Psyllid ID: psy3709

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MTAMRPLSSSITSTSAFTQQTTPQTQQISILPAVRQFQTSAVSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cEEEEEcEHHHccccccccccccccccccccHHHHccccHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mtamrplsssitstsaftqqttpqtqqisilpaVRQFQTSAVSRDIDSAAKFIGAGAatvgvagsgagigSVFGSLIIgyarnpslkqQLFSYAILGFALSEAMGLFSLMMAFLLLFAF
Flexible Loop (DISEMBL)
mtamrplsssitstsaftqqttpqtqqisiLPAVRQFQTSAVSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF
Low Complexity Region (SEG)
MTAMRPLsssitstsaftqqttpqtqqisiLPAVRQFQTSAVSRDIDSAAKFIgagaatvgvagsgagigsvfgsLIIGYARNPSLKQQLFSYAILGFALSEamglfslmmaflllfaf
Disordered region (IsUnstruct)
****************************SILPAVRQFQTSAVSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA*
Disordered Region (DISOPRED)
*TAMRPL**********************************VSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF
Disordered Region (DISEMBL)
************************TQQISILPAVRQFQTSAVSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF
Disordered Region (DISPRO)
MTAMRPLSSSITS**********************QFQTSAVSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTAMRPLSSSITSTSAFTQQTTPQTQQISILPAVRQFQTSAVSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	119	2.2.26 [Sep-21-2011]
Q9U505	131	ATP synthase lipid-bindin	N/A	N/A	0.915	0.832	0.758	8e-40
P07926	143	ATP synthase lipid-bindin	yes	N/A	0.932	0.776	0.736	3e-39
Q06056	143	ATP synthase lipid-bindin	N/A	N/A	0.932	0.776	0.736	4e-39
Q9CR84	136	ATP synthase lipid-bindin	yes	N/A	0.949	0.830	0.724	4e-39
P05496	136	ATP synthase lipid-bindin	yes	N/A	0.957	0.838	0.730	5e-39
Q06645	136	ATP synthase lipid-bindin	yes	N/A	0.957	0.838	0.721	6e-39
P32876	136	ATP synthase lipid-bindin	no	N/A	0.957	0.838	0.739	8e-39
A1XQS5	136	ATP synthase lipid-bindin	no	N/A	0.957	0.838	0.721	1e-38
Q06055	141	ATP synthase lipid-bindin	no	N/A	0.957	0.808	0.703	2e-38
P56383	146	ATP synthase lipid-bindin	no	N/A	0.747	0.609	0.877	3e-38

>sp|Q9U505|AT5G_MANSE ATP synthase lipid-binding protein, mitochondrial OS=Manduca sexta PE=2 SV=1

 Score =  162 bits (409), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 88/116 (75%), Positives = 97/116 (83%), Gaps = 7/116 (6%)

Query: 4   MRPLSSSITSTSAFTQQTTPQTQQISILPAVRQFQTSAVSRDIDSAAKFIGAGAATVGVA 63
           +RPL++  T T     Q  P     + L AVR FQT++V++DIDSAAKFIGAGAATVGVA
Sbjct: 23  VRPLAAVSTQT-----QLVPAAP--AQLSAVRSFQTTSVTKDIDSAAKFIGAGAATVGVA 75

Query: 64  GSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF 119
           GSGAGIG+VFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF LMMAFLLLFAF
Sbjct: 76  GSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMMAFLLLFAF 131

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain. A homomeric c-ring of probably 10 subunits is part of the complex rotary element.
Manduca sexta (taxid: 7130)

>sp|P07926|AT5G2_BOVIN ATP synthase lipid-binding protein, mitochondrial OS=Bos taurus GN=ATP5G2 PE=1 SV=1

 Score =  159 bits (403), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 84/114 (73%), Positives = 95/114 (83%), Gaps = 3/114 (2%)

Query: 5   RPLSSSITSTSAFTQQTTPQTQQISILPAVRQFQTSAVSRDIDSAAKFIGAGAATVGVAG 64
           RP   ++T  S  +    P+    S+ P+ R FQTSA+SRDID+AAKFIGAGAATVGVAG
Sbjct: 32  RP--ETLTDESHSSLAVVPRPLTTSLTPS-RSFQTSAISRDIDTAAKFIGAGAATVGVAG 88

Query: 65  SGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118
           SGAGIG+VFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF LM+AFL+LFA
Sbjct: 89  SGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 142

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain. A homomeric c-ring of probably 10 subunits is part of the complex rotary element.

Bos taurus (taxid: 9913)

>sp|Q06056|AT5G2_SHEEP ATP synthase lipid-binding protein, mitochondrial OS=Ovis aries GN=ATP5G2 PE=2 SV=1

 Score =  159 bits (403), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 84/114 (73%), Positives = 95/114 (83%), Gaps = 3/114 (2%)

Query: 5   RPLSSSITSTSAFTQQTTPQTQQISILPAVRQFQTSAVSRDIDSAAKFIGAGAATVGVAG 64
           RP   ++T  S  +    P+    S+ P+ R FQTSA+SRDID+AAKFIGAGAATVGVAG
Sbjct: 32  RP--ETLTDESHSSLAVVPRPLTTSLTPS-RSFQTSAISRDIDTAAKFIGAGAATVGVAG 88

Query: 65  SGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118
           SGAGIG+VFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF LM+AFL+LFA
Sbjct: 89  SGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 142

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain. A homomeric c-ring of probably 10 subunits is part of the complex rotary element.

Ovis aries (taxid: 9940)

>sp|Q9CR84|AT5G1_MOUSE ATP synthase lipid-binding protein, mitochondrial OS=Mus musculus GN=Atp5g1 PE=2 SV=1

 Score =  159 bits (403), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 84/116 (72%), Positives = 100/116 (86%), Gaps = 3/116 (2%)

Query: 4   MRPLSSSITST-SAFTQQTTPQTQQISILPAVRQFQTSAVSRDIDSAAKFIGAGAATVGV 62
           +RP+S+S+ S   A ++Q +  +  + +  A R+FQTS +SRDID+AAKFIGAGAATVGV
Sbjct: 22  IRPVSASLLSRPEAPSKQPSCSSSPLQV--ARREFQTSVISRDIDTAAKFIGAGAATVGV 79

Query: 63  AGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118
           AGSGAGIG+VFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF LM+AFL+LFA
Sbjct: 80  AGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 135

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain. A homomeric c-ring of probably 10 subunits is part of the complex rotary element.

Mus musculus (taxid: 10090)

>sp|P05496|AT5G1_HUMAN ATP synthase lipid-binding protein, mitochondrial OS=Homo sapiens GN=ATP5G1 PE=2 SV=2

 Score =  159 bits (402), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 84/115 (73%), Positives = 94/115 (81%), Gaps = 1/115 (0%)

Query: 4   MRPLSSSITSTSAFTQQTTPQTQQISILPAVRQFQTSAVSRDIDSAAKFIGAGAATVGVA 63
           +RP+S+S  + S       P      +  A R+FQTS VSRDID+AAKFIGAGAATVGVA
Sbjct: 22  IRPVSASFLN-SPVNSSKQPSYSNFPLQVARREFQTSVVSRDIDTAAKFIGAGAATVGVA 80

Query: 64  GSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118
           GSGAGIG+VFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF LM+AFL+LFA
Sbjct: 81  GSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 135

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain. A homomeric c-ring of probably 10 subunits is part of the complex rotary element.

Homo sapiens (taxid: 9606)

>sp|Q06645|AT5G1_RAT ATP synthase lipid-binding protein, mitochondrial OS=Rattus norvegicus GN=Atp5g1 PE=1 SV=1

 Score =  159 bits (401), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 83/115 (72%), Positives = 95/115 (82%), Gaps = 1/115 (0%)

Query: 4   MRPLSSSITSTSAFTQQTTPQTQQISILPAVRQFQTSAVSRDIDSAAKFIGAGAATVGVA 63
           +RP+S+S+ S      +  P      +  A R+FQTS +SRDID+AAKFIGAGAATVGVA
Sbjct: 22  IRPVSASLLSRPEAPSKK-PSCCSSPLQVARREFQTSVISRDIDTAAKFIGAGAATVGVA 80

Query: 64  GSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118
           GSGAGIG+VFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF LM+AFL+LFA
Sbjct: 81  GSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 135

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain. A homomeric c-ring of probably 10 subunits is part of the complex rotary element.

Rattus norvegicus (taxid: 10116)

>sp|P32876|AT5G1_BOVIN ATP synthase lipid-binding protein, mitochondrial OS=Bos taurus GN=ATP5G1 PE=1 SV=1

 Score =  158 bits (400), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 85/115 (73%), Positives = 94/115 (81%), Gaps = 1/115 (0%)

Query: 4   MRPLSSSITSTSAFTQQTTPQTQQISILPAVRQFQTSAVSRDIDSAAKFIGAGAATVGVA 63
           +RP+S+S  S     Q   P      +  A R+FQTS VSRDID+AAKFIGAGAATVGVA
Sbjct: 22  IRPVSASFLSRPEI-QSVQPSYSSGPLQVARREFQTSVVSRDIDTAAKFIGAGAATVGVA 80

Query: 64  GSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118
           GSGAGIG+VFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF LM+AFL+LFA
Sbjct: 81  GSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 135

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain. A homomeric c-ring of probably 10 subunits is part of the complex rotary element.

Bos taurus (taxid: 9913)

>sp|A1XQS5|AT5G1_PIG ATP synthase lipid-binding protein, mitochondrial OS=Sus scrofa GN=ATP5G1 PE=2 SV=1

 Score =  158 bits (399), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 83/115 (72%), Positives = 94/115 (81%), Gaps = 1/115 (0%)

Query: 4   MRPLSSSITSTSAFTQQTTPQTQQISILPAVRQFQTSAVSRDIDSAAKFIGAGAATVGVA 63
           +RP+S+S  S      +  P    + +  A R+FQTS VSRDID+AAKFIGAGAATVGVA
Sbjct: 22  IRPVSASFLSRPEIPSEQPP-CSSVPLQVARREFQTSVVSRDIDTAAKFIGAGAATVGVA 80

Query: 64  GSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118
           GSGAGIG+VFGSLIIGYARNPSLKQQLFSYAILGFAL EAMGLF LM+AFL+LFA
Sbjct: 81  GSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALFEAMGLFCLMVAFLILFA 135

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain. A homomeric c-ring of probably 10 subunits is part of the complex rotary element.

Sus scrofa (taxid: 9823)

>sp|Q06055|AT5G2_HUMAN ATP synthase lipid-binding protein, mitochondrial OS=Homo sapiens GN=ATP5G2 PE=2 SV=1

 Score =  157 bits (397), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 83/118 (70%), Positives = 94/118 (79%), Gaps = 4/118 (3%)

Query: 5   RPLSSSITSTSAFTQQTTPQTQQISI----LPAVRQFQTSAVSRDIDSAAKFIGAGAATV 60
           RPLS+ +          +  +  +S     L + R FQTSA+SRDID+AAKFIGAGAATV
Sbjct: 23  RPLSAVVLKRPEILTDESLSSLAVSCPLTSLVSSRSFQTSAISRDIDTAAKFIGAGAATV 82

Query: 61  GVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118
           GVAGSGAGIG+VFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF LM+AFL+LFA
Sbjct: 83  GVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFA 140

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain. A homomeric c-ring of probably 10 subunits is part of the complex rotary element.

Homo sapiens (taxid: 9606)

>sp|P56383|AT5G2_MOUSE ATP synthase lipid-binding protein, mitochondrial OS=Mus musculus GN=Atp5g2 PE=2 SV=2

 Score =  156 bits (395), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 79/90 (87%), Positives = 87/90 (96%), Gaps = 1/90 (1%)

Query: 29  SILPAVRQFQTSAVSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQ 88
           S++P+ R FQTSA+SRDID+AAKFIGAGAATVGVAGSGAGIG+VFGSLIIGYARNPSLKQ
Sbjct: 57  SLIPS-RSFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQ 115

Query: 89  QLFSYAILGFALSEAMGLFSLMMAFLLLFA 118
           QLFSYAILGFALSEAMGLF LM+AFL+LFA
Sbjct: 116 QLFSYAILGFALSEAMGLFCLMVAFLILFA 145

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain. A homomeric c-ring of probably 10 subunits is part of the complex rotary element.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
332030330	138	ATP synthase lipid-binding protein, mito	0.983	0.847	0.822	2e-45
307181254	134	ATP synthase lipid-binding protein, mito	0.983	0.873	0.822	7e-45
307200014	138	ATP synthase lipid-binding protein, mito	0.983	0.847	0.822	1e-44
242016971	146	ATP synthase lipid-binding protein, puta	0.974	0.794	0.747	2e-43
91091934	140	PREDICTED: similar to GA14517-PA [Tribol	0.974	0.828	0.777	3e-43
38048075	129	similar to Drosophila melanogaster CG174	0.941	0.868	0.796	1e-42
195505392	138	GE23327 [Drosophila yakuba] gi|194185585	0.941	0.811	0.796	1e-42
24651599	138	CG1746, isoform A [Drosophila melanogast	0.941	0.811	0.796	2e-42
56417588	138	mitochondrial ATP synthase lipid binding	0.941	0.811	0.796	2e-42
289743209	138	mitochondrial ATP synthase lipid binding	0.941	0.811	0.788	2e-42

>gi|332030330|gb|EGI70073.1| ATP synthase lipid-binding protein, mitochondrial [Acromyrmex echinatior]

 Score =  186 bits (471), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 97/118 (82%), Positives = 104/118 (88%), Gaps = 1/118 (0%)

Query: 2   TAMRPLSSSITSTSAFTQQTTPQTQQISILPAVRQFQTSAVSRDIDSAAKFIGAGAATVG 61
           T +RPLSS++ + S + QQ   QT  +S+LP VR FQTS VSRDIDSAAKFIGAGAATVG
Sbjct: 22  TYLRPLSSAVINHSQYLQQNQIQTP-VSLLPIVRSFQTSTVSRDIDSAAKFIGAGAATVG 80

Query: 62  VAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF 119
           VAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF LMMAFLLLFAF
Sbjct: 81  VAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMMAFLLLFAF 138

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307181254|gb|EFN68944.1| ATP synthase lipid-binding protein, mitochondrial [Camponotus floridanus]

 Score =  184 bits (466), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 97/118 (82%), Positives = 103/118 (87%), Gaps = 1/118 (0%)

Query: 2   TAMRPLSSSITSTSAFTQQTTPQTQQISILPAVRQFQTSAVSRDIDSAAKFIGAGAATVG 61
           T +RPLSS++ S S + QQ   QT  +S+ P VR FQTS VSRDIDSAAKFIGAGAATVG
Sbjct: 18  TYLRPLSSAVISHSQYLQQNQVQTP-VSLSPIVRSFQTSTVSRDIDSAAKFIGAGAATVG 76

Query: 62  VAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF 119
           VAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF LMMAFLLLFAF
Sbjct: 77  VAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMMAFLLLFAF 134

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307200014|gb|EFN80360.1| ATP synthase lipid-binding protein, mitochondrial [Harpegnathos saltator]

 Score =  183 bits (464), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 97/118 (82%), Positives = 103/118 (87%), Gaps = 1/118 (0%)

Query: 2   TAMRPLSSSITSTSAFTQQTTPQTQQISILPAVRQFQTSAVSRDIDSAAKFIGAGAATVG 61
           T +RPLSS++ S S   Q+   QT  +S+LP VR FQTS VSRDIDSAAKFIGAGAATVG
Sbjct: 22  TYLRPLSSAVISHSQSLQRDQIQTP-VSLLPVVRNFQTSTVSRDIDSAAKFIGAGAATVG 80

Query: 62  VAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF 119
           VAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF LMMAFLLLFAF
Sbjct: 81  VAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMMAFLLLFAF 138

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242016971|ref|XP_002428968.1| ATP synthase lipid-binding protein, putative [Pediculus humanus corporis] gi|212513797|gb|EEB16230.1| ATP synthase lipid-binding protein, putative [Pediculus humanus corporis]

 Score =  179 bits (453), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 92/123 (74%), Positives = 106/123 (86%), Gaps = 7/123 (5%)

Query: 4   MRPLSSSI-TSTSAFTQQTT------PQTQQISILPAVRQFQTSAVSRDIDSAAKFIGAG 56
           +RPLSS++  S++ ++ QTT      PQT   ++LP  R+FQTS ++RDIDSAAK+IGAG
Sbjct: 24  LRPLSSAVLKSSNIYSSQTTSNLITAPQTTNFNMLPINRRFQTSTITRDIDSAAKYIGAG 83

Query: 57  AATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLL 116
           AATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF LMM+FLLL
Sbjct: 84  AATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMMSFLLL 143

Query: 117 FAF 119
           FAF
Sbjct: 144 FAF 146

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91091934|ref|XP_967645.1| PREDICTED: similar to GA14517-PA [Tribolium castaneum] gi|270001304|gb|EEZ97751.1| hypothetical protein TcasGA2_TC011455 [Tribolium castaneum]

 Score =  178 bits (452), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 91/117 (77%), Positives = 102/117 (87%), Gaps = 1/117 (0%)

Query: 4   MRPLSSSITSTSAFTQQ-TTPQTQQISILPAVRQFQTSAVSRDIDSAAKFIGAGAATVGV 62
           +RPLS++++   +  Q     Q +Q ++LPAVR FQT+ VSRDIDSAAKFIGAGAATVGV
Sbjct: 24  LRPLSTALSQNPSLVQSPVVQQHKQATLLPAVRSFQTTPVSRDIDSAAKFIGAGAATVGV 83

Query: 63  AGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF 119
           AGSGAGIG+VFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF LMMAFLLLFAF
Sbjct: 84  AGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMMAFLLLFAF 140

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|38048075|gb|AAR09940.1| similar to Drosophila melanogaster CG1746, partial [Drosophila yakuba]

 Score =  176 bits (447), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 94/118 (79%), Positives = 102/118 (86%), Gaps = 6/118 (5%)

Query: 4   MRPLSSSITSTSAF--TQQTTPQTQQISILPAVRQFQTSAVSRDIDSAAKFIGAGAATVG 61
           +RPLSS+I S S     Q TTP    +++LP +R FQTS V+RDIDSAAKFIGAGAATVG
Sbjct: 16  LRPLSSAIISQSQTLAAQNTTP----VALLPQIRSFQTSPVTRDIDSAAKFIGAGAATVG 71

Query: 62  VAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF 119
           VAGSGAGIG+VFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF LMMAFLLLFAF
Sbjct: 72  VAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMMAFLLLFAF 129

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195505392|ref|XP_002099484.1| GE23327 [Drosophila yakuba] gi|194185585|gb|EDW99196.1| GE23327 [Drosophila yakuba]

 Score =  176 bits (446), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 94/118 (79%), Positives = 102/118 (86%), Gaps = 6/118 (5%)

Query: 4   MRPLSSSITSTSAF--TQQTTPQTQQISILPAVRQFQTSAVSRDIDSAAKFIGAGAATVG 61
           +RPLSS+I S S     Q TTP    +++LP +R FQTS V+RDIDSAAKFIGAGAATVG
Sbjct: 25  LRPLSSAIISQSQTLAAQNTTP----VALLPQIRSFQTSPVTRDIDSAAKFIGAGAATVG 80

Query: 62  VAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF 119
           VAGSGAGIG+VFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF LMMAFLLLFAF
Sbjct: 81  VAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMMAFLLLFAF 138

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24651599|ref|NP_651852.1| CG1746, isoform A [Drosophila melanogaster] gi|24651601|ref|NP_733422.1| CG1746, isoform B [Drosophila melanogaster] gi|24651603|ref|NP_733423.1| CG1746, isoform C [Drosophila melanogaster] gi|386766809|ref|NP_001247382.1| CG1746, isoform E [Drosophila melanogaster] gi|386766813|ref|NP_001247384.1| CG1746, isoform G [Drosophila melanogaster] gi|194905019|ref|XP_001981105.1| GG11879 [Drosophila erecta] gi|7302028|gb|AAF57131.1| CG1746, isoform B [Drosophila melanogaster] gi|23172756|gb|AAN14267.1| CG1746, isoform A [Drosophila melanogaster] gi|23172757|gb|AAN14268.1| CG1746, isoform C [Drosophila melanogaster] gi|41058227|gb|AAR99150.1| GM13193p [Drosophila melanogaster] gi|190655743|gb|EDV52975.1| GG11879 [Drosophila erecta] gi|383293039|gb|AFH06699.1| CG1746, isoform E [Drosophila melanogaster] gi|383293041|gb|AFH06701.1| CG1746, isoform G [Drosophila melanogaster]

 Score =  176 bits (446), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 94/118 (79%), Positives = 102/118 (86%), Gaps = 6/118 (5%)

Query: 4   MRPLSSSITSTSAF--TQQTTPQTQQISILPAVRQFQTSAVSRDIDSAAKFIGAGAATVG 61
           +RPLSS+I S S     Q TTP    +++LP +R FQTS V+RDIDSAAKFIGAGAATVG
Sbjct: 25  LRPLSSAIISQSQTLAAQNTTP----VALLPQIRSFQTSPVTRDIDSAAKFIGAGAATVG 80

Query: 62  VAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF 119
           VAGSGAGIG+VFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF LMMAFLLLFAF
Sbjct: 81  VAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMMAFLLLFAF 138

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|56417588|gb|AAV90735.1| mitochondrial ATP synthase lipid binding protein precursor [Aedes albopictus]

 Score =  176 bits (446), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 94/118 (79%), Positives = 102/118 (86%), Gaps = 6/118 (5%)

Query: 4   MRPLSSSITSTSAF--TQQTTPQTQQISILPAVRQFQTSAVSRDIDSAAKFIGAGAATVG 61
           +RPLSS++ S S     Q +TP    +++LP VR FQTS VSRDIDSAAKFIGAGAATVG
Sbjct: 25  LRPLSSAVISQSQTLAAQNSTP----VALLPQVRSFQTSQVSRDIDSAAKFIGAGAATVG 80

Query: 62  VAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF 119
           VAGSGAGIG+VFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF LMMAFLLLFAF
Sbjct: 81  VAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMMAFLLLFAF 138

Source: Aedes albopictus

Species: Aedes albopictus

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289743209|gb|ADD20352.1| mitochondrial ATP synthase lipid binding protein precursor [Glossina morsitans morsitans] gi|289743213|gb|ADD20354.1| mitochondrial F1F0-ATP synthase subunit C/ATP9/proteolipid [Glossina morsitans morsitans]

 Score =  176 bits (446), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 93/118 (78%), Positives = 102/118 (86%), Gaps = 6/118 (5%)

Query: 4   MRPLSSSITSTSAF--TQQTTPQTQQISILPAVRQFQTSAVSRDIDSAAKFIGAGAATVG 61
           +RPLSS++ S S     Q TTP    +++LP +R FQTS V+RDIDSAAKFIGAGAATVG
Sbjct: 25  LRPLSSAVISQSQTLAAQNTTP----VALLPQIRSFQTSQVTRDIDSAAKFIGAGAATVG 80

Query: 62  VAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF 119
           VAGSGAGIG+VFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF LMMAFLLLFAF
Sbjct: 81  VAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMMAFLLLFAF 138

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	119
FB|FBgn0039830	138	CG1746 [Drosophila melanogaste	0.605	0.521	0.625	5.3e-17
UNIPROTKB|E1BV48	141	ATP5G3 "Uncharacterized protei	0.588	0.496	0.642	6.7e-17
UNIPROTKB|F1RZI0	141	ATP5G3 "Uncharacterized protei	0.596	0.503	0.633	8.6e-17
ZFIN|ZDB-GENE-020814-1	140	atp5g3b "ATP synthase, H+ tran	0.588	0.5	0.642	1.1e-16
ZFIN|ZDB-GENE-040426-857	139	atp5g3a "ATP synthase, H+ tran	0.588	0.503	0.642	1.1e-16
UNIPROTKB|E1BQ71	136	LOC100858454 "Uncharacterized	0.571	0.5	0.647	2.3e-16
UNIPROTKB|E2RCA7	141	ATP5G3 "Uncharacterized protei	0.571	0.482	0.632	2.9e-16
UNIPROTKB|P48201	142	ATP5G3 "ATP synthase lipid-bin	0.571	0.478	0.632	2.9e-16
RGD|620052	142	Atp5g3 "ATP synthase, H+ trans	0.571	0.478	0.632	2.9e-16
UNIPROTKB|Q71S46	142	Atp5g3 "ATP synthase lipid-bin	0.571	0.478	0.632	2.9e-16

FB|FBgn0039830 CG1746 [Drosophila melanogaster (taxid:7227)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 45/72 (62%), Positives = 47/72 (65%)

