Psyllid ID: psy3805

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQVKPRSHFKTLSLSLTLLNLLCI
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccEEcccccccccccHHccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEccccccccccEEccccccccccccccccccccccHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccEccccccccHHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEEEccccccccccEHEEHcHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEccccccccEEEEccccccccccccccccEEEcHHHHHHHcc
Coil and Loop (DISEMBL)
melvfdpdlsdgEEAAALVKELILILQCLgtstckmqegalrvdanvsvqrrtdtklgtrsevknigsirgvanaVNFEIVRQVALLEqggvvvnetraydaatkrtvsmrdkeniqvkprshfktLSLSLTLLNLLCI
Flexible Loop (DISEMBL)
melvfdpdlsdGEEAAALVKELILILQCLGTSTCKmqegalrvdanvsvqrrtdtklgtrsevknigsirgvanavNFEIVRQVALleqggvvvnetraydaatkrtvsmrdkeniqvkprshfktlslsltllnllci
Low Complexity Region (SEG)
MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQVKPRSHFKtlslsltllnllCI
Disordered region (IsUnstruct)
**************AAALVKELILILQCLGTSTCKMQEGALRVDANVSVQR****KLGTRSEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAAT******************HFKTLSLSLTLLNLLC*
Disordered Region (DISOPRED)
MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQVKPRSHFKTLSLSLTLLNLLCI
Disordered Region (DISEMBL)
MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQVKPRSHFKTLSLSLTLLNLLCI
Disordered Region (DISPRO)
**L*FDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQVKPRSHFKTLSLSLTLLNLLCI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQVKPRSHFKTLSLSLTLLNLLCI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	139	2.2.26 [Sep-21-2011]
Q16UG2	528	Glutamyl-tRNA(Gln) amidot	N/A	N/A	0.834	0.219	0.658	1e-39
B0W3H3	531	Glutamyl-tRNA(Gln) amidot	N/A	N/A	0.834	0.218	0.641	1e-38
Q9VCD0	516	Glutamyl-tRNA(Gln) amidot	yes	N/A	0.935	0.251	0.559	3e-36
Q7T010	553	Glutamyl-tRNA(Gln) amidot	yes	N/A	0.834	0.209	0.555	3e-30
O75879	557	Glutamyl-tRNA(Gln) amidot	yes	N/A	0.834	0.208	0.547	2e-28
Q99JT1	557	Glutamyl-tRNA(Gln) amidot	yes	N/A	0.834	0.208	0.538	6e-28
A4XHY9	480	Aspartyl/glutamyl-tRNA(As	yes	N/A	0.820	0.237	0.5	2e-25
Q0ACB6	478	Aspartyl/glutamyl-tRNA(As	yes	N/A	0.820	0.238	0.5	9e-25
Q83BM8	477	Aspartyl/glutamyl-tRNA(As	yes	N/A	0.820	0.238	0.464	3e-24
B8GL96	477	Aspartyl/glutamyl-tRNA(As	yes	N/A	0.820	0.238	0.482	4e-24

>sp|Q16UG2|GATB_AEDAE Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial OS=Aedes aegypti GN=AAEL009908 PE=3 SV=1

 Score =  161 bits (408), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 77/117 (65%), Positives = 98/117 (83%), Gaps = 1/117 (0%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           MELVF+PDL  GEEAAALVKELILIL  LG+ +C+M+EGALRVDAN+SV +  +T LGTR
Sbjct: 191 MELVFEPDLETGEEAAALVKELILILTRLGSCSCRMEEGALRVDANISVHKE-NTPLGTR 249

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQ 117
           +EVKNIGS+R VA A+ FEI RQ+ +L+ GG + NETRA+DAA ++T++MRDKE +Q
Sbjct: 250 TEVKNIGSVRAVAQAIEFEIERQIGILDGGGKIFNETRAWDAAGRQTIAMRDKEVVQ 306

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).
Aedes aegypti (taxid: 7159)
EC: 6EC: .EC: 3EC: .EC: 5EC: .EC: -

>sp|B0W3H3|GATB_CULQU Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial OS=Culex quinquefasciatus GN=CPIJ001717 PE=3 SV=1

 Score =  157 bits (398), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 75/117 (64%), Positives = 96/117 (82%), Gaps = 1/117 (0%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           MELVF+PDL  GEEAAALVKELILIL  LG+ +C+M+EGALRVDAN+SV R  +T LGTR
Sbjct: 191 MELVFEPDLETGEEAAALVKELILILTRLGSCSCRMEEGALRVDANISVHRE-NTPLGTR 249

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQ 117
           +EVKNIGS+R VA A+ +EI RQ+ +L+ GG + NETR +DA  ++T++MRDKE +Q
Sbjct: 250 TEVKNIGSVRAVAQAIEYEIARQIDVLDGGGRIFNETRNWDAVERKTIAMRDKEVVQ 306

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Culex quinquefasciatus (taxid: 7176)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|Q9VCD0|GATB_DROME Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial OS=Drosophila melanogaster GN=CG5463 PE=3 SV=2

 Score =  150 bits (378), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 75/134 (55%), Positives = 98/134 (73%), Gaps = 4/134 (2%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           MELVF PDL  GEEAA+LVKELILIL+ L T +CKM+EGALRVDAN+S+ +  D  LG R
Sbjct: 176 MELVFAPDLETGEEAASLVKELILILRRLQTCSCKMEEGALRVDANISIHQEGDP-LGVR 234

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQ--- 117
           +EVKNIGS+R ++ A+ +EI RQ+  +  GGV+ NETR +DA  +RTV+MRDKE +Q   
Sbjct: 235 TEVKNIGSVRSISQAITYEINRQLETVANGGVITNETRNWDAENRRTVAMRDKEVLQDYR 294

Query: 118 VKPRSHFKTLSLSL 131
             P  +   L ++L
Sbjct: 295 FMPEPNLPPLHVNL 308

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Drosophila melanogaster (taxid: 7227)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|Q7T010|GATB_DANRE Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial OS=Danio rerio GN=pet112 PE=2 SV=2

 Score =  130 bits (326), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 65/117 (55%), Positives = 85/117 (72%), Gaps = 1/117 (0%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           MELV +P++  GEEA A V+EL LILQ LGT    M EG LRVDANVSV    +  LG R
Sbjct: 214 MELVMEPEMCCGEEAGAAVRELQLILQALGTCQANMAEGQLRVDANVSVHHPGEP-LGVR 272

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQ 117
           +EVKNI S+R +A A+++EI RQ+ +L+ GG V+NETRA+D+ +  T+ MRDKE +Q
Sbjct: 273 TEVKNINSVRHLAKAIDYEIQRQMEVLQSGGTVLNETRAFDSKSGITIPMRDKEGLQ 329

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|O75879|GATB_HUMAN Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial OS=Homo sapiens GN=PET112 PE=1 SV=1

 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/117 (54%), Positives = 83/117 (70%), Gaps = 1/117 (0%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           +E+V +PD+S GEEAA  V+EL LILQ LGTS   M EG LRVDAN+SV    +  LG R
Sbjct: 218 LEVVLEPDMSCGEEAATAVRELQLILQALGTSQANMAEGQLRVDANISVHHPGEP-LGVR 276

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQ 117
           +EVKN+ SIR +A A+++EI RQ+  LE GG ++NETR++      T+SMRDKE  Q
Sbjct: 277 TEVKNLNSIRFLAKAIDYEIQRQINELENGGEILNETRSFHHKLGCTMSMRDKEGKQ 333

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|Q99JT1|GATB_MOUSE Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial OS=Mus musculus GN=Pet112 PE=2 SV=1

 Score =  122 bits (306), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 63/117 (53%), Positives = 82/117 (70%), Gaps = 1/117 (0%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           +E+V +PDL  GEEAA  V+EL LILQ LGTS   M EG LRVDAN+SV    +  LG R
Sbjct: 218 LEVVLEPDLCCGEEAALAVRELQLILQALGTSQANMAEGQLRVDANISVHHPGEP-LGVR 276

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQ 117
           +EVKN+ S+R +A A+++EI RQ+  LE GG ++NETR++D     T+ MRDKE  Q
Sbjct: 277 TEVKNLNSLRFLAKAIDYEIQRQITELENGGEILNETRSFDYKLGCTMPMRDKEGKQ 333

Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in the mitochondria. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln).

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|A4XHY9|GATB_CALS8 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=gatB PE=3 SV=1

 Score =  114 bits (285), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/114 (50%), Positives = 77/114 (67%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           +E+V +PDL   EE    +++L  ILQ  G S CKMQEG+LRVD N+SV+ +   + GTR
Sbjct: 151 IEIVTEPDLRSSEETRIFLEKLKAILQYTGVSDCKMQEGSLRVDVNLSVRPKGSKEFGTR 210

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKE 114
           +E+KN+ S R V  A+ +E  RQ+ +LE GGVVV ETR +D A   T+SMR KE
Sbjct: 211 TEMKNLNSFRSVVRAIEYEAKRQIEVLESGGVVVQETRRWDEAKGITLSMRTKE 264

Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln).

Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) (taxid: 351627)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|Q0ACB6|GATB_ALHEH Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=gatB PE=3 SV=1

 Score =  112 bits (279), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 57/114 (50%), Positives = 77/114 (67%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           +E+V +PDL    EAAA +K+L  +++ L      MQEG+ R DANVSV+ + + K GTR
Sbjct: 152 LEIVSEPDLRSAAEAAAYMKKLHALVRYLEICDGNMQEGSFRCDANVSVRPKGEEKFGTR 211

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKE 114
           +E+KN+ S R V  A+N+E+ RQ+AL+E GG VV ETR YDA    T SMR KE
Sbjct: 212 AELKNLNSFRFVERAINYEVERQIALIESGGTVVQETRLYDADKGETRSMRTKE 265

Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln).

Alkalilimnicola ehrlichei (strain MLHE-1) (taxid: 187272)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|Q83BM8|GATB_COXBU Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Coxiella burnetii (strain RSA 493 / Nine Mile phase I) GN=gatB PE=3 SV=1

 Score =  110 bits (275), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 53/114 (46%), Positives = 75/114 (65%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           +E+V +PD+   +EA A +K L  +++ +G S   MQEGA R D N+S++ +++ K GTR
Sbjct: 152 LEIVSEPDIRSAQEAVAYLKALHSLVRYIGVSDANMQEGAFRCDVNISLRPKSEEKFGTR 211

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKE 114
           +E+KN+ S R V  A+ FEI RQ  +LE GG +V ETR YDA    T SMR KE
Sbjct: 212 AEIKNVNSFRFVERAILFEINRQKEILENGGTIVQETRLYDAVQDETRSMRTKE 265

Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln).

Coxiella burnetii (strain RSA 493 / Nine Mile phase I) (taxid: 227377)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

>sp|B8GL96|GATB_THISH Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=gatB PE=3 SV=1

 Score =  110 bits (274), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 55/114 (48%), Positives = 75/114 (65%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           +E+V +PD+   +EA A +K+L  +++ L      MQEG+ R DANVSV+R+   K GTR
Sbjct: 152 LEIVSEPDMRSAKEAVAYLKKLHALVRYLEICDGNMQEGSFRCDANVSVRRKGTEKFGTR 211

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKE 114
           +E+KNI S R V  A+N+E+ RQ+ +LE GG VV ETR YD     T SMR KE
Sbjct: 212 AEIKNINSFRFVERAINYEVERQIDILEGGGAVVQETRLYDPDKGETRSMRSKE 265

Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln).

Thioalkalivibrio sp. (strain HL-EbGR7) (taxid: 396588)

EC: 6

EC: .

EC: 3

EC: .

EC: 5

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
91079238	520	PREDICTED: similar to glutamyl-tRNA amid	0.992	0.265	0.591	4e-39
270005000	469	hypothetical protein TcasGA2_TC030768 [T	0.992	0.294	0.592	1e-38
157124557	528	glutamyl-tRNA(Gln) amidotransferase, sub	0.834	0.219	0.658	8e-38
347969914	434	AGAP003454-PA [Anopheles gambiae str. PE	0.942	0.301	0.6	1e-37
170030762	531	aspartyl/glutamyl-tRNA(Asn/Gln) amidotra	0.834	0.218	0.641	9e-37
114051415	515	glutamyl-tRNA amidotransferase subunit B	0.935	0.252	0.589	6e-36
195144920	515	GL24145 [Drosophila persimilis] gi|19410	0.935	0.252	0.574	6e-36
198452506	515	GA18898 [Drosophila pseudoobscura pseudo	0.935	0.252	0.574	9e-36
357626240	521	glutamyl-tRNA amidotransferase subunit B	0.942	0.251	0.585	2e-35
195037062	516	GH19094 [Drosophila grimshawi] gi|193894	0.935	0.251	0.544	5e-35

>gi|91079238|ref|XP_970958.1| PREDICTED: similar to glutamyl-tRNA amidotransferase subunit B [Tribolium castaneum]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 84/142 (59%), Positives = 107/142 (75%), Gaps = 4/142 (2%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           ME+VF+PDLSDGEEAAALVKELI ILQ LGT +CKM+EGALRVDANVS+ R+ +  LG R
Sbjct: 186 MEVVFEPDLSDGEEAAALVKELIAILQRLGTCSCKMEEGALRVDANVSINRQGEA-LGVR 244

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQ--- 117
           +E+KNIGS+RGVA A+ +EI RQ+ + E GG V NETRA+DA  K TVSMRDKE +Q   
Sbjct: 245 TEIKNIGSVRGVAGAIRYEIERQIQVKESGGAVENETRAWDALGKVTVSMRDKEQVQDYR 304

Query: 118 VKPRSHFKTLSLSLTLLNLLCI 139
             P  +   L +++  ++  C+
Sbjct: 305 YMPEPNLPPLHVAMGPVSQGCV 326

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270005000|gb|EFA01448.1| hypothetical protein TcasGA2_TC030768 [Tribolium castaneum]

 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 83/140 (59%), Positives = 107/140 (76%), Gaps = 2/140 (1%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           ME+VF+PDLSDGEEAAALVKELI ILQ LGT +CKM+EGALRVDANVS+ R+ +  LG R
Sbjct: 152 MEVVFEPDLSDGEEAAALVKELIAILQRLGTCSCKMEEGALRVDANVSINRQGEA-LGVR 210

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKE-NIQVK 119
           +E+KNIGS+RGVA A+ +EI RQ+ + E GG V NETRA+DA  K TVSMRDKE + +  
Sbjct: 211 TEIKNIGSVRGVAGAIRYEIERQIQVKESGGAVENETRAWDALGKVTVSMRDKEQDYRYM 270

Query: 120 PRSHFKTLSLSLTLLNLLCI 139
           P  +   L +++  ++  C+
Sbjct: 271 PEPNLPPLHVAMGPVSQGCV 290

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157124557|ref|XP_001654104.1| glutamyl-tRNA(Gln) amidotransferase, subunit-B, putative [Aedes aegypti] gi|122117176|sp|Q16UG2.1|GATB_AEDAE RecName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial; Short=Glu-AdT subunit B; Flags: Precursor gi|108873950|gb|EAT38175.1| AAEL009908-PA [Aedes aegypti]

 Score =  161 bits (408), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 77/117 (65%), Positives = 98/117 (83%), Gaps = 1/117 (0%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           MELVF+PDL  GEEAAALVKELILIL  LG+ +C+M+EGALRVDAN+SV +  +T LGTR
Sbjct: 191 MELVFEPDLETGEEAAALVKELILILTRLGSCSCRMEEGALRVDANISVHKE-NTPLGTR 249

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQ 117
           +EVKNIGS+R VA A+ FEI RQ+ +L+ GG + NETRA+DAA ++T++MRDKE +Q
Sbjct: 250 TEVKNIGSVRAVAQAIEFEIERQIGILDGGGKIFNETRAWDAAGRQTIAMRDKEVVQ 306

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347969914|ref|XP_311741.5| AGAP003454-PA [Anopheles gambiae str. PEST] gi|333467649|gb|EAA07363.5| AGAP003454-PA [Anopheles gambiae str. PEST]

 Score =  160 bits (406), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 81/135 (60%), Positives = 103/135 (76%), Gaps = 4/135 (2%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           MELVF+PDL  GEEAAALVKELILIL  L + +CKM+EGALRVDAN+SV     T LGTR
Sbjct: 84  MELVFEPDLETGEEAAALVKELILILTRLQSCSCKMEEGALRVDANISVHLEG-TPLGTR 142

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQ--- 117
           +EVKNIGS+R VA AV++EI RQ+A+L++GG + NETRA+D+  ++TV+MRDKE +Q   
Sbjct: 143 TEVKNIGSVRAVAQAVDYEIQRQIAVLDEGGTIHNETRAWDSTARKTVAMRDKEVVQDYR 202

Query: 118 VKPRSHFKTLSLSLT 132
             P  +   L L L+
Sbjct: 203 FMPEPNLPPLHLKLS 217

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170030762|ref|XP_001843257.1| aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [Culex quinquefasciatus] gi|353558724|sp|B0W3H3.1|GATB_CULQU RecName: Full=Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial; Short=Glu-AdT subunit B; Flags: Precursor gi|167867933|gb|EDS31316.1| aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [Culex quinquefasciatus]

 Score =  157 bits (398), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 75/117 (64%), Positives = 96/117 (82%), Gaps = 1/117 (0%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           MELVF+PDL  GEEAAALVKELILIL  LG+ +C+M+EGALRVDAN+SV R  +T LGTR
Sbjct: 191 MELVFEPDLETGEEAAALVKELILILTRLGSCSCRMEEGALRVDANISVHRE-NTPLGTR 249

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQ 117
           +EVKNIGS+R VA A+ +EI RQ+ +L+ GG + NETR +DA  ++T++MRDKE +Q
Sbjct: 250 TEVKNIGSVRAVAQAIEYEIARQIDVLDGGGRIFNETRNWDAVERKTIAMRDKEVVQ 306

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114051415|ref|NP_001040315.1| glutamyl-tRNA amidotransferase subunit B [Bombyx mori] gi|87248335|gb|ABD36220.1| glutamyl-tRNA amidotransferase subunit B [Bombyx mori]

 Score =  155 bits (391), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 79/134 (58%), Positives = 101/134 (75%), Gaps = 4/134 (2%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           +E+VF+PDL DGEEAAALVKEL+LI+Q LG  T +M+EGALRVDANVS++R  D  L TR
Sbjct: 179 IEVVFEPDLQDGEEAAALVKELVLIVQRLGACTGRMEEGALRVDANVSIRRPGDP-LSTR 237

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQ--- 117
           +E+KNIGSIRGVA AV +EI RQ  +LE GG ++NETRA+DA  + T+ MRDKE +Q   
Sbjct: 238 TEIKNIGSIRGVAGAVRYEIERQKTVLENGGRIINETRAWDAVGRATIPMRDKEVVQDYR 297

Query: 118 VKPRSHFKTLSLSL 131
             P  +   L ++L
Sbjct: 298 YMPEPNLPPLRVNL 311

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195144920|ref|XP_002013444.1| GL24145 [Drosophila persimilis] gi|194102387|gb|EDW24430.1| GL24145 [Drosophila persimilis]

 Score =  155 bits (391), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 77/134 (57%), Positives = 100/134 (74%), Gaps = 4/134 (2%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           MELVF PDL  GEEAA+LVKEL+LIL+ L T +CKM+EGALRVDAN+S+ +  D  LG R
Sbjct: 175 MELVFAPDLETGEEAASLVKELMLILKRLQTCSCKMEEGALRVDANISIHQEGDP-LGVR 233

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQ--- 117
           +EVKNIGS+R ++ A+ FEI RQ+  + QGGV+ NETR++DA  +RTV+MRDKE +Q   
Sbjct: 234 TEVKNIGSVRSISQAITFEIHRQLEAVAQGGVITNETRSWDAENRRTVAMRDKEVLQDYR 293

Query: 118 VKPRSHFKTLSLSL 131
             P  +   L L+L
Sbjct: 294 FMPEPNLPPLHLNL 307

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198452506|ref|XP_001358812.2| GA18898 [Drosophila pseudoobscura pseudoobscura] gi|198131958|gb|EAL27955.2| GA18898 [Drosophila pseudoobscura pseudoobscura]

 Score =  154 bits (390), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 77/134 (57%), Positives = 100/134 (74%), Gaps = 4/134 (2%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           MELVF PDL  GEEAA+LVKEL+LIL+ L T +CKM+EGALRVDAN+S+ +  D  LG R
Sbjct: 175 MELVFAPDLETGEEAASLVKELMLILRRLQTCSCKMEEGALRVDANISIHQEGDP-LGVR 233

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQ--- 117
           +EVKNIGS+R ++ A+ FEI RQ+  + QGGV+ NETR++DA  +RTV+MRDKE +Q   
Sbjct: 234 TEVKNIGSVRSISQAITFEIHRQLEAVAQGGVITNETRSWDAEHRRTVAMRDKEVLQDYR 293

Query: 118 VKPRSHFKTLSLSL 131
             P  +   L L+L
Sbjct: 294 FMPEPNLPPLHLNL 307

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357626240|gb|EHJ76399.1| glutamyl-tRNA amidotransferase subunit B [Danaus plexippus]

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 79/135 (58%), Positives = 102/135 (75%), Gaps = 4/135 (2%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           +ELVF+PDL DGEEAAALVKEL+LI+Q LG  + +M+EGALRVDANVS++R  D  L TR
Sbjct: 185 IELVFEPDLEDGEEAAALVKELVLIVQRLGACSGRMEEGALRVDANVSLRRFGDP-LSTR 243

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQ--- 117
           +E+KNIGS+RGVA AV+ EI RQ ++LE GG ++NETRA+DA  K T+ MRDKE +Q   
Sbjct: 244 TEIKNIGSVRGVAGAVHHEIERQRSILENGGRIINETRAWDATAKVTIPMRDKEVVQDYR 303

Query: 118 VKPRSHFKTLSLSLT 132
             P  +   L ++L 
Sbjct: 304 YMPEPNLPPLWVNLN 318

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195037062|ref|XP_001989984.1| GH19094 [Drosophila grimshawi] gi|193894180|gb|EDV93046.1| GH19094 [Drosophila grimshawi]

 Score =  152 bits (384), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 73/134 (54%), Positives = 101/134 (75%), Gaps = 4/134 (2%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           MELVF PDL  GEEAA+LVKEL+LIL+ L T +CKM+EGA+RVDAN+S+ +  D   G R
Sbjct: 177 MELVFAPDLETGEEAASLVKELMLILKRLQTCSCKMEEGAMRVDANISIHKEGDP-FGVR 235

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQ--- 117
           +EVKNIGS+R ++ A+++EI RQ+ L+ +GGVV NETR++DA  +RT++MRDKE +Q   
Sbjct: 236 TEVKNIGSVRSISQAISYEINRQLELVAEGGVVTNETRSWDAENRRTIAMRDKEVLQDYR 295

Query: 118 VKPRSHFKTLSLSL 131
             P  +   L ++L
Sbjct: 296 FMPEPNLPPLHVNL 309

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
FB|FBgn0039153	516	CG5463 [Drosophila melanogaste	0.834	0.224	0.615	6.7e-33
UNIPROTKB|Q2KHT5	399	PET112L "PET112-like (Yeast)"	0.834	0.290	0.564	4.5e-27
UNIPROTKB|F1N9W3	495	PET112 "Uncharacterized protei	0.834	0.234	0.589	1.1e-26
UNIPROTKB|F1RSA4	448	LOC100518383 "Uncharacterized	0.834	0.258	0.547	1.9e-26
UNIPROTKB|D6RDU9	357	PET112 "Glutamyl-tRNA(Gln) ami	0.834	0.324	0.547	2.5e-26
UNIPROTKB|O75879	557	PET112 "Glutamyl-tRNA(Gln) ami	0.834	0.208	0.547	1.1e-25
MGI|MGI:2442496	557	Pet112 "PET112 homolog (S. cer	0.834	0.208	0.538	1.9e-25
UNIPROTKB|F6Y2L8	557	PET112 "Glutamyl-tRNA(Gln) ami	0.834	0.208	0.529	2.4e-24
TIGR_CMR|CBU_1475	477	CBU_1475 "glutamyl-tRNA(Gln) a	0.820	0.238	0.464	6e-23
TIGR_CMR|APH_0470	483	APH_0470 "glutamyl-tRNA(Gln) a	0.834	0.240	0.482	1.8e-22

FB|FBgn0039153 CG5463 [Drosophila melanogaster (taxid:7227)]

 Score = 359 (131.4 bits), Expect = 6.7e-33, P = 6.7e-33
 Identities = 72/117 (61%), Positives = 92/117 (78%)

Query:     1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
             MELVF PDL  GEEAA+LVKELILIL+ L T +CKM+EGALRVDAN+S+ +  D  LG R
Sbjct:   176 MELVFAPDLETGEEAASLVKELILILRRLQTCSCKMEEGALRVDANISIHQEGDP-LGVR 234

