Psyllid ID: psy3867

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-

MGSKWLTQIYVECMTVLSESSLIVVNVMDPHPRACSKEQVLNGDEEITQNIRVVFSFSRADKLCPRCNTNNGEVVLRLKDIYCKACLLQYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMKYFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPVHVPSLATLADPLASLQKAAESFVTDLQTNFPSTVSTVFRTADKLSLDLTSMNVNNTCLLCKAPLDTRADLASSSMGATRFSRYVSNATREQLSHVIISSESPDHASKVTTDVNQTVGSQDIPEKSVNGSEDIPNQIVNGMQYTPNEKVSRTEDNEGPDNLQRSLCYACQYVVKDMTSDKDIGEGILKKCLQEKSLNEMEDQIRDFLL

ccccHHHHHHHHHHHHccccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccHHHHHHHHHHHHHHcccccccEEEEEEEEEccccccccHHHHHHHHHHHHHHHccccccEEEccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHHccccccccccccccccccccEEEEEccccccHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccccccccccccHHHHccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHcc

ccccHHEEEEEEEHHEEccccEEEEEcccccccccccHHHccccHHHHcccccccccccccHHHHHcccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEcccccHHHHHHHHHHHHHHccccccEEEEEEEEEEccccccccHHHHHHHHHHHHHHHccccEEEEEcHHccccHHHHHHHcccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccEEEEcccHHHHHHHHHHHHHccccccHcHcccccccccccEEEEccHHHHHHHHHHHHHHHHccccEEEcccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEcHHHHHccccccccccccccccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHcc

MGSKWLTQIYVECMTVLSESSLIVVnvmdphpracskeqvlngdeeiTQNIRVVFSFsradklcprcntnngeVVLRLKDIYCKACLLQYLNHKFRAAlgkskmmrpqdKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIyiddgsisqVSISERKANNAQIATAMKYFDSYFTCLEqalepdnmklytdvaelpleqfakdSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANislgkgahvpldvgfsddrtgdiitlrplrdfsskEVIYYNIfndlspvhvpslatLADPLASLQKAAESFVTDlqtnfpstvsTVFRTADKLSLDltsmnvnntcllckapldtradlasssmgatrFSRYVSNATREQLSHVIIssespdhaskvttdvnqtvgsqdipeksvngsedipnqivngmqytpnekvsrtednegpdnlqRSLCYACQYVvkdmtsdkdiGEGILKKCLQEKSLNEMEDQIRDFLL

MGSKWLTQIYVECMTVLSESSLIVVNVMDPHPRACSKeqvlngdeeitQNIRVVFSfsradklcprcntNNGEVVLRLKDIYCKACLLQYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMKYFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDIItlrplrdfssKEVIYYNIFNDLSPVHVPSLATLADPLASLQKAAESFVTDlqtnfpstvSTVFRTADKLSLDLTSMNVNNTCLLCKAPLDTRADLASSSMGATRFSRYVSNATREQLSHViissespdhasKVTTdvnqtvgsqdipeksvngsedipnqivngmqytpNEKVSRTEDNEGPDNLQRSLCYACQYVVKDMTSDKDIGEGILKKclqekslnemedqirdfll

MGSKWLTQIYVECMTVLSESSLIVVNVMDPHPRACSKEQVLNGDEEITQNIRVVFSFSRADKLCPRCNTNNGEVVLRLKDIYCKACLLQYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMKYFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRqyllqtlrqnlllqAAKKLNCTKIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPVHVPSLATLADPLASLQKAAESFVTDLQTNFPSTVSTVFRTADKLSLDLTSMNVNNTCLLCKAPLDTRADLASSSMGATRFSRYVSNATREQLSHVIISSESPDHASKVTTDVNQTVGSQDIPEKSVNGSEDIPNQIVNGMQYTPNEKVSRTEDNEGPDNLQRSLCYACQYVVKDMTSDKDIGEGILKKCLQEKSLNEMEDQIRDFLL

****WLTQIYVECMTVLSESSLIVVNVMDPHPRACSKEQVLNGDEEITQNIRVVFSFSRADKLCPRCNTNNGEVVLRLKDIYCKACLLQYLNHKFRAALGKSKMM**QDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMKYFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPVHVPSLATLADPLASLQKAAESFVTDLQTNFPSTVSTVFRTADKLSLDLTSMNVNNTCLLCKAPLDTR**********************************************************************************************RSLCYACQYVVKDMTSDKDIGEGILKKCL*****************

***KWLTQIYVECMTVLSESSLIVVNVMDP************************************CNTNNGEVVLRLKDIYCKACLLQYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMKYFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANISLGKGAHVPLDVGF*DDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPVHVPSLATLADPLASLQKAAESFVTDLQTNFPSTVSTVFRTADKL***********TCLLCKAPLDTRAD*****************************************************************************************NLQRSLCYACQYVVKDMTSDKDIGEGIL**************QIRDFLL

**SKWLTQIYVECMTVLSESSLIVVNVMDPHPRACSKEQVLNGDEEITQNIRVVFSFSRADKLCPRCNTNNGEVVLRLKDIYCKACLLQYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMKYFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPVHVPSLATLADPLASLQKAAESFVTDLQTNFPSTVSTVFRTADKLSLD*****VNNTCLLCKAPLDTRADLASSSMGATRFSRYVSNATRE**************************************************************DNEGPDNLQRSLCYACQYVVKDMTSDKDIGEGILKKCLQEKSLNEMEDQIRDFLL

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		521	2.2.26 [Sep-21-2011]
Q6DC53		501	Cytoplasmic tRNA 2-thiola	yes	N/A	0.857	0.892	0.319	9e-65
Q28ES8		516	Cytoplasmic tRNA 2-thiola	yes	N/A	0.811	0.819	0.307	9e-60
Q08B12		512	Cytoplasmic tRNA 2-thiola	N/A	N/A	0.811	0.826	0.303	2e-59
Q32NV1		512	Cytoplasmic tRNA 2-thiola	N/A	N/A	0.811	0.826	0.301	4e-59
Q3SZG9		501	Cytoplasmic tRNA 2-thiola	yes	N/A	0.809	0.842	0.286	7e-52
Q2VPK5		515	Cytoplasmic tRNA 2-thiola	yes	N/A	0.639	0.646	0.313	1e-51
Q3B7U4		528	Cytoplasmic tRNA 2-thiola	yes	N/A	0.760	0.75	0.290	1e-45
A0NEF7		417	Cytoplasmic tRNA 2-thiola	yes	N/A	0.737	0.920	0.286	6e-45
B3NM45		404	Cytoplasmic tRNA 2-thiola	N/A	N/A	0.619	0.799	0.340	3e-44
B0X911		425	Cytoplasmic tRNA 2-thiola	N/A	N/A	0.675	0.828	0.296	3e-43

>sp\|Q6DC53\|CTU2_DANRE Cytoplasmic tRNA 2-thiolation protein 2 OS=Danio rerio GN=ctu2 PE=2 SV=1	Back alignment and function desciption

 Score =  248 bits (633), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 171/535 (31%), Positives = 276/535 (51%), Gaps = 88/535 (16%)

Query: 35  CSKEQVLNGDEEITQNIRVVFSFSRADKLCPRCNTNNGEVVLRLKDIYCKACLLQYLNHK 94
           C  E+  NG E   + I V    S  ++ C +C      +++R+ D +C++C  +Y  HK
Sbjct: 2   CQVEEDYNGLECNQEKIPV----SGLNRKCMKCKEGTAVLIIRVSDAFCRSCFKEYFIHK 57

Query: 95  FRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSI 154
           FRA LGK++++ PQ+KVL+A SG  +S  +L  +QEG+   + K++ F    +YIDDG  
Sbjct: 58  FRAMLGKNRVIFPQEKVLLAVSGGAASCTMLSQVQEGLSRDAPKKLRFMPGIVYIDDGGA 117

Query: 155 SQVSISERKANNAQIA-----TAMKYF----------------------DSYFTCLEQAL 187
              S  ER+ + +Q+      T   YF                      D    C +QA+
Sbjct: 118 CGRSEDERQTSISQLKNIFTQTGFPYFIVPLEKVFSLPTSVLVPGTFDPDPSNPCYKQAV 177

Query: 188 EP---DNMKLYTD-----VAELPLEQFAKDSE----INKMFQTVTTLSSRQYLLQTLRQN 235
           +    +  KL  +     VA+L LE  A   E    + ++F ++ TLS++Q +LQTLRQ+
Sbjct: 178 DKYLKEKQKLREEEAVCAVAQLNLEDSAYLPEHKLALQRLFSSLKTLSAKQEMLQTLRQH 237

Query: 236 LLLQAAKKLNCTKIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLR 295
           L+L  A++ + +K+   E+ + LA K+++NI+LG+GA +  D GFSD R GD++ +RP+R
Sbjct: 238 LILHVARENSYSKVMMGESCSRLAVKLLSNIALGRGAALASDTGFSDPRFGDVVIVRPMR 297

Query: 296 DFSSKEVIYYNIFNDLSPVHVPSLATLADPLASLQKAAESFVTDLQTNFPSTVSTVFRTA 355
           D+SSKE+ +YN    +  V +P L T +   AS+Q+  ESFVT+LQ +FPSTVST++RT+
Sbjct: 298 DYSSKEITFYNRMFHVPSVFIPGLDTKSHDKASIQRLTESFVTNLQADFPSTVSTIYRTS 357

Query: 356 DKLSL------DLTSMNVNNTCLLCKAPLDTRADLASSSMGATRFSRYVSNATREQLSHV 409
           +KL          T     + CLLC   LDT AD AS+         + +    EQLS +
Sbjct: 358 EKLHTVRPPQSQSTEPEPASKCLLCLCALDTTADKASA---------FHATLISEQLSQL 408

Query: 410 IISSESPDHASKVTTDVNQTVGSQDIPEKSVNGSED---IPNQIVNGMQYTPNEKVSRTE 466
            +                   GS D+    V GS D   + +Q         +++    +
Sbjct: 409 RLQE-----------------GSVDL----VAGSSDQCCVEDQTCGTSGCCSSKRTPVQQ 447

Query: 467 DNEGPDNLQRSLCYACQYVVKDMTSDKDIGEGILKKCLQEKSLNEMEDQIRDFLL 521
           D      L+  LCY+C+  VKDM +   +   IL +  + +  ++M+ +I ++LL
Sbjct: 448 D------LKTLLCYSCRLTVKDMAAVNTLPPYILTEAEKRQRRSQMKVEISEYLL 496

Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). May act by forming a heterodimer with ctu1/atpbd3 that ligates sulfur from thiocarboxylated urm1 onto the uridine of tRNAs at wobble position.
Danio rerio (taxid: 7955)

>sp\|Q28ES8\|CTU2_XENTR Cytoplasmic tRNA 2-thiolation protein 2 OS=Xenopus tropicalis GN=ctu2 PE=2 SV=1	Back alignment and function description

>sp\|Q08B12\|CTU2A_XENLA Cytoplasmic tRNA 2-thiolation protein 2 A OS=Xenopus laevis GN=ctu2-a PE=2 SV=1	Back alignment and function description

>sp\|Q32NV1\|CTU2B_XENLA Cytoplasmic tRNA 2-thiolation protein 2 B OS=Xenopus laevis GN=ctu2-b PE=2 SV=2	Back alignment and function description

>sp\|Q3SZG9\|CTU2_BOVIN Cytoplasmic tRNA 2-thiolation protein 2 OS=Bos taurus GN=CTU2 PE=2 SV=1	Back alignment and function description

>sp\|Q2VPK5\|CTU2_HUMAN Cytoplasmic tRNA 2-thiolation protein 2 OS=Homo sapiens GN=CTU2 PE=1 SV=1	Back alignment and function description

>sp\|Q3B7U4\|CTU2_RAT Cytoplasmic tRNA 2-thiolation protein 2 OS=Rattus norvegicus GN=Ctu2 PE=2 SV=1	Back alignment and function description

>sp\|A0NEF7\|CTU2_ANOGA Cytoplasmic tRNA 2-thiolation protein 2 OS=Anopheles gambiae GN=AGAP005651 PE=3 SV=2	Back alignment and function description

>sp\|B3NM45\|CTU2_DROER Cytoplasmic tRNA 2-thiolation protein 2 OS=Drosophila erecta GN=GG21627 PE=3 SV=1	Back alignment and function description

>sp\|B0X911\|CTU2_CULQU Cytoplasmic tRNA 2-thiolation protein 2 OS=Culex quinquefasciatus GN=CPIJ015900 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		521
405976867		702	Cytoplasmic tRNA 2-thiolation protein 2	0.836	0.621	0.342	2e-67
443701547		452	hypothetical protein CAPTEDRAFT_223722 [	0.798	0.920	0.310	1e-63
57525867		501	cytoplasmic tRNA 2-thiolation protein 2	0.857	0.892	0.319	6e-63
432950093		486	PREDICTED: cytoplasmic tRNA 2-thiolation	0.823	0.882	0.321	4e-62
410900400		586	PREDICTED: cytoplasmic tRNA 2-thiolation	0.863	0.767	0.310	3e-59
193650171		438	PREDICTED: cytoplasmic tRNA 2-thiolation	0.767	0.913	0.305	3e-58
47125206		518	LOC431806 protein [Xenopus laevis]	0.811	0.816	0.303	5e-58
89886161		516	cytoplasmic tRNA 2-thiolation protein 2	0.811	0.819	0.307	6e-58
332373848		402	unknown [Dendroctonus ponderosae]	0.641	0.830	0.357	7e-58
291290957		512	cytoplasmic tRNA 2-thiolation protein 2	0.811	0.826	0.303	1e-57

>gi\|405976867\|gb\|EKC41346.1\| Cytoplasmic tRNA 2-thiolation protein 2 [Crassostrea gigas]	Back alignment and taxonomy information

 Score =  263 bits (671), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 163/476 (34%), Positives = 260/476 (54%), Gaps = 40/476 (8%)

Query: 61  DKLCPRCNTNNGEVVLRLKDIYCKACLLQYLNHKFRAALGKSKMMRPQDKVLVAFSGSHS 120
           ++ C +C      +V R+ D +CK C + Y+ HKFRAA+GKSK++R  + VLV  SG  +
Sbjct: 245 ERTCMKCE-KKAVLVTRVNDAFCKECFMVYVTHKFRAAIGKSKLIRDGESVLVGVSGGQA 303

Query: 121 SMALLHLLQEGMQLSSHKRILFSVCAIYIDDGSISQVSISERKANNAQIATAMKY--FDS 178
           S  LLHL+QEG+   +HK++ F    ++ID+G+   +S  ER AN  Q+   M+   F  
Sbjct: 304 SSCLLHLIQEGLSGRAHKKLRFKPGLVFIDEGATIGMSAEERLANCTQVLEIMEKTGFPC 363

Query: 179 YFTCLEQALEPD-----NMKLYTDVAEL-------PLEQFAK-DSEINKMFQTVTTLSSR 225
           Y   LEQA+E +     N    TD A +        L ++ K + E+  +  ++ ++S++
Sbjct: 364 YLKALEQAMELEREAVTNTADQTDTASMTSVEDLTKLHRYDKAEEELRALMDSLKSVSAK 423

Query: 226 QYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDRT 285
           + L+++LR  +L+  A K   +K+   +  T LA +++ +I+ G+GAHV +D  F+D+R 
Sbjct: 424 EDLIKSLRHKILIDLALKKGYSKVMLGDCSTRLAVRLLTDIAQGRGAHVAMDTAFADNRC 483

Query: 286 GDIITLRPLRDFSSKEVIYYNIFNDLSPVHVPSLATLADPLASLQKAAESFVTDLQTNFP 345
            DI  +RP+RDFSSKEV  +NI N++  V +P + T    + S++   E FVT LQ  +P
Sbjct: 484 NDITIVRPIRDFSSKEVAMFNILNNVPSVFIPRITTKVYSV-SIEHLTERFVTGLQAEYP 542

Query: 346 STVSTVFRTADKLSLDLTSMNVNNTCLLCKAPLDTRADLASSSMGATRFSRYVSNATREQ 405
           ST S + RT +KL  +  S +  N C +C+APLDT    +SS++ A RFS  VS     +
Sbjct: 543 STTSNIMRTGEKLHTEKKSSS-ENQCAICQAPLDTDVP-SSSALSAVRFSETVS-----R 595

Query: 406 LSHVIISSESPDHASKVTTDVNQTVGSQDIPEKSVNGSEDIPNQIVNGMQYTPNEKVSRT 465
            S V +S  S D A     D  +T  S+   E    G  D       G   +   K++R 
Sbjct: 596 CSSVTLSIFSTDTACDGGGD--KTCQSEGQKESECCGRGD-------GSCQSKESKLTR- 645

Query: 466 EDNEGPDNLQRSLCYACQYVVKDMTSDKDIGEGILKKCLQEKSLNEMEDQIRDFLL 521
                 D ++ +LCYAC+ ++KD+     + + IL    Q +   +M+ +I DFLL
Sbjct: 646 ------DEVESALCYACRLLIKDLGDVSKLPKHILDDISQRQRRTKMKSEIEDFLL 695

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi\|443701547\|gb\|ELT99947.1\| hypothetical protein CAPTEDRAFT_223722 [Capitella teleta]	Back alignment and taxonomy information

>gi\|57525867\|ref\|NP_001003560.1\| cytoplasmic tRNA 2-thiolation protein 2 [Danio rerio] gi\|82182163\|sp\|Q6DC53.1\|CTU2_DANRE RecName: Full=Cytoplasmic tRNA 2-thiolation protein 2 gi\|50417844\|gb\|AAH78233.1\| Zgc:101113 [Danio rerio]	Back alignment and taxonomy information

>gi\|432950093\|ref\|XP_004084384.1\| PREDICTED: cytoplasmic tRNA 2-thiolation protein 2-like [Oryzias latipes]	Back alignment and taxonomy information

>gi\|410900400\|ref\|XP_003963684.1\| PREDICTED: cytoplasmic tRNA 2-thiolation protein 2-like [Takifugu rubripes]	Back alignment and taxonomy information

>gi\|193650171\|ref\|XP_001946547.1\| PREDICTED: cytoplasmic tRNA 2-thiolation protein 2 A-like [Acyrthosiphon pisum]	Back alignment and taxonomy information

>gi\|47125206\|gb\|AAH70752.1\| LOC431806 protein [Xenopus laevis]	Back alignment and taxonomy information

>gi|89886161|ref|NP_001034829.1| cytoplasmic tRNA 2-thiolation protein 2 [Xenopus (Silurana) tropicalis] gi|123892781|sp|Q28ES8.1|CTU2_XENTR RecName: Full=Cytoplasmic tRNA 2-thiolation protein 2 gi|89269899|emb|CAJ83521.1| novel protein [Xenopus (Silurana) tropicalis] gi|189441975|gb|AAI67302.1| hypothetical LOC548371 [Xenopus (Silurana) tropicalis] gi|213624140|gb|AAI70700.1| hypothetical LOC548371 [Xenopus (Silurana) tropicalis] gi|213625482|gb|AAI70702.1| hypothetical LOC548371 [Xenopus (Silurana) tropicalis]

Back alignment and taxonomy information

>gi\|332373848\|gb\|AEE62065.1\| unknown [Dendroctonus ponderosae]	Back alignment and taxonomy information

>gi\|291290957\|ref\|NP_001167511.1\| cytoplasmic tRNA 2-thiolation protein 2 A [Xenopus laevis] gi\|123884208\|sp\|Q08B12.1\|CTU2A_XENLA RecName: Full=Cytoplasmic tRNA 2-thiolation protein 2 A gi\|115528674\|gb\|AAI24922.1\| Unknown (protein for MGC:154644) [Xenopus laevis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		521
UNIPROTKB\|Q08B12		512	ctu2-a "Cytoplasmic tRNA 2-thi	0.391	0.398	0.364	8.8e-63
UNIPROTKB\|Q32NV1		512	ctu2-b "Cytoplasmic tRNA 2-thi	0.391	0.398	0.360	1.4e-62
ZFIN\|ZDB-GENE-040801-79		501	ctu2 "cytosolic thiouridylase	0.416	0.433	0.368	4.9e-57
UNIPROTKB\|Q28ES8		516	ctu2 "Cytoplasmic tRNA 2-thiol	0.404	0.408	0.345	2.2e-55
UNIPROTKB\|A0NEF7		417	AGAP005651 "Cytoplasmic tRNA 2	0.692	0.865	0.289	2.6e-45
UNIPROTKB\|Q2VPK5		515	CTU2 "Cytoplasmic tRNA 2-thiol	0.364	0.368	0.355	1.4e-44
UNIPROTKB\|F1MJ97		501	CTU2 "Cytoplasmic tRNA 2-thiol	0.372	0.387	0.34	1.3e-43
MGI\|MGI:1914215		514	Ctu2 "cytosolic thiouridylase	0.395	0.400	0.334	2.5e-43
RGD\|1562594		528	Ctu2 "cytosolic thiouridylase	0.376	0.371	0.357	7.2e-43
UNIPROTKB\|Q3SZG9		501	CTU2 "Cytoplasmic tRNA 2-thiol	0.372	0.387	0.335	9e-43

UNIPROTKB\|Q08B12 ctu2-a "Cytoplasmic tRNA 2-thiolation protein 2 A" [Xenopus laevis (taxid:8355)]	Back alignment and assigned GO terms

