Similarity=0.170  Sum_probs=42.3

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      ++.++....|..++.+++|+++.+..+++++.+|-+..++-.--.++..+|.
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~  188 (258)
T 3uq3_A          137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMS  188 (258)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCC
Confidence            4567888999999999999999999999999999887655555555555554

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=92.14  E-value=0.5  Score=30.84  Aligned_cols=48  Identities=8%  Similarity=-0.075  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          18 DMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      +....+|..++.+++|+++..+.+++++.+|-+..++-.-..++..++
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~   69 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENE   69 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            344566666666666666666666666666655544443333444443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=92.10  E-value=0.33  Score=29.24  Aligned_cols=45  Identities=16%  Similarity=0.177  Sum_probs=35.7

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          22 ANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        22 ~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      .....+|.+++|+++.+.-++.++.||-+..++---=.|++++|.
T Consensus        13 ~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~   57 (127)
T 4gcn_A           13 DLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKK   57 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhh
Confidence            346679999999999999999999999887665544456666664

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=92.01  E-value=0.46  Score=32.91  Aligned_cols=53  Identities=19%  Similarity=0.041  Sum_probs=42.5

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      .+++++....|..++..++++++.+..+++++.+|-+..++-....++..+|.
T Consensus        57 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  109 (450)
T 2y4t_A           57 PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK  109 (450)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence            45788889999999999999999999999999999886666555556666554

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=91.85  E-value=0.33  Score=34.19  Aligned_cols=51  Identities=14%  Similarity=0.090  Sum_probs=32.7

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      +|++....+|..++..++|+++.+.-+++++.+|-+..+.-..-.++..++
T Consensus       228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~  278 (336)
T 1p5q_A          228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR  278 (336)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            466677777777777777777777777777777766655444333444443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=91.69  E-value=0.58  Score=32.07  Aligned_cols=52  Identities=12%  Similarity=-0.026  Sum_probs=33.0

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      .++.+.....+..++.+++++++.+.-+++++.+|-+...+-.-..++...|
T Consensus        64 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  115 (388)
T 1w3b_A           64 PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG  115 (388)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHS
T ss_pred             CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcC
Confidence            3456666777777777777777777777777777766554444444444444

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=91.68  E-value=0.55  Score=31.84  Aligned_cols=50  Identities=10%  Similarity=0.056  Sum_probs=27.9

Q ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          16 NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      ++++....|..++.+++|+++.+..+++++.+|-+..++-..-.++.++|
T Consensus       212 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  261 (365)
T 4eqf_A          212 DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGD  261 (365)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            45566666666666666666666666666666655544433333444433

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=91.65  E-value=0.5  Score=33.25  Aligned_cols=50  Identities=14%  Similarity=0.034  Sum_probs=42.0

Q ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      .++....|..++.+++|++|.+.++++|+.||-+...+-.---++.+++.
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~  245 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND  245 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence            58899999999999999999999999999999987776555555555554

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=91.63  E-value=0.58  Score=33.09  Aligned_cols=42  Identities=12%  Similarity=0.048  Sum_probs=20.1

Q ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHH
Q psy3703          16 NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLH   57 (79)
Q Consensus        16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~h   57 (79)
                      ++++....|..++..++++++.++.+++++.+|-+..++-..
T Consensus       343 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  384 (537)
T 3fp2_A          343 NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF  384 (537)
T ss_dssp             CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            344444455555555555555555555555554444443333

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=91.61  E-value=0.26  Score=34.53  Aligned_cols=51  Identities=10%  Similarity=0.145  Sum_probs=40.7

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      ++.+.+..+|..++.+++|+++.+.-+++++.+| +..++-.-..|+..+|.
T Consensus         4 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~   54 (514)
T 2gw1_A            4 KYALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGD   54 (514)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTC
T ss_pred             hhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhh
Confidence            3578899999999999999999999999999999 54444444456666654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=91.47  E-value=1.1  Score=27.90  Aligned_cols=38  Identities=8%  Similarity=-0.071  Sum_probs=35.0

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHT   51 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~   51 (79)
                      .+++++....|..++.+++|+++.+..+++++.+|-+.
T Consensus        68 ~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~  105 (213)
T 1hh8_A           68 KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQ  105 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCS
T ss_pred             ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcc
Confidence            46789999999999999999999999999999998766

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=91.45  E-value=0.62  Score=31.22  Aligned_cols=50  Identities=18%  Similarity=0.067  Sum_probs=27.0

Q ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          16 NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      ++++....|..++.+++|+++.+..+++++.+|-+..++-....++..+|
T Consensus       216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g  265 (368)
T 1fch_A          216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGN  265 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcC
Confidence            45555556666666666666666666666666555444433333444443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=91.39  E-value=0.66  Score=31.79  Aligned_cols=50  Identities=10%  Similarity=-0.055  Sum_probs=25.1

