Psyllid ID: psy3979

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
MEFLSNLDFDLYQDPTEDGKKVSSPEKLPSSSYNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGAMLFLQALNILPQSKIDVHEALYGPHPSAVRCPEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVTRFAQNQEARNHEISDEEEEEEEEEGIVRCLIFFLIEEKDVQTDVYGRVVEYVDVPKALGDVFEALVEDT
ccccccccccccccccccccccccccccccccccccccEEccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccccccHHHHccccccccccccccccccccccccHHHHHHHHHcccccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccHHHHHHHHHHcccHHHHccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHcccc
ccEEEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccHHHHHHccccccccccccccHcccccHHHHHHHHHHHHHHccccccHHHHHHHHEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccHHHHHHHHHHHHHHHccccccccHHHHccHHcHHHHHcHccHcHccccccccccccccccccHHHHHHHHHHHHcc
meflsnldfdlyqdptedgkkvsspeklpsssynfldriklGDKVVADVVESLTGVYLRSCGIEGAMLFLQALNilpqskidvhealygphpsavrcpeqargldplryipectqlEKRINYTFQDKSFLLQalshptynanritTSYQRLEFLGDAIIDFLVTAYLYenfshlspgeisDIRSAMVNNVTFASYAVRLDLHkhllhdsprlYENVTRFAQNQearnheisdeeeeeeeEEGIVRCLIFFLIEEKDVQTDVYGRVVEYVDVPKALGDVFEALVEDT
meflsnldfdlyqdptedgkkvsspeklpsssynFLDRIKLGDKVVADVVESLTGVYLRSCGIEGAMLFLQALNILPQSKIDVHEALYGPHPSAVRCPEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVTRFAQNQEARNheisdeeeeeeeeEGIVRCLIFFLIEEKDVQTDVYGRVVEYVDVPKALGDVFEALVEDT
MEFLSNLDFDLYQDPTEDGKKVSSPEKLPSSSYNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGAMLFLQALNILPQSKIDVHEALYGPHPSAVRCPEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVTRFAQNQEARNHEISDeeeeeeeeeGIVRCLIFFLIEEKDVQTDVYGRVVEYVDVPKALGDVFEALVEDT
********************************YNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGAMLFLQALNILPQSKIDVHEALYGPHPSAVRCPEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVTR************************IVRCLIFFLIEEKDVQTDVYGRVVEYVDVPKALGDVFEAL****
MEFLSNLDFDLYQDPTE********************RIKLGDKVVADVVESLTGVYLRSCGIEGAMLFLQALNILPQSKIDVHEALYGPHPSA***************IPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVTRFAQNQEARNHEISDEEEEEEEEEGIVRCLIFFLIEEKDVQTDVYGRVVEYVDVPKALGDVFEALVEDT
MEFLSNLDFDLYQDP**************SSSYNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGAMLFLQALNILPQSKIDVHEALYGPHPSAVRCPEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVTRFAQN********************IVRCLIFFLIEEKDVQTDVYGRVVEYVDVPKALGDVFEALVEDT
*EFLSNLDFDLYQDP**************SSSYNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGAMLFLQALNILPQSKIDVHEALYGPHPSAVRCPEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVTRFAQNQEARNH**SDEEEEEEE*EG*************************YVDVPKALGDVFEALVEDT
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MEFLSNLDFDLYQDPTEDGKKVSSPEKLPSSSYNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGAMLFLQALNILPQSKIDVHEALYGPHPSAVRCPEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVTRFxxxxxxxxxxxxxxxxxxxxxEGIVRCLIFFLIEEKDVQTDVYGRVVEYVDVPKALGDVFEALVEDT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query286 2.2.26 [Sep-21-2011]
Q6TV19 1865 Endoribonuclease Dicer OS yes N/A 0.811 0.124 0.399 5e-39
Q9VCU9 2249 Endoribonuclease Dcr-1 OS yes N/A 0.797 0.101 0.358 3e-38
A0MQH0 1917 Endoribonuclease Dicer OS yes N/A 0.874 0.130 0.347 6e-37
Q25BN1 1921 Endoribonuclease Dicer OS yes N/A 0.863 0.128 0.333 1e-36
Q8R418 1916 Endoribonuclease Dicer OS yes N/A 0.874 0.130 0.338 1e-35
Q6TUI4 1923 Endoribonuclease Dicer OS yes N/A 0.874 0.130 0.339 2e-35
Q9UPY3 1922 Endoribonuclease Dicer OS yes N/A 0.867 0.129 0.343 3e-35
B3DLA6 1893 Endoribonuclease Dicer OS yes N/A 0.874 0.132 0.339 4e-35
P34529 1910 Endoribonuclease dcr-1 OS yes N/A 0.821 0.123 0.330 7e-34
Q3EBC81388 Endoribonuclease Dicer ho yes N/A 0.622 0.128 0.396 1e-29
>sp|Q6TV19|DICER_DANRE Endoribonuclease Dicer OS=Danio rerio GN=dicer1 PE=2 SV=2 Back     alignment and function desciption
 Score =  161 bits (407), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 105/263 (39%), Positives = 147/263 (55%), Gaps = 31/263 (11%)