Query:    31 LPAVRQFQTSAVSRDIDSAAKFIXXXXXXXXXXXXXXXXXXXXXXLIIGYARNPSLKQQL 90
             LP +R FQTS V+RDIDSAAKFI                      LIIGYARNPSLKQQL
Sbjct:    50 LPQIRSFQTSPVTRDIDSAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQL 109

Query:    91 FSYAILGFALSE 102
             FSYAILGFALSE
Sbjct:   110 FSYAILGFALSE 121

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=ISS;NAS

GO:0015992 "proton transport" evidence=ISS

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=ISS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

UNIPROTKB|E1BV48 ATP5G3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 45/70 (64%), Positives = 48/70 (68%)

Query:    33 AVRQFQTSAVSRDIDSAAKFIXXXXXXXXXXXXXXXXXXXXXXLIIGYARNPSLKQQLFS 92
             A+R+FQTSAVSRDID+AAKFI                      LIIGYARNPSLKQQLFS
Sbjct:    55 ALREFQTSAVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFS 114

Query:    93 YAILGFALSE 102
             YAILGFALSE
Sbjct:   115 YAILGFALSE 124

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0045263 "proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

UNIPROTKB|F1RZI0 ATP5G3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 45/71 (63%), Positives = 47/71 (66%)

Query:    32 PAVRQFQTSAVSRDIDSAAKFIXXXXXXXXXXXXXXXXXXXXXXLIIGYARNPSLKQQLF 91
             P  R+FQTSAVSRDID+AAKFI                      LIIGYARNPSLKQQLF
Sbjct:    54 PIQREFQTSAVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLF 113

Query:    92 SYAILGFALSE 102
             SYAILGFALSE
Sbjct:   114 SYAILGFALSE 124

GO:0005739 "mitochondrion" evidence=IEA

GO:0045263 "proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

ZFIN|ZDB-GENE-020814-1 atp5g3b "ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) genome duplicate b" [Danio rerio (taxid:7955)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 45/70 (64%), Positives = 47/70 (67%)

Query:    33 AVRQFQTSAVSRDIDSAAKFIXXXXXXXXXXXXXXXXXXXXXXLIIGYARNPSLKQQLFS 92
             AVR FQTSA+SRDID+AAKFI                      LIIGYARNPSLKQQLFS
Sbjct:    54 AVRGFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFS 113

Query:    93 YAILGFALSE 102
             YAILGFALSE
Sbjct:   114 YAILGFALSE 123

GO:0045263 "proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033177 "proton-transporting two-sector ATPase complex, proton-transporting domain" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-040426-857 atp5g3a "ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9), genome duplicate a" [Danio rerio (taxid:7955)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 45/70 (64%), Positives = 47/70 (67%)

Query:    33 AVRQFQTSAVSRDIDSAAKFIXXXXXXXXXXXXXXXXXXXXXXLIIGYARNPSLKQQLFS 92
             A+R FQTSAVSRDID+AAKFI                      LIIGYARNPSLKQQLFS
Sbjct:    53 ALRSFQTSAVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFS 112

Query:    93 YAILGFALSE 102
             YAILGFALSE
Sbjct:   113 YAILGFALSE 122

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033177 "proton-transporting two-sector ATPase complex, proton-transporting domain" evidence=IEA

GO:0045263 "proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

UNIPROTKB|E1BQ71 LOC100858454 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 44/68 (64%), Positives = 46/68 (67%)

Query:    35 RQFQTSAVSRDIDSAAKFIXXXXXXXXXXXXXXXXXXXXXXLIIGYARNPSLKQQLFSYA 94
             R+FQTSAVSRDID+AAKFI                      LIIGYARNPSLKQQLFSYA
Sbjct:    52 REFQTSAVSRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYA 111

Query:    95 ILGFALSE 102
             ILGFALSE
Sbjct:   112 ILGFALSE 119

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0045263 "proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|E2RCA7 ATP5G3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 43/68 (63%), Positives = 46/68 (67%)

Query:    35 RQFQTSAVSRDIDSAAKFIXXXXXXXXXXXXXXXXXXXXXXLIIGYARNPSLKQQLFSYA 94
             R+FQTSA+SRDID+AAKFI                      LIIGYARNPSLKQQLFSYA
Sbjct:    57 REFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYA 116

Query:    95 ILGFALSE 102
             ILGFALSE
Sbjct:   117 ILGFALSE 124

GO:0045263 "proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|P48201 ATP5G3 "ATP synthase lipid-binding protein, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 43/68 (63%), Positives = 46/68 (67%)

Query:    35 RQFQTSAVSRDIDSAAKFIXXXXXXXXXXXXXXXXXXXXXXLIIGYARNPSLKQQLFSYA 94
             R+FQTSA+SRDID+AAKFI                      LIIGYARNPSLKQQLFSYA
Sbjct:    58 REFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYA 117

Query:    95 ILGFALSE 102
             ILGFALSE
Sbjct:   118 ILGFALSE 125

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0045263 "proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0005215 "transporter activity" evidence=NAS

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=TAS

RGD|620052 Atp5g3 "ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)" [Rattus norvegicus (taxid:10116)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 43/68 (63%), Positives = 46/68 (67%)

Query:    35 RQFQTSAVSRDIDSAAKFIXXXXXXXXXXXXXXXXXXXXXXLIIGYARNPSLKQQLFSYA 94
             R+FQTSA+SRDID+AAKFI                      LIIGYARNPSLKQQLFSYA
Sbjct:    58 REFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYA 117

Query:    95 ILGFALSE 102
             ILGFALSE
Sbjct:   118 ILGFALSE 125

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0007568 "aging" evidence=IEP

GO:0008289 "lipid binding" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0045263 "proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0045471 "response to ethanol" evidence=IEP

UNIPROTKB|Q71S46 Atp5g3 "ATP synthase lipid-binding protein, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 43/68 (63%), Positives = 46/68 (67%)

Query:    35 RQFQTSAVSRDIDSAAKFIXXXXXXXXXXXXXXXXXXXXXXLIIGYARNPSLKQQLFSYA 94
             R+FQTSA+SRDID+AAKFI                      LIIGYARNPSLKQQLFSYA
Sbjct:    58 REFQTSAISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYA 117

Query:    95 ILGFALSE 102
             ILGFALSE
Sbjct:   118 ILGFALSE 125

GO:0008289 "lipid binding" evidence=IEA

GO:0015078 "hydrogen ion transmembrane transporter activity" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0045263 "proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P07926	AT5G2_BOVIN	No assigned EC number	0.7368	0.9327	0.7762	yes	N/A
Q9CR84	AT5G1_MOUSE	No assigned EC number	0.7241	0.9495	0.8308	yes	N/A
Q06645	AT5G1_RAT	No assigned EC number	0.7217	0.9579	0.8382	yes	N/A
Q06646	AT5G2_RAT	No assigned EC number	0.8777	0.7478	0.6312	no	N/A
Q9U505	AT5G_MANSE	No assigned EC number	0.7586	0.9159	0.8320	N/A	N/A
Q9BKS0	AT5G_CAEEL	No assigned EC number	0.6403	0.9075	0.9310	yes	N/A
P0C519	ATP9_ORYSJ	No assigned EC number	0.7307	0.4369	0.7027	yes	N/A
P56384	AT5G3_MOUSE	No assigned EC number	0.7083	0.9747	0.8226	no	N/A
Q75G38	ATP9_ASHGO	No assigned EC number	0.6231	0.5798	0.9078	yes	N/A
Q06056	AT5G2_SHEEP	No assigned EC number	0.7368	0.9327	0.7762	N/A	N/A
P60112	ATP9_ARATH	No assigned EC number	0.6533	0.6302	0.8823	yes	N/A
Q0BQY6	ATPL_GRABC	No assigned EC number	0.5774	0.5966	0.9594	yes	N/A
P69421	ATP9_SOYBN	No assigned EC number	0.7307	0.4369	0.7027	yes	N/A
Q37695	ATP9_YARLI	No assigned EC number	0.6571	0.5882	0.9210	yes	N/A
P32876	AT5G1_BOVIN	No assigned EC number	0.7391	0.9579	0.8382	no	N/A
A9RAH4	ATP9_DEBHA	No assigned EC number	0.6285	0.5882	0.9210	yes	N/A
P92811	ATP9_KLULA	No assigned EC number	0.6571	0.5882	0.9210	yes	N/A
Q85Q98	ATP9_CANGA	No assigned EC number	0.6714	0.5882	0.9210	yes	N/A
Q06055	AT5G2_HUMAN	No assigned EC number	0.7033	0.9579	0.8085	no	N/A
Q5RAP9	AT5G2_PONAB	No assigned EC number	0.9166	0.7058	0.5957	no	N/A
A1XQS5	AT5G1_PIG	No assigned EC number	0.7217	0.9579	0.8382	no	N/A
P05496	AT5G1_HUMAN	No assigned EC number	0.7304	0.9579	0.8382	yes	N/A
P17605	AT5G1_SHEEP	No assigned EC number	0.7304	0.9579	0.8382	N/A	N/A
A8XDX2	AT5G_CAEBR	No assigned EC number	0.6403	0.9075	0.9310	N/A	N/A
P56383	AT5G2_MOUSE	No assigned EC number	0.8777	0.7478	0.6095	no	N/A
P21537	ATP9_SCHPO	No assigned EC number	0.6428	0.5882	0.9459	yes	N/A
P61829	ATP9_YEAST	No assigned EC number	0.6376	0.5798	0.9078	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.6.3.14	LOW CONFIDENCE prediction!
3rd Layer	3.6.3	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	119
MTH00222	77	MTH00222, ATP9, ATP synthase F0 subunit 9; Provisi	8e-36
PRK07558	74	PRK07558, PRK07558, F0F1 ATP synthase subunit C; V	1e-19
PRK07159	100	PRK07159, PRK07159, F0F1 ATP synthase subunit C; V	7e-11
pfam00137	66	pfam00137, ATP-synt_C, ATP synthase subunit C	1e-09
COG0636	79	COG0636, AtpE, F0F1-type ATP synthase, subunit c/A	1e-08
PRK13469	79	PRK13469, PRK13469, F0F1 ATP synthase subunit C; P	1e-08
PRK13471	85	PRK13471, PRK13471, F0F1 ATP synthase subunit C; P	6e-06
PRK07874	80	PRK07874, PRK07874, F0F1 ATP synthase subunit C; V	1e-05
CHL00061	81	CHL00061, atpH, ATP synthase CF0 C subunit	0.001
TIGR01260	58	TIGR01260, ATP_synt_c, ATP synthase, F0 subunit c	0.002

>gnl|CDD|164765 MTH00222, ATP9, ATP synthase F0 subunit 9; Provisional

 Score =  117 bits (294), Expect = 8e-36
 Identities = 62/75 (82%), Positives = 71/75 (94%)

Query: 45  DIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAM 104
           +I +AAKF+GAGAAT+G AGSGAGIG+VFG+LIIGYARNPSLKQQLF+YAILGFA+SEAM
Sbjct: 3   EILTAAKFVGAGAATIGAAGSGAGIGTVFGNLIIGYARNPSLKQQLFTYAILGFAISEAM 62

Query: 105 GLFSLMMAFLLLFAF 119
           GLF LMMAFL+LFA 
Sbjct: 63  GLFCLMMAFLILFAL 77

Length = 77

>gnl|CDD|181027 PRK07558, PRK07558, F0F1 ATP synthase subunit C; Validated

 Score = 75.8 bits (187), Expect = 1e-19
 Identities = 36/70 (51%), Positives = 51/70 (72%)

Query: 49  AAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFS 108
           A KFIGAG A +G+AG+  G+G++FG+ + G  RNPS     F Y ++G AL+EA+G+FS
Sbjct: 5   ALKFIGAGLACIGMAGAALGVGNIFGNYLSGALRNPSAADSQFGYLLIGAALAEALGIFS 64

Query: 109 LMMAFLLLFA 118
            ++A LLLFA
Sbjct: 65  FLIALLLLFA 74

Length = 74

>gnl|CDD|235949 PRK07159, PRK07159, F0F1 ATP synthase subunit C; Validated

 Score = 54.1 bits (130), Expect = 7e-11
 Identities = 34/107 (31%), Positives = 52/107 (48%), Gaps = 9/107 (8%)

Query: 11  ITSTSAFTQQTTPQTQQISILPAVRQFQTSAVSRDIDSAAKFIGAGAATVGVAGSGAGIG 70
           + S   F  Q    TQ +              +      A +IGAG A +GV G G G G
Sbjct: 1   VNSIVNFVGQILQNTQTV---------SQKVAADSSGLKAAYIGAGLAMIGVIGVGLGQG 51

Query: 71  SVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF 117
             FG  +   ARNP  ++Q+F    +G A+SE   +++L++AF+L+F
Sbjct: 52  YAFGKAVEAIARNPEAQKQVFKLLFIGSAISETSSIYALLVAFILIF 98

Length = 100

>gnl|CDD|215743 pfam00137, ATP-synt_C, ATP synthase subunit C

 Score = 50.1 bits (121), Expect = 1e-09
 Identities = 28/70 (40%), Positives = 40/70 (57%), Gaps = 5/70 (7%)

Query: 50  AKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFS 108
              +GAG A  +   G+G GIG    + I   ARNP L    F   ++G AL+EA+ ++ 
Sbjct: 1   LAALGAGLAIGLAALGAGIGIGIAGAAAIEAIARNPEL----FGKMLIGAALAEALAIYG 56

Query: 109 LMMAFLLLFA 118
           L++A LLLFA
Sbjct: 57  LVIALLLLFA 66

Length = 66

>gnl|CDD|223709 COG0636, AtpE, F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]

 Score = 48.0 bits (115), Expect = 1e-08
 Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 48  SAAKFIGAG-AATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGL 106
                IGAG A  +   G+G G G +  + +   AR P    +LF    +G AL EA+G+
Sbjct: 6   KGLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEALGI 65

Query: 107 FSLMMAFLLLFAF 119
           + L++A LLLFA 
Sbjct: 66  YGLVIALLLLFAN 78

Length = 79

>gnl|CDD|184068 PRK13469, PRK13469, F0F1 ATP synthase subunit C; Provisional

 Score = 47.7 bits (114), Expect = 1e-08
 Identities = 25/76 (32%), Positives = 38/76 (50%)

Query: 43  SRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSE 102
            +        IGAG A +   G+G GIG   G  +    R P    ++ S  +LG AL+E
Sbjct: 3   GKAFVMGMSAIGAGIAALAGIGAGIGIGIATGKAVEAVGRQPEASGKIMSTMLLGAALAE 62

Query: 103 AMGLFSLMMAFLLLFA 118
           A  ++ L++A +LLF 
Sbjct: 63  ATAIYGLVIAIILLFV 78

Length = 79

>gnl|CDD|184069 PRK13471, PRK13471, F0F1 ATP synthase subunit C; Provisional

 Score = 41.0 bits (96), Expect = 6e-06
 Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 1/71 (1%)

Query: 49  AAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF 107
             K+IGAG    +G  G G G G++    +   AR P +   + +  +L  A++E  G++
Sbjct: 14  LGKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGTITTRMLLADAVAETTGIY 73

Query: 108 SLMMAFLLLFA 118
           SL++AFL+L  
Sbjct: 74  SLLIAFLILLV 84

Length = 85

>gnl|CDD|169138 PRK07874, PRK07874, F0F1 ATP synthase subunit C; Validated

 Score = 40.2 bits (94), Expect = 1e-05
 Identities = 27/71 (38%), Positives = 35/71 (49%), Gaps = 2/71 (2%)

Query: 47  DSAAKFIGAGAATVGVA--GSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAM 104
            +   F G GA   G+A  G G G+G V G  + G AR P +  QL +   LG A  EA+
Sbjct: 10  ATETTFTGLGAVGYGLAAIGPGIGVGIVVGKALEGMARQPEMAGQLRTTMFLGIAFVEAL 69

Query: 105 GLFSLMMAFLL 115
            L  L+  FL 
Sbjct: 70  ALIGLVAGFLF 80

Length = 80

>gnl|CDD|177001 CHL00061, atpH, ATP synthase CF0 C subunit

 Score = 35.1 bits (81), Expect = 0.001
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 3/75 (4%)

Query: 46  IDSAAKFIGAGAATVGVAGSGAGIG--SVFGSLIIGYARNPSLKQQLFSYAILGFALSEA 103
           + SAA  I AG A VG+A  G G+G  +  G  + G AR P  + ++    +L  A  EA
Sbjct: 4   LISAASVIAAGLA-VGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEA 62

Query: 104 MGLFSLMMAFLLLFA 118
           + ++ L++A  LLFA
Sbjct: 63  LTIYGLVVALALLFA 77

Length = 81

>gnl|CDD|130327 TIGR01260, ATP_synt_c, ATP synthase, F0 subunit c

 Score = 33.9 bits (78), Expect = 0.002
 Identities = 19/55 (34%), Positives = 32/55 (58%)

Query: 64  GSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA 118
           G+  GIG + G  +   AR P LK  L +   +G  L +A+ + ++++A +LLFA
Sbjct: 4   GAAIGIGILGGKFLESAARQPELKPLLRTTMFIGMGLVDAIPMIAVVIALILLFA 58

This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis [Energy metabolism, ATP-proton motive force interconversion]. Length = 58

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	119
KOG3025|consensus	137		99.95
MTH00222	77	ATP9 ATP synthase F0 subunit 9; Provisional	99.92
PRK07558	74	F0F1 ATP synthase subunit C; Validated	99.9
PRK06876	78	F0F1 ATP synthase subunit C; Validated	99.9
PRK13471	85	F0F1 ATP synthase subunit C; Provisional	99.88
PRK13469	79	F0F1 ATP synthase subunit C; Provisional	99.88
PRK08482	105	F0F1 ATP synthase subunit C; Validated	99.88
CHL00061	81	atpH ATP synthase CF0 C subunit	99.88
TIGR03322	86	alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C.	99.87
PRK13468	82	F0F1 ATP synthase subunit C; Provisional	99.87
PRK13464	101	F0F1 ATP synthase subunit C; Provisional	99.86
PRK07159	100	F0F1 ATP synthase subunit C; Validated	99.86
PRK05880	81	F0F1 ATP synthase subunit C; Validated	99.86
PRK07354	81	F0F1 ATP synthase subunit C; Validated	99.86
TIGR01260	58	ATP_synt_c ATP synthase, F0 subunit c. This model	99.84
PRK07874	80	F0F1 ATP synthase subunit C; Validated	99.84
PRK13467	66	F0F1 ATP synthase subunit C; Provisional	99.84
COG0636	79	AtpE F0F1-type ATP synthase, subunit c/Archaeal/va	99.82
PRK13466	66	F0F1 ATP synthase subunit C; Provisional	99.82
PF00137	66	ATP-synt_C: ATP synthase subunit C; InterPro: IPR0	99.69
PRK06251	102	V-type ATP synthase subunit K; Validated	99.67
PRK08344	157	V-type ATP synthase subunit K; Validated	99.56
PRK14893	161	V-type ATP synthase subunit K; Provisional	99.53
PRK14893	161	V-type ATP synthase subunit K; Provisional	99.52
PRK06271	213	V-type ATP synthase subunit K; Validated	99.5
PRK06558	159	V-type ATP synthase subunit K; Validated	99.49
PRK06271	213	V-type ATP synthase subunit K; Validated	99.42
PRK09621	141	V-type ATP synthase subunit K; Provisional	99.41
PRK06558	159	V-type ATP synthase subunit K; Validated	99.27
PRK08344	157	V-type ATP synthase subunit K; Validated	99.18
PRK06649	143	V-type ATP synthase subunit K; Validated	99.01
PRK09621	141	V-type ATP synthase subunit K; Provisional	98.63
KOG0232|consensus	156		98.39
TIGR01100	108	V_ATP_synt_C vacuolar ATP synthase 16 kDa proteoli	98.3
PRK06649	143	V-type ATP synthase subunit K; Validated	97.75
KOG0233|consensus	196		96.68
KOG0233|consensus	196		96.14

>KOG3025|consensus

Probab=99.95  E-value=6.2e-29  Score=183.14  Aligned_cols=116  Identities=72%  Similarity=1.037  Sum_probs=107.7

Q ss_pred             cccchhHHhhcCcccccCCC-CcccccchhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhhhhHHHhHhhHHHHHHHHh
Q psy3709           3 AMRPLSSSITSTSAFTQQTT-PQTQQISILPAVRQFQTSAVSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYA   81 (119)
Q Consensus         3 ~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~q~~~~~~~i~~~~~~igAGla~lg~~GagiGiG~v~~~aieaiA   81 (119)
                      ..||+| ...++||...+.. +++.+...++..|+|||++.++||++++|+||+|.+.+|..|+|+|+|.++++.+.+++
T Consensus        21 ~~~~ls-~~~~~~e~~~~~~~~~~s~~~~~~~~RsFQTS~is~~i~~aak~igag~atvgv~gsg~gig~vf~~li~g~a   99 (137)
T KOG3025|consen   21 AWRPLS-YSSSRPENVRTLQASSLSNIAQLVEPRSFQTSVISRDIDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYA   99 (137)
T ss_pred             hhhhhh-hhhcccchhhhhhhcccccccccccccceehhhhHHHHHHHHHHhccchhhhccccccchHHHHHHHHHhhcc
Confidence            568999 6899999776655 44667777788999999999999999999999999999999999999999999999999


Q ss_pred             cCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy3709          82 RNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF  119 (119)
Q Consensus        82 RqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa~  119 (119)
                      |||+.++++|.+.++|+|+.|++++||++++|+++|++
T Consensus       100 rnpslk~~lfs~ailgfalsea~glfclm~aflilfa~  137 (137)
T KOG3025|consen  100 RNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILFAM  137 (137)
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999975

>MTH00222 ATP9 ATP synthase F0 subunit 9; Provisional

Probab=99.92  E-value=1.5e-24  Score=148.58  Aligned_cols=75  Identities=83%  Similarity=1.311  Sum_probs=72.7

Q ss_pred             hHHHHHHHHHHHHHHHhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy3709          45 DIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF  119 (119)
Q Consensus        45 ~i~~~~~~igAGla~lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa~  119 (119)
                      |+.++++++|+|+++++.+|+|+|+|+++++++|+++||||++++++++||+|++++|+++||+++++++++|++
T Consensus         3 ~~~~~~~~igaGla~iaa~GagiG~G~~~~~~~e~vaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvia~lllfa~   77 (77)
T MTH00222          3 EILTAAKFVGAGAATIGAAGSGAGIGTVFGNLIIGYARNPSLKQQLFTYAILGFAISEAMGLFCLMMAFLILFAL   77 (77)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHcChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            678889999999999999999999999999999999999999999999999999999999999999999999974

>PRK07558 F0F1 ATP synthase subunit C; Validated

Probab=99.90  E-value=1.4e-23  Score=142.67  Aligned_cols=72  Identities=50%  Similarity=0.922  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHHHHhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709          47 DSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  118 (119)
Q Consensus        47 ~~~~~~igAGla~lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa  118 (119)
                      .++.+++|+|+++++.+|+|+|+|+++++++|+++||||++++++++|++|++++|+++||+++++++++|+
T Consensus         3 ~~~~~~igagla~laa~GagiG~G~~~~~a~e~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~alvva~lllfa   74 (74)
T PRK07558          3 AEALKFIGAGLACIGMAGAALGVGNIFGNYLSGALRNPSAADSQFGYLLIGAALAEALGIFSFLIALLLLFA   74 (74)
T ss_pred             HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            457799999999999999999999999999999999999999999999999999999999999999999995

>PRK06876 F0F1 ATP synthase subunit C; Validated

Probab=99.90  E-value=1.6e-23  Score=143.71  Aligned_cols=74  Identities=30%  Similarity=0.461  Sum_probs=71.6

Q ss_pred             hHHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709          45 DIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  118 (119)
Q Consensus        45 ~i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa  118 (119)
                      |+..+.+++|+|+++ ++++|+|+|+|.++++++|+++||||++++++++|+++++++|+++||+++++++++|+
T Consensus         2 ~~~~~~~~i~agla~glaaiGagiG~G~~~~~a~~~iaRqPe~~~~l~~~~~ig~Al~Ea~~i~~lvva~illf~   76 (78)
T PRK06876          2 ELIMGLTAIAAAIAIGLAALGAAIGIGLLGGKFLEGAARQPELIPMLQTKMFIGAGLVDAIPIIGVGIALLFLFA   76 (78)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            567788999999999 99999999999999999999999999999999999999999999999999999999996

>PRK13471 F0F1 ATP synthase subunit C; Provisional

Probab=99.88  E-value=2e-22  Score=140.22  Aligned_cols=75  Identities=31%  Similarity=0.574  Sum_probs=72.3