 Score = 375 (137.1 bits), Expect = 8.8e-63, Sum P(3) = 8.8e-63
 Identities = 77/211 (36%), Positives = 128/211 (60%)

Query:   193 KLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRXXXXXXXXXXXXXXAAKKLNCTKIFTA 252
             K+Y      P +   +  ++ ++F +  TL+++               A+    +K+ T 
Sbjct:   207 KMYQSTCSHPPDMHTQ--KLKQLFASAKTLTAKQQLLHTLRSHLILHIARTCGYSKVMTG 264

Query:   253 ETQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLS 312
             E+ T L+ ++++N+SLG+GA +PLD GF D R GD+  +RP+R++SSKE+ YYN F ++S
Sbjct:   265 ESCTRLSIRLLSNVSLGRGAFLPLDTGFCDSRYGDVDIIRPMREYSSKEIAYYNRFFNVS 324

Query:   313 PVHVPSLATLADPLASLQKAAESFVTDLQTNFPSTVSTVFRTADKLSLDLTSMN----VN 368
             P+ +P+L T A   +S+Q   E FV  LQ +FPSTVST++RT++KL++     +      
Sbjct:   325 PIFIPALDTKASENSSIQHLTEVFVNRLQADFPSTVSTLYRTSEKLNVSKIDADQETCAK 384

Query:   369 NTCLLCKAPLDTRADLASSSMGATRFSRYVS 399
             + CLLC +PLDT+A  AS+   AT+ S ++S
Sbjct:   385 DRCLLCLSPLDTQAGKASA-FSATQLSHHLS 414

GO:0000049 "tRNA binding" evidence=ISS

GO:0002098 "tRNA wobble uridine modification" evidence=ISS

GO:0005829 "cytosol" evidence=ISS

GO:0034227 "tRNA thio-modification" evidence=ISS

UNIPROTKB\|Q32NV1 ctu2-b "Cytoplasmic tRNA 2-thiolation protein 2 B" [Xenopus laevis (taxid:8355)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040801-79 ctu2 "cytosolic thiouridylase subunit 2 homolog (S. pombe)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|Q28ES8 ctu2 "Cytoplasmic tRNA 2-thiolation protein 2" [Xenopus (Silurana) tropicalis (taxid:8364)]	Back alignment and assigned GO terms

UNIPROTKB\|A0NEF7 AGAP005651 "Cytoplasmic tRNA 2-thiolation protein 2" [Anopheles gambiae (taxid:7165)]	Back alignment and assigned GO terms

UNIPROTKB\|Q2VPK5 CTU2 "Cytoplasmic tRNA 2-thiolation protein 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MJ97 CTU2 "Cytoplasmic tRNA 2-thiolation protein 2" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

MGI\|MGI:1914215 Ctu2 "cytosolic thiouridylase subunit 2 homolog (S. pombe)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1562594 Ctu2 "cytosolic thiouridylase subunit 2 homolog (S. pombe)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|Q3SZG9 CTU2 "Cytoplasmic tRNA 2-thiolation protein 2" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6DC53	CTU2_DANRE	No assigned EC number	0.3196	0.8579	0.8922	yes	N/A
Q9VIV3	CTU2_DROME	No assigned EC number	0.3265	0.6238	0.8024	yes	N/A
Q2VPK5	CTU2_HUMAN	No assigned EC number	0.3134	0.6391	0.6466	yes	N/A
Q3SZG9	CTU2_BOVIN	No assigned EC number	0.2865	0.8099	0.8423	yes	N/A
Q28ES8	CTU2_XENTR	No assigned EC number	0.3078	0.8119	0.8197	yes	N/A
Q29K59	CTU2_DROPS	No assigned EC number	0.3188	0.6199	0.7975	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		521
pfam10288		104	pfam10288, DUF2392, Protein of unknown function (D	4e-29
COG0037		298	COG0037, MesJ, tRNA(Ile)-lysidine synthase MesJ [C	2e-12
TIGR02432		189	TIGR02432, lysidine_TilS_N, tRNA(Ile)-lysidine syn	1e-09
cd01993		185	cd01993, Alpha_ANH_like_II, This is a subfamily of	1e-07
cd01992		185	cd01992, PP-ATPase, N-terminal domain of predicted	1e-05
pfam01171		182	pfam01171, ATP_bind_3, PP-loop family	4e-05

>gnl\|CDD\|220676 pfam10288, DUF2392, Protein of unknown function (DUF2392)	Back alignment and domain information

 Score =  109 bits (276), Expect = 4e-29
 Identities = 44/104 (42%), Positives = 61/104 (58%), Gaps = 3/104 (2%)

Query: 258 LATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPVHVP 317
           LA K+++  + G+G+ +P DV   D R  DI  LRPLRD   KE+  Y    +L P+ + 
Sbjct: 1   LAAKLLSLTAKGRGSSIPWDVSDGDSRGNDIKILRPLRDLLLKEIEAYCSLKNLPPLLIN 60

Query: 318 SLATLADPL---ASLQKAAESFVTDLQTNFPSTVSTVFRTADKL 358
           SL  +A  L    S+ +  E +  +LQ N+PSTVSTV RT DKL
Sbjct: 61  SLIQIASKLSKNMSINELTEQYFDNLQENYPSTVSTVVRTGDKL 104

This is a family of proteins conserved from plants to humans. The function is not known. It carries a characteristic GRG sequence motif. Length = 104

>gnl\|CDD\|223115 COG0037, MesJ, tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|233864 TIGR02432, lysidine_TilS_N, tRNA(Ile)-lysidine synthetase, N-terminal domain	Back alignment and domain information

>gnl\|CDD\|238951 cd01993, Alpha_ANH_like_II, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	Back alignment and domain information

>gnl\|CDD\|238950 cd01992, PP-ATPase, N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]	Back alignment and domain information

>gnl\|CDD\|216343 pfam01171, ATP_bind_3, PP-loop family	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		521
KOG2594\|consensus		396		100.0
PRK10696		258	tRNA 2-thiocytidine biosynthesis protein TtcA; Pro	100.0
PF01171		182	ATP_bind_3: PP-loop family; InterPro: IPR011063 Th	99.96
COG0037		298	MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle	99.96
PRK10660		436	tilS tRNA(Ile)-lysidine synthetase; Provisional	99.95
TIGR02432		189	lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-t	99.93
cd01993		185	Alpha_ANH_like_II This is a subfamily of Adenine n	99.93
cd01992		185	PP-ATPase N-terminal domain of predicted ATPase of	99.92
KOG2840\|consensus		347		99.9
PRK08349		198	hypothetical protein; Validated	99.84
PF10288		107	DUF2392: Protein of unknown function (DUF2392); In	99.83
PRK00143		346	mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed	99.83
cd01997		295	GMP_synthase_C The C-terminal domain of GMP synthe	99.82
TIGR00884		311	guaA_Cterm GMP synthase (glutamine-hydrolyzing), C	99.81
PRK00074		511	guaA GMP synthase; Reviewed	99.8
PRK00919		307	GMP synthase subunit B; Validated	99.79
cd01712		177	ThiI ThiI is required for thiazole synthesis in th	99.77
cd01990		202	Alpha_ANH_like_I This is a subfamily of Adenine nu	99.75
PRK14665		360	mnmA tRNA-specific 2-thiouridylase MnmA; Provision	99.73
cd01998		349	tRNA_Me_trans tRNA methyl transferase. This family	99.73
TIGR00268		252	conserved hypothetical protein TIGR00268. The N-te	99.72
PRK08384		381	thiamine biosynthesis protein ThiI; Provisional	99.7
PRK05253		301	sulfate adenylyltransferase subunit 2; Provisional	99.7
TIGR00420		352	trmU tRNA (5-methylaminomethyl-2-thiouridylate)-me	99.69
PRK14664		362	tRNA-specific 2-thiouridylase MnmA; Provisional	99.69
cd01713		173	PAPS_reductase This domain is found in phosphoaden	99.68
PRK14561		194	hypothetical protein; Provisional	99.67
TIGR00342		371	thiazole biosynthesis/tRNA modification protein Th	99.66
PRK13820		394	argininosuccinate synthase; Provisional	99.64
PRK01269		482	tRNA s(4)U8 sulfurtransferase; Provisional	99.63
TIGR02039		294	CysD sulfate adenylyltransferase, small subunit. I	99.62
TIGR00552		250	nadE NAD+ synthetase. NAD+ synthetase is a nearly	99.61
PF03054		356	tRNA_Me_trans: tRNA methyl transferase; InterPro:	99.59
COG1606		269	ATP-utilizing enzymes of the PP-loop superfamily [	99.59
COG0482		356	TrmU Predicted tRNA(5-methylaminomethyl-2-thiourid	99.58
cd01995		169	ExsB ExsB is a transcription regulator related pro	99.57
PRK08576		438	hypothetical protein; Provisional	99.57
PRK01565		394	thiamine biosynthesis protein ThiI; Provisional	99.55
TIGR00364		201	exsB protein. This protein family is represented b	99.53
PRK00509		399	argininosuccinate synthase; Provisional	99.5
TIGR00032		394	argG argininosuccinate synthase. argG in bacteria,	99.49
PF02568		197	ThiI: Thiamine biosynthesis protein (ThiI); InterP	99.48
PRK02090		241	phosphoadenosine phosphosulfate reductase; Provisi	99.47
PRK12563		312	sulfate adenylyltransferase subunit 2; Provisional	99.46
PLN00200		404	argininosuccinate synthase; Provisional	99.46
cd01999		385	Argininosuccinate_Synthase Argininosuccinate synth	99.45
cd00553		248	NAD_synthase NAD+ synthase is a homodimer, which c	99.45
PLN02347		536	GMP synthetase	99.42
PRK13980		265	NAD synthetase; Provisional	99.42
PRK11106		231	queuosine biosynthesis protein QueC; Provisional	99.4
COG0519		315	GuaA GMP synthase, PP-ATPase domain/subunit [Nucle	99.39
TIGR03573		343	WbuX N-acetyl sugar amidotransferase. This enzyme	99.39
PF06508		209	QueC: Queuosine biosynthesis protein QueC; InterPr	99.36
cd01986		103	Alpha_ANH_like Adenine nucleotide alpha hydrolases	99.36
PRK04527		400	argininosuccinate synthase; Provisional	99.34
cd01996		154	Alpha_ANH_like_III This is a subfamily of Adenine	99.21
PF01507		174	PAPS_reduct: Phosphoadenosine phosphosulfate reduc	99.18
COG0603		222	Predicted PP-loop superfamily ATPase [General func	99.17
COG0301		383	ThiI Thiamine biosynthesis ATP pyrophosphatase [Co	99.15
PRK05370		447	argininosuccinate synthase; Validated	99.15
TIGR02057		226	PAPS_reductase phosphoadenosine phosphosulfate red	99.12
KOG2805\|consensus		377		99.08
TIGR00434		212	cysH phosophoadenylyl-sulfate reductase (thioredox	99.05
PF02540		242	NAD_synthase: NAD synthase; InterPro: IPR022310 NA	99.04
COG0137		403	ArgG Argininosuccinate synthase [Amino acid transp	99.01
TIGR00269		104	conserved hypothetical protein TIGR00269.	99.0
cd01994		194	Alpha_ANH_like_IV This is a subfamily of Adenine n	98.99
PRK08557		417	hypothetical protein; Provisional	98.95
PTZ00323		294	NAD+ synthase; Provisional	98.93
PRK02628		679	nadE NAD synthetase; Reviewed	98.9
PRK13794		479	hypothetical protein; Provisional	98.9
TIGR03679		218	arCOG00187 arCOG00187 universal archaeal metal-bin	98.88
PRK13795		636	hypothetical protein; Provisional	98.87
COG2117		198	Predicted subunit of tRNA(5-methylaminomethyl-2-th	98.86
COG0175		261	CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotr	98.83
TIGR03183		447	DNA_S_dndC putative sulfurtransferase DndC. Member	98.79
PRK06850		507	hypothetical protein; Provisional	98.77
PF00764		388	Arginosuc_synth: Arginosuccinate synthase; InterPr	98.75
PRK00876		326	nadE NAD synthetase; Reviewed	98.74
PRK13981		540	NAD synthetase; Provisional	98.64
PRK00768		268	nadE NAD synthetase; Reviewed	98.58
COG0171		268	NadE NAD synthase [Coenzyme metabolism]	98.42
KOG1622\|consensus		552		98.41
cd01984		86	AANH_like Adenine nucleotide alpha hydrolases supe	98.37
TIGR00289		222	conserved hypothetical protein TIGR00289. Homologo	98.23
cd01991		269	Asn_Synthase_B_C The C-terminal domain of Asparagi	98.23
TIGR00424		463	APS_reduc 5'-adenylylsulfate reductase, thioredoxi	98.2
COG3969		407	Predicted phosphoadenosine phosphosulfate sulfotra	98.17
PF00733		255	Asn_synthase: Asparagine synthase; InterPro: IPR00	98.13
TIGR02055		191	APS_reductase thioredoxin-dependent adenylylsulfat	98.11
KOG1706\|consensus		412		98.08
TIGR01536		467	asn_synth_AEB asparagine synthase (glutamine-hydro	98.0
TIGR00290		223	MJ0570_dom MJ0570-related uncharacterized domain.	97.89
PLN02309		457	5'-adenylylsulfate reductase	97.82
COG1365		255	Predicted ATPase (PP-loop superfamily) [General fu	97.82
PF01902		218	ATP_bind_4: ATP-binding region; InterPro: IPR00276	97.66
COG2102		223	Predicted ATPases of PP-loop superfamily [General	97.31
PLN02549		578	asparagine synthase (glutamine-hydrolyzing)	97.03
PLN02339		700	NAD+ synthase (glutamine-hydrolysing)	96.79
PTZ00077		586	asparagine synthetase-like protein; Provisional	96.79
PRK09431		554	asnB asparagine synthetase B; Provisional	96.53
TIGR03108		628	eps_aminotran_1 exosortase 1 system-associated ami	96.27
TIGR03104		589	trio_amidotrans asparagine synthase family amidotr	96.08
COG0367		542	AsnB Asparagine synthase (glutamine-hydrolyzing) [	95.83
KOG0571\|consensus		543		95.13
PF02677		176	DUF208: Uncharacterized BCR, COG1636; InterPro: IP	95.03
cd01987		124	USP_OKCHK USP domain is located between the N-term	94.89
PRK10490		895	sensor protein KdpD; Provisional	94.28
cd01989		146	STK_N The N-terminal domain of Eukaryotic Serine T	92.9
cd00293		130	USP_Like Usp: Universal stress protein family. The	91.76
KOG0189\|consensus		261		91.59
KOG0573\|consensus		520		91.39
cd01988		132	Na_H_Antiporter_C The C-terminal domain of a subfa	90.59
PRK09982		142	universal stress protein UspD; Provisional	90.33
COG2205		890	KdpD Osmosensitive K+ channel histidine kinase [Si	89.86
PRK15118		144	universal stress global response regulator UspA; P	86.79
COG1636		204	Uncharacterized protein conserved in bacteria [Fun	84.36
cd05565		99	PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of en	80.8

>KOG2594\|consensus	Back alignment and domain information

Probab=100.00  E-value=1.8e-42  Score=344.76  Aligned_cols=314  Identities=30%  Similarity=0.473  Sum_probs=227.8

Q ss_pred             cCccccccCCC-CceEEecCCcccchHHHHHHHHHHHHH--HHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhc
Q psy3867          60 ADKLCPRCNTN-NGEVVLRLKDIYCKACLLQYLNHKFRA--ALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSS  136 (521)
Q Consensus        60 ~~~~C~kCk~~-~a~i~~r~~~~~Cr~CF~~~i~~Kfr~--~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~  136 (521)
                      .+..|+||... ....+...+++||.+||.+++++|||+  +....++.++.+.+|+++|||.+|+|||++++-++.+..
T Consensus        11 ~~s~c~KCd~na~~~~v~~~k~~~C~eCFv~~v~~KfR~qla~~~~~~~~~sk~vLlv~~G~ssSlvlLd~vh~~l~q~k   90 (396)
T KOG2594|consen   11 HESACVKCDKNANMTTVDGKKDAFCDECFVNNVRNKFRLQLAVPSHKMGTPSKNVLLVFDGGSSSLVLLDFVHLALKQLK   90 (396)
T ss_pred             CcccccccccCCCcccccccchhHHHHHHHHHHHHHHHHHhhcchhhcCCcccceEEEecCCcchHhHHHHHHHHHHHhh
Confidence            35789999653 444455667899999999999999999  666678888999999999999999999999996677655


Q ss_pred             cccc--ceeEEEE-EEeCCCCCccChHHHHHHHHHHHHHhccCCEEE--EEcccccC-CchhhhhhcccCCchhhhchhh
Q psy3867         137 HKRI--LFSVCAI-YIDDGSISQVSISERKANNAQIATAMKYFDSYF--TCLEQALE-PDNMKLYTDVAELPLEQFAKDS  210 (521)
Q Consensus       137 ~kr~--~f~v~~v-~ID~g~~~~~s~~e~~~~l~~v~~~~eg~p~~i--v~l~evf~-~~~~~~~~~~~~~~~~~~~~~~  210 (521)
                      .+++  +|.+.++ +.-++.   .+....+...+.+.+..+..+|.|  +...+.+. ...........++    ..+.+
T Consensus        91 ~~~~~~~~tv~v~~~~~~~~---~~~~v~e~lq~l~~~~~~~~~~~V~~la~~~~~~~~~~~~~~~~n~El----~ak~~  163 (396)
T KOG2594|consen   91 NKRLRRDFTVLVLVVFQEFT---DSTAVFEALQELIIDNIEWVRYVVSCLAPPEKDNHVVPVESINGNDEL----IAKDR  163 (396)
T ss_pred             hhhcCcCCceEEEEEEEecc---chHHHHHHHHHHHHhhccccceEEEecCchHhhcCcccccccCCCcee----ecchh
Confidence            5544  4443333 222322   121212211122222222444444  22232222 1110000001111    11112


Q ss_pred             hhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcCCCeEEeccCcchhHHHHHHHHhcCCCCCCCCCCcCCCCC-CCCee
Q psy3867         211 EINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLNCTKIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDR-TGDII  289 (521)
Q Consensus       211 ~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg~~~V~tGh~~dDlA~~~L~nl~~GrG~~l~~~~~~~d~~-~~~v~  289 (521)
                      ++ .+.+++++.+ |+|++.++|.++|.++|.++||++|++||+++|+|..+|+.+++|||.++++++...|.+ .++++
T Consensus       164 kl-~~~~sv~~~s-rqDLl~~lk~kll~~vA~~~g~~~i~~g~~~t~la~~vlt~v~~GRG~sis~~v~~~d~r~~~d~~  241 (396)
T KOG2594|consen  164 KL-KLSDSVPDDS-RQDLLLHLKMKLLQKVAAENGYNRIVLGDSTTDLASHVLTAVVKGRGGSISTDVQVVDKRPKGDVK  241 (396)
T ss_pred             hc-ccccccccch-HHHHHHHHHHHHHHHHHHHcCCCEEEecCchhHHHHHHHHHHHhccCccceehhhhhccccCCCce
Confidence            22 2334666665 999999999999999999999999999999999999999999999999999999988776 46899


Q ss_pred             eeecCCCCCHHHHHHHHHHCCCCceecC-CCCCC-CCChhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhhhhhcCcc
Q psy3867         290 TLRPLRDFSSKEVIYYNIFNDLSPVHVP-SLATL-ADPLASLQKAAESFVTDLQTNFPSTVSTVFRTADKLSLDLTSMNV  367 (521)
Q Consensus       290 iiRPLrd~~kkEI~~Ya~~~~L~~~~~~-~~~~~-~~~~~Si~~l~~~fI~~Le~~~Pstv~tV~rT~~KL~~~~~~~~~  367 (521)
                      ++|||+|+.+.||..|+...|+++.+.. ...+. .....+||.++..|+..||.+||++++||+||++||..+...+ .
T Consensus       242 llrPLrDl~~~Ei~~y~~l~~l~~~~c~~~~k~~~~~~q~sI~~lT~afva~Lqn~f~S~vsTV~rTaaKl~~~s~s~-~  320 (396)
T KOG2594|consen  242 LLRPLRDLLSLEITSYCLLDGLAYYFCQGRRKTVELASQCSINDLTSAFVALLQNEFPSTVSTVVRTAAKLTVPSFSM-T  320 (396)
T ss_pred             eehhHHHHHHHHHHHHHHhhcCCchhhhHHHhhccchhhccHHHHHHHHHHHHHhhcchHHHHHHhhhhhhcCCCCCC-C
Confidence            9999999999999999999999964421 11110 1245799999999999999999999999999999999874444 5


Q ss_pred             cccccccccccCCCcC
Q psy3867         368 NNTCLLCKAPLDTRAD  383 (521)
Q Consensus       368 ~~~C~lC~~~ld~~~~  383 (521)
                      +..|.+|.+|++.+++
T Consensus       321 es~C~iCn~~l~~~~s  336 (396)
T KOG2594|consen  321 ESFCPICNSPLNRSDS  336 (396)
T ss_pred             cccccccCCcccCCch
Confidence            8899999999998874

>PRK10696 tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional	Back alignment and domain information

>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]	Back alignment and domain information

>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional	Back alignment and domain information

>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain	Back alignment and domain information

>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	Back alignment and domain information

>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]	Back alignment and domain information

>KOG2840\|consensus	Back alignment and domain information

>PRK08349 hypothetical protein; Validated	Back alignment and domain information

>PF10288 DUF2392: Protein of unknown function (DUF2392); InterPro: IPR019407 Cytoplasmic thiouridylase is a highly conserved complex responsible for the 2-thiolation of cytosolic tRNAs []	Back alignment and domain information

>PRK00143 mnmA tRNA-specific 2-thiouridylase MnmA; Reviewed	Back alignment and domain information

>cd01997 GMP_synthase_C The C-terminal domain of GMP synthetase	Back alignment and domain information

>TIGR00884 guaA_Cterm GMP synthase (glutamine-hydrolyzing), C-terminal domain or B subunit	Back alignment and domain information

>PRK00074 guaA GMP synthase; Reviewed	Back alignment and domain information

>PRK00919 GMP synthase subunit B; Validated	Back alignment and domain information

>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway	Back alignment and domain information

>cd01990 Alpha_ANH_like_I This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	Back alignment and domain information

>PRK14665 mnmA tRNA-specific 2-thiouridylase MnmA; Provisional	Back alignment and domain information

>cd01998 tRNA_Me_trans tRNA methyl transferase	Back alignment and domain information

>TIGR00268 conserved hypothetical protein TIGR00268	Back alignment and domain information

>PRK08384 thiamine biosynthesis protein ThiI; Provisional	Back alignment and domain information

>PRK05253 sulfate adenylyltransferase subunit 2; Provisional	Back alignment and domain information

>TIGR00420 trmU tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	Back alignment and domain information

>PRK14664 tRNA-specific 2-thiouridylase MnmA; Provisional	Back alignment and domain information

>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase	Back alignment and domain information

>PRK14561 hypothetical protein; Provisional	Back alignment and domain information

>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI	Back alignment and domain information

>PRK13820 argininosuccinate synthase; Provisional	Back alignment and domain information

>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional	Back alignment and domain information

>TIGR02039 CysD sulfate adenylyltransferase, small subunit	Back alignment and domain information

>TIGR00552 nadE NAD+ synthetase	Back alignment and domain information

>PF03054 tRNA_Me_trans: tRNA methyl transferase; InterPro: IPR004506 tRNA-specific 2-thiouridylase catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34	Back alignment and domain information

>COG1606 ATP-utilizing enzymes of the PP-loop superfamily [General function prediction only]	Back alignment and domain information

>COG0482 TrmU Predicted tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>cd01995 ExsB ExsB is a transcription regulator related protein	Back alignment and domain information

>PRK08576 hypothetical protein; Provisional	Back alignment and domain information

>PRK01565 thiamine biosynthesis protein ThiI; Provisional	Back alignment and domain information

>TIGR00364 exsB protein	Back alignment and domain information

>PRK00509 argininosuccinate synthase; Provisional	Back alignment and domain information

>TIGR00032 argG argininosuccinate synthase	Back alignment and domain information

>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell	Back alignment and domain information

>PRK02090 phosphoadenosine phosphosulfate reductase; Provisional	Back alignment and domain information

>PRK12563 sulfate adenylyltransferase subunit 2; Provisional	Back alignment and domain information

>PLN00200 argininosuccinate synthase; Provisional	Back alignment and domain information

>cd01999 Argininosuccinate_Synthase Argininosuccinate synthase	Back alignment and domain information

>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD)	Back alignment and domain information

>PLN02347 GMP synthetase	Back alignment and domain information

>PRK13980 NAD synthetase; Provisional	Back alignment and domain information

>PRK11106 queuosine biosynthesis protein QueC; Provisional	Back alignment and domain information

>COG0519 GuaA GMP synthase, PP-ATPase domain/subunit [Nucleotide transport and metabolism]	Back alignment and domain information

>TIGR03573 WbuX N-acetyl sugar amidotransferase	Back alignment and domain information

>PF06508 QueC: Queuosine biosynthesis protein QueC; InterPro: IPR018317 This protein family is represented by a single member in nearly every completed large (> 1000 genes) prokaryotic genome	Back alignment and domain information

>cd01986 Alpha_ANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases and ATP sulphurylases	Back alignment and domain information

>PRK04527 argininosuccinate synthase; Provisional	Back alignment and domain information

>cd01996 Alpha_ANH_like_III This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	Back alignment and domain information

>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase	Back alignment and domain information

>COG0603 Predicted PP-loop superfamily ATPase [General function prediction only]	Back alignment and domain information

>COG0301 ThiI Thiamine biosynthesis ATP pyrophosphatase [Coenzyme metabolism]	Back alignment and domain information

>PRK05370 argininosuccinate synthase; Validated	Back alignment and domain information

>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent	Back alignment and domain information

>KOG2805\|consensus	Back alignment and domain information

>TIGR00434 cysH phosophoadenylyl-sulfate reductase (thioredoxin)	Back alignment and domain information

>PF02540 NAD_synthase: NAD synthase; InterPro: IPR022310 NAD+ synthase (6	Back alignment and domain information

>COG0137 ArgG Argininosuccinate synthase [Amino acid transport and metabolism]	Back alignment and domain information

>TIGR00269 conserved hypothetical protein TIGR00269	Back alignment and domain information

>cd01994 Alpha_ANH_like_IV This is a subfamily of Adenine nucleotide alpha hydrolases superfamily	Back alignment and domain information

>PRK08557 hypothetical protein; Provisional	Back alignment and domain information

>PTZ00323 NAD+ synthase; Provisional	Back alignment and domain information

>PRK02628 nadE NAD synthetase; Reviewed	Back alignment and domain information

>PRK13794 hypothetical protein; Provisional	Back alignment and domain information

>TIGR03679 arCOG00187 arCOG00187 universal archaeal metal-binding-domain/4Fe-4S-binding-domain containing ABC transporter, ATP-binding protein	Back alignment and domain information

>PRK13795 hypothetical protein; Provisional	Back alignment and domain information

>COG2117 Predicted subunit of tRNA(5-methylaminomethyl-2-thiouridylate) methyltransferase, contains the PP-loop ATPase domain [Translation, ribosomal structure and biogenesis]	Back alignment and domain information

>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]	Back alignment and domain information

>TIGR03183 DNA_S_dndC putative sulfurtransferase DndC	Back alignment and domain information

>PRK06850 hypothetical protein; Provisional	Back alignment and domain information

>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6	Back alignment and domain information

>PRK00876 nadE NAD synthetase; Reviewed	Back alignment and domain information

>PRK13981 NAD synthetase; Provisional	Back alignment and domain information

>PRK00768 nadE NAD synthetase; Reviewed	Back alignment and domain information

>COG0171 NadE NAD synthase [Coenzyme metabolism]	Back alignment and domain information

>KOG1622\|consensus	Back alignment and domain information

>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF)	Back alignment and domain information

>TIGR00289 conserved hypothetical protein TIGR00289	Back alignment and domain information

>cd01991 Asn_Synthase_B_C The C-terminal domain of Asparagine Synthase B	Back alignment and domain information

>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent	Back alignment and domain information

>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]	Back alignment and domain information

>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO)	Back alignment and domain information

>TIGR02055 APS_reductase thioredoxin-dependent adenylylsulfate APS reductase	Back alignment and domain information

>KOG1706\|consensus	Back alignment and domain information

>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing)	Back alignment and domain information

>TIGR00290 MJ0570_dom MJ0570-related uncharacterized domain	Back alignment and domain information

>PLN02309 5'-adenylylsulfate reductase	Back alignment and domain information

>COG1365 Predicted ATPase (PP-loop superfamily) [General function prediction only]	Back alignment and domain information

>PF01902 ATP_bind_4: ATP-binding region; InterPro: IPR002761 This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N-terminal	Back alignment and domain information

>COG2102 Predicted ATPases of PP-loop superfamily [General function prediction only]	Back alignment and domain information

>PLN02549 asparagine synthase (glutamine-hydrolyzing)	Back alignment and domain information

>PLN02339 NAD+ synthase (glutamine-hydrolysing)	Back alignment and domain information

>PTZ00077 asparagine synthetase-like protein; Provisional	Back alignment and domain information

>PRK09431 asnB asparagine synthetase B; Provisional	Back alignment and domain information

>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1	Back alignment and domain information

>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase	Back alignment and domain information

>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]	Back alignment and domain information

>KOG0571\|consensus	Back alignment and domain information

>PF02677 DUF208: Uncharacterized BCR, COG1636; InterPro: IPR003828 This entry describes proteins of unknown function	Back alignment and domain information

>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family	Back alignment and domain information

>PRK10490 sensor protein KdpD; Provisional	Back alignment and domain information

>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases	Back alignment and domain information

>cd00293 USP_Like Usp: Universal stress protein family	Back alignment and domain information

>KOG0189\|consensus	Back alignment and domain information

>KOG0573\|consensus	Back alignment and domain information

>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea	Back alignment and domain information

>PRK09982 universal stress protein UspD; Provisional	Back alignment and domain information

>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]	Back alignment and domain information

>PRK15118 universal stress global response regulator UspA; Provisional	Back alignment and domain information

>COG1636 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		521
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-06
1wy5_A		317	TILS, hypothetical UPF0072 protein AQ_1887; N-type	7e-06
3a2k_A		464	TRNA(Ile)-lysidine synthase; ligase, pseudo-knot,	2e-05
1ni5_A		433	Putative cell cycle protein MESJ; structural genom	2e-04
3k1f_M		197	Transcription initiation factor IIB; RNA polymeras	9e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 53.7 bits (128), Expect = 1e-07
 Identities = 46/433 (10%), Positives = 99/433 (22%), Gaps = 165/433 (38%)

Query: 188 EPDNMKL-YTDVAELPLEQFAKD----------------SEINKMFQTVTTLSSRQYLLQ 230
           E    +  Y D+  +  + F  +                 EI+ +  +   +S    L  
Sbjct: 10  ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFW 69

Query: 231 TLRQNLLLQAAKKLNCTKIFTAET-QTD---LATKIIANISLGKGAHVPLDVGFSDDRTG 286
           TL         K+    + F  E  + +   L + I                     +T 
Sbjct: 70  TLLS-------KQEEMVQKFVEEVLRINYKFLMSPI---------------------KTE 101

Query: 287 DIITLRPLRDFSSKEVIYYNIFNDLSPVHVPSLATLADPLASLQKAA-----ESFVT--- 338
                   R +  +    YN     +  +V  L     P   L++A         V    
Sbjct: 102 QRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL----QPYLKLRQALLELRPAKNVLIDG 157

Query: 339 -----------------DLQTNFPS-----TVSTVFRTADKLSLDLTSMNVNNTCLLCKA 376
                             +Q           +         L        +         
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL------EMLQKLLYQIDP 211

Query: 377 PLDTRADLASSSMGATRFSRYVSNATREQLSHVIISSESP------------------DH 418
              +R+D +S+        +   ++ + +L  ++ S                      + 
Sbjct: 212 NWTSRSDHSSN-------IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL 264

Query: 419 ASK--VTT---DVNQTVGSQDIPEKSVNGS---------------------EDIPNQIVN 452
           + K  +TT    V   + +      S++                       +D+P +++ 
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLT 324

Query: 453 GMQYTP------NEKVSRTEDNEGPDNLQRSLCYACQYVVKDMTSDKDIGEGILKKCLQE 506
                P       E +      +G                  +T+       I++  L  
Sbjct: 325 TN---PRRLSIIAESIR-----DGLATWDNWK----HVNCDKLTT-------IIESSLNV 365

Query: 507 KSLNEMEDQIRDF 519
               E        
Sbjct: 366 LEPAEYRKMFDRL 378

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A* Length = 317	Back alignment and structure

>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus} Length = 464	Back alignment and structure

>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1 Length = 433	Back alignment and structure

>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		521
1wy5_A		317	TILS, hypothetical UPF0072 protein AQ_1887; N-type	99.97
3a2k_A		464	TRNA(Ile)-lysidine synthase; ligase, pseudo-knot,	99.97
1ni5_A		433	Putative cell cycle protein MESJ; structural genom	99.95
2dpl_A		308	GMP synthetase, GMP synthase [glutamine-hydrolyzin	99.84
3tqi_A		527	GMP synthase [glutamine-hydrolyzing]; ligase; 2.84	99.78
2der_A		380	TRNA-specific 2-thiouridylase MNMA; protein-RNA co	99.76
3k32_A		203	Uncharacterized protein MJ0690; predicted subunit	99.75
2hma_A		376	Probable tRNA (5-methylaminomethyl-2-thiouridylat	99.75
1sur_A		215	PAPS reductase; assimilatory sulfate reduction, 3-	99.73
2ywb_A		503	GMP synthase [glutamine-hydrolyzing]; GMP syntheta	99.73
3bl5_A		219	Queuosine biosynthesis protein QUEC; PREQ1 biosynt	99.71
2c5s_A		413	THII, probable thiamine biosynthesis protein THII;	99.7
3uow_A		556	GMP synthetase; structural genomics consortium, SG	99.67
1zun_A		325	Sulfate adenylyltransferase subunit 2; beta barrel	99.66
1gpm_A		525	GMP synthetase, XMP aminase; class I glutamine ami	99.65
1k92_A		455	Argininosuccinate synthase, argininosuccinate SY;	99.62
2pg3_A		232	Queuosine biosynthesis protein QUEC; YP_049261.1,	99.62
2o8v_A		252	Phosphoadenosine phosphosulfate reductase; disulfi	99.62
2e18_A		257	NH(3)-dependent NAD(+) synthetase; ligase, structu	99.61
3p52_A		249	NH(3)-dependent NAD(+) synthetase; structural geno	99.61
1kor_A		400	Argininosuccinate synthetase; ligase, riken struct	99.61
1xng_A		268	NH(3)-dependent NAD(+) synthetase; amidotransferas	99.56
2oq2_A		261	Phosphoadenosine phosphosulfate reductase; sulfate	99.55
2nz2_A		413	Argininosuccinate synthase; amino-acid biosynthesi	99.55
2vxo_A		697	GMP synthase [glutamine-hydrolyzing]; proto-oncoge	99.55
3fiu_A		249	NH(3)-dependent NAD(+) synthetase; rossman fold, a	99.54
1vl2_A		421	Argininosuccinate synthase; TM1780, structural gen	99.46
2wsi_A		306	FAD synthetase; transferase, nucleotidyltransferas	99.43
2goy_A		275	Adenosine phosphosulfate reductase; iron sulfur cl	99.38
1kqp_A		271	NAD+ synthase, NH(3)-dependent NAD(+) synthetase,	99.24
1wxi_A		275	NH(3)-dependent NAD(+) synthetase; NADE, E.coli, l	99.2
3q4g_A		279	NH(3)-dependent NAD(+) synthetase; structural geno	99.17
3dpi_A		285	NAD+ synthetase; ssgcid, decode, structural genomi	99.16
1vbk_A		307	Hypothetical protein PH1313; structural genomics,	99.14
3n05_A		590	NH(3)-dependent NAD(+) synthetase; ligase, structu	99.11
3fwk_A		308	FMN adenylyltransferase; FAD biosynthesis, alpha/b	98.84
3ilv_A		634	Glutamine-dependent NAD(+) synthetase; protein str	98.71
3sdb_A		680	Glutamine-dependent NAD(+) synthetase; glutamine-a	98.61
3rjz_A		237	N-type ATP pyrophosphatase superfamily; structural	98.51
4f4h_A		565	Glutamine dependent NAD+ synthetase; structural ge	98.07
1ct9_A		553	Asparagine synthetase B; amidotransferase, substra	97.86
1q15_A		503	CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS,	97.71
1jgt_A		513	Beta-lactam synthetase; asparagine synthetase, cla	97.69
3hgm_A		147	Universal stress protein TEAD; rossman fold, signa	91.3
2dum_A		170	Hypothetical protein PH0823; conserved hypothetica	90.06
3s3t_A		146	Nucleotide-binding protein, universal stress PROT	89.77
3idf_A		138	USP-like protein; universal, stress, PSI, MCSG, st	89.32
1tq8_A		163	Hypothetical protein RV1636; MTCY01B2.28, structur	89.24
3tnj_A		150	Universal stress protein (USP); structural genomic	88.69
3dlo_A		155	Universal stress protein; unknown function, struct	87.99
1mjh_A		162	Protein (ATP-binding domain of protein MJ0577); hy	87.85
2z08_A		137	Universal stress protein family; uncharacterized c	86.38
3fdx_A		143	Putative filament protein / universal stress PROT;	85.95
3loq_A		294	Universal stress protein; structural genomics, PSI	85.43
3fg9_A		156	Protein of universal stress protein USPA family; A	83.48
2gm3_A		175	Unknown protein; AT3G01520, putative ethylene-resp	82.83
1jmv_A		141	USPA, universal stress protein A; chaperone; 1.85A	81.54

>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*	Back alignment and structure

Probab=99.97  E-value=9.2e-31  Score=268.11  Aligned_cols=229  Identities=17%  Similarity=0.132  Sum_probs=188.6

Q ss_pred             HHHHHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhccccccee-EEEEEEeCCCCCccChHHHHH
Q psy3867          86 CLLQYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFS-VCAIYIDDGSISQVSISERKA  164 (521)
Q Consensus        86 CF~~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f~-v~~v~ID~g~~~~~s~~e~~~  164 (521)
                      |....+.++|+++|.+++++.++++|+||+|||+||++||+++.+..     ++.+++ +.++|||+|.+ +    +..+
T Consensus         2 ~~~~~~~~~~~~~i~~~~l~~~~~~vlva~SGG~DS~~Ll~ll~~~~-----~~~g~~~v~av~vd~g~r-~----~s~~   71 (317)
T 1wy5_A            2 NPESRVIRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLK-----NYFSLKEVALAHFNHMLR-E----SAER   71 (317)
T ss_dssp             CHHHHHHHHHHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHHST-----TTTTCSEEEEEEEECCSS-T----HHHH
T ss_pred             ccHHHHHHHHHHHHHHcCCCCCCCEEEEEecchHHHHHHHHHHHHHH-----HHcCCCEEEEEEEECCCC-c----ccHH
Confidence            66778899999999999999999999999999999999999997621     235788 99999999974 1    2234


Q ss_pred             HHHHHHHHhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHH
Q psy3867         165 NNAQIATAMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAK  242 (521)
Q Consensus       165 ~l~~v~~~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~  242 (521)
                      +.+.++++|+  |+|+++++++.       ..+....                      ..+.|..++.+|+..|.++|+
T Consensus        72 ~~~~v~~~a~~lgi~~~v~~~~~-------~~~~~~~----------------------~~~~e~~ar~~Ry~~l~~~a~  122 (317)
T 1wy5_A           72 DEEFCKEFAKERNMKIFVGKEDV-------RAFAKEN----------------------RMSLEEAGRFLRYKFLKEILE  122 (317)
T ss_dssp             HHHHHHHHHHHHTCCEEEEECCH-------HHHHHHT----------------------TCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcEEEEEEec-------hhhhccC----------------------CCCHHHHHHHHHHHHHHHHHH
Confidence            5778999998  99999998762       1111000                      124678889999999999999


Q ss_pred             hcCCCeEEeccCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCceecCCCCCC
Q psy3867         243 KLNCTKIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPVHVPSLATL  322 (521)
Q Consensus       243 ~lg~~~V~tGh~~dDlA~~~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~~~~~~~~~  322 (521)
                      ++|+++|++|||+||.++++|+++.+|.|.  .+..++... .  ..++|||.+++++||..|++..|+|++.++|+.. 
T Consensus       123 ~~g~~~i~~Gh~~dD~~Et~l~~l~rg~g~--~gl~~~~~~-~--~~iirPLl~~~k~eI~~~~~~~gl~~~~d~sn~~-  196 (317)
T 1wy5_A          123 SEGFDCIATAHHLNDLLETSLLFFTRGTGL--DGLIGFLPK-E--EVIRRPLYYVKRSEIEEYAKFKGLRWVEDETNYE-  196 (317)
T ss_dssp             HTTCSEEECCCCHHHHHHHHHHHHHHCCCH--HHHHCSCSE-E--TTEECTTTTCCHHHHHHHHHHTTCCCCCCGGGGT-
T ss_pred             HcCCCEEEEeCchhHHHHHHHHHHHhCCCc--ccccCCCCC-C--CeEECCCccCCHHHHHHHHHHcCCCeeECCCCCC-
Confidence            999999999999999999999999999872  112222111 1  2689999999999999999999999999998863 


Q ss_pred             CCChhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhhh
Q psy3867         323 ADPLASLQKAAESFVTDLQTNFPSTVSTVFRTADKLSLD  361 (521)
Q Consensus       323 ~~~~~Si~~l~~~fI~~Le~~~Pstv~tV~rT~~KL~~~  361 (521)
                        ..+.++++++++++.|++.+|++..+++|+++++...
T Consensus       197 --~~~~Rn~iR~~~lp~L~~~~p~~~~~l~~~~~~~~~~  233 (317)
T 1wy5_A          197 --VSIPRNRIRHRVIPELKRINENLEDTFLKMVKVLRAE  233 (317)
T ss_dssp             --CCHHHHHHHHTHHHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred             --CccHHHHHHHHHHHHHHHHCccHHHHHHHHHHHHHHH
Confidence              4578888888999999999999999999999999865

PyMOL of 1wy5

>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}	Back alignment and structure

>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1	Back alignment and structure

>2dpl_A GMP synthetase, GMP synthase [glutamine-hydrolyzing] subunit B; pyrococcus horikoshii OT3, structural genomics, NPPSFA; 1.43A {Pyrococcus horikoshii} PDB: 2z0c_A 3a4i_A	Back alignment and structure

>3tqi_A GMP synthase [glutamine-hydrolyzing]; ligase; 2.84A {Coxiella burnetii}	Back alignment and structure

>2der_A TRNA-specific 2-thiouridylase MNMA; protein-RNA complex, transferase/RNA complex; 3.10A {Escherichia coli} PDB: 2det_A 2deu_A*	Back alignment and structure

>3k32_A Uncharacterized protein MJ0690; predicted subunit of tRNA methyltransferase, methanocaldococcus jannaschii DSM , PSI- 2; 2.50A {Methanocaldococcus jannaschii}	Back alignment and structure

>2hma_A Probable tRNA (5-methylaminomethyl-2-thiouridylat methyltransferase; alpha-beta, beta barrel, structural genomics, PSI-2; HET: MSE SAM; 2.41A {Streptococcus pneumoniae}	Back alignment and structure

>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2	Back alignment and structure

>2ywb_A GMP synthase [glutamine-hydrolyzing]; GMP synthetase, XMP binding, ATP binding, purine nucleotide biosynthetic pathway, structural genomics; 2.10A {Thermus thermophilus} PDB: 2ywc_A*	Back alignment and structure

>3bl5_A Queuosine biosynthesis protein QUEC; PREQ1 biosynthesis, RNA modification, tRNA, hydrolase; 2.95A {Bacillus subtilis}	Back alignment and structure

>2c5s_A THII, probable thiamine biosynthesis protein THII; RNA-binding protein, RNA binding protein, tRNA modification, 4-thiouridine synthase; HET: AMP; 2.5A {Bacillus anthracis} SCOP: c.26.2.6 d.308.1.1	Back alignment and structure

>3uow_A GMP synthetase; structural genomics consortium, SGC, purine nucleotide biosy process, ligase; HET: XMP; 2.72A {Plasmodium falciparum}	Back alignment and structure

>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2	Back alignment and structure

>1gpm_A GMP synthetase, XMP aminase; class I glutamine amidotransferase, N-type ATP pyrophosphata transferase (glutamine amidotransferase); HET: AMP CIT; 2.20A {Escherichia coli} SCOP: c.23.16.1 c.26.2.1 d.52.2.1	Back alignment and structure

>1k92_A Argininosuccinate synthase, argininosuccinate SY; N-type ATP pyrophosphatase, ligase; 1.60A {Escherichia coli} SCOP: c.26.2.1 d.210.1.1 PDB: 1k97_A* 1kp2_A* 1kp3_A*	Back alignment and structure

>2pg3_A Queuosine biosynthesis protein QUEC; YP_049261.1, hypothetical protein, structural genomics, JOIN for structural genomics; 2.40A {Pectobacterium atrosepticum SCRI1043} SCOP: c.26.2.1	Back alignment and structure

>2o8v_A Phosphoadenosine phosphosulfate reductase; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}	Back alignment and structure

>2e18_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, NPPSFA, national project on Pro structural and functional analyses; 2.10A {Pyrococcus horikoshii}	Back alignment and structure

>3p52_A NH(3)-dependent NAD(+) synthetase; structural genomics, center for structural genomics of infec diseases, NADE, CSGI; 2.74A {Campylobacter jejuni} SCOP: c.26.2.0	Back alignment and structure

>1kor_A Argininosuccinate synthetase; ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: ANP ARG; 1.95A {Thermus thermophilus} SCOP: c.26.2.1 d.210.1.1 PDB: 1j1z_A* 1j21_A* 1kh1_A 1kh2_A* 1kh3_A* 1j20_A*	Back alignment and structure

>1xng_A NH(3)-dependent NAD(+) synthetase; amidotransferase, ligase; HET: DND ATP; 1.70A {Helicobacter pylori} SCOP: c.26.2.1 PDB: 1xnh_A	Back alignment and structure

>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}	Back alignment and structure

>2nz2_A Argininosuccinate synthase; amino-acid biosynthesis, aspartate, citrulline, ST genomics, structural genomics consortium, SGC, ligase; HET: CIR; 2.40A {Homo sapiens}	Back alignment and structure

>2vxo_A GMP synthase [glutamine-hydrolyzing]; proto-oncogene, phosphoprotein, GMP synthetase, guanine monophosphate synthetase, chromosomal rearrangement; HET: XMP; 2.5A {Homo sapiens}	Back alignment and structure

>3fiu_A NH(3)-dependent NAD(+) synthetase; rossman fold, adenine nucleotide alpha hydrolase-like, ATP- binding, ligase, nucleotide-binding; HET: AMP; 1.85A {Francisella tularensis subsp}	Back alignment and structure

>1vl2_A Argininosuccinate synthase; TM1780, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics, ligase; 1.65A {Thermotoga maritima} SCOP: c.26.2.1 d.210.1.1	Back alignment and structure

>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}	Back alignment and structure

>2goy_A Adenosine phosphosulfate reductase; iron sulfur cluster, nucleotide binding, thiosulfonate intermediate, oxidoreductase; HET: ADX; 2.70A {Pseudomonas aeruginosa}	Back alignment and structure

>1kqp_A NAD+ synthase, NH(3)-dependent NAD(+) synthetase, SPOR; ligase, amidotransferase, ATP pyrophosphatase, NAD-adenylate; HET: ADJ; 1.03A {Bacillus subtilis} SCOP: c.26.2.1 PDB: 1fyd_A* 1ifx_A* 1ee1_A* 1ih8_A* 1nsy_A* 2nsy_A* 2pzb_A 2pza_A* 2pz8_A	Back alignment and structure

>1wxi_A NH(3)-dependent NAD(+) synthetase; NADE, E.coli, ligase; HET: AMP; 1.70A {Escherichia coli} SCOP: c.26.2.1 PDB: 1wxf_A 1wxg_A* 1wxh_A* 1wxe_A* 3hmq_A*	Back alignment and structure

>3q4g_A NH(3)-dependent NAD(+) synthetase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; 2.40A {Vibrio cholerae} SCOP: c.26.2.0	Back alignment and structure

>3dpi_A NAD+ synthetase; ssgcid, decode, structural genomics, PSI, protein structure initiative; 2.20A {Burkholderia pseudomallei} SCOP: c.26.2.0	Back alignment and structure

>1vbk_A Hypothetical protein PH1313; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 1.90A {Pyrococcus horikoshii} SCOP: c.26.2.6 d.308.1.1	Back alignment and structure

>3n05_A NH(3)-dependent NAD(+) synthetase; ligase, structural genomics, protein structure initiative, P nysgrc; 2.35A {Streptomyces avermitilis}	Back alignment and structure

>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*	Back alignment and structure

>3ilv_A Glutamine-dependent NAD(+) synthetase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.79A {Cytophaga hutchinsonii atcc 33406}	Back alignment and structure

>3sdb_A Glutamine-dependent NAD(+) synthetase; glutamine-amidotransferase, glutaminase, glutamine-dependent synthetase, ligase; 2.00A {Mycobacterium tuberculosis} PDB: 3seq_A* 3sez_A* 3szg_A* 3dla_A* 3syt_A*	Back alignment and structure

>3rjz_A N-type ATP pyrophosphatase superfamily; structural genomics, PSI-biology, northeast structural genom consortium, NESG, alpha-beta protein; 2.30A {Pyrococcus furiosus} SCOP: c.26.2.1 PDB: 3h7e_A 3rk0_A* 3rk1_A* 1ru8_A 2d13_A	Back alignment and structure

>4f4h_A Glutamine dependent NAD+ synthetase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ligase; 1.75A {Burkholderia thailandensis}	Back alignment and structure

>1ct9_A Asparagine synthetase B; amidotransferase, substrate channeling, asparagine biosynthesis, ligase; HET: AMP GLN; 2.00A {Escherichia coli} SCOP: c.26.2.1 d.153.1.1	Back alignment and structure

>1q15_A CARA; CMPR, (2S,5S)-5-carboxymethylproline, B-LS, B-lactam synthetase, AS-B, class B asparagine synthetase, AMP-CPP; 2.30A {Pectobacterium carotovorum} SCOP: c.26.2.1 d.153.1.1 PDB: 1q19_A*	Back alignment and structure

>1jgt_A Beta-lactam synthetase; asparagine synthetase, clavulanic AC AMPCPP, CEA, carboxyethylarginine, hydrolase; HET: APC CMA; 1.95A {Streptomyces clavuligerus} SCOP: c.26.2.1 d.153.1.1 PDB: 1m1z_A 1mb9_A* 1mbz_A* 1mc1_A*	Back alignment and structure

>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0	Back alignment and structure

>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}	Back alignment and structure

>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0	Back alignment and structure

>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}	Back alignment and structure

>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4	Back alignment and structure

>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*	Back alignment and structure

>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*	Back alignment and structure

>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4	Back alignment and structure

>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A	Back alignment and structure

>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*	Back alignment and structure

>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}	Back alignment and structure

>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}	Back alignment and structure

>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4	Back alignment and structure

>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		521
d1wy5a1		216	c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aqui	2e-05
d1vl2a1		168	c.26.2.1 (A:2-169) Argininosuccinate synthetase, N	0.001
d1ni5a1		227	c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, T	0.002
d1j20a1		165	c.26.2.1 (A:1-165) Argininosuccinate synthetase, N	0.003

>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]} Length = 216	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: PP-loop ATPase
domain: TilS-like protein Aq 1887
species: Aquifex aeolicus [TaxId: 63363]

 Score = 43.4 bits (101), Expect = 2e-05
 Identities = 16/94 (17%), Positives = 32/94 (34%)

Query: 89  QYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILFSVCAIY 148
             +  K  A     K+   + +VL+AFSG   S+ L  +L +     S K +  +     
Sbjct: 5   SRVIRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHM 64

Query: 149 IDDGSISQVSISERKANNAQIATAMKYFDSYFTC 182
           + + +       +  A    +   +   D     
Sbjct: 65  LRESAERDEEFCKEFAKERNMKIFVGKEDVRAFA 98

PyMOL of d1wy5a1

>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 168	Back information, alignment and structure

>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 227	Back information, alignment and structure

>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 165	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		521
d1wy5a1		216	TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId	99.97
d1ni5a1		227	tRNA-Ile-lysidine synthetase, TilS, N-terminal dom	99.96
d2c5sa1		218	Thiamine biosynthesis protein ThiI, C-terminal dom	99.82
d1k92a1		188	Argininosuccinate synthetase, N-terminal domain {E	99.51
d1gpma1		197	GMP synthetase, central domain {Escherichia coli [	99.42
d1vl2a1		168	Argininosuccinate synthetase, N-terminal domain {T	99.33
d1zuna1		211	Sulfate adenylyltransferase subunit 2, CysD {Pseud	99.27
d1j20a1		165	Argininosuccinate synthetase, N-terminal domain {T	99.26
d1sura_		215	Phosphoadenylyl sulphate (PAPS) reductase {Escheri	99.23
d1xnga1		255	NH3-dependent NAD+-synthetase {Helicobacter pylori	99.14
d2pg3a1		230	Queuosine biosynthesis protein QueC {Erwinia carot	99.07
d1vbka1		132	Hypothetical protein PH1313, C-terminal domain {Ar	98.81
d1kqpa_		271	NH3-dependent NAD+-synthetase {Bacillus subtilis [	98.66
d1wxia1		274	NH3-dependent NAD+-synthetase {Escherichia coli [T	98.57
d2d13a1		226	Hypothetical protein PH1257 {Archaeon Pyrococcus h	98.21
d1jgta1		299	beta-Lactam synthetase {Streptomyces clavuligerus	97.52
d1q15a1		296	beta-Lactam synthetase {Pectobacterium carotovorum	97.46
d1ct9a1		324	Asparagine synthetase B, C-terminal domain {Escher	97.28
d1mjha_		160	"Hypothetical" protein MJ0577 {Archaeon Methanococ	91.11
d1q77a_		138	Hypothetical protein Aq_178 {Aquifex aeolicus [Tax	90.31
d1jmva_		140	Universal stress protein A, UspA {Haemophilus infl	88.59
d2gm3a1		171	Putative ethylene-responsive protein AT3g01520/F4P	85.73
d2z3va1		135	Hypothetical protein TTHA0895 {Thermus thermophilu	84.93
d1tq8a_		147	Hypothetical protein Rv1636 {Mycobacterium tubercu	81.06

>d1wy5a1 c.26.2.5 (A:1-216) TilS-like protein Aq_1887 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Adenine nucleotide alpha hydrolase-like
superfamily: Adenine nucleotide alpha hydrolases-like
family: PP-loop ATPase
domain: TilS-like protein Aq 1887
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.97  E-value=7.7e-31  Score=252.29  Aligned_cols=208  Identities=17%  Similarity=0.162  Sum_probs=167.1

Q ss_pred             HHHHHHHHHHHhhcCCCCCCCeEEEecCCCccHHHHHHHHHHHhhhhcccccce-eEEEEEEeCCCCCccChHHHHHHHH
Q psy3867          89 QYLNHKFRAALGKSKMMRPQDKVLVAFSGSHSSMALLHLLQEGMQLSSHKRILF-SVCAIYIDDGSISQVSISERKANNA  167 (521)
Q Consensus        89 ~~i~~Kfr~~L~k~kli~~~~kVLVa~SGG~DS~vLL~lL~~~l~~~~~kr~~f-~v~~v~ID~g~~~~~s~~e~~~~l~  167 (521)
                      ..+..|+.+.+..++++.+++||+||+|||+||++|||+|.+ +.    ...++ .+.++|||+|.+. .    ..++.+
T Consensus         5 ~~~~~k~~~~~~~~~l~~~~~kv~Va~SGG~DS~~Ll~lL~~-~~----~~~~~~~i~~~~vdh~~r~-~----s~~~~~   74 (216)
T d1wy5a1           5 SRVIRKVLALQNDEKIFSGERRVLIAFSGGVDSVVLTDVLLK-LK----NYFSLKEVALAHFNHMLRE-S----AERDEE   74 (216)
T ss_dssp             HHHHHHHHHHHHHHCSCSSCCEEEEECCSSHHHHHHHHHHHH-ST----TTTTCSEEEEEEEECCSST-H----HHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCCeEEEEeCCcHHHHHHHHHHHH-HH----HhcCCCcEEEEEeeccccc-c----hhhhhh
Confidence            567889999999999999999999999999999999999986 32    12333 6889999999742 2    223457


Q ss_pred             HHHHHhc--cCCEEEEEcccccCCchhhhhhcccCCchhhhchhhhhhhhhhccCCCccHHHHHHHHHHHHHHHHHHhcC
Q psy3867         168 QIATAMK--YFDSYFTCLEQALEPDNMKLYTDVAELPLEQFAKDSEINKMFQTVTTLSSRQYLLQTLRQNLLLQAAKKLN  245 (521)
Q Consensus       168 ~v~~~~e--g~p~~iv~l~evf~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~s~~s~Tsre~l~~~lR~~lL~~~A~~lg  245 (521)
                      .++++|+  |+++++..++..       .....                      ...+.|..++.+|+.+|.++|+++|
T Consensus        75 ~~~~~~~~l~i~~~i~~~~~~-------~~~~~----------------------~~~~~~~~~R~~Ry~~l~~~a~~~~  125 (216)
T d1wy5a1          75 FCKEFAKERNMKIFVGKEDVR-------AFAKE----------------------NRMSLEEAGRFLRYKFLKEILESEG  125 (216)
T ss_dssp             HHHHHHHHHTCCEEEEECCHH-------HHHHH----------------------TTCCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhhhhhhhhccchh-------hhccC----------------------CccchHHHHHHHHHHHhhhhccccc
Confidence            7889988  999999887631       11100                      1123567789999999999999999


Q ss_pred             CCeEEeccCcchhHHHHHHHHhcCCCCCCCCCCcCCCCCCCCeeeeecCCCCCHHHHHHHHHHCCCCceecCCCCCCCCC
Q psy3867         246 CTKIFTAETQTDLATKIIANISLGKGAHVPLDVGFSDDRTGDIITLRPLRDFSSKEVIYYNIFNDLSPVHVPSLATLADP  325 (521)
Q Consensus       246 ~~~V~tGh~~dDlA~~~L~nl~~GrG~~l~~~~~~~d~~~~~v~iiRPLrd~~kkEI~~Ya~~~~L~~~~~~~~~~~~~~  325 (521)
                      +++|+||||+||+++++|+++.+|.|  +.+..++.+   ....++|||..++++||..|++.+|||++.+|||..   .
T Consensus       126 ~~~ia~GH~~dD~~Et~l~~l~rg~~--~~~l~~~~~---~~~~i~RPLl~~~k~eI~~~a~~~~l~~~~D~sN~~---~  197 (216)
T d1wy5a1         126 FDCIATAHHLNDLLETSLLFFTRGTG--LDGLIGFLP---KEEVIRRPLYYVKRSEIEEYAKFKGLRWVEDETNYE---V  197 (216)
T ss_dssp             CSEEECCCCHHHHHHHHHHHHHHCCC--HHHHHCSCS---EETTEECTTTTCCHHHHHHHHHHTTCCCCCCGGGGT---C
T ss_pred             cceeEeeeeccchHHHHHHHhhcCCc--cccccCCCc---ccceecchhhcCCHHHHHHHHHHcCCcEEECcCCCC---C
Confidence            99999999999999999999999876  333334322   234689999999999999999999999999999863   3


Q ss_pred             hhHHHHHHHHHHHHHHHH
Q psy3867         326 LASLQKAAESFVTDLQTN  343 (521)
Q Consensus       326 ~~Si~~l~~~fI~~Le~~  343 (521)
                      .+.++++++++++.|++.
T Consensus       198 ~~~Rn~iR~~l~p~l~~~  215 (216)
T d1wy5a1         198 SIPRNRIRHRVIPELKRI  215 (216)
T ss_dssp             CHHHHHHHHTHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhc
Confidence            578888888999999875

PyMOL of d1wy5a1

>d1ni5a1 c.26.2.5 (A:0-226) tRNA-Ile-lysidine synthetase, TilS, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2c5sa1 c.26.2.6 (A:174-391) Thiamine biosynthesis protein ThiI, C-terminal domain {Bacillus anthracis [TaxId: 1392]}	Back information, alignment and structure

>d1k92a1 c.26.2.1 (A:1-188) Argininosuccinate synthetase, N-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1vl2a1 c.26.2.1 (A:2-169) Argininosuccinate synthetase, N-terminal domain {Thermotoga maritima [TaxId: 2336]}	Back information, alignment and structure

>d1zuna1 c.26.2.2 (A:1-211) Sulfate adenylyltransferase subunit 2, CysD {Pseudomonas syringae pv. tomato [TaxId: 323]}	Back information, alignment and structure

>d1j20a1 c.26.2.1 (A:1-165) Argininosuccinate synthetase, N-terminal domain {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1sura_ c.26.2.2 (A:) Phosphoadenylyl sulphate (PAPS) reductase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1xnga1 c.26.2.1 (A:3-257) NH3-dependent NAD+-synthetase {Helicobacter pylori [TaxId: 210]}	Back information, alignment and structure

>d2pg3a1 c.26.2.1 (A:1-230) Queuosine biosynthesis protein QueC {Erwinia carotovora [TaxId: 554]}	Back information, alignment and structure

>d1vbka1 c.26.2.6 (A:176-307) Hypothetical protein PH1313, C-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1kqpa_ c.26.2.1 (A:) NH3-dependent NAD+-synthetase {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1wxia1 c.26.2.1 (A:2-275) NH3-dependent NAD+-synthetase {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2d13a1 c.26.2.1 (A:2-227) Hypothetical protein PH1257 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}	Back information, alignment and structure

>d1jgta1 c.26.2.1 (A:210-508) beta-Lactam synthetase {Streptomyces clavuligerus [TaxId: 1901]}	Back information, alignment and structure

>d1q15a1 c.26.2.1 (A:206-501) beta-Lactam synthetase {Pectobacterium carotovorum [TaxId: 554]}	Back information, alignment and structure

>d1ct9a1 c.26.2.1 (A:193-516) Asparagine synthetase B, C-terminal domain {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1mjha_ c.26.2.4 (A:) "Hypothetical" protein MJ0577 {Archaeon Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

>d1q77a_ c.26.2.4 (A:) Hypothetical protein Aq_178 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1jmva_ c.26.2.4 (A:) Universal stress protein A, UspA {Haemophilus influenzae [TaxId: 727]}	Back information, alignment and structure

>d2gm3a1 c.26.2.4 (A:5-175) Putative ethylene-responsive protein AT3g01520/F4P13_7 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}	Back information, alignment and structure

>d2z3va1 c.26.2.4 (A:2-136) Hypothetical protein TTHA0895 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1tq8a_ c.26.2.4 (A:) Hypothetical protein Rv1636 {Mycobacterium tuberculosis [TaxId: 1773]}	Back information, alignment and structure