Query:    61 SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQ 117
             +EVKNIGS+R ++ A+ +EI RQ+  +  GGV+ NETR +DA  +RTV+MRDKE +Q
Sbjct:   235 TEVKNIGSVRSISQAITYEINRQLETVANGGVITNETRNWDAENRRTVAMRDKEVLQ 291

GO:0050567 "glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0006425 "glutaminyl-tRNA aminoacylation" evidence=ISS

UNIPROTKB|Q2KHT5 PET112L "PET112-like (Yeast)" [Bos taurus (taxid:9913)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 66/117 (56%), Positives = 83/117 (70%)

Query:     1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
             +ELV +PD+S GEEAA  V+EL LILQ LGTS   M EG LRVDAN+SV R  +  LG R
Sbjct:   218 LELVLEPDMSCGEEAATAVRELQLILQALGTSQANMAEGQLRVDANISVHRPGEP-LGIR 276

Query:    61 SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQ 117
             +EVKN+ S R +A A+++EI RQ+  LE GG ++NETR++D     TV MRDKE  Q
Sbjct:   277 TEVKNLNSARFLAKAIDYEIQRQINELENGGEILNETRSFDFKLGCTVPMRDKEGKQ 333

GO:0070681 "glutaminyl-tRNAGln biosynthesis via transamidation" evidence=IEA

GO:0050567 "glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity" evidence=IEA

GO:0032543 "mitochondrial translation" evidence=IEA

GO:0030956 "glutamyl-tRNA(Gln) amidotransferase complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1N9W3 PET112 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 304 (112.1 bits), Expect = 1.1e-26, P = 1.1e-26
 Identities = 69/117 (58%), Positives = 82/117 (70%)

Query:     1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
             ME+V +PD+  GEEAAA V+EL LILQ LG+S   M EG LRVDANVSV    +   G R
Sbjct:   156 MEVVMEPDMCCGEEAAAAVRELQLILQTLGSSQAIMAEGQLRVDANVSVHHPGEP-YGVR 214

Query:    61 SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQ 117
             +EVKNI SIR +  AV++EI RQ+  LE GG VVNETRA+D+    TV MRDKE  Q
Sbjct:   215 TEVKNINSIRFLTKAVDYEIQRQIKELENGGTVVNETRAFDSKLGCTVPMRDKEGKQ 271

GO:0005739 "mitochondrion" evidence=IEA

GO:0030956 "glutamyl-tRNA(Gln) amidotransferase complex" evidence=IEA

GO:0032543 "mitochondrial translation" evidence=IEA

GO:0050567 "glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity" evidence=IEA

GO:0070681 "glutaminyl-tRNAGln biosynthesis via transamidation" evidence=IEA

UNIPROTKB|F1RSA4 LOC100518383 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 299 (110.3 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 64/117 (54%), Positives = 83/117 (70%)

Query:     1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
             +E+V +PD+S GEEAA  V+EL LILQ LGTS   M EG LRVDAN+SV    +  LG R
Sbjct:   109 LEVVLEPDMSCGEEAATAVRELQLILQALGTSQANMAEGQLRVDANISVHHPGEP-LGIR 167

Query:    61 SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQ 117
             +EVKN+ S R +A A+++EI RQ++ LE GG ++NETR++D     TV MRDKE  Q
Sbjct:   168 TEVKNLNSARFLAKAIDYEIQRQISELENGGEILNETRSFDYKLGCTVPMRDKEGKQ 224

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

UNIPROTKB|D6RDU9 PET112 "Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 64/117 (54%), Positives = 83/117 (70%)

Query:     1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
             +E+V +PD+S GEEAA  V+EL LILQ LGTS   M EG LRVDAN+SV    +  LG R
Sbjct:   218 LEVVLEPDMSCGEEAATAVRELQLILQALGTSQANMAEGQLRVDANISVHHPGEP-LGVR 276

Query:    61 SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQ 117
             +EVKN+ SIR +A A+++EI RQ+  LE GG ++NETR++      T+SMRDKE  Q
Sbjct:   277 TEVKNLNSIRFLAKAIDYEIQRQINELENGGEILNETRSFHHKLGCTMSMRDKEGKQ 333

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

UNIPROTKB|O75879 PET112 "Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 297 (109.6 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 64/117 (54%), Positives = 83/117 (70%)

Query:     1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
             +E+V +PD+S GEEAA  V+EL LILQ LGTS   M EG LRVDAN+SV    +  LG R
Sbjct:   218 LEVVLEPDMSCGEEAATAVRELQLILQALGTSQANMAEGQLRVDANISVHHPGEP-LGVR 276

Query:    61 SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQ 117
             +EVKN+ SIR +A A+++EI RQ+  LE GG ++NETR++      T+SMRDKE  Q
Sbjct:   277 TEVKNLNSIRFLAKAIDYEIQRQINELENGGEILNETRSFHHKLGCTMSMRDKEGKQ 333

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0030956 "glutamyl-tRNA(Gln) amidotransferase complex" evidence=IDA

GO:0050567 "glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity" evidence=IDA

GO:0070681 "glutaminyl-tRNAGln biosynthesis via transamidation" evidence=IDA

GO:0032543 "mitochondrial translation" evidence=IMP

GO:0008135 "translation factor activity, nucleic acid binding" evidence=TAS

GO:0006412 "translation" evidence=TAS

MGI|MGI:2442496 Pet112 "PET112 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 295 (108.9 bits), Expect = 1.9e-25, P = 1.9e-25
 Identities = 63/117 (53%), Positives = 82/117 (70%)

Query:     1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
             +E+V +PDL  GEEAA  V+EL LILQ LGTS   M EG LRVDAN+SV    +  LG R
Sbjct:   218 LEVVLEPDLCCGEEAALAVRELQLILQALGTSQANMAEGQLRVDANISVHHPGEP-LGVR 276

Query:    61 SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQ 117
             +EVKN+ S+R +A A+++EI RQ+  LE GG ++NETR++D     T+ MRDKE  Q
Sbjct:   277 TEVKNLNSLRFLAKAIDYEIQRQITELENGGEILNETRSFDYKLGCTMPMRDKEGKQ 333

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0006412 "translation" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0016884 "carbon-nitrogen ligase activity, with glutamine as amido-N-donor" evidence=IEA

GO:0030956 "glutamyl-tRNA(Gln) amidotransferase complex" evidence=ISO

GO:0032543 "mitochondrial translation" evidence=ISO

GO:0050567 "glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity" evidence=ISO

GO:0070681 "glutaminyl-tRNAGln biosynthesis via transamidation" evidence=ISO

UNIPROTKB|F6Y2L8 PET112 "Glutamyl-tRNA(Gln) amidotransferase subunit B, mitochondrial" [Canis lupus familiaris (taxid:9615)]

 Score = 285 (105.4 bits), Expect = 2.4e-24, P = 2.4e-24
 Identities = 62/117 (52%), Positives = 80/117 (68%)

Query:     1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
             +E+V +PD+S GEEAA  V+EL LILQ LGTS   M EG LRVDAN+SV    +  LG R
Sbjct:   218 LEVVLEPDMSCGEEAATAVRELQLILQALGTSQANMAEGQLRVDANISVHHPGEP-LGVR 276

Query:    61 SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQ 117
             +EVKN+ S R +A A++ EI RQ+  LE G  ++NETR++D     T+ MRDKE  Q
Sbjct:   277 TEVKNLNSARFLARAIDSEIERQINELENGREILNETRSFDCKLGCTIPMRDKEGKQ 333

GO:0005739 "mitochondrion" evidence=IEA

GO:0070681 "glutaminyl-tRNAGln biosynthesis via transamidation" evidence=IEA

GO:0050567 "glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity" evidence=IEA

GO:0032543 "mitochondrial translation" evidence=IEA

GO:0030956 "glutamyl-tRNA(Gln) amidotransferase complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

TIGR_CMR|CBU_1475 CBU_1475 "glutamyl-tRNA(Gln) amidotransferase, B subunit" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 270 (100.1 bits), Expect = 6.0e-23, P = 6.0e-23
 Identities = 53/114 (46%), Positives = 75/114 (65%)

Query:     1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
             +E+V +PD+   +EA A +K L  +++ +G S   MQEGA R D N+S++ +++ K GTR
Sbjct:   152 LEIVSEPDIRSAQEAVAYLKALHSLVRYIGVSDANMQEGAFRCDVNISLRPKSEEKFGTR 211

Query:    61 SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKE 114
             +E+KN+ S R V  A+ FEI RQ  +LE GG +V ETR YDA    T SMR KE
Sbjct:   212 AEIKNVNSFRFVERAILFEINRQKEILENGGTIVQETRLYDAVQDETRSMRTKE 265

GO:0006424 "glutamyl-tRNA aminoacylation" evidence=ISS

TIGR_CMR|APH_0470 APH_0470 "glutamyl-tRNA(Gln) amidotransferase, B subunit" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 266 (98.7 bits), Expect = 1.8e-22, P = 1.8e-22
 Identities = 56/116 (48%), Positives = 78/116 (67%)

Query:     1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
             ME+V DPDL   EEAA  +K+L +IL+ +G  +  M+ GALR DANVSV++  ++ LG R
Sbjct:   158 MEIVTDPDLRSPEEAAEYLKKLRIILRYIGACSGDMENGALRCDANVSVRKVGESALGVR 217

Query:    61 SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENI 116
             SE+KN+ SI+ VA A+ +E +R V +LE GG V   T  YD  T  T +MR KE++
Sbjct:   218 SEIKNLNSIKYVAQAIKYEAMRHVEVLESGGKVEQSTLLYDVDTGTTRTMRSKEDV 273

GO:0006424 "glutamyl-tRNA aminoacylation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VCD0	GATB_DROME	6, ., 3, ., 5, ., -	0.5597	0.9352	0.2519	yes	N/A
A9VWZ8	GATB_METEP	6, ., 3, ., 5, ., -	0.5087	0.8129	0.2306	yes	N/A
Q7T010	GATB_DANRE	6, ., 3, ., 5, ., -	0.5555	0.8345	0.2097	yes	N/A
Q99JT1	GATB_MOUSE	6, ., 3, ., 5, ., -	0.5384	0.8345	0.2082	yes	N/A
Q98ND3	GATB_RHILO	6, ., 3, ., 5, ., -	0.5087	0.8129	0.2264	yes	N/A
O75879	GATB_HUMAN	6, ., 3, ., 5, ., -	0.5470	0.8345	0.2082	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.5	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	139
PRK05477	474	PRK05477, gatB, aspartyl/glutamyl-tRNA amidotransf	2e-51
pfam02934	288	pfam02934, GatB_N, GatB/GatE catalytic domain	7e-51
COG0064	483	COG0064, GatB, Asp-tRNAAsn/Glu-tRNAGln amidotransf	1e-48
TIGR00133	478	TIGR00133, gatB, aspartyl/glutamyl-tRNA(Asn/Gln) a	2e-38
PLN02751	544	PLN02751, PLN02751, glutamyl-tRNA(Gln) amidotransf	1e-27
TIGR00134	620	TIGR00134, gatE_arch, glutamyl-tRNA(Gln) amidotran	3e-04

>gnl|CDD|235489 PRK05477, gatB, aspartyl/glutamyl-tRNA amidotransferase subunit B; Validated

 Score =  169 bits (430), Expect = 2e-51
 Identities = 56/114 (49%), Positives = 75/114 (65%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           +E+V +PD+   EEA A +K+L  IL+ LG S   M+EG+LR DANVSV+ +   + GTR
Sbjct: 151 IEIVSEPDMRSPEEARAYLKKLRSILRYLGISDGNMEEGSLRCDANVSVRPKGQEEFGTR 210

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKE 114
            E+KN+ S R V  A+ +EI RQ+ +LE GG VV ETR +D     T SMR KE
Sbjct: 211 VEIKNLNSFRFVEKAIEYEIERQIEILESGGEVVQETRLFDEDKGETRSMRSKE 264

Length = 474

>gnl|CDD|217294 pfam02934, GatB_N, GatB/GatE catalytic domain

 Score =  162 bits (413), Expect = 7e-51
 Identities = 58/115 (50%), Positives = 77/115 (66%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           +E+V +PD+   EEA A +K+L  IL+ LG S   M+EG+LR DANVSV+ +   + GTR
Sbjct: 149 IEIVTEPDIRSPEEARAYLKKLRQILRYLGVSDGNMEEGSLRCDANVSVRPKGSEEFGTR 208

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKEN 115
            E+KN+ S R V  A+ +EI RQ+ LLE+GG V  ETR +D  T  TVSMR KE 
Sbjct: 209 VEIKNLNSFRFVEKAIEYEIERQIELLEEGGKVPQETRLWDEDTGETVSMRSKEG 263

This domain is found in the GatB and GatE proteins. Length = 288

>gnl|CDD|223142 COG0064, GatB, Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) [Translation, ribosomal structure and biogenesis]

 Score =  161 bits (411), Expect = 1e-48
 Identities = 57/115 (49%), Positives = 78/115 (67%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           +E+V +PD+   EEA A +K+L  IL+ LG S   M+EG++R DANVSV+ +   + GTR
Sbjct: 156 IEIVTEPDIRSPEEARAYLKKLRSILRYLGISDGNMEEGSMRCDANVSVRPKGQEEFGTR 215

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKEN 115
            E+KN+ S R V  A+ +EI RQ+ LLE GG +  ETR +D AT +TVSMR KE 
Sbjct: 216 VEIKNLNSFRNVEKAIEYEIQRQIELLESGGEIEQETRRFDEATGKTVSMRSKEE 270

Length = 483

>gnl|CDD|232843 TIGR00133, gatB, aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit

 Score =  134 bits (340), Expect = 2e-38
 Identities = 52/115 (45%), Positives = 75/115 (65%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           +E+V  PD++  +EA A +K+L  IL+ LG S   ++EG++R D NVS++ +    LGTR
Sbjct: 154 IEIVTKPDINSPKEARAFLKKLRQILRYLGISDGNLEEGSMRCDVNVSIRLKGQEHLGTR 213

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKEN 115
            E+KNI S +G+  A+ +EI RQV  L +G  VV ETR +D  +  TVSMR KE 
Sbjct: 214 VEIKNINSFKGIEKAIKYEIERQVKALIRGEEVVQETRTFDEKSNITVSMRSKET 268

The heterotrimer GatABC is responsible for transferring the NH2 group that converts Glu to Gln, or Asp to Asn after the Glu or Asp has been ligated to the tRNA for Gln or Asn, respectively. In Lactobacillus, GatABC is responsible only for tRNA(Gln). In the Archaea, GatABC is responsible only for tRNA(Asn), while GatDE is responsible for tRNA(Gln). In lineages that include Thermus, Chlamydia, or Acidithiobacillus, the GatABC complex catalyzes both [Protein synthesis, tRNA aminoacylation]. Length = 478

>gnl|CDD|215400 PLN02751, PLN02751, glutamyl-tRNA(Gln) amidotransferase

 Score =  106 bits (265), Expect = 1e-27
 Identities = 49/116 (42%), Positives = 73/116 (62%), Gaps = 2/116 (1%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           +E+V +PD+  G EAA    EL  +++ LG S   MQEG+LR D NVS++     + GT+
Sbjct: 217 LEIVSEPDMRTGIEAAEYGAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQEEFGTK 276

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGV--VVNETRAYDAATKRTVSMRDKE 114
            E+KN+ S   ++ A++FEI RQ+ L  QG    +V ETR +D   ++TV+MR KE
Sbjct: 277 VEIKNMNSFSAMSRAIDFEISRQILLHRQGQGDEIVQETRLWDEGAQKTVTMRKKE 332

Length = 544

>gnl|CDD|213509 TIGR00134, gatE_arch, glutamyl-tRNA(Gln) amidotransferase, subunit E

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 27/88 (30%), Positives = 44/88 (50%), Gaps = 8/88 (9%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           +E+  DPD+SD + A  +   +  IL+   T   K   G +R D N+S+      + G R
Sbjct: 183 VEITTDPDISDPQMAKEVAYRIGQILR--STGKVKRGLGTIRQDLNISI------RDGAR 234

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLE 88
            EVK +  +  +   V  E+ RQ+ LL+
Sbjct: 235 VEVKGVQDLDLIPKIVEREVKRQLNLLK 262

This peptide is found only in the Archaea. It is paralogous to the gatB-encoded subunit of Glu-tRNA(Gln) amidotransferase. The GatABC system operates in many bacteria to convert Glu-tRNA(Gln) into Gln-tRNA(Gln). However, the homologous system in archaea instead converts Asp-tRNA(Asn) to Asn-tRNA(Asn). Glu-tRNA(Gln) is converted to Gln-tRNA(Gln) by a heterodimeric amidotransferase of GatE (this protein) and GatD. The Archaea have an Asp-tRNA(Asn) amidotransferase instead of an Asp--tRNA ligase, but the genes have not been identified. It is likely that this protein replaces gatB in Asp-tRNA(Asn) amidotransferase but that both enzymes share gatA [Protein synthesis, tRNA aminoacylation]. Length = 620

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	139
PF02934	289	GatB_N: GatB/GatE catalytic domain; InterPro: IPR0	100.0
PRK05477	474	gatB aspartyl/glutamyl-tRNA amidotransferase subun	100.0
TIGR00133	478	gatB glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn)	100.0
COG0064	483	GatB Asp-tRNAAsn/Glu-tRNAGln amidotransferase B su	100.0
PLN02751	544	glutamyl-tRNA(Gln) amidotransferase	100.0
KOG2438|consensus	505		100.0
PRK04028	630	glutamyl-tRNA(Gln) amidotransferase subunit E; Val	100.0
TIGR00134	620	gatE_arch glutamyl-tRNA(Gln) amidotransferase, sub	100.0
COG2511	631	GatE Archaeal Glu-tRNAGln amidotransferase subunit	99.7

>PF02934 GatB_N: GatB/GatE catalytic domain; InterPro: IPR006075 Glutamyl-tRNA(Gln) amidotransferase subunit B (6

Probab=100.00  E-value=8e-56  Score=369.70  Aligned_cols=135  Identities=43%  Similarity=0.624  Sum_probs=115.1

Q ss_pred             CeEecCCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHHH
Q psy3805           1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEI   80 (139)
Q Consensus         1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE~   80 (139)
                      |||||+|||+|++||++|+++|+++|+|+|+|+|+||+|+|||||||||++.+...+|+||||||||||++|++||+||+
T Consensus       150 iEIVTePd~~s~~EA~~~~~~L~~il~~lgvs~~~me~GslR~DvNVSv~~~g~~~~g~rvEIKNlnS~~~i~~AI~~Ei  229 (289)
T PF02934_consen  150 IEIVTEPDIRSPEEAAAFLKKLRRILRYLGVSDGNMEEGSLRCDVNVSVRPKGEEKFGTRVEIKNLNSFRFIEKAIEYEI  229 (289)
T ss_dssp             EEEEE-TTB-SHHHHHHHHHHHHHHHHHHTSB--SGGGTSEEEEEEEEECETTSSSTS-EEEEEEE-SHHHHHHHHHHHH
T ss_pred             eEEeeCCCCCCHHHHHHHHHHHHHHHHhcCcccCccccCcEEeeceeeecCCCCCCCcceEEEecccCHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999998888999999999999999999999999


Q ss_pred             HHHHHHHHcCCeeecccceeEcCCCeeeccccCCCCCCCCCC---Cccccccchhhhh
Q psy3805          81 VRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQVKPRS---HFKTLSLSLTLLN  135 (139)
Q Consensus        81 ~RQ~~~l~~G~~v~~ETR~~d~~~~~T~~~R~KE~~~DYr~~---~~p~~~l~~~~~~  135 (139)
                      .||.++|+.|+.|.||||+||+.+++|++||+||.+.||||+   +||.|.++++.++
T Consensus       230 ~RQ~~~l~~g~~v~~eTR~~d~~~~~T~~mR~Ke~~~DYRy~pepdlppi~i~~~~i~  287 (289)
T PF02934_consen  230 ERQIELLENGGEVEQETRGWDEDKGETVSMRSKEGAADYRYFPEPDLPPIVISDEWIE  287 (289)
T ss_dssp             HHHHHHHHHTT---EEEEEEETTTTEEEEEEEESSS----EEE-TTS--EE--HHHHH
T ss_pred             HHHHHHHHcCCCeeeecccccCCCCcEeecccCCCccCcCcccCCCCCcEEcCHHHHh
Confidence            999999999999999999999999999999999999999876   9999999999875

3.5 from EC) [] is a microbial enzyme that furnishes a means for formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu-tRNA(Gln). The enzyme is composed of three subunits: A (an amidase), B and C. It also exists in eukaryotes as a protein targeted to the mitochondria. ; GO: 0016874 ligase activity; PDB: 3H0M_H 3H0R_K 3H0L_K 3AL0_B 3IP4_B 2DF4_B 2G5I_B 2F2A_B 2G5H_B 2DQN_B ....

>PRK05477 gatB aspartyl/glutamyl-tRNA amidotransferase subunit B; Validated

Probab=100.00  E-value=2.1e-54  Score=380.54  Aligned_cols=136  Identities=43%  Similarity=0.600  Sum_probs=132.3

Q ss_pred             CeEecCCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHHH
Q psy3805           1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEI   80 (139)
Q Consensus         1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE~   80 (139)
                      |||||+|||+||+||++|+++|+++|+|+|+|||+|++|+|||||||||++.|+..+|+||||||||||++|++||+||+
T Consensus       151 iEIVTePd~~s~~eA~~~~~~L~~ilr~~g~sd~~me~GslR~DvNVSir~~g~~~~G~RvEIKNlnS~~~i~~Ai~yEi  230 (474)
T PRK05477        151 IEIVSEPDMRSPEEARAYLKKLRSILRYLGISDGNMEEGSLRCDANVSVRPKGQEEFGTRVEIKNLNSFRFVEKAIEYEI  230 (474)
T ss_pred             EEEeccCCCCCHHHHHHHHHHHHHHHHHhCCCcCccccCceEEeeeEEeccCCcccCCceeEEeccccHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999998789999999999999999999999999


Q ss_pred             HHHHHHHHcCCeeecccceeEcCCCeeeccccCCCCCCCCCC---Cccccccchhhhhh
Q psy3805          81 VRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQVKPRS---HFKTLSLSLTLLNL  136 (139)
Q Consensus        81 ~RQ~~~l~~G~~v~~ETR~~d~~~~~T~~~R~KE~~~DYr~~---~~p~~~l~~~~~~~  136 (139)
                      .||.++|+.|+.|.||||+||+++|+|++||+||++.||||+   +||.|.++++.++-
T Consensus       231 ~RQ~~ll~~G~~v~qETR~~d~~~g~T~~mR~Ke~a~DYRyfPepDlppi~i~~~~i~~  289 (474)
T PRK05477        231 ERQIEILESGGEVVQETRLFDEDKGETRSMRSKEEAHDYRYFPEPDLPPLEISDEWIEE  289 (474)
T ss_pred             HHHHHHHHcCCCeecccCCcCCCCCeeeecccCCcccccCCCCCCCCCceecCHHHHHH
Confidence            999999999999999999999999999999999999999887   99999999988764

>TIGR00133 gatB glutamyl-tRNA(Gln) and/or aspartyl-tRNA(Asn) amidotransferase, B subunit

Probab=100.00  E-value=2.6e-54  Score=380.25  Aligned_cols=136  Identities=39%  Similarity=0.582  Sum_probs=132.3

Q ss_pred             CeEecCCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHHH
Q psy3805           1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEI   80 (139)
Q Consensus         1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE~   80 (139)
                      |||||+|||+||+||++|+++||++|+|+|+|||+||+|+|||||||||++.|...+|+||||||||||++|++||+||+
T Consensus       154 iEIVTePd~~s~eeA~~~~~~L~~ilr~~gvsdg~me~GslR~DvNVSir~~g~~~~g~RvEIKNlnS~~~i~kAI~yE~  233 (478)
T TIGR00133       154 IEIVTKPDINSPKEARAFLKKLRQILRYLGISDGNLEEGSMRCDVNVSIRLKGQEHLGTRVEIKNINSFKGIEKAIKYEI  233 (478)
T ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcccCceeeeeeeecccCCCCCCcCeeEEeCcccHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999998888999999999999999999999999


Q ss_pred             HHHHHHHHcCCeeecccceeEcCCCeeeccccCCCCCCCCCC---Cccccccchhhhhh
Q psy3805          81 VRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQVKPRS---HFKTLSLSLTLLNL  136 (139)
Q Consensus        81 ~RQ~~~l~~G~~v~~ETR~~d~~~~~T~~~R~KE~~~DYr~~---~~p~~~l~~~~~~~  136 (139)
                      .||.++|+.|++|.||||+||+.+++|++||+||++.||||+   +||.|.++++.++-
T Consensus       234 ~RQ~~ll~~G~~i~qeTr~~d~~~~~T~~mR~Ke~a~DYRyfPEpDLppi~i~~~~i~~  292 (478)
T TIGR00133       234 ERQVKALIRGEEVVQETRTFDEKSNITVSMRSKETSIDYRYFPEPDLPPINIDELLVKE  292 (478)
T ss_pred             HHHHHHHHcCCCeEeeeccccCCCCeEeecccCCCccccCCCCCCCCCceecCHHHHHH
Confidence            999999999999999999999999999999999999999987   99999999987764

The heterotrimer GatABC is responsible for transferring the NH2 group that converts Glu to Gln, or Asp to Asn after the Glu or Asp has been ligated to the tRNA for Gln or Asn, respectively. In Lactobacillus, GatABC is responsible only for tRNA(Gln). In the Archaea, GatABC is responsible only for tRNA(Asn), while GatDE is responsible for tRNA(Gln). In lineages that include Thermus, Chlamydia, or Acidithiobacillus, the GatABC complex catalyzes both.

>COG0064 GatB Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112 homolog) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.8e-53  Score=374.22  Aligned_cols=136  Identities=43%  Similarity=0.636  Sum_probs=132.9

Q ss_pred             CeEecCCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHHH
Q psy3805           1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEI   80 (139)
Q Consensus         1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE~   80 (139)
                      |||||+|||+||+||++|+++||.+|+|+|||||+||+|+|||||||||++.|+..+|+||||||||||++|++||+||+
T Consensus       156 iEIVtePdirs~~eA~ayl~~Lr~ilrylgisd~~meeGsmR~DaNvSvr~~g~~~~GtrvEiKNiNS~~~v~kAi~yE~  235 (483)
T COG0064         156 IEIVTEPDIRSPEEARAYLKKLRSILRYLGISDGNMEEGSMRCDANVSVRPKGQEEFGTRVEIKNLNSFRNVEKAIEYEI  235 (483)
T ss_pred             eeeecccCCCCHHHHHHHHHHHHHHHHHcCCCCCCcccCceEeeeeeeeccccccccCceeeeecCccHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCeeecccceeEcCCCeeeccccCCCCCCCCCC---Cccccccchhhhhh
Q psy3805          81 VRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQVKPRS---HFKTLSLSLTLLNL  136 (139)
Q Consensus        81 ~RQ~~~l~~G~~v~~ETR~~d~~~~~T~~~R~KE~~~DYr~~---~~p~~~l~~~~~~~  136 (139)
                      .||+++++.|+.+.||||+||+.+|.|++||+||++.|||||   +||-+.++++.++-
T Consensus       236 ~RQ~~~l~~g~~i~qeTR~~d~~~g~T~~mR~KE~a~DYRYfpePDl~p~~is~~~i~~  294 (483)
T COG0064         236 QRQIELLESGGEIEQETRRFDEATGKTVSMRSKEEAEDYRYFPEPDLPPLEISDEWIEE  294 (483)
T ss_pred             HHHHHHHHcCCCeeehccccccCCCeEeeccccccccccccCCCCCcCCccCCHHHHHH
Confidence            999999999999999999999999999999999999999887   99999999998864

>PLN02751 glutamyl-tRNA(Gln) amidotransferase

Probab=100.00  E-value=1.9e-53  Score=379.15  Aligned_cols=135  Identities=37%  Similarity=0.578  Sum_probs=131.8

Q ss_pred             CeEecCCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHHH
Q psy3805           1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEI   80 (139)
Q Consensus         1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE~   80 (139)
                      |||||+|||+||+||++|+++|+++|+|+|+|||+||+|+|||||||||++.|+..+|+||||||||||++|++||+||+
T Consensus       217 IEIVTePdi~speEA~a~l~~L~~ilr~lgisdg~meeGslRcDvNVSvr~~g~~~~GtRvEIKNlNS~~~v~kAI~yEi  296 (544)
T PLN02751        217 LEIVSEPDMRTGIEAAEYGAELQRLVRYLGVSNGNMQEGSLRCDVNVSIRPVGQEEFGTKVEIKNMNSFSAMSRAIDFEI  296 (544)
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHHHHHHhCcccCCcccCccccceeeccccCCCCCCCCeEEEeCCccHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999998888999999999999999999999999


Q ss_pred             HHHHHHHHcC--CeeecccceeEcCCCeeeccccCCCCCCCCCC---Cccccccchhhhh
Q psy3805          81 VRQVALLEQG--GVVVNETRAYDAATKRTVSMRDKENIQVKPRS---HFKTLSLSLTLLN  135 (139)
Q Consensus        81 ~RQ~~~l~~G--~~v~~ETR~~d~~~~~T~~~R~KE~~~DYr~~---~~p~~~l~~~~~~  135 (139)
                      .||+++|+.|  ++|.||||+||+.+++|++||+||.+.||||+   +||-|.++++.++
T Consensus       297 ~RQ~~ll~~G~~~~i~qeTR~wd~~~~~Tv~mR~KE~a~DYRyfPEPDLppi~i~~e~i~  356 (544)
T PLN02751        297 SRQILLHRQGQGDEIVQETRLWDEGAQKTVTMRKKEGLADYRYFPEPDLPEVVLTEEYVD  356 (544)
T ss_pred             HHHHHHHHcCCCCcccccccCcCCCCCeEeecccccchhhcCcCCCCCCCceecCHHHHH
Confidence            9999999999  99999999999999999999999999999987   9999999998775

>KOG2438|consensus

Probab=100.00  E-value=3.8e-50  Score=349.53  Aligned_cols=134  Identities=51%  Similarity=0.748  Sum_probs=129.9

Q ss_pred             CeEecCCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHHH
Q psy3805           1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEI   80 (139)
Q Consensus         1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE~   80 (139)
                      +||||+|||++++||++|+++||.||+++|+|+|+||+|+|||||||||++. +.++|+|||||||||+|+|-+||+|||
T Consensus       174 lEiVt~Pdf~~~~eaa~fv~elqlIlr~lgis~g~meeG~lRvDvNiSI~~~-g~~lG~RvElKNLnsirsI~~AI~yEi  252 (505)
T KOG2438|consen  174 LEIVTKPDFSDGIEAAAFVKELQLILRHLGISSGNMEEGALRVDVNISIAPD-GSELGTRVELKNLNSIRSISNAIDYEI  252 (505)
T ss_pred             EEEecCcccccHHHHHHHHHHHHHHHHHhcccccchhcCceEEeeeeEecCC-CccceeeeeeccchhHHHHHHHHHHHH
Confidence            6999999999999999999999999999999999999999999999999998 559999999999999999999999999


Q ss_pred             HHHHHHHHcCCeeecccceeEcCCCeeeccccCCCCCCCCCC---Cccccccchhhhh
Q psy3805          81 VRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQVKPRS---HFKTLSLSLTLLN  135 (139)
Q Consensus        81 ~RQ~~~l~~G~~v~~ETR~~d~~~~~T~~~R~KE~~~DYr~~---~~p~~~l~~~~~~  135 (139)
                      .||.+++++|+.+..|||+||...|+|++||+||+.+||||+   |+|-+.|.+..++
T Consensus       253 ~RQvel~~nGg~i~nETR~wd~~~~rTvsmRdKEt~~DYRfmPEPnLPpl~L~~~~v~  310 (505)
T KOG2438|consen  253 QRQVELLNNGGAIQNETRGWDSEGGRTVSMRDKETLQDYRFMPEPNLPPLILHGKYVD  310 (505)
T ss_pred             HHHHHHHhcCCccccccccccccCCceEeecccccccceeccCCCCCCCeeecHHHHH
Confidence            999999999999999999999999999999999999999987   9999999988765

>PRK04028 glutamyl-tRNA(Gln) amidotransferase subunit E; Validated

Probab=100.00  E-value=2.6e-39  Score=292.59  Aligned_cols=80  Identities=30%  Similarity=0.530  Sum_probs=77.2

Q ss_pred             CeEecCCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHHH
Q psy3805           1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEI   80 (139)
Q Consensus         1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE~   80 (139)
                      |||||+|||+||+||++|+++|+++|+|+|+|  +|++|+|||||||||+.      |+||||||||||++|++||+||+
T Consensus       186 iEIvtePd~~s~~ea~~~~~~l~~il~~~g~~--~~e~GslR~DvNvSv~~------g~rvEiKnlns~~~v~~ai~yE~  257 (630)
T PRK04028        186 IEISTAPDIHSPEQAKEVALKIGMLLRSTGKV--KRGLGTIRQDVNVSIAG------GARVEIKGVQKLDLIPKVVEYEV  257 (630)
T ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHHHHhCCC--CccCCCeeEEEEEeccC------CceeeecCCCcHHHHHHHHHHHH
Confidence            79999999999999999999999999999987  89999999999999983      89999999999999999999999


Q ss_pred             HHHHHHHH
Q psy3805          81 VRQVALLE   88 (139)
Q Consensus        81 ~RQ~~~l~   88 (139)
                      .||.+++.
T Consensus       258 ~RQ~~llt  265 (630)
T PRK04028        258 QRQLNLLK  265 (630)
T ss_pred             HHHHHHHH
Confidence            99999886

>TIGR00134 gatE_arch glutamyl-tRNA(Gln) amidotransferase, subunit E

Probab=100.00  E-value=3.7e-34  Score=258.78  Aligned_cols=85  Identities=35%  Similarity=0.540  Sum_probs=80.5

Q ss_pred             CeEecCCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHHH
Q psy3805           1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEI   80 (139)
Q Consensus         1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE~   80 (139)
                      |||||+|||+||+||++|+++|+++|+|+|  +++|++|+|||||||||+.      |+||||||||||++|++||+||+
T Consensus       183 iEIvTePdi~sp~ea~~~~~~l~~ilr~~g--~~~~~~GsiR~DvNvSi~~------G~rvEIKnvns~~~i~~ai~~E~  254 (620)
T TIGR00134       183 VEITTDPDISDPQMAKEVAYRIGQILRSTG--KVKRGLGTIRQDLNISIRD------GARVEVKGVQDLDLIPKIVEREV  254 (620)
T ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHHHHhC--CCCcCCCCeeeeEEEeccC------CceeeecCCCcHHHHHHHHHHHH
Confidence            799999999999999999999999999999  5578899999999999985      89999999999999999999999


Q ss_pred             HHHHHHHH-------cCCee
Q psy3805          81 VRQVALLE-------QGGVV   93 (139)
Q Consensus        81 ~RQ~~~l~-------~G~~v   93 (139)
                      .||.++++       .|+.+
T Consensus       255 ~RQ~~ll~~~~~l~~~g~~v  274 (620)
T TIGR00134       255 KRQLNLLKIRDELQERGAVV  274 (620)
T ss_pred             HHHHHHHHhhhhHhhcCCcc
Confidence            99999999       78765

The Archaea have an Asp-tRNA(Asn) amidotransferase instead of an Asp--tRNA ligase, but the genes have not been identified. It is likely that this protein replaces gatB in Asp-tRNA(Asn) amidotransferase but that both enzymes share gatA.

>COG2511 GatE Archaeal Glu-tRNAGln amidotransferase subunit E (contains GAD domain) [Translation, ribosomal structure and biogenesis]

Probab=99.70  E-value=4.7e-17  Score=145.65  Aligned_cols=80  Identities=30%  Similarity=0.542  Sum_probs=74.5

Q ss_pred             CeEecCCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHHH
Q psy3805           1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEI   80 (139)
Q Consensus         1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE~   80 (139)
                      |||-|+||++||++|++.+..|..+|+..|-..-.  -|++|+|+|||++.      |.|||||+++.+..|.+.|+||+
T Consensus       186 IEIsT~PdI~sp~~A~evA~~IG~~lrsTGkvKrg--lgTIRQDvNvSI~~------GarvEIKGVq~LdlI~~vv~yEv  257 (631)
T COG2511         186 IEISTEPDIRSPEQAREVAERIGYILRSTGKVKRG--LGTIRQDVNVSIKG------GARVEIKGVQDLDLIPDVVEYEV  257 (631)
T ss_pred             EEeecCCCCCCHHHHHHHHHHHHHHHHHhcccccc--CcceeeeeeeeecC------CceEEecCcchhhhHHHHHHHHH
Confidence            69999999999999999999999999999855443  69999999999988      79999999999999999999999


Q ss_pred             HHHHHHHH
Q psy3805          81 VRQVALLE   88 (139)
Q Consensus        81 ~RQ~~~l~   88 (139)
                      .||.++|+
T Consensus       258 ~RQ~nLlk  265 (631)
T COG2511         258 ERQLNLLK  265 (631)
T ss_pred             HHHHHHHH
Confidence            99999884

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	139
3h0l_B	478	Structure Of Trna-Dependent Amidotransferase Gatcab		5e-21
3al0_B	482	Crystal Structure Of The Glutamine Transamidosome F		1e-19
3kfu_F	466	Crystal Structure Of The Transamidosome Length = 46		1e-17
2df4_B	483	Structure Of Trna-Dependent Amidotransferase Gatcab		5e-16

>pdb|3H0L|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab From Aquifex Aeolicus Length = 478

Iteration: 1
 Score = 96.3 bits (238), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 49/117 (41%), Positives = 74/117 (63%)
Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           ME+V +PD+   EEA   +++L  I++  G S   M++G LR D NVS++ +   + GTR
Sbjct: 152 MEIVTEPDIRTPEEARLFLEKLRNIMRYAGVSKADMEKGQLRCDINVSIRPKGSKEFGTR 211
Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQ 117
            E+KN+ S R V  A+ +EI RQ+ ++E+GG VV ETR +D  T +T  MR KE  +
Sbjct: 212 VEIKNVNSFRFVQKALEYEIERQINVVEEGGEVVQETRTFDPQTGKTYPMRTKEEAE 268

>pdb|3AL0|B Chain B, Crystal Structure Of The Glutamine Transamidosome From Thermotoga Maritima In The Glutamylation State Length = 482

Iteration: 1
 Score = 91.7 bits (226), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 55/117 (47%), Positives = 75/117 (64%), Gaps = 6/117 (5%)
Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           +E+V +PD+S   EA   +++L  I++ LG ST  M++GALR DAN+SV    DT+ G +
Sbjct: 156 IEIVTEPDISSPREARVFMEKLRSIVRYLGVSTGDMEKGALRCDANISV---VDTETGRQ 212
Query: 61  S---EVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKE 114
           S   EVKN+ S R V  A+ +E  R V  +E+G  V  ETR +D ATK TVSMR KE
Sbjct: 213 SNRVEVKNMNSFRFVERALEYEFERIVKAMERGEDVERETRGWDMATKITVSMRGKE 269

>pdb|3KFU|F Chain F, Crystal Structure Of The Transamidosome Length = 466

Iteration: 1
 Score = 84.7 bits (208), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/114 (40%), Positives = 66/114 (57%), Gaps = 1/114 (0%)
Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           +ELV +PDL   EEA   ++ +  ++Q LG S    +EG LR D NVSV RR    LGT+
Sbjct: 145 IELVTEPDLKTPEEARLFLQRIQALVQTLGISDASPEEGKLRADVNVSV-RRVGEPLGTK 203
Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKE 114
            E+KN+ S + V  A+ +EI RQ  +L +G  V   T  ++  + +T  MR KE
Sbjct: 204 VEIKNLNSFKSVQRALEYEIRRQTEILRRGEKVKQATMGFEEGSGKTYPMRTKE 257

>pdb|2DF4|B Chain B, Structure Of Trna-Dependent Amidotransferase Gatcab Complexed With Mn2+ Length = 483

Iteration: 1
 Score = 79.7 bits (195), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 46/114 (40%), Positives = 71/114 (62%)
Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           +E+V +PD+   +EA A +++L  I+Q  G S  KM+EG+LR DAN+S++     K GT+
Sbjct: 149 IEIVSEPDIRSPKEAYAYLEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQEKFGTK 208
Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKE 114
           +E+KN+ S   V   + +E  RQ   L  GG +  ETR +D +T +T+ MR KE
Sbjct: 209 AELKNLNSFNYVRKGLEYEEKRQEEELLNGGEIGQETRRFDESTGKTILMRVKE 262

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	139
3kfu_F	466	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase;	3e-52
3al0_B	482	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase;	2e-50
3ip4_B	483	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase;	4e-50
3h0l_B	478	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s	7e-50
1zq1_C	633	Glutamyl-tRNA(Gln) amidotransferase subunit E; X-R	3e-27
2d6f_C	619	Glutamyl-tRNA(Gln) amidotransferase subunit E; lig	1e-22
2d6f_C	619	Glutamyl-tRNA(Gln) amidotransferase subunit E; lig	1e-12

>3kfu_F Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus} Length = 466

 Score =  170 bits (433), Expect = 3e-52
 Identities = 46/114 (40%), Positives = 66/114 (57%), Gaps = 1/114 (0%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           +ELV +PDL   EEA   ++ +  ++Q LG S    +EG LR D NVSV RR    LGT+
Sbjct: 145 IELVTEPDLKTPEEARLFLQRIQALVQTLGISDASPEEGKLRADVNVSV-RRVGEPLGTK 203

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKE 114
            E+KN+ S + V  A+ +EI RQ  +L +G  V   T  ++  + +T  MR KE
Sbjct: 204 VEIKNLNSFKSVQRALEYEIRRQTEILRRGEKVKQATMGFEEGSGKTYPMRTKE 257

>3al0_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima} Length = 482

 Score =  166 bits (422), Expect = 2e-50
 Identities = 52/114 (45%), Positives = 71/114 (62%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           +E+V +PD+S   EA   +++L  I++ LG ST  M++GALR DAN+SV      +   R
Sbjct: 156 IEIVTEPDISSPREARVFMEKLRSIVRYLGVSTGDMEKGALRCDANISVVDTETGRQSNR 215

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKE 114
            EVKN+ S R V  A+ +E  R V  +E+G  V  ETR +D ATK TVSMR KE
Sbjct: 216 VEVKNMNSFRFVERALEYEFERIVKAMERGEDVERETRGWDMATKITVSMRGKE 269

>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B Length = 483

 Score =  164 bits (419), Expect = 4e-50
 Identities = 46/114 (40%), Positives = 71/114 (62%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           +E+V +PD+   +EA A +++L  I+Q  G S  KM+EG+LR DAN+S++     K GT+
Sbjct: 149 IEIVSEPDIRSPKEAYAYLEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQEKFGTK 208

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKE 114
           +E+KN+ S   V   + +E  RQ   L  GG +  ETR +D +T +T+ MR KE
Sbjct: 209 AELKNLNSFNYVRKGLEYEEKRQEEELLNGGEIGQETRRFDESTGKTILMRVKE 262

>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B* Length = 478

 Score =  164 bits (418), Expect = 7e-50
 Identities = 49/114 (42%), Positives = 73/114 (64%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           ME+V +PD+   EEA   +++L  I++  G S   M++G LR D NVS++ +   + GTR
Sbjct: 152 MEIVTEPDIRTPEEARLFLEKLRNIMRYAGVSKADMEKGQLRCDINVSIRPKGSKEFGTR 211

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKE 114
            E+KN+ S R V  A+ +EI RQ+ ++E+GG VV ETR +D  T +T  MR KE
Sbjct: 212 VEIKNVNSFRFVQKALEYEIERQINVVEEGGEVVQETRTFDPQTGKTYPMRTKE 265

>1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: a.182.1.2 d.74.4.1 d.128.1.5 Length = 633

 Score =  104 bits (261), Expect = 3e-27
 Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 8/112 (7%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           +E+   PD+   E+A  + K +   L+       K   G +R D NVS+      K G R
Sbjct: 188 IEISTTPDIHHPEQAKVVAKFIGDALRATKK--VKRGLGTIRQDLNVSI------KGGAR 239

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRD 112
            E+K +  +  +   +  E+ RQ+ LL+    +           +    + D
Sbjct: 240 IEIKGVQELDMIPIIIEREVERQLNLLKIRDELRKRGVKPKDIKEEFYDVTD 291

>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: a.182.1.2 d.74.4.1 d.128.1.5 Length = 619

 Score = 91.4 bits (227), Expect = 1e-22
 Identities = 25/125 (20%), Positives = 51/125 (40%), Gaps = 18/125 (14%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           +E+  DP +SD ++   +  ++  IL+       K   G +R D N+S+      + G R
Sbjct: 183 VEITTDPSMSDPQQLREVAYQIGQILRSTR---VKRGLGTIRQDLNISI------RDGAR 233

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATK---------RTVSMR 111
            EVK +  +  +   V  E+ RQ++L+E    +       +              +  + 
Sbjct: 234 VEVKGVQDLDLIPEIVEREVKRQLSLVEIRDTLQERGAVVEDKIFDVSEVFADTESRIIS 293

Query: 112 DKENI 116
             E++
Sbjct: 294 SAESV 298

>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: a.182.1.2 d.74.4.1 d.128.1.5 Length = 619

 Score = 62.9 bits (153), Expect = 1e-12
 Identities = 16/114 (14%), Positives = 29/114 (25%), Gaps = 7/114 (6%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           + +   P    G E A   K+    +  +  +      G    +             G  
Sbjct: 310 IGVEIQPGRRLGTEMADYAKK--RGVSGIFHTDELPAYGITEEEVRGLR-DAVGASQGDA 366

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKE 114
             +     +   A     E++R+  +  QG  V  ETR                
Sbjct: 367 VVMVAHERVT--AENALREVIRRAEMAIQG--VPEETRKALPDGNTQYLRPLPT 416

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	139
3h0l_B	478	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s	100.0
3ip4_B	483	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase;	100.0
3kfu_F	466	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase;	100.0
3al0_B	482	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase;	100.0
1zq1_C	633	Glutamyl-tRNA(Gln) amidotransferase subunit E; X-R	100.0
2d6f_C	619	Glutamyl-tRNA(Gln) amidotransferase subunit E; lig	100.0

>3h0l_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B; multi protein complex, ligase, protein biosynthesis; HET: ADP; 2.30A {Aquifex aeolicus} PDB: 3h0m_B 3h0r_B*

Probab=100.00  E-value=2e-56  Score=392.44  Aligned_cols=136  Identities=37%  Similarity=0.568  Sum_probs=132.7

Q ss_pred             CeEecCCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHHH
Q psy3805           1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEI   80 (139)
Q Consensus         1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE~   80 (139)
                      |||||+|||+||+||++|+++||.+|+|+|+|||+||+|+|||||||||++.|..++|+||||||||||++|++||+||+
T Consensus       152 iEIVTePd~~s~eeA~a~~~~L~~ilr~lgvsd~~meeGslR~DvNVSvr~~g~~~~GtRvEiKNlnS~~~v~~AI~yEi  231 (478)
T 3h0l_B          152 MEIVTEPDIRTPEEARLFLEKLRNIMRYAGVSKADMEKGQLRCDINVSIRPKGSKEFGTRVEIKNVNSFRFVQKALEYEI  231 (478)
T ss_dssp             EEEEECTTBCSHHHHHHHHHHHHHHHHHHTSCCCCGGGTSEEEEEEEEEEETTCCSCCCCEEEECCCSHHHHHHHHHHHH
T ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHHHHhCcCccccccCceEeeeeEEeccCCCCCCcceEEEeccccHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999998889999999999999999999999999


Q ss_pred             HHHHHHHHcCCeeecccceeEcCCCeeeccccCCCCCCCCCC---Cccccccchhhhhh
Q psy3805          81 VRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQVKPRS---HFKTLSLSLTLLNL  136 (139)
Q Consensus        81 ~RQ~~~l~~G~~v~~ETR~~d~~~~~T~~~R~KE~~~DYr~~---~~p~~~l~~~~~~~  136 (139)
                      .||+++|+.|+.|.||||+||+.+|+|.+||+||++.|||||   +||-+.++++.++-
T Consensus       232 ~RQ~~~le~Gg~V~qETR~~d~~~g~T~~mR~KE~a~DYRyfPePDLppv~i~~e~i~~  290 (478)
T 3h0l_B          232 ERQINVVEEGGEVVQETRTFDPQTGKTYPMRTKEEAEDYRYFPDPDLVPLKVKKEWIEE  290 (478)
T ss_dssp             HHHHHHHHTTCCCCCCEEEEETTTTEEECCSCCCCCCCCCCEECTTSCCEECCHHHHHH
T ss_pred             HHHHHHHHcCCCeecccccccCCCCeEEeccccCccccCCCCCCCCCCCeecCHHHHHH
Confidence            999999999999999999999999999999999999999988   99999999988764

>3ip4_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} PDB: 2df4_B 2dqn_B* 2g5h_B 2g5i_B* 2f2a_B

Probab=100.00  E-value=3.9e-56  Score=390.99  Aligned_cols=136  Identities=35%  Similarity=0.463  Sum_probs=132.6

Q ss_pred             CeEecCCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHHH
Q psy3805           1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEI   80 (139)
Q Consensus         1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE~   80 (139)
                      |||||+|||+||+||++|+++|+++|+|+|+|||+||+|+|||||||||++.|+.++|+||||||||||++|++||+||+
T Consensus       149 iEIVTePd~~s~eeA~a~~~~L~~ilr~lgvsd~~meeGslR~DvNVSvr~~g~~~~GtRvEiKNlnS~~~v~~AI~yEi  228 (483)
T 3ip4_B          149 IEIVSEPDIRSPKEAYAYLEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKGLEYEE  228 (483)
T ss_dssp             EEEEECSCBCSHHHHHHHHHHHHHHHHHHTSCCCCGGGTSEEEEEEEEEEETTSCCCCCEEEEECCCSHHHHHHHHHHHH
T ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcccCceEeeeeEeecCCCCCCCcceEEEecccCHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999998889999999999999999999999999


Q ss_pred             HHHHHHHHcCCeeecccceeEcCCCeeeccccCCCCCCCCCC---Cccccccchhhhhh
Q psy3805          81 VRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQVKPRS---HFKTLSLSLTLLNL  136 (139)
Q Consensus        81 ~RQ~~~l~~G~~v~~ETR~~d~~~~~T~~~R~KE~~~DYr~~---~~p~~~l~~~~~~~  136 (139)
                      .||+++|+.|+.|.||||+||+.+|+|.+||+||++.||||+   +||-+.++++.++-
T Consensus       229 ~RQ~~~le~Gg~v~qETR~~d~~~g~T~~mR~KE~a~DYRyfPePDLpPv~i~~e~ie~  287 (483)
T 3ip4_B          229 KRQEEELLNGGEIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDDAWKER  287 (483)
T ss_dssp             HHHHHHHHHTCCCCEEEEEECTTTSCEEEEEEECSCCCCCCEECTTSCCEECCHHHHHH
T ss_pred             HHHHHHHHcCCcEeccceeecCCCCEEEecccccccccCCCCCCCCCCceecCHHHHHH
Confidence            999999999999999999999999999999999999999988   99999999988764

>3kfu_F Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; ASPRS, gatcab, ATP-binding, aminoacyl-tRNA synthetase, ligas nucleotide-binding, protein biosynthesis, ligase-RNA comple; HET: H2U 5MU PSU; 3.00A {Thermus thermophilus}

Probab=100.00  E-value=5.8e-56  Score=387.94  Aligned_cols=135  Identities=34%  Similarity=0.512  Sum_probs=125.5

Q ss_pred             CeEecCCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHHH
Q psy3805           1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEI   80 (139)
Q Consensus         1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE~   80 (139)
                      |||||+|||+||+||++|+++|+++|+|+|+|||+||+|+|||||||||++.|+ ++|+||||||||||++|++||+||+
T Consensus       145 iEIVTePDirspeEA~ayl~~Lr~ilrylgvsdg~meeGslR~DvNVSvr~~g~-~~GtRvEIKNlNSfr~V~kAI~yEi  223 (466)
T 3kfu_F          145 IELVTEPDLKTPEEARLFLQRIQALVQTLGISDASPEEGKLRADVNVSVRRVGE-PLGTKVEIKNLNSFKSVQRALEYEI  223 (466)
T ss_dssp             EEEEECTTBCCHHHHHHHHHHHHHHHHHHTSBCCCGGGTCEEEEEEEEECCSSS-SCCCCEEEEEECCHHHHHHHHHHHH
T ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHHHHhCcccCccccCcEEEeeeEEecCCCC-CCCceEEEecccCHHHHHHHHHHHH
Confidence            699999999999999999999999999999999999999999999999999977 9999999999999999999999999


Q ss_pred             HHHHHHHHcCCeeecccceeEcCCCeeeccccCCCCCCCCCC---Cccccccchhhhhh
Q psy3805          81 VRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQVKPRS---HFKTLSLSLTLLNL  136 (139)
Q Consensus        81 ~RQ~~~l~~G~~v~~ETR~~d~~~~~T~~~R~KE~~~DYr~~---~~p~~~l~~~~~~~  136 (139)
                      .||+++|+.|+.|.||||+||+.+|+|.+||+||++.||||+   +||-+.++++.++-
T Consensus       224 ~RQ~~lLe~Gg~V~qETR~wd~~~g~T~~mR~KE~a~DYRYfPEPDLpPv~i~~e~ie~  282 (466)
T 3kfu_F          224 RRQTEILRRGEKVKQATMGFEEGSGKTYPMRTKEEEADYRYFPEPDLPPVAIPRDWLEE  282 (466)
T ss_dssp             HHHHHHHTSSCCCCCCEECEETTTTEECCC------CCCCCEECTTSCCEECCHHHHHH
T ss_pred             HHHHHHHHcCCCeeCccCcccCCCCEEEeCcccCccccCCcCCCCCCCcEecCHHHHHH
Confidence            999999999999999999999999999999999999999988   99999999988764

>3al0_B Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; protein-RNA complex, ligase-RNA complex; HET: GSU; 3.37A {Thermotoga maritima}

Probab=100.00  E-value=4.6e-56  Score=390.45  Aligned_cols=137  Identities=40%  Similarity=0.502  Sum_probs=133.0

Q ss_pred             CeEecCCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHHH
Q psy3805           1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEI   80 (139)
Q Consensus         1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE~   80 (139)
                      |||||+|||+||+||++|+++|+++|+|+|+|||+||+|+|||||||||++.|+.++|+||||||||||++|++||+||+
T Consensus       156 iEIVTePd~~s~eeA~~~~~~L~~il~~lgvsd~~meeGslR~DvNVSvr~~g~~~~gtR~EiKNlnS~~~v~~Ai~yE~  235 (482)
T 3al0_B          156 IEIVTEPDISSPREARVFMEKLRSIVRYLGVSTGDMEKGALRCDANISVVDTETGRQSNRVEVKNMNSFRFVERALEYEF  235 (482)
T ss_dssp             EEEEECTTCCSHHHHHHHHHHHHHHHHHHTSCCCCGGGTSEEEEEECCCCSSSCSSCCCCCCCCCCCSSHHHHHHHHHHH
T ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHHHHhCCCCCccccCceeccceeeecCCCCCCCCceEEEechhhHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999998889999999999999999999999999


Q ss_pred             HHHHHHHHcCCeeecccceeEcCCCeeeccccCCCCCCCCCC---Cccccccchhhhhhh
Q psy3805          81 VRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQVKPRS---HFKTLSLSLTLLNLL  137 (139)
Q Consensus        81 ~RQ~~~l~~G~~v~~ETR~~d~~~~~T~~~R~KE~~~DYr~~---~~p~~~l~~~~~~~~  137 (139)
                      .||+++|+.|+.|.||||+||+.+|+|++||+||++.||||+   +||-+.++++.++-+
T Consensus       236 ~RQ~~~l~~G~~v~qETR~~d~~~g~T~~mR~Ke~a~DYRyfPepDLpp~~i~~~~ie~i  295 (482)
T 3al0_B          236 ERIVKAMERGEDVERETRGWDMATKITVSMRGKEEESDYRYFPEPDIPPVVLSDEYLEEV  295 (482)
T ss_dssp             HTTSSSSSSSCCCCCCCCEEETTTTEEECCSSCCCSCCCCCEECTTSCCEECCHHHHTTS
T ss_pred             HHHHHHHHcCCCeEeEEccccCCCCeEeecccCCCccccCCCCCCCCCcEEcCHHHHHHH
Confidence            999999999999999999999999999999999999999987   999999999887643

>1zq1_C Glutamyl-tRNA(Gln) amidotransferase subunit E; X-RAY, 3D structure, asparaginase 1 family, GATD subfamily, lyase; 3.00A {Pyrococcus abyssi} SCOP: a.182.1.2 d.74.4.1 d.128.1.5

Probab=100.00  E-value=4.9e-41  Score=302.56  Aligned_cols=79  Identities=28%  Similarity=0.402  Sum_probs=76.0

Q ss_pred             CeEecCCCCCCHHHHHHHHHHHHHHHHHhC-ccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHH
Q psy3805           1 MELVFDPDLSDGEEAAALVKELILILQCLG-TSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFE   79 (139)
Q Consensus         1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lg-vs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE   79 (139)
                      |||||+|||+||+||++|+++|+++|+|+| +|+|   +|+|||||||||+.      |+||||||||||++|++||+||
T Consensus       188 iEIvTePdi~speeA~~~~~~l~~ilr~~g~v~~g---~GslR~DvNVSi~~------G~RvEIKnvnS~~~i~~ai~~E  258 (633)
T 1zq1_C          188 IEISTTPDIHHPEQAKVVAKFIGDALRATKKVKRG---LGTIRQDLNVSIKG------GARIEIKGVQELDMIPIIIERE  258 (633)
T ss_dssp             EEEECCTTBCSHHHHHHHHHHHHHHHHHTSCBCCS---STTEEEEEEECCTT------SCCEEEECCCSGGGHHHHHHHH
T ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHHHHhCCcccC---CCccccccccccCC------CceeEeeCCccHHHHHHHHHHH
Confidence            699999999999999999999999999999 7776   89999999999984      8999999999999999999999


Q ss_pred             HHHHHHHHH
Q psy3805          80 IVRQVALLE   88 (139)
Q Consensus        80 ~~RQ~~~l~   88 (139)
                      +.||+++|+
T Consensus       259 ~~RQ~~ll~  267 (633)
T 1zq1_C          259 VERQLNLLK  267 (633)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999999996

>2d6f_C Glutamyl-tRNA(Gln) amidotransferase subunit E; ligase, ligase/RNA complex; 3.15A {Methanothermobacterthermautotrophicus} SCOP: a.182.1.2 d.74.4.1 d.128.1.5

Probab=100.00  E-value=4.3e-41  Score=302.35  Aligned_cols=79  Identities=29%  Similarity=0.467  Sum_probs=76.8

Q ss_pred             CeEecCCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHHH
Q psy3805           1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEI   80 (139)
Q Consensus         1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE~   80 (139)
                      |||||+|||+||+||++|+++|+++|+|+|+|+|   +|+|||||||||+.      |+||||||||||++|++||+||+
T Consensus       183 iEIvTePd~~speeA~~~~~~l~~ilr~~~v~~g---~GslR~DvNVSi~~------G~RvEIKnvns~~~i~~ai~~E~  253 (619)
T 2d6f_C          183 VEITTDPSMSDPQQLREVAYQIGQILRSTRVKRG---LGTIRQDLNISIRD------GARVEVKGVQDLDLIPEIVEREV  253 (619)
T ss_dssp             EEEECCSCCCCHHHHHHHHHHHHHHHTTSSCCCS---STTCEEEEEEECTT------SCCEEEECCCCGGGHHHHHHHHH
T ss_pred             EEEecCCCCCCHHHHHHHHHHHHHHHHHhCCccC---CCccccccccccCC------CceeEeeCCccHHHHHHHHHHHH
Confidence            6999999999999999999999999999999988   89999999999984      89999999999999999999999


Q ss_pred             HHHHHHHH
Q psy3805          81 VRQVALLE   88 (139)
Q Consensus        81 ~RQ~~~l~   88 (139)
                      .||+++|+
T Consensus       254 ~RQ~~ll~  261 (619)
T 2d6f_C          254 KRQLSLVE  261 (619)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99999999

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	139
d2f2ab2	290	d.128.1.5 (B:4-293) Aspartyl/glutamyl-tRNA(Asn/Gln	1e-30
d2d6fc3	319	d.128.1.5 (C:1-270,C:396-444) Glutamyl-tRNA(Gln) a	3e-19
d1zq1c3	321	d.128.1.5 (C:5-276,C:408-456) Glutamyl-tRNA(Gln) a	8e-18

>d2f2ab2 d.128.1.5 (B:4-293) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, N-terminal domain {Staphylococcus aureus [TaxId: 1280]} Length = 290

class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: GatB/GatE catalytic domain-like
domain: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, N-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

 Score =  109 bits (273), Expect = 1e-30
 Identities = 46/115 (40%), Positives = 71/115 (61%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           +E+V +PD+   +EA A +++L  I+Q  G S  KM+EG+LR DAN+S++     K GT+
Sbjct: 146 IEIVSEPDIRSPKEAYAYLEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQEKFGTK 205

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVVVNETRAYDAATKRTVSMRDKEN 115
           +E+KN+ S   V   + +E  RQ   L  GG +  ETR +D +T +T+ MR KE 
Sbjct: 206 AELKNLNSFNYVRKGLEYEEKRQEEELLNGGEIGQETRRFDESTGKTILMRVKEG 260

>d2d6fc3 d.128.1.5 (C:1-270,C:396-444) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE {Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 319

class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: GatB/GatE catalytic domain-like
domain: Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 79.4 bits (195), Expect = 3e-19
 Identities = 29/119 (24%), Positives = 52/119 (43%), Gaps = 14/119 (11%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           +E+  DP +SD ++   +  ++    Q L ++  K   G +R D N+S++       G R
Sbjct: 183 VEITTDPSMSDPQQLREVAYQIG---QILRSTRVKRGLGTIRQDLNISIRD------GAR 233

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVV----VNETRAYDAATKRTVSMRDKEN 115
            EVK +  +  +   V  E+ RQ++L+E    +      ETR        T  +R    
Sbjct: 234 VEVKGVQDLDLIPEIVEREVKRQLSLVEIRDTLQERGPEETRKAL-PDGNTQYLRPLPT 291

>d1zq1c3 d.128.1.5 (C:5-276,C:408-456) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE {Pyrococcus abyssi [TaxId: 29292]} Length = 321

class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: GatB/GatE catalytic domain-like
domain: Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE
species: Pyrococcus abyssi [TaxId: 29292]

 Score = 75.6 bits (185), Expect = 8e-18
 Identities = 28/119 (23%), Positives = 46/119 (38%), Gaps = 13/119 (10%)

Query: 1   MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTR 60
           +E+   PD+   E+A  + K +        T   K   G +R D NVS++         R
Sbjct: 184 IEISTTPDIHHPEQAKVVAKFIGD--ALRATKKVKRGLGTIRQDLNVSIKGGA------R 235

Query: 61  SEVKNIGSIRGVANAVNFEIVRQVALLEQGGVV----VNETRAYDAATKRTVSMRDKEN 115
            E+K +  +  +   +  E+ RQ+ LL+    +      ETR        T  MR    
Sbjct: 236 IEIKGVQELDMIPIIIEREVERQLNLLKIRDELRKRGPEETRRAL-PDGNTEYMRPLPG 293

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	139
d2f2ab2	290	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase s	100.0
d2d6fc3	319	Glutamyl-tRNA(Gln) amidotransferase subunit E, Gat	100.0
d1zq1c3	321	Glutamyl-tRNA(Gln) amidotransferase subunit E, Gat	100.0
d1tola2	92	TolA {Escherichia coli [TaxId: 562]}	82.0

>d2f2ab2 d.128.1.5 (B:4-293) Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, N-terminal domain {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: GatB/GatE catalytic domain-like
domain: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, GatB, N-terminal domain
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=2e-57  Score=376.05  Aligned_cols=137  Identities=34%  Similarity=0.464  Sum_probs=133.3

Q ss_pred             CeEecCCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHHH
Q psy3805           1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEI   80 (139)
Q Consensus         1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE~   80 (139)
                      |||||+|||+||+||++|+++|++||+|+|+|+|+|++|+|||||||||++.|+..+|+||||||||||++|++||+||+
T Consensus       146 iEIVTePd~~s~~eA~~~~~~L~~il~~lgvsd~~me~GslR~DvNVSi~~~g~~~~G~RvEIKNlnS~~~i~~aI~~Ei  225 (290)
T d2f2ab2         146 IEIVSEPDIRSPKEAYAYLEKLRSIIQYTGVSDVKMEEGSLRCDANISLRPYGQEKFGTKAELKNLNSFNYVRKGLEYEE  225 (290)
T ss_dssp             EEEEECTTBCSHHHHHHHHHHHHHHHHHHTSCCCCGGGTSEEEEEEEECCCSSSCCCCCCCEEECCCCSTTTHHHHHHHH
T ss_pred             eeeeccCCcCCHHHHHHHHHHHHHHhhhcCcccccccccccccccceeecCCCcccccceEEeecchHHHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999998888999999999999999999999999


Q ss_pred             HHHHHHHHcCCeeecccceeEcCCCeeeccccCCCCCCCCCC---Cccccccchhhhhhh
Q psy3805          81 VRQVALLEQGGVVVNETRAYDAATKRTVSMRDKENIQVKPRS---HFKTLSLSLTLLNLL  137 (139)
Q Consensus        81 ~RQ~~~l~~G~~v~~ETR~~d~~~~~T~~~R~KE~~~DYr~~---~~p~~~l~~~~~~~~  137 (139)
                      .||+++|+.|++|.||||+||+.+++|++||+||.+.||||+   +||-|.++++.++-+
T Consensus       226 ~RQ~~~l~~g~~i~qeTR~~d~~~~~T~~mRsKE~a~DYRYfPEPDLppi~i~~~~i~~i  285 (290)
T d2f2ab2         226 KRQEEELLNGGEIGQETRRFDESTGKTILMRVKEGSDDYRYFPEPDIVPLYIDDAWKERV  285 (290)
T ss_dssp             HHHHHHTTTTTCCCCCEEEEETTTTEEEEEECCCSCCCCCCEECTTSCCEECCHHHHHHH
T ss_pred             HHHHHHHhcCCcceeecccCccCCCEEeeCCCCCCccCcCCCCCCCCCceecCHHHHHHH
Confidence            999999999999999999999999999999999999999987   999999999988654

>d2d6fc3 d.128.1.5 (C:1-270,C:396-444) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: GatB/GatE catalytic domain-like
domain: Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=100.00  E-value=7.5e-48  Score=322.23  Aligned_cols=125  Identities=24%  Similarity=0.317  Sum_probs=117.5

Q ss_pred             CeEecCCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHHH
Q psy3805           1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEI   80 (139)
Q Consensus         1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE~   80 (139)
                      |||||+|||+||+||++|+++|+++|+++|+|+|   +|+|||||||||++      |+||||||||||++|++||+||+
T Consensus       183 iEIVTePd~~s~~ea~~~~~~l~~il~~lgv~~~---~Gs~R~DvNVSvr~------GtRvEIKNlNSfr~i~~AI~yEi  253 (319)
T d2d6fc3         183 VEITTDPSMSDPQQLREVAYQIGQILRSTRVKRG---LGTIRQDLNISIRD------GARVEVKGVQDLDLIPEIVEREV  253 (319)
T ss_dssp             EEEECCSCCCCHHHHHHHHHHHHHHHTTSSCCCS---STTCEEEEEEECTT------SCCEEEECCCCGGGHHHHHHHHH
T ss_pred             EEEEeecccCCHHHHHHHHHHHHHHhhhhhcccc---cccccccccccccc------cceEeecccchhHHHHHHHHHHH
Confidence            6999999999999999999999999999999987   59999999999987      78999999999999999999999


Q ss_pred             HHHHHHHHcCCeee----cccceeEcCCCeeeccccCCCCCCCCCC---Cccccccchhhhhhh
Q psy3805          81 VRQVALLEQGGVVV----NETRAYDAATKRTVSMRDKENIQVKPRS---HFKTLSLSLTLLNLL  137 (139)
Q Consensus        81 ~RQ~~~l~~G~~v~----~ETR~~d~~~~~T~~~R~KE~~~DYr~~---~~p~~~l~~~~~~~~  137 (139)
                      .||+++++.|+.+.    ||||+||+. +.|..||+||+  |||||   +||-|.++++.++.+
T Consensus       254 ~RQ~~lle~g~~i~~~~~qetr~~~~~-~~t~~~R~ke~--dyRYfPEPDLppi~i~~~~Ie~i  314 (319)
T d2d6fc3         254 KRQLSLVEIRDTLQERGPEETRKALPD-GNTQYLRPLPT--SSRMYLETDIPLFRIEDDLLEGI  314 (319)
T ss_dssp             HHHHHHHHHHHHHHHTTCCEEEEECSS-SCEEEEEECCC--CCCEEECTTSCCEECCHHHHHHH
T ss_pred             HHHHHHHHcCCccccCCccccccCCCC-CCEEeeccccc--ccccCCCCCCCCEeCCHHHHHHH
Confidence            99999999998885    899999986 78999999985  89876   999999999998764

>d1zq1c3 d.128.1.5 (C:5-276,C:408-456) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a+b)
fold: Glutamine synthetase/guanido kinase
superfamily: Glutamine synthetase/guanido kinase
family: GatB/GatE catalytic domain-like
domain: Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE
species: Pyrococcus abyssi [TaxId: 29292]

Probab=100.00  E-value=1.5e-47  Score=320.55  Aligned_cols=126  Identities=24%  Similarity=0.259  Sum_probs=115.9

Q ss_pred             CeEecCCCCCCHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHHH
Q psy3805           1 MELVFDPDLSDGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEI   80 (139)
Q Consensus         1 iEIVTePd~~s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE~   80 (139)
                      |||||+|||+||+||++|+++|+.+|+++|+|+  |++|+|||||||||+.      |+||||||||||++|++||+||+
T Consensus       184 iEIVTePd~~s~~eA~~~~~~L~~il~~~~~~~--~~~GslR~DvNVSv~~------g~RvEIKNlnS~r~i~~AI~~Ei  255 (321)
T d1zq1c3         184 IEISTTPDIHHPEQAKVVAKFIGDALRATKKVK--RGLGTIRQDLNVSIKG------GARIEIKGVQELDMIPIIIEREV  255 (321)
T ss_dssp             EEEECCTTBCSHHHHHHHHHHHHHHHHHTSCBC--CSSTTEEEEEEECCTT------SCCEEEECCCSGGGHHHHHHHHH
T ss_pred             EEEecccccccHHHHHHHHHHHHHHhhhhhhcc--cccceeeccccccccc------cceeeeeccchhHHHHHHHHHHH
Confidence            699999999999999999999999999988665  6789999999999976      79999999999999999999999


Q ss_pred             HHHHHHHHcCCee----ecccceeEcCCCeeeccccCCCCCCCCCC---Cccccccchhhhhhh
Q psy3805          81 VRQVALLEQGGVV----VNETRAYDAATKRTVSMRDKENIQVKPRS---HFKTLSLSLTLLNLL  137 (139)
Q Consensus        81 ~RQ~~~l~~G~~v----~~ETR~~d~~~~~T~~~R~KE~~~DYr~~---~~p~~~l~~~~~~~~  137 (139)
                      +||+++|+.|+++    .||||+||+. +.|..||+||  .|||||   +||-|.++++.++-+
T Consensus       256 ~RQ~~~l~~g~~~~~~~~qeTr~~~~~-~~T~~~R~ke--~dyRYfPePDLppi~i~~~~i~~i  316 (321)
T d1zq1c3         256 ERQLNLLKIRDELRKRGPEETRRALPD-GNTEYMRPLP--GKARMYPETDIPPLRIPDDLKKKI  316 (321)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCEEEECTT-SCEEEEECCC--CCCCEEECTTSCCEECCHHHHHHH
T ss_pred             HHHHHHHHcCCccccccccceeeECCC-CCEEeeecCC--CccccCCCCCCCCEEcCHHHHHHH
Confidence            9999999998766    4899999985 6899999998  499887   999999999988754

>d1tola2 d.212.1.1 (A:125-216) TolA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: TolA/TonB C-terminal domain
superfamily: TolA/TonB C-terminal domain
family: TolA
domain: TolA
species: Escherichia coli [TaxId: 562]

Probab=82.00  E-value=1.3  Score=28.37  Aligned_cols=63  Identities=10%  Similarity=0.106  Sum_probs=45.8

Q ss_pred             CHHHHHHHHHHHHHHHHHhCccccccCCCceeeccceecccCCCCCCcCeeEecCCCChHHHHHHHHHHH
Q psy3805          11 DGEEAAALVKELILILQCLGTSTCKMQEGALRVDANVSVQRRTDTKLGTRSEVKNIGSIRGVANAVNFEI   80 (139)
Q Consensus        11 s~eEA~~~~~~L~~iL~~lgvs~g~me~G~lR~DvNVSv~~~~~~~~g~RvEIKNlNS~~~I~~AI~yE~   80 (139)
                      |+.|+..|...|+..++..=.-...+ .| +.|+|.|.+.+.     |.-+.++-.++-....+|+..=+
T Consensus         1 s~~ev~~Y~~~I~~~I~~~w~~p~~~-~g-~~~~v~i~l~~~-----G~v~~v~~sSG~~~fd~sa~~Ai   63 (92)
T d1tola2           1 SGADINNYAGQIKSAIESKFYDASSY-AG-KTCTLRIKLAPD-----GMLLDIKPEGGDPALCQAALAAA   63 (92)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCTTGGGG-TT-CCEEEEEEECTT-----SCEEEEEEEEECHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhcCCCccc-CC-CEEEEEEEEeCC-----ccEEEeEecCCCHHHHHHHHHHH
Confidence            56789999999999999876666666 45 689999999987     33345555566666666664433