Q ss_pred             hHHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy3709          45 DIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF  119 (119)
Q Consensus        45 ~i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa~  119 (119)
                      ++..+.+++|+|+++ ++++|+|+|+|.++++++|+++||||++++++++|+++++++|+++||+++++++++|++
T Consensus        10 ~~~~~~~~igagla~glaaiGagiG~G~~~~~a~~avaRqPe~~g~l~~~~~ig~aL~Ea~~iy~lvva~lllf~~   85 (85)
T PRK13471         10 ALILLGKYIGAGLCMGIGAIGPGIGEGNIGAHAMDAMARQPEMVGTITTRMLLADAVAETTGIYSLLIAFLILLVL   85 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcChHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            467889999999998 999999999999999999999999999999999999999999999999999999999974

>PRK13469 F0F1 ATP synthase subunit C; Provisional

Probab=99.88  E-value=2.7e-22  Score=137.44  Aligned_cols=75  Identities=33%  Similarity=0.570  Sum_probs=72.5

Q ss_pred             HhHHHHHHHHHHHHHHHhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709          44 RDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  118 (119)
Q Consensus        44 ~~i~~~~~~igAGla~lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa  118 (119)
                      ++++.+++++|+|+++++++|+|+|+|.++++++++++||||+++|++++|+++++|+|+++||+++++++++|+
T Consensus         4 ~~~~~~~~~igagla~laalGagig~G~~~~~a~~a~arqPe~~g~l~~~~~i~~al~Eal~i~glvva~illf~   78 (79)
T PRK13469          4 KAFVMGMSAIGAGIAALAGIGAGIGIGIATGKAVEAVGRQPEASGKIMSTMLLGAALAEATAIYGLVIAIILLFV   78 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            567889999999999999999999999999999999999999999999999999999999999999999999996

>PRK08482 F0F1 ATP synthase subunit C; Validated

Probab=99.88  E-value=4e-22  Score=143.38  Aligned_cols=74  Identities=28%  Similarity=0.531  Sum_probs=71.6

Q ss_pred             hHHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709          45 DIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  118 (119)
Q Consensus        45 ~i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa  118 (119)
                      ++..+++++|+|+++ ++++|+|+|+|+++++++|+++||||++++++++||+|++++|+++||+++++++++|+
T Consensus        26 ~~i~~~~~igagla~Glaa~GagiG~G~~~~~a~e~iaRqPe~~~~i~~~~~ig~Al~Ea~~i~alvia~illf~  100 (105)
T PRK08482         26 DMIKSYSVLAAGIGLGIAALGGAIGMGNTAAATIAGTARNPGLGGKLMTTMFIALAMIEAQVIYALVIALIALYA  100 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            567888999999999 99999999999999999999999999999999999999999999999999999999996

>CHL00061 atpH ATP synthase CF0 C subunit

Probab=99.88  E-value=4.9e-22  Score=137.07  Aligned_cols=73  Identities=36%  Similarity=0.579  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709          46 IDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  118 (119)
Q Consensus        46 i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa  118 (119)
                      +..+++++++|+++ ++++|+|+|+|.++++++|+++||||++++++++|+++++|+|+++||+++++++++|+
T Consensus         4 ~~~~~~~i~agl~~Gla~lgagig~G~~~~~a~~aiarqPe~~~~l~~~~~i~~al~Ea~aiy~lvvalillf~   77 (81)
T CHL00061          4 LISAASVIAAGLAVGLASIGPGVGQGTAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALALLFA   77 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            56677999999999 99999999999999999999999999999999999999999999999999999999996

>TIGR03322 alt_F1F0_F0_C alternate F1F0 ATPase, F0 subunit C

Probab=99.87  E-value=8.8e-22  Score=137.21  Aligned_cols=75  Identities=21%  Similarity=0.460  Sum_probs=71.6

Q ss_pred             HhHHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709          44 RDIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  118 (119)
Q Consensus        44 ~~i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa  118 (119)
                      -++..+++++|+|+++ ++++|+|+|+|+++++++|+++||||++++++++|+++++++|+++||+++++++++|+
T Consensus         3 ~~~~~~~~~igagl~~gla~igagiG~G~~~~~a~e~iaRqPe~~~~i~~~m~ig~AlvEa~ai~alvia~lllf~   78 (86)
T TIGR03322         3 LTIIAVASIVTAGLTIAIGSIGPALGEGRAVAQALTALAQQPDASNTITRTLFVGLAMIESTAIYCFVVSMILIFA   78 (86)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567888999999998 99999999999999999999999999999999999999999999999999999999986

A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F0 subunit C of this apparent second ATP synthase.

>PRK13468 F0F1 ATP synthase subunit C; Provisional

Probab=99.87  E-value=1.4e-21  Score=135.08  Aligned_cols=73  Identities=25%  Similarity=0.474  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709          46 IDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  118 (119)
Q Consensus        46 i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa  118 (119)
                      +.++++++|+|+++ ++.+|+|+|+|+++++++|+++||||++++++++|+++++++|+++||+++++++++|+
T Consensus         4 ~~~~~~~igaglaigla~lgagig~G~~~~~a~~~iaRqPe~~g~l~~~m~ig~al~E~~ai~alviallllfa   77 (82)
T PRK13468          4 LIAVVSIIAAGLAVSIGAIGPALAEGRAVAAALDAIAQQPDAAGTISRTLFVGLAMIESMAIYCFVVAMILLFA   77 (82)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46788999999999 99999999999999999999999999999999999999999999999999999999996

>PRK13464 F0F1 ATP synthase subunit C; Provisional

Probab=99.86  E-value=1.4e-21  Score=139.81  Aligned_cols=72  Identities=24%  Similarity=0.394  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709          47 DSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  118 (119)
Q Consensus        47 ~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa  118 (119)
                      ..+.+++++|+++ ++++|+|+|+|+++++++|+++||||++++++++||+|++++|+++||+++++++++|+
T Consensus        11 l~~~~~i~agl~iglaaiGagiGiG~v~~~ale~iARQPEa~~~l~t~m~IG~AliEa~ai~alvia~lllFa   83 (101)
T PRK13464         11 LNGLTAVAVALLISLPALGTAIGFGVLGGKYLEGVARQPELGGMLLGRMFIVAAFVDAFAAISIAIGFLVLYA   83 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466899999988 99999999999999999999999999999999999999999999999999999999996

>PRK07159 F0F1 ATP synthase subunit C; Validated

Probab=99.86  E-value=1.4e-21  Score=139.56  Aligned_cols=71  Identities=41%  Similarity=0.765  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709          48 SAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  118 (119)
Q Consensus        48 ~~~~~igAGla~lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa  118 (119)
                      ..++++|+|+++++++|+|+|+|.++++++|++|||||++++++++||+++|++|+++||+++++++++|+
T Consensus        29 ~~~~~igaGLa~laaiGagiG~G~~~~~a~eaiARqPea~~~l~~~~~ig~Al~EalaI~~lvia~lllf~   99 (100)
T PRK07159         29 LKAAYIGAGLAMIGVIGVGLGQGYAFGKAVEAIARNPEAQKQVFKLLFIGSAISETSSIYALLVAFILIFV   99 (100)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            33689999999999999999999999999999999999999999999999999999999999999999996

>PRK05880 F0F1 ATP synthase subunit C; Validated

Probab=99.86  E-value=1.8e-21  Score=134.41  Aligned_cols=72  Identities=33%  Similarity=0.481  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709          47 DSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  118 (119)
Q Consensus        47 ~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa  118 (119)
                      ..+++++|+|+++ ++++|+|+|+|+++++++|+++||||++++++++||+|++++|++.+|++++.++++|+
T Consensus         5 ~~~~~~igagla~glaaiGagiG~G~v~~~a~eaiaRqPEa~~~l~~~m~iG~Al~Ea~~~~~i~~~lif~f~   77 (81)
T PRK05880          5 IAAGALIGGGLIMAGGAIGAGIGDGVAGNALISGVARQPEAQGRLFTPFFITVGLVEAAYFINLAFMALFVFA   77 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4567999999998 99999999999999999999999999999999999999999999999988888888875

>PRK07354 F0F1 ATP synthase subunit C; Validated

Probab=99.86  E-value=3.4e-21  Score=132.57  Aligned_cols=73  Identities=33%  Similarity=0.576  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709          46 IDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  118 (119)
Q Consensus        46 i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa  118 (119)
                      +..+++++|+|+++ ++++|+|+|+|.++++++|+++||||++++++++|+++++|+|+++||+++++++++|+
T Consensus         4 ~~~~~~~igagl~~Gla~lgagig~G~~~~~~~~~iArqPe~~~~~~~~~~i~~al~Ea~ai~~lvvallllf~   77 (81)
T PRK07354          4 ITSAASVVAAALAVGLAAIGPGIGQGNAAGGAVEGIARQPEAEGKIRGTLLLSLAFMESLTIYGLVVALVLLFA   77 (81)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            55677999999999 99999999999999999999999999999999999999999999999999999999996

>TIGR01260 ATP_synt_c ATP synthase, F0 subunit c

Probab=99.84  E-value=5.6e-21  Score=124.53  Aligned_cols=58  Identities=33%  Similarity=0.597  Sum_probs=55.9

Q ss_pred             hhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709          61 GVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  118 (119)
Q Consensus        61 g~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa  118 (119)
                      +++|+|+|+|+++++++|+++||||++++++++|++|++++|+++||+++++++++|+
T Consensus         1 aa~GagiG~G~i~~~a~~~iaRqPe~~~~l~~~~~ig~al~Ea~~i~~lvia~lllfa   58 (58)
T TIGR01260         1 AAIGAAIGIGILGGKFLESAARQPELKPLLRTTMFIGMGLVDAIPMIAVVIALILLFA   58 (58)
T ss_pred             CcchhHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            3579999999999999999999999999999999999999999999999999999985

This model describes the subunit c in F1/F0-ATP synthase, a membrane associated multisubunit complex found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. The functional role of subunit c, which is the part of F0 cluster, has been delineated in-vitro reconstitution experiments. Overall experimental proof exists that demonstrate the electrochemical gradient is converted into a rotational torque that leads to ATP synthesis.

>PRK07874 F0F1 ATP synthase subunit C; Validated

Probab=99.84  E-value=1.6e-20  Score=129.53  Aligned_cols=68  Identities=35%  Similarity=0.575  Sum_probs=64.8

Q ss_pred             HhHHHHHHHHHHHHHHHhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3709          44 RDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFL  114 (119)
Q Consensus        44 ~~i~~~~~~igAGla~lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lviali  114 (119)
                      .|+.++.+++|+|++.   +|+|+|+|+++++++|+++||||++++++++||+|+|++|+++||+++++|+
T Consensus        12 ~~~~~~~~~ig~Glaa---iGagiG~G~~~~~a~e~iARqPEa~~~l~~~m~lG~Al~Ea~~i~~lvia~l   79 (80)
T PRK07874         12 ETTFTGLGAVGYGLAA---IGPGIGVGIVVGKALEGMARQPEMAGQLRTTMFLGIAFVEALALIGLVAGFL   79 (80)
T ss_pred             HHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcCHhHHHhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5778999999999876   6899999999999999999999999999999999999999999999999987

>PRK13467 F0F1 ATP synthase subunit C; Provisional

Probab=99.84  E-value=1.6e-20  Score=125.52  Aligned_cols=63  Identities=32%  Similarity=0.452  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3709          50 AKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLL  115 (119)
Q Consensus        50 ~~~igAGla~lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialil  115 (119)
                      +.++|+|++.   +|+|+|+|+++++++|+++||||++++++++||+|++++|+++||++++++++
T Consensus         3 ~~~i~~Glaa---iGagiG~G~v~~~a~e~iaRqPE~~~~i~~~m~ig~Al~Ea~~i~~lvia~il   65 (66)
T PRK13467          3 LTILALALAC---MGVSLGEGFLMANLFKSAARQPEMIGQLRSLMILGVAFIEGTFFVTLVMSFIL   65 (66)
T ss_pred             HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4577888765   68999999999999999999999999999999999999999999999999986

>COG0636 AtpE F0F1-type ATP synthase, subunit c/Archaeal/vacuolar-type H+-ATPase, subunit K [Energy production and conversion]

