Psyllid ID: psy3988

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280---
MECNLFNNTCTPSYDMNVSRENETYQYCGEHFQSFQMSYDHYHGYISLFVCIFGIVANTLNIIVLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLPIYVTSKLKSRIVLLNQLDNNAVNYSVHPGGNQSDHNVTLYDETNSYNATLYFIDLVDYNLTNEIKLSITLSILAGTKVTTMSPYMTRPTRTTPPCILSTSSTTI
cccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcEEEEEEEccccccccEEEEEcccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHcccccccccccccccccccc
cccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccHEEEEEEEEccEcccccccccEEEEEccccccccccEEEEEEccccccEEEEEEEEEHHHHHccHHHHHHHHHHHHHHHcccccccccccccccEEEEEEEEcc
mecnlfnntctpsydmnvsrenetyQYCGEHFQSFQMSYDHYHGYISLFVCIFGIVANTLNIIVLTRkemrsptnsilTGLAIADLLVMLDYIPFTLHLNImnkskrdkfnynWTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYpqhnrqwctmktTTVTILVGYIVCPLLCLPIYVTSKLKSRIVLLNQLdnnavnysvhpggnqsdhnvtlydetnsynatLYFIDLVdynltneiKLSITLSILAgtkvttmspymtrptrttppcilstsstti
mecnlfnntctpsydmnVSRENETYQYCGEHFQSFQMSYDHYHGYISLFVCIFGIVANTLNIIVLTRkemrsptnSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLPIYVTSKLKSRIVLLNQLDNNAVNYSVHPGGNQSDHNVTLYDETNSYNATLYFIDLVDYNLTNEIKLSItlsilagtkvttmspymtrptrttppcilstsstti
MECNLFNNTCTPSYDMNVSRENETYQYCGEHFQSFQMSYDHYHGYISLFVCIFGIVANTLNIIVLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLPIYVTSKLKSRIVLLNQLDNNAVNYSVHPGGNQSDHNVTLYDETNSYNATLYFIDLVDYNLTNEIKLSITLSILAGTKVttmspymtrptrttppCILSTSSTTI
****LFNNTCTPSYDMNVSRENETYQYCGEHFQSFQMSYDHYHGYISLFVCIFGIVANTLNIIVLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLPIYVTSKLKSRIVLLNQLDNNAVNYSVHPGGNQSDHNVTLYDETNSYNATLYFIDLVDYNLTNEIKLSITLSILAGTKVTTMSPY********************
***NLFNNTCTPSYDMNVSRENETYQYCGEHFQSFQMSYDHYHGYISLFVCIFGIVANTLNIIVLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLPIYVTSKLKSRIVLLNQLDNNAVNYSVHPGGNQSDHNVTLYDETNSYNATLYFIDLVDYNLTNEIKLSITLSILAGTKVTT*****************STS****
MECNLFNNTCTPSYDMNVSRENETYQYCGEHFQSFQMSYDHYHGYISLFVCIFGIVANTLNIIVLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLPIYVTSKLKSRIVLLNQLDNNAVNYSVHPGGNQSDHNVTLYDETNSYNATLYFIDLVDYNLTNEIKLSITLSILAGTKVTTMSPYMTRPTRTTPPCILSTSSTTI
**CNLFNNTCTPSYDMNVSRENETYQYCGEHFQSFQMSYDHYHGYISLFVCIFGIVANTLNIIVLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLPIYVTSKLKSRIVLLNQLDNNAVNYSVHPGGNQSDHNVTLYDETNSYNATLYFIDLVDYNLTNEIKLSITLSILAGTKVTTMSPYM*RPTRTTPPCILSTSSTTI
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MECNLFNNTCTPSYDMNVSRENETYQYCGEHFQSFQMSYDHYHGYISLFVCIFGIVANTLNIIVLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLPIYVTSKLKSRIVLLNQLDNNAVNYSVHPGGNQSDHNVTLYDETNSYNATLYFIDLVDYNLTNEIKLSITLSILAGTKVTTMSPYMTRPTRTTPPCILSTSSTTI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query283 2.2.26 [Sep-21-2011]
Q11082 434 Probable G-protein couple no N/A 0.540 0.352 0.288 2e-09
Q9VZW5 549 FMRFamide receptor OS=Dro no N/A 0.395 0.204 0.289 2e-07
P52702 443 D(2) dopamine receptor OS N/A N/A 0.551 0.352 0.258 4e-07
P61169 444 D(2) dopamine receptor OS yes N/A 0.544 0.346 0.267 4e-07
P30874369 Somatostatin receptor typ yes N/A 0.445 0.341 0.307 6e-07
P30875369 Somatostatin receptor typ yes N/A 0.540 0.414 0.282 7e-07
P61168 444 D(2) dopamine receptor OS no N/A 0.544 0.346 0.267 7e-07
P30680369 Somatostatin receptor typ no N/A 0.537 0.411 0.283 9e-07
Q49LX6369 Somatostatin receptor typ yes N/A 0.575 0.441 0.274 9e-07
P34993368 Somatostatin receptor typ yes N/A 0.512 0.394 0.282 1e-06
>sp|Q11082|YT66_CAEEL Probable G-protein coupled receptor B0563.6 OS=Caenorhabditis elegans GN=B0563.6 PE=2 SV=2 Back     alignment and function desciption
 Score = 63.2 bits (152), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/163 (28%), Positives = 80/163 (49%), Gaps = 10/163 (6%)