Q ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          16 NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      ++.+....|..++.+++++++.+..+++++.+|-+..++-....++...|
T Consensus       236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  285 (388)
T 1w3b_A          236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKG  285 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcC
Confidence            44455555555555555555555555555555555444333333333333

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=90.67  E-value=0.72  Score=34.42  Aligned_cols=51  Identities=8%  Similarity=-0.072  Sum_probs=30.8

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      ++.++....|..++.+++|++|.+..++.++.||-+...+-.--.++.+++
T Consensus        38 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g   88 (477)
T 1wao_1           38 SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG   88 (477)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            456666667777777777777777777777777665554433333333443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=90.35  E-value=0.74  Score=34.07  Aligned_cols=51  Identities=8%  Similarity=-0.114  Sum_probs=29.1

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      ++.+.....|..++.+++|+++.+..++.++.+|-+...+-..-.++.++|
T Consensus        21 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g   71 (568)
T 2vsy_A           21 QDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQ   71 (568)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence            455666666666666666666666666666666665544433333334433

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=90.05  E-value=0.85  Score=29.25  Aligned_cols=35  Identities=9%  Similarity=-0.033  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCch
Q psy3703          20 MVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL   54 (79)
Q Consensus        20 l~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~L   54 (79)
                      ....|..++..++|+++.+..+++++.+|.+..++
T Consensus        77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  111 (272)
T 3u4t_A           77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMY  111 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHH
Confidence            44555555555555555555555555555544433

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=89.62  E-value=0.93  Score=33.37  Aligned_cols=52  Identities=15%  Similarity=0.094  Sum_probs=33.3

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      .+|......+|..++..++|++|.+..+++++.+|-+..+.-..-.++..++
T Consensus       348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~  399 (457)
T 1kt0_A          348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAK  399 (457)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            3567777778888888888888888888888888877766554444444443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=89.54  E-value=0.92  Score=33.58  Aligned_cols=51  Identities=8%  Similarity=-0.009  Sum_probs=28.4

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      ++.+.....|..++.+++|+++.+..++.++.+|-+...+-..-.++.++|
T Consensus        55 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  105 (568)
T 2vsy_A           55 GHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAG  105 (568)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence            455666666666666666666666666666666655444433333333333

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=89.21  E-value=1.2  Score=28.98  Aligned_cols=37  Identities=14%  Similarity=0.032  Sum_probs=34.1

Q ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCc
Q psy3703          17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTAC   53 (79)
Q Consensus        17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~   53 (79)
                      .++....|..++.+++|+++.+..+++++.+|-+...
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~   88 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRV   88 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchh
Confidence            8899999999999999999999999999999977543

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=89.20  E-value=1.1  Score=32.74  Aligned_cols=40  Identities=8%  Similarity=-0.007  Sum_probs=19.4

Q ss_pred             CChHHHHHHHHHHHHhCC-HHHHHHHHHHHHhcCCCCCCch
Q psy3703          15 DNLDMMVANAERLYYGCA-YKKCFTITEQVLSRDPYHTACL   54 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~-f~~c~~it~~iL~~Dpyn~~~L   54 (79)
                      +|.++...++..+...++ ++++++..+++|+.||-+..+.
T Consensus       129 ~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~  169 (382)
T 2h6f_A          129 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW  169 (382)
T ss_dssp             TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHH
Confidence            344444455555555553 5555555555555555444433

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=89.04  E-value=0.56  Score=33.93  Aligned_cols=52  Identities=12%  Similarity=0.078  Sum_probs=44.0

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      .+|.+....+|..++..++|++|.+.-+++++.+|-+..+.-..-.++..++
T Consensus       304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~  355 (370)
T 1ihg_A          304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIK  355 (370)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            4688999999999999999999999999999999998776665555555544

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=88.89  E-value=0.55  Score=34.41  Aligned_cols=39  Identities=8%  Similarity=0.035  Sum_probs=19.2

Q ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCch
Q psy3703          16 NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL   54 (79)
Q Consensus        16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~L   54 (79)
                      |.++...++..+...++|+++.+..+++|+.||-|..+.
T Consensus       165 ~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~  203 (382)
T 2h6f_A          165 NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAW  203 (382)
T ss_dssp             CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHH
Confidence            444444455555555555555555555555555444433

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=88.83  E-value=0.56  Score=33.14  Aligned_cols=36  Identities=17%  Similarity=0.105  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCch
Q psy3703          19 MMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL   54 (79)
Q Consensus        19 vl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~L   54 (79)
                      +....|..++.+++|++|.+.++++|+.||.+..++
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~  267 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKAL  267 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            555666666666677777776677766666655444