Query: 30   SSSYNFLDRIKLGDKVVADVVESLTGVYLRSCGIEGAMLFLQALN--ILP---QSKIDVH 84
            S SY+      + DK +AD VE+L G YL SCG   A LFL +L   +LP   QS     
Sbjct: 1519 SISYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPPEKQSSGGSA 1578

Query: 85   EALYGPHPSAVRC----PEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYN 140
            E  YG      RC    P+  R L+ L  I      E +INYTF++K++LLQA +H +Y+
Sbjct: 1579 ELQYGWLKIPPRCMFEHPDAERTLNHL--ISGFLNFESKINYTFKNKAYLLQAFTHASYH 1636

Query: 141  ANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLD 200
             N IT  YQRLEFLGDAI+D+L+T +LYE+    SPG ++D+RSA+VNN  FAS AV+ D
Sbjct: 1637 YNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYD 1696

Query: 201  LHKHLLHDSPRLYENVTRFAQNQEARNHEISDEEEEEEEEEGIVRCLIFFLIEEKDVQTD 260
             HK+    SP L+  +  F Q Q  +N           E +G         ++ +  +++
Sbjct: 1697 YHKYFKAVSPELFHVIDDFVQFQLEKN-----------EMQG---------MDSELRRSE 1736

Query: 261  VYGRVVEYVDVPKALGDVFEALV 283
                  E ++VPKA+GD+FE+L 
Sbjct: 1737 EDEEKEEDIEVPKAMGDIFESLA 1759
Required for formation of the RNA induced silencing complex (RISC). Component of the RISC loading complex (RLC), also known as the micro-RNA (miRNA) loading complex (miRLC), which is composed of dicer1, eif2c2/ago2 and tarbp2. Within the RLC/miRLC, dicer1 and tarbp2 are required to process precursor miRNAs (pre-miRNAs) to mature miRNAs and then load them onto eif2c2/ago2. eif2c2/ago2 bound to the mature miRNA constitutes the minimal RISC and may subsequently dissociate from dicer1 and tarbp2. Also cleaves double-stranded RNA to produce short interfering RNAs (siRNAs) which target the selective destruction of complementary RNAs.
Danio rerio (taxid: 7955)
EC: 3EC: .EC: 1EC: .EC: 2EC: 6EC: .EC: -
>sp|Q9VCU9|DCR1_DROME Endoribonuclease Dcr-1 OS=Drosophila melanogaster GN=Dcr-1 PE=1 SV=1 Back     alignment and function description
>sp|A0MQH0|DICER_CRIGR Endoribonuclease Dicer OS=Cricetulus griseus GN=DICER1 PE=2 SV=3 Back     alignment and function description
>sp|Q25BN1|DICER_CHICK Endoribonuclease Dicer OS=Gallus gallus GN=DICER1 PE=2 SV=3 Back     alignment and function description
>sp|Q8R418|DICER_MOUSE Endoribonuclease Dicer OS=Mus musculus GN=Dicer1 PE=1 SV=3 Back     alignment and function description
>sp|Q6TUI4|DICER_BOVIN Endoribonuclease Dicer OS=Bos taurus GN=DICER1 PE=2 SV=3 Back     alignment and function description
>sp|Q9UPY3|DICER_HUMAN Endoribonuclease Dicer OS=Homo sapiens GN=DICER1 PE=1 SV=3 Back     alignment and function description
>sp|B3DLA6|DICER_XENTR Endoribonuclease Dicer OS=Xenopus tropicalis GN=dicer1 PE=2 SV=2 Back     alignment and function description
>sp|P34529|DCR1_CAEEL Endoribonuclease dcr-1 OS=Caenorhabditis elegans GN=dcr-1 PE=1 SV=3 Back     alignment and function description
>sp|Q3EBC8|DCL2_ARATH Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana GN=At3g03300 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query286
332029751 1257 Endoribonuclease Dcr-1 [Acromyrmex echin 0.758 0.172 0.473 5e-51
380026731 1362 PREDICTED: LOW QUALITY PROTEIN: endoribo 0.762 0.160 0.432 2e-49
307169911 506 Endoribonuclease Dcr-1 [Camponotus flori 0.758 0.428 0.452 6e-49
307198394 1479 Endoribonuclease dcr-1 [Harpegnathos sal 0.762 0.147 0.448 2e-48
340712553 1488 PREDICTED: endoribonuclease Dicer-like [ 0.762 0.146 0.423 3e-48
350399948 1490 PREDICTED: endoribonuclease Dicer-like [ 0.762 0.146 0.423 9e-48
406034947 1649 Dicer 2 [Blattella germanica] 0.807 0.140 0.424 2e-47
167234451 1623 Dicer-2 [Tribolium castaneum] gi|2700028 0.793 0.139 0.409 4e-47
383856609 1441 PREDICTED: endoribonuclease Dicer-like [ 0.751 0.149 0.419 2e-46
345494561 1450 PREDICTED: endoribonuclease Dicer [Nason 0.874 0.172 0.409 7e-46
>gi|332029751|gb|EGI69620.1| Endoribonuclease Dcr-1 [Acromyrmex echinatior] Back     alignment and taxonomy information
 Score =  207 bits (526), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 115/243 (47%), Positives = 157/243 (64%), Gaps = 26/243 (10%)