Query: 50  VCIFGIVANTLNIIVLTRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDK 109
           +C  GIV N  N++VL  + +R+ +   L  LA+ADLL ML  + F +    + K+    
Sbjct: 34  ICAIGIVGNITNLMVLASRRLRAVSYMYLRALAVADLLCMLFVLVF-VSTEYLAKNGSSI 92

Query: 110 FNYNWTMFVLFHSNFSQVCHTIS--IYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTIL 167
             Y        H   + +   +   +Y+ V L++ RYI++V+P H R W + +  T  I+
Sbjct: 93  NQYKLYQIYQCHLMLTLINWALGAGVYVVVALSLERYISIVFPMHFRTWNSPQRATRAIV 152

Query: 168 VGYIVCPLLCLPIYVTS-KLKSRIVLLNQLDNNAVNYSV--HP 207
           + +++  +  +P  +T  K K R  LL     N   YS+  HP
Sbjct: 153 IAFLIPAIFYVPYAITRYKGKQRFDLL----QNVTIYSMDDHP 191
Not known. Putative receptor.
Caenorhabditis elegans (taxid: 6239)
>sp|Q9VZW5|FMAR_DROME FMRFamide receptor OS=Drosophila melanogaster GN=FR PE=2 SV=1 Back     alignment and function description
>sp|P52702|DRD2_CHLAE D(2) dopamine receptor OS=Chlorocebus aethiops GN=DRD2 PE=2 SV=1 Back     alignment and function description
>sp|P61169|DRD2_RAT D(2) dopamine receptor OS=Rattus norvegicus GN=Drd2 PE=1 SV=1 Back     alignment and function description
>sp|P30874|SSR2_HUMAN Somatostatin receptor type 2 OS=Homo sapiens GN=SSTR2 PE=1 SV=1 Back     alignment and function description
>sp|P30875|SSR2_MOUSE Somatostatin receptor type 2 OS=Mus musculus GN=Sstr2 PE=1 SV=1 Back     alignment and function description
>sp|P61168|DRD2_MOUSE D(2) dopamine receptor OS=Mus musculus GN=Drd2 PE=2 SV=2 Back     alignment and function description
>sp|P30680|SSR2_RAT Somatostatin receptor type 2 OS=Rattus norvegicus GN=Sstr2 PE=1 SV=1 Back     alignment and function description
>sp|Q49LX6|SSR2_CANFA Somatostatin receptor type 2 OS=Canis familiaris GN=SSTR2 PE=3 SV=1 Back     alignment and function description
>sp|P34993|SSR2_BOVIN Somatostatin receptor type 2 OS=Bos taurus GN=SSTR2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query283
383850906 392 PREDICTED: FMRFamide receptor-like [Mega 0.678 0.489 0.546 1e-60
307184595351 FMRFamide receptor [Camponotus floridanu 0.745 0.601 0.504 1e-60
209867498 388 myosuppressin receptor [Apis mellifera] 0.674 0.492 0.561 2e-60
328790493 393 PREDICTED: FMRFamide receptor-like [Apis 0.674 0.486 0.561 2e-60
380023232 388 PREDICTED: FMRFamide receptor-like [Apis 0.674 0.492 0.551 6e-60
345497747 453 PREDICTED: probable G-protein coupled re 0.766 0.479 0.497 8e-60
307196678376 Probable G-protein coupled receptor B056 0.703 0.529 0.531 1e-59
340727389 388 PREDICTED: FMRFamide receptor-like [Bomb 0.696 0.507 0.533 3e-59
332028110381 Putative G-protein coupled receptor B056 0.752 0.559 0.493 6e-59
322791242336 hypothetical protein SINV_13232 [Solenop 0.720 0.607 0.530 1e-57
>gi|383850906|ref|XP_003701015.1| PREDICTED: FMRFamide receptor-like [Megachile rotundata] Back     alignment and taxonomy information
 Score =  239 bits (610), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 112/205 (54%), Positives = 150/205 (73%), Gaps = 13/205 (6%)

Query: 34  SFQMSYDHYHGYISLFVCIFGIVANTLNIIVLTRKEMRSPTNSILTGLAIADLLVMLDYI 93
           SF   Y   HG+ISLFVCIFG +AN LNI+VLTR+EMRSPTN ILTGLA+ADLLVM+DYI
Sbjct: 16  SFHSHYSQLHGWISLFVCIFGSIANILNILVLTRREMRSPTNIILTGLAVADLLVMIDYI 75

Query: 94  PFTLHLNIMNKSKRDKFNYNWTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHN 153
           P+  HL +  +S+RD F Y WT+FVLFHSNF+QVCHTISI LT++LA+WRY+AV  PQ N
Sbjct: 76  PYAFHLYLYRRSRRDTFTYGWTIFVLFHSNFAQVCHTISICLTLILAVWRYVAVARPQQN 135

Query: 154 RQWCTMKTTTVTILVGYIVCPLLCLPIYVTSKLKSRIVLLNQLDNNAVNYSVHPGGNQSD 213
           R+WC+ + T   I + Y+ CP+LC+P+Y+T+++K ++ +   LD+N        G + S+
Sbjct: 136 REWCSYRRTIFAIFIAYVFCPVLCVPLYITTEVKEQVEI---LDSN--------GMSVSN 184

Query: 214 HNVTLYDE--TNSYNATLYFIDLVD 236
            N +L D    N+ N TLYF+ L +
Sbjct: 185 RNQSLIDSPLENTTNVTLYFVRLSE 209

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307184595|gb|EFN70933.1| FMRFamide receptor [Camponotus floridanus] Back     alignment and taxonomy information
>gi|209867498|gb|ACI90287.1| myosuppressin receptor [Apis mellifera] Back     alignment and taxonomy information
>gi|328790493|ref|XP_001119993.2| PREDICTED: FMRFamide receptor-like [Apis mellifera] Back     alignment and taxonomy information
>gi|380023232|ref|XP_003695429.1| PREDICTED: FMRFamide receptor-like [Apis florea] Back     alignment and taxonomy information
>gi|345497747|ref|XP_001602251.2| PREDICTED: probable G-protein coupled receptor B0563.6-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|307196678|gb|EFN78137.1| Probable G-protein coupled receptor B0563.6 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|340727389|ref|XP_003402026.1| PREDICTED: FMRFamide receptor-like [Bombus terrestris] gi|350396325|ref|XP_003484515.1| PREDICTED: FMRFamide receptor-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|332028110|gb|EGI68161.1| Putative G-protein coupled receptor B0563.6 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|322791242|gb|EFZ15771.1| hypothetical protein SINV_13232 [Solenopsis invicta] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query283
FB|FBgn0035331 478 DmsR-1 "Dromyosuppressin recep 0.731 0.433 0.518 1.2e-51
FB|FBgn0264002 488 DmsR-2 "Dromyosuppressin recep 0.565 0.327 0.570 6.7e-49
FB|FBgn0033579414 CG13229 [Drosophila melanogast 0.611 0.417 0.426 6.5e-35
WB|WBGene00001175 395 egl-6 [Caenorhabditis elegans 0.547 0.392 0.352 3e-21
WB|WBGene00010191 510 dmsr-1 [Caenorhabditis elegans 0.409 0.227 0.381 2.5e-19
WB|WBGene00016428 429 dmsr-7 [Caenorhabditis elegans 0.512 0.337 0.346 3e-19
WB|WBGene00012962 401 dmsr-5 [Caenorhabditis elegans 0.643 0.453 0.276 1.1e-17
WB|WBGene00007951 483 dmsr-8 [Caenorhabditis elegans 0.526 0.308 0.328 1.5e-17
WB|WBGene00013222 394 dmsr-6 [Caenorhabditis elegans 0.636 0.456 0.282 1.3e-16
WB|WBGene00017038 379 dmsr-4 [Caenorhabditis elegans 0.530 0.395 0.316 1.5e-16
FB|FBgn0035331 DmsR-1 "Dromyosuppressin receptor 1" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 112/216 (51%), Positives = 145/216 (67%)

Query:    19 SRENETYQ-YCGEHFQSFQMSYDHYHGYISLFVCIFGIVANTLNIIVLTRKEMRSPTNSI 77
             S  NET   YCG    +F  SY + HGY+SL VCI G +ANTLNIIVLTR+EMRSPTN+I
Sbjct:     3 SGNNETEPLYCGSGMDNFHTSYKNMHGYVSLVVCILGTIANTLNIIVLTRREMRSPTNAI 62

Query:    78 LTGLAIADLLVMLDYIPFTLHLNIMNKS--KRDKFNYNWTMFVLFHSNFSQVCHTISIYL 135
             LTGLA+ADL VML+YIP+T+H  I+  S  + +K +Y+W  F+ FHS F+QV HTISI+L
Sbjct:    63 LTGLAVADLAVMLEYIPYTIHDYILTDSLPREEKLSYSWACFIKFHSIFAQVLHTISIWL 122

Query:   136 TVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLP-IYVTSKLKSRIVLLN 194
             TV LA+WRYIAV YPQ NR WC M+TT +TI   Y+VC L+  P +Y+ + +   +   +
Sbjct:   123 TVTLAVWRYIAVGYPQKNRVWCGMRTTIITITTAYVVCVLVVSPSLYLITAITEYV---D 179

Query:   195 QLD-NNAVNYSVHPGGNQSDH-NVTLYDETNSYNAT 228
             QLD N  V  S+       D+ N  +   T + NAT
Sbjct:   180 QLDMNGKVINSIPMTQYVIDYRNELMSARTAALNAT 215
GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA;ISS
GO:0004930 "G-protein coupled receptor activity" evidence=ISS
GO:0016021 "integral to membrane" evidence=IEA;ISS
GO:0008188 "neuropeptide receptor activity" evidence=ISS;IDA
GO:0045932 "negative regulation of muscle contraction" evidence=NAS
GO:0035013 "myosuppressin receptor activity" evidence=IDA;NAS
FB|FBgn0264002 DmsR-2 "Dromyosuppressin receptor 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
FB|FBgn0033579 CG13229 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00001175 egl-6 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
WB|WBGene00010191 dmsr-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
WB|WBGene00016428 dmsr-7 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
WB|WBGene00012962 dmsr-5 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
WB|WBGene00007951 dmsr-8 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
WB|WBGene00013222 dmsr-6 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
WB|WBGene00017038 dmsr-4 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query283
pfam10324317 pfam10324, 7TM_GPCR_Srw, Serpentine type 7TM GPCR 1e-12
pfam00001251 pfam00001, 7tm_1, 7 transmembrane receptor (rhodop 2e-08
PHA03087335 PHA03087, PHA03087, G protein-coupled chemokine re 4e-08
pfam10328275 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR 1e-05
pfam10320257 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR 1e-04
>gnl|CDD|220692 pfam10324, 7TM_GPCR_Srw, Serpentine type 7TM GPCR chemoreceptor Srw Back     alignment and domain information 
 Score = 66.5 bits (163), Expect = 1e-12
 Identities = 48/217 (22%), Positives = 85/217 (39%), Gaps = 19/217 (8%)

Query: 45  YISLFVCIFGIVANTLNIIVLTRKEMR-SPTNSILTGLAIADLLVMLDYIP---FTLHLN 100
            +   + I G + N  ++I+LTRK MR S  N I+ G+AI D++ ML  I        ++
Sbjct: 1   KVEFILSIIGFIINIFHLIILTRKSMRTSSINIIMIGIAICDIITMLLTIYNFIPEFIIS 60

Query: 101 IMNKSKRDKFNYNWTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNR--QWCT 158
             N       +Y   +      +   +    S +L V +A+ R + V  P  N+  +   
Sbjct: 61  YENSECIPPDSYLKVLLDWILESLQDISRRCSTWLGVFMALIRTLVVKNPMSNKIQKLSK 120

Query: 159 MKTTTVTILVGYIVCPLLCLPIYVTSKLKSRIV---LLNQLDNNAVNYSVHPGGNQSDHN 215
            K   + I    I+  +L LP  +    +  IV    + +   N   +  +    +  + 
Sbjct: 121 PKFGLIII----IIVFILSLPFSIFYYFRYEIVEEGGIWKPPPNCAGFPPNYTEPR--YV 174

Query: 216 VTLYDETNSYNATLYFIDLVDYNLTNEIKLSITLSIL 252
           + L +     +  L  I    Y L + I   I   IL
Sbjct: 175 LVLSELFTDNDGLLLKI----YLLIDGIVSKIIPCIL 207

Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type. Srw is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf'. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz. Length = 317
>gnl|CDD|215646 pfam00001, 7tm_1, 7 transmembrane receptor (rhodopsin family) Back     alignment and domain information
>gnl|CDD|222976 PHA03087, PHA03087, G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>gnl|CDD|220695 pfam10328, 7TM_GPCR_Srx, Serpentine type 7TM GPCR chemoreceptor Srx Back     alignment and domain information
>gnl|CDD|192535 pfam10320, 7TM_GPCR_Srsx, Serpentine type 7TM GPCR chemoreceptor Srsx Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 283
KOG4219|consensus 423 99.97
PHA03234338 DNA packaging protein UL33; Provisional 99.95
PHA02834323 chemokine receptor-like protein; Provisional 99.95
PHA02638417 CC chemokine receptor-like protein; