Psyllid ID: psy3838

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70----
Protein Sequence
MSFHKCHMCSVTSVIGYQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVRVVFINDFKSIEH
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccccEccccEEEEEEEEEEEcccccccc
Coil and Loop (DISEMBL)
msfhkchmcsvtsvigyqkkigaydkQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVRVVFIndfksieh
Flexible Loop (DISEMBL)
msfhkchmcsvtsvigyqkkiGAYDKQQWETTVEQRilngfthvpkktaklktelidvdlvrVVFIndfksieh
Low Complexity Region (SEG)
MSFHKCHMCSVTSVIGYQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVRVVFINDFKSIEH
Disordered region (IsUnstruct)
***HKCHMCSVTSVIGYQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVRVVFINDF*****
Disordered Region (DISOPRED)
********CSVTSVIGYQKKIGAYDKQQWETTVE**************AKLKTELIDVDLVRVVFI********
Disordered Region (DISEMBL)
MSFHKCHMCSVTSVIGYQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVRVVFINDFKSIEH
Disordered Region (DISPRO)
*SFHKCHMCSVTSVIGYQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVRVVFINDFK****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSFHKCHMCSVTSVIGYQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVRVVFINDFKSIEH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	74	2.2.26 [Sep-21-2011]
Q9V9A8	880	Putative homeodomain tran	yes	N/A	0.621	0.052	0.760	3e-14
Q8CB19	747	Putative homeodomain tran	yes	N/A	0.675	0.066	0.62	6e-12
Q5ZKN3	752	Putative homeodomain tran	yes	N/A	0.621	0.061	0.652	1e-10
Q08DA4	762	Putative homeodomain tran	yes	N/A	0.621	0.060	0.586	3e-10
Q9QZ09	761	Putative homeodomain tran	no	N/A	0.621	0.060	0.586	4e-10
Q9UMS5	762	Putative homeodomain tran	no	N/A	0.621	0.060	0.565	2e-09
Q8N3S3	785	Putative homeodomain tran	yes	N/A	0.567	0.053	0.608	6e-07

>sp|Q9V9A8|PHTF_DROME Putative homeodomain transcription factor OS=Drosophila melanogaster GN=phtf PE=1 SV=2

 Score = 77.4 bits (189), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 35/46 (76%), Positives = 38/46 (82%)

Query: 17 YQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVR 62
          YQK+IG YDKQ+WE TVEQRIL+GF  V  K  KLKTELIDVDLVR
Sbjct: 10 YQKRIGTYDKQEWEKTVEQRILDGFNSVNLKNTKLKTELIDVDLVR 55

May play a role in transcription regulation.
Drosophila melanogaster (taxid: 7227)

>sp|Q8CB19|PHTF2_MOUSE Putative homeodomain transcription factor 2 OS=Mus musculus GN=Phtf2 PE=2 SV=2

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 31/50 (62%), Positives = 40/50 (80%)

Query: 13 SVIGYQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVR 62
          +++ YQKKIGAYD+Q WE +VEQR + G  + PKKTA +K +LIDVDLVR
Sbjct: 8  AIVWYQKKIGAYDQQIWEKSVEQREIKGLRNKPKKTAHVKPDLIDVDLVR 57

May play a role in transcription regulation.

Mus musculus (taxid: 10090)

>sp|Q5ZKN3|PHTF2_CHICK Putative homeodomain transcription factor 2 OS=Gallus gallus GN=PHTF2 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/46 (65%), Positives = 36/46 (78%)

Query: 17 YQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVR 62
          YQKKIGAYD+Q WE +VEQR + G  + PKKT  +K +LIDVDLVR
Sbjct: 12 YQKKIGAYDQQIWEKSVEQREIKGLRNKPKKTGHVKPDLIDVDLVR 57

May play a role in transcription regulation.

Gallus gallus (taxid: 9031)

>sp|Q08DA4|PHTF1_BOVIN Putative homeodomain transcription factor 1 OS=Bos taurus GN=PHTF1 PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 35/46 (76%)

Query: 17 YQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVR 62
          YQKKIGAYD+Q WE ++EQ  + GF + PKK   +K +LIDVDL+R
Sbjct: 12 YQKKIGAYDQQIWEKSIEQTQIKGFKNKPKKMGHIKADLIDVDLIR 57

May play a role in transcription regulation.

Bos taurus (taxid: 9913)

>sp|Q9QZ09|PHTF1_MOUSE Putative homeodomain transcription factor 1 OS=Mus musculus GN=Phtf1 PE=1 SV=2

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/46 (58%), Positives = 35/46 (76%)

Query: 17 YQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVR 62
          YQKKIGAYD+Q WE ++EQ  + GF + PKK   +K +LIDVDL+R
Sbjct: 12 YQKKIGAYDQQIWEKSIEQTQIKGFKNKPKKMGHIKPDLIDVDLIR 57

May play a role in transcription regulation.

Mus musculus (taxid: 10090)

>sp|Q9UMS5|PHTF1_HUMAN Putative homeodomain transcription factor 1 OS=Homo sapiens GN=PHTF1 PE=2 SV=2

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/46 (56%), Positives = 34/46 (73%)

Query: 17 YQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVR 62
          YQKKIGAYD+Q WE ++EQ  + G  + PKK   +K +LIDVDL+R
Sbjct: 12 YQKKIGAYDQQIWEKSIEQTQIKGLKNKPKKMGHIKPDLIDVDLIR 57

May play a role in transcription regulation.

Homo sapiens (taxid: 9606)

>sp|Q8N3S3|PHTF2_HUMAN Putative homeodomain transcription factor 2 OS=Homo sapiens GN=PHTF2 PE=2 SV=2

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 28/46 (60%), Positives = 33/46 (71%), Gaps = 4/46 (8%)

Query: 21 IGAYDKQQWETTVEQR----ILNGFTHVPKKTAKLKTELIDVDLVR 62
          IGAYD+Q WE +VEQR    I  G  + PKKTA +K +LIDVDLVR
Sbjct: 50 IGAYDQQIWEKSVEQREIKFIKLGLRNKPKKTAHVKPDLIDVDLVR 95

May play a role in transcription regulation.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
328707563	877	PREDICTED: putative homeodomain transcri	0.729	0.061	0.763	1e-16
380015109	805	PREDICTED: putative homeodomain transcri	0.662	0.060	0.836	1e-15
328778712	774	PREDICTED: putative homeodomain transcri	0.662	0.063	0.836	1e-15
340717121	804	PREDICTED: putative homeodomain transcri	0.621	0.057	0.869	3e-15
350416412	773	PREDICTED: putative homeodomain transcri	0.621	0.059	0.869	3e-15
242007184	867	conserved hypothetical protein [Pediculu	0.621	0.053	0.869	4e-15
383864051	807	PREDICTED: putative homeodomain transcri	0.621	0.057	0.847	7e-15
307193677	803	Putative homeodomain transcription facto	0.621	0.057	0.804	1e-14
307188201	807	Putative homeodomain transcription facto	0.621	0.057	0.804	2e-14
332022697	805	Putative homeodomain transcription facto	0.621	0.057	0.804	4e-14

>gi|328707563|ref|XP_003243431.1| PREDICTED: putative homeodomain transcription factor-like isoform 1 [Acyrthosiphon pisum] gi|328707565|ref|XP_003243432.1| PREDICTED: putative homeodomain transcription factor-like isoform 2 [Acyrthosiphon pisum]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 42/55 (76%), Positives = 48/55 (87%), Gaps = 1/55 (1%)

Query: 9  CSVTSVIG-YQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVR 62
          C+V  ++  YQKKIG YDKQQWE T+EQRIL+GFTHVPKK AKLKT+LIDVDLVR
Sbjct: 3  CNVQKIVTWYQKKIGTYDKQQWEKTIEQRILSGFTHVPKKNAKLKTDLIDVDLVR 57

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380015109|ref|XP_003691552.1| PREDICTED: putative homeodomain transcription factor-like [Apis florea]

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/49 (83%), Positives = 42/49 (85%)

Query: 14 VIGYQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVR 62
          V  YQKKIG YDKQQWE TVEQ IL GFTHVP +TAKLKTELIDVDLVR
Sbjct: 7  VYWYQKKIGTYDKQQWEKTVEQHILGGFTHVPMRTAKLKTELIDVDLVR 55

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328778712|ref|XP_624274.3| PREDICTED: putative homeodomain transcription factor-like [Apis mellifera]

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/49 (83%), Positives = 42/49 (85%)

Query: 14 VIGYQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVR 62
          V  YQKKIG YDKQQWE TVEQ IL GFTHVP +TAKLKTELIDVDLVR
Sbjct: 7  VYWYQKKIGTYDKQQWEKTVEQHILGGFTHVPMRTAKLKTELIDVDLVR 55

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717121|ref|XP_003397036.1| PREDICTED: putative homeodomain transcription factor-like [Bombus terrestris]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/46 (86%), Positives = 41/46 (89%)

Query: 17 YQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVR 62
          YQKKIG YDKQQWE TVEQ IL GFTHVP +TAKLKTELIDVDLVR
Sbjct: 10 YQKKIGTYDKQQWEKTVEQHILEGFTHVPMRTAKLKTELIDVDLVR 55

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350416412|ref|XP_003490940.1| PREDICTED: putative homeodomain transcription factor-like [Bombus impatiens]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 40/46 (86%), Positives = 41/46 (89%)

Query: 17 YQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVR 62
          YQKKIG YDKQQWE TVEQ IL GFTHVP +TAKLKTELIDVDLVR
Sbjct: 10 YQKKIGTYDKQQWEKTVEQHILEGFTHVPMRTAKLKTELIDVDLVR 55

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242007184|ref|XP_002424422.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212507822|gb|EEB11684.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score = 85.5 bits (210), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/46 (86%), Positives = 42/46 (91%)

Query: 17 YQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVR 62
          YQKKIG YDKQQWE TVEQRIL+G THV KKTAKLKT+LIDVDLVR
Sbjct: 10 YQKKIGTYDKQQWEKTVEQRILHGLTHVLKKTAKLKTDLIDVDLVR 55

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864051|ref|XP_003707493.1| PREDICTED: putative homeodomain transcription factor-like [Megachile rotundata]

 Score = 84.7 bits (208), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 39/46 (84%), Positives = 40/46 (86%)

Query: 17 YQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVR 62
          YQKKIG YDKQQWE TVEQ IL GFTHVP +TAKLKTE IDVDLVR
Sbjct: 10 YQKKIGTYDKQQWEKTVEQHILGGFTHVPMRTAKLKTEFIDVDLVR 55

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307193677|gb|EFN76360.1| Putative homeodomain transcription factor [Harpegnathos saltator]

 Score = 83.6 bits (205), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/46 (80%), Positives = 40/46 (86%)

Query: 17 YQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVR 62
          YQKKIG YDKQQWE T+EQ IL G TH+P +TAKLKTELIDVDLVR
Sbjct: 1  YQKKIGTYDKQQWERTIEQHILRGLTHIPMRTAKLKTELIDVDLVR 46

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307188201|gb|EFN73033.1| Putative homeodomain transcription factor [Camponotus floridanus]

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/46 (80%), Positives = 41/46 (89%)

Query: 17 YQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVR 62
          YQKKIG YDKQQWE T+EQ IL+G TH+P +TAKLKTELIDVDLVR
Sbjct: 10 YQKKIGTYDKQQWERTIEQYILDGLTHIPMRTAKLKTELIDVDLVR 55

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332022697|gb|EGI62974.1| Putative homeodomain transcription factor [Acromyrmex echinatior]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/46 (80%), Positives = 40/46 (86%)

Query: 17 YQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVR 62
          YQKKIG YDKQQWE T+EQ IL+G THVP +T KLKTELIDVDLVR
Sbjct: 10 YQKKIGTYDKQQWERTIEQHILDGLTHVPMRTTKLKTELIDVDLVR 55

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	74
FB|FBgn0028579	880	phtf "phtf" [Drosophila melano	0.662	0.055	0.734	1.2e-12
UNIPROTKB|B3KQZ2	546	PHTF2 "cDNA FLJ33324 fis, clon	0.675	0.091	0.62	3e-11
MGI|MGI:1916020	747	Phtf2 "putative homeodomain tr	0.675	0.066	0.62	4.8e-11
ZFIN|ZDB-GENE-040711-4	737	zgc:92022 "zgc:92022" [Danio r	0.675	0.067	0.64	6.1e-11
RGD|620426	102	Phtf1 "putative homeodomain tr	0.621	0.450	0.586	1.5e-10
UNIPROTKB|Q5ZKN3	752	PHTF2 "Putative homeodomain tr	0.621	0.061	0.652	4.5e-10
UNIPROTKB|B4DGS8	233	PHTF1 "Putative homeodomain tr	0.621	0.197	0.565	7.9e-10
RGD|1310593	739	Phtf2 "putative homeodomain tr	0.608	0.060	0.644	1.9e-09
UNIPROTKB|F1MNW1	751	PHTF2 "Uncharacterized protein	0.675	0.066	0.574	2e-09
UNIPROTKB|Q08DA4	762	PHTF1 "Putative homeodomain tr	0.621	0.060	0.586	2e-09

FB|FBgn0028579 phtf "phtf" [Drosophila melanogaster (taxid:7227)]

 Score = 180 (68.4 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 36/49 (73%), Positives = 39/49 (79%)

Query:    14 VIGYQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVR 62
             V  YQK+IG YDKQ+WE TVEQRIL+GF  V  K  KLKTELIDVDLVR
Sbjct:     7 VAWYQKRIGTYDKQEWEKTVEQRILDGFNSVNLKNTKLKTELIDVDLVR 55

GO:0005634 "nucleus" evidence=ISM

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISM

GO:0046983 "protein dimerization activity" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISM

UNIPROTKB|B3KQZ2 PHTF2 "cDNA FLJ33324 fis, clone BNGH42008743, highly similar to Homo sapiens putative homeodomain transcription factor 2 (PHTF2), mRNA" [Homo sapiens (taxid:9606)]

 Score = 164 (62.8 bits), Expect = 3.0e-11, P = 3.0e-11
 Identities = 31/50 (62%), Positives = 40/50 (80%)

Query:    13 SVIGYQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVR 62
             +++ YQKKIGAYD+Q WE +VEQR + G  + PKKTA +K +LIDVDLVR
Sbjct:     8 AIVWYQKKIGAYDQQIWEKSVEQREIKGLRNKPKKTAHVKPDLIDVDLVR 57

GO:0003677 "DNA binding" evidence=IEA

MGI|MGI:1916020 Phtf2 "putative homeodomain transcription factor 2" [Mus musculus (taxid:10090)]

 Score = 164 (62.8 bits), Expect = 4.8e-11, P = 4.8e-11
 Identities = 31/50 (62%), Positives = 40/50 (80%)

Query:    13 SVIGYQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVR 62
             +++ YQKKIGAYD+Q WE +VEQR + G  + PKKTA +K +LIDVDLVR
Sbjct:     8 AIVWYQKKIGAYDQQIWEKSVEQREIKGLRNKPKKTAHVKPDLIDVDLVR 57

GO:0003674 "molecular_function" evidence=ND

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-040711-4 zgc:92022 "zgc:92022" [Danio rerio (taxid:7955)]

 Score = 163 (62.4 bits), Expect = 6.1e-11, P = 6.1e-11
 Identities = 32/50 (64%), Positives = 39/50 (78%)

Query:    13 SVIGYQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVR 62
             +V+ YQKKIGAYD+Q WE +VEQR + G  + PKKT  +K ELIDVDLVR
Sbjct:     8 AVLWYQKKIGAYDQQIWEKSVEQREIKGLRNKPKKTGHVKPELIDVDLVR 57

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

RGD|620426 Phtf1 "putative homeodomain transcription factor 1" [Rattus norvegicus (taxid:10116)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 27/46 (58%), Positives = 35/46 (76%)

Query:    17 YQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVR 62
             YQKKIGAYD+Q WE ++EQ  + GF + PKK   +K +LIDVDL+R
Sbjct:    12 YQKKIGAYDQQIWEKSIEQTQIKGFKNKPKKMGHIKPDLIDVDLIR 57

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005801 "cis-Golgi network" evidence=IDA

GO:0007283 "spermatogenesis" evidence=NAS

GO:0016021 "integral to membrane" evidence=TAS

UNIPROTKB|Q5ZKN3 PHTF2 "Putative homeodomain transcription factor 2" [Gallus gallus (taxid:9031)]

 Score = 155 (59.6 bits), Expect = 4.5e-10, P = 4.5e-10
 Identities = 30/46 (65%), Positives = 36/46 (78%)

Query:    17 YQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVR 62
             YQKKIGAYD+Q WE +VEQR + G  + PKKT  +K +LIDVDLVR
Sbjct:    12 YQKKIGAYDQQIWEKSVEQREIKGLRNKPKKTGHVKPDLIDVDLVR 57

GO:0003677 "DNA binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|B4DGS8 PHTF1 "Putative homeodomain transcription factor 1" [Homo sapiens (taxid:9606)]

 Score = 142 (55.0 bits), Expect = 7.9e-10, P = 7.9e-10
 Identities = 26/46 (56%), Positives = 34/46 (73%)

Query:    17 YQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVR 62
             YQKKIGAYD+Q WE ++EQ  + G  + PKK   +K +LIDVDL+R
Sbjct:    12 YQKKIGAYDQQIWEKSIEQTQIKGLKNKPKKMGHIKPDLIDVDLIR 57

GO:0003677 "DNA binding" evidence=IEA

RGD|1310593 Phtf2 "putative homeodomain transcription factor 2" [Rattus norvegicus (taxid:10116)]

 Score = 149 (57.5 bits), Expect = 1.9e-09, P = 1.9e-09
 Identities = 29/45 (64%), Positives = 36/45 (80%)

Query:    18 QKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVR 62
             Q+KIGAYD+Q WE +VEQR + G  + PKKTA +K +LIDVDLVR
Sbjct:     4 QRKIGAYDQQIWEKSVEQREIKGLRNKPKKTAHVKPDLIDVDLVR 48

GO:0005783 "endoplasmic reticulum" evidence=ISO

UNIPROTKB|F1MNW1 PHTF2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 149 (57.5 bits), Expect = 2.0e-09, P = 2.0e-09
 Identities = 31/54 (57%), Positives = 40/54 (74%)

Query:    13 SVIGYQKKIGAYDKQQWETTVEQRILN----GFTHVPKKTAKLKTELIDVDLVR 62
             +++ YQKKIGAYD+Q WE +VEQR +     G  + PKKTA +K +LIDVDLVR
Sbjct:     8 AIVWYQKKIGAYDQQIWEKSVEQREIKFIKLGLRNKPKKTAHVKPDLIDVDLVR 61

GO:0005783 "endoplasmic reticulum" evidence=IEA

UNIPROTKB|Q08DA4 PHTF1 "Putative homeodomain transcription factor 1" [Bos taurus (taxid:9913)]

 Score = 149 (57.5 bits), Expect = 2.0e-09, P = 2.0e-09
 Identities = 27/46 (58%), Positives = 35/46 (76%)

Query:    17 YQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVR 62
             YQKKIGAYD+Q WE ++EQ  + GF + PKK   +K +LIDVDL+R
Sbjct:    12 YQKKIGAYDQQIWEKSIEQTQIKGFKNKPKKMGHIKADLIDVDLIR 57

GO:0005634 "nucleus" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8CB19	PHTF2_MOUSE	No assigned EC number	0.62	0.6756	0.0669	yes	N/A
Q8N3S3	PHTF2_HUMAN	No assigned EC number	0.6086	0.5675	0.0535	yes	N/A
Q5ZKN3	PHTF2_CHICK	No assigned EC number	0.6521	0.6216	0.0611	yes	N/A
Q9V9A8	PHTF_DROME	No assigned EC number	0.7608	0.6216	0.0522	yes	N/A
Q08DA4	PHTF1_BOVIN	No assigned EC number	0.5869	0.6216	0.0603	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	74
pfam12129	159	pfam12129, Phtf-FEM1B_bdg, Male germ-cell putative	4e-22

>gnl|CDD|152564 pfam12129, Phtf-FEM1B_bdg, Male germ-cell putative homeodomain transcription factor

 Score = 83.1 bits (205), Expect = 4e-22
 Identities = 29/46 (63%), Positives = 36/46 (78%)

Query: 17 YQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVR 62
          YQKKIGAYD+Q WE ++EQ+I+ G  + PKK   LK +LIDVDLVR
Sbjct: 10 YQKKIGAYDQQIWEKSIEQKIIKGLNNKPKKNGHLKPDLIDVDLVR 55

This domain is found in bacteria and eukaryotes, and is typically between 101 and 140 amino acids in length. Phtf proteins do not display any sequence similarity to known or predicted proteins, but their conservation among species suggests an essential function. The 84 kDa Phtf1 protein is an integral membrane protein, anchored to a cell membrane by six to eight trans-membrane domains, that is associated with a domain of the endoplasmic reticulum (ER) juxtaposed to the Golgi apparatus. It is present during meiosis and spermiogenesis, and, by the end of spermiogenesis, is released from the mature spermatozoon within the residual bodies. Phtf1 enhances the binding of FEM1B -feminisation homologue 1B - to cell membranes. Fem-1 was initially identified in the signaling pathway for sex determination, as well as being implicated in apoptosis, but its biochemical role is still unclear, and neither FEM1B nor PHTF1 is directly implicated in apoptosis in spermatogenesis. It is the ANK domain of FEM1B that is necessary for the interaction with the N-terminal region of Phtf1. Length = 159

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	74
PF12129	159	Phtf-FEM1B_bdg: Male germ-cell putative homeodomai	100.0

>PF12129 Phtf-FEM1B_bdg: Male germ-cell putative homeodomain transcription factor; InterPro: IPR021980 This domain is found in bacteria and eukaryotes, and is typically between 101 and 140 amino acids in length

Probab=100.00  E-value=5.7e-43  Score=250.17  Aligned_cols=67  Identities=51%  Similarity=0.671  Sum_probs=64.6

Q ss_pred             cccchhhhhhHHhhhchhHHHHHHHhhhhhccCCccccceecccCCceEEEeeeeeceecccCccCC
Q psy3838           8 MCSVTSVIGYQKKIGAYDKQQWETTVEQRILNGFTHVPKKTAKLKTELIDVDLVRVVFINDFKSIEH   74 (74)
Q Consensus         8 ~~~~~~i~wyqkKig~YD~q~WEKsvEq~~l~gl~~kpkk~~~iKpdLIDvDLVrGstF~KaKp~~~   74 (74)
                      |+.+|+|+|||+|||+||+|+|||||||++++||+|+|||++++|||||||||||||||+||||+.+
T Consensus         1 ~~~~d~i~wyQkKig~YD~q~WEksveq~~l~gl~~~~kk~~~lk~dLIDvDLVRGStF~KAKP~~~   67 (159)
T PF12129_consen    1 SKVDDAIAWYQKKIGAYDQQIWEKSVEQRELKGLTNKPKKTGHLKPDLIDVDLVRGSTFPKAKPESP   67 (159)
T ss_pred             CcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccccCCcccCCCChhheeeeeeeeecccccCCcch
Confidence            4678999999999999999999999999999999999999999999999999999999999999864

Phtf proteins do not display any sequence similarity to known or predicted proteins, but their conservation among species suggests an essential function. The 84 kDa Phtf1 protein is an integral membrane protein, anchored to a cell membrane by six to eight trans-membrane domains, that is associated with a domain of the endoplasmic reticulum (ER) juxtaposed to the Golgi apparatus. It is present during meiosis and spermiogenesis, and, by the end of spermiogenesis, is released from the mature spermatozoon within the residual bodies []. Phtf1 enhances the binding of FEM1B -feminisation homologue 1B - to cell membranes. Fem-1 was initially identified in the signaling pathway for sex determination, as well as being implicated in apoptosis, but its biochemical role is still unclear, and neither FEM1B nor PHTF1 is directly implicated in apoptosis in spermatogenesis. It is the ANK domain of FEM1B that is necessary for the interaction with the N-terminal region of Phtf1 [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00