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=88.52  E-value=0.99  Score=33.25  Aligned_cols=50  Identities=18%  Similarity=0.087  Sum_probs=41.2

Q ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      ..+...+|..++..++|++|.+.++++|+.||-+...+-.-=.++.+++.
T Consensus       317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~  366 (457)
T 1kt0_A          317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE  366 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccC
Confidence            57888999999999999999999999999999887665444455555553

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=88.46  E-value=0.75  Score=33.90  Aligned_cols=52  Identities=17%  Similarity=0.125  Sum_probs=44.1

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      +++++....|..++.+++|+++.+..++.++.||-+..+.-..-.++..++.
T Consensus       256 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~  307 (474)
T 4abn_A          256 SNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSR  307 (474)
T ss_dssp             GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999999987766555555555553

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=87.98  E-value=1.7  Score=33.74  Aligned_cols=40  Identities=8%  Similarity=0.047  Sum_probs=21.2

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCc
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTAC   53 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~   53 (79)
                      .++.++...+|..++.+++|+++.+..+++++.+|-+...
T Consensus       430 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a  469 (681)
T 2pzi_A          430 SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRL  469 (681)
T ss_dssp             TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHH
T ss_pred             ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHH
Confidence            3445555555555555555555555555555555554433

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=87.94  E-value=0.89  Score=33.47  Aligned_cols=51  Identities=14%  Similarity=0.040  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCcc
Q psy3703          18 DMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSN   68 (79)
Q Consensus        18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~n   68 (79)
                      +++...|+.+...+++.++...+++++..||++....-..+-+|+..|...
T Consensus       172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~  222 (388)
T 2ff4_A          172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQS  222 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence            456678888999999999999999999999999999888888888887643

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=87.70  E-value=1.1  Score=28.94  Aligned_cols=52  Identities=13%  Similarity=0.118  Sum_probs=39.7

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC---CchHHHHHHHHhhCC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHT---ACLPLHIACLVEMNK   66 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~---~~LP~hiacL~EL~~   66 (79)
                      .+++.+..+|..++.+++|+++.+.-+++++.+|.+.   ..+-.---|++.+|.
T Consensus         2 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~   56 (225)
T 2yhc_A            2 NPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNAD   56 (225)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCC
Confidence            4678899999999999999999999999999999765   333333334444443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=87.23  E-value=1.5  Score=35.16  Aligned_cols=52  Identities=12%  Similarity=-0.039  Sum_probs=36.5

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      ++.+.....|..+..+++++++.+.-++.|+.||-+...+--...++.+++.
T Consensus       109 ~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~  160 (723)
T 4gyw_A          109 AFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD  160 (723)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence            5667777777777777777777777777777777776666555555555554

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=87.07  E-value=0.98  Score=35.07  Aligned_cols=56  Identities=13%  Similarity=-0.072  Sum_probs=47.6

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCcch
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSNS   69 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~n~   69 (79)
                      .+|.++...++..++.+++|+++.+.-+++++.||-+...+-..-.++.++|...+
T Consensus       464 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~  519 (681)
T 2pzi_A          464 GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE  519 (681)
T ss_dssp             CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH
Confidence            46889999999999999999999999999999999998877666666777765433

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=86.90  E-value=0.67  Score=37.15  Aligned_cols=40  Identities=13%  Similarity=0.008  Sum_probs=22.6

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCch
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL   54 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~L   54 (79)
                      +|.|.+...|..+..+++|+++.+.-++.|+.||-+..++
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~   46 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAH   46 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH
Confidence            3455555555556666666666666666666655554443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=86.89  E-value=0.72  Score=26.47  Aligned_cols=38  Identities=8%  Similarity=-0.104  Sum_probs=33.5

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHT   51 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~   51 (79)
                      .+++++....|..++..++++++.+.-++.++.+|-+.
T Consensus        38 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~   75 (100)
T 3ma5_A           38 PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG   75 (100)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence            46788999999999999999999999999998876543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=86.45  E-value=1.4  Score=28.85  Aligned_cols=43  Identities=19%  Similarity=0.189  Sum_probs=38.3

Q ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHH
Q psy3703          16 NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHI   58 (79)
Q Consensus        16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hi   58 (79)
                      +-|-+...|=-+|..++|.+|..-+..+|+.+|-|....-+.-
T Consensus        73 ~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~  115 (126)
T 1nzn_A           73 QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELER  115 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            5578888999999999999999999999999999988776654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=86.30  E-value=1.6  Score=32.11  Aligned_cols=52  Identities=15%  Similarity=-0.006  Sum_probs=44.0

