Psyllid ID: psy3876
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 477 | 2.2.26 [Sep-21-2011] | |||||||
| B4KFU7 | 476 | Probable cytosolic Fe-S c | N/A | N/A | 0.983 | 0.985 | 0.527 | 1e-140 | |
| Q16ML2 | 478 | Probable cytosolic Fe-S c | N/A | N/A | 0.987 | 0.985 | 0.529 | 1e-140 | |
| B5DK31 | 477 | Probable cytosolic Fe-S c | yes | N/A | 0.983 | 0.983 | 0.532 | 1e-140 | |
| B4GXC8 | 477 | Probable cytosolic Fe-S c | N/A | N/A | 0.983 | 0.983 | 0.532 | 1e-140 | |
| B4JBE6 | 476 | Probable cytosolic Fe-S c | N/A | N/A | 0.983 | 0.985 | 0.527 | 1e-138 | |
| B4LQR5 | 476 | Probable cytosolic Fe-S c | N/A | N/A | 0.983 | 0.985 | 0.525 | 1e-137 | |
| B0WU52 | 478 | Probable cytosolic Fe-S c | N/A | N/A | 0.987 | 0.985 | 0.525 | 1e-137 | |
| Q7PWB8 | 478 | Probable cytosolic Fe-S c | yes | N/A | 0.987 | 0.985 | 0.518 | 1e-136 | |
| B4MUM8 | 477 | Probable cytosolic Fe-S c | N/A | N/A | 0.985 | 0.985 | 0.518 | 1e-136 | |
| B3N018 | 476 | Probable cytosolic Fe-S c | N/A | N/A | 0.983 | 0.985 | 0.508 | 1e-131 |
| >sp|B4KFU7|NARF_DROMO Probable cytosolic Fe-S cluster assembly factor GI11683 OS=Drosophila mojavensis GN=GI11683 PE=3 SV=1 | Back alignment and function desciption |
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Score = 499 bits (1284), Expect = e-140, Method: Compositional matrix adjust.
Identities = 253/480 (52%), Positives = 334/480 (69%), Gaps = 11/480 (2%)
Query: 4 SRFSGVLQLTDLDDFIGPSQECIKPIPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLK 63
SRFSG LQLTDLDDFI PSQECIKP+ I+K + +TG+KI +Q DG Y +E+ ++KL+
Sbjct: 2 SRFSGALQLTDLDDFITPSQECIKPVTIDK-TKSKTGSKITVQADG-YYEESESGKQKLQ 59
Query: 64 KVEISLTDCLACSGCITSAESVLITQQSHEEVMKVIRENNAHKASSN-ENTKTIVLSLAI 122
KVEI+L DCLACSGCITSAE VLITQQS EE++KV+REN KAS + + +TIV ++A+
Sbjct: 60 KVEITLQDCLACSGCITSAEGVLITQQSQEELLKVLRENERLKASGDSDKVRTIVFTIAV 119
Query: 123 QPVLSLGAKFALSHEQVVAKLCGFFKRLGVDLVLDVGIAHCFSLVELENEFLDRFLSGGG 182
QP++SL +F L E+ L G+ ++LG D VL IA +L+E EF++R+
Sbjct: 120 QPLISLAHRFELGVEEAARHLSGYLRQLGADYVLSTKIADDLALLECRQEFVERYRDNAD 179
Query: 183 -PLFTSECPGWVCYAEKSHGEFILPYISRVKSPQQVMGSLIKTHLAEKLGVHPSHIYHVT 241
+ +S CPGWVCYAEK+HG FILP+I+ +SPQQ+MG L+K LAEKLGV S IYHVT
Sbjct: 180 LSMLSSSCPGWVCYAEKTHGNFILPHIATTRSPQQIMGVLVKQRLAEKLGVSGSRIYHVT 239
Query: 242 LMPCYDKKLEASRADFYNEELGYRDVDCVITAVELEVLLANELATTTLQEEKDGILDWPW 301
+MPCYDKKLEASR DFY+E RDVDCVIT++E+E +L E TLQ+ +DWPW
Sbjct: 240 VMPCYDKKLEASREDFYSEVNSSRDVDCVITSIEVEQMLQTE--EQTLQQFAPSDMDWPW 297
Query: 302 DEHNPHRMLLVN-GTGSGGYAHNVLSHAIRQLCPGESP-VVEFKPLRNPDIREATF-TCG 358
+ P M+ + T SGGYA ++ +A R+L E+P ++FK LRN D E + G
Sbjct: 298 TDQPPEAMVWAHESTMSGGYAEHIYKYAARELFNEETPNELQFKALRNRDFSEISLEKDG 357
Query: 359 DVTLRFCIANGFRNIQNLIQKLKRKRLP-YDFIEIMACPSGCLNGGAQIRNEKVASPKET 417
+ L+F IANGFRNIQNL+QKLKR + P Y F+E+MACPSGC+NGGAQ+R +E
Sbjct: 358 KIVLKFAIANGFRNIQNLMQKLKRGKGPGYHFVEVMACPSGCINGGAQVRPTTGQHVREL 417
Query: 418 ALELETILCDLAKSEPRENATLEHLYKAWLGGKSTDKGKHMLNTSYHNIPKNNIALNVKW 477
+LE + L +S P +NA +H+Y +L G TDK + +L+TSYH + K N ALN+KW
Sbjct: 418 TQQLEELYKQLPRSNP-DNAHTKHIYTDFLDGTQTDKSQSLLHTSYHAVEKLNTALNIKW 476
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Component of the cytosolic iron-sulfur (Fe/S) protein assembly machinery. Required for maturation of extramitochondrial Fe/S proteins. Drosophila mojavensis (taxid: 7230) |
| >sp|Q16ML2|NARF_AEDAE Probable cytosolic Fe-S cluster assembly factor AAEL012261 OS=Aedes aegypti GN=AAEL012261 PE=3 SV=1 | Back alignment and function description |
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| >sp|B5DK31|NARF_DROPS Probable cytosolic Fe-S cluster assembly factor GA29080 OS=Drosophila pseudoobscura pseudoobscura GN=GA29080 PE=3 SV=1 | Back alignment and function description |
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| >sp|B4GXC8|NARF_DROPE Probable cytosolic Fe-S cluster assembly factor GL21135 OS=Drosophila persimilis GN=GL21135 PE=3 SV=1 | Back alignment and function description |
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| >sp|B4JBE6|NARF_DROGR Probable cytosolic Fe-S cluster assembly factor GH10760 OS=Drosophila grimshawi GN=GH10760 PE=3 SV=1 | Back alignment and function description |
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| >sp|B4LQR5|NARF_DROVI Probable cytosolic Fe-S cluster assembly factor GJ13047 OS=Drosophila virilis GN=GJ13047 PE=3 SV=1 | Back alignment and function description |
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| >sp|B0WU52|NARF_CULQU Probable cytosolic Fe-S cluster assembly factor CPIJ010948 OS=Culex quinquefasciatus GN=CPIJ010948 PE=3 SV=2 | Back alignment and function description |
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| >sp|Q7PWB8|NARF_ANOGA Probable cytosolic Fe-S cluster assembly factor AGAP009023 OS=Anopheles gambiae GN=AGAP009023 PE=3 SV=3 | Back alignment and function description |
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| >sp|B4MUM8|NARF_DROWI Probable cytosolic Fe-S cluster assembly factor GK14772 OS=Drosophila willistoni GN=GK14772 PE=3 SV=1 | Back alignment and function description |
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| >sp|B3N018|NARF_DROAN Probable cytosolic Fe-S cluster assembly factor GF22738 OS=Drosophila ananassae GN=GF22738 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 477 | ||||||
| 156545553 | 484 | PREDICTED: probable cytosolic Fe-S clust | 0.989 | 0.975 | 0.530 | 1e-144 | |
| 307191772 | 484 | Nuclear prelamin A recognition factor-li | 0.987 | 0.973 | 0.537 | 1e-144 | |
| 307190233 | 482 | Nuclear prelamin A recognition factor-li | 0.987 | 0.977 | 0.538 | 1e-142 | |
| 189240985 | 484 | PREDICTED: similar to nitrate, fromate, | 0.983 | 0.969 | 0.538 | 1e-140 | |
| 340713495 | 486 | PREDICTED: probable cytosolic Fe-S clust | 0.993 | 0.975 | 0.528 | 1e-140 | |
| 350409304 | 486 | PREDICTED: probable cytosolic Fe-S clust | 0.993 | 0.975 | 0.524 | 1e-140 | |
| 332020976 | 484 | Putative cytosolic Fe-S cluster assembly | 0.987 | 0.973 | 0.527 | 1e-139 | |
| 195116175 | 476 | GI11683 [Drosophila mojavensis] gi|25951 | 0.983 | 0.985 | 0.527 | 1e-138 | |
| 157131925 | 478 | nitrate, fromate, iron dehydrogenase [Ae | 0.987 | 0.985 | 0.529 | 1e-138 | |
| 195164554 | 477 | GL21135 [Drosophila persimilis] gi|19847 | 0.983 | 0.983 | 0.532 | 1e-138 |
| >gi|156545553|ref|XP_001605725.1| PREDICTED: probable cytosolic Fe-S cluster assembly factor AAEL012261-like [Nasonia vitripennis] | Back alignment and taxonomy information |
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Score = 519 bits (1337), Expect = e-144, Method: Compositional matrix adjust.
Identities = 258/486 (53%), Positives = 338/486 (69%), Gaps = 14/486 (2%)
Query: 3 SSRFSGVLQLTDLDDFIGPSQECIKPIPIEKPSGPRTGAKIRIQDDGAYIQETNGRE-EK 61
+SRFSG LQLT+LDDFI PSQECIKP+ I+K + + G+KI+IQDDG+Y + G K
Sbjct: 2 ASRFSGALQLTNLDDFITPSQECIKPVEIKK-NKSKPGSKIKIQDDGSYAEVLEGGPLTK 60
Query: 62 LKKVEISLTDCLACSGCITSAESVLITQQSHEEVMKVIRENNAHKASSNENTKTIVLSLA 121
L KVEI+L DCLACSGCITSAESVL+TQQS EE++KV ++ + + +EN K IV+SL+
Sbjct: 61 LTKVEITLADCLACSGCITSAESVLVTQQSQEELLKVFKDKIEKQKAGDENVKFIVVSLS 120
Query: 122 IQPVLSLGAKFALSHEQVVAKLCGFFKRLGVDLVLDVGIAHCFSLVELENEFLDRFLSGG 181
IQP+LSL ++ L+ E+ L G+FK +G D+VLD+ +A SLVE EF++R+ +
Sbjct: 121 IQPILSLAERYKLTPEEAALHLTGYFKSMGADMVLDMTVAEDLSLVESAKEFVERYKAAK 180
Query: 182 G------PLFTSECPGWVCYAEKSHGEFILPYISRVKSPQQVMGSLIKTHLAEKLGVHPS 235
P+ S CPGWVCYAEK+HG FILPYIS KSPQQ+MGSL+K HLA+ G+ P
Sbjct: 181 EGSKNQLPMLASSCPGWVCYAEKTHGNFILPYISVTKSPQQIMGSLVKYHLADVQGLSPE 240
Query: 236 HIYHVTLMPCYDKKLEASRADFYNEELGYRDVDCVITAVELEVLLANELATTTLQEEKDG 295
+YHVTLMPCYDKKLEASR DFYN RDVDCVIT++ELE +L + +LQ+ G
Sbjct: 241 QVYHVTLMPCYDKKLEASREDFYNSLKETRDVDCVITSIELEQMLTQQ--DKSLQDFDKG 298
Query: 296 ILDWPW---DEHNPHRMLLVNGTGSGGYAHNVLSHAIRQLCPGESPVVEFKPLRNPDIRE 352
++ P+ + N +L G+GSGGYA + +A + L +E+K LRNPD +E
Sbjct: 299 EIEKPFKTMELENSGVLLGHQGSGSGGYADFIFHYAAKYLFQVTDAKLEYKSLRNPDFQE 358
Query: 353 ATF-TCGDVTLRFCIANGFRNIQNLIQKLKRKRLPYDFIEIMACPSGCLNGGAQIRNEKV 411
A G V L+F IANGFRNIQNL+QKLKR + PYD++E+MACP+GCLNGGAQIR +
Sbjct: 359 AVLEKDGQVLLKFAIANGFRNIQNLVQKLKRGKSPYDYVEVMACPTGCLNGGAQIRPQDG 418
Query: 412 ASPKETALELETILCDLAKSEPRENATLEHLYKAWLGGKSTDKGKHMLNTSYHNIPKNNI 471
P+E AL+LE L KS+P +N + LYK WL G+++DK L+T YH I K N+
Sbjct: 419 TQPRELALKLENEYHQLPKSDPEKNQAVADLYKTWLEGENSDKANAYLHTQYHEIEKMNV 478
Query: 472 ALNVKW 477
AL++KW
Sbjct: 479 ALSIKW 484
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Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307191772|gb|EFN75214.1| Nuclear prelamin A recognition factor-like protein [Harpegnathos saltator] | Back alignment and taxonomy information |
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| >gi|307190233|gb|EFN74344.1| Nuclear prelamin A recognition factor-like protein [Camponotus floridanus] | Back alignment and taxonomy information |
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| >gi|189240985|ref|XP_001808932.1| PREDICTED: similar to nitrate, fromate, iron dehydrogenase [Tribolium castaneum] gi|270012992|gb|EFA09440.1| hypothetical protein TcasGA2_TC010652 [Tribolium castaneum] | Back alignment and taxonomy information |
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| >gi|340713495|ref|XP_003395278.1| PREDICTED: probable cytosolic Fe-S cluster assembly factor AGAP009023-like [Bombus terrestris] | Back alignment and taxonomy information |
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| >gi|350409304|ref|XP_003488687.1| PREDICTED: probable cytosolic Fe-S cluster assembly factor AGAP009023-like [Bombus impatiens] | Back alignment and taxonomy information |
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| >gi|332020976|gb|EGI61369.1| Putative cytosolic Fe-S cluster assembly factor [Acromyrmex echinatior] | Back alignment and taxonomy information |
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| >gi|195116175|ref|XP_002002631.1| GI11683 [Drosophila mojavensis] gi|259511280|sp|B4KFU7.1|NARF_DROMO RecName: Full=Probable cytosolic Fe-S cluster assembly factor GI11683 gi|193913206|gb|EDW12073.1| GI11683 [Drosophila mojavensis] | Back alignment and taxonomy information |
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| >gi|157131925|ref|XP_001655974.1| nitrate, fromate, iron dehydrogenase [Aedes aegypti] gi|122067377|sp|Q16ML2.1|NARF_AEDAE RecName: Full=Probable cytosolic Fe-S cluster assembly factor AAEL012261 gi|108871353|gb|EAT35578.1| AAEL012261-PA [Aedes aegypti] | Back alignment and taxonomy information |
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| >gi|195164554|ref|XP_002023111.1| GL21135 [Drosophila persimilis] gi|198473422|ref|XP_002133255.1| GA29080 [Drosophila pseudoobscura pseudoobscura] gi|259511281|sp|B4GXC8.1|NARF_DROPE RecName: Full=Probable cytosolic Fe-S cluster assembly factor GL21135 gi|259511282|sp|B5DK31.1|NARF_DROPS RecName: Full=Probable cytosolic Fe-S cluster assembly factor GA29080 gi|194105196|gb|EDW27239.1| GL21135 [Drosophila persimilis] gi|198139449|gb|EDY70657.1| GA29080 [Drosophila pseudoobscura pseudoobscura] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 477 | ||||||
| UNIPROTKB|B4GXC8 | 477 | GL21135 "Probable cytosolic Fe | 0.983 | 0.983 | 0.519 | 1.9e-124 | |
| UNIPROTKB|B5DK31 | 477 | GA29080 "Probable cytosolic Fe | 0.983 | 0.983 | 0.519 | 1.9e-124 | |
| UNIPROTKB|B4KFU7 | 476 | GI11683 "Probable cytosolic Fe | 0.983 | 0.985 | 0.512 | 3.9e-124 | |
| UNIPROTKB|Q16ML2 | 478 | AAEL012261 "Probable cytosolic | 0.987 | 0.985 | 0.518 | 3.9e-124 | |
| UNIPROTKB|B4JBE6 | 476 | GH10760 "Probable cytosolic Fe | 0.983 | 0.985 | 0.510 | 3.1e-122 | |
| UNIPROTKB|B4LQR5 | 476 | GJ13047 "Probable cytosolic Fe | 0.983 | 0.985 | 0.510 | 1.1e-121 | |
| UNIPROTKB|Q7PWB8 | 478 | AGAP009023 "Probable cytosolic | 0.987 | 0.985 | 0.504 | 1.1e-121 | |
| UNIPROTKB|B0WU52 | 478 | CPIJ010948 "Probable cytosolic | 0.987 | 0.985 | 0.516 | 3.6e-121 | |
| UNIPROTKB|B4MUM8 | 477 | GK14772 "Probable cytosolic Fe | 0.985 | 0.985 | 0.508 | 3.6e-121 | |
| UNIPROTKB|B3N018 | 476 | GF22738 "Probable cytosolic Fe | 0.983 | 0.985 | 0.491 | 4.9e-117 |
| UNIPROTKB|B4GXC8 GL21135 "Probable cytosolic Fe-S cluster assembly factor GL21135" [Drosophila persimilis (taxid:7234)] | Back alignment and assigned GO terms |
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Score = 1223 (435.6 bits), Expect = 1.9e-124, P = 1.9e-124
Identities = 250/481 (51%), Positives = 323/481 (67%)
