Psyllid ID: psy3967

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320----
Protein Sequence
MPPLRNNIVTHLPPTNMNDNRSTSTLLDKCSRKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRRLKKGNTESAGYDTCGSLIIEPPKSKSEVSQSCSQPNQVVSSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQVIGHKEVANDPITLQPLHYIAETSTAVKPTACSQDDKRPEPNSDGRLCKICYQREMGVVFLPCGHIVACVI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccHHHHHHcccEEcccccccccccEEEEEEcccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccHHHHHcccccccccccccccccccccEEEEcccccEEEcccccccccccccccHHHHHHHHcccccccHHccccccccEEcccccccccccccccccccccccccccccccccccccccccccccHHHHcccEEEcEEEEccccEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccHHHHHHcccEEEcccccccccccEEEcccccEEEcccccccHHHHHHHHccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccHHHHHHHHHHccccccccHHHHHHccEEEccccccEEEcccccEEEcccccccHHHHHHHHccccHHHHHHHcHHHHHHHHHcHHHHHHHHHccccccccccccccccHHHcccccccccccccEEEEEEccccEEEEEEEcccEEEEEc
Coil and Loop (DISEMBL)
mpplrnnivthlpptnmndnrststlldkcsrkqnmtlecdrldsfknswpltYLSAKQMAAAGFYFlgkkengrfsddvkcifcgielgkwvqgddplkdhekwspncwflrrlkkgntesagydtcgsliieppksksevsqscsqpnqVVSSLEklgihknsppafpnyatyesrlrsfdswpislrlkpvtlteagffytgkadqtlcfrcggglkhweetddpwteharwfsscpyvklvkgqeFINQVighkevandpitlqplhyiaetstavkptacsqddkrpepnsdgrlckicyqremgvvflpcghivacvi
Flexible Loop (DISEMBL)
mpplrnnivthlpptnmndnrstSTLLDKCSRKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGkwvqgddplkdhekwspnCWFLRRLKKGNTESAGYDTCGSLIIEPPKSKSEVSQSCSQPNQVVSSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQVIGHKEVANDPITLQPLHYIAETStavkptacsqddkrpepnsdgRLCKICYQREMGVVFLPCGHIVACVI
Low Complexity Region (SEG)
MPPLRNNIVTHLPPTNMNDNRSTSTLLDKCSRKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRRLKKGNTESAGYDTCGSLIIEPPKSKSEVSQSCSQPNQVVSSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQVIGHKEVANDPITLQPLHYIAETSTAVKPTACSQDDKRPEPNSDGRLCKICYQREMGVVFLPCGHIVACVI
Disordered region (IsUnstruct)
************************************TLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRRLKKGNTESAGYDTCGSLII***********************************FPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQVIGHKEVANDPITLQPLHYIAETS*********************RLCKICYQREMGVVFLPCGHIVACV*
Disordered Region (DISOPRED)
*P*********************************MTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRRLKKGNTESAGYDTCGSLIIEPPKSKSEVSQSCSQPNQVVSSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQVIGHKEVANDPITLQPLHYIAETSTAVKPTACSQDDKRPEPNSDGRLCKICYQREMGVVFLPCGHIVACVI
Disordered Region (DISEMBL)
MPPLRNNIVTHLPPTNMNDNRSTSTLLDKCSRKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRRLKKGNTESAGYDTCGSLIIEPP*****************SSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQVIGHKEVANDPITLQPLHYIAETST*****************SDGRLCKICYQREMGVVFLPCGHIVACVI
Disordered Region (DISPRO)
**PLRNNIVTHL*****************CSRKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRRLKKG***********************************************PPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQVIGHKEVANDPIT********************Q*DKRPEPNSDGRLCKICYQREMGVVFLPCGHIVACVI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPPLRNNIVTHLPPTNMNDNRSTSTLLDKCSRKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRRLKKGNTESAGYDTCGSLIIEPPKSKSEVSQSCSQPNQVVSSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQVIGHKEVANDPITLQPLHYIAETSTAVKPTACSQDDKRPEPNSDGRLCKICYQREMGVVFLPCGHIVACVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	324	2.2.26 [Sep-21-2011]
P41436	275	Apoptosis inhibitor IAP O	N/A	N/A	0.762	0.898	0.371	2e-51
Q24306	438	Apoptosis 1 inhibitor OS=	yes	N/A	0.919	0.680	0.319	7e-50
P41437	268	E3 ubiquitin-protein liga	N/A	N/A	0.706	0.854	0.371	1e-48
A9ULZ2	345	Baculoviral IAP repeat-co	N/A	N/A	0.805	0.756	0.312	3e-39
A9JTP3	365	Baculoviral IAP repeat-co	yes	N/A	0.577	0.512	0.381	1e-31
Q8JHV9	401	Baculoviral IAP repeat-co	N/A	N/A	0.577	0.466	0.353	4e-31
O62640	358	Putative inhibitor of apo	no	N/A	0.521	0.472	0.365	5e-31
O08863	600	Baculoviral IAP repeat-co	yes	N/A	0.521	0.281	0.337	8e-31
Q13489	604	Baculoviral IAP repeat-co	yes	N/A	0.586	0.314	0.340	3e-30
Q13490	618	Baculoviral IAP repeat-co	no	N/A	0.484	0.254	0.338	4e-30

>sp|P41436|IAP_GVCPM Apoptosis inhibitor IAP OS=Cydia pomonella granulosis virus (isolate Mexico/1963) GN=IAP PE=4 SV=1

 Score =  203 bits (516), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 107/288 (37%), Positives = 161/288 (55%), Gaps = 41/288 (14%)

Query: 35  NMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQ 94
           ++ LE  RL++F+  WP+++LS + MA  GFY+LG+      SD+V+C FC +E+ +W +
Sbjct: 3   DLRLEEVRLNTFEK-WPVSFLSPETMAKNGFYYLGR------SDEVRCAFCKVEIMRWKE 55

Query: 95  GDDPLKDHEKWSPNCWFLRRLKKGNTESAGYDTCGSLIIEPPKSKSEVSQSCSQPNQVVS 154
           G+DP  DH+KW+P C F++          G D CGS++       +    +         
Sbjct: 56  GEDPAADHKKWAPQCPFVK----------GIDVCGSIVTTNNIQNTTTHDTI-------- 97

Query: 155 SLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFR 214
               +G      PA P YA   +R++SF +WP  ++ +P  + +AGFFYTG  D T CF 
Sbjct: 98  ----IG------PAHPKYAHEAARVKSFHNWPRCMKQRPEQMADAGFFYTGYGDNTKCFY 147

Query: 215 CGGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQVIGHKEVANDPITLQPLHYIA 274
           C GGLK WE  D PW +H RWF  C YV+LVKG++++ +VI    V     T      ++
Sbjct: 148 CDGGLKDWEPEDVPWEQHVRWFDRCAYVQLVKGRDYVQKVITEACVLPGENTT-----VS 202

Query: 275 ETSTAVKPTACSQDDKRPEPNSDGRLCKICYQREMGVVFLPCGHIVAC 322
             +   +P   ++ +K P+   D +LCKICY  E  V F+PCGH+VAC
Sbjct: 203 TAAPVSEPIPETKIEKEPQ-VEDSKLCKICYVEECIVCFVPCGHVVAC 249

Acts by blocking cellular apoptosis rather than by preventing viral stimulation of apoptosis.
Cydia pomonella (taxid: 82600)

>sp|Q24306|IAP1_DROME Apoptosis 1 inhibitor OS=Drosophila melanogaster GN=th PE=1 SV=2

 Score =  197 bits (502), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 128/401 (31%), Positives = 176/401 (43%), Gaps = 103/401 (25%)

Query: 19  DNRSTSTLLDKC----SRKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENG 74
           DN + +T L K     +R  ++  E  RL +F + WPL +L  +Q+A  G YF       
Sbjct: 20  DNNTNATQLFKNNINKTRMNDLNREETRLKTFTD-WPLDWLDKRQLAQTGMYFT------ 72

Query: 75  RFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRRLKKGNTE-----------SA 123
              D VKC FCG+E+G W Q D P+ +H++WSPNC  LRR    N               
Sbjct: 73  HAGDKVKCFFCGVEIGCWEQEDQPVPEHQRWSPNCPLLRRRTTNNVPINAEALDRILPPI 132

Query: 124 GYDTCG--------------------SLIIE-----------------PPKSKSEVSQSC 146
            YD CG                    S +I+                  P+ +  V+   
Sbjct: 133 SYDICGANDSTLEMREHAYAEGVIPMSQLIQSIGMNAVNAAGSVTGTAAPQPRVTVATHA 192

Query: 147 SQPNQVVSSLEK-----LGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGF 201
           S   Q    ++           N  P +P YA   +RLR+F++WP +L+ KP  L EAGF
Sbjct: 193 STATQATGDVQPETCRPSAASGNYFPQYPEYAIETARLRTFEAWPRNLKQKPHQLAEAGF 252

Query: 202 FYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQVIGHKEVA 261
           FYTG  D+  CF CGGGL  W + D+PW +HA W S C +VKL+KGQ +I+ V     +A
Sbjct: 253 FYTGVGDRVRCFSCGGGLMDWNDNDEPWEQHALWLSQCRFVKLMKGQLYIDTVAAKPVLA 312

Query: 262 NDPITLQPLHYIAETST-----------------------AVKPTACSQDDKR------- 291
            +      +  +A  ST                       +V PTA ++   +       
Sbjct: 313 EEKEESSSIGGVAVASTQASEEEQQTSLSSEEAVSGDVAPSVAPTAATRIFNKIVEATAV 372

Query: 292 --PEPNSDG-------RLCKICYQREMGVVFLPCGHIVACV 323
             P  NS G       +LCKICY  E    FLPCGH+VAC 
Sbjct: 373 ATPSTNSSGSTSIPEEKLCKICYGAEYNTAFLPCGHVVACA 413

Anti-apoptotic protein which functions as a caspase regulator, using its E3 ubiquitin-protein ligase activity to smother caspase activity. Binds, ubiquitinates and inactivates initator caspase Nc, and effector caspases ICE and DCP-1. Acts as a NEDD8-E3 ubiquitin-protein ligase for ICE. Suppresses apoptosis by targeting the apoptosome for ubiquitination and inactivation. Plays an important role in cell motility. Overexpression suppresses rpr and W-dependent cell death in the eye. Interaction of th with Nc is required to suppress Nc-mediated cell death; th-mediated ubiquitination of Nc. Acts as a positive regulator of Wnt signaling.

Drosophila melanogaster (taxid: 7227)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P41437|IAP3_NPVOP E3 ubiquitin-protein ligase IAP-3 OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=IAP3 PE=1 SV=1

 Score =  194 bits (492), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 107/288 (37%), Positives = 149/288 (51%), Gaps = 59/288 (20%)

Query: 35  NMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQ 94
           +M  +  RL ++ N WP+ +L   +MAA+GFY+LG+       D+V+C FC +E+  WV+
Sbjct: 14  DMKNKAARLGTYTN-WPVQFLEPSRMAASGFYYLGR------GDEVRCAFCKVEITNWVR 66

Query: 95  GDDPLKDHEKWSPNCWFLRRLKKGNTESAGYDTCGSLIIEPPKSKSEVSQSCSQPNQVVS 154
           GDDP  DH++W+P C F+R        +  +DT                     P+    
Sbjct: 67  GDDPETDHKRWAPQCPFVR--------NNAHDT---------------------PHDRAP 97

Query: 155 SLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFR 214
                  H       P YAT  +RLR+F  WP  L+ +P  L EAGFFYTG+ D+T CF 
Sbjct: 98  PARSAAAH-------PQYATEAARLRTFAEWPRGLKQRPEELAEAGFFYTGQGDKTRCFC 150

Query: 215 CGGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQVIGHKEVANDPITLQPLHYIA 274
           C GGLK WE  D PW +HARW+  C YV LVKG++F+ +V+    V  D          A
Sbjct: 151 CDGGLKDWEPDDAPWQQHARWYDRCEYVLLVKGRDFVQRVMTEACVVRD----------A 200

Query: 275 ETSTAVKPTACSQDDKRPEPNSDGRLCKICYQREMGVVFLPCGHIVAC 322
           +    ++  A   +       +D RLCKIC   E  V F+PCGH+VAC
Sbjct: 201 DNEPHIERPAVEAE------VADDRLCKICLGAEKTVCFVPCGHVVAC 242

RING-finger E3 ubiquitin ligase required to prevent cellular apoptosis in infected cells. Ubiquitinates and subsquently targets host pro-apoptotic cellular proteins such as HID for degradation by the proteasome.

Orgyia pseudotsugata (taxid: 33414)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A9ULZ2|BIR7B_XENLA Baculoviral IAP repeat-containing protein 7-B OS=Xenopus laevis GN=birc7-b PE=2 SV=2

 Score =  162 bits (410), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 98/314 (31%), Positives = 149/314 (47%), Gaps = 53/314 (16%)

Query: 33  KQNMTLECDRLDSFKNSWPLT--YLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELG 90
           + +M  E +R  SF+ +WP +   LS  ++A +GFY+LG        D V+C  CG  L 
Sbjct: 37  RPSMRSEAERQRSFR-AWPRSCPQLSPVELARSGFYYLGP------GDRVQCFSCGGVLR 89

Query: 91  KWVQGDDPLKDHEKWSPNCWFLRRLKKGNTESAGYDTCGSLIIEPPKSKSEVSQSCSQPN 150
            W  GD P  +H K+ P+C FL++ ++G   +   D                        
Sbjct: 90  SWEPGDRPDTEHRKFFPSCPFLQQQQRGPGATDSVD-----------------------G 126

Query: 151 QVVSSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQT 210
           QV+  L      +   P +P  +  + RL SF +WP+ +   P  L  AGFFYTG  D  
Sbjct: 127 QVLGQLSGEEPDRTWEPVYPEMSEEQVRLGSFSTWPLDVPGSPEVLAGAGFFYTGHRDHV 186

Query: 211 LCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQVIGHKEVANDPI--TLQ 268
            CF C GGL++WE+ DDPWTEHA+WF  C ++  VKG+ FI  V      + +P   +L 
Sbjct: 187 KCFHCDGGLQNWEQGDDPWTEHAKWFPMCDFLLQVKGEAFIRSVQESLFSSPEPSPESLG 246

Query: 269 PLHY----IAETSTAVKPTACSQDDKRPEPNSDG---------------RLCKICYQREM 309
              Y     + T +   P A +  ++   P   G               R+CK+C  +++
Sbjct: 247 SYDYDRSLASSTESVSVPRAPTPGERSEPPKVSGPPLSTEEQLQRLKEERMCKVCMDKDV 306

Query: 310 GVVFLPCGHIVACV 323
            ++F+PCGH+V C 
Sbjct: 307 SMLFVPCGHLVVCT 320

Weak apoptotic suppressor. Has E3 ubiquitin-protein ligase activity. Weak inhibitor of caspase activity.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A9JTP3|BIRC7_XENTR Baculoviral IAP repeat-containing protein 7 OS=Xenopus tropicalis GN=birc7 PE=2 SV=1

 Score =  137 bits (344), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 85/223 (38%), Positives = 106/223 (47%), Gaps = 36/223 (16%)

Query: 36  MTLECDRLDSFKNSWPLT--YLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWV 93
           M  E +R  SF+ +WP T   +S  ++A +GFY+LG        D V+C  CG  L  W 
Sbjct: 1   MRSEAERQRSFR-AWPHTCRTVSPAELARSGFYYLGP------GDRVQCFSCGGVLRSWE 53

Query: 94  QGDDPLKDHEKWSPNCWFL--RRLKKGNTESAGYDTCGSLIIEPPKSKSEVSQSCSQPNQ 151
            GD P  +H K+ P+C FL  RR   G T+S      G L  E P    E          
Sbjct: 54  PGDRPDTEHRKFFPSCPFLQVRRGPPGGTDSVDGQILGQLSGEEPDRTWE---------- 103

Query: 152 VVSSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTL 211
                          P  P  A    RL SF +WP      P  L  AGFFYTG  D   
Sbjct: 104 ---------------PVCPQMAGEGDRLGSFSTWPRYANGDPQQLAGAGFFYTGHRDHVK 148

Query: 212 CFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQV 254
           CF C GGL++WE+ DDPWTEHA+WF  C ++  VKG+ FI  V
Sbjct: 149 CFHCDGGLRNWEQGDDPWTEHAKWFPMCDFLLQVKGEAFIRSV 191

Weak apoptotic suppressor. Has E3 ubiquitin-protein ligase activity. Weak inhibitor of caspase activity.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8JHV9|BIR7A_XENLA Baculoviral IAP repeat-containing protein 7-A OS=Xenopus laevis GN=birc7-a PE=1 SV=1

 Score =  135 bits (340), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 80/226 (35%), Positives = 116/226 (51%), Gaps = 39/226 (17%)

Query: 33  KQNMTLECDRLDSFKNSWPLT--YLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELG 90
           + +M  E +RL SF ++WP T    S  +MA +GFY+LG        D V+C  CG  L 
Sbjct: 34  RPSMRSEAERLRSF-SAWPRTCPQPSPVEMARSGFYYLGP------GDRVQCFSCGGVLR 86

Query: 91  KWVQGDDPLKDHEKWSPNCWFLRRLKKGNTESAGYDTCGSLIIEPPKSKSEV--SQSCSQ 148
            W  GD P  +H K+ P+C FL++ ++                +P  + S++    S  +
Sbjct: 87  SWEPGDRPDTEHRKFFPSCTFLQQQQR----------------DPGATDSQILGQHSGEE 130

Query: 149 PNQVVSSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKAD 208
           P++   S+            +P  A    RL SF +WP+     P  L  +GFFYTG  D
Sbjct: 131 PDRTWESV------------YPEMAEERDRLDSFRNWPMYAHGNPEHLAGSGFFYTGHRD 178

Query: 209 QTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQV 254
              CF C GGL++WE+ DDPWTEHA+WF  C ++  VKG+ FI +V
Sbjct: 179 NVKCFHCDGGLRNWEQGDDPWTEHAKWFPMCDFLLHVKGEAFIRRV 224

Weak apoptotic suppressor. Has E3 ubiquitin-protein ligase activity. Weak inhibitor of caspase activity.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O62640|PIAP_PIG Putative inhibitor of apoptosis OS=Sus scrofa GN=PIAP PE=2 SV=1

 Score =  135 bits (339), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 80/219 (36%), Positives = 106/219 (48%), Gaps = 50/219 (22%)

Query: 36  MTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQG 95
           M  E DRL +F+  WPLT+LS   +A AGFY++G        D V C  CG +L  W   
Sbjct: 1   MNTEKDRLLTFQ-MWPLTFLSPADLAKAGFYYIGP------GDRVACFACGGKLSNWEPK 53

Query: 96  DDPLKDHEKWSPNCWFLRRLKKGNTESAGYDTCGSLIIEPPKSKSEVSQSCSQPNQVVSS 155
           DD + +H +  PNC FL     GN                        Q        VS+
Sbjct: 54  DDAMTEHLRHFPNCPFL-----GN------------------------QLQDSSRYTVSN 84

Query: 156 LEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRC 215
           L              +  TY +R ++F +WP S+ + P  L  AGF+Y G +D   CF C
Sbjct: 85  L--------------SMQTYAARFKTFCNWPSSIPVHPEQLASAGFYYMGHSDDVKCFCC 130

Query: 216 GGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQV 254
            GGL+ WE  DDPW EHA+WF  C Y+  +KGQEFI++V
Sbjct: 131 DGGLRCWESGDDPWVEHAKWFPRCEYLIRIKGQEFISRV 169

Sus scrofa (taxid: 9823)

>sp|O08863|BIRC3_MOUSE Baculoviral IAP repeat-containing protein 3 OS=Mus musculus GN=Birc3 PE=1 SV=2

 Score =  134 bits (337), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 74/219 (33%), Positives = 110/219 (50%), Gaps = 50/219 (22%)

Query: 36  MTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQG 95
           M  E  RL +++ +WPL++LS  ++A AGFY++G        D V C  C  +L  W + 
Sbjct: 164 MNTEKARLLTYE-TWPLSFLSPAKLAKAGFYYIGP------GDRVACFACDGKLSNWERK 216

Query: 96  DDPLKDHEKWSPNCWFLRRLKKGNTESAGYDTCGSLIIEPPKSKSEVSQSCSQPNQVVSS 155
           DD + +H++  P+C FL+ L     +SA   T  +L ++                     
Sbjct: 217 DDAMSEHQRHFPSCPFLKDLG----QSASRYTVSNLSMQ--------------------- 251

Query: 156 LEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRC 215
                             T+ +R+R+F +WP S  +    L  AGF+YTG +D   CF C
Sbjct: 252 ------------------THAARIRTFSNWPSSALVHSQELASAGFYYTGHSDDVKCFCC 293

Query: 216 GGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQV 254
            GGL+ WE  DDPW EHA+WF  C Y+  +KGQEF++QV
Sbjct: 294 DGGLRCWESGDDPWVEHAKWFPRCEYLLRIKGQEFVSQV 332

Multi-functional protein which regulates not only caspases and apoptosis, but also modulates inflammatory signaling and immunity, mitogenic kinase signaling and cell proliferation, as well as cell invasion and metastasis. Acts as an E3 ubiquitin-protein ligase regulating NF-kappa-B signaling and regulates both canonical and non-canonical NF-kappa-B signaling by acting in opposite directions: acts as a positive regulator of the canonical pathway and suppresses constitutive activation of non-canonical NF-kappa-B signaling. The target proteins for its E3 ubiquitin-protein ligase activity include: RIPK1, RIPK2, RIPK3, RIPK4, CASP3, CASP7, CASP8, TRAF1, and BCL10. Acts as an important regulator of innate immune signaling via regulation of Toll-like receptors (TLRs), Nodlike receptors (NLRs) and RIG-I like receptors (RLRs), collectively referred to as pattern recognition receptors (PRRs). Protects cells from spontaneous formation of the ripoptosome, a large multi-protein complex that has the capability to kill cancer cells in a caspase-dependent and caspase-independent manner. Suppresses ripoptosome formation by ubiquitinating RIPK1 and CASP8.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q13489|BIRC3_HUMAN Baculoviral IAP repeat-containing protein 3 OS=Homo sapiens GN=BIRC3 PE=1 SV=2

 Score =  132 bits (333), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 82/241 (34%), Positives = 114/241 (47%), Gaps = 51/241 (21%)

Query: 14  PTNMNDNRSTSTLLDKCSRKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKEN 73
           P N   N+  S L+ + S    M  E  RL +F+ +WPLT+LS   +A AGFY++G    
Sbjct: 145 PVNSRANQDFSALM-RSSYHCAMNNENARLLTFQ-TWPLTFLSPTDLAKAGFYYIGP--- 199

Query: 74  GRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRRLKKGNTESAGYDTCGSLII 133
               D V C  CG +L  W   D+ + +H +  P C F+        E+   DT      
Sbjct: 200 ---GDRVACFACGGKLSNWEPKDNAMSEHLRHFPKCPFI--------ENQLQDT------ 242

Query: 134 EPPKSKSEVSQSCSQPNQVVSSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKP 193
               S+  VS    Q                         T+ +R ++F +WP S+ + P
Sbjct: 243 ----SRYTVSNLSMQ-------------------------THAARFKTFFNWPSSVLVNP 273

Query: 194 VTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQ 253
             L  AGF+Y G +D   CF C GGL+ WE  DDPW +HA+WF  C Y+  +KGQEFI Q
Sbjct: 274 EQLASAGFYYVGNSDDVKCFCCDGGLRCWESGDDPWVQHAKWFPRCEYLIRIKGQEFIRQ 333

Query: 254 V 254
           V
Sbjct: 334 V 334

Multi-functional protein which regulates not only caspases and apoptosis, but also modulates inflammatory signaling and immunity, mitogenic kinase signaling and cell proliferation, as well as cell invasion and metastasis. Acts as an E3 ubiquitin-protein ligase regulating NF-kappa-B signaling and regulates both canonical and non-canonical NF-kappa-B signaling by acting in opposite directions: acts as a positive regulator of the canonical pathway and suppresses constitutive activation of non-canonical NF-kappa-B signaling. The target proteins for its E3 ubiquitin-protein ligase activity include: RIPK1, RIPK2, RIPK3, RIPK4, CASP3, CASP7, CASP8, TRAF1, and BCL10. Acts as an important regulator of innate immune signaling via regulation of Toll-like receptors (TLRs), Nodlike receptors (NLRs) and RIG-I like receptors (RLRs), collectively referred to as pattern recognition receptors (PRRs). Protects cells from spontaneous formation of the ripoptosome, a large multi-protein complex that has the capability to kill cancer cells in a caspase-dependent and caspase-independent manner. Suppresses ripoptosome formation by ubiquitinating RIPK1 and CASP8.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q13490|BIRC2_HUMAN Baculoviral IAP repeat-containing protein 2 OS=Homo sapiens GN=BIRC2 PE=1 SV=2

 Score =  132 bits (332), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 70/207 (33%), Positives = 101/207 (48%), Gaps = 50/207 (24%)

Query: 50  WPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNC 109
           WPLT+LS  ++A AGFY++G        D V C  CG +L  W   DD + +H +  PNC
Sbjct: 194 WPLTFLSPSELARAGFYYIGP------GDRVACFACGGKLSNWEPKDDAMSEHRRHFPNC 247

Query: 110 WFLRRLKKGNTESAGYDTCGSLIIEPPKSKSEVSQSCSQPNQVVSSLEKLGIHKNSPPAF 169
            FL                                         +SLE L    ++    
Sbjct: 248 PFLE----------------------------------------NSLETLRFSISNL--- 264

Query: 170 PNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPW 229
            +  T+ +R+R+F  WP S+ ++P  L  AGF+Y G+ D   CF C GGL+ WE  DDPW
Sbjct: 265 -SMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPW 323

Query: 230 TEHARWFSSCPYVKLVKGQEFINQVIG 256
            EHA+WF  C ++  +KGQEF++++ G
Sbjct: 324 VEHAKWFPRCEFLIRMKGQEFVDEIQG 350

Multi-functional protein which regulates not only caspases and apoptosis, but also modulates inflammatory signaling and immunity, mitogenic kinase signaling, and cell proliferation, as well as cell invasion and metastasis. Acts as an E3 ubiquitin-protein ligase regulating NF-kappa-B signaling and regulates both canonical and non-canonical NF-kappa-B signaling by acting in opposite directions: acts as a positive regulator of the canonical pathway and suppresses constitutive activation of non-canonical NF-kappa-B signaling. The target proteins for its E3 ubiquitin-protein ligase activity include: RIPK1, RIPK2, RIPK3, RIPK4, CASP3, CASP7, CASP8, TRAF2, DIABLO/SMAC, MAP3K14/NIK, MAP3K5/ASK1, IKBKG/NEMO and MXD1/MAD1. Can also function as an E3 ubiquitin-protein ligase of the NEDD8 conjugation pathway, targeting effector caspases for neddylation and inactivation. Acts as an important regulator of innate immune signaling via regulation of Toll-like receptors (TLRs), Nodlike receptors (NLRs) and RIG-I like receptors (RLRs), collectively referred to as pattern recognition receptors (PRRs). Protects cells from spontaneous formation of the ripoptosome, a large multi-protein complex that has the capability to kill cancer cells in a caspase-dependent and caspase-independent manner. Suppresses ripoptosome formation by ubiquitinating RIPK1 and CASP8. Can stimulate the transcriptional activity of E2F1. Plays a role in the modulation of the cell cycle.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	324
301072333	381	putative inhibitor of apoptosis 1 [Lygus	0.824	0.700	0.433	1e-70
6635437	379	inhibitor of apoptosis protein [Trichopl	0.839	0.717	0.398	3e-59
350419054	406	PREDICTED: E3 ubiquitin-protein ligase I	0.922	0.736	0.375	2e-58
350419307	406	PREDICTED: E3 ubiquitin-protein ligase I	0.861	0.687	0.364	2e-58
304423112	382	inhibitor of apoptosis protein [Helicove	0.793	0.672	0.399	3e-58
159025465	382	inhibitor of apoptosis [Spodoptera litto	0.777	0.659	0.403	3e-58
357626318	505	inhibitor of apoptosis [Danaus plexippus	0.768	0.493	0.404	9e-58
340708910	406	PREDICTED: apoptosis 1 inhibitor-like is	0.944	0.753	0.360	1e-57
375280377	378	inhibitor of apoptosis [Spodoptera litur	0.777	0.666	0.403	3e-57
7021325	377	inhibitor of apoptosis protein [Spodopte	0.774	0.665	0.410	6e-57

>gi|301072333|gb|ADK56128.1| putative inhibitor of apoptosis 1 [Lygus lineolaris]

 Score =  273 bits (697), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 140/323 (43%), Positives = 189/323 (58%), Gaps = 56/323 (17%)

Query: 39  ECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDP 98
           E +RL +F+  WP+++LS + M  AGFY++ +       D V+C FC IE+G+WV+GDDP
Sbjct: 52  ESERLKTFER-WPVSFLSPRTMTEAGFYYINR------DDIVRCAFCNIEVGRWVEGDDP 104

Query: 99  LKDHEKWSPNCWFLRRLK---------------KGNTESAGYDTCGSLIIEPPKSKSEVS 143
           + DHE+W+P C F+R                   G+    G+D CG  +        E  
Sbjct: 105 MADHERWAPACRFVRHQDVNNVPIGEEGSTSGDSGSESLEGFDVCGHGM--------EFQ 156

Query: 144 QSCSQPNQVVSSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFY 203
               +P  ++ + E  G  K+  P F NYAT ++RLRS+D+WPISL+LKP  L++AGFFY
Sbjct: 157 TESQRPASLLETHE--GYLKSRAPCFANYATLDARLRSYDTWPISLKLKPNVLSDAGFFY 214

Query: 204 TGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQVIGHKEVAN- 262
           TGK DQT+C+ CGGGLK WEETD+PW EHARWFS CPYV  VKG+ FI +V G + V + 
Sbjct: 215 TGKGDQTICYHCGGGLKDWEETDEPWVEHARWFSKCPYVLAVKGKSFIEEVNGSRAVQDV 274

Query: 263 ---------------DPITLQPLHYIAETSTAVKPTACSQDDKRPE-------PNSDGRL 300
                          D +   P+    + +T+ +P     D  RP+       P+ DGRL
Sbjct: 275 TQNGNIGLSSSTGDLDKVPSVPVEEKVKKTTS-EPVKTVGDSSRPKEDSQSAAPSHDGRL 333

Query: 301 CKICYQREMGVVFLPCGHIVACV 323
           CKIC+  EMG VFLPCGHIVACV
Sbjct: 334 CKICFSEEMGAVFLPCGHIVACV 356

Source: Lygus lineolaris

Species: Lygus lineolaris

Genus: Lygus

Family: Miridae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|6635437|gb|AAF19819.1|AF195528_1 inhibitor of apoptosis protein [Trichoplusia ni]

 Score =  234 bits (598), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 124/311 (39%), Positives = 179/311 (57%), Gaps = 39/311 (12%)

Query: 16  NMNDNRSTSTLLDKCSRKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGR 75
           +  DN  T +L    +   +M+ E +R+ +F+  WP+++LS +Q+A  GFY+LG+     
Sbjct: 80  DKTDNHDTFSLT---ADAVDMSREDERIKTFEK-WPVSFLSGEQLARNGFYYLGR----- 130

Query: 76  FSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRRLKKG-NTES--AGYDTCGSLI 132
             D+V+C FC +E+ +WV+GDDP KDH++W+P C F+R+L  G NT+S  AG D CG+  
Sbjct: 131 -GDEVRCAFCKVEIMRWVEGDDPAKDHQRWAPQCPFVRKLGGGVNTDSGAAGRDECGAR- 188

Query: 133 IEPPKSKSEVSQSCSQPNQVVSSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLK 192
                     +   S P+++              P  P YA+  +RLRSF  WP  +R K
Sbjct: 189 ----------AAPTSSPSRMPG------------PVHPRYASEAARLRSFKDWPRCMRQK 226

Query: 193 PVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFIN 252
           P  L EAGFFYTG+ D+T CF C GGLK WE  D PW +HARWF  C YV+LVKG+E++ 
Sbjct: 227 PEELAEAGFFYTGQGDKTKCFYCDGGLKDWENDDVPWEQHARWFDRCAYVQLVKGREYVQ 286

Query: 253 QVIGHKEVANDPITLQPLHYIAETSTAVKPTACSQDDKRPEPNSDGRLCKICYQREMGVV 312
           +V+    V   P   +     A   +A +P+  S  + +     D +LCKIC+  E  V 
Sbjct: 287 KVMTEACVIPAPAAPRDE---APARSAAEPSVVSAAEPQESTLDDSKLCKICFAEERNVC 343

Query: 313 FLPCGHIVACV 323
           F+PCGH+VAC 
Sbjct: 344 FVPCGHVVACA 354

Source: Trichoplusia ni

Species: Trichoplusia ni

Genus: Trichoplusia

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419054|ref|XP_003492055.1| PREDICTED: E3 ubiquitin-protein ligase IAP-3-like [Bombus impatiens]

 Score =  232 bits (592), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 139/370 (37%), Positives = 198/370 (53%), Gaps = 71/370 (19%)

Query: 16  NMNDNRSTSTLLDKCSRKQN---MTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKE 72
           N++   S S   D C  + +      E  RL SF+N WP+TY+  +++AAAGFY+ G+  
Sbjct: 21  NVHLTPSVSVTPDICHDEADNIDYHFEAARLQSFEN-WPITYIEPEKLAAAGFYYTGE-- 77

Query: 73  NGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRRLKKGNTESAGYDTCGSLI 132
               SD VKC  C +E+ KWV+GD P+ DH++WS  C F+R+L  GN    G D  G++I
Sbjct: 78  ----SDRVKCFECEVEICKWVEGDIPMVDHQRWSARCRFIRKLNCGNI-PIGVDP-GTVI 131

Query: 133 IEPPKSKSEVS------QSCSQPNQVVSSLEK----------LGIHKNSPPAFPNYATYE 176
              P+S+   S      +  S P+    S+E           LG+ +   P  P YA+Y+
Sbjct: 132 PPRPRSRDVCSPYGLEYRPTSGPDDHNFSMELQLASTAKLGCLGLGRTKGPVHPEYASYD 191

Query: 177 SRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWF 236
           +RL +F +WP S+      L +AGFFYTGK DQTLC+ CGGGLK WE  DDPW +HA+WF
Sbjct: 192 ARLHTFVTWPKSMPQTKEQLADAGFFYTGKGDQTLCYHCGGGLKDWEPEDDPWEQHAKWF 251

Query: 237 SSCPYVKLVKGQEFINQVIG-HKEVANDPITLQP-----LHYIAETSTAVK--------P 282
           S C YV +V+GQ+++N++ G H    +   T+Q      +  +  TS  V+        P
Sbjct: 252 SKCCYVLIVQGQDYVNKITGQHISPPSKEETMQMNLPSFIKKVQPTSVEVERKEETESNP 311

Query: 283 TACSQDD-----------------------------KRPEPNSDGRLCKICYQREMGVVF 313
            + SQ++                             +  +P  D R+CKICY  E+GVVF
Sbjct: 312 GSSSQNNDIWGIGSNTEPIKRSLESEPAENPSNIKTQNTKPTDDARMCKICYNGELGVVF 371

Query: 314 LPCGHIVACV 323
           LPCGH+VACV
Sbjct: 372 LPCGHMVACV 381

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419307|ref|XP_003492138.1| PREDICTED: E3 ubiquitin-protein ligase IAP-3-like [Bombus impatiens]

 Score =  231 bits (590), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 125/343 (36%), Positives = 182/343 (53%), Gaps = 64/343 (18%)

Query: 38  LECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDD 97
            E  RL SF+N WP+TY+  +++AAAGFY+ G+      SD VKC  CG+E+ KWV+GD 
Sbjct: 46  FEAARLQSFEN-WPITYIEPEKLAAAGFYYTGE------SDRVKCFECGVEICKWVEGDI 98

Query: 98  PLKDHEKWSPNCWFLRRLKKGNT------------ESAGYDTCGSLIIEPPKSKSEVSQS 145
           P+ DH++WS  C F+R+L  GN                  D CG   +E   +      +
Sbjct: 99  PMVDHQRWSARCRFIRKLNCGNIPIGVDPGTVIRPRPKSRDVCGPYGLEYRPTSGPDDHN 158

Query: 146 CSQPNQVVSS--LEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFY 203
            S   Q+ S+  L  LG+ +   P  P YA+Y++RL +F +WP S+      L +AGF+Y
Sbjct: 159 FSMELQLASTAKLGCLGLGRTKEPVHPEYASYDARLHTFVTWPKSMPQTKEQLADAGFYY 218

Query: 204 TGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQVIGH------ 257
           TGK DQTLC+ CGGGLK WE  DDPW +HA+ FS C YV +V+GQ+++N++ G       
Sbjct: 219 TGKGDQTLCYHCGGGLKDWEPEDDPWEQHAKLFSKCCYVLIVQGQDYVNKITGQHISPPS 278

Query: 258 --------------------------KEVANDPITLQPLHYIAETSTAVKPTACSQD--- 288
                                     K++ ++P +    ++I    +  +P   S +   
Sbjct: 279 KEETMRMNLPSFIKKVQPTRVEVERKKDIESNPGSSSQNNHIWGIGSNTEPIKRSLEYEP 338

Query: 289 --------DKRPEPNSDGRLCKICYQREMGVVFLPCGHIVACV 323
                    +  +P  D R+CKICY  E+GVVFLPCGH++ACV
Sbjct: 339 AENPSNTKTRNTKPTDDARMCKICYNEELGVVFLPCGHMIACV 381

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|304423112|gb|ADM32901.1| inhibitor of apoptosis protein [Helicoverpa armigera]

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 117/293 (39%), Positives = 169/293 (57%), Gaps = 36/293 (12%)

Query: 35  NMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQ 94
           +M  E +R+ +F+  WP+T+L  +Q+A  GFY+LG+       D+V+C FC +E+ +WV+
Sbjct: 97  DMRREDERIKTFEK-WPVTFLPGEQLARNGFYYLGR------GDEVRCAFCKVEIMRWVE 149

Query: 95  GDDPLKDHEKWSPNCWFLRRLKKG---NTESAGYDTCGSLIIEPPKSKSEVSQSCSQPNQ 151
           GDDP KDH++W+P C F+R+L  G   ++ S+G D CG+            + + + P +
Sbjct: 150 GDDPAKDHQRWAPQCPFVRKLGGGASTDSSSSGRDECGA----------RAAATSTTPPR 199

Query: 152 VVSSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTL 211
           +              P  P +A+  +RLRSF  WP  +R KP  L EAGFFYTG+ D+T 
Sbjct: 200 MAG------------PVHPRFASEAARLRSFKDWPRCMRQKPEELAEAGFFYTGQGDKTK 247

Query: 212 CFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQVIGHKEVANDPITLQPLH 271
           CF C GGLK WE  D PW +HARWF  C YV+LVKG+E++ +V+    V       +   
Sbjct: 248 CFYCDGGLKDWENDDVPWEQHARWFDRCAYVQLVKGREYVQKVMSEACVVT---AAEAEK 304

Query: 272 YIAETSTAVKPTACSQDDKRPEPN-SDGRLCKICYQREMGVVFLPCGHIVACV 323
            +A      +PT  S   + PE +  D +LCKICY  E  V F+PCGH+VAC 
Sbjct: 305 DVAPARPPSQPTTPSTQPETPENSVDDSKLCKICYAEERNVCFVPCGHVVACA 357

Source: Helicoverpa armigera

Species: Helicoverpa armigera

Genus: Helicoverpa

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|159025465|emb|CAM96614.1| inhibitor of apoptosis [Spodoptera littoralis]

 Score =  231 bits (589), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 119/295 (40%), Positives = 169/295 (57%), Gaps = 43/295 (14%)

Query: 35  NMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQ 94
           +M  E +R+ +F+  WP+++L+ +Q+A  GFY+LG+       D+ +C FC +E+ +WV+
Sbjct: 100 DMRKEDERMKTFEK-WPVSFLTGQQLARNGFYYLGR------GDEARCAFCKVEIMRWVE 152

Query: 95  GDDPLKDHEKWSPNCWFLRRLK---KGNTESAGYDTCGSLIIEPPKSKSEVSQSCSQPNQ 151
           GDDP KDH++W+P C F+R+L      +T S+G D CG+            + S + P +
Sbjct: 153 GDDPAKDHQRWAPQCPFVRKLNGSASSDTGSSGQDECGA----------RATPSGTSPPR 202

Query: 152 VVSSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTL 211
           +              P  P YA+  +RLRSF  WP  +R KP  L EAGFFYTG+ D+T 
Sbjct: 203 MAG------------PVHPRYASEAARLRSFKDWPRCMRQKPEELAEAGFFYTGQGDKTK 250

Query: 212 CFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQVIGHK-EVANDPIT--LQ 268
           CF C GGLK WE  D PW +HARWF  C YV+LVKG+E++ +VI    EV+       + 
Sbjct: 251 CFYCDGGLKDWENHDVPWEQHARWFDRCAYVQLVKGREYVQKVISEACEVSASEAERDVA 310

Query: 269 PLHYIAETSTAVKPTACSQDDKRPEPNSDGRLCKICYQREMGVVFLPCGHIVACV 323
           P    +E+S  V+    S D        D +LCKICY  E  V F+PCGH+VAC 
Sbjct: 311 PSRTTSESSAPVETPENSVD--------DSKLCKICYAEERNVCFVPCGHVVACA 357

Source: Spodoptera littoralis

Species: Spodoptera littoralis

Genus: Spodoptera

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357626318|gb|EHJ76448.1| inhibitor of apoptosis [Danaus plexippus]

 Score =  229 bits (585), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 118/292 (40%), Positives = 163/292 (55%), Gaps = 43/292 (14%)

Query: 35  NMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQ 94
           +M  E +R+ +F+N WP+ +LS + +A  GFY+L +       D+V+C FC +E+ KW+ 
Sbjct: 149 DMRREDERIKTFEN-WPVPFLSPELLARNGFYYLKR------GDEVRCAFCKVEIMKWMV 201

Query: 95  GDDPLKDHEKWSPNCWFLRR-LKKGNT--ESAGYDTCGSLIIEPPKSKSEVSQSCSQPNQ 151
           GDDP  DH++W+P C FLRR    GN   E  G D CG  +  PP + + V         
Sbjct: 202 GDDPATDHQRWAPQCPFLRRQAASGNVPIEDGGRDECGVHV--PPPAPTPV--------- 250

Query: 152 VVSSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTL 211
                      +   P  P+Y++ ++RLR+F  WP S+R KP  L EAGFFYTG+ D+T 
Sbjct: 251 -----------RMPGPKHPHYSSEDARLRTFSDWPRSMRQKPEELAEAGFFYTGQGDKTK 299

Query: 212 CFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQVIGHKEVANDPITLQPLH 271
           CF C GGLK WE  D PW +HARWFS C YV+LVKG+E+I +VI   E  N         
Sbjct: 300 CFFCDGGLKDWENDDVPWEQHARWFSRCAYVQLVKGREYIEKVIAQAEAEN--------- 350

Query: 272 YIAETSTAVKPTACSQDDKRPEPNSDGRLCKICYQREMGVVFLPCGHIVACV 323
                     P   ++   +P    D +LCKICY  E+ + F+PCGH+VAC 
Sbjct: 351 --GTHKEDADPKVETKTKDKPRSEDDSKLCKICYNEELNICFVPCGHVVACA 400

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340708910|ref|XP_003393060.1| PREDICTED: apoptosis 1 inhibitor-like isoform 1 [Bombus terrestris] gi|340708912|ref|XP_003393061.1| PREDICTED: apoptosis 1 inhibitor-like isoform 2 [Bombus terrestris]

 Score =  229 bits (584), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 137/380 (36%), Positives = 196/380 (51%), Gaps = 74/380 (19%)

Query: 4   LRNNIVTHLPPTNMNDNRSTSTLLDKCSRKQNMT---LECDRLDSFKNSWPLTYLSAKQM 60
           L+++   HL P       S S   D C  + +      E  RL SF+N WP+TY+  +++
Sbjct: 16  LKSSGNAHLTP-------SVSVTPDTCHDEADNVDYHFEAARLQSFEN-WPVTYIEPEKL 67

Query: 61  AAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRRLKKGNT 120
           AAAGFY+ G+      SD VKC  C +E+ KWV+GD P+ DH++WS  C F+R+L  GN 
Sbjct: 68  AAAGFYYTGE------SDKVKCFECQVEICKWVEGDIPMVDHQRWSARCRFIRKLNCGNV 121

Query: 121 ------------ESAGYDTCGSLIIEPPKSKSEVSQSCSQPNQVVSS--LEKLGIHKNSP 166
                            D C    +E   +      + S   Q+ S+  L  LG+ +   
Sbjct: 122 PIGVDPDTVTPPRPRSRDVCSPYGLEYRPTSGPDDHNFSMELQLASTAKLGCLGLGRTKG 181

Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
           P  P YA+Y++RL +F +WP S+      L +AGFFYTGK DQTLC+ CGGGLK WE  D
Sbjct: 182 PVHPEYASYDARLHTFVTWPKSMPQTKEQLADAGFFYTGKGDQTLCYHCGGGLKDWEPED 241

Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQVIG-HKEVANDPITLQP-----LHYIAETSTAV 280
           DPW +HA+WFS C Y+ +V+GQ++I+++ G H    +   T+Q      +  +  TS  V
Sbjct: 242 DPWEQHAKWFSKCCYLLMVQGQDYISKITGQHVSPPSKEETMQMNLPSFIKKVQPTSVEV 301

Query: 281 K--------PTACSQDD-----------------------------KRPEPNSDGRLCKI 303
           +        P + SQ++                             +  +P  D R+CKI
Sbjct: 302 ERKEETESNPGSSSQNNDIWGIASNTEPIKRSLESEPTENPSNIKTQNTKPTDDARMCKI 361

Query: 304 CYQREMGVVFLPCGHIVACV 323
           CY  E+GVVFLPCGH+VACV
Sbjct: 362 CYNGELGVVFLPCGHMVACV 381

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|375280377|gb|AFA43941.1| inhibitor of apoptosis [Spodoptera litura]

 Score =  228 bits (581), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 119/295 (40%), Positives = 169/295 (57%), Gaps = 43/295 (14%)

Query: 35  NMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQ 94
           +M  E +R+ +F+  WP+++L+ +Q+A  GFY+LG+       D+V+C FC +E+ +WV+
Sbjct: 96  DMRKEDERMKTFEK-WPVSFLTGEQLARNGFYYLGR------GDEVRCAFCKVEIMRWVE 148

Query: 95  GDDPLKDHEKWSPNCWFLRRLK---KGNTESAGYDTCGSLIIEPPKSKSEVSQSCSQPNQ 151
           GDDP KDH++W+P C  +R+L      +T S+G D CG+            + S + P +
Sbjct: 149 GDDPAKDHQRWAPQCPLVRKLNGSASSDTGSSGQDECGA----------RAAPSGTSPPR 198

Query: 152 VVSSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTL 211
           +              P  P YA+  +RLRSF  WP  +R KP  L EAGFFYTG+ D+T 
Sbjct: 199 MAG------------PVHPRYASEAARLRSFKDWPRCMRQKPEELAEAGFFYTGQGDKTK 246

Query: 212 CFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQVIGHK-EVANDPIT--LQ 268
           CF C GGLK WE  D PW +HARWF  C YV+LVKG+E++ +VI    EV+       + 
Sbjct: 247 CFYCDGGLKDWENHDVPWEQHARWFDRCAYVQLVKGREYVQKVISEACEVSASEAERDVT 306

Query: 269 PLHYIAETSTAVKPTACSQDDKRPEPNSDGRLCKICYQREMGVVFLPCGHIVACV 323
           P    +E+S  V+    S D        D +LCKICY  E  V F+PCGH+VAC 
Sbjct: 307 PSRTTSESSAPVETPENSVD--------DSKLCKICYAEERNVCFVPCGHVVACA 353

Source: Spodoptera litura

Species: Spodoptera litura

Genus: Spodoptera

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|7021325|gb|AAF35285.1|AF186378_1 inhibitor of apoptosis protein [Spodoptera frugiperda]

 Score =  227 bits (578), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 121/295 (41%), Positives = 167/295 (56%), Gaps = 44/295 (14%)

Query: 35  NMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQ 94
           +M  E +R+ +F+  WP+++LS +Q+A  GFY+LG++      D+ +C FC +E+ +WV+
Sbjct: 96  DMRKEDERMKTFEK-WPVSFLSGEQLARNGFYYLGRR------DEARCAFCKVEIMRWVE 148

Query: 95  GDDPLKDHEKWSPNCWFLRRLK---KGNTESAGYDTCGSLIIEPPKSKSEVSQSCSQPNQ 151
           GDDP KDH++W+P C F+R+L      +T S+G D CG+            + S + P +
Sbjct: 149 GDDPAKDHQRWAPQCPFVRKLNGTAAADTGSSGQDECGA----------RAAPSGTSPPR 198

Query: 152 VVSSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTL 211
           +              P  P YA+  +RLRSF  WP  +R KP  L EAGFFYTG+ D+T 
Sbjct: 199 MAG------------PVHPRYASEAARLRSFKDWPRCMRQKPEELAEAGFFYTGQGDKTK 246

Query: 212 CFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQVIGHK-EVANDPITLQPL 270
           CF C GGLK WE  D PW +HARWF  C YV+LVKG+E++ +VI    EV+         
Sbjct: 247 CFYCDGGLKDWENHDVPWEQHARWFDRCAYVQLVKGREYVQKVISEACEVSASE------ 300

Query: 271 HYIAETSTAVKPTACSQDDKRPEPNS--DGRLCKICYQREMGVVFLPCGHIVACV 323
              AE   A   TA          NS  D +LCKICY  E  V F+PCGH+VAC 
Sbjct: 301 ---AERDVAPARTAEPSPPAEAPENSVDDSKLCKICYAEERNVCFVPCGHVVACA 352

Source: Spodoptera frugiperda

Species: Spodoptera frugiperda

Genus: Spodoptera

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	324
FB|FBgn0260635	438	th "thread" [Drosophila melano	0.345	0.255	0.455	4.2e-54
UNIPROTKB|P41437	268	IAP3 "E3 ubiquitin-protein lig	0.447	0.541	0.439	1.6e-51
UNIPROTKB|A9ULZ2	345	birc7-b "Baculoviral IAP repea	0.333	0.313	0.435	6.5e-45
UNIPROTKB|A9JTP3	365	birc7 "Baculoviral IAP repeat-	0.333	0.295	0.435	5.7e-44
FB|FBgn0015247	498	Iap2 "Inhibitor of apoptosis 2	0.308	0.200	0.411	3.6e-43
ZFIN|ZDB-GENE-030825-6	654	birc2 "baculoviral IAP repeat-	0.243	0.120	0.493	6.3e-43
UNIPROTKB|Q8JHV9	401	birc7-a "Baculoviral IAP repea	0.296	0.239	0.450	2e-42
UNIPROTKB|H0YEZ0	372	BIRC3 "Baculoviral IAP repeat-	0.25	0.217	0.493	2.4e-42
MGI|MGI:1197007	600	Birc3 "baculoviral IAP repeat-	0.641	0.346	0.325	1.8e-34
UNIPROTKB|G3MXL2	553	LOC539314 "Uncharacterized pro	0.530	0.311	0.331	4.6e-31

FB|FBgn0260635 th "thread" [Drosophila melanogaster (taxid:7227)]

 Score = 289 (106.8 bits), Expect = 4.2e-54, Sum P(3) = 4.2e-54
 Identities = 51/112 (45%), Positives = 70/112 (62%)

Query:   167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
             P +P YA   +RLR+F++WP +L+ KP  L EAGFFYTG  D+  CF CGGGL  W + D
Sbjct:   218 PQYPEYAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWNDND 277

Query:   227 DPWTEHARWFSSCPYVKLVKGQEFINQVIGHKEVANDPITLQPLHYIAETST 278
             +PW +HA W S C +VKL+KGQ +I+ V     +A +      +  +A  ST
Sbjct:   278 EPWEQHALWLSQCRFVKLMKGQLYIDTVAAKPVLAEEKEESSSIGGVAVAST 329

GO:0043066 "negative regulation of apoptotic process" evidence=IGI;ISS;NAS;IMP;IDA;TAS

GO:0006915 "apoptotic process" evidence=NAS;TAS;IPI

GO:0007275 "multicellular organismal development" evidence=TAS

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IGI;TAS

GO:0004842 "ubiquitin-protein ligase activity" evidence=TAS

GO:0006513 "protein monoubiquitination" evidence=TAS

GO:0008354 "germ cell migration" evidence=TAS

GO:0042787 "protein ubiquitination involved in ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0007289 "spermatid nucleus differentiation" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009987 "cellular process" evidence=IMP

GO:0007298 "border follicle cell migration" evidence=IGI;IMP

GO:0048800 "antennal morphogenesis" evidence=IMP

GO:0007423 "sensory organ development" evidence=IMP

GO:0046673 "negative regulation of compound eye retinal cell programmed cell death" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IDA

GO:0045035 "sensory organ precursor cell division" evidence=IGI

GO:0008407 "chaeta morphogenesis" evidence=IMP

GO:0019899 "enzyme binding" evidence=IPI

GO:0019788 "NEDD8 ligase activity" evidence=IDA

GO:0090263 "positive regulation of canonical Wnt receptor signaling pathway" evidence=IMP

UNIPROTKB|P41437 IAP3 "E3 ubiquitin-protein ligase IAP-3" [Orgyia pseudotsugata multiple nucleopolyhedrovirus (taxid:262177)]

 Score = 356 (130.4 bits), Expect = 1.6e-51, Sum P(2) = 1.6e-51
 Identities = 73/166 (43%), Positives = 94/166 (56%)

Query:   162 HKNSPPA-----FPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCG 216
             H  +PPA      P YAT  +RLR+F  WP  L+ +P  L EAGFFYTG+ D+T CF C 
Sbjct:    93 HDRAPPARSAAAHPQYATEAARLRTFAEWPRGLKQRPEELAEAGFFYTGQGDKTRCFCCD 152

Query:   217 GGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQVIGHKEVANDPITLQPLHYIAET 276
             GGLK WE  D PW +HARW+  C YV LVKG++F+ +V+    V  D          A+ 
Sbjct:   153 GGLKDWEPDDAPWQQHARWYDRCEYVLLVKGRDFVQRVMTEACVVRD----------ADN 202

Query:   277 STAVKPTACSQDDKRPEPNSDGRLCKICYQREMGVVFLPCGHIVAC 322
                ++  A   +       +D RLCKIC   E  V F+PCGH+VAC
Sbjct:   203 EPHIERPAVEAEV------ADDRLCKICLGAEKTVCFVPCGHVVAC 242

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|A9ULZ2 birc7-b "Baculoviral IAP repeat-containing protein 7-B" [Xenopus laevis (taxid:8355)]

 Score = 262 (97.3 bits), Expect = 6.5e-45, Sum P(3) = 6.5e-45
 Identities = 47/108 (43%), Positives = 62/108 (57%)

Query:   147 SQPNQVVSSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGK 206
             S   QV+  L      +   P +P  +  + RL SF +WP+ +   P  L  AGFFYTG 
Sbjct:   123 SVDGQVLGQLSGEEPDRTWEPVYPEMSEEQVRLGSFSTWPLDVPGSPEVLAGAGFFYTGH 182

Query:   207 ADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQV 254
              D   CF C GGL++WE+ DDPWTEHA+WF  C ++  VKG+ FI  V
Sbjct:   183 RDHVKCFHCDGGLQNWEQGDDPWTEHAKWFPMCDFLLQVKGEAFIRSV 230

GO:0005737 "cytoplasm" evidence=ISS

GO:0043027 "cysteine-type endopeptidase inhibitor activity involved in apoptotic process" evidence=ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISS

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=ISS

GO:0051865 "protein autoubiquitination" evidence=ISS

UNIPROTKB|A9JTP3 birc7 "Baculoviral IAP repeat-containing protein 7" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 248 (92.4 bits), Expect = 5.7e-44, Sum P(3) = 5.7e-44
 Identities = 47/108 (43%), Positives = 58/108 (53%)

Query:   147 SQPNQVVSSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGK 206
             S   Q++  L      +   P  P  A    RL SF +WP      P  L  AGFFYTG 
Sbjct:    84 SVDGQILGQLSGEEPDRTWEPVCPQMAGEGDRLGSFSTWPRYANGDPQQLAGAGFFYTGH 143

Query:   207 ADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQV 254
              D   CF C GGL++WE+ DDPWTEHA+WF  C ++  VKG+ FI  V
Sbjct:   144 RDHVKCFHCDGGLRNWEQGDDPWTEHAKWFPMCDFLLQVKGEAFIRSV 191

GO:0005737 "cytoplasm" evidence=ISS

GO:0043027 "cysteine-type endopeptidase inhibitor activity involved in apoptotic process" evidence=ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISS

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=ISS

GO:0051865 "protein autoubiquitination" evidence=ISS

FB|FBgn0015247 Iap2 "Inhibitor of apoptosis 2" [Drosophila melanogaster (taxid:7227)]

 Score = 245 (91.3 bits), Expect = 3.6e-43, Sum P(3) = 3.6e-43
 Identities = 42/102 (41%), Positives = 65/102 (63%)

Query:   155 SLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVT-LTEAGFFYTGKADQTLCF 213
             +L++LGI   + P  P YA  ++RLR+F  WPIS  ++P + L +AG +Y    DQ  CF
Sbjct:   192 NLDELGIQPTTLPLRPKYACVDARLRTFTDWPIS-NIQPASALAQAGLYYQKIGDQVRCF 250

Query:   214 RCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQVI 255
              C  GL+ W++ D+PW EHA+W   C +V L KG  ++++V+
Sbjct:   251 HCNIGLRSWQKEDEPWFEHAKWSPKCQFVLLAKGPAYVSEVL 292

GO:0043066 "negative regulation of apoptotic process" evidence=ISS;IMP;NAS;IDA;TAS

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0007423 "sensory organ development" evidence=IMP

GO:0006964 "positive regulation of biosynthetic process of antibacterial peptides active against Gram-negative bacteria" evidence=IMP

GO:0061057 "peptidoglycan recognition protein signaling pathway" evidence=IMP

GO:0033160 "positive regulation of protein import into nucleus, translocation" evidence=IMP

GO:0050829 "defense response to Gram-negative bacterium" evidence=IMP

GO:0043281 "regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IMP

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IDA

GO:0070534 "protein K63-linked ubiquitination" evidence=IDA

ZFIN|ZDB-GENE-030825-6 birc2 "baculoviral IAP repeat-containing 2" [Danio rerio (taxid:7955)]

 Score = 241 (89.9 bits), Expect = 6.3e-43, Sum P(3) = 6.3e-43
 Identities = 39/79 (49%), Positives = 53/79 (67%)

Query:   176 ESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARW 235
             E RL +F +WP  + ++P  L +AGF+Y G+ D   CF C GGL+ WE  DDPW EHA+W
Sbjct:   306 EERLLTFVNWPSRIPVRPDQLAKAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHAKW 365

Query:   236 FSSCPYVKLVKGQEFINQV 254
             F  C Y+   KGQEF++Q+
Sbjct:   366 FPRCEYLLQEKGQEFVHQI 384

GO:0005622 "intracellular" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q8JHV9 birc7-a "Baculoviral IAP repeat-containing protein 7-A" [Xenopus laevis (taxid:8355)]

 Score = 249 (92.7 bits), Expect = 2.0e-42, Sum P(3) = 2.0e-42
 Identities = 46/102 (45%), Positives = 58/102 (56%)

Query:   159 LGIHKNSPP------AFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLC 212
             LG H    P       +P  A    RL SF +WP+     P  L  +GFFYTG  D   C
Sbjct:   123 LGQHSGEEPDRTWESVYPEMAEERDRLDSFRNWPMYAHGNPEHLAGSGFFYTGHRDNVKC 182

Query:   213 FRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQV 254
             F C GGL++WE+ DDPWTEHA+WF  C ++  VKG+ FI +V
Sbjct:   183 FHCDGGLRNWEQGDDPWTEHAKWFPMCDFLLHVKGEAFIRRV 224

GO:0005737 "cytoplasm" evidence=ISS

GO:0043027 "cysteine-type endopeptidase inhibitor activity involved in apoptotic process" evidence=IDA

GO:0043066 "negative regulation of apoptotic process" evidence=IDA

GO:0043154 "negative regulation of cysteine-type endopeptidase activity involved in apoptotic process" evidence=IDA

GO:0051865 "protein autoubiquitination" evidence=IDA

UNIPROTKB|H0YEZ0 BIRC3 "Baculoviral IAP repeat-containing protein 3" [Homo sapiens (taxid:9606)]

 Score = 248 (92.4 bits), Expect = 2.4e-42, Sum P(3) = 2.4e-42
 Identities = 40/81 (49%), Positives = 54/81 (66%)

Query:   174 TYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHA 233
             T+ +R ++F +WP S+ + P  L  AGF+Y G +D   CF C GGL+ WE  DDPW +HA
Sbjct:   103 THAARFKTFFNWPSSVLVNPEQLASAGFYYVGNSDDVKCFCCDGGLRCWESGDDPWVQHA 162

Query:   234 RWFSSCPYVKLVKGQEFINQV 254
             +WF  C Y+  +KGQEFI QV
Sbjct:   163 KWFPRCEYLIRIKGQEFIRQV 183

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

MGI|MGI:1197007 Birc3 "baculoviral IAP repeat-containing 3" [Mus musculus (taxid:10090)]

 Score = 301 (111.0 bits), Expect = 1.8e-34, Sum P(2) = 1.8e-34
 Identities = 74/227 (32%), Positives = 118/227 (51%)

Query:    28 DKCSRKQNMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCG 86
             D    K + + E  RL ++ +++P    +S + +A AGFY+ G       +D VKC  CG
Sbjct:    16 DTFELKYDFSCELYRLSTY-SAFPRGVPVSERSLARAGFYYTGA------NDKVKCFCCG 68

Query:    87 IELGKWVQGDDPLKDHEKWSPNCWFLRRLKKGNT-ESAGYDTCGSLIIEPPKSKSEVSQS 145
             + L  W QGD P++ H K  P+C F++ L   N+ E++   +  S  +         S++
Sbjct:    69 LMLDNWKQGDSPMEKHRKLYPSCNFVQTLNPANSLEASPRPSLPSTAMSTMPLSFASSEN 128

Query:   146 CSQPNQVVSSL--EKLGIHKNSP-PAF---P-NYA--TYESRLRSFDSWPISLRLKPVTL 196
                 +   SS   + +    N   PA    P ++A  T ++RL ++++WP+S  L P  L
Sbjct:   129 TGYFSGSYSSFPSDPVNFRANQDCPALSTSPYHFAMNTEKARLLTYETWPLSF-LSPAKL 187

Query:   197 TEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVK 243
              +AGF+Y G  D+  CF C G L +WE  DD  +EH R F SCP++K
Sbjct:   188 AKAGFYYIGPGDRVACFACDGKLSNWERKDDAMSEHQRHFPSCPFLK 234

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0016874 "ligase activity" evidence=IEA

GO:0042326 "negative regulation of phosphorylation" evidence=IMP

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0043234 "protein complex" evidence=ISO

GO:0045121 "membrane raft" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051291 "protein heterooligomerization" evidence=ISO

GO:0060546 "negative regulation of necroptosis" evidence=IMP

GO:0070266 "necroptosis" evidence=IDA

GO:2000378 "negative regulation of reactive oxygen species metabolic process" evidence=IMP

UNIPROTKB|G3MXL2 LOC539314 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 274 (101.5 bits), Expect = 4.6e-31, Sum P(2) = 4.6e-31
 Identities = 64/193 (33%), Positives = 100/193 (51%)

Query:    63 AGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRRLKKGNT-E 121
             AGFY+ G       +D VKC  CG+ L  W QGD+P++ H++  P+C F++ L    + E
Sbjct:     3 AGFYYTG------VNDKVKCFCCGLMLDNWKQGDNPIEKHKQLYPSCSFIQNLVSVTSLE 56

Query:   122 SAGYDTCGSL----------IIEPPKSKSEVSQSCSQPNQVVS-SLEKLGIHKNSPPAFP 170
             S   +    +           +E  +S S  S S   PN + S ++E     + +P ++ 
Sbjct:    57 STSKNASSPMRNSFTHSLSPTLEHGRSFSG-SYSNLSPNPINSRAVEDFSPLRTNPYSYA 115

Query:   171 NYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWT 230
               +T E+R  ++  WP++  L P  L  AGF+Y G  D+  CF CGG L +WE  DD   
Sbjct:   116 -MSTEEARFLTYQMWPLTF-LSPSELARAGFYYIGPGDRVACFACGGTLNNWEPKDDAML 173

Query:   231 EHARWFSSCPYVK 243
             EH + F SCP+++
Sbjct:   174 EHQKHFPSCPFLE 186

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q24306	IAP1_DROME	6, ., 3, ., 2, ., -	0.3192	0.9197	0.6803	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	324
cd00022	69	cd00022, BIR, Baculoviral inhibition of apoptosis	2e-27
pfam00653	69	pfam00653, BIR, Inhibitor of Apoptosis domain	7e-27
smart00238	71	smart00238, BIR, Baculoviral inhibition of apoptos	2e-26
cd00022	69	cd00022, BIR, Baculoviral inhibition of apoptosis	2e-22
smart00238	71	smart00238, BIR, Baculoviral inhibition of apoptos	2e-21
pfam00653	69	pfam00653, BIR, Inhibitor of Apoptosis domain	5e-20
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	9e-06

>gnl|CDD|237989 cd00022, BIR, Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis proteins (IAPs) and other proteins

 Score =  101 bits (254), Expect = 2e-27
 Identities = 39/69 (56%), Positives = 51/69 (73%)

Query: 176 ESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARW 235
           E+RL++F +WPISL++ P  L EAGF+YTG+ D+  CF CG  LK+WE  DDPW EH RW
Sbjct: 1   EARLKTFKNWPISLKVTPEKLAEAGFYYTGRGDEVKCFFCGLELKNWEPGDDPWEEHKRW 60

Query: 236 FSSCPYVKL 244
             +CP+V L
Sbjct: 61  SPNCPFVLL 69

In higher eukaryotes, BIR domains inhibit apoptosis by acting as direct inhibitors of the caspase family of protease enzymes. In yeast, BIR domains are involved in regulating cytokinesis. This novel fold is stabilized by zinc tetrahedrally coordinated by one histidine and three cysteine residues and resembles a classical zinc finger. Length = 69

>gnl|CDD|216045 pfam00653, BIR, Inhibitor of Apoptosis domain

 Score =  100 bits (250), Expect = 7e-27
 Identities = 34/69 (49%), Positives = 44/69 (63%), Gaps = 3/69 (4%)

Query: 178 RLRSFDSWPISLRLKPVT---LTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHAR 234
           RL +F +WPI+L+    +   L EAGF+YTG  D+  CF CG  L +WE  DDPW EH R
Sbjct: 1   RLATFKNWPIALKQAKPSPEKLAEAGFYYTGTGDRVRCFYCGLELDNWEPDDDPWEEHKR 60

Query: 235 WFSSCPYVK 243
           W  +CP+V 
Sbjct: 61  WSPNCPFVL 69

BIR stands for 'Baculovirus Inhibitor of apoptosis protein Repeat'. It is found repeated in inhibitor of apoptosis proteins (IAPs), and in fact it is also known as IAP repeat. These domains characteristically have a number of invariant residues, including 3 conserved cysteines and one conserved histidine that coordinate a zinc ion. They are usually made up of 4-5 alpha helices and a three-stranded beta-sheet. BIR is also found in other proteins known as BIR-domain-containing proteins (BIRPs), such as Survivin. Length = 69

>gnl|CDD|197595 smart00238, BIR, Baculoviral inhibition of apoptosis protein repeat

 Score = 98.9 bits (247), Expect = 2e-26
 Identities = 34/71 (47%), Positives = 48/71 (67%)

Query: 174 TYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHA 233
           + E+RL++F +WP + +  P  L EAGF+YTG  D+  CF CGG L +WE  DDPW EH 
Sbjct: 1   SEEARLKTFQNWPYNSKCTPEQLAEAGFYYTGVGDEVKCFFCGGELDNWEPGDDPWEEHK 60

Query: 234 RWFSSCPYVKL 244
           +W  +CP+V+ 
Sbjct: 61  KWSPNCPFVRN 71

Domain found in inhibitor of apoptosis proteins (IAPs) and other proteins. Acts as a direct inhibitor of caspase enzymes. Length = 71

>gnl|CDD|237989 cd00022, BIR, Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis proteins (IAPs) and other proteins

 Score = 88.5 bits (220), Expect = 2e-22
 Identities = 34/74 (45%), Positives = 51/74 (68%), Gaps = 8/74 (10%)

Query: 41  DRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPL 99
            RL +FKN WP++  ++ +++A AGFY+ G+       D+VKC FCG+EL  W  GDDP 
Sbjct: 2   ARLKTFKN-WPISLKVTPEKLAEAGFYYTGRG------DEVKCFFCGLELKNWEPGDDPW 54

Query: 100 KDHEKWSPNCWFLR 113
           ++H++WSPNC F+ 
Sbjct: 55  EEHKRWSPNCPFVL 68

In higher eukaryotes, BIR domains inhibit apoptosis by acting as direct inhibitors of the caspase family of protease enzymes. In yeast, BIR domains are involved in regulating cytokinesis. This novel fold is stabilized by zinc tetrahedrally coordinated by one histidine and three cysteine residues and resembles a classical zinc finger. Length = 69

>gnl|CDD|197595 smart00238, BIR, Baculoviral inhibition of apoptosis protein repeat

 Score = 86.2 bits (214), Expect = 2e-21
 Identities = 36/74 (48%), Positives = 48/74 (64%), Gaps = 8/74 (10%)

Query: 42  RLDSFKNSWP-LTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLK 100
           RL +F+N WP  +  + +Q+A AGFY+ G        D+VKC FCG EL  W  GDDP +
Sbjct: 5   RLKTFQN-WPYNSKCTPEQLAEAGFYYTGVG------DEVKCFFCGGELDNWEPGDDPWE 57

Query: 101 DHEKWSPNCWFLRR 114
           +H+KWSPNC F+R 
Sbjct: 58  EHKKWSPNCPFVRN 71

Domain found in inhibitor of apoptosis proteins (IAPs) and other proteins. Acts as a direct inhibitor of caspase enzymes. Length = 71

>gnl|CDD|216045 pfam00653, BIR, Inhibitor of Apoptosis domain

 Score = 81.9 bits (203), Expect = 5e-20
 Identities = 32/76 (42%), Positives = 46/76 (60%), Gaps = 11/76 (14%)

Query: 42  RLDSFKNSWPLTY----LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDD 97
           RL +FKN WP+       S +++A AGFY+ G        D V+C +CG+EL  W   DD
Sbjct: 1   RLATFKN-WPIALKQAKPSPEKLAEAGFYYTGTG------DRVRCFYCGLELDNWEPDDD 53

Query: 98  PLKDHEKWSPNCWFLR 113
           P ++H++WSPNC F+ 
Sbjct: 54  PWEEHKRWSPNCPFVL 69

BIR stands for 'Baculovirus Inhibitor of apoptosis protein Repeat'. It is found repeated in inhibitor of apoptosis proteins (IAPs), and in fact it is also known as IAP repeat. These domains characteristically have a number of invariant residues, including 3 conserved cysteines and one conserved histidine that coordinate a zinc ion. They are usually made up of 4-5 alpha helices and a three-stranded beta-sheet. BIR is also found in other proteins known as BIR-domain-containing proteins (BIRPs), such as Survivin. Length = 69

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 42.0 bits (99), Expect = 9e-06
 Identities = 14/26 (53%), Positives = 17/26 (65%)

Query: 297 DGRLCKICYQREMGVVFLPCGHIVAC 322
           +  LC IC +R   VVFLPCGH+  C
Sbjct: 1   EDDLCVICLERPRNVVFLPCGHLCLC 26

Length = 49

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	324
KOG1101|consensus	147		99.94
smart00238	71	BIR Baculoviral inhibition of apoptosis protein re	99.88
KOG1101|consensus	147		99.87
cd00022	69	BIR Baculoviral inhibition of apoptosis protein re	99.87
PF00653	70	BIR: Inhibitor of Apoptosis domain; InterPro: IPR0	99.87
smart00238	71	BIR Baculoviral inhibition of apoptosis protein re	99.86
cd00022	69	BIR Baculoviral inhibition of apoptosis protein re	99.86
PF00653	70	BIR: Inhibitor of Apoptosis domain; InterPro: IPR0	99.84
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	97.83
KOG4275|consensus	350		97.67
KOG4265|consensus	349		97.61
KOG1571|consensus	355		97.25
KOG1100|consensus	207		96.38
KOG4172|consensus	62		96.12
PF07967	133	zf-C3HC: C3HC zinc finger-like ; InterPro: IPR0129	96.06
PF07967	133	zf-C3HC: C3HC zinc finger-like ; InterPro: IPR0129	95.78
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	94.76
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	93.78
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	92.79
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	90.79
KOG4692|consensus	489		88.77
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	88.4
KOG1785|consensus	563		86.09
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	84.66
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	84.15
PF14634	44	zf-RING_5: zinc-RING finger domain	81.93
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	81.18
KOG0823|consensus	230		80.17

>KOG1101|consensus

Probab=99.94  E-value=7.1e-28  Score=206.92  Aligned_cols=94  Identities=48%  Similarity=0.989  Sum_probs=88.6

Q ss_pred             CCCCCCCCCCHHHHHhccccCCCCC--CCChHHHHHcCCcccCCCCceEEeeeCCcccCCCCCCChHHHHHhhcCCCchh
Q psy3967         165 SPPAFPNYATYESRLRSFDSWPISL--RLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYV  242 (324)
Q Consensus       165 ~~p~~~~y~~~~~Rl~SF~~Wp~~~--~~~~~~LA~AGFyytg~~D~v~Cf~Cg~~l~~W~~~DdP~~eH~~~~p~C~f~  242 (324)
                      ..|.++.|..+++|++||.+||+..  .+.|+.||+|||||+|..|.++||+|+++|.+|+++||||+||++|+|.|.|+
T Consensus         5 ~~~~~~~~~~~~aRl~TF~~Wp~~~~~~c~p~~lA~AGFy~~g~~D~~~Cf~C~~~L~~We~~DDPW~EH~k~~p~C~F~   84 (147)
T KOG1101|consen    5 FDPQNPKMAREEARLKTFKNWPYSDMDKCTPEQLAEAGFYYTGKQDCVKCFFCSGGLDDWEPGDDPWEEHAKWSPECEFL   84 (147)
T ss_pred             ccccchhHHHHHHHHhhhhcCCCCCCCCcCHHHHHhCCceeeCCCCceECcccCcccccCCCCCCcHHHHHhhCCCCcee
Confidence            4567888999999999999999986  68999999999999999999999999999999999999999999999999999


Q ss_pred             hhccchhHHHhhhccc
Q psy3967         243 KLVKGQEFINQVIGHK  258 (324)
Q Consensus       243 ~~~kg~~~i~~v~~~~  258 (324)
                      +..||++|+..|+...
T Consensus        85 ~~~k~~e~~~~v~~~~  100 (147)
T KOG1101|consen   85 KLKKGREFLGTVQSTA  100 (147)
T ss_pred             ecccchhhhhHHHHhH
Confidence            9999999999998654

>smart00238 BIR Baculoviral inhibition of apoptosis protein repeat

Probab=99.88  E-value=3.2e-23  Score=157.07  Aligned_cols=70  Identities=50%  Similarity=1.208  Sum_probs=65.4

Q ss_pred             CHHHHHhccccCCCCCCCChHHHHHcCCcccCCCCceEEeeeCCcccCCCCCCChHHHHHhhcCCCchhh
Q psy3967         174 TYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVK  243 (324)
Q Consensus       174 ~~~~Rl~SF~~Wp~~~~~~~~~LA~AGFyytg~~D~v~Cf~Cg~~l~~W~~~DdP~~eH~~~~p~C~f~~  243 (324)
                      ++++|++||.+||+...+.++.||+|||||+|.+|.|+|++|++.|.+|+++|+||++|++++|+|.|++
T Consensus         1 ~~~~R~~sF~~w~~~~~~~~~~LA~~Gfyy~~~~d~v~C~~C~~~l~~w~~~d~p~~~H~~~~p~C~fv~   70 (71)
T smart00238        1 SEEARLKTFQNWPYNSKLTPEQLAEAGFYYTGVGDEVKCFFCGGELDNWEPGDDPWEEHKKWSPNCPFVR   70 (71)
T ss_pred             CHHHHHHHHHcCCCCccCCHHHHHHcCCeECCCCCEEEeCCCCCCcCCCCCCCCHHHHHhHhCcCCcCcc
Confidence            3689999999999744578999999999999999999999999999999999999999999999999985

Domain found in inhibitor of apoptosis proteins (IAPs) and other proteins. Acts as a direct inhibitor of caspase enzymes.

>KOG1101|consensus

Probab=99.87  E-value=5.4e-23  Score=176.75  Aligned_cols=81  Identities=47%  Similarity=0.929  Sum_probs=74.9

Q ss_pred             cccccCCcCHHHHHhccCCCCCCCC---cCHHHHHHcCceecCCCCCCCCCCeEeecccCceeccccCCCChhhhhcccC
Q psy3967          30 CSRKQNMTLECDRLDSFKNSWPLTY---LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWS  106 (324)
Q Consensus        30 ~~~~~~~~~e~~RL~SF~~~Wp~~~---~~~~~LA~aGFyy~g~~~~~~~~D~V~C~~C~~~l~~w~~~Ddp~~eH~~~s  106 (324)
                      +.....|..+++||+||.+ ||++.   +.|+.||+|||||+|.      +|.|+||+|++.|.+|+++||||.||.+|+
T Consensus         6 ~~~~~~~~~~~aRl~TF~~-Wp~~~~~~c~p~~lA~AGFy~~g~------~D~~~Cf~C~~~L~~We~~DDPW~EH~k~~   78 (147)
T KOG1101|consen    6 DPQNPKMAREEARLKTFKN-WPYSDMDKCTPEQLAEAGFYYTGK------QDCVKCFFCSGGLDDWEPGDDPWEEHAKWS   78 (147)
T ss_pred             cccchhHHHHHHHHhhhhc-CCCCCCCCcCHHHHHhCCceeeCC------CCceECcccCcccccCCCCCCcHHHHHhhC
Confidence            3456679999999999999 99985   8999999999999999      899999999999999999999999999999


Q ss_pred             CCCcccccccc
Q psy3967         107 PNCWFLRRLKK  117 (324)
Q Consensus       107 P~C~f~~~~~~  117 (324)
                      |.|.|++..+.
T Consensus        79 p~C~F~~~~k~   89 (147)
T KOG1101|consen   79 PECEFLKLKKG   89 (147)
T ss_pred             CCCceeecccc
Confidence            99999987643

>cd00022 BIR Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis proteins (IAPs) and other proteins

Probab=99.87  E-value=1.1e-22  Score=153.18  Aligned_cols=68  Identities=56%  Similarity=1.263  Sum_probs=64.3

Q ss_pred             HHHHhccccCCCCCCCChHHHHHcCCcccCCCCceEEeeeCCcccCCCCCCChHHHHHhhcCCCchhh
Q psy3967         176 ESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVK  243 (324)
Q Consensus       176 ~~Rl~SF~~Wp~~~~~~~~~LA~AGFyytg~~D~v~Cf~Cg~~l~~W~~~DdP~~eH~~~~p~C~f~~  243 (324)
                      ++|++||.+||++....++.||+|||||+|.+|.++|++|++.|.+|+++|+||++|.+++|+|+|++
T Consensus         1 ~~R~~TF~~w~~~~~~~~~~La~~Gfyy~~~~d~v~C~~C~~~~~~w~~~d~p~~~H~~~~p~C~fv~   68 (69)
T cd00022           1 EARLKTFKNWPISLKVTPEKLAEAGFYYTGRGDEVKCFFCGLELKNWEPGDDPWEEHKRWSPNCPFVL   68 (69)
T ss_pred             ChHHHHHHcCCCCccCCHHHHHHcCCeEcCCCCEEEeCCCCCCccCCCCCCCHHHHHhHhCcCCcCcc
Confidence            36999999999985578999999999999999999999999999999999999999999999999986

In higher eukaryotes, BIR domains inhibit apoptosis by acting as direct inhibitors of the caspase family of protease enzymes. In yeast, BIR domains are involved in regulating cytokinesis. This novel fold is stabilized by zinc tetrahedrally coordinated by one histidine and three cysteine residues and resembles a classical zinc finger.

>PF00653 BIR: Inhibitor of Apoptosis domain; InterPro: IPR001370 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=99.87  E-value=7.5e-23  Score=155.05  Aligned_cols=66  Identities=52%  Similarity=1.115  Sum_probs=58.3

Q ss_pred             HHhccc-cCCCCC---CCChHHHHHcCCcccCCCCceEEeeeCCcccCCCCCCChHHHHHhhcCCCchhh
Q psy3967         178 RLRSFD-SWPISL---RLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVK  243 (324)
Q Consensus       178 Rl~SF~-~Wp~~~---~~~~~~LA~AGFyytg~~D~v~Cf~Cg~~l~~W~~~DdP~~eH~~~~p~C~f~~  243 (324)
                      |++||. +||+..   .+.+++||+|||||+|.+|+|+|++|++.|.+|+++||||++|.+++|+|+|++
T Consensus         1 Rl~SF~~~wp~~~~~~~~~~~~LA~aGFyy~~~~d~v~C~~C~~~l~~w~~~Ddp~~~H~~~sp~C~f~k   70 (70)
T PF00653_consen    1 RLKSFRSNWPHSNDHDPVSPEKLARAGFYYTGTGDRVRCFYCGLELDNWEPNDDPWEEHKRHSPNCPFVK   70 (70)
T ss_dssp             HHHGGTTGSSTTTTTSSSHHHHHHHTTEEEESSTTEEEETTTTEEEES-STT--HHHHHHHHSTTBHHHH
T ss_pred             ChhHHCCcccCccccCCCCHHHHHHCCCEEcCCCCEEEEeccCCEEeCCCCCCCHHHHHHHHCcCCeecC
Confidence            899995 599753   467899999999999999999999999999999999999999999999999984

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The baculovirus inhibitor of apoptosis protein repeat (BIR) is a domain of tandem repeats separated by a variable length linker that seems to confer cell death-preventing activity [, ]. The BIR domains characterise the Inhibitor of Apoptosis (IAP) family of proteins (MEROPS proteinase inhibitor family I32, clan IV) that suppress apoptosis by interacting with and inhibiting the enzymatic activity of both initiator and effector caspases (MEROPS peptidase family C14, IPR002398 from INTERPRO). Several distinct mammalian IAPs including XIAP, c-IAP1, c-IAP2, and ML-IAP, have been identified, and they all exhibit antiapoptotic activity in cell culture. The functional unit in each IAP protein is the baculoviral IAP repeat (BIR), which contains approximately 80 amino acids folded around a zinc atom. Most mammalian IAPs have more than one BIR domain, with the different BIR domains performing distinct functions. For example, in XIAP, the third BIR domain (BIR3) potently inhibits the catalytic activity of caspase-9, whereas the linker sequences immediately preceding the second BIR domain (BIR2) selectively targets caspase-3 or -7. The first-recognised members of family MEROPS inhibitor family I32 were viral proteins that inhibited the apoptosis of infected cells: Cp-IAP from Cydia pomonella granulosis virus (CpGV) [] and Op-IAP from Orgyia pseudotsugata multicapsid polyhedrosis virus(OpMNPV) []. The discovery of homologous proteins in mammals followed soon after with the recognition that mutations in the gene for neuronal apoptosis inhibitory protein (NIAP) underlie spinal muscular atrophy []. The inhibitors in family I32 all possess one or more 80-residue domains known as BIR (baculovirus inhibitor repeat) domains and have accordingly been termed 'BIR-containing' or 'BIRC' proteins as well as IAP proteins. The mechanism of inhibition of caspases by the IAP proteins is complex, and reactive site residues cannot yet be identified with any confidence. Despite the conservation of the BIR or IAP (inhibitor of apoptosis) domains throughout the family it seems clear that other parts of the molecules also make essential contributions to inhibitory activity. Homologs of most components in the mammalian apoptotic pathway have been identified in fruit flies. The Drosophila Apaf-1, known as Dapaf-1, HAC-1 or Dark, shares significant sequence similarity with its mammalian counterpart, and is critically important for the activation of the Drosophila initiator caspase Dronc. Dronc, in turn, cleaves and activates the effector caspase DrICE. The Drosophila IAP, DIAP1, binds to and in-activates both DrICE and Dronc through its BIR1 and BIR2 domains. During apoptosis, the anti-death function of DIAP1 is countered by at least four pro-apoptotic proteins, Reaper, Hid, Grim, and sickle, through direct physical interactions. These four proteins represent the functional homologs of the mammalian protein Smac, and they all share a conserved IAP-binding motif at their N termini. The three proteins Reaper, Hid, and Grim are collectively referred to as the RHG proteins [, ]. Both XIAP and DIAP1 contain a RING domain at their C termini, and can act as an E3 ubiquitin ligase. Indeed, both XIAP and DIAP1 have been shown to promote self-ubiquitination and degradation as well as to negatively regulate the target caspases. Nonetheless, important differences exist between XIAP and DIAP1. The primary function of XIAP is thought to inhibit the catalytic activities of caspases; to what extent the ubiquitinating activity of XIAP contributes to its function remains unclear. For DIAP1, however, the ubiquitinating activity appears to be essential for its function. Recently a Drosophila p53 protein has been identified that mediates apoptosis via a novel pathway involving the activation of the Reaper gene and subsequent inhibition of the inhibitors of apoptosis (IAPs). CIAP1, a major mammalian homologue of Drosophila IAPs, is irreversibly inhibited (cleaved) during p53-dependent apoptosis and this cleavage is mediated by a serine protease. Serine protease inhibitors that block CIAP1 cleavage inhibit p53-dependent apoptosis. Furthermore, activation of the p53 protein increases the transcription of the HTRA2 gene, which encodes a serine protease that interacts with CIAP1 and potentiates apoptosis. Therefore mammalian p53 protein activates apoptosis through a novel pathway functionally similar to that in Drosophila, which involves HTRA2 and subsequent inhibition of CIAP1 by cleavage [].; GO: 0005622 intracellular; PDB: 3HL5_B 3UW5_A 3CM7_A 1G3F_A 1G73_C 3G76_G 3CM2_C 2VSL_A 2OPZ_B 3CLX_A ....

>smart00238 BIR Baculoviral inhibition of apoptosis protein repeat

Probab=99.86  E-value=1.9e-22  Score=152.76  Aligned_cols=69  Identities=55%  Similarity=1.172  Sum_probs=65.2

Q ss_pred             CHHHHHhccCCCCCC-CCcCHHHHHHcCceecCCCCCCCCCCeEeecccCceeccccCCCChhhhhcccCCCCcccc
Q psy3967          38 LECDRLDSFKNSWPL-TYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLR  113 (324)
Q Consensus        38 ~e~~RL~SF~~~Wp~-~~~~~~~LA~aGFyy~g~~~~~~~~D~V~C~~C~~~l~~w~~~Ddp~~eH~~~sP~C~f~~  113 (324)
                      ++++||+||.+ ||+ ....++.||++||||+|.      +|.|+|++|+++|.+|+++|+|+++|++++|.|+|++
T Consensus         1 ~~~~R~~sF~~-w~~~~~~~~~~LA~~Gfyy~~~------~d~v~C~~C~~~l~~w~~~d~p~~~H~~~~p~C~fv~   70 (71)
T smart00238        1 SEEARLKTFQN-WPYNSKLTPEQLAEAGFYYTGV------GDEVKCFFCGGELDNWEPGDDPWEEHKKWSPNCPFVR   70 (71)
T ss_pred             CHHHHHHHHHc-CCCCccCCHHHHHHcCCeECCC------CCEEEeCCCCCCcCCCCCCCCHHHHHhHhCcCCcCcc
Confidence            47899999998 996 567999999999999998      8999999999999999999999999999999999986

Domain found in inhibitor of apoptosis proteins (IAPs) and other proteins. Acts as a direct inhibitor of caspase enzymes.

>cd00022 BIR Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis proteins (IAPs) and other proteins

Probab=99.86  E-value=3.8e-22  Score=150.32  Aligned_cols=67  Identities=51%  Similarity=1.220  Sum_probs=64.1

Q ss_pred             HHHHhccCCCCCCC-CcCHHHHHHcCceecCCCCCCCCCCeEeecccCceeccccCCCChhhhhcccCCCCcccc
Q psy3967          40 CDRLDSFKNSWPLT-YLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLR  113 (324)
Q Consensus        40 ~~RL~SF~~~Wp~~-~~~~~~LA~aGFyy~g~~~~~~~~D~V~C~~C~~~l~~w~~~Ddp~~eH~~~sP~C~f~~  113 (324)
                      ++||+||.+ ||++ ...+++||++||||+|.      +|.|+|++|++++.+|+++|+|+++|++++|.|+|++
T Consensus         1 ~~R~~TF~~-w~~~~~~~~~~La~~Gfyy~~~------~d~v~C~~C~~~~~~w~~~d~p~~~H~~~~p~C~fv~   68 (69)
T cd00022           1 EARLKTFKN-WPISLKVTPEKLAEAGFYYTGR------GDEVKCFFCGLELKNWEPGDDPWEEHKRWSPNCPFVL   68 (69)
T ss_pred             ChHHHHHHc-CCCCccCCHHHHHHcCCeEcCC------CCEEEeCCCCCCccCCCCCCCHHHHHhHhCcCCcCcc
Confidence            479999998 9998 68999999999999999      8999999999999999999999999999999999985

In higher eukaryotes, BIR domains inhibit apoptosis by acting as direct inhibitors of the caspase family of protease enzymes. In yeast, BIR domains are involved in regulating cytokinesis. This novel fold is stabilized by zinc tetrahedrally coordinated by one histidine and three cysteine residues and resembles a classical zinc finger.

>PF00653 BIR: Inhibitor of Apoptosis domain; InterPro: IPR001370 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=99.84  E-value=8.1e-22  Score=149.40  Aligned_cols=66  Identities=45%  Similarity=1.102  Sum_probs=57.5

Q ss_pred             HHhccCCCCCCC----CcCHHHHHHcCceecCCCCCCCCCCeEeecccCceeccccCCCChhhhhcccCCCCcccc
Q psy3967          42 RLDSFKNSWPLT----YLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLR  113 (324)
Q Consensus        42 RL~SF~~~Wp~~----~~~~~~LA~aGFyy~g~~~~~~~~D~V~C~~C~~~l~~w~~~Ddp~~eH~~~sP~C~f~~  113 (324)
                      ||+||...||+.    .+++++||+|||||+|.      +|+|+|++|+++|.+|+++|||+++|++++|+|+|++
T Consensus         1 Rl~SF~~~wp~~~~~~~~~~~~LA~aGFyy~~~------~d~v~C~~C~~~l~~w~~~Ddp~~~H~~~sp~C~f~k   70 (70)
T PF00653_consen    1 RLKSFRSNWPHSNDHDPVSPEKLARAGFYYTGT------GDRVRCFYCGLELDNWEPNDDPWEEHKRHSPNCPFVK   70 (70)
T ss_dssp             HHHGGTTGSSTTTTTSSSHHHHHHHTTEEEESS------TTEEEETTTTEEEES-STT--HHHHHHHHSTTBHHHH
T ss_pred             ChhHHCCcccCccccCCCCHHHHHHCCCEEcCC------CCEEEEeccCCEEeCCCCCCCHHHHHHHHCcCCeecC
Confidence            999995339964    36899999999999999      9999999999999999999999999999999999973

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The baculovirus inhibitor of apoptosis protein repeat (BIR) is a domain of tandem repeats separated by a variable length linker that seems to confer cell death-preventing activity [, ]. The BIR domains characterise the Inhibitor of Apoptosis (IAP) family of proteins (MEROPS proteinase inhibitor family I32, clan IV) that suppress apoptosis by interacting with and inhibiting the enzymatic activity of both initiator and effector caspases (MEROPS peptidase family C14, IPR002398 from INTERPRO). Several distinct mammalian IAPs including XIAP, c-IAP1, c-IAP2, and ML-IAP, have been identified, and they all exhibit antiapoptotic activity in cell culture. The functional unit in each IAP protein is the baculoviral IAP repeat (BIR), which contains approximately 80 amino acids folded around a zinc atom. Most mammalian IAPs have more than one BIR domain, with the different BIR domains performing distinct functions. For example, in XIAP, the third BIR domain (BIR3) potently inhibits the catalytic activity of caspase-9, whereas the linker sequences immediately preceding the second BIR domain (BIR2) selectively targets caspase-3 or -7. The first-recognised members of family MEROPS inhibitor family I32 were viral proteins that inhibited the apoptosis of infected cells: Cp-IAP from Cydia pomonella granulosis virus (CpGV) [] and Op-IAP from Orgyia pseudotsugata multicapsid polyhedrosis virus(OpMNPV) []. The discovery of homologous proteins in mammals followed soon after with the recognition that mutations in the gene for neuronal apoptosis inhibitory protein (NIAP) underlie spinal muscular atrophy []. The inhibitors in family I32 all possess one or more 80-residue domains known as BIR (baculovirus inhibitor repeat) domains and have accordingly been termed 'BIR-containing' or 'BIRC' proteins as well as IAP proteins. The mechanism of inhibition of caspases by the IAP proteins is complex, and reactive site residues cannot yet be identified with any confidence. Despite the conservation of the BIR or IAP (inhibitor of apoptosis) domains throughout the family it seems clear that other parts of the molecules also make essential contributions to inhibitory activity. Homologs of most components in the mammalian apoptotic pathway have been identified in fruit flies. The Drosophila Apaf-1, known as Dapaf-1, HAC-1 or Dark, shares significant sequence similarity with its mammalian counterpart, and is critically important for the activation of the Drosophila initiator caspase Dronc. Dronc, in turn, cleaves and activates the effector caspase DrICE. The Drosophila IAP, DIAP1, binds to and in-activates both DrICE and Dronc through its BIR1 and BIR2 domains. During apoptosis, the anti-death function of DIAP1 is countered by at least four pro-apoptotic proteins, Reaper, Hid, Grim, and sickle, through direct physical interactions. These four proteins represent the functional homologs of the mammalian protein Smac, and they all share a conserved IAP-binding motif at their N termini. The three proteins Reaper, Hid, and Grim are collectively referred to as the RHG proteins [, ]. Both XIAP and DIAP1 contain a RING domain at their C termini, and can act as an E3 ubiquitin ligase. Indeed, both XIAP and DIAP1 have been shown to promote self-ubiquitination and degradation as well as to negatively regulate the target caspases. Nonetheless, important differences exist between XIAP and DIAP1. The primary function of XIAP is thought to inhibit the catalytic activities of caspases; to what extent the ubiquitinating activity of XIAP contributes to its function remains unclear. For DIAP1, however, the ubiquitinating activity appears to be essential for its function. Recently a Drosophila p53 protein has been identified that mediates apoptosis via a novel pathway involving the activation of the Reaper gene and subsequent inhibition of the inhibitors of apoptosis (IAPs). CIAP1, a major mammalian homologue of Drosophila IAPs, is irreversibly inhibited (cleaved) during p53-dependent apoptosis and this cleavage is mediated by a serine protease. Serine protease inhibitors that block CIAP1 cleavage inhibit p53-dependent apoptosis. Furthermore, activation of the p53 protein increases the transcription of the HTRA2 gene, which encodes a serine protease that interacts with CIAP1 and potentiates apoptosis. Therefore mammalian p53 protein activates apoptosis through a novel pathway functionally similar to that in Drosophila, which involves HTRA2 and subsequent inhibition of CIAP1 by cleavage [].; GO: 0005622 intracellular; PDB: 3HL5_B 3UW5_A 3CM7_A 1G3F_A 1G73_C 3G76_G 3CM2_C 2VSL_A 2OPZ_B 3CLX_A ....

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=97.83  E-value=1e-05  Score=57.01  Aligned_cols=26  Identities=42%  Similarity=1.072  Sum_probs=22.6

Q ss_pred             cccccccccccccEEEecCCceeecc
Q psy3967         298 GRLCKICYQREMGVVFLPCGHIVACV  323 (324)
Q Consensus       298 ~~~C~iC~~~~~~~~~~PCgH~~~C~  323 (324)
                      +.+|.||+++.++++|+||||++.|.
T Consensus         2 ~~~C~iC~~~~~~~~~~pCgH~~~C~   27 (50)
T PF13920_consen    2 DEECPICFENPRDVVLLPCGHLCFCE   27 (50)
T ss_dssp             HSB-TTTSSSBSSEEEETTCEEEEEH
T ss_pred             cCCCccCCccCCceEEeCCCChHHHH
Confidence            46899999999999999999998774

...

>KOG4275|consensus

Probab=97.67  E-value=1.3e-05  Score=75.41  Aligned_cols=26  Identities=50%  Similarity=1.131  Sum_probs=24.9

Q ss_pred             cccccccccccccEEEecCCceeecc
Q psy3967         298 GRLCKICYQREMGVVFLPCGHIVACV  323 (324)
Q Consensus       298 ~~~C~iC~~~~~~~~~~PCgH~~~C~  323 (324)
                      ..+|+|||+.++|.|||+|||.|+|.
T Consensus       300 ~~LC~ICmDaP~DCvfLeCGHmVtCt  325 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVFLECGHMVTCT  325 (350)
T ss_pred             HHHHHHHhcCCcceEEeecCcEEeeh
Confidence            68999999999999999999999996

>KOG4265|consensus

Probab=97.61  E-value=2e-05  Score=76.20  Aligned_cols=28  Identities=36%  Similarity=0.841  Sum_probs=25.7

Q ss_pred             ccccccccccccccEEEecCCceeeccC
Q psy3967         297 DGRLCKICYQREMGVVFLPCGHIVACVI  324 (324)
Q Consensus       297 ~~~~C~iC~~~~~~~~~~PCgH~~~C~~  324 (324)
                      ..++|+||+...||+++|||+|+|.|.+
T Consensus       289 ~gkeCVIClse~rdt~vLPCRHLCLCs~  316 (349)
T KOG4265|consen  289 SGKECVICLSESRDTVVLPCRHLCLCSG  316 (349)
T ss_pred             CCCeeEEEecCCcceEEecchhhehhHh
Confidence            4688999999999999999999999963

>KOG1571|consensus

Probab=97.25  E-value=0.00018  Score=69.83  Aligned_cols=29  Identities=34%  Similarity=0.961  Sum_probs=25.8

Q ss_pred             CCccccccccccccccEEEecCCceeecc
Q psy3967         295 NSDGRLCKICYQREMGVVFLPCGHIVACV  323 (324)
Q Consensus       295 ~~~~~~C~iC~~~~~~~~~~PCgH~~~C~  323 (324)
                      ......|+||.+++.+++|+||||+|||.
T Consensus       302 ~~~p~lcVVcl~e~~~~~fvpcGh~ccct  330 (355)
T KOG1571|consen  302 LPQPDLCVVCLDEPKSAVFVPCGHVCCCT  330 (355)
T ss_pred             cCCCCceEEecCCccceeeecCCcEEEch
Confidence            34467899999999999999999999985

>KOG1100|consensus

Probab=96.38  E-value=0.0018  Score=59.17  Aligned_cols=26  Identities=46%  Similarity=1.018  Sum_probs=23.8

Q ss_pred             ccccccccccccEEEecCCceeeccC
Q psy3967         299 RLCKICYQREMGVVFLPCGHIVACVI  324 (324)
Q Consensus       299 ~~C~iC~~~~~~~~~~PCgH~~~C~~  324 (324)
                      ..|+.|.++++.|+++||.|+|.|.+
T Consensus       159 ~~Cr~C~~~~~~VlllPCrHl~lC~~  184 (207)
T KOG1100|consen  159 RSCRKCGEREATVLLLPCRHLCLCGI  184 (207)
T ss_pred             ccceecCcCCceEEeecccceEeccc
Confidence            33999999999999999999999974

>KOG4172|consensus

Probab=96.12  E-value=0.00047  Score=49.56  Aligned_cols=25  Identities=36%  Similarity=1.014  Sum_probs=23.3

Q ss_pred             ccccccccccccEEEecCCceeecc
Q psy3967         299 RLCKICYQREMGVVFLPCGHIVACV  323 (324)
Q Consensus       299 ~~C~iC~~~~~~~~~~PCgH~~~C~  323 (324)
                      .+|.||+++.+|.|+.-|||+|.|.
T Consensus         8 dECTICye~pvdsVlYtCGHMCmCy   32 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTCGHMCMCY   32 (62)
T ss_pred             cceeeeccCcchHHHHHcchHHhHH
Confidence            5699999999999999999999884

>PF07967 zf-C3HC: C3HC zinc finger-like ; InterPro: IPR012935 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.06  E-value=0.0077  Score=50.98  Aligned_cols=48  Identities=31%  Similarity=0.529  Sum_probs=39.0

Q ss_pred             CcCHHHHHhccCC-CCCCC--CcCHHHHHHcCceecCCCCCCCCCCeEeecccCceec
Q psy3967          36 MTLECDRLDSFKN-SWPLT--YLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELG   90 (324)
Q Consensus        36 ~~~e~~RL~SF~~-~Wp~~--~~~~~~LA~aGFyy~g~~~~~~~~D~V~C~~C~~~l~   90 (324)
                      ...+-.||+||.. +|...  .+++-.+|+.|+...+       .|.++|..|+..+.
T Consensus         4 r~~~l~RL~Tf~~~~W~~kp~~lspl~cA~~GW~~~~-------~d~l~C~~C~~~l~   54 (133)
T PF07967_consen    4 REDFLRRLETFKSLTWFPKPPWLSPLECARRGWICVS-------KDMLKCESCGARLC   54 (133)
T ss_pred             HHHHHHHHHHcccccccCCCcccCHHHHHHcCCCcCC-------CCEEEeCCCCCEEE
Confidence            3456799999986 58432  3899999999998866       58999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This zinc-finger like domain is distributed throughout the eukaryotic kingdom in NIPA (Nuclear interacting partner of ALK) and other proteins. NIPA is thought to perform an antiapoptotic role in nucleophosmin-anaplastic lymphoma kinase (ALK) mediated signalling events []. The domain is often repeated, with the second domain usually containing a large insert (approximately 90 residues) after the first three cysteine residues. The Schizosaccharomyces pombe protein containing this domain (O94506 from SWISSPROT) is involved in mRNA export from the nucleus []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005634 nucleus

>PF07967 zf-C3HC: C3HC zinc finger-like ; InterPro: IPR012935 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.78  E-value=0.0088  Score=50.64  Aligned_cols=47  Identities=30%  Similarity=0.625  Sum_probs=38.6

Q ss_pred             CCHHHHHhcccc--C-CCCCCCChHHHHHcCCcccCCCCceEEeeeCCccc
Q psy3967         173 ATYESRLRSFDS--W-PISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLK  220 (324)
Q Consensus       173 ~~~~~Rl~SF~~--W-p~~~~~~~~~LA~AGFyytg~~D~v~Cf~Cg~~l~  220 (324)
                      ..+-.||+||..  | +.+..+++-.+|+.||...+ .|+++|-.|+..+.
T Consensus         5 ~~~l~RL~Tf~~~~W~~kp~~lspl~cA~~GW~~~~-~d~l~C~~C~~~l~   54 (133)
T PF07967_consen    5 EDFLRRLETFKSLTWFPKPPWLSPLECARRGWICVS-KDMLKCESCGARLC   54 (133)
T ss_pred             HHHHHHHHHcccccccCCCcccCHHHHHHcCCCcCC-CCEEEeCCCCCEEE
Confidence            456889999985  8 33445789999999999987 68999999998664

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This zinc-finger like domain is distributed throughout the eukaryotic kingdom in NIPA (Nuclear interacting partner of ALK) and other proteins. NIPA is thought to perform an antiapoptotic role in nucleophosmin-anaplastic lymphoma kinase (ALK) mediated signalling events []. The domain is often repeated, with the second domain usually containing a large insert (approximately 90 residues) after the first three cysteine residues. The Schizosaccharomyces pombe protein containing this domain (O94506 from SWISSPROT) is involved in mRNA export from the nucleus []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005634 nucleus

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=94.76  E-value=0.02  Score=38.00  Aligned_cols=21  Identities=38%  Similarity=0.860  Sum_probs=17.9

Q ss_pred             ccccccccccE-EEecCCceee
Q psy3967         301 CKICYQREMGV-VFLPCGHIVA  321 (324)
Q Consensus       301 C~iC~~~~~~~-~~~PCgH~~~  321 (324)
                      |.||++..++. ++++|||+.+
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC   22 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFC   22 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEE
T ss_pred             CCCCCCcccCcCEECCCCCchh
Confidence            78999999999 7999999964

>smart00184 RING Ring finger

Probab=93.78  E-value=0.031  Score=35.34  Aligned_cols=20  Identities=45%  Similarity=1.021  Sum_probs=18.5

Q ss_pred             ccccccccccEEEecCCcee
Q psy3967         301 CKICYQREMGVVFLPCGHIV  320 (324)
Q Consensus       301 C~iC~~~~~~~~~~PCgH~~  320 (324)
                      |.||++...+++++||||..
T Consensus         1 C~iC~~~~~~~~~~~C~H~~   20 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTF   20 (39)
T ss_pred             CCcCccCCCCcEEecCCChH
Confidence            78999999999999999984

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=92.79  E-value=0.072  Score=36.56  Aligned_cols=20  Identities=40%  Similarity=0.981  Sum_probs=10.5

Q ss_pred             cccccccccc----EEEecCCceee
Q psy3967         301 CKICYQREMG----VVFLPCGHIVA  321 (324)
Q Consensus       301 C~iC~~~~~~----~~~~PCgH~~~  321 (324)
                      |-||++ -.+    -+.|||||+.+
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c   24 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFC   24 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEE
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHH
Confidence            678887 455    58899999986

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=90.79  E-value=0.16  Score=33.62  Aligned_cols=21  Identities=43%  Similarity=0.944  Sum_probs=18.8

Q ss_pred             ccccccccccEE-EecCCceee
Q psy3967         301 CKICYQREMGVV-FLPCGHIVA  321 (324)
Q Consensus       301 C~iC~~~~~~~~-~~PCgH~~~  321 (324)
                      |.||++.-.+.+ ++||||..+
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC   22 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFC   22 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEE
T ss_pred             CCcCCccccCCCEEecCCCcch
Confidence            789999999888 999999865

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG4692|consensus

Probab=88.77  E-value=0.14  Score=50.01  Aligned_cols=26  Identities=42%  Similarity=0.981  Sum_probs=23.5

Q ss_pred             CccccccccccccccEEEecCCceee
Q psy3967         296 SDGRLCKICYQREMGVVFLPCGHIVA  321 (324)
Q Consensus       296 ~~~~~C~iC~~~~~~~~~~PCgH~~~  321 (324)
                      .++.+|-||+..+++.||-||||-.|
T Consensus       420 sEd~lCpICyA~pi~Avf~PC~H~SC  445 (489)
T KOG4692|consen  420 SEDNLCPICYAGPINAVFAPCSHRSC  445 (489)
T ss_pred             cccccCcceecccchhhccCCCCchH
Confidence            35789999999999999999999876

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=88.40  E-value=0.37  Score=32.68  Aligned_cols=21  Identities=43%  Similarity=0.844  Sum_probs=17.6

Q ss_pred             ccccccccccEEEecCCceee
Q psy3967         301 CKICYQREMGVVFLPCGHIVA  321 (324)
Q Consensus       301 C~iC~~~~~~~~~~PCgH~~~  321 (324)
                      |-||++--.+=|.|+|||..+
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC   21 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFC   21 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEE
T ss_pred             CCccchhhCCccccCCcCHHH
Confidence            789999999999999999876

>KOG1785|consensus

Probab=86.09  E-value=0.18  Score=50.03  Aligned_cols=24  Identities=42%  Similarity=0.934  Sum_probs=21.9

Q ss_pred             cccccccccccccEEEecCCceee
Q psy3967         298 GRLCKICYQREMGVVFLPCGHIVA  321 (324)
Q Consensus       298 ~~~C~iC~~~~~~~~~~PCgH~~~  321 (324)
                      -.+||||-+++.||-+-||||+.|
T Consensus       369 FeLCKICaendKdvkIEPCGHLlC  392 (563)
T KOG1785|consen  369 FELCKICAENDKDVKIEPCGHLLC  392 (563)
T ss_pred             HHHHHHhhccCCCcccccccchHH
Confidence            357999999999999999999876

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=84.66  E-value=0.61  Score=31.43  Aligned_cols=22  Identities=45%  Similarity=0.913  Sum_probs=18.0

Q ss_pred             ccccccccc---ccEEEecCCceee
Q psy3967         300 LCKICYQRE---MGVVFLPCGHIVA  321 (324)
Q Consensus       300 ~C~iC~~~~---~~~~~~PCgH~~~  321 (324)
                      .|.||++.-   ..++.+||||+..
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh   26 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFH   26 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEE
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeC
Confidence            599999754   6899999999753

...

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=84.15  E-value=0.53  Score=34.03  Aligned_cols=25  Identities=28%  Similarity=0.638  Sum_probs=21.8

Q ss_pred             ccccccccccccccEEEecCCceee
Q psy3967         297 DGRLCKICYQREMGVVFLPCGHIVA  321 (324)
Q Consensus       297 ~~~~C~iC~~~~~~~~~~PCgH~~~  321 (324)
                      ....|..|......=+++||||+++
T Consensus         6 ~~~~~~~~~~~~~~~~~~pCgH~I~   30 (55)
T PF14447_consen    6 PEQPCVFCGFVGTKGTVLPCGHLIC   30 (55)
T ss_pred             cceeEEEccccccccccccccceee
Confidence            3567999999988899999999986

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=81.93  E-value=0.59  Score=31.73  Aligned_cols=22  Identities=32%  Similarity=0.848  Sum_probs=17.3

Q ss_pred             ccccccccc---ccEEEecCCceee
Q psy3967         300 LCKICYQRE---MGVVFLPCGHIVA  321 (324)
Q Consensus       300 ~C~iC~~~~---~~~~~~PCgH~~~  321 (324)
                      .|.||++.-   +..++++|||+.+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C   25 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFC   25 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHH
Confidence            377888655   6799999999864

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=81.18  E-value=0.76  Score=29.79  Aligned_cols=21  Identities=43%  Similarity=0.980  Sum_probs=15.4

Q ss_pred             cccccccccccEE-EecCCcee
Q psy3967         300 LCKICYQREMGVV-FLPCGHIV  320 (324)
Q Consensus       300 ~C~iC~~~~~~~~-~~PCgH~~  320 (324)
                      .|.||++.-.+.+ +.||||..
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~   22 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVF   22 (45)
T ss_pred             CCCcCchhhhCceEecCCCChh
Confidence            4899998874444 44599975

>KOG0823|consensus

Probab=80.17  E-value=0.82  Score=42.31  Aligned_cols=24  Identities=29%  Similarity=0.534  Sum_probs=22.0

Q ss_pred             cccccccccccccEEEecCCceee
Q psy3967         298 GRLCKICYQREMGVVFLPCGHIVA  321 (324)
Q Consensus       298 ~~~C~iC~~~~~~~~~~PCgH~~~  321 (324)
                      .-.|-||+|...|-|+-+|||+-|
T Consensus        47 ~FdCNICLd~akdPVvTlCGHLFC   70 (230)
T KOG0823|consen   47 FFDCNICLDLAKDPVVTLCGHLFC   70 (230)
T ss_pred             ceeeeeeccccCCCEEeeccccee
Confidence            456999999999999999999977

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	324
1jd6_A	124	Crystal Structure Of Diap1-bir2/hid Complex Length		1e-25
1tw6_A	133	Structure Of An Ml-IapXIAP CHIMERA BOUND TO A 9MER		2e-22
2i3h_A	133	Structure Of An Ml-iap/xiap Chimera Bound To A 4-me		2e-22
3uw5_A	116	Crystal Structure Of The Bir Domain Of Mliap Bound		3e-22
3t6p_A	345	Iap Antagonist-Induced Conformational Change In Cia		7e-22
3t6p_A	345	Iap Antagonist-Induced Conformational Change In Cia		6e-04
3f7g_A	140	Structure Of The Bir Domain From Ml-Iap Bound To A		1e-21
1oxn_A	140	Structure And Function Analysis Of Peptide Antagoni		2e-21
4hy4_A	115	Crystal Structure Of Ciap1 Bir3 Bound To T3170284 L		1e-20
3uw4_A	92	Crystal Structure Of Ciap1 Bir3 Bound To Gdc0152 Le		1e-20
3mup_A	122	Ciap1-Bir3 Domain In Complex With The Smac-Mimetic		1e-20
2uvl_A	96	Human Bir3 Domain Of Baculoviral Inhibitor Of Apopt		1e-20
3d9t_A	97	Ciap1-Bir3 In Complex With N-Terminal Peptide From		1e-20
1qbh_A	101	Solution Structure Of A Baculoviral Inhibitor Of Ap		1e-20
2vm5_A	106	Human Bir2 Domain Of Baculoviral Inhibitor Of Apopt		4e-19
3clx_D	130	Crystal Structure Of Xiap Bir3 Domain In Complex Wi		8e-18
4hy0_A	125	Crystal Structure Of Xiap Bir3 With T3256336 Length		1e-17
1f9x_A	120	Average Nmr Solution Structure Of The Bir-3 Domain		1e-17
1g73_C	121	Crystal Structure Of Smac Bound To Xiap-Bir3 Domain		1e-17
1g3f_A	117	Nmr Structure Of A 9 Residue Peptide From SmacDIABL		1e-17
3eyl_A	122	Crystal Structure Of Xiap Bir3 Domain In Complex Wi		1e-17
2jk7_A	116	Xiap Bir3 Bound To A Smac Mimetic Length = 116		1e-17
2opy_A	106	Smac Mimic Bound To Bir3-Xiap Length = 106		2e-17
2opz_A	109	Avpf Bound To Bir3-Xiap Length = 109		2e-17
1nw9_A	98	Structure Of Caspase-9 In An Inhibitory Complex Wit		2e-17
3hl5_A	95	Crystal Structure Of Xiap Bir3 With Cs3 Length = 95		2e-17
2vsl_A	96	Crystal Structure Of Xiap Bir3 With A Bivalent Smac		2e-17
1xb0_A	108	Structure Of The Bir Domain Of Iap-Like Protein 2 L		5e-17
3siq_A	136	Crystal Structure Of Autoinhibited Diap1-Bir1 Domai		9e-16
3siq_A	136	Crystal Structure Of Autoinhibited Diap1-Bir1 Domai		2e-09
3sip_E	115	Crystal Structure Of Drice And Diap1-Bir1 Complex L		2e-15
3sip_E	115	Crystal Structure Of Drice And Diap1-Bir1 Complex L		3e-09
1sdz_A	116	Crystal Structure Of Diap1 Bir1 Bound To A Reaper P		2e-15
1sdz_A	116	Crystal Structure Of Diap1 Bir1 Bound To A Reaper P		3e-09
1c9q_A	117	Average Nmr Solution Structure Of The Bir-2 Domain		5e-15
1i3o_E	121	Crystal Structure Of The Complex Of Xiap-Bir2 And C		5e-15
1i4o_C	141	Crystal Structure Of The XiapCASPASE-7 Complex Leng		1e-14
1kmc_C	119	Crystal Structure Of The Caspase-7 XIAP-Bir2 Comple		2e-14
1i51_E	117	Crystal Structure Of Caspase-7 Complexed With Xiap		2e-14
3m0a_D	75	Crystal Structure Of Traf2:ciap2 Complex Length = 7		1e-07
3m1d_A	85	Structure Of Bir1 From Ciap1 Length = 85		1e-07
2qra_D	111	Crystal Structure Of Xiap Bir1 Domain (p21 Form) Le		1e-06
2qra_D	111	Crystal Structure Of Xiap Bir1 Domain (p21 Form) Le		8e-06
2poi_A	94	Crystal Structure Of Xiap Bir1 Domain (I222 Form) L		3e-06
2poi_A	94	Crystal Structure Of Xiap Bir1 Domain (I222 Form) L		9e-06
2pop_B	95	The Crystal Structure Of Tab1 And Bir1 Complex Leng		3e-06
2pop_B	95	The Crystal Structure Of Tab1 And Bir1 Complex Leng		9e-06
3uij_A	143	Crystal Structure Of Human Survivin K62yH80W MUTANT		4e-06
3uij_A	143	Crystal Structure Of Human Survivin K62yH80W MUTANT		5e-06
2raw_A	145	Crystal Structure Of The Borealin-survivin Complex		2e-05
2rax_A	123	Crystal Structure Of Borealin (20-78) Bound To Surv		3e-05
3uee_A	146	Crystal Structure Of Human Survivin K62a Mutant Bou		4e-05
1f3h_A	142	X-Ray Crystal Structure Of The Human Anti-Apoptotic		4e-05
3uei_A	146	Crystal Structure Of Human Survivin E65a Mutant Len		5e-05
3uei_A	146	Crystal Structure Of Human Survivin E65a Mutant Len		9e-05
1m4m_A	140	Mouse Survivin Length = 140		5e-05
3uec_A	146	Crystal Structure Of Human Survivin Bound To Histon		6e-05
1e31_A	142	Survivin Dimer H. Sapiens Length = 142		6e-05
3ueh_A	146	Crystal Structure Of Human Survivin H80a Mutant Len		6e-05
3uig_A	143	Crystal Structure Of Human Survivin In Complex With		7e-05
1xox_A	117	Solution Structure Of Human Survivin Length = 117		9e-05
2ecg_A	75	Solution Structure Of The Ring Domain Of The Baculo		6e-04
4ic3_A	74	Crystal Structure Of The F495l Mutant Xiap Ring Dom		6e-04
4ic2_A	74	Crystal Structure Of The Xiap Ring Domain Length =		6e-04

>pdb|1JD6|A Chain A, Crystal Structure Of Diap1-bir2/hid Complex Length = 124

Iteration: 1
 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 66/100 (66%)
Query: 164 NSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWE 223
           N  P +P YA   +RLR+F++WP +L+ KP  L EAGFFYTG  D+  CF CGGGL  W 
Sbjct: 15  NYFPQYPEYAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWN 74
Query: 224 ETDDPWTEHARWFSSCPYVKLVKGQEFINQVIGHKEVAND 263
           + D+PW +HA W S C +VKL+KGQ +I+ V     +A +
Sbjct: 75  DNDEPWEQHALWLSQCRFVKLMKGQLYIDTVAAKPVLAEE 114

>pdb|1TW6|A Chain A, Structure Of An Ml-IapXIAP CHIMERA BOUND TO A 9MER PEPTIDE DERIVED From Smac Length = 133

Iteration: 1
 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 57/88 (64%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
           PAFP   + E RL SF  WP++  + P  L  AGFF+TG  D+  CF C GGL+ W+  D
Sbjct: 40  PAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGD 99
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
           DPWTEHA+WF  C ++   KGQE+IN +
Sbjct: 100 DPWTEHAKWFPGCQFLLRSKGQEYINNI 127

>pdb|2I3H|A Chain A, Structure Of An Ml-iap/xiap Chimera Bound To A 4-mer Peptide (avpw) Length = 133

Iteration: 1
 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 57/88 (64%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
           PAFP   + E RL SF  WP++  + P  L  AGFF+TG  D+  CF C GGL+ W+  D
Sbjct: 40  PAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGD 99
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
           DPWTEHA+WF  C ++   KGQE+IN +
Sbjct: 100 DPWTEHAKWFPGCQFLLRSKGQEYINNI 127

>pdb|3UW5|A Chain A, Crystal Structure Of The Bir Domain Of Mliap Bound To Gdc0152 Length = 116

Iteration: 1
 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 44/88 (50%), Positives = 57/88 (64%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
           PAFP   + E RL SF  WP++  + P  L  AGFF+TG  D+  CF C GGL+ W+  D
Sbjct: 23  PAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGD 82
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
           DPWTEHA+WF  C ++   KGQE+IN +
Sbjct: 83  DPWTEHAKWFPGCQFLLRSKGQEYINNI 110

>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1 Promotes E3 Ligase Activation Via Dimerization Length = 345

Iteration: 1
 Score =  100 bits (250), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 57/84 (67%)
Query: 174 TYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHA 233
           T+ +R+R+F  WP S+ ++P  L  AGF+Y G+ D   CF C GGL+ WE  DDPW EHA
Sbjct: 5   THAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWVEHA 64
Query: 234 RWFSSCPYVKLVKGQEFINQVIGH 257
           +WF  C ++  +KGQEF++++ G 
Sbjct: 65  KWFPRCEFLIRMKGQEFVDEIQGR 88

>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1 Promotes E3 Ligase Activation Via Dimerization Length = 345

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 299 RLCKICYQREMGVVFLPCGHIVAC 322
           R CK+C  +E+ VVF+PCGH+V C
Sbjct: 296 RTCKVCMDKEVSVVFIPCGHLVVC 319

>pdb|3F7G|A Chain A, Structure Of The Bir Domain From Ml-Iap Bound To A Peptidomimetic Length = 140

Iteration: 1
 Score =  100 bits (248), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 43/88 (48%), Positives = 58/88 (65%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
           PAFP   + E RL SF  WP++  + P  L  AGFF+TG  D+  CF C GGL+ W+  D
Sbjct: 40  PAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGD 99
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
           DPWTEHA+WF SC ++   KG++F++ V
Sbjct: 100 DPWTEHAKWFPSCQFLLRSKGRDFVHSV 127

>pdb|1OXN|A Chain A, Structure And Function Analysis Of Peptide Antagonists Of Melanoma Inhibitor Of Apoptosis (Ml-Iap) Length = 140

Iteration: 1
 Score =  100 bits (248), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 43/88 (48%), Positives = 58/88 (65%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
           PAFP   + E RL SF  WP++  + P  L  AGFF+TG  D+  CF C GGL+ W+  D
Sbjct: 40  PAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGD 99
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
           DPWTEHA+WF SC ++   KG++F++ V
Sbjct: 100 DPWTEHAKWFPSCQFLLRSKGRDFVHSV 127

>pdb|4HY4|A Chain A, Crystal Structure Of Ciap1 Bir3 Bound To T3170284 Length = 115

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 62/100 (62%)
Query: 157 EKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCG 216
           E L     S  +  +  T+ +R+R+F  WP S+ ++P  L  AGF+Y G+ D   CF C 
Sbjct: 14  ENLYFQGGSSISNLSMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCD 73
Query: 217 GGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQVIG 256
           GGL+ WE  DDPW EHA+WF  C ++  +KGQEF++++ G
Sbjct: 74  GGLRCWESGDDPWVEHAKWFPRCEFLIRMKGQEFVDEIQG 113

>pdb|3UW4|A Chain A, Crystal Structure Of Ciap1 Bir3 Bound To Gdc0152 Length = 92

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 55/81 (67%)
Query: 174 TYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHA 233
           T+ +R+R+F  WP S+ ++P  L  AGF+Y G+ D   CF C GGL+ WE  DDPW EHA
Sbjct: 6   THAARMRTFMYWPSSVPVQPEQLAAAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWVEHA 65
Query: 234 RWFSSCPYVKLVKGQEFINQV 254
           +WF  C ++  +KGQE+IN +
Sbjct: 66  KWFPGCEFLIRMKGQEYINNI 86

>pdb|3MUP|A Chain A, Ciap1-Bir3 Domain In Complex With The Smac-Mimetic Compound Smac037 Length = 122

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 57/83 (68%)
Query: 174 TYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHA 233
           T+ +R+R+F  WP S+ ++P  L  AGF+Y G+ D   CF C GGL+ WE  DDPW EHA
Sbjct: 19  THAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHA 78
Query: 234 RWFSSCPYVKLVKGQEFINQVIG 256
           +WF  C ++  +KGQEF++++ G
Sbjct: 79  KWFPRCEFLIRMKGQEFVDEIQG 101

>pdb|2UVL|A Chain A, Human Bir3 Domain Of Baculoviral Inhibitor Of Apoptosis Repeat-Containing 3 (Birc3) Length = 96

Iteration: 1
 Score = 97.4 bits (241), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 54/81 (66%)
Query: 174 TYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHA 233
           T+ +R ++F +WP S+ + P  L  AGF+Y G +D   CF C GGL+ WE  DDPW +HA
Sbjct: 13  THAARFKTFFNWPSSVLVNPEQLASAGFYYVGNSDDVKCFCCDGGLRCWESGDDPWVQHA 72
Query: 234 RWFSSCPYVKLVKGQEFINQV 254
           +WF  C Y+  +KGQEFI QV
Sbjct: 73  KWFPRCEYLIRIKGQEFIRQV 93

>pdb|3D9T|A Chain A, Ciap1-Bir3 In Complex With N-Terminal Peptide From Caspase- 9 (Atpfqe) Length = 97

Iteration: 1
 Score = 97.1 bits (240), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 57/83 (68%)
Query: 174 TYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHA 233
           T+ +R+R+F  WP S+ ++P  L  AGF+Y G+ D   CF C GGL+ WE  DDPW EHA
Sbjct: 13  THAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHA 72
Query: 234 RWFSSCPYVKLVKGQEFINQVIG 256
           +WF  C ++  +KGQEF++++ G
Sbjct: 73  KWFPRCEFLIRMKGQEFVDEIQG 95

>pdb|1QBH|A Chain A, Solution Structure Of A Baculoviral Inhibitor Of Apoptosis (Iap) Repeat Length = 101

Iteration: 1
 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 57/83 (68%)
Query: 174 TYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHA 233
           T+ +R+R+F  WP S+ ++P  L  AGF+Y G+ D   CF C GGL+ WE  DDPW EHA
Sbjct: 6   THAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHA 65
Query: 234 RWFSSCPYVKLVKGQEFINQVIG 256
           +WF  C ++  +KGQEF++++ G
Sbjct: 66  KWFPRCEFLIRMKGQEFVDEIQG 88

>pdb|2VM5|A Chain A, Human Bir2 Domain Of Baculoviral Inhibitor Of Apoptosis Repeat-Containing 1 (Birc1) Length = 106

Iteration: 1
 Score = 92.0 bits (227), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 54/85 (63%), Gaps = 1/85 (1%)
Query: 172 YATYESRLRSFDSWPISLR-LKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWT 230
           Y   E+RL SF +WP  ++ + P  L+EAGF +TGK D   CF CGG L +WEE DDPW 
Sbjct: 18  YQEEEARLASFRNWPFYVQGISPCVLSEAGFVFTGKQDTVQCFSCGGCLGNWEEGDDPWK 77
Query: 231 EHARWFSSCPYVKLVKGQEFINQVI 255
           EHA+WF  C +++  K  E I Q I
Sbjct: 78  EHAKWFPKCEFLRSKKSSEEITQYI 102

>pdb|3CLX|D Chain D, Crystal Structure Of Xiap Bir3 Domain In Complex With A Smac-Mimetic Compound, Smac005 Length = 130

Iteration: 1
 Score = 87.8 bits (216), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
           P  P+ A YE+R+ +F +W  S+  +   L  AGF+  G+ D+  CF CGGGL  W+ ++
Sbjct: 31  PRNPSMADYEARIFTFGTWIYSVNKE--QLARAGFYALGEGDKVKCFHCGGGLTDWKPSE 88
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
           DPW +HA+W+  C Y+   KGQE+IN +
Sbjct: 89  DPWEQHAKWYPGCKYLLEQKGQEYINNI 116

>pdb|4HY0|A Chain A, Crystal Structure Of Xiap Bir3 With T3256336 Length = 125

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
           P  P+ A YE+R+ +F +W  S+  +   L  AGF+  G+ D+  CF CGGGL  W+ ++
Sbjct: 25  PRNPSMADYEARIFTFGTWIYSVNKE--QLARAGFYALGEGDKVKCFHCGGGLTDWKPSE 82
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
           DPW +HA+W+  C Y+   KGQE+IN +
Sbjct: 83  DPWEQHAKWYPGCKYLLEQKGQEYINNI 110

>pdb|1F9X|A Chain A, Average Nmr Solution Structure Of The Bir-3 Domain Of Xiap Length = 120

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
           P  P+ A YE+R+ +F +W  S+  +   L  AGF+  G+ D+  CF CGGGL  W+ ++
Sbjct: 21  PRNPSMADYEARIFTFGTWIYSVNKE--QLARAGFYALGEGDKVKCFHCGGGLTDWKPSE 78
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
           DPW +HA+W+  C Y+   KGQE+IN +
Sbjct: 79  DPWEQHAKWYPGCKYLLEQKGQEYINNI 106

>pdb|1G73|C Chain C, Crystal Structure Of Smac Bound To Xiap-Bir3 Domain Length = 121

Iteration: 1
 Score = 87.4 bits (215), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
           P  P+ A YE+R+ +F +W  S+  +   L  AGF+  G+ D+  CF CGGGL  W+ ++
Sbjct: 20  PRNPSMADYEARIFTFGTWIYSVNKE--QLARAGFYALGEGDKVKCFHCGGGLTDWKPSE 77
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
           DPW +HA+W+  C Y+   KGQE+IN +
Sbjct: 78  DPWEQHAKWYPGCKYLLEQKGQEYINNI 105

>pdb|1G3F|A Chain A, Nmr Structure Of A 9 Residue Peptide From SmacDIABLO Complexed To The Bir3 Domain Of Xiap Length = 117

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
           P  P+ A YE+R+ +F +W  S+  +   L  AGF+  G+ D+  CF CGGGL  W+ ++
Sbjct: 18  PRNPSMADYEARIFTFGTWIYSVNKE--QLARAGFYALGEGDKVKCFHCGGGLTDWKPSE 75
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
           DPW +HA+W+  C Y+   KGQE+IN +
Sbjct: 76  DPWEQHAKWYPGCKYLLEQKGQEYINNI 103

>pdb|3EYL|A Chain A, Crystal Structure Of Xiap Bir3 Domain In Complex With A Smac-Mimetic Compound Length = 122

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
           P  P+ A YE+R+ +F +W  S+  +   L  AGF+  G+ D+  CF CGGGL  W+ ++
Sbjct: 17  PRNPSMADYEARIFTFGTWIYSVNKE--QLARAGFYALGEGDKVKCFHCGGGLTDWKPSE 74
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
           DPW +HA+W+  C Y+   KGQE+IN +
Sbjct: 75  DPWEQHAKWYPGCKYLLEQKGQEYINNI 102

>pdb|2JK7|A Chain A, Xiap Bir3 Bound To A Smac Mimetic Length = 116

Iteration: 1
 Score = 87.0 bits (214), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
           P  P+ A YE+R+ +F +W  S+  +   L  AGF+  G+ D+  CF CGGGL  W+ ++
Sbjct: 17  PRNPSMADYEARIFTFGTWIYSVNKE--QLARAGFYALGEGDKVKCFHCGGGLTDWKPSE 74
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
           DPW +HA+W+  C Y+   KGQE+IN +
Sbjct: 75  DPWEQHAKWYPGCKYLLEQKGQEYINNI 102

>pdb|2OPY|A Chain A, Smac Mimic Bound To Bir3-Xiap Length = 106

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
           P  P+ A YE+R+ +F +W  S+  +   L  AGF+  G+ D+  CF CGGGL  W+ ++
Sbjct: 9   PRNPSMADYEARIFTFGTWIYSVNKE--QLARAGFYALGEGDKVKCFHCGGGLTDWKPSE 66
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
           DPW +HA+W+  C Y+   KGQE+IN +
Sbjct: 67  DPWEQHAKWYPGCKYLLEQKGQEYINNI 94

>pdb|2OPZ|A Chain A, Avpf Bound To Bir3-Xiap Length = 109

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
           P  P+ A YE+R+ +F +W  S+  +   L  AGF+  G+ D+  CF CGGGL  W+ ++
Sbjct: 9   PRNPSMADYEARIFTFGTWIYSVNKE--QLARAGFYALGEGDKVKCFHCGGGLTDWKPSE 66
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
           DPW +HA+W+  C Y+   KGQE+IN +
Sbjct: 67  DPWEQHAKWYPGCKYLLEQKGQEYINNI 94

>pdb|1NW9|A Chain A, Structure Of Caspase-9 In An Inhibitory Complex With Xiap- Bir3 Length = 98

Iteration: 1
 Score = 86.7 bits (213), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
           P  P+ A YE+R+ +F +W  S+  +   L  AGF+  G+ D+  CF CGGGL  W+ ++
Sbjct: 5   PRNPSMADYEARIFTFGTWIYSVNKE--QLARAGFYALGEGDKVKCFHCGGGLTDWKPSE 62
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
           DPW +HA+W+  C Y+   KGQE+IN +
Sbjct: 63  DPWEQHAKWYPGCKYLLEQKGQEYINNI 90

>pdb|3HL5|A Chain A, Crystal Structure Of Xiap Bir3 With Cs3 Length = 95

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
           P  P+ A YE+R+ +F +W  S+  +   L  AGF+  G+ D+  CF CGGGL  W+ ++
Sbjct: 6   PRNPSMADYEARIFTFGTWIYSVNKE--QLARAGFYALGEGDKVKCFHCGGGLTDWKPSE 63
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
           DPW +HA+W+  C Y+   KGQE+IN +
Sbjct: 64  DPWEQHAKWYPGCKYLLEQKGQEYINNI 91

>pdb|2VSL|A Chain A, Crystal Structure Of Xiap Bir3 With A Bivalent Smac Mimetic Length = 96

Iteration: 1
 Score = 86.3 bits (212), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 56/88 (63%), Gaps = 2/88 (2%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
           P  P+ A YE+R+ +F +W  S+  +   L  AGF+  G+ D+  CF CGGGL  W+ ++
Sbjct: 8   PRNPSMADYEARIFTFGTWIYSVNKE--QLARAGFYALGEGDKVKCFHCGGGLTDWKPSE 65
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
           DPW +HA+W+  C Y+   KGQE+IN +
Sbjct: 66  DPWEQHAKWYPGCKYLLEQKGQEYINNI 93

>pdb|1XB0|A Chain A, Structure Of The Bir Domain Of Iap-Like Protein 2 Length = 108

Iteration: 1
 Score = 85.1 bits (209), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 54/88 (61%), Gaps = 2/88 (2%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
           P  P+   YE+RL +F +W  S+  +   L  AGF+  G+ D+  CF CGGGL +W+  +
Sbjct: 9   PRNPSMTGYEARLITFGTWMYSVNKE--QLARAGFYAIGQEDKVQCFHCGGGLANWKPKE 66
Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
           DPW +HA+W+  C Y+   KG E+IN +
Sbjct: 67  DPWEQHAKWYPGCKYLLEEKGHEYINNI 94

>pdb|3SIQ|A Chain A, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain Length = 136

Iteration: 1
 Score = 80.9 bits (198), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 42/106 (39%), Positives = 58/106 (54%), Gaps = 11/106 (10%)
Query: 19  DNRSTSTLLDKC----SRKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENG 74
           DN + +T L K     +R  ++  E  RL +F + WPL +L  +Q+A  G YF       
Sbjct: 13  DNNTNATQLFKNNINKTRMNDLNREETRLKTFTD-WPLDWLDKRQLAQTGMYFTHA---- 67
Query: 75  RFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRRLKKGNT 120
              D VKC FCG+E+G W Q D P+ +H++WSPNC  LRR    N 
Sbjct: 68  --GDKVKCFFCGVEIGSWEQEDQPVPEHQRWSPNCPLLRRRTTNNV 111

>pdb|3SIQ|A Chain A, Crystal Structure Of Autoinhibited Diap1-Bir1 Domain Length = 136

Iteration: 1
 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 176 ESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARW 235
           E+RL++F  WP+   L    L + G ++T   D+  CF CG  +  WE+ D P  EH RW
Sbjct: 38  ETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPEHQRW 96
Query: 236 FSSCPYVK 243
             +CP ++
Sbjct: 97  SPNCPLLR 104

>pdb|3SIP|E Chain E, Crystal Structure Of Drice And Diap1-Bir1 Complex Length = 115

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 56/111 (50%), Gaps = 18/111 (16%)
Query: 31  SRKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELG 90
           +R  ++  E  RL +F + WPL +L  +Q+A  G YF          D VKC FCG+E+G
Sbjct: 6   TRMNDLNREETRLKTFTD-WPLDWLDKRQLAQTGMYFTHA------GDKVKCFFCGVEIG 58
Query: 91  KWVQGDDPLKDHEKWSPNCWFLRRLKKGNT-----------ESAGYDTCGS 130
            W Q D P+ +H++WSPNC  LRR    N                YD CG+
Sbjct: 59  SWEQEDQPVPEHQRWSPNCPLLRRRTTNNVPINAEALDRILPPISYDICGA 109

>pdb|3SIP|E Chain E, Crystal Structure Of Drice And Diap1-Bir1 Complex Length = 115

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 176 ESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARW 235
           E+RL++F  WP+   L    L + G ++T   D+  CF CG  +  WE+ D P  EH RW
Sbjct: 15  ETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPEHQRW 73
Query: 236 FSSCPYVK 243
             +CP ++
Sbjct: 74  SPNCPLLR 81

>pdb|1SDZ|A Chain A, Crystal Structure Of Diap1 Bir1 Bound To A Reaper Peptide Length = 116

Iteration: 1
 Score = 79.7 bits (195), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 41/111 (36%), Positives = 56/111 (50%), Gaps = 18/111 (16%)
Query: 31  SRKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELG 90
           +R  ++  E  RL +F + WPL +L  +Q+A  G YF          D VKC FCG+E+G
Sbjct: 7   TRMNDLNREETRLKTFTD-WPLDWLDKRQLAQTGMYFTHA------GDKVKCFFCGVEIG 59
Query: 91  KWVQGDDPLKDHEKWSPNCWFLRRLKKGNT-----------ESAGYDTCGS 130
            W Q D P+ +H++WSPNC  LRR    N                YD CG+
Sbjct: 60  SWEQEDQPVPEHQRWSPNCPLLRRRTTNNVPINAEALDRILPPISYDICGA 110

>pdb|1SDZ|A Chain A, Crystal Structure Of Diap1 Bir1 Bound To A Reaper Peptide Length = 116

Iteration: 1
 Score = 59.3 bits (142), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 176 ESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARW 235
           E+RL++F  WP+   L    L + G ++T   D+  CF CG  +  WE+ D P  EH RW
Sbjct: 16  ETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPEHQRW 74
Query: 236 FSSCPYVK 243
             +CP ++
Sbjct: 75  SPNCPLLR 82

>pdb|1C9Q|A Chain A, Average Nmr Solution Structure Of The Bir-2 Domain Of Xiap Length = 117

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 54/98 (55%)
Query: 145 SCSQPNQVVSSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYT 204
           S +  + ++ + + + I     P  P   + E+RL+SF +WP    L P  L  AG +YT
Sbjct: 10  SETHADYLLRTGQVVDISDTIYPRNPAMYSEEARLKSFQNWPDYAHLTPRELASAGLYYT 69
Query: 205 GKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYV 242
           G  DQ  CF CGG LK+WE  D  W+EH R F +C +V
Sbjct: 70  GIGDQVQCFACGGKLKNWEPGDRAWSEHRRHFPNCFFV 107

>pdb|1I3O|E Chain E, Crystal Structure Of The Complex Of Xiap-Bir2 And Caspase 3 Length = 121

Iteration: 1
 Score = 78.6 bits (192), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 54/98 (55%)
Query: 145 SCSQPNQVVSSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYT 204
           S +  + ++ + + + I     P  P   + E+RL+SF +WP    L P  L  AG +YT
Sbjct: 14  SETHADYLLRTGQVVDISDTIYPRNPAMYSEEARLKSFQNWPDYAHLTPRELASAGLYYT 73
Query: 205 GKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYV 242
           G  DQ  CF CGG LK+WE  D  W+EH R F +C +V
Sbjct: 74  GIGDQVQCFACGGKLKNWEPGDRAWSEHRRHFPNCFFV 111

>pdb|1I4O|C Chain C, Crystal Structure Of The XiapCASPASE-7 Complex Length = 141

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/76 (47%), Positives = 45/76 (59%)
Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
           P  P   + E+RL+SF +WP    L P  L  AG +YTG  DQ  CF CGG LK+WE  D
Sbjct: 36  PRNPAMYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFCCGGKLKNWEPCD 95
Query: 227 DPWTEHARWFSSCPYV 242
             W+EH R F +C +V
Sbjct: 96  RAWSEHRRHFPNCFFV 111

>pdb|1KMC|C Chain C, Crystal Structure Of The Caspase-7 XIAP-Bir2 Complex Length = 119

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 52/96 (54%)
Query: 147 SQPNQVVSSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGK 206
           +  + ++ + + + I     P  P     E+RL+SF +WP    L P  L  AG +YTG 
Sbjct: 12  THADYLLRTGQVVDISDTIYPRNPAMYCEEARLKSFQNWPDYAHLTPRELASAGLYYTGI 71
Query: 207 ADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYV 242
            DQ  CF CGG LK+WE  D  W+EH R F +C +V
Sbjct: 72  GDQVQCFCCGGKLKNWEPCDRAWSEHRRHFPNCFFV 107

>pdb|1I51|E Chain E, Crystal Structure Of Caspase-7 Complexed With Xiap Length = 117

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/96 (38%), Positives = 52/96 (54%)
Query: 147 SQPNQVVSSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGK 206
           +  + ++ + + + I     P  P     E+RL+SF +WP    L P  L  AG +YTG 
Sbjct: 12  THADYLLRTGQVVDISDTIYPRNPAMYCEEARLKSFQNWPDYAHLTPRELASAGLYYTGI 71
Query: 207 ADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYV 242
            DQ  CF CGG LK+WE  D  W+EH R F +C +V
Sbjct: 72  GDQVQCFCCGGKLKNWEPCDRAWSEHRRHFPNCFFV 107

>pdb|3M0A|D Chain D, Crystal Structure Of Traf2:ciap2 Complex Length = 75

Iteration: 1
 Score = 54.3 bits (129), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 39/66 (59%)
Query: 178 RLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFS 237
           R+ ++ ++P  + +   +L  AGF+YTG  D+  CF CG  L +W+  D P  +H + + 
Sbjct: 8   RMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKRGDSPTEKHKKLYP 67
Query: 238 SCPYVK 243
           SC +V+
Sbjct: 68  SCRFVQ 73

>pdb|3M1D|A Chain A, Structure Of Bir1 From Ciap1 Length = 85

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 39/66 (59%)
Query: 178 RLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFS 237
           R+ ++ ++P  + +   +L  AGF+YTG  D+  CF CG  L +W+  D P  +H + + 
Sbjct: 15  RMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKLGDSPIQKHKQLYP 74
Query: 238 SCPYVK 243
           SC +++
Sbjct: 75  SCSFIQ 80

>pdb|2QRA|D Chain D, Crystal Structure Of Xiap Bir1 Domain (p21 Form) Length = 111

Iteration: 1
 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 31  SRKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELG 90
           ++++    E +RL +F N    + +SA  +A AGF + G+       D V+C  C   + 
Sbjct: 30  NKEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGE------GDTVRCFSCHAAVD 83
Query: 91  KWVQGDDPLKDHEKWSPNCWFL 112
           +W  GD  +  H K SPNC F+
Sbjct: 84  RWQYGDSAVGRHRKVSPNCRFI 105

>pdb|2QRA|D Chain D, Crystal Structure Of Xiap Bir1 Domain (p21 Form) Length = 111

Iteration: 1
 Score = 47.8 bits (112), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 177 SRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWF 236
           +RL++F ++P    +   TL  AGF YTG+ D   CF C   +  W+  D     H +  
Sbjct: 40  NRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRKVS 99
Query: 237 SSCPYV 242
            +C ++
Sbjct: 100 PNCRFI 105

>pdb|2POI|A Chain A, Crystal Structure Of Xiap Bir1 Domain (I222 Form) Length = 94

Iteration: 1
 Score = 49.3 bits (116), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 31  SRKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELG 90
           ++++    E +RL +F N    + +SA  +A AGF + G+       D V+C  C   + 
Sbjct: 13  NKEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGE------GDTVRCFSCHAAVD 66
Query: 91  KWVQGDDPLKDHEKWSPNCWFL 112
           +W  GD  +  H K SPNC F+
Sbjct: 67  RWQYGDSAVGRHRKVSPNCRFI 88

>pdb|2POI|A Chain A, Crystal Structure Of Xiap Bir1 Domain (I222 Form) Length = 94

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 177 SRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWF 236
           +RL++F ++P    +   TL  AGF YTG+ D   CF C   +  W+  D     H +  
Sbjct: 23  NRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRKVS 82
Query: 237 SSCPYV 242
            +C ++
Sbjct: 83  PNCRFI 88

>pdb|2POP|B Chain B, The Crystal Structure Of Tab1 And Bir1 Complex Length = 95

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 6/82 (7%)
Query: 31  SRKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELG 90
           ++++    E +RL +F N    + +SA  +A AGF + G+       D V+C  C   + 
Sbjct: 13  NKEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGE------GDTVRCFSCHAAVD 66
Query: 91  KWVQGDDPLKDHEKWSPNCWFL 112
           +W  GD  +  H K SPNC F+
Sbjct: 67  RWQYGDSAVGRHRKVSPNCRFI 88

>pdb|2POP|B Chain B, The Crystal Structure Of Tab1 And Bir1 Complex Length = 95

Iteration: 1
 Score = 47.8 bits (112), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 33/66 (50%)
Query: 177 SRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWF 236
           +RL++F ++P    +   TL  AGF YTG+ D   CF C   +  W+  D     H +  
Sbjct: 23  NRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRKVS 82
Query: 237 SSCPYV 242
            +C ++
Sbjct: 83  PNCRFI 88

>pdb|3UIJ|A Chain A, Crystal Structure Of Human Survivin K62yH80W MUTANT IN COMPLEX WITH SmacDIABLO(1-15) Peptide Length = 143

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 42  RLDSFKNSWPLTYLSA---KQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDP 98
           R+ +FKN WP     A   ++MA AGF     +      D  +C FC  EL  W   DDP
Sbjct: 19  RISTFKN-WPFLEGCACTPERMAEAGFIHCPTENE---PDLAQCFFCFYELEGWEPDDDP 74
Query: 99  LKDHEKWSPNCWFL 112
           +++H+KWS  C FL
Sbjct: 75  IEEHKKWSSGCAFL 88

>pdb|3UIJ|A Chain A, Crystal Structure Of Human Survivin K62yH80W MUTANT IN COMPLEX WITH SmacDIABLO(1-15) Peptide Length = 143

Iteration: 1
 Score = 48.5 bits (114), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 42/86 (48%), Gaps = 6/86 (6%)
Query: 166 PPAFPNYATYESRLRSFDSWPI--SLRLKPVTLTEAGFFY---TGKADQTLCFRCGGGLK 220
           PPA+  +   + R+ +F +WP        P  + EAGF +     + D   CF C   L+
Sbjct: 8   PPAWQPFLK-DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFYELE 66
Query: 221 HWEETDDPWTEHARWFSSCPYVKLVK 246
            WE  DDP  EH +W S C ++ + K
Sbjct: 67  GWEPDDDPIEEHKKWSSGCAFLSVKK 92

>pdb|2RAW|A Chain A, Crystal Structure Of The Borealin-survivin Complex Length = 145

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 160 GIHKNSPPAFPNYATY--ESRLRSFDSWPI--SLRLKPVTLTEAGFFY---TGKADQTLC 212
           G H  +P   P +  +  + R+ +F +WP        P  + EAGF +     + D   C
Sbjct: 1   GSHMGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQC 60
Query: 213 FRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVK 246
           F C   L+ WE  DDP  EH +  S C ++ + K
Sbjct: 61  FFCFKELEGWEPDDDPIEEHKKHSSGCAFLSVKK 94

>pdb|2RAX|A Chain A, Crystal Structure Of Borealin (20-78) Bound To Survivin (1-120) Length = 123

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 7/94 (7%)
Query: 160 GIHKNSPPAFPNYATY--ESRLRSFDSWPI--SLRLKPVTLTEAGFFY---TGKADQTLC 212
           G H  +P   P +  +  + R+ +F +WP        P  + EAGF +     + D   C
Sbjct: 1   GSHMGAPTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQC 60
Query: 213 FRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVK 246
           F C   L+ WE  DDP  EH +  S C ++ + K
Sbjct: 61  FFCFKELEGWEPDDDPIEEHKKHSSGCAFLSVKK 94

>pdb|3UEE|A Chain A, Crystal Structure Of Human Survivin K62a Mutant Bound To N-Terminal Histone H3 Length = 146

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 166 PPAFPNYATYESRLRSFDSWPI--SLRLKPVTLTEAGFFY---TGKADQTLCFRCGGGLK 220
           PPA+  +   + R+ +F +WP        P  + EAGF +     + D   CF C   L+
Sbjct: 11  PPAWQPFLK-DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFAELE 69
Query: 221 HWEETDDPWTEHARWFSSCPYVKLVK 246
            WE  DDP  EH +  S C ++ + K
Sbjct: 70  GWEPDDDPIEEHKKHSSGCAFLSVKK 95

>pdb|1F3H|A Chain A, X-Ray Crystal Structure Of The Human Anti-Apoptotic Protein Survivin Length = 142

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 166 PPAFPNYATYESRLRSFDSWPI--SLRLKPVTLTEAGFFY---TGKADQTLCFRCGGGLK 220
           PPA+  +   + R+ +F +WP        P  + EAGF +     + D   CF C   L+
Sbjct: 7   PPAWQPFLK-DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDMAQCFFCFKELE 65
Query: 221 HWEETDDPWTEHARWFSSCPYVKLVK 246
            WE  DDP  EH +  S C ++ + K
Sbjct: 66  GWEPDDDPIEEHKKHSSGCAFLSVKK 91

>pdb|3UEI|A Chain A, Crystal Structure Of Human Survivin E65a Mutant Length = 146

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 42  RLDSFKNSWPLTYLSA---KQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDP 98
           R+ +FKN WP     A   ++MA AGF     +      D  +C FC  EL  W   DDP
Sbjct: 22  RISTFKN-WPFLEGCACTPERMAEAGFIHCPTENE---PDLAQCFFCFKELAGWEPDDDP 77
Query: 99  LKDHEKWSPNCWFL 112
           +++H+K S  C FL
Sbjct: 78  IEEHKKHSSGCAFL 91

>pdb|3UEI|A Chain A, Crystal Structure Of Human Survivin E65a Mutant Length = 146

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 166 PPAFPNYATYESRLRSFDSWPI--SLRLKPVTLTEAGFFY---TGKADQTLCFRCGGGLK 220
           PPA+  +   + R+ +F +WP        P  + EAGF +     + D   CF C   L 
Sbjct: 11  PPAWQPFLK-DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELA 69
Query: 221 HWEETDDPWTEHARWFSSCPYVKLVK 246
            WE  DDP  EH +  S C ++ + K
Sbjct: 70  GWEPDDDPIEEHKKHSSGCAFLSVKK 95

>pdb|1M4M|A Chain A, Mouse Survivin Length = 140

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 42  RLDSFKNSWPLTYLSA---KQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDP 98
           R+ +FKN WP     A   ++MA AGF     +      D  +C FC  EL  W   D+P
Sbjct: 18  RIATFKN-WPFLEDCACTPERMAEAGFIHCPTENE---PDLAQCFFCFKELEGWEPDDNP 73
Query: 99  LKDHEKWSPNCWFL 112
           +++H K SP C FL
Sbjct: 74  IEEHRKHSPGCAFL 87

>pdb|3UEC|A Chain A, Crystal Structure Of Human Survivin Bound To Histone H3 Phosphorylated On Threonine-3. Length = 146

Iteration: 1
 Score = 45.1 bits (105), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 166 PPAFPNYATYESRLRSFDSWPI--SLRLKPVTLTEAGFFY---TGKADQTLCFRCGGGLK 220
           PPA+  +   + R+ +F +WP        P  + EAGF +     + D   CF C   L+
Sbjct: 11  PPAWQPFLK-DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELE 69
Query: 221 HWEETDDPWTEHARWFSSCPYVKLVK 246
            WE  DDP  EH +  S C ++ + K
Sbjct: 70  GWEPDDDPIEEHKKHSSGCAFLSVKK 95

>pdb|1E31|A Chain A, Survivin Dimer H. Sapiens Length = 142

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 166 PPAFPNYATYESRLRSFDSWPI--SLRLKPVTLTEAGFFY---TGKADQTLCFRCGGGLK 220
           PPA+  +   + R+ +F +WP        P  + EAGF +     + D   CF C   L+
Sbjct: 7   PPAWQPFLK-DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELE 65
Query: 221 HWEETDDPWTEHARWFSSCPYVKLVK 246
            WE  DDP  EH +  S C ++ + K
Sbjct: 66  GWEPDDDPIEEHKKHSSGCAFLSVKK 91

>pdb|3UEH|A Chain A, Crystal Structure Of Human Survivin H80a Mutant Length = 146

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 166 PPAFPNYATYESRLRSFDSWPI--SLRLKPVTLTEAGFFY---TGKADQTLCFRCGGGLK 220
           PPA+  +   + R+ +F +WP        P  + EAGF +     + D   CF C   L+
Sbjct: 11  PPAWQPFLK-DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELE 69
Query: 221 HWEETDDPWTEHARWFSSCPYVKLVK 246
            WE  DDP  EH +  S C ++ + K
Sbjct: 70  GWEPDDDPIEEHKKASSGCAFLSVKK 95

>pdb|3UIG|A Chain A, Crystal Structure Of Human Survivin In Complex With T3 Phosphorylated H3(1-15) Peptide Length = 143

Iteration: 1
 Score = 44.7 bits (104), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 6/86 (6%)
Query: 166 PPAFPNYATYESRLRSFDSWPI--SLRLKPVTLTEAGFFY---TGKADQTLCFRCGGGLK 220
           PPA+  +   + R+ +F +WP        P  + EAGF +     + D   CF C   L+
Sbjct: 8   PPAWQPFLK-DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELE 66
Query: 221 HWEETDDPWTEHARWFSSCPYVKLVK 246
            WE  DDP  EH +  S C ++ + K
Sbjct: 67  GWEPDDDPIEEHKKHSSGCAFLSVKK 92

>pdb|1XOX|A Chain A, Solution Structure Of Human Survivin Length = 117

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 42/89 (47%), Gaps = 6/89 (6%)
Query: 166 PPAFPNYATYESRLRSFDSWPI--SLRLKPVTLTEAGFFY---TGKADQTLCFRCGGGLK 220
           PPA+  +   + R+ +F +WP        P  + EAGF +     + D   CF C   L+
Sbjct: 7   PPAWQPFLK-DHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELE 65
Query: 221 HWEETDDPWTEHARWFSSCPYVKLVKGQE 249
            WE  DDP  EH +  S C ++ + K  E
Sbjct: 66  GWEPDDDPIEEHKKHSSGCAFLSVKKQFE 94

>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral Iap Repeat-Containing Protein 4 From Homo Sapiens Length = 75

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 299 RLCKICYQREMGVVFLPCGHIVAC 322
           +LCKIC  R + +VF+PCGH+V C
Sbjct: 26  KLCKICMDRNIAIVFVPCGHLVTC 49

>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain Length = 74

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 299 RLCKICYQREMGVVFLPCGHIVAC 322
           +LCKIC  R + +VF+PCGH+V C
Sbjct: 25  KLCKICMDRNIAIVFVPCGHLVTC 48

>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain Length = 74

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 299 RLCKICYQREMGVVFLPCGHIVAC 322
           +LCKIC  R + +VF+PCGH+V C
Sbjct: 25  KLCKICMDRNIAIVFVPCGHLVTC 48

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	324
3d9t_A	97	Baculoviral IAP repeat-containing protein 2; zinc	1e-41
3d9t_A	97	Baculoviral IAP repeat-containing protein 2; zinc	5e-22
1jd5_A	124	DIAP1, apoptosis 1 inhibitor; IAP, caspase activat	3e-41
1jd5_A	124	DIAP1, apoptosis 1 inhibitor; IAP, caspase activat	2e-20
2i3h_A	133	Baculoviral IAP repeat-containing protein 7; zinc	7e-41
2i3h_A	133	Baculoviral IAP repeat-containing protein 7; zinc	7e-21
3mup_A	122	Baculoviral IAP repeat-containing protein 2; zinc-	1e-40
3mup_A	122	Baculoviral IAP repeat-containing protein 2; zinc-	1e-21
2vm5_A	106	Baculoviral IAP repeat-containing protein 1; apopt	9e-40
2vm5_A	106	Baculoviral IAP repeat-containing protein 1; apopt	2e-22
3hl5_A	95	Baculoviral IAP repeat-containing protein 4; BIR,	1e-38
3hl5_A	95	Baculoviral IAP repeat-containing protein 4; BIR,	2e-21
1g73_C	121	Inhibitors of apoptosis-like protein ILP; helix bu	1e-37
1g73_C	121	Inhibitors of apoptosis-like protein ILP; helix bu	3e-20
2poi_A	94	Baculoviral IAP repeat-containing protein 4; zinc	2e-32
2poi_A	94	Baculoviral IAP repeat-containing protein 4; zinc	2e-22
3m1d_A	85	Baculoviral IAP repeat-containing protein 2; BIR,	3e-32
3m1d_A	85	Baculoviral IAP repeat-containing protein 2; BIR,	5e-22
1i4o_C	141	X-linked IAP, baculoviral IAP repeat-containing pr	9e-32
1i4o_C	141	X-linked IAP, baculoviral IAP repeat-containing pr	6e-19
2qra_D	111	XIAP, baculoviral IAP repeat-containing protein 4,	1e-31
2qra_D	111	XIAP, baculoviral IAP repeat-containing protein 4,	2e-22
2qfa_A	142	Baculoviral IAP repeat-containing protein 5; three	4e-31
2qfa_A	142	Baculoviral IAP repeat-containing protein 5; three	7e-22
3siq_A	136	Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase;	6e-31
3siq_A	136	Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase;	3e-25
1se0_A	116	Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspas	1e-29
1se0_A	116	Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspas	7e-26
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	5e-29
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	5e-26
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	2e-08
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	4e-08
2ea5_A	68	Cell growth regulator with ring finger domain prot	4e-08
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	6e-05
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	3e-04

>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger, apoptosis, cytoplasm, metal-binding, polymorphism, zinc, zinc-finger, alternative splicing, hydrolase, protease; 1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A* 2uvl_A Length = 97

 Score =  138 bits (350), Expect = 1e-41
 Identities = 40/93 (43%), Positives = 60/93 (64%)

Query: 164 NSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWE 223
            S  +  +  T+ +R+R+F  WP S+ ++P  L  AGF+Y G+ D   CF C GGL+ WE
Sbjct: 3   GSSISNLSMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWE 62

Query: 224 ETDDPWTEHARWFSSCPYVKLVKGQEFINQVIG 256
             DDPW EHA+WF  C ++  +KGQEF++++ G
Sbjct: 63  SGDDPWVEHAKWFPRCEFLIRMKGQEFVDEIQG 95

>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger, apoptosis, cytoplasm, metal-binding, polymorphism, zinc, zinc-finger, alternative splicing, hydrolase, protease; 1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A* 2uvl_A Length = 97

 Score = 88.0 bits (218), Expect = 5e-22
 Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 8/86 (9%)

Query: 32  RKQNMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELG 90
              +M     R+ +F   WP +  +  +Q+A+AGFY++G+       DDVKC  C   L 
Sbjct: 7   SNLSMQTHAARMRTFMY-WPSSVPVQPEQLASAGFYYVGRN------DDVKCFCCDGGLR 59

Query: 91  KWVQGDDPLKDHEKWSPNCWFLRRLK 116
            W  GDDP  +H KW P C FL R+K
Sbjct: 60  CWESGDDPWVEHAKWFPRCEFLIRMK 85

>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A 1jd6_A 1q4q_A Length = 124

 Score =  139 bits (351), Expect = 3e-41
 Identities = 48/97 (49%), Positives = 63/97 (64%)

Query: 160 GIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGL 219
               N  P +P YA   +RLR+F++WP +L+ KP  L EAGFFYTG  D+  CF CGGGL
Sbjct: 11  AASGNYFPQYPEYAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGL 70

Query: 220 KHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQVIG 256
             W + D+PW +HA W S C +VKL+KGQ +I+ V  
Sbjct: 71  MDWNDNDEPWEQHALWLSQCRFVKLMKGQLYIDTVAA 107

>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A 1jd6_A 1q4q_A Length = 124

 Score = 84.3 bits (208), Expect = 2e-20
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 8/86 (9%)

Query: 32  RKQNMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELG 90
           +     +E  RL +F+  WP        Q+A AGF++ G        D V+C  CG  L 
Sbjct: 19  QYPEYAIETARLRTFEA-WPRNLKQKPHQLAEAGFFYTGVG------DRVRCFSCGGGLM 71

Query: 91  KWVQGDDPLKDHEKWSPNCWFLRRLK 116
            W   D+P + H  W   C F++ +K
Sbjct: 72  DWNDNDEPWEQHALWLSQCRFVKLMK 97

>2i3h_A Baculoviral IAP repeat-containing protein 7; zinc binding, peptide complex, apoptosis inhibition, peptidomimetic, small molecule, drug design, inhibitor/apoptosis complex; HET: BTB; 1.62A {Homo sapiens} SCOP: g.52.1.1 PDB: 2i3i_A* 3f7h_A* 3f7i_A* 3gt9_A* 3gta_A* 1tw6_A* 3uw5_A* 3f7g_A* 1oxn_A* 1oxq_A* 1oy7_A* Length = 133

 Score =  138 bits (349), Expect = 7e-41
 Identities = 49/117 (41%), Positives = 64/117 (54%)

Query: 138 SKSEVSQSCSQPNQVVSSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLT 197
           S  EV +            E  G   +  PAFP   + E RL SF  WP++  + P  L 
Sbjct: 11  SSGEVPRGSHMLETEEEEEEGAGATLSRGPAFPGMGSEELRLASFYDWPLTAEVPPELLA 70

Query: 198 EAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQV 254
            AGFF+TG  D+  CF C GGL+ W+  DDPWTEHA+WF  C ++   KGQE+IN +
Sbjct: 71  AAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTEHAKWFPGCQFLLRSKGQEYINNI 127

>2i3h_A Baculoviral IAP repeat-containing protein 7; zinc binding, peptide complex, apoptosis inhibition, peptidomimetic, small molecule, drug design, inhibitor/apoptosis complex; HET: BTB; 1.62A {Homo sapiens} SCOP: g.52.1.1 PDB: 2i3i_A* 3f7h_A* 3f7i_A* 3gt9_A* 3gta_A* 1tw6_A* 3uw5_A* 3f7g_A* 1oxn_A* 1oxq_A* 1oy7_A* Length = 133

 Score = 85.9 bits (212), Expect = 7e-21
 Identities = 39/107 (36%), Positives = 51/107 (47%), Gaps = 8/107 (7%)

Query: 11  HLPPTNMNDNRSTSTLLDKCSRKQNMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLG 69
           H+  T   +       L +      M  E  RL SF + WPLT  +  + +AAAGF+  G
Sbjct: 20  HMLETEEEEEEGAGATLSRGPAFPGMGSEELRLASFYD-WPLTAEVPPELLAAAGFFHTG 78

Query: 70  KKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRRLK 116
            +      D V+C FC   L  W +GDDP  +H KW P C FL R K
Sbjct: 79  HQ------DKVRCFFCYGGLQSWKRGDDPWTEHAKWFPGCQFLLRSK 119

>3mup_A Baculoviral IAP repeat-containing protein 2; zinc-finger motif, apoptosis inhibitor; HET: SMK; 2.60A {Homo sapiens} PDB: 3oz1_A* Length = 122

 Score =  137 bits (346), Expect = 1e-40
 Identities = 40/101 (39%), Positives = 61/101 (60%)

Query: 156 LEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRC 215
           +E          +  +  T+ +R+R+F  WP S+ ++P  L  AGF+Y G+ D   CF C
Sbjct: 1   MENSLETLRFSISNLSMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCC 60

Query: 216 GGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQVIG 256
            GGL+ WE  DDPW EHA+WF  C ++  +KGQEF++++ G
Sbjct: 61  DGGLRCWESGDDPWVEHAKWFPRCEFLIRMKGQEFVDEIQG 101

>3mup_A Baculoviral IAP repeat-containing protein 2; zinc-finger motif, apoptosis inhibitor; HET: SMK; 2.60A {Homo sapiens} PDB: 3oz1_A* Length = 122

 Score = 87.4 bits (216), Expect = 1e-21
 Identities = 33/86 (38%), Positives = 46/86 (53%), Gaps = 8/86 (9%)

Query: 32  RKQNMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELG 90
              +M     R+ +F   WP +  +  +Q+A+AGFY++G+       DDVKC  C   L 
Sbjct: 13  SNLSMQTHAARMRTFMY-WPSSVPVQPEQLASAGFYYVGRN------DDVKCFCCDGGLR 65

Query: 91  KWVQGDDPLKDHEKWSPNCWFLRRLK 116
            W  GDDP  +H KW P C FL R+K
Sbjct: 66  CWESGDDPWVEHAKWFPRCEFLIRMK 91

>2vm5_A Baculoviral IAP repeat-containing protein 1; apoptosis; 1.80A {Homo sapiens} Length = 106

 Score =  134 bits (339), Expect = 9e-40
 Identities = 42/91 (46%), Positives = 54/91 (59%), Gaps = 1/91 (1%)

Query: 166 PPAFPNYATYESRLRSFDSWPISLR-LKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEE 224
                 Y   E+RL SF +WP  ++ + P  L+EAGF +TGK D   CF CGG L +WEE
Sbjct: 12  RGGKMRYQEEEARLASFRNWPFYVQGISPCVLSEAGFVFTGKQDTVQCFSCGGCLGNWEE 71

Query: 225 TDDPWTEHARWFSSCPYVKLVKGQEFINQVI 255
            DDPW EHA+WF  C +++  K  E I Q I
Sbjct: 72  GDDPWKEHAKWFPKCEFLRSKKSSEEITQYI 102

>2vm5_A Baculoviral IAP repeat-containing protein 1; apoptosis; 1.80A {Homo sapiens} Length = 106

 Score = 89.2 bits (221), Expect = 2e-22
 Identities = 38/88 (43%), Positives = 46/88 (52%), Gaps = 9/88 (10%)

Query: 32  RKQNMTLECDRLDSFKNSWPLTY--LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIEL 89
            K     E  RL SF+N WP     +S   ++ AGF F GK+      D V+C  CG  L
Sbjct: 14  GKMRYQEEEARLASFRN-WPFYVQGISPCVLSEAGFVFTGKQ------DTVQCFSCGGCL 66

Query: 90  GKWVQGDDPLKDHEKWSPNCWFLRRLKK 117
           G W +GDDP K+H KW P C FLR  K 
Sbjct: 67  GNWEEGDDPWKEHAKWFPKCEFLRSKKS 94

>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small molecule drug discovery, structur drug design, ligase, metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB: 1nw9_A 2vsl_A Length = 95

 Score =  131 bits (331), Expect = 1e-38
 Identities = 37/88 (42%), Positives = 55/88 (62%), Gaps = 2/88 (2%)

Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
           P  P+ A YE+R+ +F +W  S+      L  AGF+  G+ D+  CF CGGGL  W+ ++
Sbjct: 6   PRNPSMADYEARIFTFGTWIYSV--NKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSE 63

Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
           DPW +HA+W+  C Y+   KGQE+IN +
Sbjct: 64  DPWEQHAKWYPGCKYLLEQKGQEYINNI 91

>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small molecule drug discovery, structur drug design, ligase, metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB: 1nw9_A 2vsl_A Length = 95

 Score = 86.0 bits (213), Expect = 2e-21
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 8/82 (9%)

Query: 35  NMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQ 94
           +M     R+ +F   W  + ++ +Q+A AGFY LG+       D VKC  CG  L  W  
Sbjct: 10  SMADYEARIFTFGT-WIYS-VNKEQLARAGFYALGEG------DKVKCFHCGGGLTDWKP 61

Query: 95  GDDPLKDHEKWSPNCWFLRRLK 116
            +DP + H KW P C +L   K
Sbjct: 62  SEDPWEQHAKWYPGCKYLLEQK 83

>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB: 3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A* 3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A Length = 121

 Score =  129 bits (326), Expect = 1e-37
 Identities = 37/105 (35%), Positives = 59/105 (56%), Gaps = 2/105 (1%)

Query: 162 HKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKH 221
           +  + P  P+ A YE+R+ +F +W  S+      L  AGF+  G+ D+  CF CGGGL  
Sbjct: 15  NSTNLPRNPSMADYEARIFTFGTWIYSV--NKEQLARAGFYALGEGDKVKCFHCGGGLTD 72

Query: 222 WEETDDPWTEHARWFSSCPYVKLVKGQEFINQVIGHKEVANDPIT 266
           W+ ++DPW +HA+W+  C Y+   KGQE+IN +     +    + 
Sbjct: 73  WKPSEDPWEQHAKWYPGCKYLLEQKGQEYINNIHLTHSLEECLVR 117

>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB: 3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A* 3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A Length = 121

 Score = 83.9 bits (207), Expect = 3e-20
 Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 9/100 (9%)

Query: 17  MNDNRSTSTLLDKCSRKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRF 76
           ++ +R+     +       M     R+ +F   W  + ++ +Q+A AGFY LG+      
Sbjct: 7   VSSDRNFPNSTNLPRNPS-MADYEARIFTFGT-WIYS-VNKEQLARAGFYALGEG----- 58

Query: 77  SDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRRLK 116
            D VKC  CG  L  W   +DP + H KW P C +L   K
Sbjct: 59  -DKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLEQK 97

>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling protein/apoptosis complex; 1.80A {Homo sapiens} PDB: 2pop_B Length = 94

 Score =  114 bits (288), Expect = 2e-32
 Identities = 20/80 (25%), Positives = 34/80 (42%)

Query: 164 NSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWE 223
                   +    +RL++F ++P    +   TL  AGF YTG+ D   CF C   +  W+
Sbjct: 10  ADINKEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQ 69

Query: 224 ETDDPWTEHARWFSSCPYVK 243
             D     H +   +C ++ 
Sbjct: 70  YGDSAVGRHRKVSPNCRFIN 89

>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling protein/apoptosis complex; 1.80A {Homo sapiens} PDB: 2pop_B Length = 94

 Score = 88.8 bits (220), Expect = 2e-22
 Identities = 29/99 (29%), Positives = 45/99 (45%), Gaps = 9/99 (9%)

Query: 19  DNRSTSTLLDKCSRKQNMTLECDRLDSFKNSWPLT-YLSAKQMAAAGFYFLGKKENGRFS 77
            +  T    D   +++    E +RL +F N +P    +SA  +A AGF + G+       
Sbjct: 2   SHMKTCVPADIN-KEEEFVEEFNRLKTFAN-FPSGSPVSASTLARAGFLYTGEG------ 53

Query: 78  DDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRRLK 116
           D V+C  C   + +W  GD  +  H K SPNC F+    
Sbjct: 54  DTVRCFSCHAAVDRWQYGDSAVGRHRKVSPNCRFINGFY 92

>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis, cytoplasm, polymorphism, zinc, zinc-FIN metal binding protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D Length = 85

 Score =  114 bits (287), Expect = 3e-32
 Identities = 21/80 (26%), Positives = 44/80 (55%)

Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
            +  +++    R+ ++ ++P  + +   +L  AGF+YTG  D+  CF CG  L +W+  D
Sbjct: 4   GSKYDFSCELYRMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKLGD 63

Query: 227 DPWTEHARWFSSCPYVKLVK 246
            P  +H + + SC +++ + 
Sbjct: 64  SPIQKHKQLYPSCSFIQNLV 83

>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis, cytoplasm, polymorphism, zinc, zinc-FIN metal binding protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D Length = 85

 Score = 87.6 bits (217), Expect = 5e-22
 Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 8/85 (9%)

Query: 33  KQNMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGK 91
           K + + E  R+ ++   +P    +S + +A AGFY+ G        D VKC  CG+ L  
Sbjct: 6   KYDFSCELYRMSTYST-FPAGVPVSERSLARAGFYYTGVN------DKVKCFCCGLMLDN 58

Query: 92  WVQGDDPLKDHEKWSPNCWFLRRLK 116
           W  GD P++ H++  P+C F++ L 
Sbjct: 59  WKLGDSPIQKHKQLYPSCSFIQNLV 83

>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4; protease-inhibitor, apoptosis-hydrolase complex; 2.40A {Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A Length = 141

 Score =  115 bits (288), Expect = 9e-32
 Identities = 38/110 (34%), Positives = 55/110 (50%)

Query: 140 SEVSQSCSQPNQVVSSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEA 199
           +    S +  + ++ + + + I     P  P   + E+RL+SF +WP    L P  L  A
Sbjct: 9   ALDRPSETHADYLLRTGQVVDISDTIYPRNPAMYSEEARLKSFQNWPDYAHLTPRELASA 68

Query: 200 GFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQE 249
           G +YTG  DQ  CF CGG LK+WE  D  W+EH R F +C +V       
Sbjct: 69  GLYYTGIGDQVQCFCCGGKLKNWEPCDRAWSEHRRHFPNCFFVLGRNLNI 118

>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4; protease-inhibitor, apoptosis-hydrolase complex; 2.40A {Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A Length = 141

 Score = 80.9 bits (199), Expect = 6e-19
 Identities = 27/107 (25%), Positives = 44/107 (41%), Gaps = 6/107 (5%)

Query: 17  MNDNRSTSTLLDKCSRKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRF 76
           +   +          R   M  E  RL SF+N     +L+ +++A+AG Y+ G       
Sbjct: 22  LRTGQVVDISDTIYPRNPAMYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIG----- 76

Query: 77  SDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRRLKKGNTESA 123
            D V+C  CG +L  W   D    +H +  PNC+F+          +
Sbjct: 77  -DQVQCFCCGGKLKNWEPCDRAWSEHRRHFPNCFFVLGRNLNIRSES 122

>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor; apoptosis, signaling protein, zinc binding; 2.50A {Homo sapiens} Length = 111

 Score =  113 bits (284), Expect = 1e-31
 Identities = 21/98 (21%), Positives = 35/98 (35%)

Query: 146 CSQPNQVVSSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTG 205
                 V                   +    +RL++F ++P    +   TL  AGF YTG
Sbjct: 9   HHSSGLVPRGSHMKTCVPADINKEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTG 68

Query: 206 KADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVK 243
           + D   CF C   +  W+  D     H +   +C ++ 
Sbjct: 69  EGDTVRCFSCHAAVDRWQYGDSAVGRHRKVSPNCRFIN 106

>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor; apoptosis, signaling protein, zinc binding; 2.50A {Homo sapiens} Length = 111

 Score = 89.3 bits (221), Expect = 2e-22
 Identities = 28/103 (27%), Positives = 44/103 (42%), Gaps = 7/103 (6%)

Query: 13  PPTNMNDNRSTSTLLDKCSRKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKE 72
                  +  T    D   +++    E +RL +F N    + +SA  +A AGF + G+  
Sbjct: 13  GLVPRGSHMKTCVPADIN-KEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEG- 70

Query: 73  NGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRRL 115
                D V+C  C   + +W  GD  +  H K SPNC F+   
Sbjct: 71  -----DTVRCFSCHAAVDRWQYGDSAVGRHRKVSPNCRFINGF 108

>2qfa_A Baculoviral IAP repeat-containing protein 5; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens} SCOP: g.52.1.1 PDB: 1e31_A* 4a0i_A 4a0j_A* 4a0n_A* 2raw_A 3uec_A* 3ued_A* 3uef_A 3uig_A* 3uih_A 3uii_A 1f3h_A 3uee_A 3ueg_A* 3uei_A 3ueh_A* 3uik_A 3uij_A 1m4m_A 2rax_A ... Length = 142

 Score =  113 bits (283), Expect = 4e-31
 Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 5/95 (5%)

Query: 164 NSPPAFPNYATYESRLRSFDSWPI--SLRLKPVTLTEAGFFYTGKA---DQTLCFRCGGG 218
            + P        + R+ +F +WP        P  + EAGF +       D   CF C   
Sbjct: 4   PTLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKE 63

Query: 219 LKHWEETDDPWTEHARWFSSCPYVKLVKGQEFINQ 253
           L+ WE  DDP  EH +  S C ++ + K  E +  
Sbjct: 64  LEGWEPDDDPIEEHKKHSSGCAFLSVKKQFEELTL 98

>2qfa_A Baculoviral IAP repeat-containing protein 5; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens} SCOP: g.52.1.1 PDB: 1e31_A* 4a0i_A 4a0j_A* 4a0n_A* 2raw_A 3uec_A* 3ued_A* 3uef_A 3uig_A* 3uih_A 3uii_A 1f3h_A 3uee_A 3ueg_A* 3uei_A 3ueh_A* 3uik_A 3uij_A 1m4m_A 2rax_A ... Length = 142

 Score = 88.6 bits (219), Expect = 7e-22
 Identities = 33/120 (27%), Positives = 58/120 (48%), Gaps = 11/120 (9%)

Query: 35  NMTLECDRLDSFKNSWPLT---YLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGK 91
              L+  R+ +FKN WP       + ++MA AGF     +      D  +C FC  EL  
Sbjct: 11  QPFLKDHRISTFKN-WPFLEGCACTPERMAEAGFIHCPTENEP---DLAQCFFCFKELEG 66

Query: 92  WVQGDDPLKDHEKWSPNCWFLRRLKKGNTESAGYDTCGSLIIEPPKSKSEVSQSCSQPNQ 151
           W   DDP+++H+K S  C FL  +KK   E    +    L ++  ++K+++++  +   +
Sbjct: 67  WEPDDDPIEEHKKHSSGCAFL-SVKKQFEELTLGE---FLKLDRERAKNKIAKETNNKKK 122

>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila melanogaster} Length = 136

 Score =  112 bits (282), Expect = 6e-31
 Identities = 27/110 (24%), Positives = 48/110 (43%), Gaps = 4/110 (3%)

Query: 142 VSQSCSQPNQVV---SSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTE 198
           ++         V   ++  +L  +  +     +    E+RL++F  WP+   L    L +
Sbjct: 1   MASVVPIAFDQVDNNTNATQLFKNNINKTRMNDLNREETRLKTFTDWPLD-WLDKRQLAQ 59

Query: 199 AGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQ 248
            G ++T   D+  CF CG  +  WE+ D P  EH RW  +CP ++     
Sbjct: 60  TGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPEHQRWSPNCPLLRRRTTN 109

>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila melanogaster} Length = 136

 Score = 97.8 bits (243), Expect = 3e-25
 Identities = 40/106 (37%), Positives = 56/106 (52%), Gaps = 8/106 (7%)

Query: 14  PTNMNDNRSTSTLLDKCSRKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKEN 73
             N N  +     ++K  R  ++  E  RL +F + WPL +L  +Q+A  G YF      
Sbjct: 13  DNNTNATQLFKNNINKT-RMNDLNREETRLKTFTD-WPLDWLDKRQLAQTGMYFTHAG-- 68

Query: 74  GRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRRLKKGN 119
               D VKC FCG+E+G W Q D P+ +H++WSPNC  LRR    N
Sbjct: 69  ----DKVKCFFCGVEIGSWEQEDQPVPEHQRWSPNCPLLRRRTTNN 110

>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A 3sip_E Length = 116

 Score =  108 bits (271), Expect = 1e-29
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 1/84 (1%)

Query: 165 SPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEE 224
           +     +    E+RL++F  WP+   L    L + G ++T   D+  CF CG  +  WE+
Sbjct: 5   NKTRMNDLNREETRLKTFTDWPLD-WLDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQ 63

Query: 225 TDDPWTEHARWFSSCPYVKLVKGQ 248
            D P  EH RW  +CP ++     
Sbjct: 64  EDQPVPEHQRWSPNCPLLRRRTTN 87

>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A 3sip_E Length = 116

 Score = 98.5 bits (245), Expect = 7e-26
 Identities = 41/110 (37%), Positives = 55/110 (50%), Gaps = 18/110 (16%)

Query: 31  SRKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELG 90
           +R  ++  E  RL +F + WPL +L  +Q+A  G YF          D VKC FCG+E+G
Sbjct: 7   TRMNDLNREETRLKTFTD-WPLDWLDKRQLAQTGMYFTHAG------DKVKCFFCGVEIG 59

Query: 91  KWVQGDDPLKDHEKWSPNCWFLRRLKKGN-----------TESAGYDTCG 129
            W Q D P+ +H++WSPNC  LRR    N                YD CG
Sbjct: 60  SWEQEDQPVPEHQRWSPNCPLLRRRTTNNVPINAEALDRILPPISYDICG 109

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A Length = 345

 Score =  113 bits (282), Expect = 5e-29
 Identities = 40/99 (40%), Positives = 61/99 (61%)

Query: 171 NYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWT 230
           +  T+ +R+R+F  WP S+ ++P  L  AGF+Y G+ D   CF C GGL+ WE  DDPW 
Sbjct: 2   SMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWV 61

Query: 231 EHARWFSSCPYVKLVKGQEFINQVIGHKEVANDPITLQP 269
           EHA+WF  C ++  +KGQEF++++ G      + +   P
Sbjct: 62  EHAKWFPRCEFLIRMKGQEFVDEIQGRYPHLLEQLLSTP 100

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A Length = 345

 Score =  105 bits (260), Expect = 5e-26
 Identities = 61/338 (18%), Positives = 107/338 (31%), Gaps = 70/338 (20%)

Query: 35  NMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWV 93
           +M     R+ +F   WP +  +  +Q+A+AGFY++G+       DDVKC  C   L  W 
Sbjct: 2   SMQTHAARMRTFMY-WPSSVPVQPEQLASAGFYYVGRN------DDVKCFSCDGGLRCWE 54

Query: 94  QGDDPLKDHEKWSPNCWFLRRLKKGNTESAGYDTCGSLIIEPPKSKSEVSQSCSQPNQVV 153
            GDDP  +H KW P C FL R+K       G +    +    P    ++  +    +   
Sbjct: 55  SGDDPWVEHAKWFPRCEFLIRMK-------GQEFVDEIQGRYPHLLEQLLSTPPIIHYGP 107

Query: 154 SSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCF 213
                     +      N    +S L    +  +  +     +   G  Y    D     
Sbjct: 108 GE------SSSEDAVMMNTPVVKSALEMGFNRDLVKQTVQSKILTTGENYKTVNDIVSAL 161

Query: 214 RCGGGLKHWEETDDPW--------------------------------------TEHARW 235
                 K  EE +                                          +    
Sbjct: 162 LNAEDEKREEEKEKQAEEMASDDLSLIRKNRMALFQQLTCVLPILDNLLKANVINKQEHD 221

Query: 236 FSSCPYVKLVKGQEFINQVIGHKEVANDPITLQPLHYIAETSTAVK-----------PTA 284
                    ++ +E I+ ++     A +          +     +              +
Sbjct: 222 IIKQKTQIPLQARELIDTILVKGNAAANIFKNSLKEIDSTLYKNLFVDKNMKYIPTEDVS 281

Query: 285 CSQDDKRPEPNSDGRLCKICYQREMGVVFLPCGHIVAC 322
               +++     + R CK+C  +E+ VVF+PCGH+V C
Sbjct: 282 GLSLEEQLRRLQEERTCKVCMDKEVSVVFIPCGHLVVC 319

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 14/47 (29%), Positives = 26/47 (55%)

Query: 276 TSTAVKPTACSQDDKRPEPNSDGRLCKICYQREMGVVFLPCGHIVAC 322
           + ++         +++     + +LCKIC  R + +VF+PCGH+V C
Sbjct: 3   SGSSGSLQKEISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTC 49

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79

 Score = 49.0 bits (117), Expect = 4e-08
 Identities = 11/27 (40%), Positives = 15/27 (55%)

Query: 296 SDGRLCKICYQREMGVVFLPCGHIVAC 322
            +  LC +C + E+   F PCGH V C
Sbjct: 16  KEAMLCMVCCEEEINSTFCPCGHTVCC 42

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 48.6 bits (116), Expect = 4e-08
 Identities = 9/37 (24%), Positives = 13/37 (35%)

Query: 286 SQDDKRPEPNSDGRLCKICYQREMGVVFLPCGHIVAC 322
           S          + + C +C    +  V LPC H   C
Sbjct: 3   SGSSGVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLC 39

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64

 Score = 39.4 bits (92), Expect = 6e-05
 Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 2/32 (6%)

Query: 293 EPNSDGRLCKICYQREMGVVFLP--CGHIVAC 322
            P +    C IC  R      +    GH++AC
Sbjct: 3   LPLNAIEPCVICQGRPKNGCIVHGKTGHLMAC 34

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 37.5 bits (87), Expect = 3e-04
 Identities = 7/30 (23%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 295 NSDGRLCKICY--QREMGVVFLPCGHIVAC 322
            +  + C +C    R+  ++    GH+V C
Sbjct: 4   QNLLKPCSLCEKRPRDGNIIHGRTGHLVTC 33

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	324
2i3h_A	133	Baculoviral IAP repeat-containing protein 7; zinc	99.97
3hl5_A	95	Baculoviral IAP repeat-containing protein 4; BIR,	99.97
1jd5_A	124	DIAP1, apoptosis 1 inhibitor; IAP, caspase activat	99.97
2vm5_A	106	Baculoviral IAP repeat-containing protein 1; apopt	99.97
3d9t_A	97	Baculoviral IAP repeat-containing protein 2; zinc	99.96
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	99.96
3mup_A	122	Baculoviral IAP repeat-containing protein 2; zinc-	99.96
3siq_A	136	Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase;	99.96
1g73_C	121	Inhibitors of apoptosis-like protein ILP; helix bu	99.96
1se0_A	116	Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspas	99.95
2poi_A	94	Baculoviral IAP repeat-containing protein 4; zinc	99.95
1i4o_C	141	X-linked IAP, baculoviral IAP repeat-containing pr	99.94
3m1d_A	85	Baculoviral IAP repeat-containing protein 2; BIR,	99.94
2qra_D	111	XIAP, baculoviral IAP repeat-containing protein 4,	99.94
2qfa_A	142	Baculoviral IAP repeat-containing protein 5; three	99.94
1se0_A	116	Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspas	99.93
2qfa_A	142	Baculoviral IAP repeat-containing protein 5; three	99.93
3siq_A	136	Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase;	99.93
2poi_A	94	Baculoviral IAP repeat-containing protein 4; zinc	99.93
3m1d_A	85	Baculoviral IAP repeat-containing protein 2; BIR,	99.92
1i4o_C	141	X-linked IAP, baculoviral IAP repeat-containing pr	99.92
2qra_D	111	XIAP, baculoviral IAP repeat-containing protein 4,	99.92
2vm5_A	106	Baculoviral IAP repeat-containing protein 1; apopt	99.91
3hl5_A	95	Baculoviral IAP repeat-containing protein 4; BIR,	99.91
3d9t_A	97	Baculoviral IAP repeat-containing protein 2; zinc	99.91
2i3h_A	133	Baculoviral IAP repeat-containing protein 7; zinc	99.9
1jd5_A	124	DIAP1, apoptosis 1 inhibitor; IAP, caspase activat	99.9
1g73_C	121	Inhibitors of apoptosis-like protein ILP; helix bu	99.9
3mup_A	122	Baculoviral IAP repeat-containing protein 2; zinc-	99.9
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	99.82
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.32
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	97.86
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	97.83
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	97.79
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	97.51
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	97.32
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	96.01
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	95.99
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	95.94
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	95.85
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	95.51
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	95.42
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	95.32
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	95.0
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	94.82
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	94.77
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	94.67
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	94.46
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	94.36
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	94.28
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	94.19
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	94.07
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	94.05
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	94.0
2ect_A	78	Ring finger protein 126; metal binding protein, st	93.67
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	93.62
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	93.5
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	93.31
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	93.11
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	92.75
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	92.44
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	92.41
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	92.26
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	92.25
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	92.24
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	91.93
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	91.63
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	91.44
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	91.09
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	90.5
1z6u_A	150	NP95-like ring finger protein isoform B; structura	90.14
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	89.77
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	89.69
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	89.49
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	89.41
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	89.14
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	88.14
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	86.11
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	85.34
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	83.78
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	82.13
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	81.24
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	80.84

>2i3h_A Baculoviral IAP repeat-containing protein 7; zinc binding, peptide complex, apoptosis inhibition, peptidomimetic, small molecule, drug design, inhibitor/apoptosis complex; HET: BTB; 1.62A {Homo sapiens} SCOP: g.52.1.1 PDB: 2i3i_A* 3f7h_A* 3f7i_A* 3gt9_A* 3gta_A* 1tw6_A* 3uw5_A* 3f7g_A* 1oxn_A* 1oxq_A* 1oy7_A*

Probab=99.97  E-value=6.5e-32  Score=226.49  Aligned_cols=96  Identities=46%  Similarity=0.948  Sum_probs=87.6

Q ss_pred             CCCCCCCCCCCCHHHHHhccccCCCCCCCChHHHHHcCCcccCCCCceEEeeeCCcccCCCCCCChHHHHHhhcCCCchh
Q psy3967         163 KNSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYV  242 (324)
Q Consensus       163 ~~~~p~~~~y~~~~~Rl~SF~~Wp~~~~~~~~~LA~AGFyytg~~D~v~Cf~Cg~~l~~W~~~DdP~~eH~~~~p~C~f~  242 (324)
                      ....|.++.|.++++||+||.+||....+++++||+|||||+|.+|.|+||+|+++|.+|+++||||+||++|+|+|.|+
T Consensus        36 ~~~~~~~~~m~~e~~RL~SF~~WP~~~~~~pe~LA~AGFYYtg~~D~V~Cf~C~~~L~~We~~DDP~~EH~r~~P~C~Fv  115 (133)
T 2i3h_A           36 LSRGPAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTEHAKWFPGCQFL  115 (133)
T ss_dssp             ---CCSCGGGCCHHHHHHTTTTCSCTTTSCHHHHHHTTEEECSSTTCEEETTTCCEEECCCTTCCHHHHHHHHCTTCHHH
T ss_pred             cCCCCCchhhhCHHHHHHHHhcCCCCcCCCHHHHHHcCCCCcCCCCEEEecccCCEeCCCCCCCCHHHHHHHHCcCCcee
Confidence            34578899999999999999999987678999999999999999999999999999999999999999999999999999


Q ss_pred             hhccchhHHHhhhccc
Q psy3967         243 KLVKGQEFINQVIGHK  258 (324)
Q Consensus       243 ~~~kg~~~i~~v~~~~  258 (324)
                      +..||++||++|+.++
T Consensus       116 ~~~Kg~~fv~~v~~~~  131 (133)
T 2i3h_A          116 LRSKGQEYINNIHLTH  131 (133)
T ss_dssp             HHHHCHHHHHHHC---
T ss_pred             hhcccHHHHHHHhhhC
Confidence            9999999999998654

>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small molecule drug discovery, structur drug design, ligase, metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB: 1nw9_A 2vsl_A

Probab=99.97  E-value=1.1e-31  Score=213.94  Aligned_cols=90  Identities=41%  Similarity=0.961  Sum_probs=86.0

Q ss_pred             CCCCCCCCCCHHHHHhccccCCCCCCCChHHHHHcCCcccCCCCceEEeeeCCcccCCCCCCChHHHHHhhcCCCchhhh
Q psy3967         165 SPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKL  244 (324)
Q Consensus       165 ~~p~~~~y~~~~~Rl~SF~~Wp~~~~~~~~~LA~AGFyytg~~D~v~Cf~Cg~~l~~W~~~DdP~~eH~~~~p~C~f~~~  244 (324)
                      ..|.+|.|.++++|++||.+||+.  +++++||+|||||+|.+|.|+||+|+++|.+|+++||||+||++|+|+|.|++.
T Consensus         4 ~~p~~~~m~~~~~Rl~TF~~Wp~~--~~~~~LA~AGFyy~g~~D~v~Cf~C~~~l~~We~~DdP~~eH~r~~p~C~f~~~   81 (95)
T 3hl5_A            4 MLPRNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLE   81 (95)
T ss_dssp             SSCSCGGGCSHHHHHHTTTTCCSS--SCHHHHHHTTEEECSSTTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCHHHHH
T ss_pred             CCCCCccccCHHHHHHHHcCCCCC--CCHHHHHhCCCeEcCCCCeEEecCCCCCccCcCCCCCHHHHHHHHCcCCcchHh
Confidence            357899999999999999999986  689999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhHHHhhhc
Q psy3967         245 VKGQEFINQVIG  256 (324)
Q Consensus       245 ~kg~~~i~~v~~  256 (324)
                      .||++||++|+.
T Consensus        82 ~kg~~fv~~i~~   93 (95)
T 3hl5_A           82 QKGQEYINNIHL   93 (95)
T ss_dssp             HTCHHHHHHHTT
T ss_pred             hccHHHHHHHHc
Confidence            999999999874

>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A 1jd6_A 1q4q_A

Probab=99.97  E-value=2.7e-31  Score=220.76  Aligned_cols=93  Identities=52%  Similarity=1.132  Sum_probs=89.0

Q ss_pred             CCCCCCCCCCCHHHHHhccccCCCCCCCChHHHHHcCCcccCCCCceEEeeeCCcccCCCCCCChHHHHHhhcCCCchhh
Q psy3967         164 NSPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVK  243 (324)
Q Consensus       164 ~~~p~~~~y~~~~~Rl~SF~~Wp~~~~~~~~~LA~AGFyytg~~D~v~Cf~Cg~~l~~W~~~DdP~~eH~~~~p~C~f~~  243 (324)
                      ...|.++.|.++++||+||.+||....+++++||+|||||+|.+|.|+||+|+++|.+|+++||||+||++|+|+|.|++
T Consensus        15 ~~~p~~p~~~~e~~Rl~TF~~WP~~~~~~p~~LA~AGFyYtg~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~~P~C~Fv~   94 (124)
T 1jd5_A           15 NYFPQYPEYAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWNDNDEPWEQHALWLSQCRFVK   94 (124)
T ss_dssp             CCCCSCGGGCSHHHHHHHGGGCCTTCSSCHHHHHHTTEEECSSTTCEEETTTCCEEECCCTTCCHHHHHHHHCTTCHHHH
T ss_pred             CCCCCChhhhCHHHHHHHHhhCCCCccCCHHHHHHcCCCCcCCCCEEEecCCCCEecCCCCCCCHHHHHHHHCcCCceee
Confidence            35688999999999999999999987788999999999999999999999999999999999999999999999999999


Q ss_pred             hccchhHHHhhhc
Q psy3967         244 LVKGQEFINQVIG  256 (324)
Q Consensus       244 ~~kg~~~i~~v~~  256 (324)
                      ++||++||+++..
T Consensus        95 ~~kg~~fv~~v~~  107 (124)
T 1jd5_A           95 LMKGQLYIDTVAA  107 (124)
T ss_dssp             HHHCHHHHHHHHH
T ss_pred             cccchHHHHHHHh
Confidence            9999999999986

>2vm5_A Baculoviral IAP repeat-containing protein 1; apoptosis; 1.80A {Homo sapiens}

Probab=99.97  E-value=2e-31  Score=216.43  Aligned_cols=94  Identities=45%  Similarity=0.924  Sum_probs=85.2

Q ss_pred             CCCCCCCCCCCHHHHHhccccCCCCCC-CChHHHHHcCCcccCCCCceEEeeeCCcccCCCCCCChHHHHHhhcCCCchh
Q psy3967         164 NSPPAFPNYATYESRLRSFDSWPISLR-LKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYV  242 (324)
Q Consensus       164 ~~~p~~~~y~~~~~Rl~SF~~Wp~~~~-~~~~~LA~AGFyytg~~D~v~Cf~Cg~~l~~W~~~DdP~~eH~~~~p~C~f~  242 (324)
                      +..|.++.|.++++|++||.+||.... +++++||+|||||+|.+|.|+||+|+++|.+|+++||||+||++|+|+|.|+
T Consensus        10 ~~~~~~~~~~~~~~Rl~TF~~WP~~~~~~~p~~LA~AGFyy~g~~D~V~Cf~C~~~L~~We~~DdP~~eH~r~~p~C~Fv   89 (106)
T 2vm5_A           10 RLRGGKMRYQEEEARLASFRNWPFYVQGISPCVLSEAGFVFTGKQDTVQCFSCGGCLGNWEEGDDPWKEHAKWFPKCEFL   89 (106)
T ss_dssp             CCC---CTTSSHHHHHHGGGGCCGGGTTSCHHHHHHTTEEECSSTTCEEETTTCCEEESCCTTCCHHHHHHHHCTTCHHH
T ss_pred             CCCCCchhhcCHHHHHHHHhcCCCCcccCCHHHHHHcCCCCcCCCCEEEccccCCEecCCCCCCCHHHHHHHHCcCCcch
Confidence            346888999999999999999998754 7899999999999999999999999999999999999999999999999999


Q ss_pred             hhccchhHHHhhhcc
Q psy3967         243 KLVKGQEFINQVIGH  257 (324)
Q Consensus       243 ~~~kg~~~i~~v~~~  257 (324)
                      +..||.+||+++++.
T Consensus        90 ~~~Kg~~~i~~~~~~  104 (106)
T 2vm5_A           90 RSKKSSEEITQYIQS  104 (106)
T ss_dssp             HHHHCCTTSCCCCCC
T ss_pred             hhccCHHHHHHHHHh
Confidence            999999999887754

>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger, apoptosis, cytoplasm, metal-binding, polymorphism, zinc, zinc-finger, alternative splicing, hydrolase, protease; 1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A* 2uvl_A

Probab=99.96  E-value=7.1e-31  Score=210.17  Aligned_cols=89  Identities=44%  Similarity=1.031  Sum_probs=84.1

Q ss_pred             CCCCCCCHHHHHhccccCCCCCCCChHHHHHcCCcccCCCCceEEeeeCCcccCCCCCCChHHHHHhhcCCCchhhhccc
Q psy3967         168 AFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKG  247 (324)
Q Consensus       168 ~~~~y~~~~~Rl~SF~~Wp~~~~~~~~~LA~AGFyytg~~D~v~Cf~Cg~~l~~W~~~DdP~~eH~~~~p~C~f~~~~kg  247 (324)
                      .+..|.++++|++||.+||....+++++||+|||||+|.+|.|+||+|+++|.+|+++||||+||++|+|+|.|++.+||
T Consensus         7 ~~~~m~~~~~Rl~TF~~Wp~~~~~~~~~LA~AGFyy~g~~D~v~Cf~C~~~l~~We~~Ddp~~eH~r~~p~C~f~~~~kg   86 (97)
T 3d9t_A            7 SNLSMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEFLIRMKG   86 (97)
T ss_dssp             -CGGGCSHHHHHHGGGGCCTTSSSCHHHHHHTTEEECSSTTCEEETTTCCEEECCCTTCCHHHHHHHHCTTBHHHHHHHC
T ss_pred             cchhhhCHHHHHHHHhcCCCcccCCHHHHHHcCCCCcCCCCEEEecCcCCEecCCCCCCCHHHHHHHhCccChhhHhhcc
Confidence            45568999999999999998877889999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHhhhc
Q psy3967         248 QEFINQVIG  256 (324)
Q Consensus       248 ~~~i~~v~~  256 (324)
                      ++||++++.
T Consensus        87 ~~~v~~~~~   95 (97)
T 3d9t_A           87 QEFVDEIQG   95 (97)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHHh
Confidence            999999985

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=99.96  E-value=2.8e-31  Score=256.17  Aligned_cols=88  Identities=44%  Similarity=1.061  Sum_probs=83.6

Q ss_pred             CCCCHHHHHhccccCCCCCCCChHHHHHcCCcccCCCCceEEeeeCCcccCCCCCCChHHHHHhhcCCCchhhhccchhH
Q psy3967         171 NYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEF  250 (324)
Q Consensus       171 ~y~~~~~Rl~SF~~Wp~~~~~~~~~LA~AGFyytg~~D~v~Cf~Cg~~l~~W~~~DdP~~eH~~~~p~C~f~~~~kg~~~  250 (324)
                      .|.++++|++||.+||+...+++++||+|||||+|.+|.|+||+|+++|.+|+++||||+||++|+|+|+|++..||++|
T Consensus         2 ~m~~~~~Rl~tF~~WP~~~~~~~~~lA~AGFyy~g~~D~v~Cf~C~~~l~~We~~DdP~~eH~~~~p~C~f~~~~kg~~~   81 (345)
T 3t6p_A            2 SMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFSCDGGLRCWESGDDPWVEHAKWFPRCEFLIRMKGQEF   81 (345)
T ss_dssp             TTSSHHHHHHHGGGSCTTCSSCHHHHHHTTEEECSSTTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCHHHHHHHCHHH
T ss_pred             CCccHHHHHHHHhhCCCcccCCHHHHHhCCCeecCCCCeEEecCCCCCccCCCCCCCHHHHHHHhCCCCccHHHhccHHH
Confidence            36789999999999998877899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhccc
Q psy3967         251 INQVIGHK  258 (324)
Q Consensus       251 i~~v~~~~  258 (324)
                      |++|+..+
T Consensus        82 i~~~~~~~   89 (345)
T 3t6p_A           82 VDEIQGRY   89 (345)
T ss_dssp             HHHHHHHS
T ss_pred             HHHHHHhC
Confidence            99998643

>3mup_A Baculoviral IAP repeat-containing protein 2; zinc-finger motif, apoptosis inhibitor; HET: SMK; 2.60A {Homo sapiens} SCOP: g.52.1.1 PDB: 3oz1_A* 4eb9_A*

Probab=99.96  E-value=9.2e-31  Score=217.18  Aligned_cols=94  Identities=41%  Similarity=0.961  Sum_probs=88.7

Q ss_pred             CCCCCCCCCHHHHHhccccCCCCCCCChHHHHHcCCcccCCCCceEEeeeCCcccCCCCCCChHHHHHhhcCCCchhhhc
Q psy3967         166 PPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLV  245 (324)
Q Consensus       166 ~p~~~~y~~~~~Rl~SF~~Wp~~~~~~~~~LA~AGFyytg~~D~v~Cf~Cg~~l~~W~~~DdP~~eH~~~~p~C~f~~~~  245 (324)
                      .+.++.|.++++|++||.+||....+++++||+|||||+|.+|.|+||+|+++|.+|+++||||+||++|+|+|.|++.+
T Consensus        11 ~~~~~~m~s~~~Rl~TF~~WP~~~~~~p~~LA~AGFyy~g~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~~P~C~Fv~~~   90 (122)
T 3mup_A           11 SISNLSMQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEFLIRM   90 (122)
T ss_dssp             CCSCGGGCSHHHHHHGGGGCCTTCSSCHHHHHHTTEEECSSTTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCHHHHHH
T ss_pred             CcCCccccCHHHHHHHHhcCCCcccCCHHHHHHCCCeEeCCCCeEEecCcCCEecCCCCCCCHHHHHHHHCcCCcchhhc
Confidence            46678899999999999999988778999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHhhhcccc
Q psy3967         246 KGQEFINQVIGHKE  259 (324)
Q Consensus       246 kg~~~i~~v~~~~~  259 (324)
                      ||++||++|+..++
T Consensus        91 kg~~fi~~i~~~~~  104 (122)
T 3mup_A           91 KGQEFVDEIQGRYP  104 (122)
T ss_dssp             HCHHHHHHHHHHCT
T ss_pred             CcHHHHHHHHHhch
Confidence            99999999997543

>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila melanogaster}

Probab=99.96  E-value=1.1e-30  Score=219.32  Aligned_cols=102  Identities=41%  Similarity=0.852  Sum_probs=81.9

Q ss_pred             ccCCCCCcccccccc----cccccCCcCHHHHHhccCCCCCCCCcCHHHHHHcCceecCCCCCCCCCCeEeecccCceec
Q psy3967          15 TNMNDNRSTSTLLDK----CSRKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELG   90 (324)
Q Consensus        15 ~~~~~~~~~~~~~~~----~~~~~~~~~e~~RL~SF~~~Wp~~~~~~~~LA~aGFyy~g~~~~~~~~D~V~C~~C~~~l~   90 (324)
                      ++|+||++.+++++|    +..+.+|.+|++||+||.+ ||+..+++++||+|||||+|.      +|+|+||+|+++|.
T Consensus         9 ~~~~~n~~~~~~~~~~~~~~~~~~dy~~e~~RL~TF~~-WP~~~~~p~~LA~AGFYYtG~------~D~V~Cf~C~~~L~   81 (136)
T 3siq_A            9 FDQVDNNTNATQLFKNNINKTRMNDLNREETRLKTFTD-WPLDWLDKRQLAQTGMYFTHA------GDKVKCFFCGVEIG   81 (136)
T ss_dssp             ---------------------CCCCTTBHHHHHHTTTT-CCCTTSCHHHHHHTTEEECSS------TTCEEETTTCCEEE
T ss_pred             hhhhccchhhHHhhccCcccccHHhhhCHHHHHHHHcc-CCCCcCCHHHHHHCCCeEcCC------CCeEEEeccCCEec
Confidence            699999999999998    2368889999999999999 999889999999999999999      99999999999999


Q ss_pred             cccCCCChhhhhcccCCCCccccccccCCccCC
Q psy3967          91 KWVQGDDPLKDHEKWSPNCWFLRRLKKGNTESA  123 (324)
Q Consensus        91 ~w~~~Ddp~~eH~~~sP~C~f~~~~~~~Nv~~~  123 (324)
                      +|+++|||+++|++|+|.|+|++...++|||+.
T Consensus        82 ~We~~DdP~~EH~r~sP~C~Fv~~~~~~Nvpi~  114 (136)
T 3siq_A           82 SWEQEDQPVPEHQRWSPNCPLLRRRTTNNVPIN  114 (136)
T ss_dssp             CCCTTCCHHHHHHHHCTTCTTTTTCCCCCBCSC
T ss_pred             CCCCCCCHHHHHHHHCcCCcceecccCCCccCC
Confidence            999999999999999999999999999999874

>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB: 3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A* 3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A

Probab=99.96  E-value=2.2e-30  Score=214.67  Aligned_cols=94  Identities=39%  Similarity=0.936  Sum_probs=86.2

Q ss_pred             CCCCCCCCCCHHHHHhccccCCCCCCCChHHHHHcCCcccCCCCceEEeeeCCcccCCCCCCChHHHHHhhcCCCchhhh
Q psy3967         165 SPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKL  244 (324)
Q Consensus       165 ~~p~~~~y~~~~~Rl~SF~~Wp~~~~~~~~~LA~AGFyytg~~D~v~Cf~Cg~~l~~W~~~DdP~~eH~~~~p~C~f~~~  244 (324)
                      ..|.++.|.++++|++||.+||+.  +++++||+|||||+|.+|.|+||+|+++|.+|+++||||+||++|+|+|.|++.
T Consensus        18 ~~p~~~~m~~~~~Rl~TF~~Wp~~--~~p~~LA~AGFyy~g~~D~V~Cf~C~~~L~~We~~DdP~~eH~r~~P~C~Fv~~   95 (121)
T 1g73_C           18 NLPRNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLE   95 (121)
T ss_dssp             -CCSCGGGCSHHHHHHTTTTCCSS--SCHHHHHHTTEEECSSTTCEEETTTCCEEESCCTTCCHHHHHHHHCTTCHHHHH
T ss_pred             CCCCChhhhCHHHHHHHHccCCCC--CCHHHHHHcCCCCcCCCCEEEcCcCCCCcCCCCCCCCHHHHHHHHCcCCcchhh
Confidence            468899999999999999999987  689999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhHHHhhhccccc
Q psy3967         245 VKGQEFINQVIGHKEV  260 (324)
Q Consensus       245 ~kg~~~i~~v~~~~~~  260 (324)
                      .||.+||++++.+.++
T Consensus        96 ~kg~~~v~~v~~~~p~  111 (121)
T 1g73_C           96 QKGQEYINNIHLTHSL  111 (121)
T ss_dssp             HHHHHHHHHHTC----
T ss_pred             ccchhhhccccccCCC
Confidence            9999999999976544

>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A 3sip_E

Probab=99.95  E-value=1.5e-28  Score=202.39  Aligned_cols=92  Identities=45%  Similarity=1.020  Sum_probs=82.4

Q ss_pred             ccccCCcCHHHHHhccCCCCCCCCcCHHHHHHcCceecCCCCCCCCCCeEeecccCceeccccCCCChhhhhcccCCCCc
Q psy3967          31 SRKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCW  110 (324)
Q Consensus        31 ~~~~~~~~e~~RL~SF~~~Wp~~~~~~~~LA~aGFyy~g~~~~~~~~D~V~C~~C~~~l~~w~~~Ddp~~eH~~~sP~C~  110 (324)
                      .++.+|.++++||+||.+ ||+..+++++||+|||||+|.      +|.|+||+|++.|.+|+++|||+++|++|+|.|+
T Consensus         7 ~~~~~~~~e~~Rl~TF~~-WP~~~~~~~~LA~AGFyy~g~------~D~V~Cf~C~~~L~~We~~DdP~~eH~r~~p~C~   79 (116)
T 1se0_A            7 TRMNDLNREETRLKTFTD-WPLDWLDKRQLAQTGMYFTHA------GDKVKCFFCGVEIGSWEQEDQPVPEHQRWSPNCP   79 (116)
T ss_dssp             ---CCTTBHHHHHTTCTT-CCCTTSCHHHHHHTTEEECSS------TTCEEETTTCCEEESCCTTCCHHHHHHHHCTTCT
T ss_pred             hhhhhhcCHHHHHHHHhh-CCCCcCCHHHHHHcCCcCcCC------CCEEEecCcCCEecCCCCCCCHHHHHHHHCccCc
Confidence            366789999999999999 999888999999999999999      9999999999999999999999999999999999


Q ss_pred             cccccccCCccCC-----------CcCCCC
Q psy3967         111 FLRRLKKGNTESA-----------GYDTCG  129 (324)
Q Consensus       111 f~~~~~~~Nv~~~-----------~~d~~~  129 (324)
                      |++....+|+++.           ++|+||
T Consensus        80 Fv~~~~~~nvp~~~~~~~~~~~~~~~d~cg  109 (116)
T 1se0_A           80 LLRRRTTNNVPINAEALDRILPPISYDICG  109 (116)
T ss_dssp             TTTTCCCCCBCSCHHHHHHHSCCCCCC---
T ss_pred             ceeeeccCccccCCCcccccCCCCCccccC
Confidence            9999999999874           678887

>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling protein/apoptosis complex; 1.80A {Homo sapiens} PDB: 2pop_B

Probab=99.95  E-value=3.8e-28  Score=193.08  Aligned_cols=78  Identities=26%  Similarity=0.584  Sum_probs=72.1

Q ss_pred             CCCCCCCHHHHHhccccCCCCCCCChHHHHHcCCcccCCCCceEEeeeCCcccCCCCCCChHHHHHhhcCCCchhhhc
Q psy3967         168 AFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLV  245 (324)
Q Consensus       168 ~~~~y~~~~~Rl~SF~~Wp~~~~~~~~~LA~AGFyytg~~D~v~Cf~Cg~~l~~W~~~DdP~~eH~~~~p~C~f~~~~  245 (324)
                      .+++|.++++|++||.+||+...+++++||+|||||+|.+|.|+||+|+++|.+|+++||||+||++|+|+|.|++.+
T Consensus        14 ~~~~~~~e~~Rl~TF~~WP~~~~~~p~~LA~AGFyytg~~D~V~Cf~C~~~l~~We~~DdP~~eH~r~~P~C~Fv~~~   91 (94)
T 2poi_A           14 KEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRKVSPNCRFINGF   91 (94)
T ss_dssp             ---CTTSHHHHHGGGTTCCTTSSSCHHHHHHTTEEECSSTTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCTTTTTT
T ss_pred             cchhhhCHHHHHHHHhcCCCCccCCHHHHHHcCCCCcCCCCEEEcccCCCEeCCCCCCCCHHHHHHHHCccCcccccc
Confidence            356799999999999999988778999999999999999999999999999999999999999999999999999764

>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4; protease-inhibitor, apoptosis-hydrolase complex; 2.40A {Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A

Probab=99.94  E-value=7.8e-28  Score=204.02  Aligned_cols=79  Identities=46%  Similarity=0.918  Sum_probs=75.4

Q ss_pred             CCCCCCCCCCHHHHHhccccCCCCCCCChHHHHHcCCcccCCCCceEEeeeCCcccCCCCCCChHHHHHhhcCCCchhh
Q psy3967         165 SPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVK  243 (324)
Q Consensus       165 ~~p~~~~y~~~~~Rl~SF~~Wp~~~~~~~~~LA~AGFyytg~~D~v~Cf~Cg~~l~~W~~~DdP~~eH~~~~p~C~f~~  243 (324)
                      ..|.++.|.++++||+||.+||+...+++++||+|||||+|.+|.|+||+|+++|.+|+++||||+||++|+|+|.|++
T Consensus        34 ~~p~~~~m~~e~~Rl~TF~~WP~~~~~~p~~LA~AGFyY~g~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~~P~C~Fv~  112 (141)
T 1i4o_C           34 IYPRNPAMYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFCCGGKLKNWEPCDRAWSEHRRHFPNCFFVL  112 (141)
T ss_pred             cCCCChhhhCHHHHHHHHhcCCCCccCCHHHHHHcCCcCcCCCCEEEeccCCCEecCCCCCCCHHHHHHHHCcCCcccC
Confidence            4577889999999999999999887789999999999999999999999999999999999999999999999999996

>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis, cytoplasm, polymorphism, zinc, zinc-FIN metal binding protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D

Probab=99.94  E-value=4.8e-28  Score=189.21  Aligned_cols=77  Identities=27%  Similarity=0.691  Sum_probs=72.5

Q ss_pred             CCCCCHHHHHhccccCCCCCCCChHHHHHcCCcccCCCCceEEeeeCCcccCCCCCCChHHHHHhhcCCCchhhhcc
Q psy3967         170 PNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVK  246 (324)
Q Consensus       170 ~~y~~~~~Rl~SF~~Wp~~~~~~~~~LA~AGFyytg~~D~v~Cf~Cg~~l~~W~~~DdP~~eH~~~~p~C~f~~~~k  246 (324)
                      .+|.+++.|++||.+||+...+++++||+|||||+|.+|.|+||+|+++|.+|+++||||+||++|+|+|.|++.++
T Consensus         7 ~~~~~e~~Rl~TF~~WP~~~~~~~~~LA~AGFyy~g~~D~v~Cf~C~~~l~~We~~DdP~~eH~~~~p~C~F~~~~~   83 (85)
T 3m1d_A            7 YDFSCELYRMSTYSTFPAGVPVSERSLARAGFYYTGVNDKVKCFCCGLMLDNWKLGDSPIQKHKQLYPSCSFIQNLV   83 (85)
T ss_dssp             CCHHHHHHHHHGGGGCCTTCSSCHHHHHHTTEEECSSTTCEEETTTCCEECSCCTTCCHHHHHHHHCTTCHHHHHHH
T ss_pred             HHhHhHHHHHHHHhcCCCCCcCCHHHHHHCCCeEeCCCCEEEeCCcCCEecCCCCCCCHHHHHHHHCccCcchhccC
Confidence            35789999999999999987789999999999999999999999999999999999999999999999999997653

>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor; apoptosis, signaling protein, zinc binding; 2.50A {Homo sapiens}

Probab=99.94  E-value=1.3e-27  Score=194.91  Aligned_cols=78  Identities=26%  Similarity=0.584  Sum_probs=72.1

Q ss_pred             CCCCCCCHHHHHhccccCCCCCCCChHHHHHcCCcccCCCCceEEeeeCCcccCCCCCCChHHHHHhhcCCCchhhhc
Q psy3967         168 AFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLV  245 (324)
Q Consensus       168 ~~~~y~~~~~Rl~SF~~Wp~~~~~~~~~LA~AGFyytg~~D~v~Cf~Cg~~l~~W~~~DdP~~eH~~~~p~C~f~~~~  245 (324)
                      ..++|.++++|++||.+||....+++++||+|||||+|.+|.|+||+|+++|.+|+++||||+||++|+|+|+|++.+
T Consensus        31 ~~~~m~~e~~RL~TF~~WP~~~~~~p~~LA~AGFyYtg~~D~V~Cf~C~~~L~~We~~DdP~~eH~r~sP~C~Fv~~~  108 (111)
T 2qra_D           31 KEEEFVEEFNRLKTFANFPSGSPVSASTLARAGFLYTGEGDTVRCFSCHAAVDRWQYGDSAVGRHRKVSPNCRFINGF  108 (111)
T ss_dssp             ---CTTSHHHHHHTTTTCCTTCSSCHHHHHHTTEEECSSTTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCTTTTTT
T ss_pred             hchhhhCHHHHHHHHhcCCCCccCCHHHHHHcCCCCcCCCCEEEcccCCCEeCCCCCCCCHHHHHHHHCccCcchhhc
Confidence            356799999999999999988778999999999999999999999999999999999999999999999999999764

>2qfa_A Baculoviral IAP repeat-containing protein 5; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens} SCOP: g.52.1.1 PDB: 1e31_A* 4a0i_A 4a0j_A* 4a0n_A* 2raw_A 3uec_A* 3ued_A* 3uef_A 3uig_A* 3uih_A 3uii_A 1f3h_A 3uee_A 3ueg_A* 3uei_A 3ueh_A* 3uik_A 3uij_A 1m4m_A 2rax_A ...

Probab=99.94  E-value=4.2e-27  Score=200.48  Aligned_cols=85  Identities=31%  Similarity=0.564  Sum_probs=79.2

Q ss_pred             CCCCCCCCCCHHHHHhccccCCCCC--CCChHHHHHcCCcccCCC---CceEEeeeCCcccCCCCCCChHHHHHhhcCCC
Q psy3967         165 SPPAFPNYATYESRLRSFDSWPISL--RLKPVTLTEAGFFYTGKA---DQTLCFRCGGGLKHWEETDDPWTEHARWFSSC  239 (324)
Q Consensus       165 ~~p~~~~y~~~~~Rl~SF~~Wp~~~--~~~~~~LA~AGFyytg~~---D~v~Cf~Cg~~l~~W~~~DdP~~eH~~~~p~C  239 (324)
                      ..|.++.|.++++|++||.+||+..  .+++++||+|||||+|.+   |.|+||+|+++|.+|+++||||+||++|+|+|
T Consensus         5 ~~p~~~~~~~~~~Rl~TF~~WP~~~~~~~~p~~LA~AGFyy~g~~~~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~~p~C   84 (142)
T 2qfa_A            5 TLPPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGC   84 (142)
T ss_dssp             CCCTTTGGGSHHHHHHTCCSCSCCSSCSSCHHHHHHTTEEECCBTTBTTCEEETTTCCEECCCCTTCCHHHHHHHHCTTC
T ss_pred             CCCCcccccCHHHHHHHHhcCCccCCcCCCHHHHHHcCCCcCCCCCCCCEEEcCCCCCEecccCCCCCHHHHHHHHCcCC
Confidence            4578889999999999999999875  368999999999999986   99999999999999999999999999999999


Q ss_pred             chhhhccchh
Q psy3967         240 PYVKLVKGQE  249 (324)
Q Consensus       240 ~f~~~~kg~~  249 (324)
                      .|++..||.+
T Consensus        85 ~F~~~~k~~~   94 (142)
T 2qfa_A           85 AFLSVKKQFE   94 (142)
T ss_dssp             GGGGCCSCGG
T ss_pred             cceecccccc
Confidence            9999999963

>1se0_A Apoptosis 1 inhibitor; apoptosis, IAP, BIR, caspase; 1.75A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1sdz_A 3sip_E

Probab=99.93  E-value=7.4e-27  Score=192.23  Aligned_cols=79  Identities=32%  Similarity=0.788  Sum_probs=72.6

Q ss_pred             CCCCCCCHHHHHhccccCCCCCCCChHHHHHcCCcccCCCCceEEeeeCCcccCCCCCCChHHHHHhhcCCCchhhhccc
Q psy3967         168 AFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKG  247 (324)
Q Consensus       168 ~~~~y~~~~~Rl~SF~~Wp~~~~~~~~~LA~AGFyytg~~D~v~Cf~Cg~~l~~W~~~DdP~~eH~~~~p~C~f~~~~kg  247 (324)
                      .+++|.++++|++||.+||+. .+++++||+|||||+|.+|+|+||+|+++|.+|+++||||+||++|+|+|.|++..+.
T Consensus         8 ~~~~~~~e~~Rl~TF~~WP~~-~~~~~~LA~AGFyy~g~~D~V~Cf~C~~~L~~We~~DdP~~eH~r~~p~C~Fv~~~~~   86 (116)
T 1se0_A            8 RMNDLNREETRLKTFTDWPLD-WLDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPEHQRWSPNCPLLRRRTT   86 (116)
T ss_dssp             --CCTTBHHHHHTTCTTCCCT-TSCHHHHHHTTEEECSSTTCEEETTTCCEEESCCTTCCHHHHHHHHCTTCTTTTTCCC
T ss_pred             hhhhhcCHHHHHHHHhhCCCC-cCCHHHHHHcCCcCcCCCCEEEecCcCCEecCCCCCCCHHHHHHHHCccCcceeeecc
Confidence            356789999999999999985 4789999999999999999999999999999999999999999999999999987654

>2qfa_A Baculoviral IAP repeat-containing protein 5; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens} SCOP: g.52.1.1 PDB: 1e31_A* 4a0i_A 4a0j_A* 4a0n_A* 2raw_A 3uec_A* 3ued_A* 3uef_A 3uig_A* 3uih_A 3uii_A 1f3h_A 3uee_A 3ueg_A* 3uei_A 3ueh_A* 3uik_A 3uij_A 1m4m_A 2rax_A ...

Probab=99.93  E-value=6.4e-28  Score=205.55  Aligned_cols=130  Identities=26%  Similarity=0.449  Sum_probs=95.3

Q ss_pred             cccCCcCHHHHHhccCCCCCCCC---cCHHHHHHcCceecCCCCCCCCCCeEeecccCceeccccCCCChhhhhcccCCC
Q psy3967          32 RKQNMTLECDRLDSFKNSWPLTY---LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPN  108 (324)
Q Consensus        32 ~~~~~~~e~~RL~SF~~~Wp~~~---~~~~~LA~aGFyy~g~~~~~~~~D~V~C~~C~~~l~~w~~~Ddp~~eH~~~sP~  108 (324)
                      ....|.++++||+||.+ ||+..   .++++||+|||||+|...+   .|.|+||+|++.|.+|+++|||+.+|++|+|+
T Consensus         8 ~~~~~~~~~~Rl~TF~~-WP~~~~~~~~p~~LA~AGFyy~g~~~~---~D~V~Cf~C~~~L~~We~~DdP~~EH~r~~p~   83 (142)
T 2qfa_A            8 PAWQPFLKDHRISTFKN-WPFLEGCACTPERMAEAGFIHCPTENE---PDLAQCFFCFKELEGWEPDDDPIEEHKKHSSG   83 (142)
T ss_dssp             TTTGGGSHHHHHHTCCS-CSCCSSCSSCHHHHHHTTEEECCBTTB---TTCEEETTTCCEECCCCTTCCHHHHHHHHCTT
T ss_pred             CcccccCHHHHHHHHhc-CCccCCcCCCHHHHHHcCCCcCCCCCC---CCEEEcCCCCCEecccCCCCCHHHHHHHHCcC
Confidence            34569999999999999 99875   6899999999999998222   59999999999999999999999999999999


Q ss_pred             CccccccccCCccCCCcCCCCCccccCCCCCcccccCCCCCCccchhhhhcccCCCCCCCCCCCCCHHHHHhccccCCCC
Q psy3967         109 CWFLRRLKKGNTESAGYDTCGSLIIEPPKSKSEVSQSCSQPNQVVSSLEKLGIHKNSPPAFPNYATYESRLRSFDSWPIS  188 (324)
Q Consensus       109 C~f~~~~~~~Nv~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~y~~~~~Rl~SF~~Wp~~  188 (324)
                      |+|+...+..+...                              .+..-.+... ...+.++.|  .++|++||.+||..
T Consensus        84 C~F~~~~k~~~~~t------------------------------~~~~l~l~~~-~~~~~~~~~--~~~r~~~F~~~p~~  130 (142)
T 2qfa_A           84 CAFLSVKKQFEELT------------------------------LGEFLKLDRE-RAKNKIAKE--TNNKKKEFEETAKK  130 (142)
T ss_dssp             CGGGGCCSCGGGCB------------------------------HHHHHHHHHH-HHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred             Ccceecccccchhh------------------------------HHHHhhhhhH-HHHHHHHHH--HHHHHHHHHHHHHH
Confidence            99998642211000                              0000000000 001223344  39999999999987


Q ss_pred             CCCChHHHHH
Q psy3967         189 LRLKPVTLTE  198 (324)
Q Consensus       189 ~~~~~~~LA~  198 (324)
                      .+..+.+||.
T Consensus       131 ~~~~~~~la~  140 (142)
T 2qfa_A          131 VRRAIEQLAA  140 (142)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHhHHHHhc
Confidence            6566777875

>3siq_A Apoptosis 1 inhibitor; DIAP1-BIR1 domain, ligase; 2.40A {Drosophila melanogaster}

Probab=99.93  E-value=2.2e-26  Score=193.10  Aligned_cols=78  Identities=32%  Similarity=0.804  Sum_probs=72.9

Q ss_pred             CCCCCCHHHHHhccccCCCCCCCChHHHHHcCCcccCCCCceEEeeeCCcccCCCCCCChHHHHHhhcCCCchhhhccc
Q psy3967         169 FPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKG  247 (324)
Q Consensus       169 ~~~y~~~~~Rl~SF~~Wp~~~~~~~~~LA~AGFyytg~~D~v~Cf~Cg~~l~~W~~~DdP~~eH~~~~p~C~f~~~~kg  247 (324)
                      ..+|.++++|++||.+||+.. +++++||+|||||+|.+|+|+||+|+++|.+|+++||||+||+||+|+|+|++..+.
T Consensus        31 ~~dy~~e~~RL~TF~~WP~~~-~~p~~LA~AGFYYtG~~D~V~Cf~C~~~L~~We~~DdP~~EH~r~sP~C~Fv~~~~~  108 (136)
T 3siq_A           31 MNDLNREETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPEHQRWSPNCPLLRRRTT  108 (136)
T ss_dssp             CCCTTBHHHHHHTTTTCCCTT-SCHHHHHHTTEEECSSTTCEEETTTCCEEECCCTTCCHHHHHHHHCTTCTTTTTCCC
T ss_pred             HHhhhCHHHHHHHHccCCCCc-CCHHHHHHCCCeEcCCCCeEEEeccCCEecCCCCCCCHHHHHHHHCcCCcceecccC
Confidence            456999999999999999874 789999999999999999999999999999999999999999999999999987654

>2poi_A Baculoviral IAP repeat-containing protein 4; zinc finger, signaling protein/apoptosis complex; 1.80A {Homo sapiens} PDB: 2pop_B

Probab=99.93  E-value=4.6e-26  Score=181.07  Aligned_cols=76  Identities=36%  Similarity=0.764  Sum_probs=70.2

Q ss_pred             cccCCcCHHHHHhccCCCCCCCC-cCHHHHHHcCceecCCCCCCCCCCeEeecccCceeccccCCCChhhhhcccCCCCc
Q psy3967          32 RKQNMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCW  110 (324)
Q Consensus        32 ~~~~~~~e~~RL~SF~~~Wp~~~-~~~~~LA~aGFyy~g~~~~~~~~D~V~C~~C~~~l~~w~~~Ddp~~eH~~~sP~C~  110 (324)
                      ...+|.+|++||+||.+ ||+.. +++++||+|||||+|.      +|+|+||+|+++|.+|+++|||+++|++|+|+|+
T Consensus        14 ~~~~~~~e~~Rl~TF~~-WP~~~~~~p~~LA~AGFyytg~------~D~V~Cf~C~~~l~~We~~DdP~~eH~r~~P~C~   86 (94)
T 2poi_A           14 KEEEFVEEFNRLKTFAN-FPSGSPVSASTLARAGFLYTGE------GDTVRCFSCHAAVDRWQYGDSAVGRHRKVSPNCR   86 (94)
T ss_dssp             ---CTTSHHHHHGGGTT-CCTTSSSCHHHHHHTTEEECSS------TTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCT
T ss_pred             cchhhhCHHHHHHHHhc-CCCCccCCHHHHHHcCCCCcCC------CCEEEcccCCCEeCCCCCCCCHHHHHHHHCccCc
Confidence            34569999999999999 99875 7999999999999999      9999999999999999999999999999999999


Q ss_pred             cccc
Q psy3967         111 FLRR  114 (324)
Q Consensus       111 f~~~  114 (324)
                      |++.
T Consensus        87 Fv~~   90 (94)
T 2poi_A           87 FING   90 (94)
T ss_dssp             TTTT
T ss_pred             cccc
Confidence            9975

>3m1d_A Baculoviral IAP repeat-containing protein 2; BIR, apoptosis, cytoplasm, polymorphism, zinc, zinc-FIN metal binding protein; 2.00A {Homo sapiens} PDB: 3m0a_D 3m0d_D

Probab=99.92  E-value=1.9e-26  Score=180.11  Aligned_cols=77  Identities=35%  Similarity=0.827  Sum_probs=71.1

Q ss_pred             cccCCcCHHHHHhccCCCCCCC-CcCHHHHHHcCceecCCCCCCCCCCeEeecccCceeccccCCCChhhhhcccCCCCc
Q psy3967          32 RKQNMTLECDRLDSFKNSWPLT-YLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCW  110 (324)
Q Consensus        32 ~~~~~~~e~~RL~SF~~~Wp~~-~~~~~~LA~aGFyy~g~~~~~~~~D~V~C~~C~~~l~~w~~~Ddp~~eH~~~sP~C~  110 (324)
                      ...+|.+|+.||+||.+ ||+. .+++++||+|||||+|.      +|.|+||+|+++|.+|+++|||+++|++++|+|+
T Consensus         5 ~~~~~~~e~~Rl~TF~~-WP~~~~~~~~~LA~AGFyy~g~------~D~v~Cf~C~~~l~~We~~DdP~~eH~~~~p~C~   77 (85)
T 3m1d_A            5 SKYDFSCELYRMSTYST-FPAGVPVSERSLARAGFYYTGV------NDKVKCFCCGLMLDNWKLGDSPIQKHKQLYPSCS   77 (85)
T ss_dssp             --CCHHHHHHHHHGGGG-CCTTCSSCHHHHHHTTEEECSS------TTCEEETTTCCEECSCCTTCCHHHHHHHHCTTCH
T ss_pred             cHHHhHhHHHHHHHHhc-CCCCCcCCHHHHHHCCCeEeCC------CCEEEeCCcCCEecCCCCCCCHHHHHHHHCccCc
Confidence            45569999999999999 9987 48999999999999999      9999999999999999999999999999999999


Q ss_pred             ccccc
Q psy3967         111 FLRRL  115 (324)
Q Consensus       111 f~~~~  115 (324)
                      |++.+
T Consensus        78 F~~~~   82 (85)
T 3m1d_A           78 FIQNL   82 (85)
T ss_dssp             HHHHH
T ss_pred             chhcc
Confidence            98754

>1i4o_C X-linked IAP, baculoviral IAP repeat-containing protein 4; protease-inhibitor, apoptosis-hydrolase complex; 2.40A {Homo sapiens} PDB: 1kmc_C 1i51_E 1i3o_E 1c9q_A

Probab=99.92  E-value=8.4e-26  Score=191.55  Aligned_cols=86  Identities=36%  Similarity=0.715  Sum_probs=80.0

Q ss_pred             cccccCCcCHHHHHhccCCCCCCCC-cCHHHHHHcCceecCCCCCCCCCCeEeecccCceeccccCCCChhhhhcccCCC
Q psy3967          30 CSRKQNMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPN  108 (324)
Q Consensus        30 ~~~~~~~~~e~~RL~SF~~~Wp~~~-~~~~~LA~aGFyy~g~~~~~~~~D~V~C~~C~~~l~~w~~~Ddp~~eH~~~sP~  108 (324)
                      +.....|.++++||+||.+ ||+.. +++++||+|||||+|.      +|.|+||+|+++|.+|+++|||+.||++|+|+
T Consensus        35 ~p~~~~m~~e~~Rl~TF~~-WP~~~~~~p~~LA~AGFyY~g~------~D~V~Cf~C~~~L~~We~~DdP~~EH~r~~P~  107 (141)
T 1i4o_C           35 YPRNPAMYSEEARLKSFQN-WPDYAHLTPRELASAGLYYTGI------GDQVQCFCCGGKLKNWEPCDRAWSEHRRHFPN  107 (141)
T ss_pred             CCCChhhhCHHHHHHHHhc-CCCCccCCHHHHHHcCCcCcCC------CCEEEeccCCCEecCCCCCCCHHHHHHHHCcC
Confidence            4555679999999999999 99875 7999999999999999      99999999999999999999999999999999


Q ss_pred             CccccccccCCccCC
Q psy3967         109 CWFLRRLKKGNTESA  123 (324)
Q Consensus       109 C~f~~~~~~~Nv~~~  123 (324)
                      |+|++.... |+|+.
T Consensus       108 C~Fv~~~~~-nvp~~  121 (141)
T 1i4o_C          108 CFFVLGRNL-NIRSE  121 (141)
T ss_pred             CcccCcccc-CCCcc
Confidence            999998888 99873

>2qra_D XIAP, baculoviral IAP repeat-containing protein 4, inhibitor; apoptosis, signaling protein, zinc binding; 2.50A {Homo sapiens}

Probab=99.92  E-value=1.1e-25  Score=183.38  Aligned_cols=78  Identities=35%  Similarity=0.756  Sum_probs=70.6

Q ss_pred             ccccCCcCHHHHHhccCCCCCCCC-cCHHHHHHcCceecCCCCCCCCCCeEeecccCceeccccCCCChhhhhcccCCCC
Q psy3967          31 SRKQNMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNC  109 (324)
Q Consensus        31 ~~~~~~~~e~~RL~SF~~~Wp~~~-~~~~~LA~aGFyy~g~~~~~~~~D~V~C~~C~~~l~~w~~~Ddp~~eH~~~sP~C  109 (324)
                      ....+|.+|++||+||.+ ||+.. +++++||+|||||+|.      +|+|+||+|+++|.+|+++|||+++|++++|+|
T Consensus        30 ~~~~~m~~e~~RL~TF~~-WP~~~~~~p~~LA~AGFyYtg~------~D~V~Cf~C~~~L~~We~~DdP~~eH~r~sP~C  102 (111)
T 2qra_D           30 NKEEEFVEEFNRLKTFAN-FPSGSPVSASTLARAGFLYTGE------GDTVRCFSCHAAVDRWQYGDSAVGRHRKVSPNC  102 (111)
T ss_dssp             ----CTTSHHHHHHTTTT-CCTTCSSCHHHHHHTTEEECSS------TTCEEETTTCCEECCCCTTCCHHHHHHHHCTTC
T ss_pred             hhchhhhCHHHHHHHHhc-CCCCccCCHHHHHHcCCCCcCC------CCEEEcccCCCEeCCCCCCCCHHHHHHHHCccC
Confidence            345569999999999999 99875 7999999999999999      999999999999999999999999999999999


Q ss_pred             cccccc
Q psy3967         110 WFLRRL  115 (324)
Q Consensus       110 ~f~~~~  115 (324)
                      +|++..
T Consensus       103 ~Fv~~~  108 (111)
T 2qra_D          103 RFINGF  108 (111)
T ss_dssp             TTTTTT
T ss_pred             cchhhc
Confidence            999753

>2vm5_A Baculoviral IAP repeat-containing protein 1; apoptosis; 1.80A {Homo sapiens}

Probab=99.91  E-value=2e-25  Score=181.13  Aligned_cols=78  Identities=47%  Similarity=0.911  Sum_probs=71.3

Q ss_pred             ccccCCcCHHHHHhccCCCCCCCC--cCHHHHHHcCceecCCCCCCCCCCeEeecccCceeccccCCCChhhhhcccCCC
Q psy3967          31 SRKQNMTLECDRLDSFKNSWPLTY--LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPN  108 (324)
Q Consensus        31 ~~~~~~~~e~~RL~SF~~~Wp~~~--~~~~~LA~aGFyy~g~~~~~~~~D~V~C~~C~~~l~~w~~~Ddp~~eH~~~sP~  108 (324)
                      .....|.++++||+||.+ ||+..  +++++||+|||||+|.      +|.|+||+|++.|.+|+++|||+.+|++|+|.
T Consensus        13 ~~~~~~~~~~~Rl~TF~~-WP~~~~~~~p~~LA~AGFyy~g~------~D~V~Cf~C~~~L~~We~~DdP~~eH~r~~p~   85 (106)
T 2vm5_A           13 GGKMRYQEEEARLASFRN-WPFYVQGISPCVLSEAGFVFTGK------QDTVQCFSCGGCLGNWEEGDDPWKEHAKWFPK   85 (106)
T ss_dssp             ---CTTSSHHHHHHGGGG-CCGGGTTSCHHHHHHTTEEECSS------TTCEEETTTCCEEESCCTTCCHHHHHHHHCTT
T ss_pred             CCchhhcCHHHHHHHHhc-CCCCcccCCHHHHHHcCCCCcCC------CCEEEccccCCEecCCCCCCCHHHHHHHHCcC
Confidence            345569999999999999 99875  7999999999999999      99999999999999999999999999999999


Q ss_pred             Ccccccc
Q psy3967         109 CWFLRRL  115 (324)
Q Consensus       109 C~f~~~~  115 (324)
                      |+|++..
T Consensus        86 C~Fv~~~   92 (106)
T 2vm5_A           86 CEFLRSK   92 (106)
T ss_dssp             CHHHHHH
T ss_pred             Ccchhhc
Confidence            9999864

>3hl5_A Baculoviral IAP repeat-containing protein 4; BIR, apoptosis, small molecule drug discovery, structur drug design, ligase, metal-binding; HET: 9JZ; 1.80A {Homo sapiens} PDB: 1nw9_A 2vsl_A

Probab=99.91  E-value=2.9e-25  Score=176.94  Aligned_cols=76  Identities=38%  Similarity=0.799  Sum_probs=71.6

Q ss_pred             cccCCcCHHHHHhccCCCCCCCCcCHHHHHHcCceecCCCCCCCCCCeEeecccCceeccccCCCChhhhhcccCCCCcc
Q psy3967          32 RKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWF  111 (324)
Q Consensus        32 ~~~~~~~e~~RL~SF~~~Wp~~~~~~~~LA~aGFyy~g~~~~~~~~D~V~C~~C~~~l~~w~~~Ddp~~eH~~~sP~C~f  111 (324)
                      ....|.++++||+||.+ ||+. +++++||+|||||+|.      +|.|+||+|++.|.+|+++|||+.+|++|+|+|+|
T Consensus         7 ~~~~m~~~~~Rl~TF~~-Wp~~-~~~~~LA~AGFyy~g~------~D~v~Cf~C~~~l~~We~~DdP~~eH~r~~p~C~f   78 (95)
T 3hl5_A            7 RNPSMADYEARIFTFGT-WIYS-VNKEQLARAGFYALGE------GDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKY   78 (95)
T ss_dssp             SCGGGCSHHHHHHTTTT-CCSS-SCHHHHHHTTEEECSS------TTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCHH
T ss_pred             CCccccCHHHHHHHHcC-CCCC-CCHHHHHhCCCeEcCC------CCeEEecCCCCCccCcCCCCCHHHHHHHHCcCCcc
Confidence            34569999999999999 9987 8999999999999998      99999999999999999999999999999999999


Q ss_pred             cccc
Q psy3967         112 LRRL  115 (324)
Q Consensus       112 ~~~~  115 (324)
                      +...
T Consensus        79 ~~~~   82 (95)
T 3hl5_A           79 LLEQ   82 (95)
T ss_dssp             HHHH
T ss_pred             hHhh
Confidence            9854

>3d9t_A Baculoviral IAP repeat-containing protein 2; zinc finger, apoptosis, cytoplasm, metal-binding, polymorphism, zinc, zinc-finger, alternative splicing, hydrolase, protease; 1.50A {Homo sapiens} SCOP: g.52.1.1 PDB: 3d9u_A 3uw4_A* 2uvl_A

Probab=99.91  E-value=4.5e-25  Score=176.48  Aligned_cols=77  Identities=42%  Similarity=0.918  Sum_probs=71.4

Q ss_pred             cccCCcCHHHHHhccCCCCCCCC-cCHHHHHHcCceecCCCCCCCCCCeEeecccCceeccccCCCChhhhhcccCCCCc
Q psy3967          32 RKQNMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCW  110 (324)
Q Consensus        32 ~~~~~~~e~~RL~SF~~~Wp~~~-~~~~~LA~aGFyy~g~~~~~~~~D~V~C~~C~~~l~~w~~~Ddp~~eH~~~sP~C~  110 (324)
                      ....|.++++||+||.+ ||+.. +++++||+|||||+|.      +|.|+||+|++.|.+|+++|||+++|++|+|+|+
T Consensus         7 ~~~~m~~~~~Rl~TF~~-Wp~~~~~~~~~LA~AGFyy~g~------~D~v~Cf~C~~~l~~We~~Ddp~~eH~r~~p~C~   79 (97)
T 3d9t_A            7 SNLSMQTHAARMRTFMY-WPSSVPVQPEQLASAGFYYVGR------NDDVKCFCCDGGLRCWESGDDPWVEHAKWFPRCE   79 (97)
T ss_dssp             -CGGGCSHHHHHHGGGG-CCTTSSSCHHHHHHTTEEECSS------TTCEEETTTCCEEECCCTTCCHHHHHHHHCTTBH
T ss_pred             cchhhhCHHHHHHHHhc-CCCcccCCHHHHHHcCCCCcCC------CCEEEecCcCCEecCCCCCCCHHHHHHHhCccCh
Confidence            34569999999999999 99875 7999999999999999      9999999999999999999999999999999999


Q ss_pred             ccccc
Q psy3967         111 FLRRL  115 (324)
Q Consensus       111 f~~~~  115 (324)
                      |+...
T Consensus        80 f~~~~   84 (97)
T 3d9t_A           80 FLIRM   84 (97)
T ss_dssp             HHHHH
T ss_pred             hhHhh
Confidence            99854

>2i3h_A Baculoviral IAP repeat-containing protein 7; zinc binding, peptide complex, apoptosis inhibition, peptidomimetic, small molecule, drug design, inhibitor/apoptosis complex; HET: BTB; 1.62A {Homo sapiens} SCOP: g.52.1.1 PDB: 2i3i_A* 3f7h_A* 3f7i_A* 3gt9_A* 3gta_A* 1tw6_A* 3uw5_A* 3f7g_A* 1oxn_A* 1oxq_A* 1oy7_A*

Probab=99.90  E-value=8.1e-25  Score=183.44  Aligned_cols=79  Identities=44%  Similarity=0.831  Sum_probs=73.6

Q ss_pred             cccccCCcCHHHHHhccCCCCCCC-CcCHHHHHHcCceecCCCCCCCCCCeEeecccCceeccccCCCChhhhhcccCCC
Q psy3967          30 CSRKQNMTLECDRLDSFKNSWPLT-YLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPN  108 (324)
Q Consensus        30 ~~~~~~~~~e~~RL~SF~~~Wp~~-~~~~~~LA~aGFyy~g~~~~~~~~D~V~C~~C~~~l~~w~~~Ddp~~eH~~~sP~  108 (324)
                      ......|.++++||+||.+ ||.. .+++++||+|||||+|.      +|.|+||+|++.|.+|+++|||+.+|++|+|+
T Consensus        39 ~~~~~~m~~e~~RL~SF~~-WP~~~~~~pe~LA~AGFYYtg~------~D~V~Cf~C~~~L~~We~~DDP~~EH~r~~P~  111 (133)
T 2i3h_A           39 GPAFPGMGSEELRLASFYD-WPLTAEVPPELLAAAGFFHTGH------QDKVRCFFCYGGLQSWKRGDDPWTEHAKWFPG  111 (133)
T ss_dssp             CCSCGGGCCHHHHHHTTTT-CSCTTTSCHHHHHHTTEEECSS------TTCEEETTTCCEEECCCTTCCHHHHHHHHCTT
T ss_pred             CCCchhhhCHHHHHHHHhc-CCCCcCCCHHHHHHcCCCCcCC------CCEEEecccCCEeCCCCCCCCHHHHHHHHCcC
Confidence            4566779999999999999 9986 47999999999999999      99999999999999999999999999999999


Q ss_pred             Ccccccc
Q psy3967         109 CWFLRRL  115 (324)
Q Consensus       109 C~f~~~~  115 (324)
                      |+|+...
T Consensus       112 C~Fv~~~  118 (133)
T 2i3h_A          112 CQFLLRS  118 (133)
T ss_dssp             CHHHHHH
T ss_pred             Cceehhc
Confidence            9998754

>1jd5_A DIAP1, apoptosis 1 inhibitor; IAP, caspase activation; 1.90A {Drosophila melanogaster} SCOP: g.52.1.1 PDB: 1jd4_A 1jd6_A 1q4q_A

Probab=99.90  E-value=8.4e-25  Score=181.65  Aligned_cols=78  Identities=32%  Similarity=0.789  Sum_probs=72.6

Q ss_pred             ccccCCcCHHHHHhccCCCCCCCC-cCHHHHHHcCceecCCCCCCCCCCeEeecccCceeccccCCCChhhhhcccCCCC
Q psy3967          31 SRKQNMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNC  109 (324)
Q Consensus        31 ~~~~~~~~e~~RL~SF~~~Wp~~~-~~~~~LA~aGFyy~g~~~~~~~~D~V~C~~C~~~l~~w~~~Ddp~~eH~~~sP~C  109 (324)
                      .....|.++++||+||.+ ||+.. .++++||+|||||+|.      +|.|+||+|++.|.+|+++|||+.+|++|+|+|
T Consensus        18 p~~p~~~~e~~Rl~TF~~-WP~~~~~~p~~LA~AGFyYtg~------~D~V~Cf~C~~~L~~We~~DdP~~EH~r~~P~C   90 (124)
T 1jd5_A           18 PQYPEYAIETARLRTFEA-WPRNLKQKPHQLAEAGFFYTGV------GDRVRCFSCGGGLMDWNDNDEPWEQHALWLSQC   90 (124)
T ss_dssp             CSCGGGCSHHHHHHHGGG-CCTTCSSCHHHHHHTTEEECSS------TTCEEETTTCCEEECCCTTCCHHHHHHHHCTTC
T ss_pred             CCChhhhCHHHHHHHHhh-CCCCccCCHHHHHHcCCCCcCC------CCEEEecCCCCEecCCCCCCCHHHHHHHHCcCC
Confidence            345579999999999999 99874 7999999999999999      999999999999999999999999999999999


Q ss_pred             cccccc
Q psy3967         110 WFLRRL  115 (324)
Q Consensus       110 ~f~~~~  115 (324)
                      +|++..
T Consensus        91 ~Fv~~~   96 (124)
T 1jd5_A           91 RFVKLM   96 (124)
T ss_dssp             HHHHHH
T ss_pred             ceeecc
Confidence            999864

>1g73_C Inhibitors of apoptosis-like protein ILP; helix bundle, zinc-binding domain, apoptosis/apoptosis inhibitor complex; 2.00A {Homo sapiens} SCOP: g.52.1.1 PDB: 3cm2_D* 3clx_D* 3cm7_C* 1f9x_A 1g3f_A 1tfq_A* 1tft_A* 3eyl_A* 3g76_A* 2jk7_A* 2opz_A 2opy_A* 1xb0_A 1xb1_A

Probab=99.90  E-value=1e-24  Score=180.65  Aligned_cols=77  Identities=38%  Similarity=0.791  Sum_probs=72.4

Q ss_pred             ccccCCcCHHHHHhccCCCCCCCCcCHHHHHHcCceecCCCCCCCCCCeEeecccCceeccccCCCChhhhhcccCCCCc
Q psy3967          31 SRKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCW  110 (324)
Q Consensus        31 ~~~~~~~~e~~RL~SF~~~Wp~~~~~~~~LA~aGFyy~g~~~~~~~~D~V~C~~C~~~l~~w~~~Ddp~~eH~~~sP~C~  110 (324)
                      .....|.++++||+||.+ ||+. +++++||+|||||+|.      +|.|+||+|++.|.+|+++|||+.+|++|+|+|+
T Consensus        20 p~~~~m~~~~~Rl~TF~~-Wp~~-~~p~~LA~AGFyy~g~------~D~V~Cf~C~~~L~~We~~DdP~~eH~r~~P~C~   91 (121)
T 1g73_C           20 PRNPSMADYEARIFTFGT-WIYS-VNKEQLARAGFYALGE------GDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCK   91 (121)
T ss_dssp             CSCGGGCSHHHHHHTTTT-CCSS-SCHHHHHHTTEEECSS------TTCEEETTTCCEEESCCTTCCHHHHHHHHCTTCH
T ss_pred             CCChhhhCHHHHHHHHcc-CCCC-CCHHHHHHcCCCCcCC------CCEEEcCcCCCCcCCCCCCCCHHHHHHHHCcCCc
Confidence            355579999999999999 9998 8999999999999998      9999999999999999999999999999999999


Q ss_pred             ccccc
Q psy3967         111 FLRRL  115 (324)
Q Consensus       111 f~~~~  115 (324)
                      |+...
T Consensus        92 Fv~~~   96 (121)
T 1g73_C           92 YLLEQ   96 (121)
T ss_dssp             HHHHH
T ss_pred             chhhc
Confidence            99854

>3mup_A Baculoviral IAP repeat-containing protein 2; zinc-finger motif, apoptosis inhibitor; HET: SMK; 2.60A {Homo sapiens} SCOP: g.52.1.1 PDB: 3oz1_A* 4eb9_A*

Probab=99.90  E-value=1.7e-24  Score=179.53  Aligned_cols=77  Identities=42%  Similarity=0.918  Sum_probs=72.3

Q ss_pred             cccCCcCHHHHHhccCCCCCCCC-cCHHHHHHcCceecCCCCCCCCCCeEeecccCceeccccCCCChhhhhcccCCCCc
Q psy3967          32 RKQNMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCW  110 (324)
Q Consensus        32 ~~~~~~~e~~RL~SF~~~Wp~~~-~~~~~LA~aGFyy~g~~~~~~~~D~V~C~~C~~~l~~w~~~Ddp~~eH~~~sP~C~  110 (324)
                      ....|.++++||+||.+ ||+.. +++++||+|||||+|.      +|+|+||+|++.|.+|+++|||+.+|++|+|+|+
T Consensus        13 ~~~~m~s~~~Rl~TF~~-WP~~~~~~p~~LA~AGFyy~g~------~D~V~Cf~C~~~L~~We~~DdP~~EH~r~~P~C~   85 (122)
T 3mup_A           13 SNLSMQTHAARMRTFMY-WPSSVPVQPEQLASAGFYYVGR------NDDVKCFCCDGGLRCWESGDDPWVEHAKWFPRCE   85 (122)
T ss_dssp             SCGGGCSHHHHHHGGGG-CCTTCSSCHHHHHHTTEEECSS------TTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCH
T ss_pred             CCccccCHHHHHHHHhc-CCCcccCCHHHHHHCCCeEeCC------CCeEEecCcCCEecCCCCCCCHHHHHHHHCcCCc
Confidence            45569999999999999 99874 7999999999999999      9999999999999999999999999999999999


Q ss_pred             ccccc
Q psy3967         111 FLRRL  115 (324)
Q Consensus       111 f~~~~  115 (324)
                      |+...
T Consensus        86 Fv~~~   90 (122)
T 3mup_A           86 FLIRM   90 (122)
T ss_dssp             HHHHH
T ss_pred             chhhc
Confidence            99854

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=99.82  E-value=3.8e-21  Score=185.48  Aligned_cols=266  Identities=25%  Similarity=0.455  Sum_probs=150.1

Q ss_pred             CCcCHHHHHhccCCCCCCCC-cCHHHHHHcCceecCCCCCCCCCCeEeecccCceeccccCCCChhhhhcccCCCCcccc
Q psy3967          35 NMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLR  113 (324)
Q Consensus        35 ~~~~e~~RL~SF~~~Wp~~~-~~~~~LA~aGFyy~g~~~~~~~~D~V~C~~C~~~l~~w~~~Ddp~~eH~~~sP~C~f~~  113 (324)
                      .|.++++||+||.+ ||+.. +++++||+|||||+|.      +|.|+||+|++.|.+|+++||||.+|++|+|+|+|+.
T Consensus         2 ~m~~~~~Rl~tF~~-WP~~~~~~~~~lA~AGFyy~g~------~D~v~Cf~C~~~l~~We~~DdP~~eH~~~~p~C~f~~   74 (345)
T 3t6p_A            2 SMQTHAARMRTFMY-WPSSVPVQPEQLASAGFYYVGR------NDDVKCFSCDGGLRCWESGDDPWVEHAKWFPRCEFLI   74 (345)
T ss_dssp             TTSSHHHHHHHGGG-SCTTCSSCHHHHHHTTEEECSS------TTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCHHHH
T ss_pred             CCccHHHHHHHHhh-CCCcccCCHHHHHhCCCeecCC------CCeEEecCCCCCccCCCCCCCHHHHHHHhCCCCccHH
Confidence            58999999999999 99875 7999999999999999      9999999999999999999999999999999999987


Q ss_pred             ccccCC----ccCCCcCCCCCc-ccc---CCCCCcccccCCCCC---Cccc-hhhhhccc-------------CCCCCCC
Q psy3967         114 RLKKGN----TESAGYDTCGSL-IIE---PPKSKSEVSQSCSQP---NQVV-SSLEKLGI-------------HKNSPPA  168 (324)
Q Consensus       114 ~~~~~N----v~~~~~d~~~~~-~~~---~~~~~~~~~~~~~~~---~~~~-~~~~~~~~-------------~~~~~p~  168 (324)
                      ..+...    +-. .+..-... +..   ..+.....  .....   .++. ...-..|.             .. ... 
T Consensus        75 ~~kg~~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~v~~~l~mGf~~~~v~~~~~~~~~~-~g~-  149 (345)
T 3t6p_A           75 RMKGQEFVDEIQG-RYPHLLEQLLSTPPIIHYGPGES--SSEDAVMMNTPVVKSALEMGFNRDLVKQTVQSKILT-TGE-  149 (345)
T ss_dssp             HHHCHHHHHHHHH-HSTTHHHHHHHC---------------CCCGGGCSHHHHHHHHTTCCHHHHHHHHHHHHHH-HSS-
T ss_pred             HhccHHHHHHHHH-hCcccccccccCccccccCCccc--hhhhhhhhcCHHHHHHHHhcccHHHHHHHHHHHHHh-cCC-
Confidence            542110    000 00000000 000   00000000  00000   0000 00000000             00 000 


Q ss_pred             CCCCCCHHHHHh----------------ccccCCCCCCCChHHHHHcCCcccCCCCceEEeeeCCcccCCCCCCChHHHH
Q psy3967         169 FPNYATYESRLR----------------SFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEH  232 (324)
Q Consensus       169 ~~~y~~~~~Rl~----------------SF~~Wp~~~~~~~~~LA~AGFyytg~~D~v~Cf~Cg~~l~~W~~~DdP~~eH  232 (324)
                        .|.+.+.=+.                .+..+- ...++..++++|+||..        +.|...+.+|...+++|.++
T Consensus       150 --~~~~~~~lv~~~l~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~ra~l~~~--------~~~v~pild~lle~~vis~~  218 (345)
T 3t6p_A          150 --NYKTVNDIVSALLNAEDEKREEEKEKQAEEMA-SDDLSLIRKNRMALFQQ--------LTCVLPILDNLLKANVINKQ  218 (345)
T ss_dssp             --CCCSHHHHHHHHHHHHHHHHHHHHHHHHSCCC-CHHHHHHHHTHHHHHHH--------CCCCHHHHHHHHHTTSSCHH
T ss_pred             --CcCCHHHHHHHHHhcccccchhhhhhhhcccc-cccchHHHHHHHHHhhc--------cccccccccccccccccchh
Confidence              1122211111                122221 01124556778888776        45788888999999999999


Q ss_pred             HhhcCCCchhhhccchhHHHhhhccccccCCC-----CCcCCc--cccc-cccCCCCCCCCC---CCCCCCCCCCccccc
Q psy3967         233 ARWFSSCPYVKLVKGQEFINQVIGHKEVANDP-----ITLQPL--HYIA-ETSTAVKPTACS---QDDKRPEPNSDGRLC  301 (324)
Q Consensus       233 ~~~~p~C~f~~~~kg~~~i~~v~~~~~~~~~~-----~~~~~~--~~~~-~~~~~~~~t~~~---~~~~~~~~~~~~~~C  301 (324)
                      .++...+.+.....+.+++..++.........     ....+.  ..+. .......++...   ..++..+.+.++..|
T Consensus       219 e~dv~~~~~~~~~~~r~li~~i~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~C  298 (345)
T 3t6p_A          219 EHDIIKQKTQIPLQARELIDTILVKGNAAANIFKNSLKEIDSTLYKNLFVDKNMKYIPTEDVSGLSLEEQLRRLQEERTC  298 (345)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCHHHHHHHHTSCCCCCCCSSCGGGSCHHHHHHHHHTTCBC
T ss_pred             hhhhhhhHhhhHHHHHHHHHHHHHhhhhhHHHHHHHHhccchhhhhhhccccccccCCccccccccHHHHHHhCcCCCCC
Confidence            99999998877777777776665421100000     000000  0000 000000000000   001112234456889


Q ss_pred             cccccccccEEEecCCceeecc
Q psy3967         302 KICYQREMGVVFLPCGHIVACV  323 (324)
Q Consensus       302 ~iC~~~~~~~~~~PCgH~~~C~  323 (324)
                      .||++...+.+++||||.+.|.
T Consensus       299 ~IC~~~~~~~v~lpCgH~~fC~  320 (345)
T 3t6p_A          299 KVCMDKEVSVVFIPCGHLVVCQ  320 (345)
T ss_dssp             TTTSSSBCCEEEETTCCEEECT
T ss_pred             CccCCcCCceEEcCCCChhHhH
Confidence            9999999999999999997774

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.32  E-value=2.2e-07  Score=68.70  Aligned_cols=28  Identities=29%  Similarity=0.756  Sum_probs=25.2

Q ss_pred             CccccccccccccccEEEecCCceeecc
Q psy3967         296 SDGRLCKICYQREMGVVFLPCGHIVACV  323 (324)
Q Consensus       296 ~~~~~C~iC~~~~~~~~~~PCgH~~~C~  323 (324)
                      .+..+|+||+++.++++|+||||++.|.
T Consensus        13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~   40 (68)
T 2ea5_A           13 ENSKDCVVCQNGTVNWVLLPCRHTCLCD   40 (68)
T ss_dssp             CCSSCCSSSSSSCCCCEETTTTBCCSCT
T ss_pred             CCCCCCCCcCcCCCCEEEECCCChhhhH
Confidence            3567899999999999999999998875

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=97.86  E-value=4.3e-06  Score=60.81  Aligned_cols=27  Identities=30%  Similarity=0.599  Sum_probs=24.1

Q ss_pred             ccccccccccccccEEEe--cCCceeecc
Q psy3967         297 DGRLCKICYQREMGVVFL--PCGHIVACV  323 (324)
Q Consensus       297 ~~~~C~iC~~~~~~~~~~--PCgH~~~C~  323 (324)
                      ++..|+||+++.++++|+  ||||++.|.
T Consensus         7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~   35 (64)
T 2vje_A            7 AIEPCVICQGRPKNGCIVHGKTGHLMACF   35 (64)
T ss_dssp             GGSCCTTTSSSCSCEEEEETTEEEEEECH
T ss_pred             CcCCCCcCCCCCCCEEEECCCCCChhhHH
Confidence            467899999999999999  999998763

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=97.83  E-value=5.4e-06  Score=60.11  Aligned_cols=27  Identities=26%  Similarity=0.583  Sum_probs=23.6

Q ss_pred             ccccccccccccccEEEe--cCCceeecc
Q psy3967         297 DGRLCKICYQREMGVVFL--PCGHIVACV  323 (324)
Q Consensus       297 ~~~~C~iC~~~~~~~~~~--PCgH~~~C~  323 (324)
                      ....|+||+++.++.+++  ||||++.|.
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~   34 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCF   34 (63)
T ss_dssp             GGSBCTTTSSSBSCEEEEETTEEEEEECH
T ss_pred             cCCCCcccCCcCCCeEEEecCCCCHhHHH
Confidence            356899999999999888  999998774

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=97.79  E-value=5.5e-06  Score=62.85  Aligned_cols=29  Identities=38%  Similarity=0.970  Sum_probs=25.1

Q ss_pred             CCccccccccccccccEEEecCCceeecc
Q psy3967         295 NSDGRLCKICYQREMGVVFLPCGHIVACV  323 (324)
Q Consensus       295 ~~~~~~C~iC~~~~~~~~~~PCgH~~~C~  323 (324)
                      +.+...|.||+++.++++|+||||++.|.
T Consensus        15 l~~~~~C~IC~~~~~~~v~~pCgH~~~C~   43 (79)
T 2yho_A           15 LKEAMLCMVCCEEEINSTFCPCGHTVCCE   43 (79)
T ss_dssp             HHHHTBCTTTSSSBCCEEEETTCBCCBCH
T ss_pred             CCCCCEeEEeCcccCcEEEECCCCHHHHH
Confidence            44567899999999999999999997663

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=97.51  E-value=2.6e-05  Score=58.10  Aligned_cols=29  Identities=48%  Similarity=1.250  Sum_probs=25.0

Q ss_pred             CCccccccccccccccEEEecCCceeecc
Q psy3967         295 NSDGRLCKICYQREMGVVFLPCGHIVACV  323 (324)
Q Consensus       295 ~~~~~~C~iC~~~~~~~~~~PCgH~~~C~  323 (324)
                      ..+...|.||++..++.+++||||.+.|.
T Consensus        21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~   49 (74)
T 4ic3_A           21 LQEEKLCKICMDRNIAIVFVPCGHLVTCK   49 (74)
T ss_dssp             HHHHTBCTTTSSSBCCEEEETTCCBCCCH
T ss_pred             CccCCCCCCCCCCCCCEEEcCCCChhHHH
Confidence            44567899999999999999999996663

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.32  E-value=2.2e-05  Score=58.54  Aligned_cols=29  Identities=48%  Similarity=1.250  Sum_probs=24.8

Q ss_pred             CCccccccccccccccEEEecCCceeecc
Q psy3967         295 NSDGRLCKICYQREMGVVFLPCGHIVACV  323 (324)
Q Consensus       295 ~~~~~~C~iC~~~~~~~~~~PCgH~~~C~  323 (324)
                      +.+..+|.||++..++.+++||||.+.|.
T Consensus        22 ~~~~~~C~IC~~~~~~~~~~pCgH~~~C~   50 (75)
T 2ecg_A           22 LQEEKLCKICMDRNIAIVFVPCGHLVTCK   50 (75)
T ss_dssp             HHHHHSCSSSCSSCCCBCCSSSCCCCBCH
T ss_pred             CCCCCCCCcCCCCCCCEEEecCCCHHHHH
Confidence            34567899999999999999999996653

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.01  E-value=0.0062  Score=44.22  Aligned_cols=26  Identities=35%  Similarity=0.612  Sum_probs=22.7

Q ss_pred             CccccccccccccccEEEecCCceee
Q psy3967         296 SDGRLCKICYQREMGVVFLPCGHIVA  321 (324)
Q Consensus       296 ~~~~~C~iC~~~~~~~~~~PCgH~~~  321 (324)
                      .+...|.||++.-.+.+++||||+.+
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~CgH~fC   38 (71)
T 2d8t_A           13 LTVPECAICLQTCVHPVSLPCKHVFC   38 (71)
T ss_dssp             SSCCBCSSSSSBCSSEEEETTTEEEE
T ss_pred             CCCCCCccCCcccCCCEEccCCCHHH
Confidence            34678999999999999999999854

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.99  E-value=0.0058  Score=44.29  Aligned_cols=28  Identities=25%  Similarity=0.509  Sum_probs=24.3

Q ss_pred             CCCccccccccccccccEEEecCCceee
Q psy3967         294 PNSDGRLCKICYQREMGVVFLPCGHIVA  321 (324)
Q Consensus       294 ~~~~~~~C~iC~~~~~~~~~~PCgH~~~  321 (324)
                      ...+...|.||++.-.+.+++||||..+
T Consensus        16 ~~~~~~~C~IC~~~~~~~~~~~CgH~fC   43 (73)
T 2ysl_A           16 KLQEEVICPICLDILQKPVTIDCGHNFC   43 (73)
T ss_dssp             CCCCCCBCTTTCSBCSSEEECTTCCEEE
T ss_pred             hCccCCEeccCCcccCCeEEcCCCChhh
Confidence            4556789999999999999999999854

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.94  E-value=0.0051  Score=43.48  Aligned_cols=28  Identities=25%  Similarity=0.509  Sum_probs=24.3

Q ss_pred             CCCccccccccccccccEEEecCCceee
Q psy3967         294 PNSDGRLCKICYQREMGVVFLPCGHIVA  321 (324)
Q Consensus       294 ~~~~~~~C~iC~~~~~~~~~~PCgH~~~  321 (324)
                      ...+...|.||++.-.+.+.+||||..+
T Consensus        16 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC   43 (63)
T 2ysj_A           16 KLQEEVICPICLDILQKPVTIDCGHNFC   43 (63)
T ss_dssp             CCCCCCBCTTTCSBCSSCEECTTSSEEC
T ss_pred             hCccCCCCCcCCchhCCeEEeCCCCcch
Confidence            4556789999999999999999999854

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.85  E-value=0.0063  Score=43.85  Aligned_cols=26  Identities=31%  Similarity=0.704  Sum_probs=22.1

Q ss_pred             CCccccccccccccccEEEecCCceee
Q psy3967         295 NSDGRLCKICYQREMGVVFLPCGHIVA  321 (324)
Q Consensus       295 ~~~~~~C~iC~~~~~~~~~~PCgH~~~  321 (324)
                      ..+...|.||++...+ +++||||..+
T Consensus        12 ~~~~~~C~IC~~~~~~-~~~~CgH~fc   37 (70)
T 2ecn_A           12 LTDEEECCICMDGRAD-LILPCAHSFC   37 (70)
T ss_dssp             CCCCCCCSSSCCSCCS-EEETTTEEEC
T ss_pred             CCCCCCCeeCCcCccC-cccCCCCccc
Confidence            4456789999999999 9999999853

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.51  E-value=0.013  Score=43.80  Aligned_cols=28  Identities=25%  Similarity=0.505  Sum_probs=23.6

Q ss_pred             CCCcccccccccccccc----EEEecCCceee
Q psy3967         294 PNSDGRLCKICYQREMG----VVFLPCGHIVA  321 (324)
Q Consensus       294 ~~~~~~~C~iC~~~~~~----~~~~PCgH~~~  321 (324)
                      ...+...|.||++.-.+    .+.+||||..+
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC   42 (88)
T 2ct2_A           11 ALREVLECPICMESFTEEQLRPKLLHCGHTIC   42 (88)
T ss_dssp             CCCSCCBCTTTCCBCCTTSSCEEECSSSCEEE
T ss_pred             hccCCCCCccCCccccccCCCeEECCCCChhh
Confidence            34567889999999888    99999999865

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.42  E-value=0.013  Score=43.54  Aligned_cols=26  Identities=27%  Similarity=0.323  Sum_probs=22.8

Q ss_pred             CccccccccccccccEEEecCCceee
Q psy3967         296 SDGRLCKICYQREMGVVFLPCGHIVA  321 (324)
Q Consensus       296 ~~~~~C~iC~~~~~~~~~~PCgH~~~  321 (324)
                      .+...|.||++.-.+.+++||||..+
T Consensus        13 ~~~~~C~IC~~~~~~p~~~~CgH~fC   38 (81)
T 2csy_A           13 EIPFRCFICRQAFQNPVVTKCRHYFC   38 (81)
T ss_dssp             CCCSBCSSSCSBCCSEEECTTSCEEE
T ss_pred             CCCCCCcCCCchhcCeeEccCCCHhH
Confidence            44678999999999999999999864

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.32  E-value=0.0059  Score=42.11  Aligned_cols=28  Identities=21%  Similarity=0.451  Sum_probs=23.6

Q ss_pred             CCCccccccccccccccEEEecCCceee
Q psy3967         294 PNSDGRLCKICYQREMGVVFLPCGHIVA  321 (324)
Q Consensus       294 ~~~~~~~C~iC~~~~~~~~~~PCgH~~~  321 (324)
                      ...+...|.||++.-.+.+.+||||..+
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC   38 (58)
T 2ecj_A           11 NLQVEASCSVCLEYLKEPVIIECGHNFC   38 (58)
T ss_dssp             CSCCCCBCSSSCCBCSSCCCCSSCCCCC
T ss_pred             ccccCCCCccCCcccCccEeCCCCCccC
Confidence            3456778999999999999999999853

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.00  E-value=0.013  Score=41.72  Aligned_cols=27  Identities=30%  Similarity=0.582  Sum_probs=21.6

Q ss_pred             CCccccccccccccccE-------EEecCCceee
Q psy3967         295 NSDGRLCKICYQREMGV-------VFLPCGHIVA  321 (324)
Q Consensus       295 ~~~~~~C~iC~~~~~~~-------~~~PCgH~~~  321 (324)
                      ..+...|.||++.-.+.       +++||||..+
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc   45 (69)
T 2ea6_A           12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFC   45 (69)
T ss_dssp             TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEE
T ss_pred             CCCCCCCcccCccccccccccCCeEeCCCCChhc
Confidence            44577899999987664       9999999754

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=94.82  E-value=0.02  Score=41.95  Aligned_cols=28  Identities=36%  Similarity=0.721  Sum_probs=24.4

Q ss_pred             CCCccccccccccccccEEEec-CCceee
Q psy3967         294 PNSDGRLCKICYQREMGVVFLP-CGHIVA  321 (324)
Q Consensus       294 ~~~~~~~C~iC~~~~~~~~~~P-CgH~~~  321 (324)
                      ...+...|.||++.-.+-+.+| |||..+
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC   39 (74)
T 2yur_A           11 PIPDELLCLICKDIMTDAVVIPCCGNSYC   39 (74)
T ss_dssp             CSCGGGSCSSSCCCCTTCEECSSSCCEEC
T ss_pred             cCCCCCCCcCCChHHhCCeEcCCCCCHHH
Confidence            4567889999999999999999 999754

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.77  E-value=0.02  Score=41.53  Aligned_cols=28  Identities=21%  Similarity=0.361  Sum_probs=23.6

Q ss_pred             CCCccccccccccccccEEEe-cCCceee
Q psy3967         294 PNSDGRLCKICYQREMGVVFL-PCGHIVA  321 (324)
Q Consensus       294 ~~~~~~~C~iC~~~~~~~~~~-PCgH~~~  321 (324)
                      ...+...|.||++.-.+.+.+ ||||..+
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC   39 (72)
T 2djb_A           11 ELTPYILCSICKGYLIDATTITECLHTFC   39 (72)
T ss_dssp             CCCGGGSCTTTSSCCSSCEECSSSCCEEC
T ss_pred             hcCCCCCCCCCChHHHCcCEECCCCCHHH
Confidence            456688999999999988887 9999764

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=94.67  E-value=0.018  Score=42.57  Aligned_cols=28  Identities=21%  Similarity=0.335  Sum_probs=23.8

Q ss_pred             CCCccccccccccccccEEEecCCceee
Q psy3967         294 PNSDGRLCKICYQREMGVVFLPCGHIVA  321 (324)
Q Consensus       294 ~~~~~~~C~iC~~~~~~~~~~PCgH~~~  321 (324)
                      ...+...|.||++.-.+-+.+||||..+
T Consensus        15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC   42 (85)
T 2ecw_A           15 MIKEEVTCPICLELLKEPVSADCNHSFC   42 (85)
T ss_dssp             CCCTTTSCTTTCSCCSSCEECTTSCCBC
T ss_pred             hCccCCCCcCCChhhCcceeCCCCCHHH
Confidence            3456788999999999999999999754

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.46  E-value=0.014  Score=43.11  Aligned_cols=28  Identities=25%  Similarity=0.483  Sum_probs=23.8

Q ss_pred             CCCccccccccccccccEEEecCCceee
Q psy3967         294 PNSDGRLCKICYQREMGVVFLPCGHIVA  321 (324)
Q Consensus       294 ~~~~~~~C~iC~~~~~~~~~~PCgH~~~  321 (324)
                      ...+...|.||++.-.+.+.+||||..+
T Consensus        15 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC   42 (85)
T 2ecv_A           15 NVKEEVTCPICLELLTQPLSLDCGHSFC   42 (85)
T ss_dssp             CCCCCCCCTTTCSCCSSCBCCSSSCCBC
T ss_pred             HccCCCCCCCCCcccCCceeCCCCCHHH
Confidence            3456788999999999999999999754

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=94.36  E-value=0.011  Score=43.29  Aligned_cols=28  Identities=25%  Similarity=0.507  Sum_probs=23.5

Q ss_pred             CCCccccccccccccccEEEecCCceee
Q psy3967         294 PNSDGRLCKICYQREMGVVFLPCGHIVA  321 (324)
Q Consensus       294 ~~~~~~~C~iC~~~~~~~~~~PCgH~~~  321 (324)
                      ...+...|.||++.-.+.+.+||||..+
T Consensus         8 ~~~~~~~C~IC~~~~~~p~~l~CgH~fC   35 (79)
T 2egp_A            8 NVQEEVTCPICLELLTEPLSLDCGHSLC   35 (79)
T ss_dssp             CCCCCCEETTTTEECSSCCCCSSSCCCC
T ss_pred             hcccCCCCcCCCcccCCeeECCCCCHHH
Confidence            3456788999999999999999999754

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=94.28  E-value=0.0096  Score=41.44  Aligned_cols=25  Identities=24%  Similarity=0.453  Sum_probs=21.9

Q ss_pred             ccccccccccccccEEEecCCceee
Q psy3967         297 DGRLCKICYQREMGVVFLPCGHIVA  321 (324)
Q Consensus       297 ~~~~C~iC~~~~~~~~~~PCgH~~~  321 (324)
                      +...|.||++.-.+-+.+||||..+
T Consensus         5 ~~~~C~IC~~~~~~p~~l~CgH~fC   29 (56)
T 1bor_A            5 QFLRCQQCQAEAKCPKLLPCLHTLC   29 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCCSB
T ss_pred             cCCCceEeCCccCCeEEcCCCCccc
Confidence            4678999999999999999999754

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=94.19  E-value=0.04  Score=39.37  Aligned_cols=26  Identities=31%  Similarity=0.591  Sum_probs=20.0

Q ss_pred             Cccccccccccc---cccEEEecCCceee
Q psy3967         296 SDGRLCKICYQR---EMGVVFLPCGHIVA  321 (324)
Q Consensus       296 ~~~~~C~iC~~~---~~~~~~~PCgH~~~  321 (324)
                      .+...|.||++.   ...++.+||||+.+
T Consensus        12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc   40 (69)
T 2kiz_A           12 DTEEKCTICLSILEEGEDVRRLPCMHLFH   40 (69)
T ss_dssp             TCCCSBTTTTBCCCSSSCEEECTTSCEEE
T ss_pred             CCCCCCeeCCccccCCCcEEEeCCCCHHH
Confidence            346789999654   46789999999854

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=94.07  E-value=0.028  Score=38.17  Aligned_cols=24  Identities=33%  Similarity=0.780  Sum_probs=19.6

Q ss_pred             ccccccccccccc----EEEecCCceee
Q psy3967         298 GRLCKICYQREMG----VVFLPCGHIVA  321 (324)
Q Consensus       298 ~~~C~iC~~~~~~----~~~~PCgH~~~  321 (324)
                      ...|.||++.-.+    ++++||||+..
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~~CgH~fc   32 (55)
T 2ecm_A            5 SSGCPICLEDIHTSRVVAHVLPCGHLLH   32 (55)
T ss_dssp             CCSCTTTCCCCCTTTSCEEECTTSCEEE
T ss_pred             CCcCcccChhhcCCCcCeEecCCCCccc
Confidence            4679999987655    99999999754

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=94.05  E-value=0.022  Score=40.58  Aligned_cols=24  Identities=29%  Similarity=0.664  Sum_probs=20.6

Q ss_pred             ccccccccccccc-EEEecCCceee
Q psy3967         298 GRLCKICYQREMG-VVFLPCGHIVA  321 (324)
Q Consensus       298 ~~~C~iC~~~~~~-~~~~PCgH~~~  321 (324)
                      ...|.||++.-.+ ++++||||..+
T Consensus         5 ~~~C~IC~~~~~~~~~~~~C~H~fc   29 (68)
T 1chc_A            5 AERCPICLEDPSNYSMALPCLHAFC   29 (68)
T ss_dssp             CCCCSSCCSCCCSCEEETTTTEEES
T ss_pred             CCCCeeCCccccCCcEecCCCCeeH
Confidence            5679999999888 69999999843

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=94.00  E-value=0.021  Score=47.01  Aligned_cols=25  Identities=28%  Similarity=0.527  Sum_probs=22.0

Q ss_pred             ccccccccccccccEEEecCCceee
Q psy3967         297 DGRLCKICYQREMGVVFLPCGHIVA  321 (324)
Q Consensus       297 ~~~~C~iC~~~~~~~~~~PCgH~~~  321 (324)
                      ++..|.||++.-.+.|.+||||..+
T Consensus        52 ~~~~C~iC~~~~~~~~~~~CgH~fc   76 (138)
T 4ayc_A           52 NELQCIICSEYFIEAVTLNCAHSFC   76 (138)
T ss_dssp             HHSBCTTTCSBCSSEEEETTSCEEE
T ss_pred             ccCCCcccCcccCCceECCCCCCcc
Confidence            4567999999999999999999765

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=93.67  E-value=0.06  Score=39.37  Aligned_cols=27  Identities=30%  Similarity=0.656  Sum_probs=20.1

Q ss_pred             CCccccccccccc---cccEEEecCCceee
Q psy3967         295 NSDGRLCKICYQR---EMGVVFLPCGHIVA  321 (324)
Q Consensus       295 ~~~~~~C~iC~~~---~~~~~~~PCgH~~~  321 (324)
                      ..+...|.||++.   ...++.+||||+.+
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc   41 (78)
T 2ect_A           12 VGSGLECPVCKEDYALGESVRQLPCNHLFH   41 (78)
T ss_dssp             SSSSCCCTTTTSCCCTTSCEEECTTSCEEE
T ss_pred             CCCCCCCeeCCccccCCCCEEEeCCCCeec
Confidence            3456789999654   46678899999754

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.62  E-value=0.021  Score=40.68  Aligned_cols=27  Identities=22%  Similarity=0.311  Sum_probs=23.1

Q ss_pred             CCccccccccccccccEEEecCCceee
Q psy3967         295 NSDGRLCKICYQREMGVVFLPCGHIVA  321 (324)
Q Consensus       295 ~~~~~~C~iC~~~~~~~~~~PCgH~~~  321 (324)
                      ..+...|.||++.-.+.+.+||||..+
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC   38 (66)
T 2ecy_A           12 VEDKYKCEKCHLVLCSPKQTECGHRFC   38 (66)
T ss_dssp             CCCCEECTTTCCEESSCCCCSSSCCCC
T ss_pred             CCcCCCCCCCChHhcCeeECCCCCHHH
Confidence            445788999999999999999999854

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.50  E-value=0.073  Score=38.49  Aligned_cols=27  Identities=22%  Similarity=0.455  Sum_probs=20.5

Q ss_pred             CCcccccccccccc---ccEEEecCCceee
Q psy3967         295 NSDGRLCKICYQRE---MGVVFLPCGHIVA  321 (324)
Q Consensus       295 ~~~~~~C~iC~~~~---~~~~~~PCgH~~~  321 (324)
                      ..+...|.||++.-   ..++.+||||+.+
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~   41 (74)
T 2ep4_A           12 LNLHELCAVCLEDFKPRDELGICPCKHAFH   41 (74)
T ss_dssp             CCCSCBCSSSCCBCCSSSCEEEETTTEEEE
T ss_pred             CCCCCCCcCCCcccCCCCcEEEcCCCCEec
Confidence            34567899999773   5677789999854

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=93.31  E-value=0.037  Score=53.77  Aligned_cols=24  Identities=42%  Similarity=0.946  Sum_probs=22.0

Q ss_pred             cccccccccccccEEEecCCceee
Q psy3967         298 GRLCKICYQREMGVVFLPCGHIVA  321 (324)
Q Consensus       298 ~~~C~iC~~~~~~~~~~PCgH~~~  321 (324)
                      ...|.||++...+.+++||||..|
T Consensus       332 ~~~C~ICle~~~~pv~lpCGH~FC  355 (389)
T 2y1n_A          332 FQLCKICAENDKDVKIEPCGHLMC  355 (389)
T ss_dssp             SSBCTTTSSSBCCEEEETTCCEEC
T ss_pred             CCCCCccCcCCCCeEEeCCCChhh
Confidence            468999999999999999999974

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=93.11  E-value=0.049  Score=41.17  Aligned_cols=28  Identities=36%  Similarity=0.721  Sum_probs=24.0

Q ss_pred             CCCccccccccccccccEEEec-CCceee
Q psy3967         294 PNSDGRLCKICYQREMGVVFLP-CGHIVA  321 (324)
Q Consensus       294 ~~~~~~~C~iC~~~~~~~~~~P-CgH~~~  321 (324)
                      ...+...|.||++.-.+-+.+| |||..+
T Consensus         9 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC   37 (92)
T 3ztg_A            9 PIPDELLCLICKDIMTDAVVIPCCGNSYC   37 (92)
T ss_dssp             CCCTTTEETTTTEECSSCEECTTTCCEEC
T ss_pred             cCCcCCCCCCCChhhcCceECCCCCCHHH
Confidence            3456789999999999999999 999764

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=92.75  E-value=0.05  Score=36.97  Aligned_cols=25  Identities=40%  Similarity=0.844  Sum_probs=19.9

Q ss_pred             cccccccccccccc---EEEec-CCceee
Q psy3967         297 DGRLCKICYQREMG---VVFLP-CGHIVA  321 (324)
Q Consensus       297 ~~~~C~iC~~~~~~---~~~~P-CgH~~~  321 (324)
                      +...|.||++.-.+   ++.+| |||...
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~   32 (55)
T 1iym_A            4 DGVECAVCLAELEDGEEARFLPRCGHGFH   32 (55)
T ss_dssp             CSCCCTTTCCCCCTTSCCEECSSSCCEEC
T ss_pred             CCCcCccCCccccCCCceEECCCCCCccc
Confidence            45689999988666   88888 999743

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=92.44  E-value=0.045  Score=39.11  Aligned_cols=25  Identities=28%  Similarity=0.611  Sum_probs=20.3

Q ss_pred             ccccccccccccccE-------EEecCCceee
Q psy3967         297 DGRLCKICYQREMGV-------VFLPCGHIVA  321 (324)
Q Consensus       297 ~~~~C~iC~~~~~~~-------~~~PCgH~~~  321 (324)
                      +...|.||++.-.+.       +++||||..+
T Consensus         9 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc   40 (71)
T 3ng2_A            9 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFC   40 (71)
T ss_dssp             TCCBCTTTCCBHHHHHTTTCCEEECTTSCEEE
T ss_pred             CCCCCcccChhhhccccccCCeEeCCCCChHh
Confidence            467899999886664       9999999754

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=92.41  E-value=0.046  Score=38.06  Aligned_cols=24  Identities=29%  Similarity=0.602  Sum_probs=19.4

Q ss_pred             cccccccccccccE-------EEecCCceee
Q psy3967         298 GRLCKICYQREMGV-------VFLPCGHIVA  321 (324)
Q Consensus       298 ~~~C~iC~~~~~~~-------~~~PCgH~~~  321 (324)
                      ...|.||++.-.+.       +++||||..+
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc   33 (64)
T 2xeu_A            3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFC   33 (64)
T ss_dssp             CCBCTTTCCBHHHHHHTTCCEEEETTSCEEE
T ss_pred             CCCCCccChhhhCccccCCCEEeCCCCCchh
Confidence            46799999976653       8999999854

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=92.26  E-value=0.096  Score=39.83  Aligned_cols=26  Identities=27%  Similarity=0.566  Sum_probs=20.8

Q ss_pred             Ccccccccccccccc---EEEecCCceee
Q psy3967         296 SDGRLCKICYQREMG---VVFLPCGHIVA  321 (324)
Q Consensus       296 ~~~~~C~iC~~~~~~---~~~~PCgH~~~  321 (324)
                      .+...|.||++.-.+   ++.+||||..+
T Consensus        38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh   66 (91)
T 2l0b_A           38 GQEMCCPICCSEYVKGDVATELPCHHYFH   66 (91)
T ss_dssp             SSCSEETTTTEECCTTCEEEEETTTEEEE
T ss_pred             CCCCCCcccChhhcCCCcEEecCCCChHH
Confidence            456789999977655   88999999754

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.25  E-value=0.1  Score=37.94  Aligned_cols=26  Identities=31%  Similarity=0.644  Sum_probs=19.7

Q ss_pred             Cccccccccccc---cccEEEecCCceee
Q psy3967         296 SDGRLCKICYQR---EMGVVFLPCGHIVA  321 (324)
Q Consensus       296 ~~~~~C~iC~~~---~~~~~~~PCgH~~~  321 (324)
                      .+...|.||++.   ...++.+||||+..
T Consensus        21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh   49 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLLRVLPCNHEFH   49 (75)
T ss_dssp             SSCCEETTTTEECCBTCEEEEETTTEEEE
T ss_pred             CCCCCCeECCcccCCCCeEEEECCCCHhH
Confidence            346789999955   34568999999854

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=92.24  E-value=0.053  Score=42.87  Aligned_cols=27  Identities=30%  Similarity=0.597  Sum_probs=23.4

Q ss_pred             CCccccccccccccccEEEecCCceee
Q psy3967         295 NSDGRLCKICYQREMGVVFLPCGHIVA  321 (324)
Q Consensus       295 ~~~~~~C~iC~~~~~~~~~~PCgH~~~  321 (324)
                      ..+...|.||++.-.+-+.+||||..+
T Consensus        12 ~~~~~~C~iC~~~~~~p~~~~CgH~fC   38 (115)
T 3l11_A           12 SLSECQCGICMEILVEPVTLPCNHTLC   38 (115)
T ss_dssp             CHHHHBCTTTCSBCSSCEECTTSCEEC
T ss_pred             CCCCCCCccCCcccCceeEcCCCCHHh
Confidence            445788999999999999999999765

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=91.93  E-value=0.042  Score=38.89  Aligned_cols=24  Identities=21%  Similarity=0.533  Sum_probs=17.5

Q ss_pred             ccccccccc-cccc----EEEecCCceee
Q psy3967         298 GRLCKICYQ-REMG----VVFLPCGHIVA  321 (324)
Q Consensus       298 ~~~C~iC~~-~~~~----~~~~PCgH~~~  321 (324)
                      +..|.||++ .-.+    ++++||||..+
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC   31 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLC   31 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEE
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCHhH
Confidence            467999999 2222    26789999865

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=91.63  E-value=0.066  Score=42.94  Aligned_cols=26  Identities=19%  Similarity=0.346  Sum_probs=22.7

Q ss_pred             CccccccccccccccEEEecCCceee
Q psy3967         296 SDGRLCKICYQREMGVVFLPCGHIVA  321 (324)
Q Consensus       296 ~~~~~C~iC~~~~~~~~~~PCgH~~~  321 (324)
                      .+...|.||++.-.+-+.+||||..+
T Consensus        50 ~~~~~C~IC~~~~~~p~~~~CgH~fC   75 (124)
T 3fl2_A           50 EETFQCICCQELVFRPITTVCQHNVC   75 (124)
T ss_dssp             HHHTBCTTTSSBCSSEEECTTSCEEE
T ss_pred             ccCCCCCcCChHHcCcEEeeCCCccc
Confidence            45678999999999999999999765

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=91.44  E-value=0.14  Score=37.30  Aligned_cols=26  Identities=15%  Similarity=0.198  Sum_probs=22.9

Q ss_pred             CccccccccccccccEEEecCCceee
Q psy3967         296 SDGRLCKICYQREMGVVFLPCGHIVA  321 (324)
Q Consensus       296 ~~~~~C~iC~~~~~~~~~~PCgH~~~  321 (324)
                      .+...|.||++.-.+-|.+||||..+
T Consensus         6 ~~~~~C~IC~~~~~~Pv~~~CgH~fc   31 (78)
T 1t1h_A            6 PEYFRCPISLELMKDPVIVSTGQTYE   31 (78)
T ss_dssp             SSSSSCTTTSCCCSSEEEETTTEEEE
T ss_pred             cccCCCCCccccccCCEEcCCCCeec
Confidence            45678999999999999999999865

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=91.09  E-value=0.056  Score=40.46  Aligned_cols=27  Identities=26%  Similarity=0.673  Sum_probs=20.8

Q ss_pred             CCcccccccccccc--ccEEEec--CCceee
Q psy3967         295 NSDGRLCKICYQRE--MGVVFLP--CGHIVA  321 (324)
Q Consensus       295 ~~~~~~C~iC~~~~--~~~~~~P--CgH~~~  321 (324)
                      ..++..|-||++.-  .+++|+|  |||..+
T Consensus         8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC   38 (78)
T 1e4u_A            8 KEDPVECPLCMEPLEIDDINFFPCTCGYQIC   38 (78)
T ss_dssp             CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCC
T ss_pred             cccCCcCCccCccCccccccccccCCCCCcC
Confidence            34577899999965  4677887  999754

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=90.50  E-value=0.16  Score=40.43  Aligned_cols=28  Identities=32%  Similarity=0.579  Sum_probs=24.1

Q ss_pred             CCCccccccccccccccEEEecCCceee
Q psy3967         294 PNSDGRLCKICYQREMGVVFLPCGHIVA  321 (324)
Q Consensus       294 ~~~~~~~C~iC~~~~~~~~~~PCgH~~~  321 (324)
                      ...+...|.||++.-.+-+.+||||..+
T Consensus        14 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC   41 (118)
T 3hct_A           14 PLESKYECPICLMALREAVQTPCGHRFC   41 (118)
T ss_dssp             CCCGGGBCTTTCSBCSSEEECTTSCEEE
T ss_pred             CCCCCCCCCcCChhhcCeEECCcCChhh
Confidence            3456789999999999999999999765

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=90.14  E-value=0.11  Score=43.56  Aligned_cols=25  Identities=24%  Similarity=0.359  Sum_probs=22.2

Q ss_pred             ccccccccccccccEEEecCCceee
Q psy3967         297 DGRLCKICYQREMGVVFLPCGHIVA  321 (324)
Q Consensus       297 ~~~~C~iC~~~~~~~~~~PCgH~~~  321 (324)
                      +...|.||++.-.+-+.+||||..+
T Consensus        77 ~~~~C~IC~~~~~~pv~~~CgH~fC  101 (150)
T 1z6u_A           77 QSFMCVCCQELVYQPVTTECFHNVC  101 (150)
T ss_dssp             HHTBCTTTSSBCSSEEECTTSCEEE
T ss_pred             cCCEeecCChhhcCCEEcCCCCchh
Confidence            4678999999999999999999764

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=89.77  E-value=0.17  Score=39.43  Aligned_cols=27  Identities=15%  Similarity=0.304  Sum_probs=22.9

Q ss_pred             CCccccccccccccccEEEe-cCCceee
Q psy3967         295 NSDGRLCKICYQREMGVVFL-PCGHIVA  321 (324)
Q Consensus       295 ~~~~~~C~iC~~~~~~~~~~-PCgH~~~  321 (324)
                      ..+...|.||++.-.+-+.+ ||||..+
T Consensus        12 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC   39 (108)
T 2ckl_A           12 LNPHLMCVLCGGYFIDATTIIECLHSFC   39 (108)
T ss_dssp             HGGGTBCTTTSSBCSSEEEETTTCCEEE
T ss_pred             cCCcCCCccCChHHhCcCEeCCCCChhh
Confidence            34567899999999999998 9999865

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=89.69  E-value=0.12  Score=43.53  Aligned_cols=28  Identities=18%  Similarity=0.337  Sum_probs=23.7

Q ss_pred             CCCccccccccccccccEEEe-cCCceee
Q psy3967         294 PNSDGRLCKICYQREMGVVFL-PCGHIVA  321 (324)
Q Consensus       294 ~~~~~~~C~iC~~~~~~~~~~-PCgH~~~  321 (324)
                      ...+...|.||++.-.+.+.+ ||||..+
T Consensus        50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC   78 (165)
T 2ckl_B           50 SLHSELMCPICLDMLKNTMTTKECLHRFC   78 (165)
T ss_dssp             CCHHHHBCTTTSSBCSSEEEETTTCCEEE
T ss_pred             hCCCCCCCcccChHhhCcCEeCCCCChhH
Confidence            345677899999999998888 9999875

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=89.49  E-value=0.12  Score=39.90  Aligned_cols=27  Identities=15%  Similarity=0.351  Sum_probs=23.5

Q ss_pred             CCccccccccccccccEEE-ecCCceee
Q psy3967         295 NSDGRLCKICYQREMGVVF-LPCGHIVA  321 (324)
Q Consensus       295 ~~~~~~C~iC~~~~~~~~~-~PCgH~~~  321 (324)
                      +.+...|.||++.-.+-+. +||||..+
T Consensus        19 l~~~~~C~IC~~~~~~p~~~~~CgH~FC   46 (100)
T 3lrq_A           19 IAEVFRCFICMEKLRDARLCPHCSKLCC   46 (100)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTTCCEEE
T ss_pred             CCCCCCCccCCccccCccccCCCCChhh
Confidence            4457789999999999999 99999865

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=89.41  E-value=0.057  Score=42.14  Aligned_cols=25  Identities=28%  Similarity=0.416  Sum_probs=21.8

Q ss_pred             ccccccccccccccEEEecCCceee
Q psy3967         297 DGRLCKICYQREMGVVFLPCGHIVA  321 (324)
Q Consensus       297 ~~~~C~iC~~~~~~~~~~PCgH~~~  321 (324)
                      +...|.||++.-.+.+.+||||..+
T Consensus        20 ~~~~C~IC~~~~~~p~~~~CgH~fC   44 (112)
T 1jm7_A           20 KILECPICLELIKEPVSTKCDHIFC   44 (112)
T ss_dssp             HHTSCSSSCCCCSSCCBCTTSCCCC
T ss_pred             CCCCCcccChhhcCeEECCCCCHHH
Confidence            4568999999999999999999764

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=89.14  E-value=0.15  Score=39.08  Aligned_cols=27  Identities=22%  Similarity=0.417  Sum_probs=22.5

Q ss_pred             CCccccccccccccccEEEe-cCCceee
Q psy3967         295 NSDGRLCKICYQREMGVVFL-PCGHIVA  321 (324)
Q Consensus       295 ~~~~~~C~iC~~~~~~~~~~-PCgH~~~  321 (324)
                      ..+...|.||++.-.+-+.+ ||||..+
T Consensus        19 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC   46 (99)
T 2y43_A           19 IDDLLRCGICFEYFNIAMIIPQCSHNYC   46 (99)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTTCCEEE
T ss_pred             CCCCCCcccCChhhCCcCEECCCCCHhh
Confidence            34567899999999999888 9999764

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=88.14  E-value=0.49  Score=35.56  Aligned_cols=28  Identities=18%  Similarity=0.113  Sum_probs=24.2

Q ss_pred             CCCccccccccccccccEEEecCCceee
Q psy3967         294 PNSDGRLCKICYQREMGVVFLPCGHIVA  321 (324)
Q Consensus       294 ~~~~~~~C~iC~~~~~~~~~~PCgH~~~  321 (324)
                      ...+.-.|-||++--.|=|.+||||..+
T Consensus        10 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~   37 (85)
T 2kr4_A           10 DAPDEFRDPLMDTLMTDPVRLPSGTVMD   37 (85)
T ss_dssp             TCCTTTBCTTTCSBCSSEEECTTSCEEE
T ss_pred             cCchheECcccCchhcCCeECCCCCEEC
Confidence            4456789999999999999999999854

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=86.11  E-value=0.29  Score=38.55  Aligned_cols=27  Identities=22%  Similarity=0.373  Sum_probs=23.4

Q ss_pred             CCccccccccccccccEEEecCCceee
Q psy3967         295 NSDGRLCKICYQREMGVVFLPCGHIVA  321 (324)
Q Consensus       295 ~~~~~~C~iC~~~~~~~~~~PCgH~~~  321 (324)
                      +.+...|.||++.-.+-+.+||||..+
T Consensus        20 ~~~~~~C~IC~~~~~~p~~~~CgH~fC   46 (116)
T 1rmd_A           20 FVKSISCQICEHILADPVETSCKHLFC   46 (116)
T ss_dssp             HHHHTBCTTTCSBCSSEEECTTSCEEE
T ss_pred             ccCCCCCCCCCcHhcCcEEcCCCCccc
Confidence            345678999999999999999999865

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=85.34  E-value=0.16  Score=40.27  Aligned_cols=27  Identities=26%  Similarity=0.313  Sum_probs=23.2

Q ss_pred             CCccccccccccccccEEEe-cCCceee
Q psy3967         295 NSDGRLCKICYQREMGVVFL-PCGHIVA  321 (324)
Q Consensus       295 ~~~~~~C~iC~~~~~~~~~~-PCgH~~~  321 (324)
                      +.+...|.||++.-.+-+.+ ||||..+
T Consensus        19 l~~~~~C~IC~~~~~~pv~~~~CgH~fC   46 (117)
T 1jm7_B           19 LEKLLRCSRCTNILREPVCLGGCEHIFC   46 (117)
T ss_dssp             HHHTTSCSSSCSCCSSCBCCCSSSCCBC
T ss_pred             chhCCCCCCCChHhhCccEeCCCCCHHH
Confidence            34567899999999999999 9999865

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=83.78  E-value=1.5  Score=33.87  Aligned_cols=28  Identities=25%  Similarity=0.127  Sum_probs=24.4

Q ss_pred             CCCccccccccccccccEEEecCC-ceee
Q psy3967         294 PNSDGRLCKICYQREMGVVFLPCG-HIVA  321 (324)
Q Consensus       294 ~~~~~~~C~iC~~~~~~~~~~PCg-H~~~  321 (324)
                      ...+...|-||++--.|=|.+||| |..+
T Consensus        18 ~~p~~~~CpI~~~~m~dPV~~~cG~htf~   46 (98)
T 1wgm_A           18 DACDEFLDPIMSTLMCDPVVLPSSRVTVD   46 (98)
T ss_dssp             SCCTTTBCTTTCSBCSSEEECTTTCCEEE
T ss_pred             cCcHhcCCcCccccccCCeECCCCCeEEC
Confidence            455678999999999999999999 9765

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=82.13  E-value=0.63  Score=38.41  Aligned_cols=28  Identities=21%  Similarity=0.317  Sum_probs=24.0

Q ss_pred             CCCccccccccccccccEEEecCCceee
Q psy3967         294 PNSDGRLCKICYQREMGVVFLPCGHIVA  321 (324)
Q Consensus       294 ~~~~~~~C~iC~~~~~~~~~~PCgH~~~  321 (324)
                      ...+...|.||++.-.+-|.+||||..+
T Consensus        27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC   54 (141)
T 3knv_A           27 KLEAKYLCSACRNVLRRPFQAQCGHRYC   54 (141)
T ss_dssp             GCCGGGBCTTTCSBCSSEEECTTSCEEE
T ss_pred             cCCcCcCCCCCChhhcCcEECCCCCccC
Confidence            3456789999999999999999999865

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.24  E-value=0.62  Score=34.49  Aligned_cols=24  Identities=33%  Similarity=0.623  Sum_probs=14.7

Q ss_pred             ccccccccccccc--------------EEEe-cCCceee
Q psy3967         298 GRLCKICYQREMG--------------VVFL-PCGHIVA  321 (324)
Q Consensus       298 ~~~C~iC~~~~~~--------------~~~~-PCgH~~~  321 (324)
                      ...|.||++.-.+              ++.+ +|||+-.
T Consensus        15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH   53 (81)
T 2ecl_A           15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFH   53 (81)
T ss_dssp             CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEE
T ss_pred             CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccC
Confidence            3457777765543              4455 5999853

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=80.84  E-value=1.4  Score=34.19  Aligned_cols=28  Identities=21%  Similarity=0.123  Sum_probs=24.3

Q ss_pred             CCCccccccccccccccEEEecCCceee
Q psy3967         294 PNSDGRLCKICYQREMGVVFLPCGHIVA  321 (324)
Q Consensus       294 ~~~~~~~C~iC~~~~~~~~~~PCgH~~~  321 (324)
                      ...+.-.|-||++--.|=|.+||||..+
T Consensus        25 ~~p~~~~CpI~~~~m~dPV~~~cGhtf~   52 (100)
T 2kre_A           25 DAPDEFRDPLMDTLMTDPVRLPSGTIMD   52 (100)
T ss_dssp             SCSTTTBCTTTCSBCSSEEEETTTEEEE
T ss_pred             cCcHhhCCcCccCcccCCeECCCCCEEc
Confidence            4456789999999999999999999854

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	324
d2i3ha1	90	g.52.1.1 (A:78-167) BIR-containing protein 7 (ML-I	5e-40
d2i3ha1	90	g.52.1.1 (A:78-167) BIR-containing protein 7 (ML-I	3e-22
d1jd5a_	105	g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Dro	6e-40
d1jd5a_	105	g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Dro	1e-21
d2vsla1	96	g.52.1.1 (A:250-345) BIR domains of XIAP {Human (H	7e-38
d2vsla1	96	g.52.1.1 (A:250-345) BIR domains of XIAP {Human (H	1e-21
d3d9ta1	87	g.52.1.1 (A:260-346) 2MIHB/C-IAP-1 {Human (Homo sa	9e-36
d3d9ta1	87	g.52.1.1 (A:260-346) 2MIHB/C-IAP-1 {Human (Homo sa	1e-20
d1i3oe_	111	g.52.1.1 (E:) BIR domains of XIAP {Human (Homo sap	8e-33
d1i3oe_	111	g.52.1.1 (E:) BIR domains of XIAP {Human (Homo sap	9e-21
d2qfaa1	137	g.52.1.1 (A:5-141) Anti-apoptotic protein survivin	8e-30
d2qfaa1	137	g.52.1.1 (A:5-141) Anti-apoptotic protein survivin	1e-22
d1se0a_	97	g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Dro	4e-28
d1se0a_	97	g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Dro	2e-24
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	0.004

>d2i3ha1 g.52.1.1 (A:78-167) BIR-containing protein 7 (ML-IAP, livin) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR-containing protein 7 (ML-IAP, livin)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  133 bits (336), Expect = 5e-40
 Identities = 44/88 (50%), Positives = 57/88 (64%)

Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
           PAFP   + E RL SF  WP++  + P  L  AGFF+TG  D+  CF C GGL+ W+  D
Sbjct: 2   PAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGD 61

Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
           DPWTEHA+WF  C ++   KGQE+IN +
Sbjct: 62  DPWTEHAKWFPGCQFLLRSKGQEYINNI 89

>d2i3ha1 g.52.1.1 (A:78-167) BIR-containing protein 7 (ML-IAP, livin) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR-containing protein 7 (ML-IAP, livin)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.8 bits (215), Expect = 3e-22
 Identities = 36/84 (42%), Positives = 45/84 (53%), Gaps = 8/84 (9%)

Query: 35  NMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWV 93
            M  E  RL SF + WPLT  +  + +AAAGF+  G +      D V+C FC   L  W 
Sbjct: 6   GMGSEELRLASFYD-WPLTAEVPPELLAAAGFFHTGHQ------DKVRCFFCYGGLQSWK 58

Query: 94  QGDDPLKDHEKWSPNCWFLRRLKK 117
           +GDDP  +H KW P C FL R K 
Sbjct: 59  RGDDPWTEHAKWFPGCQFLLRSKG 82

>d1jd5a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 105

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of DIAP1
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  133 bits (337), Expect = 6e-40
 Identities = 47/89 (52%), Positives = 62/89 (69%)

Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
           P +P YA   +RLR+F++WP +L+ KP  L EAGFFYTG  D+  CF CGGGL  W + D
Sbjct: 5   PQYPEYAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWNDND 64

Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQVI 255
           +PW +HA W S C +VKL+KGQ +I+ V 
Sbjct: 65  EPWEQHALWLSQCRFVKLMKGQLYIDTVA 93

>d1jd5a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 105

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of DIAP1
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 86.1 bits (213), Expect = 1e-21
 Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 8/86 (9%)

Query: 32  RKQNMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELG 90
           +     +E  RL +F+  WP        Q+A AGF++ G        D V+C  CG  L 
Sbjct: 6   QYPEYAIETARLRTFEA-WPRNLKQKPHQLAEAGFFYTGVG------DRVRCFSCGGGLM 58

Query: 91  KWVQGDDPLKDHEKWSPNCWFLRRLK 116
            W   D+P + H  W   C F++ +K
Sbjct: 59  DWNDNDEPWEQHALWLSQCRFVKLMK 84

>d2vsla1 g.52.1.1 (A:250-345) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of XIAP
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  128 bits (323), Expect = 7e-38
 Identities = 37/88 (42%), Positives = 55/88 (62%), Gaps = 2/88 (2%)

Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
           P  P+ A YE+R+ +F +W  S+      L  AGF+  G+ D+  CF CGGGL  W+ ++
Sbjct: 8   PRNPSMADYEARIFTFGTWIYSV--NKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSE 65

Query: 227 DPWTEHARWFSSCPYVKLVKGQEFINQV 254
           DPW +HA+W+  C Y+   KGQE+IN +
Sbjct: 66  DPWEQHAKWYPGCKYLLEQKGQEYINNI 93

>d2vsla1 g.52.1.1 (A:250-345) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of XIAP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.3 bits (211), Expect = 1e-21
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 8/82 (9%)

Query: 35  NMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQ 94
           +M     R+ +F   W  + ++ +Q+A AGFY LG+       D VKC  CG  L  W  
Sbjct: 12  SMADYEARIFTFGT-WIYS-VNKEQLARAGFYALGEG------DKVKCFHCGGGLTDWKP 63

Query: 95  GDDPLKDHEKWSPNCWFLRRLK 116
            +DP + H KW P C +L   K
Sbjct: 64  SEDPWEQHAKWYPGCKYLLEQK 85

>d3d9ta1 g.52.1.1 (A:260-346) 2MIHB/C-IAP-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: 2MIHB/C-IAP-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  122 bits (308), Expect = 9e-36
 Identities = 38/81 (46%), Positives = 56/81 (69%)

Query: 174 TYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHA 233
           T+ +R+R+F  WP S+ ++P  L  AGF+Y G+ D   CF C GGL+ WE  DDPW EHA
Sbjct: 3   THAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHA 62

Query: 234 RWFSSCPYVKLVKGQEFINQV 254
           +WF  C ++  +KGQEF++++
Sbjct: 63  KWFPRCEFLIRMKGQEFVDEI 83

>d3d9ta1 g.52.1.1 (A:260-346) 2MIHB/C-IAP-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 87

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: 2MIHB/C-IAP-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.6 bits (204), Expect = 1e-20
 Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 8/82 (9%)

Query: 36  MTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQ 94
           M     R+ +F   WP +  +  +Q+A+AGFY++G+       DDVKC  C   L  W  
Sbjct: 1   MQTHAARMRTFMY-WPSSVPVQPEQLASAGFYYVGRN------DDVKCFCCDGGLRCWES 53

Query: 95  GDDPLKDHEKWSPNCWFLRRLK 116
           GDDP  +H KW P C FL R+K
Sbjct: 54  GDDPWVEHAKWFPRCEFLIRMK 75

>d1i3oe_ g.52.1.1 (E:) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of XIAP
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (289), Expect = 8e-33
 Identities = 36/76 (47%), Positives = 45/76 (59%)

Query: 167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETD 226
           P  P   + E+RL+SF +WP    L P  L  AG +YTG  DQ  CF CGG LK+WE  D
Sbjct: 29  PRNPAMYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFACGGKLKNWEPGD 88

Query: 227 DPWTEHARWFSSCPYV 242
             W+EH R F +C +V
Sbjct: 89  RAWSEHRRHFPNCFFV 104

>d1i3oe_ g.52.1.1 (E:) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of XIAP
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.8 bits (207), Expect = 9e-21
 Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 6/79 (7%)

Query: 35  NMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQ 94
            M  E  RL SF+N     +L+ +++A+AG Y+ G        D V+C  CG +L  W  
Sbjct: 33  AMYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIG------DQVQCFACGGKLKNWEP 86

Query: 95  GDDPLKDHEKWSPNCWFLR 113
           GD    +H +  PNC+F+ 
Sbjct: 87  GDRAWSEHRRHFPNCFFVL 105

>d2qfaa1 g.52.1.1 (A:5-141) Anti-apoptotic protein survivin {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: Anti-apoptotic protein survivin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 8e-30
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 5/91 (5%)

Query: 167 PAFPNYATYESRLRSFDSWPIS--LRLKPVTLTEAGFFYTGKA---DQTLCFRCGGGLKH 221
           P        + R+ +F +WP        P  + EAGF +       D   CF C   L+ 
Sbjct: 3   PPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEG 62

Query: 222 WEETDDPWTEHARWFSSCPYVKLVKGQEFIN 252
           WE  DDP  EH +  S C ++ + K  E + 
Sbjct: 63  WEPDDDPIEEHKKHSSGCAFLSVKKQFEELT 93

>d2qfaa1 g.52.1.1 (A:5-141) Anti-apoptotic protein survivin {Human (Homo sapiens) [TaxId: 9606]} Length = 137

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: Anti-apoptotic protein survivin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.3 bits (221), Expect = 1e-22
 Identities = 33/116 (28%), Positives = 57/116 (49%), Gaps = 11/116 (9%)

Query: 36  MTLECDRLDSFKNSWPLT---YLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKW 92
             L+  R+ +FKN WP       + ++MA AGF     +      D  +C FC  EL  W
Sbjct: 8   PFLKDHRISTFKN-WPFLEGCACTPERMAEAGFIHCPTENEP---DLAQCFFCFKELEGW 63

Query: 93  VQGDDPLKDHEKWSPNCWFLRRLKKGNTESAGYDTCGSLIIEPPKSKSEVSQSCSQ 148
              DDP+++H+K S  C FL  +KK   E    +    L ++  ++K+++++  + 
Sbjct: 64  EPDDDPIEEHKKHSSGCAFL-SVKKQFEELTLGE---FLKLDRERAKNKIAKETNN 115

>d1se0a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 97

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of DIAP1
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score =  102 bits (256), Expect = 4e-28
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 171 NYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWT 230
           +    E+RL++F  WP+   L    L + G ++T   D+  CF CG  +  WE+ D P  
Sbjct: 2   DLNREETRLKTFTDWPLD-WLDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVP 60

Query: 231 EHARWFSSCPYVK 243
           EH RW  +CP ++
Sbjct: 61  EHQRWSPNCPLLR 73

>d1se0a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 97

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of DIAP1
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 92.6 bits (230), Expect = 2e-24
 Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 7/85 (8%)

Query: 35  NMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQ 94
           ++  E  RL +F + WPL +L  +Q+A  G YF          D VKC FCG+E+G W Q
Sbjct: 2   DLNREETRLKTFTD-WPLDWLDKRQLAQTGMYFTHAG------DKVKCFFCGVEIGSWEQ 54

Query: 95  GDDPLKDHEKWSPNCWFLRRLKKGN 119
            D P+ +H++WSPNC  LRR    N
Sbjct: 55  EDQPVPEHQRWSPNCPLLRRRTTNN 79

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (76), Expect = 0.004
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 287 QDDKRPEPNSDGRLCKICYQREMGVVFLPCGHI 319
           Q +   E  S  +LCKIC + +  V   PCGH+
Sbjct: 12  QYELYCEMGSTFQLCKICAENDKDVKIEPCGHL 44

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	324
d2i3ha1	90	BIR-containing protein 7 (ML-IAP, livin) {Human (H	99.97
d1jd5a_	105	BIR domains of DIAP1 {Fruit fly (Drosophila melano	99.97
d3d9ta1	87	2MIHB/C-IAP-1 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d2vsla1	96	BIR domains of XIAP {Human (Homo sapiens) [TaxId:	99.97
d1i3oe_	111	BIR domains of XIAP {Human (Homo sapiens) [TaxId:	99.95
d1se0a_	97	BIR domains of DIAP1 {Fruit fly (Drosophila melano	99.94
d1se0a_	97	BIR domains of DIAP1 {Fruit fly (Drosophila melano	99.93
d2qfaa1	137	Anti-apoptotic protein survivin {Human (Homo sapie	99.92
d2i3ha1	90	BIR-containing protein 7 (ML-IAP, livin) {Human (H	99.92
d2vsla1	96	BIR domains of XIAP {Human (Homo sapiens) [TaxId:	99.92
d3d9ta1	87	2MIHB/C-IAP-1 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1i3oe_	111	BIR domains of XIAP {Human (Homo sapiens) [TaxId:	99.9
d1jd5a_	105	BIR domains of DIAP1 {Fruit fly (Drosophila melano	99.9
d2qfaa1	137	Anti-apoptotic protein survivin {Human (Homo sapie	99.89
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	95.84
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	94.97
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	92.24
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	91.85
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	89.63
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	88.56
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	88.17
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	87.04
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	86.24
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	84.11
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	83.82
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	81.88
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	80.52

>d2i3ha1 g.52.1.1 (A:78-167) BIR-containing protein 7 (ML-IAP, livin) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR-containing protein 7 (ML-IAP, livin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6e-33  Score=217.31  Aligned_cols=88  Identities=50%  Similarity=1.069  Sum_probs=85.8

Q ss_pred             CCCCCCCCHHHHHhccccCCCCCCCChHHHHHcCCcccCCCCceEEeeeCCcccCCCCCCChHHHHHhhcCCCchhhhcc
Q psy3967         167 PAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVK  246 (324)
Q Consensus       167 p~~~~y~~~~~Rl~SF~~Wp~~~~~~~~~LA~AGFyytg~~D~v~Cf~Cg~~l~~W~~~DdP~~eH~~~~p~C~f~~~~k  246 (324)
                      |.+|+|.++++||+||.+||+...+++++||+|||||+|.+|.|+||+|+++|.+|+++||||+||++|+|+|.|++.+|
T Consensus         2 P~~~~~~~~~~Rl~TF~~Wp~~~~~~~~~LA~aGFyytg~~D~v~C~~C~~~l~~W~~~Ddp~~eH~r~~p~C~fv~~~k   81 (90)
T d2i3ha1           2 PAFPGMGSEELRLASFYDWPLTAEVPPELLAAAGFFHTGHQDKVRCFFCYGGLQSWKRGDDPWTEHAKWFPGCQFLLRSK   81 (90)
T ss_dssp             CSCGGGCCHHHHHHTTTTCSCTTTSCHHHHHHTTEEECSSTTCEEETTTCCEEECCCTTCCHHHHHHHHCTTCHHHHHHH
T ss_pred             CCCccccCHHHHHHHHHhCCCCCCCCHHHHHhcCCEECCCCCEEEeccCCCEeCCCCCCCCHHHHHHHHCcCCcchHHhc
Confidence            78999999999999999999988889999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHhh
Q psy3967         247 GQEFINQV  254 (324)
Q Consensus       247 g~~~i~~v  254 (324)
                      |++||++|
T Consensus        82 ~~~fv~~i   89 (90)
T d2i3ha1          82 GQEYINNI   89 (90)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHhhc
Confidence            99999987

>d1jd5a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of DIAP1
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=8.5e-32  Score=216.42  Aligned_cols=93  Identities=51%  Similarity=1.121  Sum_probs=89.5

Q ss_pred             CCCCCCCCCCHHHHHhccccCCCCCCCChHHHHHcCCcccCCCCceEEeeeCCcccCCCCCCChHHHHHhhcCCCchhhh
Q psy3967         165 SPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKL  244 (324)
Q Consensus       165 ~~p~~~~y~~~~~Rl~SF~~Wp~~~~~~~~~LA~AGFyytg~~D~v~Cf~Cg~~l~~W~~~DdP~~eH~~~~p~C~f~~~  244 (324)
                      ..|.||+|.++++||+||.+||+...++++.||+|||||+|.+|.|+||+|++.|.+|+++||||++|++|+|+|.|++.
T Consensus         3 ~~p~~p~~~~~~~Rl~TF~~wp~~~~~~~~~LA~aGFyytg~~D~v~Cf~C~~~l~~W~~~D~p~~eH~~~~P~C~fv~~   82 (105)
T d1jd5a_           3 YFPQYPEYAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWNDNDEPWEQHALWLSQCRFVKL   82 (105)
T ss_dssp             CCCSCGGGCSHHHHHHHGGGCCTTCSSCHHHHHHTTEEECSSTTCEEETTTCCEEECCCTTCCHHHHHHHHCTTCHHHHH
T ss_pred             CCCCCCCccCHHHHHHHHHhCCCCCCcCHHHHHHcCCEECCCCCEEEeCccCCCccCCCCCCCHHHHHHHHCcCCcchhh
Confidence            46899999999999999999999888899999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhHHHhhhcc
Q psy3967         245 VKGQEFINQVIGH  257 (324)
Q Consensus       245 ~kg~~~i~~v~~~  257 (324)
                      +||++||++++..
T Consensus        83 ~k~~~fv~~~~~~   95 (105)
T d1jd5a_          83 MKGQLYIDTVAAK   95 (105)
T ss_dssp             HHCHHHHHHHHHS
T ss_pred             hCCHHHHHHHhcc
Confidence            9999999999864

>d3d9ta1 g.52.1.1 (A:260-346) 2MIHB/C-IAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: 2MIHB/C-IAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.1e-32  Score=209.60  Aligned_cols=86  Identities=45%  Similarity=1.082  Sum_probs=82.4

Q ss_pred             CCCHHHHHhccccCCCCCCCChHHHHHcCCcccCCCCceEEeeeCCcccCCCCCCChHHHHHhhcCCCchhhhccchhHH
Q psy3967         172 YATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKLVKGQEFI  251 (324)
Q Consensus       172 y~~~~~Rl~SF~~Wp~~~~~~~~~LA~AGFyytg~~D~v~Cf~Cg~~l~~W~~~DdP~~eH~~~~p~C~f~~~~kg~~~i  251 (324)
                      |.++++||+||.+||+...++++.||+|||||+|.+|.|+||+||+.|.+|+++||||+||++|+|+|+|++++||++||
T Consensus         1 m~~~~~Rl~TF~~Wp~~~~~~~~~LA~aGFyytg~~D~v~C~~C~~~l~~W~~~Ddp~~eH~~~~p~C~fv~~~k~~~fv   80 (87)
T d3d9ta1           1 MQTHAARMRTFMYWPSSVPVQPEQLASAGFYYVGRNDDVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEFLIRMKGQEFV   80 (87)
T ss_dssp             GCSHHHHHHGGGGCCTTSSSCHHHHHHTTEEECSSTTCEEETTTCCEEECCCTTCCHHHHHHHHCTTBHHHHHHHCHHHH
T ss_pred             CccHHHHHHHHhcCCCCCCcCHHHHHHcCCEECCCCCEEEeCcCCCEecCcCCCCcchHHHHHHCcCCchhHhhCCHHHH
Confidence            46789999999999998888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhhhcc
Q psy3967         252 NQVIGH  257 (324)
Q Consensus       252 ~~v~~~  257 (324)
                      ++|++.
T Consensus        81 ~~v~~~   86 (87)
T d3d9ta1          81 DEIQGR   86 (87)
T ss_dssp             HHHTTC
T ss_pred             HHHHhc
Confidence            999864

>d2vsla1 g.52.1.1 (A:250-345) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of XIAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=8.6e-32  Score=212.87  Aligned_cols=89  Identities=42%  Similarity=0.997  Sum_probs=85.2

Q ss_pred             CCCCCCCCCCHHHHHhccccCCCCCCCChHHHHHcCCcccCCCCceEEeeeCCcccCCCCCCChHHHHHhhcCCCchhhh
Q psy3967         165 SPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKL  244 (324)
Q Consensus       165 ~~p~~~~y~~~~~Rl~SF~~Wp~~~~~~~~~LA~AGFyytg~~D~v~Cf~Cg~~l~~W~~~DdP~~eH~~~~p~C~f~~~  244 (324)
                      ..|.+|+|.++++||+||++||+.  +++++||+|||||||.+|+|+||+||++|.+|+++||||+||++|+|+|.|++.
T Consensus         6 ~~P~~p~m~~~~~Rl~TF~~Wp~~--~~~~~LA~aGFyytg~~D~v~Cf~C~~~l~~W~~~D~P~~eH~~~~p~C~fv~~   83 (96)
T d2vsla1           6 NLPRNPSMADYEARIFTFGTWIYS--VNKEQLARAGFYALGEGDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKYLLE   83 (96)
T ss_dssp             SSCSCGGGCSHHHHHHTTTTCCSS--SCHHHHHHTTEEECSSTTCEEETTTCCEEESCCTTCCHHHHHHHHCTTCHHHHH
T ss_pred             CCCCCccccCHHHHHHHHccCCCC--CCHHHHHHhCCEEcCCCCEEEeccCCCEeCCCCCCCCHHHHHHHHCcCCeehHh
Confidence            457899999999999999999975  479999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhHHHhhh
Q psy3967         245 VKGQEFINQVI  255 (324)
Q Consensus       245 ~kg~~~i~~v~  255 (324)
                      +||++||++|+
T Consensus        84 ~kg~~~v~~v~   94 (96)
T d2vsla1          84 QKGQEYINNIH   94 (96)
T ss_dssp             HHHHHHHHHHT
T ss_pred             ccChhhhhccc
Confidence            99999999987

>d1i3oe_ g.52.1.1 (E:) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of XIAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=9.9e-30  Score=205.88  Aligned_cols=80  Identities=45%  Similarity=0.892  Sum_probs=76.2

Q ss_pred             CCCCCCCCCCHHHHHhccccCCCCCCCChHHHHHcCCcccCCCCceEEeeeCCcccCCCCCCChHHHHHhhcCCCchhhh
Q psy3967         165 SPPAFPNYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKL  244 (324)
Q Consensus       165 ~~p~~~~y~~~~~Rl~SF~~Wp~~~~~~~~~LA~AGFyytg~~D~v~Cf~Cg~~l~~W~~~DdP~~eH~~~~p~C~f~~~  244 (324)
                      ..|.+|.|.++++||+||.+||....+++++||+|||||+|.+|.|+||+||+.|.+|+++||||++|++|+|+|.|++.
T Consensus        27 ~~P~~~~m~~ee~Rl~TF~~Wp~~~~~~~~~LA~aGFyytg~~D~v~Cf~C~~~l~~W~~~DdP~~eH~r~sP~C~fvl~  106 (111)
T d1i3oe_          27 IYPRNPAMYSEEARLKSFQNWPDYAHLTPRELASAGLYYTGIGDQVQCFACGGKLKNWEPGDRAWSEHRRHFPNCFFVLG  106 (111)
T ss_dssp             TCSSCGGGCSHHHHHTTCTTCCSSCSSCHHHHHHTTEEEEEETTEEEETTTCCEECCCCTTCCHHHHHHHHCTTCHHHHT
T ss_pred             CCCCCccccCHHHHHHHHHhCCCccCcCHHHHHHcCCEECCCCCeEEeCcCCCEeCCCCCCCCHHHHHHHHCcCCceeec
Confidence            45889999999999999999998877899999999999999999999999999999999999999999999999999964

>d1se0a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of DIAP1
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=5.6e-28  Score=191.28  Aligned_cols=82  Identities=44%  Similarity=1.002  Sum_probs=78.3

Q ss_pred             cCCcCHHHHHhccCCCCCCCCcCHHHHHHcCceecCCCCCCCCCCeEeecccCceeccccCCCChhhhhcccCCCCcccc
Q psy3967          34 QNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLR  113 (324)
Q Consensus        34 ~~~~~e~~RL~SF~~~Wp~~~~~~~~LA~aGFyy~g~~~~~~~~D~V~C~~C~~~l~~w~~~Ddp~~eH~~~sP~C~f~~  113 (324)
                      .+|.+|++||+||.+ ||+..+++++||+|||||+|.      +|.|+||+|+++|.+|+.+|+|+.+|++++|+|+|++
T Consensus         1 ~dm~~e~~Rl~TF~~-Wp~~~~~~~~LA~aGFyytg~------~D~v~C~~C~~~l~~W~~~D~p~~eH~r~~p~C~f~~   73 (97)
T d1se0a_           1 NDLNREETRLKTFTD-WPLDWLDKRQLAQTGMYFTHA------GDKVKCFFCGVEIGSWEQEDQPVPEHQRWSPNCPLLR   73 (97)
T ss_dssp             CCTTBHHHHHTTCTT-CCCTTSCHHHHHHTTEEECSS------TTCEEETTTCCEEESCCTTCCHHHHHHHHCTTCTTTT
T ss_pred             CchHhHHHHHHHHhh-CCcCcCCHHHHHhcCCEECCC------CCEEEeCcCCCCcCCCCCCCCHHHHHHHHCcCCcccc
Confidence            369999999999999 999889999999999999999      9999999999999999999999999999999999999


Q ss_pred             ccccCCccC
Q psy3967         114 RLKKGNTES  122 (324)
Q Consensus       114 ~~~~~Nv~~  122 (324)
                      ...++|+++
T Consensus        74 ~~~~~nvp~   82 (97)
T d1se0a_          74 RRTTNNVPI   82 (97)
T ss_dssp             TCCCCCBCS
T ss_pred             cCCCCceec
Confidence            888888875

>d1se0a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of DIAP1
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.93  E-value=9.1e-27  Score=184.27  Aligned_cols=73  Identities=34%  Similarity=0.869  Sum_probs=69.2

Q ss_pred             CCCCHHHHHhccccCCCCCCCChHHHHHcCCcccCCCCceEEeeeCCcccCCCCCCChHHHHHhhcCCCchhhh
Q psy3967         171 NYATYESRLRSFDSWPISLRLKPVTLTEAGFFYTGKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPYVKL  244 (324)
Q Consensus       171 ~y~~~~~Rl~SF~~Wp~~~~~~~~~LA~AGFyytg~~D~v~Cf~Cg~~l~~W~~~DdP~~eH~~~~p~C~f~~~  244 (324)
                      +|.++++||+||.+||+.. +++++||+|||||+|.+|.|+||+||+.|.+|+++||||++|++|+|+|.|++.
T Consensus         2 dm~~e~~Rl~TF~~Wp~~~-~~~~~LA~aGFyytg~~D~v~C~~C~~~l~~W~~~D~p~~eH~r~~p~C~f~~~   74 (97)
T d1se0a_           2 DLNREETRLKTFTDWPLDW-LDKRQLAQTGMYFTHAGDKVKCFFCGVEIGSWEQEDQPVPEHQRWSPNCPLLRR   74 (97)
T ss_dssp             CTTBHHHHHTTCTTCCCTT-SCHHHHHHTTEEECSSTTCEEETTTCCEEESCCTTCCHHHHHHHHCTTCTTTTT
T ss_pred             chHhHHHHHHHHhhCCcCc-CCHHHHHhcCCEECCCCCEEEeCcCCCCcCCCCCCCCHHHHHHHHCcCCccccc
Confidence            5788999999999999864 789999999999999999999999999999999999999999999999999874

>d2qfaa1 g.52.1.1 (A:5-141) Anti-apoptotic protein survivin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: Anti-apoptotic protein survivin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.5e-26  Score=192.33  Aligned_cols=85  Identities=31%  Similarity=0.581  Sum_probs=76.0

Q ss_pred             CCCCCCCCHHHHHhccccCCCC--CCCChHHHHHcCCccc---CCCCceEEeeeCCcccCCCCCCChHHHHHhhcCCCch
Q psy3967         167 PAFPNYATYESRLRSFDSWPIS--LRLKPVTLTEAGFFYT---GKADQTLCFRCGGGLKHWEETDDPWTEHARWFSSCPY  241 (324)
Q Consensus       167 p~~~~y~~~~~Rl~SF~~Wp~~--~~~~~~~LA~AGFyyt---g~~D~v~Cf~Cg~~l~~W~~~DdP~~eH~~~~p~C~f  241 (324)
                      |...+|..++.||+||.+||+.  ..++++.||+|||||+   |.+|.|+||+|+++|.+|+++||||++|++|+|+|+|
T Consensus         3 p~~~~~~~~~~Rl~TF~~WP~~~~~~~~~~~LA~AGFyy~~~~~~~D~v~Cf~C~~~l~~We~~DdP~~eH~~~~p~C~f   82 (137)
T d2qfaa1           3 PPAWQPFLKDHRISTFKNWPFLEGCACTPERMAEAGFIHCPTENEPDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCAF   82 (137)
T ss_dssp             CTTTGGGSHHHHHHTCCSCSCCSSCSSCHHHHHHTTEEECCBTTBTTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCGG
T ss_pred             CCCcccccHHHHHHHHhcCCCccCCCCCHHHHHhcCceECCCCCCCCeEEecccCCCcCCCCCCCCHHHHHHHHCcCCce
Confidence            5556677999999999999964  3578999999999995   4579999999999999999999999999999999999


Q ss_pred             hhhccchhHH
Q psy3967         242 VKLVKGQEFI  251 (324)
Q Consensus       242 ~~~~kg~~~i  251 (324)
                      +++.||.+++
T Consensus        83 v~~~k~~~~~   92 (137)
T d2qfaa1          83 LSVKKQFEEL   92 (137)
T ss_dssp             GGCCSCGGGC
T ss_pred             EeeeCCCccc
Confidence            9999987554

>d2i3ha1 g.52.1.1 (A:78-167) BIR-containing protein 7 (ML-IAP, livin) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR-containing protein 7 (ML-IAP, livin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4.9e-26  Score=177.74  Aligned_cols=76  Identities=46%  Similarity=0.876  Sum_probs=71.6

Q ss_pred             ccCCcCHHHHHhccCCCCCCCC-cCHHHHHHcCceecCCCCCCCCCCeEeecccCceeccccCCCChhhhhcccCCCCcc
Q psy3967          33 KQNMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWF  111 (324)
Q Consensus        33 ~~~~~~e~~RL~SF~~~Wp~~~-~~~~~LA~aGFyy~g~~~~~~~~D~V~C~~C~~~l~~w~~~Ddp~~eH~~~sP~C~f  111 (324)
                      ..+|.++++||+||.+ ||+.. +++++||+|||||+|.      +|.|+|++|+++|.+|+++|||+++|++++|+|+|
T Consensus         4 ~~~~~~~~~Rl~TF~~-Wp~~~~~~~~~LA~aGFyytg~------~D~v~C~~C~~~l~~W~~~Ddp~~eH~r~~p~C~f   76 (90)
T d2i3ha1           4 FPGMGSEELRLASFYD-WPLTAEVPPELLAAAGFFHTGH------QDKVRCFFCYGGLQSWKRGDDPWTEHAKWFPGCQF   76 (90)
T ss_dssp             CGGGCCHHHHHHTTTT-CSCTTTSCHHHHHHTTEEECSS------TTCEEETTTCCEEECCCTTCCHHHHHHHHCTTCHH
T ss_pred             CccccCHHHHHHHHHh-CCCCCCCCHHHHHhcCCEECCC------CCEEEeccCCCEeCCCCCCCCHHHHHHHHCcCCcc
Confidence            4579999999999999 99875 7999999999999999      99999999999999999999999999999999999


Q ss_pred             cccc
Q psy3967         112 LRRL  115 (324)
Q Consensus       112 ~~~~  115 (324)
                      ++..
T Consensus        77 v~~~   80 (90)
T d2i3ha1          77 LLRS   80 (90)
T ss_dssp             HHHH
T ss_pred             hHHh
Confidence            9754

>d2vsla1 g.52.1.1 (A:250-345) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of XIAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.4e-26  Score=180.51  Aligned_cols=76  Identities=38%  Similarity=0.799  Sum_probs=71.4

Q ss_pred             cccCCcCHHHHHhccCCCCCCCCcCHHHHHHcCceecCCCCCCCCCCeEeecccCceeccccCCCChhhhhcccCCCCcc
Q psy3967          32 RKQNMTLECDRLDSFKNSWPLTYLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWF  111 (324)
Q Consensus        32 ~~~~~~~e~~RL~SF~~~Wp~~~~~~~~LA~aGFyy~g~~~~~~~~D~V~C~~C~~~l~~w~~~Ddp~~eH~~~sP~C~f  111 (324)
                      ...+|.++++||+||.+ ||+. +++++||+|||||+|.      +|.|+|++|++.|.+|+++|+|+++|++++|+|+|
T Consensus         9 ~~p~m~~~~~Rl~TF~~-Wp~~-~~~~~LA~aGFyytg~------~D~v~Cf~C~~~l~~W~~~D~P~~eH~~~~p~C~f   80 (96)
T d2vsla1           9 RNPSMADYEARIFTFGT-WIYS-VNKEQLARAGFYALGE------GDKVKCFHCGGGLTDWKPSEDPWEQHAKWYPGCKY   80 (96)
T ss_dssp             SCGGGCSHHHHHHTTTT-CCSS-SCHHHHHHTTEEECSS------TTCEEETTTCCEEESCCTTCCHHHHHHHHCTTCHH
T ss_pred             CCccccCHHHHHHHHcc-CCCC-CCHHHHHHhCCEEcCC------CCEEEeccCCCEeCCCCCCCCHHHHHHHHCcCCee
Confidence            45679999999999999 9975 7899999999999999      99999999999999999999999999999999999


Q ss_pred             cccc
Q psy3967         112 LRRL  115 (324)
Q Consensus       112 ~~~~  115 (324)
                      ++..
T Consensus        81 v~~~   84 (96)
T d2vsla1          81 LLEQ   84 (96)
T ss_dssp             HHHH
T ss_pred             hHhc
Confidence            9854

>d3d9ta1 g.52.1.1 (A:260-346) 2MIHB/C-IAP-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: 2MIHB/C-IAP-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.7e-26  Score=175.57  Aligned_cols=73  Identities=44%  Similarity=0.969  Sum_probs=69.3

Q ss_pred             CcCHHHHHhccCCCCCCCC-cCHHHHHHcCceecCCCCCCCCCCeEeecccCceeccccCCCChhhhhcccCCCCccccc
Q psy3967          36 MTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCWFLRR  114 (324)
Q Consensus        36 ~~~e~~RL~SF~~~Wp~~~-~~~~~LA~aGFyy~g~~~~~~~~D~V~C~~C~~~l~~w~~~Ddp~~eH~~~sP~C~f~~~  114 (324)
                      |.++++||+||.+ ||+.. ++++.||+|||||+|.      +|.|+|++|+++|.+|+++|+|+.+|++++|+|+|++.
T Consensus         1 m~~~~~Rl~TF~~-Wp~~~~~~~~~LA~aGFyytg~------~D~v~C~~C~~~l~~W~~~Ddp~~eH~~~~p~C~fv~~   73 (87)
T d3d9ta1           1 MQTHAARMRTFMY-WPSSVPVQPEQLASAGFYYVGR------NDDVKCFCCDGGLRCWESGDDPWVEHAKWFPRCEFLIR   73 (87)
T ss_dssp             GCSHHHHHHGGGG-CCTTSSSCHHHHHHTTEEECSS------TTCEEETTTCCEEECCCTTCCHHHHHHHHCTTBHHHHH
T ss_pred             CccHHHHHHHHhc-CCCCCCcCHHHHHHcCCEECCC------CCEEEeCcCCCEecCcCCCCcchHHHHHHCcCCchhHh
Confidence            6889999999999 99875 6999999999999999      99999999999999999999999999999999999985


Q ss_pred             c
Q psy3967         115 L  115 (324)
Q Consensus       115 ~  115 (324)
                      .
T Consensus        74 ~   74 (87)
T d3d9ta1          74 M   74 (87)
T ss_dssp             H
T ss_pred             h
Confidence            4

>d1i3oe_ g.52.1.1 (E:) BIR domains of XIAP {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of XIAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.9e-25  Score=179.42  Aligned_cols=79  Identities=38%  Similarity=0.789  Sum_probs=73.5

Q ss_pred             cccccCCcCHHHHHhccCCCCCCC-CcCHHHHHHcCceecCCCCCCCCCCeEeecccCceeccccCCCChhhhhcccCCC
Q psy3967          30 CSRKQNMTLECDRLDSFKNSWPLT-YLSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPN  108 (324)
Q Consensus        30 ~~~~~~~~~e~~RL~SF~~~Wp~~-~~~~~~LA~aGFyy~g~~~~~~~~D~V~C~~C~~~l~~w~~~Ddp~~eH~~~sP~  108 (324)
                      +.....|.+|++||+||.+ ||.. .+++++||+|||||+|.      +|.|+||+|+++|.+|+++|+|+.+|++++|+
T Consensus        28 ~P~~~~m~~ee~Rl~TF~~-Wp~~~~~~~~~LA~aGFyytg~------~D~v~Cf~C~~~l~~W~~~DdP~~eH~r~sP~  100 (111)
T d1i3oe_          28 YPRNPAMYSEEARLKSFQN-WPDYAHLTPRELASAGLYYTGI------GDQVQCFACGGKLKNWEPGDRAWSEHRRHFPN  100 (111)
T ss_dssp             CSSCGGGCSHHHHHTTCTT-CCSSCSSCHHHHHHTTEEEEEE------TTEEEETTTCCEECCCCTTCCHHHHHHHHCTT
T ss_pred             CCCCccccCHHHHHHHHHh-CCCccCcCHHHHHHcCCEECCC------CCeEEeCcCCCEeCCCCCCCCHHHHHHHHCcC
Confidence            5566779999999999999 9965 47999999999999999      99999999999999999999999999999999


Q ss_pred             Ccccccc
Q psy3967         109 CWFLRRL  115 (324)
Q Consensus       109 C~f~~~~  115 (324)
                      |+|++..
T Consensus       101 C~fvl~~  107 (111)
T d1i3oe_         101 CFFVLGR  107 (111)
T ss_dssp             CHHHHTC
T ss_pred             Cceeecc
Confidence            9999754

>d1jd5a_ g.52.1.1 (A:) BIR domains of DIAP1 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: BIR domains of DIAP1
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.90  E-value=4.8e-25  Score=176.70  Aligned_cols=77  Identities=32%  Similarity=0.798  Sum_probs=72.4

Q ss_pred             cccCCcCHHHHHhccCCCCCCCC-cCHHHHHHcCceecCCCCCCCCCCeEeecccCceeccccCCCChhhhhcccCCCCc
Q psy3967          32 RKQNMTLECDRLDSFKNSWPLTY-LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCW  110 (324)
Q Consensus        32 ~~~~~~~e~~RL~SF~~~Wp~~~-~~~~~LA~aGFyy~g~~~~~~~~D~V~C~~C~~~l~~w~~~Ddp~~eH~~~sP~C~  110 (324)
                      ...+|.++++||+||.+ ||+.. ++++.||+|||||+|.      +|.|+||+|+++|.+|+++|+|+++|++++|+|+
T Consensus         6 ~~p~~~~~~~Rl~TF~~-wp~~~~~~~~~LA~aGFyytg~------~D~v~Cf~C~~~l~~W~~~D~p~~eH~~~~P~C~   78 (105)
T d1jd5a_           6 QYPEYAIETARLRTFEA-WPRNLKQKPHQLAEAGFFYTGV------GDRVRCFSCGGGLMDWNDNDEPWEQHALWLSQCR   78 (105)
T ss_dssp             SCGGGCSHHHHHHHGGG-CCTTCSSCHHHHHHTTEEECSS------TTCEEETTTCCEEECCCTTCCHHHHHHHHCTTCH
T ss_pred             CCCCccCHHHHHHHHHh-CCCCCCcCHHHHHHcCCEECCC------CCEEEeCccCCCccCCCCCCCHHHHHHHHCcCCc
Confidence            45689999999999999 99865 7999999999999999      9999999999999999999999999999999999


Q ss_pred             ccccc
Q psy3967         111 FLRRL  115 (324)
Q Consensus       111 f~~~~  115 (324)
                      |++..
T Consensus        79 fv~~~   83 (105)
T d1jd5a_          79 FVKLM   83 (105)
T ss_dssp             HHHHH
T ss_pred             chhhh
Confidence            99754

>d2qfaa1 g.52.1.1 (A:5-141) Anti-apoptotic protein survivin {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Inhibitor of apoptosis (IAP) repeat
superfamily: Inhibitor of apoptosis (IAP) repeat
family: Inhibitor of apoptosis (IAP) repeat
domain: Anti-apoptotic protein survivin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=5.1e-24  Score=178.17  Aligned_cols=78  Identities=36%  Similarity=0.681  Sum_probs=69.7

Q ss_pred             cCCcCHHHHHhccCCCCCCCC---cCHHHHHHcCceecCCCCCCCCCCeEeecccCceeccccCCCChhhhhcccCCCCc
Q psy3967          34 QNMTLECDRLDSFKNSWPLTY---LSAKQMAAAGFYFLGKKENGRFSDDVKCIFCGIELGKWVQGDDPLKDHEKWSPNCW  110 (324)
Q Consensus        34 ~~~~~e~~RL~SF~~~Wp~~~---~~~~~LA~aGFyy~g~~~~~~~~D~V~C~~C~~~l~~w~~~Ddp~~eH~~~sP~C~  110 (324)
                      .+|..+++||+||.+ ||+..   +++++||+|||||+|....   +|.|+||+|+++|.+|+++|||+++|++++|+|+
T Consensus         6 ~~~~~~~~Rl~TF~~-WP~~~~~~~~~~~LA~AGFyy~~~~~~---~D~v~Cf~C~~~l~~We~~DdP~~eH~~~~p~C~   81 (137)
T d2qfaa1           6 WQPFLKDHRISTFKN-WPFLEGCACTPERMAEAGFIHCPTENE---PDLAQCFFCFKELEGWEPDDDPIEEHKKHSSGCA   81 (137)
T ss_dssp             TGGGSHHHHHHTCCS-CSCCSSCSSCHHHHHHTTEEECCBTTB---TTCEEETTTCCEECCCCTTCCHHHHHHHHCTTCG
T ss_pred             cccccHHHHHHHHhc-CCCccCCCCCHHHHHhcCceECCCCCC---CCeEEecccCCCcCCCCCCCCHHHHHHHHCcCCc
Confidence            358899999999999 99753   6899999999999775322   8999999999999999999999999999999999


Q ss_pred             ccccc
Q psy3967         111 FLRRL  115 (324)
Q Consensus       111 f~~~~  115 (324)
                      |++..
T Consensus        82 fv~~~   86 (137)
T d2qfaa1          82 FLSVK   86 (137)
T ss_dssp             GGGCC
T ss_pred             eEeee
Confidence            99754

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.84  E-value=0.0017  Score=47.23  Aligned_cols=24  Identities=42%  Similarity=0.946  Sum_probs=21.3

Q ss_pred             cccccccccccccEEEecCCceee
Q psy3967         298 GRLCKICYQREMGVVFLPCGHIVA  321 (324)
Q Consensus       298 ~~~C~iC~~~~~~~~~~PCgH~~~  321 (324)
                      ...|.||++...+.+++||||..+
T Consensus        23 ~~~C~IC~~~~~~~~~~~CgH~fC   46 (79)
T d1fbva4          23 FQLCKICAENDKDVKIEPCGHLMC   46 (79)
T ss_dssp             TTBCTTTSSSBCCEECSSSCCEEC
T ss_pred             CCCCccCCCcCCCeEEeCCCCeee
Confidence            356999999999999999999854

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.97  E-value=0.0024  Score=43.44  Aligned_cols=24  Identities=25%  Similarity=0.459  Sum_probs=21.4

Q ss_pred             cccccccccccccEEEecCCceee
Q psy3967         298 GRLCKICYQREMGVVFLPCGHIVA  321 (324)
Q Consensus       298 ~~~C~iC~~~~~~~~~~PCgH~~~  321 (324)
                      ..+|.||++.-.+.+++||||+.+
T Consensus         6 ~l~C~IC~~~~~~p~~lpCgH~fC   29 (56)
T d1bora_           6 FLRCQQCQAEAKCPKLLPCLHTLC   29 (56)
T ss_dssp             CSSCSSSCSSCBCCSCSTTSCCSB
T ss_pred             CCCCcccCcccCCCEEecCCCHHh
Confidence            468999999999999999999754

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.24  E-value=0.027  Score=38.90  Aligned_cols=25  Identities=24%  Similarity=0.614  Sum_probs=18.7

Q ss_pred             ccccccccccc-----cccEEEecCCceee
Q psy3967         297 DGRLCKICYQR-----EMGVVFLPCGHIVA  321 (324)
Q Consensus       297 ~~~~C~iC~~~-----~~~~~~~PCgH~~~  321 (324)
                      |+..|.||++.     ...+++.||||..+
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc   31 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLC   31 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEE
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhh
Confidence            35689999975     34467789999765

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.85  E-value=0.03  Score=41.13  Aligned_cols=26  Identities=23%  Similarity=0.427  Sum_probs=23.1

Q ss_pred             CccccccccccccccEEEecCCceee
Q psy3967         296 SDGRLCKICYQREMGVVFLPCGHIVA  321 (324)
Q Consensus       296 ~~~~~C~iC~~~~~~~~~~PCgH~~~  321 (324)
                      .+...|.||++.-.+.|.+||||.-+
T Consensus        21 ~~~l~C~IC~~~~~~pv~~~CgH~FC   46 (86)
T d1rmda2          21 VKSISCQICEHILADPVETSCKHLFC   46 (86)
T ss_dssp             HHHTBCTTTCSBCSSEEECTTSCEEE
T ss_pred             ccCcCCccCCcchhcceecCCCChhh
Confidence            34678999999999999999999865

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.63  E-value=0.11  Score=36.98  Aligned_cols=27  Identities=19%  Similarity=0.101  Sum_probs=23.4

Q ss_pred             CCccccccccccccccEEEecCCceee
Q psy3967         295 NSDGRLCKICYQREMGVVFLPCGHIVA  321 (324)
Q Consensus       295 ~~~~~~C~iC~~~~~~~~~~PCgH~~~  321 (324)
                      ..+...|.||++-=.+=|.+||||..+
T Consensus         4 iP~~l~CpIc~~l~~dPv~~~cGhtfc   30 (80)
T d2c2la2           4 IPDYLCGKISFELMREPCITPSGITYD   30 (80)
T ss_dssp             CCSTTBCTTTCSBCSSEEECSSCCEEE
T ss_pred             CCccccCcCcCchhhhhcccCCcCeec
Confidence            346788999999999999999999754

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=88.56  E-value=0.095  Score=36.17  Aligned_cols=22  Identities=32%  Similarity=0.709  Sum_probs=17.4

Q ss_pred             cccccccccccc-EEEecCCcee
Q psy3967         299 RLCKICYQREMG-VVFLPCGHIV  320 (324)
Q Consensus       299 ~~C~iC~~~~~~-~~~~PCgH~~  320 (324)
                      ..|.||++.-.+ ++.+||||..
T Consensus         6 d~C~IC~~~~~~~~~~~~C~H~F   28 (68)
T d1chca_           6 ERCPICLEDPSNYSMALPCLHAF   28 (68)
T ss_dssp             CCCSSCCSCCCSCEEETTTTEEE
T ss_pred             CCCccCCcCccCCcEEeCCCCcC
Confidence            459999987654 6778999964

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=88.17  E-value=0.11  Score=34.58  Aligned_cols=25  Identities=36%  Similarity=0.736  Sum_probs=17.1

Q ss_pred             Cccccccccccccc---cEEEe-cCCcee
Q psy3967         296 SDGRLCKICYQREM---GVVFL-PCGHIV  320 (324)
Q Consensus       296 ~~~~~C~iC~~~~~---~~~~~-PCgH~~  320 (324)
                      ++...|.||++.-.   .++.+ +|||.-
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~F   31 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHGF   31 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEE
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCcc
Confidence            34567999997643   35555 599964

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=87.04  E-value=0.18  Score=35.39  Aligned_cols=26  Identities=15%  Similarity=0.198  Sum_probs=22.9

Q ss_pred             CccccccccccccccEEEecCCceee
Q psy3967         296 SDGRLCKICYQREMGVVFLPCGHIVA  321 (324)
Q Consensus       296 ~~~~~C~iC~~~~~~~~~~PCgH~~~  321 (324)
                      .++..|-||++--+|-|.+||||..+
T Consensus         6 P~~l~CpIc~~~m~dPV~~~cgh~fc   31 (78)
T d1t1ha_           6 PEYFRCPISLELMKDPVIVSTGQTYE   31 (78)
T ss_dssp             SSSSSCTTTSCCCSSEEEETTTEEEE
T ss_pred             CccCCCcCcCchhhCceEccCCCcch
Confidence            35688999999999999999999754

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.24  E-value=0.04  Score=41.24  Aligned_cols=26  Identities=27%  Similarity=0.402  Sum_probs=22.3

Q ss_pred             CccccccccccccccEEEecCCceee
Q psy3967         296 SDGRLCKICYQREMGVVFLPCGHIVA  321 (324)
Q Consensus       296 ~~~~~C~iC~~~~~~~~~~PCgH~~~  321 (324)
                      ++...|.||++.-.+-+.+||||..+
T Consensus        19 ~~~l~CpIC~~~~~~pv~~~CgH~fC   44 (103)
T d1jm7a_          19 QKILECPICLELIKEPVSTKCDHIFC   44 (103)
T ss_dssp             HHHTSCSSSCCCCSSCCBCTTSCCCC
T ss_pred             ccCcCCCccCchhCCeEEcCCCCchh
Confidence            34567999999999999999999755

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.11  E-value=0.079  Score=34.75  Aligned_cols=22  Identities=18%  Similarity=0.625  Sum_probs=15.8

Q ss_pred             cccccccc----cccEEEecCCceee
Q psy3967         300 LCKICYQR----EMGVVFLPCGHIVA  321 (324)
Q Consensus       300 ~C~iC~~~----~~~~~~~PCgH~~~  321 (324)
                      +|.||++.    ...++.+||||...
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c   27 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQIC   27 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCC
T ss_pred             CCcCCChhhhCCCceEEecCCCCccc
Confidence            69999984    23345569999865

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.82  E-value=0.22  Score=37.35  Aligned_cols=23  Identities=22%  Similarity=0.479  Sum_probs=17.7

Q ss_pred             ccccccccc------------------cccEEEecCCceee
Q psy3967         299 RLCKICYQR------------------EMGVVFLPCGHIVA  321 (324)
Q Consensus       299 ~~C~iC~~~------------------~~~~~~~PCgH~~~  321 (324)
                      ..|.||++.                  ...++++||||+..
T Consensus        26 ~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH   66 (114)
T d1v87a_          26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFH   66 (114)
T ss_dssp             CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEEC
T ss_pred             ccccchhheecccccccccccccccccccceEECCCCChhh
Confidence            469999875                  34578899999864

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.88  E-value=0.87  Score=33.40  Aligned_cols=29  Identities=21%  Similarity=0.124  Sum_probs=24.6

Q ss_pred             CCCccccccccccccccEEEecCCceeec
Q psy3967         294 PNSDGRLCKICYQREMGVVFLPCGHIVAC  322 (324)
Q Consensus       294 ~~~~~~~C~iC~~~~~~~~~~PCgH~~~C  322 (324)
                      ...++-+|-||.+-=+|-|.+||||...|
T Consensus        18 ~~P~~f~CPI~~~lm~dPV~~~~~~~ty~   46 (98)
T d1wgma_          18 DACDEFLDPIMSTLMCDPVVLPSSRVTVD   46 (98)
T ss_dssp             SCCTTTBCTTTCSBCSSEEECTTTCCEEE
T ss_pred             CCcHHhCCcCchhHHHHHHhcccccchhh
Confidence            44568899999999999999999986554

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.52  E-value=0.11  Score=38.18  Aligned_cols=27  Identities=26%  Similarity=0.313  Sum_probs=21.8

Q ss_pred             CCccccccccccccccEEEe-cCCceee
Q psy3967         295 NSDGRLCKICYQREMGVVFL-PCGHIVA  321 (324)
Q Consensus       295 ~~~~~~C~iC~~~~~~~~~~-PCgH~~~  321 (324)
                      +.+...|.||++.-.+-|.+ ||||..+
T Consensus        19 l~~~l~C~IC~~~~~~pv~~~~CgH~fC   46 (97)
T d1jm7b_          19 LEKLLRCSRCTNILREPVCLGGCEHIFC   46 (97)
T ss_dssp             HHHTTSCSSSCSCCSSCBCCCSSSCCBC
T ss_pred             hhhcCCCccCCchhhcCceeCCCCCchh
Confidence            34567899999998887765 8999876