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC--CCCCchHHHHHHHHhhCC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDP--YHTACLPLHIACLVEMNK   66 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dp--yn~~~LP~hiacL~EL~~   66 (79)
                      .+...+.-.|..++..+++++|++++.+.++.+|  .+.++.-+-+-++..++.
T Consensus        98 ~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r  151 (310)
T 3mv2_B           98 NSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNN  151 (310)
T ss_dssp             CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTC
T ss_pred             CCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCC
Confidence            5567778899999999999999999999999998  777777777777777664

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=86.17  E-value=0.95  Score=33.34  Aligned_cols=39  Identities=8%  Similarity=0.116  Sum_probs=20.2

Q ss_pred             CChHHHHHHHHHHHHhCCH-HHHHHHHHHHHhcCCCCCCc
Q psy3703          15 DNLDMMVANAERLYYGCAY-KKCFTITEQVLSRDPYHTAC   53 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f-~~c~~it~~iL~~Dpyn~~~   53 (79)
                      ++.++...+|..++.+++| ++|.+..+++++.||.+..+
T Consensus       100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a  139 (474)
T 4abn_A          100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEA  139 (474)
T ss_dssp             CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHH
T ss_pred             hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHH
Confidence            3445555555555555555 55555555555555544433

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=85.50  E-value=2.4  Score=31.54  Aligned_cols=47  Identities=11%  Similarity=0.038  Sum_probs=40.8

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHH
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIAC   60 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiac   60 (79)
                      .++++.....|..++.+++|+++.+..+++++.+|-+..+.-..-.+
T Consensus        71 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~  117 (477)
T 1wao_1           71 KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC  117 (477)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            46788999999999999999999999999999999988866554444

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=85.16  E-value=2.5  Score=30.45  Aligned_cols=51  Identities=6%  Similarity=-0.117  Sum_probs=26.7

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      +++++....+..++..++++++.++-+++++.+|-+....-..+.++...|
T Consensus       371 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  421 (597)
T 2xpi_A          371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEG  421 (597)
T ss_dssp             TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            345555555555555555555555555555555554444444444444433

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=85.03  E-value=0.97  Score=30.34  Aligned_cols=43  Identities=19%  Similarity=0.228  Sum_probs=37.4

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHH
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLH   57 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~h   57 (79)
                      ++.|-+...|--+|..++|.+|.+.++++|+.+|-|....-+.
T Consensus        69 ~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk  111 (152)
T 1pc2_A           69 EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  111 (152)
T ss_dssp             HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            3578888899999999999999999999999999987765543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=85.00  E-value=1.1  Score=25.68  Aligned_cols=38  Identities=11%  Similarity=-0.177  Sum_probs=33.9

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHT   51 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~   51 (79)
                      .++.++....|..+..+++++++...-+++++.+|-+.
T Consensus        50 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~   87 (115)
T 2kat_A           50 PTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRG   87 (115)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence            46788999999999999999999999999999888544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=84.99  E-value=0.91  Score=32.02  Aligned_cols=42  Identities=7%  Similarity=-0.116  Sum_probs=30.5

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchH
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLP   55 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP   55 (79)
                      .+|......+|..++..++|++|.+..+++++.+|-+..+.-
T Consensus       261 p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~  302 (338)
T 2if4_A          261 EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRR  302 (338)
T ss_dssp             TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHH
Confidence            478899999999999999999999999999999998876544

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=84.57  E-value=1.7  Score=27.86  Aligned_cols=37  Identities=11%  Similarity=0.040  Sum_probs=32.0

Q ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCC
Q psy3703          16 NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTA   52 (79)
Q Consensus        16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~   52 (79)
                      +.+.+...|+.++.+++|+++....+++++.+|-+..
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~   40 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK   40 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHH
Confidence            3566788899999999999999999999999888653

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=84.36  E-value=3.5  Score=27.90  Aligned_cols=52  Identities=13%  Similarity=0.112  Sum_probs=36.5

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCC-chHHHHHHHHhhC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTA-CLPLHIACLVEMN   65 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~-~LP~hiacL~EL~   65 (79)
                      .++.++-...|..+..+++++++.++-+++++.+|-+.. +.-.+..++...|
T Consensus        96 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~  148 (308)
T 2ond_A           96 KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAE  148 (308)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhc
Confidence            456777778888888888888888888888888887765 4444444444443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=84.06  E-value=1.9  Score=28.82  Aligned_cols=35  Identities=9%  Similarity=0.114  Sum_probs=31.6

Q ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCC
Q psy3703          17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHT   51 (79)
Q Consensus        17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~   51 (79)
                      .+.+.+.+..+|..++|+++.+-.++.|+.||-++
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~   45 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMP   45 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCc
Confidence            46778899999999999999999999999999853