Probab=99.82  E-value=6.8e-20  Score=125.49  Aligned_cols=71  Identities=38%  Similarity=0.670  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709          48 SAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  118 (119)
Q Consensus        48 ~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa  118 (119)
                      +++.++++|+++ ++++|+|+|+|+++++++|++|||||+++++|++||++.+++|+++||+++++++++|+
T Consensus         6 ~~~~~i~agl~vGla~lg~gig~G~~~~~~~~~~Ar~P~~~~~l~~~~~i~~~l~E~~~i~~lvialll~f~   77 (79)
T COG0636           6 KGLALIGAGLAVGLAALGAGIGQGIIGAAAVEAVARQPEAAGKLFGKMFIGLALVEALGIYGLVIALLLLFA   77 (79)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            677899999999 99999999999999999999999999999999999999999999999999999999986

>PRK13466 F0F1 ATP synthase subunit C; Provisional

Probab=99.82  E-value=5.6e-20  Score=122.78  Aligned_cols=56  Identities=29%  Similarity=0.479  Sum_probs=53.7

Q ss_pred             HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3709          60 VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLL  115 (119)
Q Consensus        60 lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialil  115 (119)
                      ++++|+|+|+|+++++++|+++||||++++++++||+|++++|+++||+++++|++
T Consensus        10 laa~GagiG~G~~~~~~~e~vaRqPea~~~l~~~~~ig~al~Ea~~i~alvia~l~   65 (66)
T PRK13466         10 LACLGVSIGEGLLVASYLSSTARQPEMQSKLMAGVFLGVAFIEGTFFVTLAMTFVL   65 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            56689999999999999999999999999999999999999999999999999985

>PF00137 ATP-synt_C: ATP synthase subunit C; InterPro: IPR002379 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.69  E-value=2.2e-16  Score=103.74  Aligned_cols=65  Identities=38%  Similarity=0.661  Sum_probs=62.1

Q ss_pred             HHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709          50 AKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  118 (119)
Q Consensus        50 ~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa  118 (119)
                      ++++|+|+++ ++.+|+|+|+|.++++++++++||||    ++++++++.+++|+++||+++++++++|+
T Consensus         1 ~~~l~agl~~gl~~~gsa~g~g~~~~~~~~~~a~~p~----~~~~~li~~~~~E~~~i~glv~~~~l~~~   66 (66)
T PF00137_consen    1 LAYLGAGLAVGLAAIGSAIGQGIAGSAAIGAIARQPE----LFTKMLIGAAFIEALGIYGLVVALLLLFK   66 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGG----HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----cchhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence            4789999999 99999999999999999999999998    88999999999999999999999999985

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases) and V-ATPases (or V1V0-ATPases) are each composed of two linked complexes: the F1 or V1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0 or V0 complex that forms the membrane-spanning pore. The F- and V-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. This entry represents subunit C (also called subunit 9, or proteolipid in F-ATPases, or the 16 kDa proteolipid in V-ATPases) found in the F0 or V0 complex of F- and V-ATPases, respectively. In F-ATPases, ten C subunits form an oligomeric ring that makes up the F0 rotor. The flux of protons through the ATPase channel drives the rotation of the C subunit ring, which in turn is coupled to the rotation of the F1 complex gamma subunit rotor due to the permanent binding between the gamma and epsilon subunits of F1 and the C subunit ring of F0. The sequential protonation and deprotonation of Asp61 of subunit C is coupled to the stepwise movement of the rotor []. In V-ATPases, there are three proteolipid subunits (c, c' and c'') that form part of the proton-conducting pore, each containing a buried glutamic acid residue that is essential for proton transport, and together they form a hexameric ring spanning the membrane [, ]. Structurally, the c subunits consist of a two antiparallel transmembrane helices. Both helices of one c subunit are connected by a loop on the cytoplasmic side []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015991 ATP hydrolysis coupled proton transport, 0033177 proton-transporting two-sector ATPase complex, proton-transporting domain; PDB: 3AOU_D 2DB4_H 2BL2_C 2CYD_A 2XQT_A 2XQS_A 2XQU_E 1WU0_A 1ATY_A 1C17_A ....

>PRK06251 V-type ATP synthase subunit K; Validated

Probab=99.67  E-value=5e-16  Score=111.36  Aligned_cols=70  Identities=23%  Similarity=0.358  Sum_probs=64.5

Q ss_pred             hHHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709          45 DIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  118 (119)
Q Consensus        45 ~i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa  118 (119)
                      +...+.+++|+|+++ ++++|+|+|+|.++++++++++||||..+    +++++++++|+++||+++++++++|+
T Consensus        30 ~~~~~~~~igaGLavGLaaigsgiG~G~~~aaai~aiAr~Pe~~g----~~ii~~al~Ea~aIyglvVa~lLlf~  100 (102)
T PRK06251         30 AQGFAGINIGAGLAVGLAAIGAGIAVGMAAAAGIGVLTERRDMFG----TVLIFVAIGEGIAVYGILFAVLMLFG  100 (102)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            455778999999999 99999999999999999999999997655    68999999999999999999999986

>PRK08344 V-type ATP synthase subunit K; Validated

Probab=99.56  E-value=3.3e-14  Score=108.10  Aligned_cols=71  Identities=30%  Similarity=0.369  Sum_probs=66.8

Q ss_pred             HhHHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3709          44 RDIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF  117 (119)
Q Consensus        44 ~~i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillF  117 (119)
                      .++.++++++++|+++ ++.+++|+|+|.++++.+++++|||   +++|++++++++|+|+++||+++++++++.
T Consensus        83 ~~l~~g~~~i~aGL~vGla~l~sgig~G~v~a~~i~~~ar~P---~~l~~~~ii~~a~~Ea~ai~~lvvallll~  154 (157)
T PRK08344         83 INLGKALALLGAGLLVGLAELLSAIPQGIICASGIGALPRTP---GKTFTQTIILAAYAELMGIFGLVFAILGLS  154 (157)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567899999999999 9999999999999999999999999   689999999999999999999999999875

>PRK14893 V-type ATP synthase subunit K; Provisional

Probab=99.53  E-value=5.1e-14  Score=107.55  Aligned_cols=70  Identities=29%  Similarity=0.409  Sum_probs=64.9

Q ss_pred             hHHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709          45 DIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  118 (119)
Q Consensus        45 ~i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa  118 (119)
                      .+.++++++++|+++ ++.+|+|+|+|.++++++++++||||..+    +++++.++.|+++||+|+++++++|.
T Consensus        86 ~~~~~~~~lgagL~~Gla~~gsgig~G~~~~a~i~~iar~Pe~~~----~~li~~al~Et~~Iyglvv~~lll~~  156 (161)
T PRK14893         86 SVTAGLVAIGAGAAIGFAGLGSGMGQGIASASSVGAVVEDPDMFA----RGIIFSALPETQAIYGFLIAILLMVF  156 (161)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456889999999999 99999999999999999999999998655    68999999999999999999999885

>PRK14893 V-type ATP synthase subunit K; Provisional

Probab=99.52  E-value=9.3e-14  Score=106.10  Aligned_cols=67  Identities=30%  Similarity=0.410  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3709          47 DSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF  117 (119)
Q Consensus        47 ~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillF  117 (119)
                      ...++++|+++++ ++++|+|+|+|+++++++++++||||..    ++++++++++|+++||+++++++++|
T Consensus         7 ~~~~~~lGagla~gla~iGa~iG~g~~~~~~~~~iar~Pe~~----~~~li~~al~Ea~aIyglvia~lll~   74 (161)
T PRK14893          7 GTALAAIGAGVAVGFAGLGSGLGQGIAAAGSVGAVAEDSDMF----ARGIIFSALPETQAIYGFLIAILLLV   74 (161)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH----HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4678999999999 9999999999999999999999999864    57899999999999999999999988

>PRK06271 V-type ATP synthase subunit K; Validated

Probab=99.50  E-value=8.7e-14  Score=110.06  Aligned_cols=69  Identities=25%  Similarity=0.369  Sum_probs=63.0

Q ss_pred             hHHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709          45 DIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  118 (119)
Q Consensus        45 ~i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa  118 (119)
                      +..++++++++|+++ ++.+ +|+|+|.++++++|+++||||.++|    ++++.+++|+++||+++++++++|+
T Consensus       141 ~~~~g~~~~~aGl~~Gla~~-sgig~G~~~~~~~~~~arqPe~~~~----~~i~~a~~Ea~~i~~lvvalil~f~  210 (213)
T PRK06271        141 PGVETIAALGAGLAVGFAGL-SGIGQGITAAGAIGATARDPDAMGK----GLVLAVMPETFAIFGLLIAILIMLG  210 (213)
T ss_pred             chhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcCcHHhhh----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            335688999999998 7777 9999999999999999999998886    4999999999999999999999986

>PRK06558 V-type ATP synthase subunit K; Validated

Probab=99.49  E-value=1.8e-13  Score=104.31  Aligned_cols=71  Identities=20%  Similarity=0.196  Sum_probs=65.5

Q ss_pred             HhHHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709          44 RDIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  118 (119)
Q Consensus        44 ~~i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa  118 (119)
                      .++.++...+++|+++ ++.+++|+++|.++++++++++||||..+    ++++..+|+|+++||+++++++++|.
T Consensus        86 ~~~~~g~~~l~agL~vGl~~l~sgi~~G~~~a~~~~a~a~~pe~~~----~~li~~~~~E~~aI~glvvaill~~~  157 (159)
T PRK06558         86 LSLAQGLAYFAACLPIAIVGLFSAISQGKVAAAGIQILAKRPEEFT----KGIILAAMVETYAILAFVVSFLLLNG  157 (159)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH----HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3567899999999999 99999999999999999999999997555    68999999999999999999999875

>PRK06271 V-type ATP synthase subunit K; Validated

Probab=99.42  E-value=6.2e-13  Score=105.25  Aligned_cols=63  Identities=37%  Similarity=0.444  Sum_probs=58.6

Q ss_pred             HHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709          52 FIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  118 (119)
Q Consensus        52 ~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa  118 (119)
                      .+|+|+++ ++++|+|+|+|.++++++|+++||||.++    +++++.+++|+++||+++++++++|+
T Consensus         2 ~igagla~glaa~Ga~~G~g~~g~a~~~~~ar~Pe~~~----~~li~~al~e~~~Iyglvia~ll~~~   65 (213)
T PRK06271          2 AIGAGLAVGIAGLGSGIGAGITGASGAGVVAEDPNKFG----TAIVFQALPQTQGLYGFLVAILILFV   65 (213)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            47899988 99999999999999999999999998766    58999999999999999999999985

>PRK09621 V-type ATP synthase subunit K; Provisional

Probab=99.41  E-value=1.3e-12  Score=98.11  Aligned_cols=65  Identities=26%  Similarity=0.342  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3709          47 DSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLL  115 (119)
Q Consensus        47 ~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialil  115 (119)
                      .++...+++|+++ ++.+++|+++|.+.++++++++||||..+    +++++.+++|+.+||++++++++
T Consensus        75 ~~~~~~l~aGL~vGla~l~sgigqG~v~a~~i~a~arqPe~~~----k~~i~~alvE~~ai~~lv~a~ll  140 (141)
T PRK09621         75 LSALSGIAIGISVGIALLLSAIMQGKCCASAIQAYARSSEIYG----KSFAAIGIVESFALFAFVFALLL  140 (141)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence            4667889999998 99999999999999999999999998555    57999999999999999999986

>PRK06558 V-type ATP synthase subunit K; Validated

Probab=99.27  E-value=2.4e-11  Score=92.63  Aligned_cols=67  Identities=21%  Similarity=0.278  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709          48 SAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  118 (119)
Q Consensus        48 ~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa  118 (119)
                      ..+.++|+++++ ++.+|+++|+|.++++++++++||||..+|    .++..++.|+++||++++++++++.
T Consensus        14 ~~~~~lGa~laigla~iGsa~G~g~ag~a~~~~~a~~Pe~~~k----~lI~~~l~e~~aIyGlvva~li~~~   81 (159)
T PRK06558         14 AFFAALGAALAVGLSGIGSAKGVGKAGEAAAGLLTEEPEKFGK----ALILQLLPGTQGLYGFVIGFLIWQK   81 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467789999998 999999999999999999999999987765    4799999999999999999999875

>PRK08344 V-type ATP synthase subunit K; Validated

Probab=99.18  E-value=1.3e-10  Score=88.55  Aligned_cols=63  Identities=24%  Similarity=0.289  Sum_probs=58.2

Q ss_pred             HHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3709          50 AKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLL  116 (119)
Q Consensus        50 ~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialill  116 (119)
                      +.++|+++++ ++++|+++|+|..+++++++++||||    +++++++..++.|+.+||+++++++++
T Consensus         2 ~~~lG~~la~gls~iGsa~G~g~ag~aa~g~~~~~P~----~~~~~li~~a~~~t~~IYGlvi~~~i~   65 (157)
T PRK08344          2 YVALGAALAAGLAGAASSFGVGIAGSAAAGAVAEDEK----NFRNALILAGLPMTQTIYGLITLFLIL   65 (157)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH----HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4679999999 99999999999999999999999997    777899999999999999999987664

>PRK06649 V-type ATP synthase subunit K; Validated

Probab=99.01  E-value=3.1e-09  Score=80.34  Aligned_cols=70  Identities=19%  Similarity=0.261  Sum_probs=64.3

Q ss_pred             HHhHHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3709          43 SRDIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLL  116 (119)
Q Consensus        43 ~~~i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialill  116 (119)
                      ..++.+++..+++|+.+ ++...+|+.+|.++...+++++|||    ++|.++++..+|.|+.+||++++++++.
T Consensus        72 ~~s~~~g~~~l~aGL~vGl~gl~Sa~~qG~v~aagi~~~ak~p----~~f~~~ii~~~~~Et~Al~~lv~s~~~~  142 (143)
T PRK06649         72 VMSQTNPWLLLGAGIGGGLAIAASAFAQGKAAAGACDALAETG----KGFANYLLVLGLIETVALFVMVFLMIFK  142 (143)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34667889999999999 8889999999999999999999999    5888999999999999999999999875

>PRK09621 V-type ATP synthase subunit K; Provisional

Probab=98.63  E-value=2.4e-07  Score=69.71  Aligned_cols=64  Identities=19%  Similarity=0.176  Sum_probs=56.8

Q ss_pred             HHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3709          50 AKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF  117 (119)
Q Consensus        50 ~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillF  117 (119)
                      ..++|+++++ ++++|+++|++..+..+.....|+||.++|    .++..++.|+.+||+++++++++.
T Consensus         4 ~~~~G~a~a~~ls~iGsa~G~~~aG~a~~G~~~e~p~~~~~----~~i~~~lP~tq~IYG~ii~~li~~   68 (141)
T PRK09621          4 MSVVGPALAMGLAMIGSAIGCGMAGVASHAVMSRIDEGHGK----IIGLSAMPSSQSIYGLILMLLLND   68 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhhhh----HHHHHHhHHHHHHHHHHHHHHHHH
Confidence            3568999998 999999999999999999999999987665    566677999999999999999874

>KOG0232|consensus

Probab=98.39  E-value=3.7e-07  Score=69.98  Aligned_cols=70  Identities=30%  Similarity=0.434  Sum_probs=64.5

Q ss_pred             hHHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709          45 DIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  118 (119)
Q Consensus        45 ~i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa  118 (119)
                      .+.+++..+++|+.+ +..+++|..+|.++.....+.+|||    +++..|++-+.|.|.+++|+|++++++.+.
T Consensus        83 ~l~~g~i~lsagl~vgl~~~~ag~aigi~gd~gvr~~~qQP----r~fv~~iLiLif~evlGLygLiva~~l~~~  153 (156)
T KOG0232|consen   83 SLFTGFIVLSAGLAVGLAGLSAGLAIGIVGDAGVRGRAQQP----RLFVGMILILIFAEVLGLYGLIVALALLTV  153 (156)
T ss_pred             chhhHHHHHHHHHHhhhcccCCCcCcCccccccchhhhcCc----hhhhhHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            466788889999999 8899999999999999999999999    688889999999999999999999998764

>TIGR01100 V_ATP_synt_C vacuolar ATP synthase 16 kDa proteolipid subunit

Probab=98.30  E-value=4.3e-06  Score=60.63  Aligned_cols=63  Identities=19%  Similarity=0.263  Sum_probs=52.8

Q ss_pred             HHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3709          51 KFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF  117 (119)
Q Consensus        51 ~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillF  117 (119)
                      .++|+++++ ++.+|+++|.+..+..-...=.++||    ++.+.++-.+|.|+.+||+++++++++.
T Consensus         3 ~~lG~a~a~~ls~iGsA~G~~~aG~~~a~~gv~~P~----~~~k~lI~vi~~g~~gIYGlIia~ii~~   66 (108)
T TIGR01100         3 GVMGAAAALVFSALGAAYGTAKSGVGIAAMGVMRPE----LIMKSIIPVVMAGIIAIYGLVVAVLIAG   66 (108)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhcCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            468889988 99999999999988555555555585    6667899999999999999999999875

The principal role V-ATPases are the acidification of intracellular compartments of eukaryotic cells.

>PRK06649 V-type ATP synthase subunit K; Validated

Probab=97.75  E-value=0.00014  Score=55.16  Aligned_cols=63  Identities=24%  Similarity=0.279  Sum_probs=53.5

Q ss_pred             HHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhc-----CCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3709          50 AKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYAR-----NPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF  117 (119)
Q Consensus        50 ~~~igAGla~-lg~~GagiGiG~v~~~aieaiAR-----qPe~~~~l~~~~~lg~Al~Eal~iy~lvialillF  117 (119)
                      ..++|+++++ ++.+|+++|.|..+..+...+.+     +||..    . .++-.++.-+.+||+++++++++.
T Consensus         3 ~g~lG~a~a~~la~iGSA~G~g~aG~Aa~Gv~~~~~~~~~p~~f----~-~lvl~~lP~TqgiYG~vi~~~i~~   71 (143)
T PRK06649          3 IGLIGAAAALGISAIGSALGMGAAGMAAIGAWKRCYMQGKPAPF----L-LIVFVGAPLTQTIYGYILMNTLLG   71 (143)
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHHhHccHhhhcCCchHH----H-HHHHHhchhHHHHHHHHHHHHHHh
Confidence            3578999998 99999999999999988888887     88733    3 677788889999999999998863

>KOG0233|consensus

Probab=96.68  E-value=0.0002  Score=56.51  Aligned_cols=64  Identities=23%  Similarity=0.362  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3709          49 AAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLL  116 (119)
Q Consensus        49 ~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialill  116 (119)
                      .+..+|.++++ +..+|++.|+=..+.+.+.+--|-|    |+.|+-++...|.|+.+||++++++++.
T Consensus        41 ~wa~lGI~l~ialSv~GaawGi~~tGssiiGggVkAP----RI~TKnLisIIfCEavaiyglI~Aivls  105 (196)
T KOG0233|consen   41 MWASLGIALCIALSVLGAAWGIYITGSSIIGGGVKAP----RIKTKNLISIIFCEAVAIYGLIMAIVLS  105 (196)
T ss_pred             HHHHhhHHHhhhhhhhhhheeEEEecceeecCcccCC----cccccceEEEEeehHHHHHHHHHHHHHH
Confidence            34568888888 8999999999999999999999999    7888899999999999999999999875

>KOG0233|consensus

Probab=96.14  E-value=0.0072  Score=47.83  Aligned_cols=69  Identities=22%  Similarity=0.400  Sum_probs=60.8

Q ss_pred             HHhHHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3709          43 SRDIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLL  115 (119)
Q Consensus        43 ~~~i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialil  115 (119)
                      .+++..+...+++|+.+ +.-+-+|+..|++++.+.-+=|.||    .||.+.++--.|--++++|++++++++
T Consensus       119 ~~n~~~gy~lF~aGl~vG~~nl~cglavGIigs~aalaDA~n~----tLFvKilivEIfgSaiGLfGlIvgi~m  188 (196)
T KOG0233|consen  119 AQNLYTGYALFGAGLIVGLCNLVCGLAVGIIGSGAALADAANP----TLFVKILIVEIFGSAIGLFGLIVGIVM  188 (196)
T ss_pred             cchhhhhHHHhhhhHHHHHHHHHhhhhhhhhchhhhhhcccCc----cceeeeehhhhHHHHHHHHHHHHHhhc
Confidence            45678899999999998 7778899999999999999999999    477777888888899999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	119
2xnd_J	72	Crystal Structure Of Bovine F1-C8 Sub-Complex Of At		1e-11

>pdb|2XND|J Chain J, Crystal Structure Of Bovine F1-C8 Sub-Complex Of Atp Synthase Length = 72

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 35/57 (61%)
Query: 46  IDSAAKFIXXXXXXXXXXXXXXXXXXXXXXLIIGYARNPSLKQQLFSYAILGFALSE 102
           ID+AAKFI                      LIIGYARNPSLKQQLFSYAILGFALSE
Sbjct: 1   IDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSE 57

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	119
2xnd_J	72	ATP synthase lipid-binding protein, mitochondrial;	3e-29
4f4s_A	76	ATP synthase subunit 9, mitochondrial; C10 ring, F	8e-27
2wgm_A	89	ATP synthase subunit C, sodium ION specific; F1FO-	6e-21
2xqu_A	82	C15_RING, ATP synthase C chain; membrane protein,	2e-09
1wu0_A	72	ATP synthase C chain; ATPase, membrane protein, hy	6e-07
2x2v_A	69	ATP synthase subunit C; membrane protein, ION tran	4e-06
1a91_A	79	F1FO ATPase subunit C; membrane protein, hydrogen	4e-04

>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus} Length = 72

 Score = 99.8 bits (249), Expect = 3e-29
 Identities = 67/72 (93%), Positives = 71/72 (98%)

Query: 46  IDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMG 105
           ID+AAKFIGAGAATVGVAGSGAGIG+VFGSLIIGYARNPSLKQQLFSYAILGFALSEAMG
Sbjct: 1   IDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMG 60

Query: 106 LFSLMMAFLLLF 117
           LF LM+AFL+LF
Sbjct: 61  LFCLMVAFLILF 72

>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K* Length = 76

 Score = 93.7 bits (233), Expect = 8e-27
 Identities = 44/74 (59%), Positives = 56/74 (75%)

Query: 45  DIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAM 104
            +  AAK+IGAG +T+G+ G+G GI  VF +LI G +RNPS+K  +F  AILGFALSEA 
Sbjct: 2   QLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEAT 61

Query: 105 GLFSLMMAFLLLFA 118
           GLF LM++FLLLF 
Sbjct: 62  GLFCLMVSFLLLFG 75

>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A* Length = 89

 Score = 79.3 bits (196), Expect = 6e-21
 Identities = 27/76 (35%), Positives = 44/76 (57%)

Query: 43  SRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSE 102
           ++ +  AA  +GAG A +   G G G G   G  +   AR P  K  + S  +LG A++E
Sbjct: 6   AKTVVLAASAVGAGTAMIAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAE 65

Query: 103 AMGLFSLMMAFLLLFA 118
           + G++SL++A +LL+A
Sbjct: 66  STGIYSLVIALILLYA 81

>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A Length = 82

 Score = 49.3 bits (118), Expect = 2e-09
 Identities = 25/75 (33%), Positives = 40/75 (53%), Gaps = 1/75 (1%)

Query: 45  DIDSAAKFIGAG-AATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEA 103
           ++ +AA  I A  A  +G  G G G G   G  + G AR P  + ++    +L  A  EA
Sbjct: 4   NLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEA 63

Query: 104 MGLFSLMMAFLLLFA 118
           + ++ L++A +LLFA
Sbjct: 64  LTIYGLVVALVLLFA 78

>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP} Length = 72

 Score = 42.7 bits (101), Expect = 6e-07
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 49  AAKFIGAG-AATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLF 107
           +   + A  A  +G  G+G G G +    I G AR P L+  L +   +G AL EA+ + 
Sbjct: 2   SLGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPII 61

Query: 108 SLMMAFLLLF 117
            ++ +F+ L 
Sbjct: 62  GVVFSFIYLG 71

>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4} Length = 69

 Score = 40.5 bits (95), Expect = 4e-06
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 1/68 (1%)

Query: 51  KFIGAG-AATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSL 109
            F+GA  AA +        +  +  + I G  R P L+  L +   +G  L+EA+ + ++
Sbjct: 2   AFLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAEAVPIIAI 61

Query: 110 MMAFLLLF 117
           +++ L+LF
Sbjct: 62  VISLLILF 69

>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A Length = 79

 Score = 35.6 bits (82), Expect = 4e-04
 Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 45  DIDSAAKFIGAG-AATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEA 103
           +++    ++ A     +   G+  GIG + G  + G AR P L   L +   +   L +A
Sbjct: 3   NLNMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDA 62

Query: 104 MGLFSLMMAFLLLFAF 119
           + + ++ +   ++FA 
Sbjct: 63  IPMIAVGLGLYVMFAV 78

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	119
4f4s_A	76	ATP synthase subunit 9, mitochondrial; C10 ring, F	99.94
2wgm_A	89	ATP synthase subunit C, sodium ION specific; F1FO-	99.88
2xqu_A	82	C15_RING, ATP synthase C chain; membrane protein,	99.87
1wu0_A	72	ATP synthase C chain; ATPase, membrane protein, hy	99.85
2x2v_A	69	ATP synthase subunit C; membrane protein, ION tran	99.85
1a91_A	79	F1FO ATPase subunit C; membrane protein, hydrogen	99.84
2xnd_J	72	ATP synthase lipid-binding protein, mitochondrial;	99.84
2bl2_A	156	V-type sodium ATP synthase subunit K; V-type ATPas	99.65
2bl2_A	156	V-type sodium ATP synthase subunit K; V-type ATPas	99.21

>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*

Probab=99.94  E-value=9.6e-27  Score=158.23  Aligned_cols=76  Identities=58%  Similarity=0.951  Sum_probs=72.4

Q ss_pred             HhHHHHHHHHHHHHHHHhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy3709          44 RDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF  119 (119)
Q Consensus        44 ~~i~~~~~~igAGla~lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa~  119 (119)
                      +|+..++|+||+|++++|.+|+|+|+|+++++++++++||||+++++|+++++|+|++|+++||+|+++|+++|+.
T Consensus         1 M~lv~aak~IGaGlA~ig~~G~giGiG~vfg~~i~~~aRnP~~~~~l~~~~ilG~Al~Ea~glf~LvvA~lllFav   76 (76)
T 4f4s_A            1 MQLVLAAKYIGAGISTIGLLGAGIGIAIVFAALINGVSRNPSIKDTVFPMAILGFALSEATGLFCLMVSFLLLFGV   76 (76)
T ss_dssp             CHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             ChHHHHHHHHHHHHHHHHcchHHHhHHHHHHHHHHHHhcChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            4788999999999999999999999999999999999999999999999999999999999999999999999974

>2wgm_A ATP synthase subunit C, sodium ION specific; F1FO-ATP synthase rotor, sodium-motive force, cell inner membrane, CF(0), membrane, transport; HET: F09; 2.35A {Ilyobacter tartaricus} PDB: 1yce_A*

Probab=99.88  E-value=2.1e-22  Score=139.57  Aligned_cols=77  Identities=35%  Similarity=0.607  Sum_probs=73.6

Q ss_pred             HHHhHHHHHHHHHHHHHHHhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709          42 VSRDIDSAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  118 (119)
Q Consensus        42 ~~~~i~~~~~~igAGla~lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa  118 (119)
                      .++++.++++++|+|+++++++|+|+|+|.++++++|+++||||+++++|++++++++++|+++||+++++++++|+
T Consensus         5 ~~~~~~~~~~~igaGla~la~iGagig~G~v~~~ai~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~   81 (89)
T 2wgm_A            5 FAKTVVLAASAVGAGTAMIAGIGPGVGQGYAAGKAVESVARQPEAKGDIISTMVLGQAVAESTGIYSLVIALILLYA   81 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34578899999999999889999999999999999999999999999999999999999999999999999999986

>2xqu_A C15_RING, ATP synthase C chain; membrane protein, F1FO-ATP synthase rotor, ION (PROT translocation; HET: FME CVM; 1.84A {Arthrospira platensis} PDB: 2xqs_A* 2xqt_A* 2wie_A* 2w5j_A

Probab=99.87  E-value=9e-22  Score=134.39  Aligned_cols=74  Identities=34%  Similarity=0.602  Sum_probs=71.6

Q ss_pred             hHHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709          45 DIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  118 (119)
Q Consensus        45 ~i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa  118 (119)
                      ++.++++++|+|+++ ++++|+|+|+|.++++++++++||||.++++|++++++++|+|+++||+++++++++|+
T Consensus         4 ~~~~~~~~igagl~~Gla~igagig~G~~~~~~i~a~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~ll~f~   78 (82)
T 2xqu_A            4 NLTTAASVIAAALAVGIGSIGPGLGQGQAAGQAVEGIARQPEAEGKIRGTLLLSLAFMEALTIYGLVVALVLLFA   78 (82)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            567899999999999 99999999999999999999999999999999999999999999999999999999986

>1wu0_A ATP synthase C chain; ATPase, membrane protein, hydrogen ION transport, hydrolase; NMR {Bacillus SP}

Probab=99.85  E-value=1.4e-21  Score=130.69  Aligned_cols=69  Identities=30%  Similarity=0.514  Sum_probs=66.6

Q ss_pred             HHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709          50 AKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  118 (119)
Q Consensus        50 ~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa  118 (119)
                      ++++|+|+++ ++++|+|+|+|.++++++|+++||||.++|+|++++++++|+|+++||+++++++++|+
T Consensus         3 ~~~igagl~~Gla~igagig~G~~~~~~~~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lllf~   72 (72)
T 1wu0_A            3 LGVLAAAIAVGLGALGAGIGNGLIVSRTIEGIARQPELRPVLQTTMFIGVALVEALPIIGVVFSFIYLGR   72 (72)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            5789999999 99999999999999999999999999999999999999999999999999999999985

>2x2v_A ATP synthase subunit C; membrane protein, ION transport, ATP synthesis, transmembran CF(0), membrane, transport, C-ring rotor; HET: FME DPV; 2.50A {Bacillus pseudofirmus OF4}

Probab=99.85  E-value=4.1e-21  Score=127.44  Aligned_cols=66  Identities=26%  Similarity=0.562  Sum_probs=64.0

Q ss_pred             HHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3709          52 FIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF  117 (119)
Q Consensus        52 ~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillF  117 (119)
                      ++|+|+++ ++++|+|+|+|.++++++++++||||+++|+|++++++++++|+++||+++++++++|
T Consensus         3 ~igagl~~Gla~igagig~G~~~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~~lvia~lllf   69 (69)
T 2x2v_A            3 FLGAAIAAGLAAVAGAIAVAIIVKATIEGTTRQPELRGTLQTLMFIGVPLAEAVPIIAIVISLLILF   69 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            58999998 9999999999999999999999999999999999999999999999999999999987

>1a91_A F1FO ATPase subunit C; membrane protein, hydrogen ION transport; NMR {Escherichia coli} SCOP: f.17.1.1 PDB: 1c0v_A 1c17_A 1c99_A 1qo1_K 1aty_A 1l6t_A 1ijp_A

Probab=99.84  E-value=1.3e-20  Score=127.99  Aligned_cols=68  Identities=24%  Similarity=0.444  Sum_probs=61.6

Q ss_pred             HHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709          51 KFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  118 (119)
Q Consensus        51 ~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa  118 (119)
                      ..+++++++ ++++|+|+|+|.++++++++++||||+++++|++++++++|+|+++||+++++++++|+
T Consensus         9 ~~~~a~l~~Gla~igagig~G~v~~~~i~~~arqPe~~~~l~~~~ii~~al~Ea~ai~glvia~lllf~   77 (79)
T 1a91_A            9 LYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFA   77 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345555555 55688999999999999999999999999999999999999999999999999999996

>2xnd_J ATP synthase lipid-binding protein, mitochondrial; ATP phosphorylase (H+ transporting), ATP synthesis, F1FO ATP synthase, hydrolase, ION transport; HET: ANP; 3.50A {Bos taurus}

Probab=99.84  E-value=7.5e-23  Score=136.92  Aligned_cols=70  Identities=93%  Similarity=1.394  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3709          48 SAAKFIGAGAATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLF  117 (119)
Q Consensus        48 ~~~~~igAGla~lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillF  117 (119)
                      ++++++|+|+++++++|+|+|+|.++++++|+++||||+++++|++|+++++|+|+++||+++++++++|
T Consensus         3 ~~~~~igaGLa~l~~~gagig~G~~~~~~i~~~arqPe~~~~l~~~~~i~~al~Ea~~i~~lvia~lllf   72 (72)
T 2xnd_J            3 TAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFCLMVAFLILF   72 (72)
T ss_dssp             TTTTTTTTTGGGGGGHHHHHHHHHHHHHHHHHSSSCSCCCCCCSSTTHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4678899999988999999999999999999999999999999999999999999999999999999876

>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*

Probab=99.65  E-value=3.8e-16  Score=117.39  Aligned_cols=71  Identities=23%  Similarity=0.320  Sum_probs=66.4

Q ss_pred             HhHHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709          44 RDIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  118 (119)
Q Consensus        44 ~~i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa  118 (119)
                      .++.++++.+|+|+++ ++.+|+|+|+|.++++++++++||||+++|    ++++++|+|+++||+++++++++|+
T Consensus        84 ~~~~~g~~~igagl~~Gla~lgagigiG~v~~~~i~a~arqPe~~~~----~ii~~a~~Ea~ai~glvia~ll~~~  155 (156)
T 2bl2_A           84 MSVVQGLNFLGASLPIAFTGLFSGIAQGKVAAAGIQILAKKPEHATK----GIIFAAMVETYAILGFVISFLLVLN  155 (156)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHH----HHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3577899999999999 999999999999999999999999987765    8999999999999999999999986

>2bl2_A V-type sodium ATP synthase subunit K; V-type ATPase, K-ring, membrane rotor, sodium transporter, H ION transport, hydrolase, transmembrane; HET: LHG UMQ; 2.1A {Enterococcus hirae} PDB: 2cyd_A* 2db4_A* 3aou_A*

Probab=99.21  E-value=4.4e-11  Score=89.78  Aligned_cols=67  Identities=22%  Similarity=0.337  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3709          48 SAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFA  118 (119)
Q Consensus        48 ~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa  118 (119)
                      ..+.++|+++++ ++.+|+++|+|.++++++++.+||||    ++.++++..++.|+++||++++++++++.
T Consensus        12 ~~~~~lGa~la~~ls~iGaa~G~~~aG~a~~g~~~~~P~----~~~k~li~~~l~e~~~IYGlvva~li~~~   79 (156)
T 2bl2_A           12 MVFAVLAMATATIFSGIGSAKGVGMTGEAAAALTTSQPE----KFGQALILQLLPGTQGLYGFVIAFLIFIN   79 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCGG----GHHHHHHHHHGGGHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            367889999999 99999999999999999999999997    44679999999999999999999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	119
d1c99a_	79	f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escheri	2e-13

>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia coli [TaxId: 562]} Length = 79

class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: F1F0 ATP synthase subunit C
family: F1F0 ATP synthase subunit C
domain: F1F0 ATP synthase subunit C
species: Escherichia coli [TaxId: 562]

 Score = 58.8 bits (143), Expect = 2e-13
 Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 1/76 (1%)

Query: 45  DIDSAAKFIGAG-AATVGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEA 103
           +++    ++ A     +   G+  GIG + G  + G AR P L   L +   +   L +A
Sbjct: 3   NLNMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDA 62

Query: 104 MGLFSLMMAFLLLFAF 119
           + + ++ +   ++FA 
Sbjct: 63  IPMIAVGLGLYVMFAV 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	119
d1c99a_	79	F1F0 ATP synthase subunit C {Escherichia coli [Tax	99.91

>d1c99a_ f.17.1.1 (A:) F1F0 ATP synthase subunit C {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Transmembrane helix hairpin
superfamily: F1F0 ATP synthase subunit C
family: F1F0 ATP synthase subunit C
domain: F1F0 ATP synthase subunit C
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=1.5e-24  Score=146.64  Aligned_cols=76  Identities=21%  Similarity=0.418  Sum_probs=72.7

Q ss_pred             HhHHHHHHHHHHHHHH-HhhhhhHHHhHhhHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy3709          44 RDIDSAAKFIGAGAAT-VGVAGSGAGIGSVFGSLIIGYARNPSLKQQLFSYAILGFALSEAMGLFSLMMAFLLLFAF  119 (119)
Q Consensus        44 ~~i~~~~~~igAGla~-lg~~GagiGiG~v~~~aieaiARqPe~~~~l~~~~~lg~Al~Eal~iy~lvialillFa~  119 (119)
                      ++++.++.++++|+++ ++++|+|+|+|.+++|++|++|||||++++++++||++++++|+++||+++++++++|++
T Consensus         2 e~~~~~~~~l~agl~~gl~aiG~giG~G~~~~~ale~~ARqPE~~~~l~~~m~ig~al~Ea~~i~~lvialillFa~   78 (79)
T d1c99a_           2 ENLNMDLLYMAAAVMMGLAAIGAAIGIGILGGKFLEGAARQPDLIPLLRTQFFIVMGLVDAIPMIAVGLGLYVMFAV   78 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4567888999999998 999999999999999999999999999999999999999999999999999999999985