Query: 41   LGDKVVADVVESLTGVYLRSCGIEGAMLFLQALNILPQSKIDVHEALYGPHPSAVRCPEQ 100
            L DK VAD VE+L GVYL++  I+GA   L+   ILP  KID+   L G   S  + P  
Sbjct: 936  LSDKTVADSVEALIGVYLKNNHIKGAAKLLKWFGILPDVKIDM---LLG---SISQNPVI 989

Query: 101  ARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIID 160
              G DP  Y+P    LE +I Y F++++FLLQA +HP+Y AN IT  YQRLEFLGDAI+D
Sbjct: 990  GVG-DPNYYMPWADTLESKIGYKFKNRAFLLQAFTHPSYTANGITECYQRLEFLGDAILD 1048

Query: 161  FLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVTRFA 220
            FL+T Y+YEN  +LSPG+++D+RSA+VNN+TFA  +VR  LH  LL  +P+L+E +  F 
Sbjct: 1049 FLITCYIYENDVNLSPGDLTDLRSALVNNITFACLSVRHGLHTALLAYAPKLHEIIDCFV 1108

Query: 221  QNQEARNHEISDEEEEEEEEEGIVRCLIFFLIEEKDVQTDVYGRVVEYVDVPKALGDVFE 280
            + QE R++ ++DE             L++ LIEE +        + EYVDVPK LGD+FE
Sbjct: 1109 RFQEERDYVVNDE-------------LLYVLIEEDECN------ITEYVDVPKVLGDLFE 1149

Query: 281  ALV 283
            +L+
Sbjct: 1150 SLI 1152

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|380026731|ref|XP_003697097.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer-like [Apis florea] Back     alignment and taxonomy information
>gi|307169911|gb|EFN62420.1| Endoribonuclease Dcr-1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|307198394|gb|EFN79336.1| Endoribonuclease dcr-1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|340712553|ref|XP_003394821.1| PREDICTED: endoribonuclease Dicer-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350399948|ref|XP_003485689.1| PREDICTED: endoribonuclease Dicer-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|406034947|emb|CCF23094.1| Dicer 2 [Blattella germanica] Back     alignment and taxonomy information
>gi|167234451|ref|NP_001107840.1| Dicer-2 [Tribolium castaneum] gi|270002830|gb|EEZ99277.1| hypothetical protein TcasGA2_TC001108 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|383856609|ref|XP_003703800.1| PREDICTED: endoribonuclease Dicer-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|345494561|ref|XP_001602524.2| PREDICTED: endoribonuclease Dicer [Nasonia vitripennis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query286
UNIPROTKB|B3KRG4820 DICER1 "Endoribonuclease Dicer 0.388 0.135 0.522 4.7e-38
ZFIN|ZDB-GENE-030131-34451865 dicer1 "Dicer1, Dcr-1 homolog 0.685 0.105 0.449 2.1e-37
FB|FBgn00390162249 Dcr-1 "Dicer-1" [Drosophila me 0.465 0.059 0.459 7.1e-37
UNIPROTKB|A0MQH01917 DICER1 "Endoribonuclease Dicer 0.447 0.066 0.476 8.3e-37
UNIPROTKB|B3DLA61893 dicer1 "Endoribonuclease Dicer 0.447 0.067 0.484 1.6e-36
UNIPROTKB|Q6TUI41923 DICER1 "Endoribonuclease Dicer 0.447 0.066 0.492 1.7e-36
UNIPROTKB|Q9UPY31922 DICER1 "Endoribonuclease Dicer 0.388 0.057 0.522 2.2e-36
UNIPROTKB|F1MCQ51920 DICER1 "Endoribonuclease Dicer 0.388 0.057 0.522 3.5e-36
MGI|MGI:21771781916 Dicer1 "dicer 1, ribonuclease 0.388 0.057 0.513 5.7e-36
FB|FBgn0034246 1722 Dcr-2 "Dicer-2" [Drosophila me 0.706 0.117 0.375 1.3e-35
UNIPROTKB|B3KRG4 DICER1 "Endoribonuclease Dicer" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
 Score = 301 (111.0 bits), Expect = 4.7e-38, Sum P(3) = 4.7e-38
 Identities = 58/111 (52%), Positives = 80/111 (72%)

Query:   117 EKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSP 176
             EK+INY F++K++LLQA +H +Y+ N IT  YQRLEFLGDAI+D+L+T +LYE+    SP
Sbjct:   568 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 627

Query:   177 GEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVTRFAQNQEARN 227
             G ++D+RSA+VNN  FAS AV+ D HK+    SP L+  +  F Q Q  +N
Sbjct:   628 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKN 678
GO:0003725 "double-stranded RNA binding" evidence=IEA
GO:0004525 "ribonuclease III activity" evidence=IEA
GO:0006396 "RNA processing" evidence=IEA
ZFIN|ZDB-GENE-030131-3445 dicer1 "Dicer1, Dcr-1 homolog (Drosophila)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0039016 Dcr-1 "Dicer-1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|A0MQH0 DICER1 "Endoribonuclease Dicer" [Cricetulus griseus (taxid:10029)] Back     alignment and assigned GO terms
UNIPROTKB|B3DLA6 dicer1 "Endoribonuclease Dicer" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|Q6TUI4 DICER1 "Endoribonuclease Dicer" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UPY3 DICER1 "Endoribonuclease Dicer" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1MCQ5 DICER1 "Endoribonuclease Dicer" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:2177178 Dicer1 "dicer 1, ribonuclease type III" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
FB|FBgn0034246 Dcr-2 "Dicer-2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.260.691