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=83.31  E-value=2  Score=28.63  Aligned_cols=44  Identities=7%  Similarity=0.008  Sum_probs=38.2

Q ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHH
Q psy3703          16 NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIA   59 (79)
Q Consensus        16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hia   59 (79)
                      .-|-+.-.|--+|..++|.+|...+..+|+.+|-|..+.-+.-+
T Consensus        77 ~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~  120 (134)
T 3o48_A           77 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM  120 (134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            35777888889999999999999999999999999988766543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=82.58  E-value=2.5  Score=28.47  Aligned_cols=44  Identities=7%  Similarity=0.011  Sum_probs=38.4

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHH
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHI   58 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hi   58 (79)
                      +.-|-+--.|--+|..++|.+|...+..+|+.+|-|....-+.-
T Consensus        75 ~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~  118 (144)
T 1y8m_A           75 RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  118 (144)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            45677888899999999999999999999999999988776653

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=82.05  E-value=4  Score=27.32  Aligned_cols=40  Identities=10%  Similarity=0.054  Sum_probs=35.0

Q ss_pred             CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCC
Q psy3703          13 LPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTA   52 (79)
Q Consensus        13 L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~   52 (79)
                      .......+...|+.++.+++|+++....+++++.+|-+..
T Consensus         5 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~   44 (406)
T 3sf4_A            5 MEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK   44 (406)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH
T ss_pred             HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHH
Confidence            3566778899999999999999999999999999987654

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=81.71  E-value=1.8  Score=27.83  Aligned_cols=36  Identities=14%  Similarity=0.156  Sum_probs=31.4

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Q psy3703          11 SVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSR   46 (79)
Q Consensus        11 ~~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~   46 (79)
                      ..-.++.+++...|..++.+++|+++.++.+++++.
T Consensus        21 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~   56 (311)
T 3nf1_A           21 YEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALED   56 (311)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            344566788999999999999999999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	79
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.58
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	96.27
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	96.27
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	96.21
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	95.93
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	95.93
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	95.88
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	95.82
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	95.5
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	95.42
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	95.4
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	95.3
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	95.28
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	95.19
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	94.99
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	94.99
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	94.91
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	94.84
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	94.71
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	94.46
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	94.43
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	94.37
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	93.93
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	93.85
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	93.73
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	92.2
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	91.57
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	90.67
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	90.36
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	90.14
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	88.66
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	87.87
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	87.42
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	87.39
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	86.17
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	84.77
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	80.21
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	80.09

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.0015  Score=39.27  Aligned_cols=52  Identities=13%  Similarity=0.240  Sum_probs=45.2

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      ++|+++...+|..++..++|++|...+++.++.||-+....+..--++..+|
T Consensus        35 p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_          35 PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            4689999999999999999999999999999999999998886555555554

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.0047  Score=36.37  Aligned_cols=40  Identities=10%  Similarity=0.057  Sum_probs=23.5

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCch
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL   54 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~L   54 (79)
                      +++.+...+|..++.+++|+++....+++++.||-+...+
T Consensus        35 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   74 (117)
T d1elwa_          35 HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGY   74 (117)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cchhhhhcccccccccccccccchhhhhHHHhccchhhHH
Confidence            4555555566666666666666666666666666555544

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.0015  Score=41.90  Aligned_cols=53  Identities=9%  Similarity=0.130  Sum_probs=39.8

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      .+|++++...|..++..++|++|.+..+++++.+|.+..++-.--.++.++|.
T Consensus        30 p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~   82 (388)
T d1w3ba_          30 PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcc
Confidence            46788888888888888888888888888888888776665544455566654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.0066  Score=38.73  Aligned_cols=46  Identities=17%  Similarity=0.190  Sum_probs=37.0

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          21 VANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        21 ~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      +..|..+|.+|+|++|.++.+++++.||-+..++-.--.++.++|.
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~   48 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRR   48 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            3578889999999999999999999999888776655556666664

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.013  Score=34.39  Aligned_cols=50  Identities=6%  Similarity=0.078  Sum_probs=39.7

Q ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      +.-+..++..+|.+++|+++....+++|+.||.+..++-..=.|+.+++.
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~   52 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGD   52 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhccccccccccc
Confidence            34467788899999999999999999999999888777666666666664

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.0046  Score=35.52  Aligned_cols=40  Identities=20%  Similarity=0.299  Sum_probs=36.0

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCch
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL   54 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~L   54 (79)
                      +..|++...|..++.+++|+++.+..+++|+.||-|..++
T Consensus        44 ~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_          44 DKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence            4578999999999999999999999999999999987543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.88  E-value=0.0071  Score=38.82  Aligned_cols=52  Identities=13%  Similarity=0.050  Sum_probs=47.2

Q ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCCcc
Q psy3703          17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNKSN   68 (79)
Q Consensus        17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~~n   68 (79)
                      .+.....|+.+...+++++++..++++++.||++....-..+-+++.+|...
T Consensus        67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~  118 (179)
T d2ff4a2          67 VLAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQS  118 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHH
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHH
Confidence            4678889999999999999999999999999999999988888998888654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.82  E-value=0.014  Score=35.25  Aligned_cols=53  Identities=13%  Similarity=0.003  Sum_probs=36.8

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      .+|+++...+|..++..++|++|....++.++.||-+..++=..--+++.+|.
T Consensus        35 p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~~   87 (201)
T d2c2la1          35 PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMES   87 (201)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCCC
Confidence            46777777888888888888888888888888888776665433334444443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.50  E-value=0.015  Score=35.63  Aligned_cols=50  Identities=12%  Similarity=0.070  Sum_probs=34.1

Q ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      ..+...+|..++..++|++|+..++++|+.||-+..++---=-+++.++.
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~  126 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKE  126 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccC
Confidence            44556677777778888888888888888888777665444445555543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.016  Score=36.02  Aligned_cols=44  Identities=14%  Similarity=0.024  Sum_probs=33.5

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHH
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLH   57 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~h   57 (79)
                      .+|++.+..+|..++..++|++|...-+++++.||.|..+....
T Consensus        93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l  136 (170)
T d1p5qa1          93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQL  136 (170)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred             ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            35777888888888888888888888888888888776665543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.40  E-value=0.026  Score=34.09  Aligned_cols=51  Identities=16%  Similarity=0.375  Sum_probs=41.7

Q ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          16 NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      +..-+......+|.+++|++|...-+++|+.||-+..++-.-=.|+..+|.
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~   53 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQ   53 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhh
Confidence            445567889999999999999999999999999987766655566666664

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.30  E-value=0.028  Score=33.93  Aligned_cols=39  Identities=8%  Similarity=-0.089  Sum_probs=16.7

Q ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCch
Q psy3703          16 NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL   54 (79)
Q Consensus        16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~L   54 (79)
                      |++....+|..++..+++++|....++.|+.||-+...+
T Consensus        43 ~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~   81 (159)
T d1a17a_          43 NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGY   81 (159)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHH
Confidence            334444444444444444444444444444444444333

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=95.28  E-value=0.036  Score=34.50  Aligned_cols=53  Identities=15%  Similarity=0.080  Sum_probs=36.4

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      .+++++...+|..+..+++|++|.+..+++++.||.+..+.-----++..+|.
T Consensus        68 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~  120 (259)
T d1xnfa_          68 PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGR  120 (259)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhh
Confidence            36777788888888888888888888888888888776654322234444443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.19  E-value=0.021  Score=34.55  Aligned_cols=47  Identities=9%  Similarity=0.156  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          20 MVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        20 l~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      +..++..+|.+++|++|.+.-+++++.||-+....-.--.|++++|.
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~   59 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTEC   59 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccc
Confidence            45677789999999999999999999999988877666668888875

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=94.99  E-value=0.031  Score=34.39  Aligned_cols=38  Identities=18%  Similarity=0.131  Sum_probs=19.9

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTA   52 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~   52 (79)
                      +|++....+|..++..++|++|.+..+++++.||-|..
T Consensus        96 ~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~  133 (168)
T d1kt1a1          96 ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA  133 (168)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            44555555555555555555555555555555555443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.99  E-value=0.031  Score=34.05  Aligned_cols=48  Identities=15%  Similarity=-0.011  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          19 MMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        19 vl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      +...+|..++..++|++|++.++++|+.||-+..++=----|+..+|.
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~  116 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGF  116 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred             HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCC
Confidence            344577778888888888888888888888887776666666666664

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=94.91  E-value=0.018  Score=35.21  Aligned_cols=51  Identities=10%  Similarity=0.017  Sum_probs=42.5

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhh
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEM   64 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL   64 (79)
                      .+|......+|..++..++|++|....+++++.||-|..+.-..-.|.-.|
T Consensus        98 p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1          98 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            467889999999999999999999999999999999987765544443333

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.84  E-value=0.022  Score=34.35  Aligned_cols=44  Identities=18%  Similarity=0.148  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHH
Q psy3703          18 DMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACL   61 (79)
Q Consensus        18 Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL   61 (79)
                      |.+...|-.++..|+|++|.+..+++|+.||-|.....+--.+.
T Consensus        73 ~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~  116 (122)
T d1nzna_          73 DYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID  116 (122)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            57788999999999999999999999999999988776654443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=94.71  E-value=0.027  Score=34.70  Aligned_cols=48  Identities=17%  Similarity=0.065  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          19 MMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        19 vl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      +...+|.-++..++|.+|++.++++|+.||-|..++=..--|+.++|.
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~  113 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNE  113 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCC
Confidence            455689999999999999999999999999998888777778888875

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.46  E-value=0.049  Score=33.64  Aligned_cols=48  Identities=13%  Similarity=0.010  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          19 MMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        19 vl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      +...+|..++.+++|++|...++++|+.||-+..++-..=-|+..+|.
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~  111 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVND  111 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhh
Confidence            345678889999999999999999999999998888666666777764

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.43  E-value=0.057  Score=34.66  Aligned_cols=46  Identities=13%  Similarity=0.109  Sum_probs=30.1

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          21 VANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        21 ~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      ..+|..++.+|+|+++.+.-+++++.||.+..++-.--.|..++|.
T Consensus        23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~   68 (323)
T d1fcha_          23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ   68 (323)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            4567777777777777777777777777766665554455555543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.37  E-value=0.051  Score=34.30  Aligned_cols=53  Identities=6%  Similarity=-0.129  Sum_probs=44.1

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      ..|+.+...++..++.+++|++|.+..++.++.||.+..+.---=.|..++|.
T Consensus        33 ~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~   85 (192)
T d1hh8a_          33 DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK   85 (192)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcc
Confidence            46788999999999999999999999999999999887655544445557765

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.93  E-value=0.069  Score=34.22  Aligned_cols=40  Identities=10%  Similarity=0.035  Sum_probs=23.4

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCch
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL   54 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~L   54 (79)
                      +++++....|..++.+++|+++.+..+++++.+|-+..++
T Consensus       204 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~  243 (323)
T d1fcha_         204 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR  243 (323)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             ccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHH
Confidence            4555555666666666666666666666666666554433

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=93.85  E-value=0.046  Score=33.31  Aligned_cols=43  Identities=14%  Similarity=0.083  Sum_probs=38.6

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHH
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPL   56 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~   56 (79)
                      .+|++....+|..++..++|++|.+.-+++++.||-|..+.=.
T Consensus       108 p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~  150 (169)
T d1ihga1         108 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAE  150 (169)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            5788999999999999999999999999999999998765433

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=93.73  E-value=0.055  Score=31.27  Aligned_cols=45  Identities=9%  Similarity=-0.020  Sum_probs=27.8

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          21 VANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        21 ~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      ...+..++.+++|+++...-+++++.+|.+..++-.-=.|+.+++
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~   64 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENE   64 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhh
Confidence            456667777777777777777777777766555543333333333

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=92.20  E-value=0.094  Score=30.20  Aligned_cols=52  Identities=8%  Similarity=-0.078  Sum_probs=43.6

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      .++++....++..+...++++++...-+++++.||-+..++-.---|..++|
T Consensus        47 p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          47 PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence            4689999999999999999999999999999999999877755444454444

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=91.57  E-value=0.19  Score=30.95  Aligned_cols=51  Identities=8%  Similarity=-0.095  Sum_probs=41.2

Q ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          16 NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      +.++...++..++.+|+|+++.+.-++.|+.||-+..++-.-=.|..++|.
T Consensus        36 ~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~   86 (259)
T d1xnfa_          36 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGN   86 (259)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHH
Confidence            456888899999999999999999999999999988776544444445543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.67  E-value=0.26  Score=28.75  Aligned_cols=44  Identities=11%  Similarity=0.152  Sum_probs=38.0

Q ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhCC
Q psy3703          23 NAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMNK   66 (79)
Q Consensus        23 ~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~~   66 (79)
                      ....+|.+++|+++.+.-+++|+.||-+..++---=.|+..++.
T Consensus        10 ~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~   53 (128)
T d1elra_          10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGD   53 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCc
Confidence            45679999999999999999999999988877777777777775

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=90.36  E-value=0.32  Score=29.86  Aligned_cols=36  Identities=8%  Similarity=-0.065  Sum_probs=31.0

Q ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCC
Q psy3703          17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTA   52 (79)
Q Consensus        17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~   52 (79)
                      .++..-+|+.++.+|+++++.++.++.|+.+|-+..
T Consensus        12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~   47 (366)
T d1hz4a_          12 AEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF   47 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCc
Confidence            456667899999999999999999999999987654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.14  E-value=0.14  Score=30.46  Aligned_cols=37  Identities=14%  Similarity=0.061  Sum_probs=30.4

Q ss_pred             CCChHHHHHHHHHHHH---hCCHHHHHHHHHHHHhcCCCC
Q psy3703          14 PDNLDMMVANAERLYY---GCAYKKCFTITEQVLSRDPYH   50 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~---~~~f~~c~~it~~iL~~Dpyn   50 (79)
                      .+++++....|..+..   ..+++++.++.+++|+.||.+
T Consensus        30 p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~   69 (122)
T d1nzna_          30 SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKE   69 (122)
T ss_dssp             CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHH
T ss_pred             CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCc
Confidence            4688999999999886   446677999999999999863

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.66  E-value=0.36  Score=30.10  Aligned_cols=39  Identities=5%  Similarity=-0.012  Sum_probs=34.7

Q ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchH
Q psy3703          17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLP   55 (79)
Q Consensus        17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP   55 (79)
                      -|-+.-.|--+|..++|.+|.+.+.++|+.||-|....-
T Consensus        73 rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~  111 (124)
T d2pqrb1          73 RECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  111 (124)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence            377788888999999999999999999999999987643

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.87  E-value=0.26  Score=27.60  Aligned_cols=37  Identities=14%  Similarity=-0.013  Sum_probs=30.7

Q ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCc
Q psy3703          17 LDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTAC   53 (79)
Q Consensus        17 ~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~   53 (79)
                      .|-.......+|.+++|++|...-++.|+.+|-+...
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~   41 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEIS   41 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhcc
Confidence            4556677889999999999999999999988766544

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.42  E-value=0.35  Score=32.20  Aligned_cols=41  Identities=10%  Similarity=0.024  Sum_probs=31.0

Q ss_pred             CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCch
Q psy3703          14 PDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACL   54 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~L   54 (79)
                      .+|.++...++..+...++|+++++.+++.|+.||.|..+.
T Consensus       143 p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~  183 (315)
T d2h6fa1         143 AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVW  183 (315)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHH
T ss_pred             hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHH
Confidence            45677777777777778888888888888888888776654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.39  E-value=0.39  Score=31.97  Aligned_cols=51  Identities=8%  Similarity=0.033  Sum_probs=27.5

Q ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          15 DNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        15 ~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      +|.++...++..+...++++++++..+++++.||-|..+.----.++.+++
T Consensus       110 ~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~  160 (315)
T d2h6fa1         110 KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFK  160 (315)
T ss_dssp             TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             hhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHH
Confidence            445555555555555555555555555555555555554444444444443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.17  E-value=0.52  Score=28.21  Aligned_cols=52  Identities=15%  Similarity=0.037  Sum_probs=39.1

Q ss_pred             CCChHHHHHHHHHHHHh----------CCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          14 PDNLDMMVANAERLYYG----------CAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        14 ~~N~Dvl~~~Ae~ly~~----------~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      .+|+|++...+..++..          .+|+++.+.-+++++.||-+..++=.-=.++.+++
T Consensus        28 P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g   89 (145)
T d1zu2a1          28 PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFA   89 (145)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcc
Confidence            57899999999988854          55688999999999999998877643223333443

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.77  E-value=0.63  Score=34.27  Aligned_cols=55  Identities=13%  Similarity=0.220  Sum_probs=45.9

Q ss_pred             CCCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCCchHHHHHHHHhhC
Q psy3703          11 SVLPDNLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTACLPLHIACLVEMN   65 (79)
Q Consensus        11 ~~L~~N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~~LP~hiacL~EL~   65 (79)
                      -.+....|-++.+|+..|.+++|+-|.+|+..++.-||-|...--+-..+|-.|+
T Consensus       424 v~~~GG~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~  478 (505)
T d2cfua2         424 VEYMGGAERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG  478 (505)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            3456678999999999999999999999999999999999886666555555554

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=80.21  E-value=1.1  Score=26.45  Aligned_cols=33  Identities=9%  Similarity=0.135  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCC
Q psy3703          20 MVANAERLYYGCAYKKCFTITEQVLSRDPYHTA   52 (79)
Q Consensus        20 l~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~   52 (79)
                      .++++...|.+++|+++..-.++.|+.+|-+.+
T Consensus        12 ~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~   44 (156)
T d2hr2a1          12 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPP   44 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhh
Confidence            456799999999999999999999998887654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.09  E-value=0.36  Score=31.44  Aligned_cols=37  Identities=16%  Similarity=0.030  Sum_probs=32.4

Q ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCCC
Q psy3703          16 NLDMMVANAERLYYGCAYKKCFTITEQVLSRDPYHTA   52 (79)
Q Consensus        16 N~Dvl~~~Ae~ly~~~~f~~c~~it~~iL~~Dpyn~~   52 (79)
                      +.++....|+.+...++++++.+..+++++.||.+..
T Consensus       275 ~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~  311 (334)
T d1dcea1         275 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA  311 (334)
T ss_dssp             HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHH
Confidence            4567778999999999999999999999999997544