Query: 4 SRFSGVLQLTDLDDFIGPSQECIKPIPIEKPSGPRTGAKIRIQDDGAYIQETNGREEKLK 63
SRFSG LQLTDLDDFI PSQECIKP+ ++K + +TGAKI +Q+DG Y +E+ ++KL+
Sbjct: 2 SRFSGALQLTDLDDFITPSQECIKPVTVDKTATSKTGAKITVQEDG-YYEESESGKQKLQ 60
Query: 64 KVEISLTDCLACSGCITSAESVLITQQSHEEVMKVIRENNAHKASSN-ENTKTIVLSLAI 122
KVEI+L DCLACSGCITSAESVLITQQS EE++KV+REN KA+ + E +TIV ++A
Sbjct: 61 KVEITLQDCLACSGCITSAESVLITQQSEEELLKVLRENAKVKATGDMEQVRTIVFTIAT 120
Query: 123 QPVLSLGAKFALSHEQVVAKLCGFFKRLGVDLVLDVGIAHCFSLVELENEFLDRFLSGGG 182
QP+LSL ++ LS E+ L G+F+ LGVD VL +A +L+E + EF++R+
Sbjct: 121 QPLLSLAHRYQLSAEETARHLAGYFRSLGVDYVLCTKVADDLALLECQQEFVERYRDNEE 180
Query: 183 -PLFTSECPGWVCYAEKSHGEFILPYISRVKSPQQVMGSLIKTHLAEKLGVHPSHIYHVT 241
+ +S CPGWVCYAEK+HG FILPYI+ +SPQQ+MG L+K LAEKL + S IYHVT
Sbjct: 181 LTMLSSSCPGWVCYAEKTHGNFILPYIATTRSPQQIMGVLVKQFLAEKLNIPGSRIYHVT 240
Query: 242 LMPCYDKKLEASRADFYNEELGYRDVDCVIXXXXXXXXXXXXXXXXXXXXXKDGILDWPW 301
+MPCYDKKLEASR DFY+E RDVDCVI D LDWPW
Sbjct: 241 VMPCYDKKLEASRMDFYSEVNESRDVDCVITSVEVEQMLNEDERSLSEHEASD--LDWPW 298
Query: 302 DEHNPHRMLLVN-GTGSGGYAHNVLSHAIRQLCPGESPVVE--FKPLRNPDIREATFTCG 358
E P M+ + T SGGYA ++ A ++L E+P E FK LRN D RE +
Sbjct: 299 SEQRPESMVWSHEATLSGGYAEHIFKFAAKELF-NEAPPTELSFKQLRNRDFREISLEKD 357
Query: 359 DVT-LRFCIANGFRNIQNLIQKLKR-KRLPYDFIEIMACPSGCLNGGAQIRNEKVASPKE 416
D T L+F IANGFRNIQNL+QKLKR K Y F+E+MACPSGC+NGGAQ+R +E
Sbjct: 358 DKTVLKFAIANGFRNIQNLVQKLKRGKGASYHFVEVMACPSGCINGGAQVRPTTGQHVRE 417
Query: 417 TALELETILCDLAKSEPRENATLEHLYKAWLGGKSTDKGKHMLNTSYHNIPKNNIALNVK 476
+LE + L +S+P +NA + +Y+ +L G TDK +L+TSYH + K + ALN+K
Sbjct: 418 LTQQLEELYKKLPRSQP-DNAHTKLIYRDFLDGSHTDKSNELLHTSYHAVEKLSTALNIK 476
Query: 477 W 477
W
Sbjct: 477 W 477
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| UNIPROTKB|B5DK31 GA29080 "Probable cytosolic Fe-S cluster assembly factor GA29080" [Drosophila pseudoobscura pseudoobscura (taxid:46245)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B4KFU7 GI11683 "Probable cytosolic Fe-S cluster assembly factor GI11683" [Drosophila mojavensis (taxid:7230)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q16ML2 AAEL012261 "Probable cytosolic Fe-S cluster assembly factor AAEL012261" [Aedes aegypti (taxid:7159)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B4JBE6 GH10760 "Probable cytosolic Fe-S cluster assembly factor GH10760" [Drosophila grimshawi (taxid:7222)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B4LQR5 GJ13047 "Probable cytosolic Fe-S cluster assembly factor GJ13047" [Drosophila virilis (taxid:7244)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q7PWB8 AGAP009023 "Probable cytosolic Fe-S cluster assembly factor AGAP009023" [Anopheles gambiae (taxid:7165)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|B0WU52 CPIJ010948 "Probable cytosolic Fe-S cluster assembly factor CPIJ010948" [Culex quinquefasciatus (taxid:7176)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|B4MUM8 GK14772 "Probable cytosolic Fe-S cluster assembly factor GK14772" [Drosophila willistoni (taxid:7260)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|B3N018 GF22738 "Probable cytosolic Fe-S cluster assembly factor GF22738" [Drosophila ananassae (taxid:7217)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| B4KFU7 | NARF_DROMO | No assigned EC number | 0.5270 | 0.9832 | 0.9852 | N/A | N/A |
| Q4WQ87 | NAR1_ASPFU | No assigned EC number | 0.3245 | 0.8909 | 0.7118 | yes | N/A |
| A2Q9A9 | NAR1_ASPNC | No assigned EC number | 0.3285 | 0.8176 | 0.6532 | yes | N/A |
| Q5RF36 | NARFL_PONAB | No assigned EC number | 0.4743 | 0.9706 | 0.9726 | yes | N/A |
| Q9H6Q4 | NARFL_HUMAN | No assigned EC number | 0.4763 | 0.9706 | 0.9726 | yes | N/A |
| B4IMH3 | NARF_DROSE | No assigned EC number | 0.5010 | 0.9832 | 0.9832 | N/A | N/A |
| B4LQR5 | NARF_DROVI | No assigned EC number | 0.525 | 0.9832 | 0.9852 | N/A | N/A |
| Q7PWB8 | NARF_ANOGA | No assigned EC number | 0.5187 | 0.9874 | 0.9853 | yes | N/A |
| A8WH18 | NARFL_XENTR | No assigned EC number | 0.4979 | 0.9832 | 0.9852 | yes | N/A |
| Q9N392 | NARF_CAEEL | No assigned EC number | 0.3659 | 0.9496 | 0.9912 | yes | N/A |
| Q16ML2 | NARF_AEDAE | No assigned EC number | 0.5291 | 0.9874 | 0.9853 | N/A | N/A |
| A4FV58 | NARFL_BOVIN | No assigned EC number | 0.4596 | 0.9790 | 0.9810 | yes | N/A |
| A3LYR2 | NAR1_PICST | No assigned EC number | 0.3456 | 0.8385 | 0.7339 | yes | N/A |
| Q5B748 | NAR1_EMENI | No assigned EC number | 0.3422 | 0.8176 | 0.6610 | yes | N/A |
| B4GXC8 | NARF_DROPE | No assigned EC number | 0.5322 | 0.9832 | 0.9832 | N/A | N/A |
| Q2UJY8 | NAR1_ASPOR | No assigned EC number | 0.3127 | 0.9161 | 0.7199 | yes | N/A |
| B5DK31 | NARF_DROPS | No assigned EC number | 0.5322 | 0.9832 | 0.9832 | yes | N/A |
| B4ISL0 | NARF_DROYA | No assigned EC number | 0.5020 | 0.9811 | 0.9811 | N/A | N/A |
| Q8SYS7 | NARF_DROME | No assigned EC number | 0.4968 | 0.9832 | 0.9832 | yes | N/A |
| B6HUC4 | NAR1_PENCW | No assigned EC number | 0.342 | 0.8197 | 0.6473 | yes | N/A |
| B3N018 | NARF_DROAN | No assigned EC number | 0.5083 | 0.9832 | 0.9852 | N/A | N/A |
| Q7TMW6 | NARFL_MOUSE | No assigned EC number | 0.4751 | 0.9811 | 0.9831 | yes | N/A |
| B4JBE6 | NARF_DROGR | No assigned EC number | 0.5270 | 0.9832 | 0.9852 | N/A | N/A |
| Q6CFR3 | NAR1_YARLI | No assigned EC number | 0.3517 | 0.9580 | 0.9307 | yes | N/A |
| Q6BUI4 | NAR1_DEBHA | No assigned EC number | 0.3467 | 0.8218 | 0.7192 | yes | N/A |
| B0WU52 | NARF_CULQU | No assigned EC number | 0.525 | 0.9874 | 0.9853 | N/A | N/A |
| B4NSS7 | NARF_DROSI | No assigned EC number | 0.5031 | 0.9832 | 0.9832 | N/A | N/A |
| Q54F30 | NARF_DICDI | No assigned EC number | 0.4003 | 0.9790 | 0.8946 | yes | N/A |
| B4MUM8 | NARF_DROWI | No assigned EC number | 0.5187 | 0.9853 | 0.9853 | N/A | N/A |
| Q5BK18 | NARFL_RAT | No assigned EC number | 0.4762 | 0.9748 | 0.9768 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 1.12.7.2 | LOW CONFIDENCE prediction! |
| 3rd Layer | 1.12.7 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 477 | |||
| pfam02906 | 272 | pfam02906, Fe_hyd_lg_C, Iron only hydrogenase larg | 2e-80 | |
| COG4624 | 411 | COG4624, COG4624, Iron only hydrogenase large subu | 2e-70 | |
| TIGR02512 | 374 | TIGR02512, FeFe_hydrog_A, [FeFe] hydrogenase, grou | 8e-62 | |
| TIGR04105 | 462 | TIGR04105, FeFe_hydrog_B1, [FeFe] hydrogenase, gro | 7e-15 | |
| smart00902 | 52 | smart00902, Fe_hyd_SSU, Iron hydrogenase small sub | 0.001 |
| >gnl|CDD|217280 pfam02906, Fe_hyd_lg_C, Iron only hydrogenase large subunit, C-terminal domain | Back alignment and domain information |
|---|
Score = 250 bits (640), Expect = 2e-80
Identities = 103/303 (33%), Positives = 153/303 (50%), Gaps = 41/303 (13%)
Query: 114 KTIVLSLAIQPVLSLGAKFALSHEQVVAKLCGFFKRLGVDLVLDVGIAHCFSLVELENEF 173
K +V +A ++ G +F L V KL ++LG D V D +++E +EF
Sbjct: 1 KKVVAQIAPAVRVAFGEEFGLPPGTVTGKLVAALRKLGFDYVFDTAFGADLTIMEEASEF 60
Query: 174 LDRFLSGG-GPLFTSECPGWVCYAEKSHGEFILPYISRVKSPQQVMGSLIKTHLAEKLGV 232
L+R G P+FTS CP WV Y EK + E +LP +S KSP Q+ G+LIKT
Sbjct: 61 LERLKKGEKLPMFTSCCPAWVKYVEKYYPE-LLPNLSTCKSPMQMFGALIKTD------- 112
Query: 233 HPSHIYHVTLMPCYDKKLEASRADFYNEELGYRDVDCVITAVELEVLL-ANELATTTLQE 291
P I+ V++MPC KK EA+R +F DVD V+T EL ++ + +L++
Sbjct: 113 -PPDIFVVSIMPCTAKKFEAARPEFK------GDVDAVLTTRELAAMIKEAGIDFASLED 165
Query: 292 EKDGILDWPWDEHNPHRMLLVNGTG-------SGGYAHNVLSHAIRQLCPGESPVVEFKP 344
E+ D P E +G +GG L A L E P +EFK
Sbjct: 166 EE---FDSPLGE----------SSGAGRIFGVTGGVMEAALRTAYELLTGKELPNIEFKQ 212
Query: 345 LRNPD-IREATFTCGDVTLRFCIANGFRNIQNLIQKLKRKRLPYDFIEIMACPSGCLNGG 403
+R + I+EAT D+ ++ + +G +N + L++K+K + Y FIE+MACP GC+ GG
Sbjct: 213 VRGLEGIKEATV---DIEVKVAVVSGLKNARKLLEKIKAGEIDYHFIEVMACPGGCIGGG 269
Query: 404 AQI 406
Q
Sbjct: 270 GQP 272
|
Length = 272 |
| >gnl|CDD|226972 COG4624, COG4624, Iron only hydrogenase large subunit, C-terminal domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|233903 TIGR02512, FeFe_hydrog_A, [FeFe] hydrogenase, group A | Back alignment and domain information |
|---|
| >gnl|CDD|234472 TIGR04105, FeFe_hydrog_B1, [FeFe] hydrogenase, group B1/B3 | Back alignment and domain information |
|---|
| >gnl|CDD|214899 smart00902, Fe_hyd_SSU, Iron hydrogenase small subunit | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 477 | |||
| KOG2439|consensus | 459 | 100.0 | ||
| COG4624 | 411 | Iron only hydrogenase large subunit, C-terminal do | 100.0 | |
| TIGR02512 | 374 | Fe_only_hydrog hydrogenases, Fe-only. This model d | 100.0 | |
| PF02906 | 285 | Fe_hyd_lg_C: Iron only hydrogenase large subunit, | 100.0 | |
| PF02256 | 60 | Fe_hyd_SSU: Iron hydrogenase small subunit; InterP | 99.31 | |
| COG1034 | 693 | NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreduc | 98.77 | |
| COG3383 | 978 | Uncharacterized anaerobic dehydrogenase [General f | 98.61 | |
| TIGR01973 | 603 | NuoG NADH-quinone oxidoreductase, chain G. This mo | 98.27 | |
| PTZ00305 | 297 | NADH:ubiquinone oxidoreductase; Provisional | 98.26 | |
| TIGR02494 | 295 | PFLE_PFLC glycyl-radical enzyme activating protein | 98.19 | |
| PRK07860 | 797 | NADH dehydrogenase subunit G; Validated | 98.14 | |
| PRK08493 | 819 | NADH dehydrogenase subunit G; Validated | 98.13 | |
| PRK09130 | 687 | NADH dehydrogenase subunit G; Validated | 98.11 | |
| PRK09129 | 776 | NADH dehydrogenase subunit G; Validated | 98.09 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 98.05 | |
| PF12837 | 24 | Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 | 97.94 | |
| PF13187 | 55 | Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_ | 97.83 | |
| PF14697 | 59 | Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE | 97.8 | |
| PRK08166 | 847 | NADH dehydrogenase subunit G; Validated | 97.79 | |
| PRK07569 | 234 | bidirectional hydrogenase complex protein HoxU; Va | 97.74 | |
| PF00037 | 24 | Fer4: 4Fe-4S binding domain; InterPro: IPR001450 T | 97.71 | |
| COG1143 | 172 | NuoI Formate hydrogenlyase subunit 6/NADH:ubiquino | 97.68 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 97.41 | |
| PF12838 | 52 | Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR0014 | 97.32 | |
| TIGR02179 | 78 | PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta | 97.16 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 97.13 | |
| KOG3256|consensus | 212 | 97.1 | ||
| COG1142 | 165 | HycB Fe-S-cluster-containing hydrogenase component | 97.05 | |
| PRK08348 | 120 | NADH-plastoquinone oxidoreductase subunit; Provisi | 97.0 | |
| PRK05113 | 191 | electron transport complex protein RnfB; Provision | 96.97 | |
| TIGR02936 | 91 | fdxN_nitrog ferredoxin III, nif-specific. Members | 96.96 | |
| PRK10076 | 213 | pyruvate formate lyase II activase; Provisional | 96.92 | |
| PRK09624 | 105 | porD pyuvate ferredoxin oxidoreductase subunit del | 96.92 | |
| TIGR01944 | 165 | rnfB electron transport complex, RnfABCDGE type, B | 96.92 | |
| PF13237 | 52 | Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A. | 96.89 | |
| PRK08222 | 181 | hydrogenase 4 subunit H; Validated | 96.87 | |
| COG2768 | 354 | Uncharacterized Fe-S center protein [General funct | 96.85 | |
| PRK05888 | 164 | NADH dehydrogenase subunit I; Provisional | 96.8 | |
| PRK09625 | 133 | porD pyruvate flavodoxin oxidoreductase subunit de | 96.76 | |
| PF12798 | 15 | Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 | 96.73 | |
| TIGR01971 | 122 | NuoI NADH-quinone oxidoreductase, chain I. This mo | 96.72 | |
| COG1144 | 91 | Pyruvate:ferredoxin oxidoreductase and related 2-o | 96.63 | |
| PF12797 | 22 | Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 | 96.57 | |
| PRK08764 | 135 | ferredoxin; Provisional | 96.57 | |
| TIGR00403 | 183 | ndhI NADH-plastoquinone oxidoreductase subunit I p | 96.55 | |
| TIGR03048 | 80 | PS_I_psaC photosystem I iron-sulfur protein PsaC. | 96.54 | |
| TIGR02912 | 314 | sulfite_red_C sulfite reductase, subunit C. Member | 96.53 | |
| PRK06991 | 270 | ferredoxin; Provisional | 96.49 | |
| COG1146 | 68 | Ferredoxin [Energy production and conversion] | 96.47 | |
| CHL00065 | 81 | psaC photosystem I subunit VII | 96.46 | |
| PRK09623 | 105 | vorD 2-ketoisovalerate ferredoxin oxidoreductase s | 96.42 | |
| TIGR02163 | 255 | napH_ ferredoxin-type protein, NapH/MauN family. M | 96.41 | |
| PRK06273 | 165 | ferredoxin; Provisional | 96.41 | |
| TIGR02060 | 132 | aprB adenosine phosphosulphate reductase, beta sub | 96.4 | |
| TIGR00402 | 101 | napF ferredoxin-type protein NapF. The gene codes | 96.36 | |
| PLN00071 | 81 | photosystem I subunit VII; Provisional | 96.35 | |
| PRK12387 | 180 | formate hydrogenlyase complex iron-sulfur subunit; | 96.34 | |
| PF13247 | 98 | Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX | 96.26 | |
| PF14697 | 59 | Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE | 96.25 | |
| COG1145 | 99 | NapF Ferredoxin [Energy production and conversion] | 96.19 | |
| PRK09626 | 103 | oorD 2-oxoglutarate-acceptor oxidoreductase subuni | 96.1 | |
| TIGR01660 | 492 | narH nitrate reductase, beta subunit. The Nitrate | 96.07 | |
| CHL00014 | 167 | ndhI NADH dehydrogenase subunit I | 96.03 | |
| PRK02651 | 81 | photosystem I subunit VII; Provisional | 96.02 | |
| TIGR02066 | 341 | dsrB sulfite reductase, dissimilatory-type beta su | 96.0 | |
| PRK09477 | 271 | napH quinol dehydrogenase membrane component; Prov | 95.91 | |
| COG0437 | 203 | HybA Fe-S-cluster-containing hydrogenase component | 95.84 | |
| PF12800 | 17 | Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 | 95.79 | |
| TIGR03478 | 321 | DMSO_red_II_bet DMSO reductase family type II enzy | 95.78 | |
| PRK10194 | 163 | ferredoxin-type protein; Provisional | 95.72 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 95.65 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 95.57 | |
| TIGR03224 | 411 | benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA p | 95.45 | |
| PRK15449 | 95 | ferredoxin-like protein FixX; Provisional | 95.42 | |
| TIGR02700 | 234 | flavo_MJ0208 archaeoflavoprotein, MJ0208 family. T | 95.3 | |
| COG2221 | 317 | DsrA Dissimilatory sulfite reductase (desulfovirid | 95.26 | |
| PRK14028 | 312 | pyruvate ferredoxin oxidoreductase subunit gamma/d | 95.23 | |
| TIGR00397 | 213 | mauM_napG MauM/NapG family ferredoxin-type protein | 95.21 | |
| TIGR03149 | 225 | cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S | 95.2 | |
| COG1143 | 172 | NuoI Formate hydrogenlyase subunit 6/NADH:ubiquino | 95.15 | |
| PRK07118 | 280 | ferredoxin; Validated | 95.12 | |
| COG1149 | 284 | MinD superfamily P-loop ATPase containing an inser | 95.12 | |
| PRK10194 | 163 | ferredoxin-type protein; Provisional | 94.99 | |
| PF13237 | 52 | Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A. | 94.85 | |
| TIGR02176 | 1165 | pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid | 94.85 | |
| TIGR00397 | 213 | mauM_napG MauM/NapG family ferredoxin-type protein | 94.75 | |
| PRK14993 | 244 | tetrathionate reductase subunit B; Provisional | 94.72 | |
| PRK09898 | 208 | hypothetical protein; Provisional | 94.63 | |
| PRK09626 | 103 | oorD 2-oxoglutarate-acceptor oxidoreductase subuni | 94.51 | |
| COG4231 | 640 | Indolepyruvate ferredoxin oxidoreductase, alpha an | 94.5 | |
| TIGR01582 | 283 | FDH-beta formate dehydrogenase, beta subunit, Fe-S | 94.33 | |
| PRK07118 | 280 | ferredoxin; Validated | 94.3 | |
| PRK09476 | 254 | napG quinol dehydrogenase periplasmic component; P | 94.29 | |
| COG1145 | 99 | NapF Ferredoxin [Energy production and conversion] | 94.25 | |
| PRK08348 | 120 | NADH-plastoquinone oxidoreductase subunit; Provisi | 94.23 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 94.19 | |
| PRK09476 | 254 | napG quinol dehydrogenase periplasmic component; P | 94.08 | |
| TIGR02936 | 91 | fdxN_nitrog ferredoxin III, nif-specific. Members | 93.98 | |
| PRK13795 | 636 | hypothetical protein; Provisional | 93.92 | |
| PF13746 | 69 | Fer4_18: 4Fe-4S dicluster domain | 93.82 | |
| PRK10330 | 181 | formate dehydrogenase-H ferredoxin subunit; Provis | 93.64 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 93.44 | |
| cd07030 | 259 | RNAP_D D subunit of Archaeal RNA polymerase. The D | 93.42 | |
| PRK10330 | 181 | formate dehydrogenase-H ferredoxin subunit; Provis | 93.38 | |
| TIGR00273 | 432 | iron-sulfur cluster-binding protein. Members of th | 93.36 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 93.35 | |
| PF13187 | 55 | Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_ | 93.25 | |
| TIGR03287 | 391 | methan_mark_16 putative methanogenesis marker 16 m | 93.24 | |
| PRK09898 | 208 | hypothetical protein; Provisional | 93.19 | |
| PRK10882 | 328 | hydrogenase 2 protein HybA; Provisional | 93.13 | |
| PF12838 | 52 | Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR0014 | 93.11 | |
| PRK09326 | 341 | F420H2 dehydrogenase subunit F; Provisional | 93.05 | |
| KOG0063|consensus | 592 | 93.02 | ||
| PF13484 | 67 | Fer4_16: 4Fe-4S double cluster binding domain | 93.0 | |
| PRK10882 | 328 | hydrogenase 2 protein HybA; Provisional | 92.98 | |
| PRK08222 | 181 | hydrogenase 4 subunit H; Validated | 92.88 | |
| TIGR03149 | 225 | cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S | 92.87 | |
| CHL00065 | 81 | psaC photosystem I subunit VII | 92.79 | |
| TIGR03294 | 228 | FrhG coenzyme F420 hydrogenase, subunit gamma. Thi | 92.77 | |
| PF13484 | 67 | Fer4_16: 4Fe-4S double cluster binding domain | 92.76 | |
| PRK14993 | 244 | tetrathionate reductase subunit B; Provisional | 92.75 | |
| PLN00071 | 81 | photosystem I subunit VII; Provisional | 92.65 | |
| TIGR02951 | 161 | DMSO_dmsB DMSO reductase, iron-sulfur subunit. Thi | 92.58 | |
| cd01916 | 731 | ACS_1 Acetyl-CoA synthase (ACS), also known as ace | 92.1 | |
| TIGR02179 | 78 | PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta | 92.05 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 92.05 | |
| TIGR00403 | 183 | ndhI NADH-plastoquinone oxidoreductase subunit I p | 91.97 | |
| PRK06273 | 165 | ferredoxin; Provisional | 91.75 | |
| PRK00783 | 263 | DNA-directed RNA polymerase subunit D; Provisional | 91.74 | |
| PRK12387 | 180 | formate hydrogenlyase complex iron-sulfur subunit; | 91.69 | |
| TIGR03048 | 80 | PS_I_psaC photosystem I iron-sulfur protein PsaC. | 91.67 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 91.65 | |
| PF13459 | 65 | Fer4_15: 4Fe-4S single cluster domain | 91.47 | |
| TIGR02745 | 434 | ccoG_rdxA_fixG cytochrome c oxidase accessory prot | 91.46 | |
| COG1141 | 68 | Fer Ferredoxin [Energy production and conversion] | 91.45 | |
| CHL00014 | 167 | ndhI NADH dehydrogenase subunit I | 91.2 | |
| TIGR02064 | 402 | dsrA sulfite reductase, dissimilatory-type alpha s | 91.18 | |
| COG2878 | 198 | Predicted NADH:ubiquinone oxidoreductase, subunit | 91.14 | |
| TIGR02951 | 161 | DMSO_dmsB DMSO reductase, iron-sulfur subunit. Thi | 91.12 | |
| PRK09625 | 133 | porD pyruvate flavodoxin oxidoreductase subunit de | 91.09 | |
| TIGR03336 | 595 | IOR_alpha indolepyruvate ferredoxin oxidoreductase | 91.01 | |
| PRK02651 | 81 | photosystem I subunit VII; Provisional | 90.88 | |
| PRK05888 | 164 | NADH dehydrogenase subunit I; Provisional | 90.8 | |
| TIGR02494 | 295 | PFLE_PFLC glycyl-radical enzyme activating protein | 90.63 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 90.53 | |
| PRK00941 | 781 | acetyl-CoA decarbonylase/synthase complex subunit | 90.52 | |
| TIGR01971 | 122 | NuoI NADH-quinone oxidoreductase, chain I. This mo | 90.28 | |
| TIGR00314 | 784 | cdhA CO dehydrogenase/acetyl-CoA synthase complex, | 90.19 | |
| TIGR03278 | 404 | methan_mark_10 putative methanogenesis marker prot | 90.04 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 89.75 | |
| PRK06991 | 270 | ferredoxin; Provisional | 89.63 | |
| COG2878 | 198 | Predicted NADH:ubiquinone oxidoreductase, subunit | 89.26 | |
| PF13247 | 98 | Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX | 89.25 | |
| TIGR02512 | 374 | Fe_only_hydrog hydrogenases, Fe-only. This model d | 89.18 | |
| PF13370 | 58 | Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A | 88.73 | |
| PRK09624 | 105 | porD pyuvate ferredoxin oxidoreductase subunit del | 88.57 | |
| TIGR03478 | 321 | DMSO_red_II_bet DMSO reductase family type II enzy | 88.4 | |
| PRK05113 | 191 | electron transport complex protein RnfB; Provision | 88.08 | |
| TIGR01944 | 165 | rnfB electron transport complex, RnfABCDGE type, B | 88.0 | |
| PRK09623 | 105 | vorD 2-ketoisovalerate ferredoxin oxidoreductase s | 87.62 | |
| PRK05035 | 695 | electron transport complex protein RnfC; Provision | 87.43 | |
| COG0247 | 388 | GlpC Fe-S oxidoreductase [Energy production and co | 86.51 | |
| COG1139 | 459 | Uncharacterized conserved protein containing a fer | 86.37 | |
| TIGR02060 | 132 | aprB adenosine phosphosulphate reductase, beta sub | 86.08 | |
| COG2768 | 354 | Uncharacterized Fe-S center protein [General funct | 86.04 | |
| TIGR01945 | 435 | rnfC electron transport complex, RnfABCDGE type, C | 85.62 | |
| PRK09326 | 341 | F420H2 dehydrogenase subunit F; Provisional | 85.51 | |
| TIGR03224 | 411 | benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA p | 85.4 | |
| TIGR00402 | 101 | napF ferredoxin-type protein NapF. The gene codes | 85.26 | |
| COG1149 | 284 | MinD superfamily P-loop ATPase containing an inser | 85.24 | |
| TIGR01582 | 283 | FDH-beta formate dehydrogenase, beta subunit, Fe-S | 84.71 | |
| TIGR02700 | 234 | flavo_MJ0208 archaeoflavoprotein, MJ0208 family. T | 84.71 | |
| PRK14028 | 312 | pyruvate ferredoxin oxidoreductase subunit gamma/d | 84.41 | |
| PF13183 | 57 | Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_ | 83.55 | |
| PRK08764 | 135 | ferredoxin; Provisional | 83.35 | |
| COG2221 | 317 | DsrA Dissimilatory sulfite reductase (desulfovirid | 83.07 | |
| TIGR02910 | 334 | sulfite_red_A sulfite reductase, subunit A. Member | 82.81 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 82.05 | |
| TIGR02176 | 1165 | pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid | 82.03 | |
| PRK11168 | 396 | glpC sn-glycerol-3-phosphate dehydrogenase subunit | 82.01 | |
| KOG3256|consensus | 212 | 81.92 | ||
| PRK12576 | 279 | succinate dehydrogenase iron-sulfur subunit; Provi | 81.77 | |
| COG1146 | 68 | Ferredoxin [Energy production and conversion] | 81.74 | |
| PRK06259 | 486 | succinate dehydrogenase/fumarate reductase iron-su | 81.66 | |
| COG2440 | 99 | FixX Ferredoxin-like protein [Energy production an | 80.77 | |
| TIGR03294 | 228 | FrhG coenzyme F420 hydrogenase, subunit gamma. Thi | 80.58 | |
| PRK07570 | 250 | succinate dehydrogenase/fumarate reductase iron-su | 80.38 | |
| COG1453 | 391 | Predicted oxidoreductases of the aldo/keto reducta | 80.36 | |
| PF13534 | 61 | Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9 | 80.04 |
| >KOG2439|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-110 Score=824.30 Aligned_cols=453 Identities=43% Similarity=0.781 Sum_probs=414.0
Q ss_pred cccccCCCCCCCcCCCccccccccccCCCCCCCCceEEEecCCCceeec-Ccccccccccccccccccccchhhhhcccc
Q psy3876 7 SGVLQLTDLDDFIGPSQECIKPIPIEKPSGPRTGAKIRIQDDGAYIQET-NGREEKLKKVEISLTDCLACSGCITSAESV 85 (477)
Q Consensus 7 s~~~~~~~ldD~i~~~~~CI~c~r~c~~~~~~~~~~i~i~~~G~~~~i~-~~~~~~~~~a~I~~~~Ci~Cg~Cv~~Cp~~ 85 (477)
|+.|+++||||||.|+++||+|..+-..+. .+.|+++.+|.+..+. ++....+++|+|+++||++|++|||+.+++
T Consensus 1 s~~l~l~dlnDFi~p~~~CikP~~~~k~~~---~~~~~v~~d~~~~v~~e~g~t~~l~~~kISLsDCLACSGCITSaEtV 77 (459)
T KOG2439|consen 1 SALLRLSDLNDFIAPSLACIKPLQVSKTKK---KKNIRVDADGPYEVIKEKGETHQLEKVKISLSDCLACSGCITSAETV 77 (459)
T ss_pred CCcccccchhhhhchHHHhccchhhccccc---CCcccccCCCcceeecCCCccccccceeeeHHhhhhccCccchhhhh
Confidence 688999999999999999999997655532 2369999999888775 445567899999999999999999999999
Q ss_pred cccccChHHHHHHHHHhhhccccCCCCCcEEEEEecccchhhhhhhcCCCHHHHHHHHHHHHHHcCCcEEEECccchhhh
Q psy3876 86 LITQQSHEEVMKVIRENNAHKASSNENTKTIVLSLAIQPVLSLGAKFALSHEQVVAKLCGFFKRLGVDLVLDVGIAHCFS 165 (477)
Q Consensus 86 ai~~~s~~~~~~~l~~~~~~~~~~~~~~~~~vvsisP~~~~sl~~~f~l~~~~~~~~l~~~Lk~lGf~~V~Dt~~~ad~~ 165 (477)
+++.||+.++.+.|+..++ ++.+||++|||+|+||++.|||+..++...|..++|++|+|+|+||+++++++
T Consensus 78 lls~Qs~~~~~k~l~~~k~--------~~~lvvsvSPQ~~~slAa~~gls~~e~~~~L~~F~kklgvhyv~DT~~sR~~s 149 (459)
T KOG2439|consen 78 LLSEQSHKEFLKVLQKSKQ--------QKVLVVSVSPQSRASLAAKYGLSLREAALRLTSFFKKLGVHYVVDTSFSRDFS 149 (459)
T ss_pred hhhhhhHHHHHHhhhhccc--------cceEEEecChhHHHHHHHHhCCCHHHHHHHHHHHHHhcCeeEEeehHHHHHHH
Confidence 9999999999999987653 67889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcC----CCCcccccChhHHHHHHHhcCCCccCCCCCCCCHHHHHHHHHHHHhHHhhCCCCCcEEEEE
Q psy3876 166 LVELENEFLDRFLSG----GGPLFTSECPGWVCYAEKSHGEFILPYISRVKSPQQVMGSLIKTHLAEKLGVHPSHIYHVT 241 (477)
Q Consensus 166 ~~e~~~e~~~~~~~~----~~p~itS~CP~~V~yiEk~~p~~Lip~ls~v~SP~~~~g~~iK~~~~~~~~~~~~~i~~V~ 241 (477)
+.|..+||+.|+++. ..||++|+|||||||+||+||. ||||||+||||||++|++||.+++++.++.|+++|||+
T Consensus 150 l~es~~Efv~~~r~~~~~~~~PlLsSaCPG~v~YaEkt~~~-Lip~ls~vkSPQQi~Gslikd~~~~q~~l~p~~v~hvs 228 (459)
T KOG2439|consen 150 LSESYEEFVARYRQHSEEERTPLLSSACPGWVCYAEKTHGR-LIPHLSRVKSPQQIMGSLIKDFFASQQSLSPEKVFHVS 228 (459)
T ss_pred HHHHHHHHHHHhhcccccccccchhhcCCceeEEeeccccc-cchhhhccCCHHHhhhHHHHHHHHHhcCCCccceeeEe
Confidence 999999999987653 5699999999999999999999 99999999999999999999999999999999999999
Q ss_pred EEccccchhhhhcccccccccCCCCccEEeCHHHHHHHHHhcCCCCCCCcCCCCCCCCCCCCCCccccccccccCchhHH
Q psy3876 242 LMPCYDKKLEASRADFYNEELGYRDVDCVITAVELEVLLANELATTTLQEEKDGILDWPWDEHNPHRMLLVNGTGSGGYA 321 (477)
Q Consensus 242 I~PC~aKK~Ea~r~~~~~~~~~~~~VD~VLT~~El~~~l~~~~i~~~~~~~~~~~~d~~~~~~s~~~~~~~~~~~sGG~~ 321 (477)
+|||+|||+||+|++|- +++.+++|||||++|+.+++++.++ +++..+.+ .|...+..+.....++.||.||||+
T Consensus 229 vMPCfDKKLEAsR~~f~--~~~~r~~DcVlT~~Ei~k~l~e~~~--~l~~~~~~-~d~l~~~~~~~~~~~~~GgsSGGYa 303 (459)
T KOG2439|consen 229 VMPCFDKKLEASREEFK--EHGVRDVDCVLTTGEIFKLLEELDF--DLPVRDAE-VDTLPSGLSRETVTSNDGGSSGGYA 303 (459)
T ss_pred ecccccHhhhccchhhh--ccCCcccceEeehHHHHHHHHhcCc--ccccccch-hhcccccccccceeeccCCCCcchH
Confidence 99999999999999984 4567899999999999999999999 88877543 4544333333334467899999999
Q ss_pred HHHHHHHHHHhCCCCCCCcceeeccCCCcEEEEEe-CCceeEeEEEEeChHHHHHHHHHHHcCCCCCcEEEecCCCcccc
Q psy3876 322 HNVLSHAIRQLCPGESPVVEFKPLRNPDIREATFT-CGDVTLRFCIANGFRNIQNLIQKLKRKRLPYDFIEIMACPSGCL 400 (477)
Q Consensus 322 e~v~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~-~g~~~~~~~~v~G~~ni~~ll~~i~~g~~~~~fiEvmACpgGCi 400 (477)
++|+|++++++||..+.++.++..||.|++|+++. +|++++++|.+||||||||+++++++|+.+|||||||||||||+
T Consensus 304 ~~i~r~aak~lfg~~v~~~t~k~~rN~Df~e~tl~~~geill~~a~~yGFRNiQNlvrklkk~k~pyhyvEVmACpgGC~ 383 (459)
T KOG2439|consen 304 EHIFRHAAKELFGEIVEPVTYKELRNSDFREVTLEKNGEILLRFAAAYGFRNIQNLVRKLKKGKFPYHYVEVMACPGGCI 383 (459)
T ss_pred HHHHHHHHHHhcCCcccchhhhhhccccceeeeeecCchHHHHHHHhhhhhHHHHHHHHHhccCCCcceeEEeccCcccc
Confidence 99999999999999888889999999999999999 99999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCCCChHHHHHHHHHHHhhCCCCCCCCcHHHHHHHHHHhCCCCCcccccceeeeeccccCCCcccCCCC
Q psy3876 401 NGGAQIRNEKVASPKETALELETILCDLAKSEPRENATLEHLYKAWLGGKSTDKGKHMLNTSYHNIPKNNIALNVKW 477 (477)
Q Consensus 401 ~Gggq~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~n~~~~~ly~~~l~~~~~~~~~~llht~y~~~~~~~~~~~~~w 477 (477)
|||||.+.++....+++++.++++|.+.+.+.+++.|.+.+||++|+.+ ++..+..+|||+||+|++.+.++.++|
T Consensus 384 NGgGQl~~~~~~~~~~llq~ve~ly~e~~~~~~e~~~~~~~L~E~w~k~-~~~~~r~~Lht~y~avek~~~sl~~kW 459 (459)
T KOG2439|consen 384 NGGGQLQTPDGHARKELLQQVEALYGEIPRRRDESSPTVPKLEEEWLKG-DSKKARKVLHTDYQAVEKDVTSLGNKW 459 (459)
T ss_pred CCCccccCCccchHHHHHHHHHHhhccCccccCccccchhHHHHHHHhc-CchhhhhhhcccchhhhcchhhhccCC
Confidence 9999999877667789999999999999999998889999999999998 788899999999999999999999999
|
|
| >COG4624 Iron only hydrogenase large subunit, C-terminal domain [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR02512 Fe_only_hydrog hydrogenases, Fe-only | Back alignment and domain information |
|---|
| >PF02906 Fe_hyd_lg_C: Iron only hydrogenase large subunit, C-terminal domain; InterPro: IPR004108 Proteins containing this domain may be involved in the mechanism of biological hydrogen activation and contain 4FE-4S clusters | Back alignment and domain information |
|---|
| >PF02256 Fe_hyd_SSU: Iron hydrogenase small subunit; InterPro: IPR003149 Many microorganisms, such as methanogenic, acetogenic, nitrogen-fixing, photosynthetic, or sulphate-reducing bacteria, metabolise hydrogen | Back alignment and domain information |
|---|
| >COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion] | Back alignment and domain information |
|---|
| >COG3383 Uncharacterized anaerobic dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR01973 NuoG NADH-quinone oxidoreductase, chain G | Back alignment and domain information |
|---|
| >PTZ00305 NADH:ubiquinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
| >TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family | Back alignment and domain information |
|---|
| >PRK07860 NADH dehydrogenase subunit G; Validated | Back alignment and domain information |
|---|
| >PRK08493 NADH dehydrogenase subunit G; Validated | Back alignment and domain information |
|---|
| >PRK09130 NADH dehydrogenase subunit G; Validated | Back alignment and domain information |
|---|
| >PRK09129 NADH dehydrogenase subunit G; Validated | Back alignment and domain information |
|---|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
| >PF12837 Fer4_6: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters | Back alignment and domain information |
|---|
| >PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J | Back alignment and domain information |
|---|
| >PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B | Back alignment and domain information |
|---|
| >PRK08166 NADH dehydrogenase subunit G; Validated | Back alignment and domain information |
|---|
| >PRK07569 bidirectional hydrogenase complex protein HoxU; Validated | Back alignment and domain information |
|---|
| >PF00037 Fer4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters | Back alignment and domain information |
|---|
| >COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion] | Back alignment and domain information |
|---|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
| >PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters | Back alignment and domain information |
|---|
| >TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family | Back alignment and domain information |
|---|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
| >KOG3256|consensus | Back alignment and domain information |
|---|
| >COG1142 HycB Fe-S-cluster-containing hydrogenase components 2 [Energy production and conversion] | Back alignment and domain information |
|---|
| >PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional | Back alignment and domain information |
|---|
| >PRK05113 electron transport complex protein RnfB; Provisional | Back alignment and domain information |
|---|
| >TIGR02936 fdxN_nitrog ferredoxin III, nif-specific | Back alignment and domain information |
|---|
| >PRK10076 pyruvate formate lyase II activase; Provisional | Back alignment and domain information |
|---|
| >PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed | Back alignment and domain information |
|---|
| >TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit | Back alignment and domain information |
|---|
| >PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A | Back alignment and domain information |
|---|
| >PRK08222 hydrogenase 4 subunit H; Validated | Back alignment and domain information |
|---|
| >COG2768 Uncharacterized Fe-S center protein [General function prediction only] | Back alignment and domain information |
|---|
| >PRK05888 NADH dehydrogenase subunit I; Provisional | Back alignment and domain information |
|---|
| >PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed | Back alignment and domain information |
|---|
| >PF12798 Fer4_3: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters | Back alignment and domain information |
|---|
| >TIGR01971 NuoI NADH-quinone oxidoreductase, chain I | Back alignment and domain information |
|---|
| >COG1144 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Energy production and conversion] | Back alignment and domain information |
|---|
| >PF12797 Fer4_2: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters | Back alignment and domain information |
|---|
| >PRK08764 ferredoxin; Provisional | Back alignment and domain information |
|---|
| >TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein | Back alignment and domain information |
|---|
| >TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC | Back alignment and domain information |
|---|
| >TIGR02912 sulfite_red_C sulfite reductase, subunit C | Back alignment and domain information |
|---|
| >PRK06991 ferredoxin; Provisional | Back alignment and domain information |
|---|
| >COG1146 Ferredoxin [Energy production and conversion] | Back alignment and domain information |
|---|
| >CHL00065 psaC photosystem I subunit VII | Back alignment and domain information |
|---|
| >PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed | Back alignment and domain information |
|---|
| >TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family | Back alignment and domain information |
|---|
| >PRK06273 ferredoxin; Provisional | Back alignment and domain information |
|---|
| >TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit | Back alignment and domain information |
|---|
| >TIGR00402 napF ferredoxin-type protein NapF | Back alignment and domain information |
|---|
| >PLN00071 photosystem I subunit VII; Provisional | Back alignment and domain information |
|---|
| >PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional | Back alignment and domain information |
|---|
| >PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B | Back alignment and domain information |
|---|
| >PF14697 Fer4_21: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 1H7X_C 1H7W_A 1GT8_A 1GTE_B 1GTH_B | Back alignment and domain information |
|---|
| >COG1145 NapF Ferredoxin [Energy production and conversion] | Back alignment and domain information |
|---|
| >PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed | Back alignment and domain information |
|---|
| >TIGR01660 narH nitrate reductase, beta subunit | Back alignment and domain information |
|---|
| >CHL00014 ndhI NADH dehydrogenase subunit I | Back alignment and domain information |
|---|
| >PRK02651 photosystem I subunit VII; Provisional | Back alignment and domain information |
|---|
| >TIGR02066 dsrB sulfite reductase, dissimilatory-type beta subunit | Back alignment and domain information |
|---|
| >PRK09477 napH quinol dehydrogenase membrane component; Provisional | Back alignment and domain information |
|---|
| >COG0437 HybA Fe-S-cluster-containing hydrogenase components 1 [Energy production and conversion] | Back alignment and domain information |
|---|
| >PF12800 Fer4_4: 4Fe-4S binding domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters | Back alignment and domain information |
|---|
| >TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit | Back alignment and domain information |
|---|
| >PRK10194 ferredoxin-type protein; Provisional | Back alignment and domain information |
|---|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
| >TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein | Back alignment and domain information |
|---|
| >PRK15449 ferredoxin-like protein FixX; Provisional | Back alignment and domain information |
|---|
| >TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family | Back alignment and domain information |
|---|
| >COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion] | Back alignment and domain information |
|---|
| >PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional | Back alignment and domain information |
|---|
| >TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein | Back alignment and domain information |
|---|
| >TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein | Back alignment and domain information |
|---|
| >COG1143 NuoI Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Energy production and conversion] | Back alignment and domain information |
|---|
| >PRK07118 ferredoxin; Validated | Back alignment and domain information |
|---|
| >COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion] | Back alignment and domain information |
|---|
| >PRK10194 ferredoxin-type protein; Provisional | Back alignment and domain information |
|---|
| >PF13237 Fer4_10: 4Fe-4S dicluster domain; PDB: 2FGO_A | Back alignment and domain information |
|---|
| >TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric | Back alignment and domain information |
|---|
| >TIGR00397 mauM_napG MauM/NapG family ferredoxin-type protein | Back alignment and domain information |
|---|
| >PRK14993 tetrathionate reductase subunit B; Provisional | Back alignment and domain information |
|---|
| >PRK09898 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK09626 oorD 2-oxoglutarate-acceptor oxidoreductase subunit OorD; Reviewed | Back alignment and domain information |
|---|
| >COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion] | Back alignment and domain information |
|---|
| >TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing | Back alignment and domain information |
|---|
| >PRK07118 ferredoxin; Validated | Back alignment and domain information |
|---|
| >PRK09476 napG quinol dehydrogenase periplasmic component; Provisional | Back alignment and domain information |
|---|
| >COG1145 NapF Ferredoxin [Energy production and conversion] | Back alignment and domain information |
|---|
| >PRK08348 NADH-plastoquinone oxidoreductase subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
| >PRK09476 napG quinol dehydrogenase periplasmic component; Provisional | Back alignment and domain information |
|---|
| >TIGR02936 fdxN_nitrog ferredoxin III, nif-specific | Back alignment and domain information |
|---|
| >PRK13795 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PF13746 Fer4_18: 4Fe-4S dicluster domain | Back alignment and domain information |
|---|
| >PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional | Back alignment and domain information |
|---|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
| >cd07030 RNAP_D D subunit of Archaeal RNA polymerase | Back alignment and domain information |
|---|
| >PRK10330 formate dehydrogenase-H ferredoxin subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR00273 iron-sulfur cluster-binding protein | Back alignment and domain information |
|---|
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
| >PF13187 Fer4_9: 4Fe-4S dicluster domain; PDB: 2WSF_C 2WSE_C 2O01_C 2WSC_C 3LW5_C 2VKR_C 1KQG_B 1KQF_B 3GYX_J | Back alignment and domain information |
|---|
| >TIGR03287 methan_mark_16 putative methanogenesis marker 16 metalloprotein | Back alignment and domain information |
|---|
| >PRK09898 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK10882 hydrogenase 2 protein HybA; Provisional | Back alignment and domain information |
|---|
| >PF12838 Fer4_7: 4Fe-4S dicluster domain; InterPro: IPR001450 This superfamily includes proteins containing domains which bind to iron-sulphur clusters | Back alignment and domain information |
|---|
| >PRK09326 F420H2 dehydrogenase subunit F; Provisional | Back alignment and domain information |
|---|
| >KOG0063|consensus | Back alignment and domain information |
|---|
| >PF13484 Fer4_16: 4Fe-4S double cluster binding domain | Back alignment and domain information |
|---|
| >PRK10882 hydrogenase 2 protein HybA; Provisional | Back alignment and domain information |
|---|
| >PRK08222 hydrogenase 4 subunit H; Validated | Back alignment and domain information |
|---|
| >TIGR03149 cyt_nit_nrfC cytochrome c nitrite reductase, Fe-S protein | Back alignment and domain information |
|---|
| >CHL00065 psaC photosystem I subunit VII | Back alignment and domain information |
|---|
| >TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma | Back alignment and domain information |
|---|
| >PF13484 Fer4_16: 4Fe-4S double cluster binding domain | Back alignment and domain information |
|---|
| >PRK14993 tetrathionate reductase subunit B; Provisional | Back alignment and domain information |
|---|
| >PLN00071 photosystem I subunit VII; Provisional | Back alignment and domain information |
|---|
| >TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit | Back alignment and domain information |
|---|
| >cd01916 ACS_1 Acetyl-CoA synthase (ACS), also known as acetyl-CoA decarbonylase, is found in acetogenic and methanogenic organisms and is responsible for the synthesis and breakdown of acetyl-CoA | Back alignment and domain information |
|---|
| >TIGR02179 PorD_KorD 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family | Back alignment and domain information |
|---|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
| >TIGR00403 ndhI NADH-plastoquinone oxidoreductase subunit I protein | Back alignment and domain information |
|---|
| >PRK06273 ferredoxin; Provisional | Back alignment and domain information |
|---|
| >PRK00783 DNA-directed RNA polymerase subunit D; Provisional | Back alignment and domain information |
|---|
| >PRK12387 formate hydrogenlyase complex iron-sulfur subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR03048 PS_I_psaC photosystem I iron-sulfur protein PsaC | Back alignment and domain information |
|---|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
| >PF13459 Fer4_15: 4Fe-4S single cluster domain | Back alignment and domain information |
|---|
| >TIGR02745 ccoG_rdxA_fixG cytochrome c oxidase accessory protein FixG | Back alignment and domain information |
|---|
| >COG1141 Fer Ferredoxin [Energy production and conversion] | Back alignment and domain information |
|---|
| >CHL00014 ndhI NADH dehydrogenase subunit I | Back alignment and domain information |
|---|
| >TIGR02064 dsrA sulfite reductase, dissimilatory-type alpha subunit | Back alignment and domain information |
|---|
| >COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion] | Back alignment and domain information |
|---|
| >TIGR02951 DMSO_dmsB DMSO reductase, iron-sulfur subunit | Back alignment and domain information |
|---|
| >PRK09625 porD pyruvate flavodoxin oxidoreductase subunit delta; Reviewed | Back alignment and domain information |
|---|
| >TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit | Back alignment and domain information |
|---|
| >PRK02651 photosystem I subunit VII; Provisional | Back alignment and domain information |
|---|
| >PRK05888 NADH dehydrogenase subunit I; Provisional | Back alignment and domain information |
|---|
| >TIGR02494 PFLE_PFLC glycyl-radical enzyme activating protein family | Back alignment and domain information |
|---|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK00941 acetyl-CoA decarbonylase/synthase complex subunit alpha; Validated | Back alignment and domain information |
|---|
| >TIGR01971 NuoI NADH-quinone oxidoreductase, chain I | Back alignment and domain information |
|---|
| >TIGR00314 cdhA CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit | Back alignment and domain information |
|---|
| >TIGR03278 methan_mark_10 putative methanogenesis marker protein 10 | Back alignment and domain information |
|---|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
| >PRK06991 ferredoxin; Provisional | Back alignment and domain information |
|---|
| >COG2878 Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Energy production and conversion] | Back alignment and domain information |
|---|
| >PF13247 Fer4_11: 4Fe-4S dicluster domain; PDB: 2VPY_F 2VPX_B 2VPZ_B 2VPW_F 3IR7_B 1Y5N_B 1R27_D 3EGW_B 1Y5I_B 1Q16_B | Back alignment and domain information |
|---|
| >TIGR02512 Fe_only_hydrog hydrogenases, Fe-only | Back alignment and domain information |
|---|
| >PF13370 Fer4_13: 4Fe-4S single cluster domain; PDB: 1FXR_A 1DAX_A 1DFD_A 1WTF_A 1IR0_A 1IQZ_A 1SIZ_A 1SJ1_A 3PNI_B 2Z8Q_A | Back alignment and domain information |
|---|
| >PRK09624 porD pyuvate ferredoxin oxidoreductase subunit delta; Reviewed | Back alignment and domain information |
|---|
| >TIGR03478 DMSO_red_II_bet DMSO reductase family type II enzyme, iron-sulfur subunit | Back alignment and domain information |
|---|
| >PRK05113 electron transport complex protein RnfB; Provisional | Back alignment and domain information |
|---|
| >TIGR01944 rnfB electron transport complex, RnfABCDGE type, B subunit | Back alignment and domain information |
|---|
| >PRK09623 vorD 2-ketoisovalerate ferredoxin oxidoreductase subunit delta; Reviewed | Back alignment and domain information |
|---|
| >PRK05035 electron transport complex protein RnfC; Provisional | Back alignment and domain information |
|---|
| >COG0247 GlpC Fe-S oxidoreductase [Energy production and conversion] | Back alignment and domain information |
|---|
| >COG1139 Uncharacterized conserved protein containing a ferredoxin-like domain [Energy production and conversion] | Back alignment and domain information |
|---|
| >TIGR02060 aprB adenosine phosphosulphate reductase, beta subunit | Back alignment and domain information |
|---|
| >COG2768 Uncharacterized Fe-S center protein [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR01945 rnfC electron transport complex, RnfABCDGE type, C subunit | Back alignment and domain information |
|---|
| >PRK09326 F420H2 dehydrogenase subunit F; Provisional | Back alignment and domain information |
|---|
| >TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein | Back alignment and domain information |
|---|
| >TIGR00402 napF ferredoxin-type protein NapF | Back alignment and domain information |
|---|
| >COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion] | Back alignment and domain information |
|---|
| >TIGR01582 FDH-beta formate dehydrogenase, beta subunit, Fe-S containing | Back alignment and domain information |
|---|
| >TIGR02700 flavo_MJ0208 archaeoflavoprotein, MJ0208 family | Back alignment and domain information |
|---|
| >PRK14028 pyruvate ferredoxin oxidoreductase subunit gamma/delta; Provisional | Back alignment and domain information |
|---|
| >PF13183 Fer4_8: 4Fe-4S dicluster domain; PDB: 2BS4_B 1E7P_B 2BS3_B 1QLB_B 2BS2_B 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N | Back alignment and domain information |
|---|
| >PRK08764 ferredoxin; Provisional | Back alignment and domain information |
|---|
| >COG2221 DsrA Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Energy production and conversion] | Back alignment and domain information |
|---|
| >TIGR02910 sulfite_red_A sulfite reductase, subunit A | Back alignment and domain information |
|---|
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
| >TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric | Back alignment and domain information |
|---|
| >PRK11168 glpC sn-glycerol-3-phosphate dehydrogenase subunit C; Provisional | Back alignment and domain information |
|---|
| >KOG3256|consensus | Back alignment and domain information |
|---|
| >PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional | Back alignment and domain information |
|---|
| >COG1146 Ferredoxin [Energy production and conversion] | Back alignment and domain information |
|---|
| >PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional | Back alignment and domain information |
|---|
| >COG2440 FixX Ferredoxin-like protein [Energy production and conversion] | Back alignment and domain information |
|---|
| >TIGR03294 FrhG coenzyme F420 hydrogenase, subunit gamma | Back alignment and domain information |
|---|
| >PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated | Back alignment and domain information |
|---|
| >COG1453 Predicted oxidoreductases of the aldo/keto reductase family [General function prediction only] | Back alignment and domain information |
|---|
| >PF13534 Fer4_17: 4Fe-4S dicluster domain; PDB: 1ZOY_B 3AE9_B 3AED_B 3AEA_B 3AE1_B 3SFD_B 3ABV_B 3AEF_B 3AEB_B 3AE3_B | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 477 | ||||
| 1feh_A | 574 | Fe-Only Hydrogenase From Clostridium Pasteurianum L | 1e-33 | ||
| 1hfe_L | 421 | 1.6 A Resolution Structure Of The Fe-Only Hydrogena | 9e-22 | ||
| 1e08_A | 371 | Structural Model Of The [fe]-HydrogenaseCYTOCHROME | 1e-21 | ||
| 3lx4_A | 457 | Stepwise [fefe]-Hydrogenase H-Cluster Assembly Reve | 4e-17 | ||
| 3lx4_A | 457 | Stepwise [fefe]-Hydrogenase H-Cluster Assembly Reve | 7e-14 |
| >pdb|1FEH|A Chain A, Fe-Only Hydrogenase From Clostridium Pasteurianum Length = 574 | Back alignment and structure |
|
| >pdb|1HFE|L Chain L, 1.6 A Resolution Structure Of The Fe-Only Hydrogenase From Desulfovibrio Desulfuricans Length = 421 | Back alignment and structure |
| >pdb|1E08|A Chain A, Structural Model Of The [fe]-HydrogenaseCYTOCHROME C553 Complex Combining Nmr And Soft-Docking Length = 371 | Back alignment and structure |
| >pdb|3LX4|A Chain A, Stepwise [fefe]-Hydrogenase H-Cluster Assembly Revealed In The Structure Of Hyda(Deltaefg) Length = 457 | Back alignment and structure |
| >pdb|3LX4|A Chain A, Stepwise [fefe]-Hydrogenase H-Cluster Assembly Revealed In The Structure Of Hyda(Deltaefg) Length = 457 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A* Length = 421 | Back alignment and structure |
|---|
Score = 354 bits (910), Expect = e-119
Identities = 102/395 (25%), Positives = 158/395 (40%), Gaps = 31/395 (7%)
Query: 51 YIQETNGREEKLKKVEISLTDCLACSGCITSA-ESVLITQQSH-EEVMKVIRENNAHKAS 108
E + C+ C C+T E+ + QS EV K +++
Sbjct: 47 TAAIFGEMGEP--HSIPHIEACINCGQCLTHCPENAIYEAQSWVPEVEKKLKDGK----- 99
Query: 109 SNENTKTIVLSLAIQPVLSLGAKFALSHEQVVA-KLCGFFKRLGVDLVLDVGIAHCFSLV 167
+ A +LG F + V K+ ++LG D ++
Sbjct: 100 -----VKCIAMPAPAVRYALGDAFGMPVGSVTTGKMLAALQKLGFAHCWDTEFTADVTIW 154
Query: 168 ELENEFLDRFLSGGG---PLFTSECPGWVCYAEKSHGEFILPYISRVKSPQQVMGSLIKT 224
E +EF++R P FTS CPGW YAE + E LP+ S KSP + G+L KT
Sbjct: 155 EEGSEFVERLTKKSDMPLPQFTSCCPGWQKYAETYYPEL-LPHFSTCKSPIGMNGALAKT 213
Query: 225 HLAEKLGVHPSHIYHVTLMPCYDKKLEASRADFYNEELGYRDVDCVITAVELEVLL-ANE 283
+ AE++ P +Y V++MPC KK E R + + G RD+D +T EL ++
Sbjct: 214 YGAERMKYDPKQVYTVSIMPCIAKKYEGLRPELKSS--GMRDIDATLTTRELAYMIKKAG 271
Query: 284 LATTTLQEEKDGILDWPWDEHNPHRMLLVNGTGSGGYAHNVLSHAIRQLCPGESPVVEFK 343
+ L + K D E +GG L A + + +FK
Sbjct: 272 IDFAKLPDGK---RDSLMGESTGGA---TIFGVTGGVMEAALRFAYEAVTGKKPDSWDFK 325
Query: 344 PLRNPD-IREATFTCGDVTLRFCIANGFRNIQNLIQKLKRKRLPYDFIEIMACPSGCLNG 402
+R D I+EAT G ++ + +G + + + +K + PY FIE MACP GC+ G
Sbjct: 326 AVRGLDGIKEATVNVGGTDVKVAVVHGAKRFKQVCDDVKAGKSPYHFIEYMACPGGCVCG 385
Query: 403 GAQIRNEKVASPKETALELETILCDLAKSEPRENA 437
G Q V + + L K +A
Sbjct: 386 GGQPVMPGVLEAMDRTTTR--LYAGLKKRLAMASA 418
|
| >3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A* Length = 574 | Back alignment and structure |
|---|
| >3lx4_A Fe-hydrogenase; HYDA, H-cluster, [4Fe-4S] cluster, IR cluster, insertion, biosynthesis, maturation, intermediate, evolution; 1.97A {Chlamydomonas reinhardtii} Length = 457 | Back alignment and structure |
|---|
| >1hfe_S Protein (Fe-only hydrogenase (E.C.1.18.99.1) (smaller subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: a.137.4.1 PDB: 1e08_D* 1gx7_D* Length = 123 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 477 | |||
| 3lx4_A | 457 | Fe-hydrogenase; HYDA, H-cluster, [4Fe-4S] cluster, | 100.0 | |
| 3c8y_A | 574 | Iron hydrogenase 1; dithiomethylether, H-cluster, | 100.0 | |
| 1hfe_L | 421 | Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larg | 100.0 | |
| 1q16_B | 512 | Respiratory nitrate reductase 1 beta chain; membra | 99.95 | |
| 1hfe_S | 123 | Protein (Fe-only hydrogenase (E.C.1.18.99.1) (smal | 99.77 | |
| 2ivf_B | 352 | Ethylbenzene dehydrogenase beta-subunit; anaerobic | 97.95 | |
| 1ti6_B | 274 | Pyrogallol hydroxytransferase small subunit; molyb | 97.85 | |
| 1kqf_B | 294 | FDH-N beta S, formate dehydrogenase, nitrate-induc | 97.78 | |
| 1bc6_A | 77 | 7-Fe ferredoxin; electron transport, iron-sulfur; | 97.77 | |
| 3eun_A | 82 | Ferredoxin; electron transport, [4Fe-4S] cluster, | 97.68 | |
| 1rgv_A | 80 | Ferredoxin; electron transport; 2.90A {Thauera aro | 97.63 | |
| 2fgo_A | 82 | Ferredoxin; allochromatium vinosum, [4Fe-4S] clust | 97.59 | |
| 1h98_A | 78 | Ferredoxin; electron transport, thermophilic, iron | 97.47 | |
| 7fd1_A | 106 | FD1, protein (7-Fe ferredoxin I); electron transpo | 97.47 | |
| 3i9v_3 | 783 | NADH-quinone oxidoreductase subunit 3; electron tr | 97.42 | |
| 2fdn_A | 55 | Ferredoxin; electron transport, iron-sulfur, 4Fe-4 | 97.41 | |
| 2zvs_A | 85 | Uncharacterized ferredoxin-like protein YFHL; elec | 97.37 | |
| 1xer_A | 103 | Ferredoxin; electron transport, iron-sulfur, dupli | 97.35 | |
| 3i9v_9 | 182 | NADH-quinone oxidoreductase subunit 9; electron tr | 97.32 | |
| 2v2k_A | 105 | Ferredoxin; iron, transport, iron-sulfur, mycobact | 97.24 | |
| 1f2g_A | 58 | Ferredoxin II; electron transport, FDII desulfovib | 97.19 | |
| 1dax_A | 64 | Ferredoxin I; electron transport, electron-transfe | 97.16 | |
| 1dwl_A | 59 | Ferredoxin I; electron transfer, model, heteronucl | 97.09 | |
| 1jnr_B | 150 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 97.02 | |
| 1rof_A | 60 | Ferredoxin; electron transport, iron-sulfur; NMR { | 96.95 | |
| 1jb0_C | 80 | Photosystem I iron-sulfur center; membrane protein | 96.9 | |
| 3gyx_B | 166 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 96.88 | |
| 1iqz_A | 81 | Ferredoxin; iron-sulfer protein, ultlahigh resolut | 96.86 | |
| 2c42_A | 1231 | Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, | 96.71 | |
| 3mm5_B | 366 | Sulfite reductase, dissimilatory-type subunit BET; | 96.5 | |
| 3or1_B | 386 | Sulfite reductase beta; dissimilatory sulfite redu | 96.26 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 96.22 | |
| 1sj1_A | 66 | Ferredoxin; thermostability, iron-sulfur cluster, | 96.17 | |
| 3mm5_A | 418 | Sulfite reductase, dissimilatory-type subunit ALP; | 96.16 | |
| 2vpz_B | 195 | NRFC protein; oxidoreductase, molybdopterin guanin | 95.89 | |
| 2ivf_B | 352 | Ethylbenzene dehydrogenase beta-subunit; anaerobic | 95.71 | |
| 1q16_B | 512 | Respiratory nitrate reductase 1 beta chain; membra | 95.69 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 95.59 | |
| 1ti6_B | 274 | Pyrogallol hydroxytransferase small subunit; molyb | 95.57 | |
| 1rgv_A | 80 | Ferredoxin; electron transport; 2.90A {Thauera aro | 95.34 | |
| 3eun_A | 82 | Ferredoxin; electron transport, [4Fe-4S] cluster, | 95.32 | |
| 2fgo_A | 82 | Ferredoxin; allochromatium vinosum, [4Fe-4S] clust | 95.23 | |
| 2zvs_A | 85 | Uncharacterized ferredoxin-like protein YFHL; elec | 95.21 | |
| 1dax_A | 64 | Ferredoxin I; electron transport, electron-transfe | 95.15 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 95.11 | |
| 1kqf_B | 294 | FDH-N beta S, formate dehydrogenase, nitrate-induc | 95.07 | |
| 3or1_A | 437 | Sulfite reductase alpha; dissimilatory sulfite red | 94.9 | |
| 1xer_A | 103 | Ferredoxin; electron transport, iron-sulfur, dupli | 94.87 | |
| 2fdn_A | 55 | Ferredoxin; electron transport, iron-sulfur, 4Fe-4 | 94.78 | |
| 1jb0_C | 80 | Photosystem I iron-sulfur center; membrane protein | 94.76 | |
| 1iqz_A | 81 | Ferredoxin; iron-sulfer protein, ultlahigh resolut | 94.63 | |
| 1f2g_A | 58 | Ferredoxin II; electron transport, FDII desulfovib | 94.4 | |
| 1dwl_A | 59 | Ferredoxin I; electron transfer, model, heteronucl | 94.02 | |
| 1sj1_A | 66 | Ferredoxin; thermostability, iron-sulfur cluster, | 94.01 | |
| 1h0h_B | 214 | Formate dehydrogenase (small subunit); tungsten se | 93.93 | |
| 1rof_A | 60 | Ferredoxin; electron transport, iron-sulfur; NMR { | 93.78 | |
| 1bc6_A | 77 | 7-Fe ferredoxin; electron transport, iron-sulfur; | 93.67 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 93.63 | |
| 1h98_A | 78 | Ferredoxin; electron transport, thermophilic, iron | 93.24 | |
| 2pa8_D | 265 | DNA-directed RNA polymerase subunit D; ferredoxin- | 93.21 | |
| 7fd1_A | 106 | FD1, protein (7-Fe ferredoxin I); electron transpo | 93.04 | |
| 2vpz_B | 195 | NRFC protein; oxidoreductase, molybdopterin guanin | 92.76 | |
| 1h0h_B | 214 | Formate dehydrogenase (small subunit); tungsten se | 92.68 | |
| 3i9v_9 | 182 | NADH-quinone oxidoreductase subunit 9; electron tr | 92.68 | |
| 2v2k_A | 105 | Ferredoxin; iron, transport, iron-sulfur, mycobact | 92.21 | |
| 3gyx_B | 166 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 91.74 | |
| 1jnr_B | 150 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 91.23 | |
| 1hfe_L | 421 | Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larg | 91.13 | |
| 3cf4_A | 807 | Acetyl-COA decarboxylase/synthase alpha subunit; m | 90.87 | |
| 2wdq_B | 238 | Succinate dehydrogenase iron-sulfur subunit; succi | 87.18 | |
| 2c42_A | 1231 | Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, | 86.26 | |
| 1kf6_B | 243 | Fumarate reductase iron-sulfur protein; respiratio | 85.39 | |
| 1kf6_B | 243 | Fumarate reductase iron-sulfur protein; respiratio | 83.08 | |
| 2wdq_B | 238 | Succinate dehydrogenase iron-sulfur subunit; succi | 81.21 | |
| 3c8y_A | 574 | Iron hydrogenase 1; dithiomethylether, H-cluster, | 80.52 |
| >3lx4_A Fe-hydrogenase; HYDA, H-cluster, [4Fe-4S] cluster, IR cluster, insertion, biosynthesis, maturation, intermediate, evolution; 1.97A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-100 Score=785.89 Aligned_cols=360 Identities=31% Similarity=0.496 Sum_probs=326.3
Q ss_pred HHHHHHHHhhhccccCCCCC-----cEEEEEecccchhhhhhhcCCCHHH-HHHHHHHHHHHcCCcEEEECccchhhhHH
Q psy3876 94 EVMKVIRENNAHKASSNENT-----KTIVLSLAIQPVLSLGAKFALSHEQ-VVAKLCGFFKRLGVDLVLDVGIAHCFSLV 167 (477)
Q Consensus 94 ~~~~~l~~~~~~~~~~~~~~-----~~~vvsisP~~~~sl~~~f~l~~~~-~~~~l~~~Lk~lGf~~V~Dt~~~ad~~~~ 167 (477)
++.++++.|++ ++ +.+||++|||+|+||+++||++++. ++++|+.+||+|||++||||++|||++++
T Consensus 27 ~~~~v~~aL~~-------~~~~~~~k~vVasvAPavrasl~~~FGl~~~~~t~gkl~~aLk~LGFd~VfDta~gADlti~ 99 (457)
T 3lx4_A 27 HVQQALAELAK-------PKDDPTRKHVCVQVAPAVRVAIAETLGLAPGATTPKQLAEGLRRLGFDEVFDTLFGADLTIM 99 (457)
T ss_dssp HHHHHHHHHHS-------CTTCTTCCEEEEEECHHHHHHGGGGGTCCTTCSCHHHHHHHHHHTTCSEEEETHHHHHHHHH
T ss_pred hHHHHHHHHhC-------cCcccCCceEEEEECcHHHHHHHHHhCCCcccccHHHHHHHHHHcCCCEEEEcHHHHHHHHH
Confidence 77788888763 23 7999999999999999999998765 58999999999999999999999999999
Q ss_pred HHHHHHHHHhh--------c-CCCCcccccChhHHHHHHHhcCCCccCCCCCCCCHHHHHHHHHHHHhHHhhCCCCCcEE
Q psy3876 168 ELENEFLDRFL--------S-GGGPLFTSECPGWVCYAEKSHGEFILPYISRVKSPQQVMGSLIKTHLAEKLGVHPSHIY 238 (477)
Q Consensus 168 e~~~e~~~~~~--------~-~~~p~itS~CP~~V~yiEk~~p~~Lip~ls~v~SP~~~~g~~iK~~~~~~~~~~~~~i~ 238 (477)
|++.||++|++ + .++|||||||||||+||||+||+ |+||||+++|||||+|+++|+||+++.|++|++|+
T Consensus 100 EEa~Ef~~r~~~~l~~~~~~~~~lPmiTScCPgWV~yiEk~yPe-Llp~LSt~kSPqqm~G~liK~y~a~~~gi~p~~i~ 178 (457)
T 3lx4_A 100 EEGSELLHRLTEHLEAHPHSDEPLPMFTSCCPGWIAMLEKSYPD-LIPYVSSCKSPQMMLAAMVKSYLAEKKGIAPKDMV 178 (457)
T ss_dssp HHHHHHHHHHHHHHCC-----CCSSEECCCCHHHHHHHHHHCGG-GGGGBCCBCCHHHHHHHHHHHHHHHHHTCCGGGEE
T ss_pred HHHHHHHHHHHhhhccccccCCCCceEecCCHHHHHHHHHhCcc-cccccCCCCCHHHHHHHHHHHHHHHhcCCCcccEE
Confidence 99999999983 2 26899999999999999999999 89999999999999999999999999999999999
Q ss_pred EEEEEccccchhhhhcccccc-cccCCCCccEEeCHHHHHHHHHhcCCCCCCCcCCCCCCCCCCCCCCccccccccccCc
Q psy3876 239 HVTLMPCYDKKLEASRADFYN-EELGYRDVDCVITAVELEVLLANELATTTLQEEKDGILDWPWDEHNPHRMLLVNGTGS 317 (477)
Q Consensus 239 ~V~I~PC~aKK~Ea~r~~~~~-~~~~~~~VD~VLT~~El~~~l~~~~i~~~~~~~~~~~~d~~~~~~s~~~~~~~~~~~s 317 (477)
|||||||+|||+||.|+++.. ...+.++||+||||+||.+||++.+| ++.++++.++|.+++..+++ +++||.|
T Consensus 179 vV~ImPC~AKK~EA~R~e~~~~~~~g~~dVD~VLTtrEL~~mik~~gI--d~~~l~~~~~D~p~g~~sga---G~iFg~s 253 (457)
T 3lx4_A 179 MVSIMPCTRKQSEADRDWFCVDADPTLRQLDHVITTVELGNIFKERGI--NLAELPEGEWDNPMGVGSGA---GVLFGTT 253 (457)
T ss_dssp EEEEESCSSHHHHHTCTTCBCC---CCBSSCEEEEHHHHHHHHHHTTC--CGGGSCCCCCCCTTSSSSSC---SCCSSBC
T ss_pred EEEEEcccchHHHhcCcccccccccCCccccEEeeHHHHHHHHHHcCC--ChhhCCcccccccccccCCC---ceecCCc
Confidence 999999999999999998853 12346799999999999999999999 99999999999999877665 4589999
Q ss_pred hhHHHHHHHHHHHHhCCCCCCCcceeeccCCC-cEEEEEe-C--------------------------------------
Q psy3876 318 GGYAHNVLSHAIRQLCPGESPVVEFKPLRNPD-IREATFT-C-------------------------------------- 357 (477)
Q Consensus 318 GG~~e~v~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~l~-~-------------------------------------- 357 (477)
|||+|||+|++++.++|.+++.++|+.+||.| ++++++. .
T Consensus 254 GGV~EAv~r~a~~~~~g~~~~~~~~~~vrg~~g~kea~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (457)
T 3lx4_A 254 GGVMEAALRTAYELFTGTPLPRLSLSEVRGMDGIKETNITMVPAPGSKFEELLKHRAAARAEAAAHGTPGPLAWDGGAGF 333 (457)
T ss_dssp CCHHHHHHHHHHHHHHSSCCCCCCCEECTTCTTEEEEEEEECCCTTSHHHHHHHHCCC-----------CCSCCCSCEEE
T ss_pred ccHHHHHHHHHHHHhhCCCCccccceeecCCCCceEEEEEeccccccchhhhhhhhhhhhhccccccccccccccccccc
Confidence 99999999999999999999999999999954 9988764 1
Q ss_pred ------CceeEeEEEEeChHHHHHHHHHHHcCCCCCcEEEecCCCccccCCCCcccCCCCCChHHHHHHHHHHHh---hC
Q psy3876 358 ------GDVTLRFCIANGFRNIQNLIQKLKRKRLPYDFIEIMACPSGCLNGGAQIRNEKVASPKETALELETILC---DL 428 (477)
Q Consensus 358 ------g~~~~~~~~v~G~~ni~~ll~~i~~g~~~~~fiEvmACpgGCi~Gggq~~~~~~~~~~~~~~r~~~~~~---~~ 428 (477)
|...+|+|+||||+|++++|++|++|+.+|||||||||||||||||||+++... ..+.+|++.+|. ..
T Consensus 334 ~~~~~~~g~~l~vav~~G~~n~~~ll~~~k~G~~~y~fVEvMACPgGCi~GgGQp~~~~~---~~~~~r~~~ly~~d~~~ 410 (457)
T 3lx4_A 334 TSEDGRGGITLRVAVANGLGNAKKLITKMQAGEAKYDFVEIMACPAGCVGGGGQPRSTDK---AITQKRQAALYNLDEKS 410 (457)
T ss_dssp CCTTCCCEEEEEEEEEESHHHHHHHHHHHHHTSSCCSEEEEESSTTCGGGCTTSCCCSCT---THHHHHHHTSSCHHHHT
T ss_pred ccccCCCCeEEEEEEEcCHHHHHHHHHHHHcCCCCccEEEECCCCccccCCccccccccH---HHHHHHHHHHHHHhhcC
Confidence 567899999999999999999999999999999999999999999999997432 245578888887 57
Q ss_pred CCCCCCCcHHHHHHHHHHhCCCCCcccccceeeeeccccCC
Q psy3876 429 AKSEPRENATLEHLYKAWLGGKSTDKGKHMLNTSYHNIPKN 469 (477)
Q Consensus 429 ~~~~~~~n~~~~~ly~~~l~~~~~~~~~~llht~y~~~~~~ 469 (477)
+++.++|||.+++||++||++|+++++|+||||+|+++++.
T Consensus 411 ~~r~s~eNp~v~~lY~~~l~~p~s~~ah~lLHT~y~~~~~~ 451 (457)
T 3lx4_A 411 TLRRSHENPSIRELYDTYLGEPLGHKAHELLHTHYVAGGVE 451 (457)
T ss_dssp SBCCGGGCHHHHHHHHHTTCSTTSHHHHHHHBCCCCTTCC-
T ss_pred CccCCCcCHHHHHHHHHHhCCCCcHHHHHhcCccccccCcc
Confidence 89999999999999999999999999999999999998764
|
| >3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A* | Back alignment and structure |
|---|
| >1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A* | Back alignment and structure |
|---|
| >1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B* | Back alignment and structure |
|---|
| >1hfe_S Protein (Fe-only hydrogenase (E.C.1.18.99.1) (smaller subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: a.137.4.1 PDB: 1e08_D* 1gx7_D* | Back alignment and structure |
|---|
| >2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum} | Back alignment and structure |
|---|
| >1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N* | Back alignment and structure |
|---|
| >1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B* | Back alignment and structure |
|---|
| >1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A | Back alignment and structure |
|---|
| >3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A | Back alignment and structure |
|---|
| >1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1 | Back alignment and structure |
|---|
| >2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2 | Back alignment and structure |
|---|
| >7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ... | Back alignment and structure |
|---|
| >3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3* | Back alignment and structure |
|---|
| >2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A | Back alignment and structure |
|---|
| >2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli} | Back alignment and structure |
|---|
| >1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A | Back alignment and structure |
|---|
| >3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9* | Back alignment and structure |
|---|
| >2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
| >1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A | Back alignment and structure |
|---|
| >1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A | Back alignment and structure |
|---|
| >1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1 | Back alignment and structure |
|---|
| >1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B* | Back alignment and structure |
|---|
| >1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A | Back alignment and structure |
|---|
| >1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C* | Back alignment and structure |
|---|
| >3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
| >1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A* | Back alignment and structure |
|---|
| >2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* | Back alignment and structure |
|---|
| >3mm5_B Sulfite reductase, dissimilatory-type subunit BET; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3c7b_B* 3mm6_B* 3mm7_B* 3mm8_B* 3mm9_B* 3mma_B* 3mmb_B* 3mmc_B* | Back alignment and structure |
|---|
| >3or1_B Sulfite reductase beta; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_B* 2v4j_B* 2xsj_B* | Back alignment and structure |
|---|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A | Back alignment and structure |
|---|
| >3mm5_A Sulfite reductase, dissimilatory-type subunit ALP; alpha-beta-protein, oxidoreductase; HET: SRM; 1.80A {Archaeoglobus fulgidus} PDB: 3mm6_A* 3mm7_A* 3mm8_A* 3mm9_A* 3mma_A* 3mmb_A* 3mmc_A* 3c7b_A* | Back alignment and structure |
|---|
| >2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B* | Back alignment and structure |
|---|
| >2ivf_B Ethylbenzene dehydrogenase beta-subunit; anaerobic hydrocarbon degradation, MOCO, Fe/S cluster, MO- B enzyme, DMSO reductase family; HET: MES MGD MD1 HEM; 1.88A {Aromatoleum aromaticum} | Back alignment and structure |
|---|
| >1q16_B Respiratory nitrate reductase 1 beta chain; membrane protein, electron-transfer, oxidoreductase; HET: FME MD1 HEM AGA 3PH; 1.90A {Escherichia coli} SCOP: d.58.1.5 PDB: 1r27_B* 1siw_B* 1y5i_B* 1y5l_B* 1y5n_B* 3ir5_B* 3ir6_B* 3ir7_B* 1y4z_B* 3egw_B* | Back alignment and structure |
|---|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
| >1ti6_B Pyrogallol hydroxytransferase small subunit; molybdenum binding enzyme, MGD-cofactors, DMSO-reductase family, 4Fe-4S-cluster; HET: MGD BTT; 2.00A {Pelobacter acidigallici} SCOP: b.3.5.1 d.58.1.5 PDB: 1ti2_B* 1ti4_B* 1vld_N* 1vle_N* 1vlf_N* | Back alignment and structure |
|---|
| >1rgv_A Ferredoxin; electron transport; 2.90A {Thauera aromatica} SCOP: d.58.1.1 | Back alignment and structure |
|---|
| >3eun_A Ferredoxin; electron transport, [4Fe-4S] cluster, 4Fe-4S, iron, iron-sulfur, metal-binding, transport; 1.05A {Allochromatium vinosum} SCOP: d.58.1.1 PDB: 1blu_A 3exy_A | Back alignment and structure |
|---|
| >2fgo_A Ferredoxin; allochromatium vinosum, [4Fe-4S] cluster, reduction potential, iron binding protein electron transport; 1.32A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
| >2zvs_A Uncharacterized ferredoxin-like protein YFHL; electron transport, [4Fe-4S] clusters, iron-SULF clusters, reduction potential; 1.65A {Escherichia coli} | Back alignment and structure |
|---|
| >1dax_A Ferredoxin I; electron transport, electron-transfer protein, 4Fe-4S cluster; NMR {Desulfovibrio africanus} SCOP: d.58.1.4 PDB: 1dfd_A 1fxr_A | Back alignment and structure |
|---|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
| >1kqf_B FDH-N beta S, formate dehydrogenase, nitrate-inducible, iron-SU subunit; oxidoreductase, selenium, selenocysteine, seCys, molybdenum; HET: MGD HEM CDL; 1.60A {Escherichia coli} SCOP: d.58.1.5 f.23.22.1 PDB: 1kqg_B* | Back alignment and structure |
|---|
| >3or1_A Sulfite reductase alpha; dissimilatory sulfite reductase, sulfate reduction, oxidored sulfite reduction; HET: SRM; 1.76A {Desulfovibrio gigas} PDB: 3or2_A* 2v4j_A* 2xsj_A* | Back alignment and structure |
|---|
| >1xer_A Ferredoxin; electron transport, iron-sulfur, duplication; 2.00A {Sulfolobus tokodaii str} SCOP: d.58.1.3 PDB: 2vkr_A | Back alignment and structure |
|---|
| >2fdn_A Ferredoxin; electron transport, iron-sulfur, 4Fe-4S; 0.94A {Clostridium acidurici} SCOP: d.58.1.1 PDB: 1fdn_A 1fca_A 1clf_A 1dur_A | Back alignment and structure |
|---|
| >1jb0_C Photosystem I iron-sulfur center; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: d.58.1.2 PDB: 3pcq_C* 1k0t_A 2wsc_C* 2wse_C* 2wsf_C* 3lw5_C* 2o01_C* | Back alignment and structure |
|---|
| >1iqz_A Ferredoxin; iron-sulfer protein, ultlahigh resolution analysis, geometry of [4Fe-4S] cluster, electron transport; 0.92A {Bacillus thermoproteolyticus} SCOP: d.58.1.4 PDB: 1ir0_A 1wtf_A* | Back alignment and structure |
|---|
| >1f2g_A Ferredoxin II; electron transport, FDII desulfovibrio gigas; NMR {Desulfovibrio gigas} SCOP: d.58.1.4 PDB: 1fxd_A | Back alignment and structure |
|---|
| >1dwl_A Ferredoxin I; electron transfer, model, heteronuclear docking; HET: HEC; NMR {Desulfomicrobium norvegicum} SCOP: i.4.1.1 | Back alignment and structure |
|---|
| >1sj1_A Ferredoxin; thermostability, iron-sulfur cluster, hexammine cobalt(III), electron transport; HET: NCO; 1.50A {Pyrococcus furiosus} SCOP: d.58.1.4 PDB: 1siz_A* 2z8q_A 3pni_A | Back alignment and structure |
|---|
| >1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5 | Back alignment and structure |
|---|
| >1rof_A Ferredoxin; electron transport, iron-sulfur; NMR {Thermotoga maritima} SCOP: d.58.1.4 PDB: 1vjw_A | Back alignment and structure |
|---|
| >1bc6_A 7-Fe ferredoxin; electron transport, iron-sulfur; NMR {Bacillus schlegelii} SCOP: d.58.1.2 PDB: 1bd6_A 1bqx_A 1bwe_A | Back alignment and structure |
|---|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
| >1h98_A Ferredoxin; electron transport, thermophilic, iron-sulfur, azotobacter, hydrogen bonds, stability, high resolution; 1.64A {Thermus aquaticus} SCOP: d.58.1.2 | Back alignment and structure |
|---|
| >2pa8_D DNA-directed RNA polymerase subunit D; ferredoxin-like Fe-S binding motif, platform for RNA polymer assembly, transferase; 1.76A {Sulfolobus solfataricus} PDB: 2pmz_D 3hkz_D 2waq_D 2wb1_D 2y0s_D | Back alignment and structure |
|---|
| >7fd1_A FD1, protein (7-Fe ferredoxin I); electron transport, iron-sulfur; 1.30A {Azotobacter vinelandii} SCOP: d.58.1.2 PDB: 1fda_A 1fdb_A 1fer_A 1axq_A 5fd1_A 6fdr_A 6fd1_A 7fdr_A 1frh_A 1fri_A 1fdd_A 1frl_A 1d3w_A 1frm_A 1frx_A 1g6b_A 1pc4_A 1frj_A 2fd2_A 1fd2_A ... | Back alignment and structure |
|---|
| >2vpz_B NRFC protein; oxidoreductase, molybdopterin guanine dinucleotide, iron-sulfur, metal-binding, molybdopterin; HET: MGD; 2.40A {Thermus thermophilus} PDB: 2vpx_B* 2vpw_B* 2vpy_B* | Back alignment and structure |
|---|
| >1h0h_B Formate dehydrogenase (small subunit); tungsten selenium formate dehydrogenase, selenocysteine, molybdopterin, MGD, iron-sulphur cluster; HET: 2MD MGD EPE; 1.8A {Desulfovibrio gigas} SCOP: d.58.1.5 | Back alignment and structure |
|---|
| >3i9v_9 NADH-quinone oxidoreductase subunit 9; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_8* 2fug_9* 3iam_9* 3ias_9* 3m9s_9* | Back alignment and structure |
|---|
| >2v2k_A Ferredoxin; iron, transport, iron-sulfur, mycobacterium tuberculosis, Fe cluster, metal-binding, electron transfer, transport; 1.6A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
| >3gyx_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
| >1jnr_B Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.1.5 PDB: 1jnz_B* 2fja_B* 2fjb_B* 2fjd_B* 2fje_B* | Back alignment and structure |
|---|
| >1hfe_L Protein (Fe-only hydrogenase (E.C.1.18.99.1) (larger subunit)); hydrogene metabolism, periplasm; 1.60A {Desulfovibrio vulgaris subsp} SCOP: c.96.1.1 d.58.1.5 PDB: 1e08_A* 1gx7_A* | Back alignment and structure |
|---|
| >3cf4_A Acetyl-COA decarboxylase/synthase alpha subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri} | Back alignment and structure |
|---|
| >2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B* | Back alignment and structure |
|---|
| >2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* | Back alignment and structure |
|---|
| >1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B* | Back alignment and structure |
|---|
| >1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B* | Back alignment and structure |
|---|
| >2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B* | Back alignment and structure |
|---|
| >3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 477 | ||||
| d3c8ya1 | 365 | c.96.1.1 (A:210-574) Fe-only hydrogenase, catalyti | 5e-95 | |
| d1hfel1 | 312 | c.96.1.1 (L:87-398) Fe-only hydrogenase larger sub | 3e-90 | |
| d1y5ib1 | 509 | d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 | 3e-07 | |
| d1hfes_ | 88 | a.137.4.1 (S:) Fe-only hydrogenase smaller subunit | 8e-04 |
| >d3c8ya1 c.96.1.1 (A:210-574) Fe-only hydrogenase, catalytic domain {Clostridium pasteurianum [TaxId: 1501]} Length = 365 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Fe-only hydrogenase superfamily: Fe-only hydrogenase family: Fe-only hydrogenase domain: Fe-only hydrogenase, catalytic domain species: Clostridium pasteurianum [TaxId: 1501]
Score = 289 bits (741), Expect = 5e-95
Identities = 104/362 (28%), Positives = 163/362 (45%), Gaps = 16/362 (4%)
Query: 110 NENTKTIVLSLAIQPVLSLGAKFALSHEQVVA-KLCGFFKRLGVDLVLDVGIAHCFSLVE 168
N K +++++A S+G F + V K+ ++LG D + D+ +++E
Sbjct: 10 NAPEKHVIVAMAPSVRASIGELFNMGFGVDVTGKIYTALRQLGFDKIFDINFGADMTIME 69
Query: 169 LENEFLDRFLSGG-GPLFTSECPGWVCYAEKSHGEFILPYISRVKSPQQVMGSLIKTHLA 227
E + R + G P+FTS CPGWV AE + E + +S KSPQQ+ G+ KT+
Sbjct: 70 EATELVQRIENNGPFPMFTSCCPGWVRQAENYYPELL-NNLSSAKSPQQIFGTASKTYYP 128
Query: 228 EKLGVHPSHIYHVTLMPCYDKKLEASRADFYNEELGYRDVDCVITAVELEVLLANELATT 287
G+ P +++ VT+MPC KK EA R + G RD+D VIT EL ++ + A
Sbjct: 129 SISGLDPKNVFTVTVMPCTSKKFEADRPQMEKD--GLRDIDAVITTRELAKMI--KDAKI 184
Query: 288 TLQEEKDGILDWPWDEHNPHRMLLVNGTGSGGYAHNVLSHAIRQLCPGESPVVEFKPLRN 347
+ +D D E++ +GG L A E +E+K +R
Sbjct: 185 PFAKLEDSEADPAMGEYSGAGA---IFGATGGVMEAALRSAKDFAENAELEDIEYKQVRG 241
Query: 348 PD-IREATFTCGDVTLRFCIANGFRNIQNLIQKLKRKRLPYDFIEIMACPSGCLNGGAQI 406
+ I+EA + + NG N+ ++ Y FIE+MAC GC+NGG Q
Sbjct: 242 LNGIKEAEVEINNNKYNVAVINGASNLFKFMKSGMINEKQYHFIEVMACHGGCVNGGGQP 301
Query: 407 RN-----EKVASPKETALELETILCDLAKSEPRENATLEHLYKAWLGGKSTDKGKHMLNT 461
EKV K A L L+K + EN L +Y+ + G + +L+
Sbjct: 302 HVNPKDLEKVDIKKVRASVLYNQDEHLSKRKSHENTALVKMYQNYFGKPGEGRAHEILHF 361
Query: 462 SY 463
Y
Sbjct: 362 KY 363
|
| >d1hfel1 c.96.1.1 (L:87-398) Fe-only hydrogenase larger subunit, C-domain {Desulfovibrio desulfuricans [TaxId: 876]} Length = 312 | Back information, alignment and structure |
|---|
| >d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta chain {Escherichia coli [TaxId: 562]} Length = 509 | Back information, alignment and structure |
|---|
| >d1hfes_ a.137.4.1 (S:) Fe-only hydrogenase smaller subunit {Desulfovibrio desulfuricans [TaxId: 876]} Length = 88 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 477 | |||
| d3c8ya1 | 365 | Fe-only hydrogenase, catalytic domain {Clostridium | 100.0 | |
| d1hfel1 | 312 | Fe-only hydrogenase larger subunit, C-domain {Desu | 100.0 | |
| d1y5ib1 | 509 | Respiratory nitrate reductase 1 beta chain {Escher | 99.97 | |
| d1hfes_ | 88 | Fe-only hydrogenase smaller subunit {Desulfovibrio | 99.26 | |
| d2fug34 | 151 | NADH-quinone oxidoreductase chain 3, Nqo3, domain | 98.69 | |
| d3c8ya3 | 83 | Fe-only hydrogenase, second domain {Clostridium pa | 98.6 | |
| d1bc6a_ | 77 | Ferredoxin {Bacillus schlegelii [TaxId: 1484]} | 98.26 | |
| d1h98a_ | 77 | Ferredoxin {Thermus thermophilus [TaxId: 274]} | 98.14 | |
| d2fdna_ | 55 | Ferredoxin II {Clostridium acidurici [TaxId: 1556] | 98.12 | |
| d1hfel2 | 85 | Fe-only hydrogenase larger subunit, N-domain {Desu | 98.12 | |
| d1dura_ | 55 | Ferredoxin II {Peptostreptococcus asaccharolyticus | 98.09 | |
| d1blua_ | 80 | Ferredoxin II {Chromatium vinosum [TaxId: 1049]} | 97.99 | |
| d2fug91 | 154 | NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus | 97.91 | |
| d1rgva_ | 80 | Ferredoxin II {Thauera aromatica [TaxId: 59405]} | 97.85 | |
| d7fd1a_ | 106 | Ferredoxin {Azotobacter vinelandii [TaxId: 354]} | 97.84 | |
| d1jb0c_ | 80 | Photosystem I iron-sulfur protein PsaC {Synechococ | 97.83 | |
| d1xera_ | 103 | Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]} | 97.78 | |
| d1jnrb_ | 149 | Adenylylsulfate reductase B subunit {Archaeon Arch | 97.66 | |
| d3c7bb1 | 65 | DsrB insert domain {Archaeoglobus fulgidus [TaxId: | 97.64 | |
| d1vjwa_ | 59 | Ferredoxin A {Thermotoga maritima [TaxId: 2336]} | 97.39 | |
| d1sj1a_ | 66 | Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxI | 97.38 | |
| d2c42a5 | 117 | Pyruvate-ferredoxin oxidoreductase, PFOR, domain V | 97.33 | |
| d1fxra_ | 64 | Ferredoxin I {Sulfate-reducing bacteria (Desulfovi | 97.33 | |
| d1gtea5 | 173 | Dihydropyrimidine dehydrogenase, C-terminal domain | 97.18 | |
| d1fxda_ | 58 | Ferredoxin I {Desulfovibrio gigas [TaxId: 879]} | 97.0 | |
| d1iqza_ | 81 | Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1 | 96.92 | |
| d2fdna_ | 55 | Ferredoxin II {Clostridium acidurici [TaxId: 1556] | 96.45 | |
| d1blua_ | 80 | Ferredoxin II {Chromatium vinosum [TaxId: 1049]} | 96.44 | |
| d1hfel2 | 85 | Fe-only hydrogenase larger subunit, N-domain {Desu | 96.42 | |
| d1rgva_ | 80 | Ferredoxin II {Thauera aromatica [TaxId: 59405]} | 96.25 | |
| d1y5ib1 | 509 | Respiratory nitrate reductase 1 beta chain {Escher | 96.19 | |
| d1kqfb1 | 244 | Formate dehydrogenase N, iron-sulfur (beta) subuni | 95.89 | |
| d1dura_ | 55 | Ferredoxin II {Peptostreptococcus asaccharolyticus | 95.86 | |
| d1vjwa_ | 59 | Ferredoxin A {Thermotoga maritima [TaxId: 2336]} | 95.78 | |
| d1sj1a_ | 66 | Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxI | 95.54 | |
| d1xera_ | 103 | Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]} | 95.5 | |
| d1fxra_ | 64 | Ferredoxin I {Sulfate-reducing bacteria (Desulfovi | 95.49 | |
| d1jb0c_ | 80 | Photosystem I iron-sulfur protein PsaC {Synechococ | 95.13 | |
| d1bc6a_ | 77 | Ferredoxin {Bacillus schlegelii [TaxId: 1484]} | 95.09 | |
| d3c8ya3 | 83 | Fe-only hydrogenase, second domain {Clostridium pa | 94.72 | |
| d1vlfn2 | 195 | Transhydroxylase beta subunit, BthL, N-terminal do | 94.19 | |
| d1fxda_ | 58 | Ferredoxin I {Desulfovibrio gigas [TaxId: 879]} | 94.08 | |
| d2c42a5 | 117 | Pyruvate-ferredoxin oxidoreductase, PFOR, domain V | 93.84 | |
| d1h98a_ | 77 | Ferredoxin {Thermus thermophilus [TaxId: 274]} | 93.64 | |
| d7fd1a_ | 106 | Ferredoxin {Azotobacter vinelandii [TaxId: 354]} | 93.49 | |
| d1gtea5 | 173 | Dihydropyrimidine dehydrogenase, C-terminal domain | 93.31 | |
| d2fug91 | 154 | NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus | 93.29 | |
| d1iqza_ | 81 | Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1 | 93.26 | |
| d2v4jb1 | 69 | DsrB insert domain {Desulfovibrio vulgaris [TaxId: | 92.68 | |
| d1jnrb_ | 149 | Adenylylsulfate reductase B subunit {Archaeon Arch | 91.75 | |
| d2gmha3 | 102 | Electron transfer flavoprotein-ubiquinone oxidored | 88.09 | |
| d2bs2b1 | 133 | Fumarate reductase {Wolinella succinogenes [TaxId: | 87.14 | |
| d1kqfb1 | 244 | Formate dehydrogenase N, iron-sulfur (beta) subuni | 85.67 | |
| d2fug34 | 151 | NADH-quinone oxidoreductase chain 3, Nqo3, domain | 85.38 | |
| d1kf6b1 | 138 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 85.14 | |
| d1kf6b1 | 138 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 82.92 | |
| d1vlfn2 | 195 | Transhydroxylase beta subunit, BthL, N-terminal do | 82.2 | |
| d1nekb1 | 132 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 81.64 | |
| d1nekb1 | 132 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 81.46 | |
| d2bs2b1 | 133 | Fumarate reductase {Wolinella succinogenes [TaxId: | 81.25 |
| >d3c8ya1 c.96.1.1 (A:210-574) Fe-only hydrogenase, catalytic domain {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Fe-only hydrogenase superfamily: Fe-only hydrogenase family: Fe-only hydrogenase domain: Fe-only hydrogenase, catalytic domain species: Clostridium pasteurianum [TaxId: 1501]
Probab=100.00 E-value=1.2e-92 Score=724.80 Aligned_cols=354 Identities=28% Similarity=0.454 Sum_probs=317.4
Q ss_pred HHHHHHhhhccccCCCCCcEEEEEecccchhhhhhhcCCCHH-HHHHHHHHHHHHcCCcEEEECccchhhhHHHHHHHHH
Q psy3876 96 MKVIRENNAHKASSNENTKTIVLSLAIQPVLSLGAKFALSHE-QVVAKLCGFFKRLGVDLVLDVGIAHCFSLVELENEFL 174 (477)
Q Consensus 96 ~~~l~~~~~~~~~~~~~~~~~vvsisP~~~~sl~~~f~l~~~-~~~~~l~~~Lk~lGf~~V~Dt~~~ad~~~~e~~~e~~ 174 (477)
.++++.++. +++.+||+||||+|+||++.||++.+ .+.++|..+||+|||++|+||++|||++++|+++||+
T Consensus 3 ~~v~~~l~~-------~~k~vV~siaP~~r~sla~~f~l~~~~~~~~kl~~~lk~LGF~~V~dt~~gad~~~~e~~~E~~ 75 (365)
T d3c8ya1 3 DRVKNALNA-------PEKHVIVAMAPSVRASIGELFNMGFGVDVTGKIYTALRQLGFDKIFDINFGADMTIMEEATELV 75 (365)
T ss_dssp HHHHHHHHC-------TTCEEEEEECGGGGGTGGGGGTCCSSCCCHHHHHHHHHHHTCSEEEEHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-------CCcEEEEEECcHHHHHHHHHhCCCcccccHHHHHHHHHHcCCCEEEEcHHHHHHHHHHHHHHHH
Confidence 455666653 46789999999999999999999864 4689999999999999999999999999999999999
Q ss_pred HHhhcC-CCCcccccChhHHHHHHHhcCCCccCCCCCCCCHHHHHHHHHHHHhHHhhCCCCCcEEEEEEEccccchhhhh
Q psy3876 175 DRFLSG-GGPLFTSECPGWVCYAEKSHGEFILPYISRVKSPQQVMGSLIKTHLAEKLGVHPSHIYHVTLMPCYDKKLEAS 253 (477)
Q Consensus 175 ~~~~~~-~~p~itS~CP~~V~yiEk~~p~~Lip~ls~v~SP~~~~g~~iK~~~~~~~~~~~~~i~~V~I~PC~aKK~Ea~ 253 (477)
+|++++ ++|||||||||||+||||+||+ |+||||+|+|||||+|+++|++++++.|+++++|+|||||||+|||+||.
T Consensus 76 ~r~~~~~~~P~isS~CPg~V~yiEk~~Pe-Lip~ls~v~SP~~~~g~liK~~~~~~~~~~~~~i~~V~I~PC~aKK~Ea~ 154 (365)
T d3c8ya1 76 QRIENNGPFPMFTSCCPGWVRQAENYYPE-LLNNLSSAKSPQQIFGTASKTYYPSISGLDPKNVFTVTVMPCTSKKFEAD 154 (365)
T ss_dssp HHHHHTCSCCEECCCCHHHHHHHHHHCGG-GGGGBCCBCCHHHHHHHHHTTHHHHTTCCCGGGEEEEEEESCSHHHHHHT
T ss_pred HHHhcCCCCCeEEeCCHHHHHHHHHhChh-hhccccCCCCHHHHHHHHHHHHHHHhcCCCcccEEEEEEecccchhhhhc
Confidence 998654 7899999999999999999999 89999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCCCccEEeCHHHHHHHHHhcCCCCCCCcCCCCCCCCCCCCCCccccccccccCchhHHHHHHHHHHHHhC
Q psy3876 254 RADFYNEELGYRDVDCVITAVELEVLLANELATTTLQEEKDGILDWPWDEHNPHRMLLVNGTGSGGYAHNVLSHAIRQLC 333 (477)
Q Consensus 254 r~~~~~~~~~~~~VD~VLT~~El~~~l~~~~i~~~~~~~~~~~~d~~~~~~s~~~~~~~~~~~sGG~~e~v~~~~~~~~~ 333 (477)
|+++.. ++.++||+||||+||.+||++.+| ++..+++.++|.+++..++. ++.|+.||||+++++|++.+.++
T Consensus 155 r~e~~~--~~~~dVD~VLT~~El~~~l~~~~i--~~~~l~~~~~~~~~~~~s~~---g~~~~~sGG~~~~~~~~~~~~~~ 227 (365)
T d3c8ya1 155 RPQMEK--DGLRDIDAVITTRELAKMIKDAKI--PFAKLEDSEADPAMGEYSGA---GAIFGATGGVMEAALRSAKDFAE 227 (365)
T ss_dssp CTTSEE--TTEESCSEEEEHHHHHHHHHHTTC--CGGGCCCCCCCGGGTCCCHH---HHTTTSTTHHHHHHHHHHHHHHH
T ss_pred Cccccc--CCCCCcCEEeeHHHHHHHHHHcCC--ChhhCCCcccCCccCCCCcc---cceeeccccHHHHHHHHHHHhcc
Confidence 998843 345789999999999999999999 99999999999887776643 46899999999999999999999
Q ss_pred CCCCCCcceeeccC-CCcEEEEEe-CCceeEeEEEEeChHHHHHHHHHHHcCCCCCcEEEecCCCccccCCCCcccCCCC
Q psy3876 334 PGESPVVEFKPLRN-PDIREATFT-CGDVTLRFCIANGFRNIQNLIQKLKRKRLPYDFIEIMACPSGCLNGGAQIRNEKV 411 (477)
Q Consensus 334 ~~~~~~~~~~~~~~-~d~~~~~l~-~g~~~~~~~~v~G~~ni~~ll~~i~~g~~~~~fiEvmACpgGCi~Gggq~~~~~~ 411 (477)
+.++..+.|..+|| .++++++++ +|. .+++++++|++|++++|++++.|+.+|||||+|||||||+|||||++....
T Consensus 228 ~~~~~~~~~~~~rg~~~i~~~~~~~~~~-~~~~~~v~G~~n~~~~l~~~k~~~~~~~fvEvmACpgGCinGgGq~~~~~~ 306 (365)
T d3c8ya1 228 NAELEDIEYKQVRGLNGIKEAEVEINNN-KYNVAVINGASNLFKFMKSGMINEKQYHFIEVMACHGGCVNGGGQPHVNPK 306 (365)
T ss_dssp TCCCSCCCCGGGCSSCSEEEEEEEETTE-EEEEEEEESHHHHHHHHHTSGGGSSCCCEEEEESSTTSGGGCTTSCCCCHH
T ss_pred CCccccceeeeccCCCceEEEEEEeCCc-EEEEEEehhHHHHHHHHHHHhcCCCCCeEEEEecCCCCCcCCCCcCCCCcc
Confidence 99999999999999 559999998 665 589999999999999999999999999999999999999999999986432
Q ss_pred CCh--HHHHHHHHHHHh---hCCCCCCCCcHHHHHHHHHHhCCCCCcccccceeeeecc
Q psy3876 412 ASP--KETALELETILC---DLAKSEPRENATLEHLYKAWLGGKSTDKGKHMLNTSYHN 465 (477)
Q Consensus 412 ~~~--~~~~~r~~~~~~---~~~~~~~~~n~~~~~ly~~~l~~~~~~~~~~llht~y~~ 465 (477)
... .....|.+.+|. ..+.+.++|||.+++||++||++|+++++|++|||+|+.
T Consensus 307 ~~~~~~~~~~r~~~l~~~d~~~~~r~~~en~~~~~ly~~~l~~p~~~~~~~lLHT~y~~ 365 (365)
T d3c8ya1 307 DLEKVDIKKVRASVLYNQDEHLSKRKSHENTALVKMYQNYFGKPGEGRAHEILHFKYKK 365 (365)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHCSCCSGGGCHHHHHHHHHTTCSTTSHHHHHHSBCCCCC
T ss_pred hhhhHHHHHHHHHHHHhhhhcCCCCCCccCHHHHHHHHHHhCCCCcHHHHHHhcCCccC
Confidence 111 123456666664 578889999999999999999999999999999999974
|
| >d1hfel1 c.96.1.1 (L:87-398) Fe-only hydrogenase larger subunit, C-domain {Desulfovibrio desulfuricans [TaxId: 876]} | Back information, alignment and structure |
|---|
| >d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta chain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1hfes_ a.137.4.1 (S:) Fe-only hydrogenase smaller subunit {Desulfovibrio desulfuricans [TaxId: 876]} | Back information, alignment and structure |
|---|
| >d2fug34 d.58.1.5 (3:96-246) NADH-quinone oxidoreductase chain 3, Nqo3, domain 2 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
| >d1bc6a_ d.58.1.2 (A:) Ferredoxin {Bacillus schlegelii [TaxId: 1484]} | Back information, alignment and structure |
|---|
| >d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId: 1556]} | Back information, alignment and structure |
|---|
| >d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]} | Back information, alignment and structure |
|---|
| >d1dura_ d.58.1.1 (A:) Ferredoxin II {Peptostreptococcus asaccharolyticus [TaxId: 1258]} | Back information, alignment and structure |
|---|
| >d1blua_ d.58.1.1 (A:) Ferredoxin II {Chromatium vinosum [TaxId: 1049]} | Back information, alignment and structure |
|---|
| >d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1rgva_ d.58.1.1 (A:) Ferredoxin II {Thauera aromatica [TaxId: 59405]} | Back information, alignment and structure |
|---|
| >d7fd1a_ d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
| >d1jb0c_ d.58.1.2 (C:) Photosystem I iron-sulfur protein PsaC {Synechococcus elongatus [TaxId: 32046]} | Back information, alignment and structure |
|---|
| >d1xera_ d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]} | Back information, alignment and structure |
|---|
| >d1jnrb_ d.58.1.5 (B:) Adenylylsulfate reductase B subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d3c7bb1 d.58.1.5 (B:197-261) DsrB insert domain {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d1vjwa_ d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase, PFOR, domain V {Desulfovibrio africanus [TaxId: 873]} | Back information, alignment and structure |
|---|
| >d1fxra_ d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]} | Back information, alignment and structure |
|---|
| >d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
| >d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId: 879]} | Back information, alignment and structure |
|---|
| >d1iqza_ d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1427]} | Back information, alignment and structure |
|---|
| >d2fdna_ d.58.1.1 (A:) Ferredoxin II {Clostridium acidurici [TaxId: 1556]} | Back information, alignment and structure |
|---|
| >d1blua_ d.58.1.1 (A:) Ferredoxin II {Chromatium vinosum [TaxId: 1049]} | Back information, alignment and structure |
|---|
| >d1hfel2 d.58.1.5 (L:2-86) Fe-only hydrogenase larger subunit, N-domain {Desulfovibrio desulfuricans [TaxId: 876]} | Back information, alignment and structure |
|---|
| >d1rgva_ d.58.1.1 (A:) Ferredoxin II {Thauera aromatica [TaxId: 59405]} | Back information, alignment and structure |
|---|
| >d1y5ib1 d.58.1.5 (B:1-509) Respiratory nitrate reductase 1 beta chain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1kqfb1 d.58.1.5 (B:2-245) Formate dehydrogenase N, iron-sulfur (beta) subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1dura_ d.58.1.1 (A:) Ferredoxin II {Peptostreptococcus asaccharolyticus [TaxId: 1258]} | Back information, alignment and structure |
|---|
| >d1vjwa_ d.58.1.4 (A:) Ferredoxin A {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1sj1a_ d.58.1.4 (A:) Fe3S4-ferredoxin PF1909 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
| >d1xera_ d.58.1.3 (A:) Ferredoxin {Archaeon Sulfolobus sp. [TaxId: 2288]} | Back information, alignment and structure |
|---|
| >d1fxra_ d.58.1.4 (A:) Ferredoxin I {Sulfate-reducing bacteria (Desulfovibrio africanus) [TaxId: 873]} | Back information, alignment and structure |
|---|
| >d1jb0c_ d.58.1.2 (C:) Photosystem I iron-sulfur protein PsaC {Synechococcus elongatus [TaxId: 32046]} | Back information, alignment and structure |
|---|
| >d1bc6a_ d.58.1.2 (A:) Ferredoxin {Bacillus schlegelii [TaxId: 1484]} | Back information, alignment and structure |
|---|
| >d3c8ya3 d.58.1.5 (A:127-209) Fe-only hydrogenase, second domain {Clostridium pasteurianum [TaxId: 1501]} | Back information, alignment and structure |
|---|
| >d1vlfn2 d.58.1.5 (N:1-195) Transhydroxylase beta subunit, BthL, N-terminal domain {Pelobacter acidigallici [TaxId: 35816]} | Back information, alignment and structure |
|---|
| >d1fxda_ d.58.1.4 (A:) Ferredoxin I {Desulfovibrio gigas [TaxId: 879]} | Back information, alignment and structure |
|---|
| >d2c42a5 d.58.1.5 (A:669-785) Pyruvate-ferredoxin oxidoreductase, PFOR, domain V {Desulfovibrio africanus [TaxId: 873]} | Back information, alignment and structure |
|---|
| >d1h98a_ d.58.1.2 (A:) Ferredoxin {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d7fd1a_ d.58.1.2 (A:) Ferredoxin {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
| >d1gtea5 d.58.1.5 (A:845-1017) Dihydropyrimidine dehydrogenase, C-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
| >d2fug91 d.58.1.5 (9:26-179) NADH-quinone oxidoreductase chain 9, Nqo9 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1iqza_ d.58.1.4 (A:) Ferredoxin {Bacillus thermoproteolyticus [TaxId: 1427]} | Back information, alignment and structure |
|---|
| >d2v4jb1 d.58.1.5 (B:209-277) DsrB insert domain {Desulfovibrio vulgaris [TaxId: 881]} | Back information, alignment and structure |
|---|
| >d1jnrb_ d.58.1.5 (B:) Adenylylsulfate reductase B subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
| >d2gmha3 d.58.1.6 (A:483-584) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
| >d2bs2b1 a.1.2.1 (B:107-239) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
| >d1kqfb1 d.58.1.5 (B:2-245) Formate dehydrogenase N, iron-sulfur (beta) subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2fug34 d.58.1.5 (3:96-246) NADH-quinone oxidoreductase chain 3, Nqo3, domain 2 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1kf6b1 a.1.2.1 (B:106-243) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1kf6b1 a.1.2.1 (B:106-243) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1vlfn2 d.58.1.5 (N:1-195) Transhydroxylase beta subunit, BthL, N-terminal domain {Pelobacter acidigallici [TaxId: 35816]} | Back information, alignment and structure |
|---|
| >d1nekb1 a.1.2.1 (B:107-238) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1nekb1 a.1.2.1 (B:107-238) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d2bs2b1 a.1.2.1 (B:107-239) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|