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
COG0571235 COG0571, Rnc, dsRNA-specific ribonuclease [Transcr 1e-29
TIGR02191220 TIGR02191, RNaseIII, ribonuclease III, bacterial 2e-28
PRK00102229 PRK00102, rnc, ribonuclease III; Reviewed 2e-28
cd00593133 cd00593, RIBOc, RIBOc 3e-28
smart00535129 smart00535, RIBOc, Ribonuclease III family 2e-22
pfam0063691 pfam00636, Ribonuclease_3, Ribonuclease III domain 4e-18
PRK12371235 PRK12371, PRK12371, ribonuclease III; Reviewed 1e-12
PRK14718 467 PRK14718, PRK14718, ribonuclease III; Provisional 2e-11
PRK12372 413 PRK12372, PRK12372, ribonuclease III; Reviewed 4e-11
>gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription] Back     alignment and domain information 
 Score =  111 bits (280), Expect = 1e-29
 Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 1/95 (1%)

Query: 114 TQLEKRINYTFQDKSFLLQALSHPTY-NANRITTSYQRLEFLGDAIIDFLVTAYLYENFS 172
             LEK++ YTF+DK  L QAL+H +Y N ++   + +RLEFLGDA++  +V  YL++ + 
Sbjct: 9   EALEKKLGYTFKDKELLEQALTHRSYANEHKAVENNERLEFLGDAVLGLVVAEYLFKKYP 68

Query: 173 HLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLH 207
           +L  GE+S +R+A+V+  + A  A  L L  +L  
Sbjct: 69  NLPEGELSKLRAALVSEESLAEIARELGLGDYLRL 103

Length = 235
>gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial Back     alignment and domain information
>gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed Back     alignment and domain information
>gnl|CDD|238333 cd00593, RIBOc, RIBOc Back     alignment and domain information
>gnl|CDD|197778 smart00535, RIBOc, Ribonuclease III family Back     alignment and domain information
>gnl|CDD|216036 pfam00636, Ribonuclease_3, Ribonuclease III domain Back     alignment and domain information
>gnl|CDD|171444 PRK12371, PRK12371, ribonuclease III; Reviewed Back     alignment and domain information
>gnl|CDD|173181 PRK14718, PRK14718, ribonuclease III; Provisional Back     alignment and domain information
>gnl|CDD|237081 PRK12372, PRK12372, ribonuclease III; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 286
PRK12371235 ribonuclease III; Reviewed 99.97
COG0571235 Rnc dsRNA-specific ribonuclease [Transcription] 99.97
PRK12372 413 ribonuclease III; Reviewed 99.96
PRK14718 467 ribonuclease III; Provisional 99.96
PRK00102229 rnc ribonuclease III; Reviewed 99.96
TIGR02191220 RNaseIII ribonuclease III, bacterial. This family 99.95
KOG1817|consensus533 99.92
PF14622128 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_ 99.92
cd00593133 RIBOc RIBOc. Ribonuclease III C terminal domain. T 99.91
smart00535129 RIBOc Ribonuclease III family. 99.9
PF00636114 Ribonuclease_3: Ribonuclease III domain; InterPro: 99.89
KOG0701|consensus1606 99.88
KOG0701|consensus 1606 99.58
KOG1817|consensus 533 99.29
KOG3769|consensus333 98.11
PF14622128 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_ 98.04
cd00593133 RIBOc RIBOc. Ribonuclease III C terminal domain. T 98.0
PRK12371235 ribonuclease III; Reviewed 97.86
smart00535129 RIBOc Ribonuclease III family. 97.77
COG0571235 Rnc dsRNA-specific ribonuclease [Transcription] 97.73
PF00636114 Ribonuclease_3: Ribonuclease III domain; InterPro: 97.69
PRK12372413 ribonuclease III; Reviewed 97.62
PRK14718 467 ribonuclease III; Provisional 97.62
TIGR02191220 RNaseIII ribonuclease III, bacterial. This family 97.58
PRK00102229 rnc ribonuclease III; Reviewed 97.56
COG1939132 Ribonuclease III family protein [Replication, reco 94.96
>PRK12371 ribonuclease III; Reviewed Back     alignment and domain information 
Probab=99.97  E-value=9.8e-31  Score=237.57  Aligned_cols=97  Identities=35%  Similarity=0.506  Sum_probs=91.8

Q ss_pred             hHHHHHHHhCCCcCChHHHHHHhhCCCCCCCCCCcchhHHHHhhHHHHHHHHHHHHHHhCCCCChhhhHHHHHHhhchHH
Q psy3979         112 ECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVT  191 (286)
Q Consensus       112 ~l~~le~~LGY~Fk~~~LL~eALTH~S~~~~~~~~~yeRLEfLGDAVL~~~vs~~Ly~~~p~~~~g~Lt~lrs~lVsN~~  191 (286)
                      .+..||+++||+|+|+.||.+||||+|+... ...+|||||||||+||+++|+.+||.+||+.++|.||.+|+.+|||.+
T Consensus        11 ~~~~le~~lgy~F~~~~Ll~~AlTH~S~~~~-~~~~~eRLEFLGDavL~l~vs~~Lf~~~p~~~eG~Lt~~rs~lV~n~~   89 (235)
T PRK12371         11 TASILEERTGHRFANKERLERALTHSSARAS-KQGNYERLEFLGDRVLGLCVAEMLFEAFPDASEGELSVRLNQLVNAET   89 (235)
T ss_pred             HHHHHHHHHCCCCCCHHHHHHHHcCcCcccC-CccchHhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhChHH
Confidence            4788999999999999999999999999764 346999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCchhhhccCC
Q psy3979         192 FASYAVRLDLHKHLLHDS  209 (286)
Q Consensus       192 LA~ia~~lgL~~~I~~~s  209 (286)
                      |+.+|.++||++||+.++
T Consensus        90 La~ia~~lgL~~~i~~~~  107 (235)
T PRK12371         90 CAAIADEIGLHDLIRTGS  107 (235)
T ss_pred             HHHHHHHCCcHHHhccCc
Confidence            999999999999999875

>COG0571 Rnc dsRNA-specific ribonuclease [Transcription] Back     alignment and domain information
>PRK12372 ribonuclease III; Reviewed Back     alignment and domain information
>PRK14718 ribonuclease III; Provisional Back     alignment and domain information
>PRK00102 rnc ribonuclease III; Reviewed Back     alignment and domain information
>TIGR02191 RNaseIII ribonuclease III, bacterial Back     alignment and domain information
>KOG1817|consensus Back     alignment and domain information
>PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B Back     alignment and domain information
>cd00593 RIBOc RIBOc Back     alignment and domain information
>smart00535 RIBOc Ribonuclease III family Back     alignment and domain information
>PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3 Back     alignment and domain information
>KOG0701|consensus Back     alignment and domain information
>KOG0701|consensus Back     alignment and domain information
>KOG1817|consensus Back     alignment and domain information
>KOG3769|consensus Back     alignment and domain information
>PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B Back     alignment and domain information
>cd00593 RIBOc RIBOc Back     alignment and domain information
>PRK12371 ribonuclease III; Reviewed Back     alignment and domain information
>smart00535 RIBOc Ribonuclease III family Back     alignment and domain information
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription] Back     alignment and domain information
>PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3 Back     alignment and domain information
>PRK12372 ribonuclease III; Reviewed Back     alignment and domain information
>PRK14718 ribonuclease III; Provisional Back     alignment and domain information
>TIGR02191 RNaseIII ribonuclease III, bacterial Back     alignment and domain information
>PRK00102 rnc ribonuclease III; Reviewed Back     alignment and domain information
>COG1939 Ribonuclease III family protein [Replication, recombination, and repair] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
2eb1_A200 Crystal Structure Of The C-Terminal Rnase Iii Domai 6e-29
3c4t_A265 Structure Of Rnaseiiib And Dsrna Binding Domains Of 1e-28
3c4b_A265 Structure Of Rnaseiiib And Dsrna Binding Domains Of 7e-28
3n3w_A248 2.2 Angstrom Resolution Crystal Structure Of Nuclea 4e-14
3o2r_A170 Structural Flexibility In Region Involved In Dimer 5e-14
3o2r_D144 Structural Flexibility In Region Involved In Dimer 7e-14
1rc7_A220 Crystal Structure Of Rnase Iii Mutant E110k From Aq 4e-11
1yyk_A221 Crystal Structure Of Rnase Iii From Aquifex Aeolicu 4e-11
1yyo_A221 Crystal Structure Of Rnase Iii Mutant E110k From Aq 4e-11
1yz9_A221 Crystal Structure Of Rnase Iii Mutant E110q From Aq 4e-11
1jfz_A154 Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii En 7e-11
1i4s_A147 Crystal Structure Of Rnase Iii Endonuclease Domain 7e-11
2ez6_A221 Crystal Structure Of Aquifex Aeolicus Rnase Iii (d4 2e-10
1o0w_A252 Crystal Structure Of Ribonuclease Iii (Tm1102) From 2e-07
3rv0_A341 Crystal Structure Of K. Polysporus Dcr1 Without The 2e-05
3rv1_A246 Crystal Structure Of The N-Terminal And Rnase Iii D 3e-05
2a11_A242 Crystal Structure Of Nuclease Domain Of Ribonuclase 6e-05
>pdb|2EB1|A Chain A, Crystal Structure Of The C-Terminal Rnase Iii Domain Of Human Dicer Length = 200 Back     alignment and structure 
Iteration: 1

 Score =  124 bits (311), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 69/168 (41%), Positives = 103/168 (61%), Gaps = 20/168 (11%)
Query: 116 LEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLS 175
            EK+INY F++K++LLQA +H +Y+ N IT  YQRLEFLGDAI+D+L+T +LYE+    S
Sbjct: 11  FEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHS 70
Query: 176 PGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVTRFAQNQEARNHEISDXXX 235
           PG ++D+RSA+VNN  FAS AV+ D HK+    SP L+  +  F Q Q  +N E+     
Sbjct: 71  PGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKN-EMQG--- 126
Query: 236 XXXXXXGIVRCLIFFLIEEKDVQTDVYGRVVEYVDVPKALGDVFEALV 283
                           ++ +  +++      E ++VPKA+GD+FE+L 
Sbjct: 127 ----------------MDSELRRSEEDEEKEEDIEVPKAMGDIFESLA 158
>pdb|3C4T|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse Dicer Length = 265 Back     alignment and structure
>pdb|3C4B|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse Dicer Length = 265 Back     alignment and structure
>pdb|3N3W|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Nuclease Domain Ribonuclase Iii (Rnc) From Campylobacter Jejuni Length = 248 Back     alignment and structure
>pdb|3O2R|A Chain A, Structural Flexibility In Region Involved In Dimer Formation Of Nuclease Domain Of Ribonuclase Iii (Rnc) From Campylobacter Jejuni Length = 170 Back     alignment and structure
>pdb|1RC7|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex Aeolicus Complexed With Ds-Rna At 2.15 Angstrom Resolution Length = 220 Back     alignment and structure
>pdb|1YYK|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus Complexed With Double-Stranded Rna At 2.5-Angstrom Resolution Length = 221 Back     alignment and structure
>pdb|1YYO|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex Aeolicus Complexed With Double-stranded Rna At 2.9- Angstrom Resolution Length = 221 Back     alignment and structure
>pdb|1YZ9|A Chain A, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex Aeolicus Complexed With Double Stranded Rna At 2.1- Angstrom Resolution Length = 221 Back     alignment and structure
>pdb|1JFZ|A Chain A, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.10 Angstrom Resolution Length = 154 Back     alignment and structure
>pdb|1I4S|A Chain A, Crystal Structure Of Rnase Iii Endonuclease Domain From Aquifex Aeolicus At 2.15 Angstrom Resolution Length = 147 Back     alignment and structure
>pdb|2EZ6|A Chain A, Crystal Structure Of Aquifex Aeolicus Rnase Iii (d44n) Complexed With Product Of Double-stranded Rna Processing Length = 221 Back     alignment and structure
>pdb|1O0W|A Chain A, Crystal Structure Of Ribonuclease Iii (Tm1102) From Thermotoga Maritima At 2.0 A Resolution Length = 252 Back     alignment and structure
>pdb|3RV0|A Chain A, Crystal Structure Of K. Polysporus Dcr1 Without The C-Terminal Dsrbd Length = 341 Back     alignment and structure
>pdb|3RV1|A Chain A, Crystal Structure Of The N-Terminal And Rnase Iii Domains Of K. Polysporus Dcr1 E224q Mutant Length = 246 Back     alignment and structure
>pdb|2A11|A Chain A, Crystal Structure Of Nuclease Domain Of Ribonuclase Iii From Mycobacterium Tuberculosis Length = 242 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query286
3c4b_A265 Endoribonuclease dicer; RNAse, dsRNA binding prote 3e-53
2nug_A221 Ribonuclease III, RNAse III; dsRNA, RNA interferen 1e-27
1o0w_A252 Ribonuclease III, RNAse III; TM1102, structural ge 1e-27
3n3w_A248 Ribonuclease III; nuclease domain, ribonuclase III 2e-27
3o2r_A170 Ribonuclease III; structural genomics, center for 3e-27
2a11_A242 Ribonuclease III, RNAse III; nuclease domain, stru 2e-25
3rv0_A341 K. polysporus DCR1; RNAse III enzyme, RNA binding 3e-23
2qvw_A 756 GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral 1e-22
2qvw_A756 GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral 2e-19
3rv1_A246 K. polysporus DCR1; RNAse III enzyme, RNA binding 2e-22
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265 Back     alignment and structure
 Score =  173 bits (440), Expect = 3e-53
 Identities = 74/186 (39%), Positives = 106/186 (56%), Gaps = 22/186 (11%)

Query: 98  PEQARGLDPLRYIPECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDA 157
           P+  + L+ L  I      EK+INY F++K++LLQA +H +Y+ N IT  YQRLEFLGDA
Sbjct: 2   PDAEKTLNHL--ISGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDA 59

Query: 158 IIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENVT 217
           I+D+L+T +LYE+    SPG ++D+RSA+VNN  FAS AV+ D HK+    SP L+  + 
Sbjct: 60  ILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVID 119

Query: 218 RFAQNQEARNHEISDEEEEEEEEEGIVRCLIFFLIEEKDVQTDVYGRVVEYVDVPKALGD 277
            F + Q  +N     + E    EE                         E ++VPKA+GD
Sbjct: 120 DFVKFQLEKNEMQGMDSELRRSEED--------------------EEKEEDIEVPKAMGD 159

Query: 278 VFEALV 283
           +FE+L 
Sbjct: 160 IFESLA 165
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221 Back     alignment and structure
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252 Back     alignment and structure
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248 Back     alignment and structure
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* Length = 170 Back     alignment and structure
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242 Back     alignment and structure
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341 Back     alignment and structure
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 Back     alignment and structure
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Length = 756 Back     alignment and structure
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora} Length = 246 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query286
3c4b_A265 Endoribonuclease dicer; RNAse, dsRNA binding prote 100.0
3o2r_A170 Ribonuclease III; structural genomics, center for 99.97
2qvw_A756 GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral 99.97
3n3w_A248 Ribonuclease III; nuclease domain, ribonuclase III 99.96
2nug_A221 Ribonuclease III, RNAse III; dsRNA, RNA interferen 99.96
3rv1_A246 K. polysporus DCR1; RNAse III enzyme, RNA binding 99.96
1o0w_A252 Ribonuclease III, RNAse III; TM1102, structural ge 99.95
2a11_A242 Ribonuclease III, RNAse III; nuclease domain, stru 99.95
3rv0_A341 K. polysporus DCR1; RNAse III enzyme, RNA binding 99.94
2qvw_A 756 GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral 99.82
1u61_A138 Hypothetical protein; structural genomics, PSI, pr 99.57
2gsl_A137 Hypothetical protein; alpha-helical protein, struc 99.44
3o2r_A170 Ribonuclease III; structural genomics, center for 98.07
3n3w_A248 Ribonuclease III; nuclease domain, ribonuclase III 97.75
3c4b_A265 Endoribonuclease dicer; RNAse, dsRNA binding prote 97.63
1o0w_A252 Ribonuclease III, RNAse III; TM1102, structural ge 97.57
2a11_A242 Ribonuclease III, RNAse III; nuclease domain, stru 97.54
1u61_A138 Hypothetical protein; structural genomics, PSI, pr 97.52
2nug_A221 Ribonuclease III, RNAse III; dsRNA, RNA interferen 97.38
3rv1_A246 K. polysporus DCR1; RNAse III enzyme, RNA binding 97.29
2gsl_A137 Hypothetical protein; alpha-helical protein, struc 97.27
3rv0_A341 K. polysporus DCR1; RNAse III enzyme, RNA binding 97.21
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Back     alignment and structure
Probab=100.00  E-value=1.6e-34  Score=263.83  Aligned_cols=156  Identities=45%  Similarity=0.714  Sum_probs=125.4

Q ss_pred             hhHHHHHHHhCCCcCChHHHHHHhhCCCCCCCCCCcchhHHHHhhHHHHHHHHHHHHHHhCCCCChhhhHHHHHHhhchH
Q psy3979         111 PECTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNV  190 (286)
Q Consensus       111 ~~l~~le~~LGY~Fk~~~LL~eALTH~S~~~~~~~~~yeRLEfLGDAVL~~~vs~~Ly~~~p~~~~g~Lt~lrs~lVsN~  190 (286)
                      ..+..||++|||+|+|+.||.+||||+||..+....|||||||||||||+++|++|||.+||+.++|.||.+|+++|||.
T Consensus        13 ~~l~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~~~~neRLEfLGDaVL~l~v~~~L~~~~p~~~~g~Lt~lrs~lV~~~   92 (265)
T 3c4b_A           13 SGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNT   92 (265)
T ss_dssp             TTHHHHHHHHTCCCSSHHHHHHHHBCTTCTTCCSSCCSHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHSSHH
T ss_pred             HHHHHHHHHhCCccCCHHHHHHHhcCcCcCCCCCCCchHhHHHHhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhhH
Confidence            45789999999999999999999999999765445799999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCchhhhccCCchHHHHHHHHHHHHHhhcccCCchhhHHHHhhhHHHHhHHHhhhhcccccccccccccccC
Q psy3979         191 TFASYAVRLDLHKHLLHDSPRLYENVTRFAQNQEARNHEISDEEEEEEEEEGIVRCLIFFLIEEKDVQTDVYGRVVEYVD  270 (286)
Q Consensus       191 ~LA~ia~~lgL~~~I~~~s~~l~~~i~~f~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  270 (286)
                      +||.+|+++||++||++.++.+...|.+|++.....++.....+.              +.....+.    .  ......
T Consensus        93 ~La~~a~~lgl~~~l~~~~~~l~~~i~~f~~~~~~~~~~~~~~~~--------------l~~~~~~~----~--~~~~~~  152 (265)
T 3c4b_A           93 IFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSE--------------LRRSEEDE----E--KEEDIE  152 (265)
T ss_dssp             HHHHHHHHTTGGGTCBCCCHHHHHHHHHHHHHHHHHHC--------------------------------------CCSC
T ss_pred             HHHHHHHHcChHHHHHhcChhHHHHHHHHHHHHhhhhhhcchhHH--------------hhhcchhh----h--hhcccc
Confidence            999999999999999999999999999999863322211100000              00000000    0  123456


Q ss_pred             CCccchhHHHHHhccC
Q psy3979         271 VPKALGDVFEALVEDT  286 (286)
Q Consensus       271 ~PK~L~Dv~Esi~GAI  286 (286)
                      .||+|+|+|||++|||
T Consensus       153 ~~~~laD~~EAliGAi  168 (265)
T 3c4b_A          153 VPKAMGDIFESLAGAI  168 (265)
T ss_dssp             CCHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHhhhe
Confidence            8999999999999997
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* Back     alignment and structure
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Back     alignment and structure
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Back     alignment and structure
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Back     alignment and structure
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora} Back     alignment and structure
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Back     alignment and structure
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Back     alignment and structure
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Back     alignment and structure
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A Back     alignment and structure
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1 Back     alignment and structure
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp} Back     alignment and structure
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B* Back     alignment and structure
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Back     alignment and structure
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Back     alignment and structure
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Back     alignment and structure
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Back     alignment and structure
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1 Back     alignment and structure
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Back     alignment and structure
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora} Back     alignment and structure
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp} Back     alignment and structure
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 286
d2nuga1148 a.149.1.1 (A:3-150) RNase III endonuclease catalyt 1e-16
d1o0wa1169 a.149.1.1 (A:-1-167) RNase III endonuclease cataly 3e-14
d1u61a_127 a.149.1.1 (A:) Hypothetical protein BC0111 {Bacill 8e-11
>d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} Length = 148 Back     information, alignment and structure

class: All alpha proteins
fold: RNase III domain-like
superfamily: RNase III domain-like
family: RNase III catalytic domain-like
domain: RNase III endonuclease catalytic domain
species: Aquifex aeolicus [TaxId: 63363]

 Score = 73.0 bits (178), Expect = 1e-16
 Identities = 34/102 (33%), Positives = 61/102 (59%), Gaps = 3/102 (2%)

Query: 115 QLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHL 174
           QLEK++ YTF+DKS L +AL+H +Y+       Y+ LEFLGDA+++F +   L +   + 
Sbjct: 4   QLEKKLGYTFKDKSLLEKALTHVSYSKKE---HYETLEFLGDALVNFFIVDLLVQYSPNK 60

Query: 175 SPGEISDIRSAMVNNVTFASYAVRLDLHKHLLHDSPRLYENV 216
             G +S +++ +++   F   A +L+LHK +     ++ E +
Sbjct: 61  REGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETI 102
>d1o0wa1 a.149.1.1 (A:-1-167) RNase III endonuclease catalytic domain {Thermotoga maritima [TaxId: 2336]} Length = 169 Back     information, alignment and structure
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} Length = 127 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query286
d2nuga1148 RNase III endonuclease catalytic domain {Aquifex a 99.97
d1o0wa1169 RNase III endonuclease catalytic domain {Thermotog 99.97
d1u61a_127 Hypothetical protein BC0111 {Bacillus cereus [TaxI 99.71
d1o0wa1169 RNase III endonuclease catalytic domain {Thermotog 98.1
d1u61a_127 Hypothetical protein BC0111 {Bacillus cereus [TaxI 97.86
d2nuga1148 RNase III endonuclease catalytic domain {Aquifex a 97.64
>d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: All alpha proteins
fold: RNase III domain-like
superfamily: RNase III domain-like
family: RNase III catalytic domain-like
domain: RNase III endonuclease catalytic domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.97  E-value=2e-32  Score=228.65  Aligned_cols=93  Identities=35%  Similarity=0.630  Sum_probs=89.2

Q ss_pred             HHHHHHHhCCCcCChHHHHHHhhCCCCCCCCCCcchhHHHHhhHHHHHHHHHHHHHHhCCCCChhhhHHHHHHhhchHHH
Q psy3979         113 CTQLEKRINYTFQDKSFLLQALSHPTYNANRITTSYQRLEFLGDAIIDFLVTAYLYENFSHLSPGEISDIRSAMVNNVTF  192 (286)
Q Consensus       113 l~~le~~LGY~Fk~~~LL~eALTH~S~~~~~~~~~yeRLEfLGDAVL~~~vs~~Ly~~~p~~~~g~Lt~lrs~lVsN~~L  192 (286)
                      ++++|++|||+|+|+.||.+|||||||..   ..+|||||||||+||+++++.++|.+||+.++|.||.+|+.+|||.+|
T Consensus         2 l~~le~~igy~F~n~~LL~~Alth~S~~~---~~~~erLeflGDavl~~~v~~~l~~~~p~~~~g~lt~~r~~lvsn~~L   78 (148)
T d2nuga1           2 LEQLEKKLGYTFKDKSLLEKALTHVSYSK---KEHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFF   78 (148)
T ss_dssp             HHHHHHHHTCCCSSHHHHHHHHBCTTTCS---SSCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHHH
T ss_pred             HHHHHHHHCCccCCHHHHHHHhcCcCcCC---CcchHHHHHHHHHHHhhhhHHHHHhhCCCcchHHHHHHHHHhhhhhHh
Confidence            67999999999999999999999999975   478999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCchhhhccC
Q psy3979         193 ASYAVRLDLHKHLLHD  208 (286)
Q Consensus       193 A~ia~~lgL~~~I~~~  208 (286)
                      |.+|.++||++||+.+
T Consensus        79 a~~a~~lgl~~~i~~~   94 (148)
T d2nuga1          79 NLLAQKLELHKFIRIK   94 (148)
T ss_dssp             HHHHHTTTGGGTCBSC
T ss_pred             hhHHHHhhHHHHHHhc
Confidence            9999999999999764
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure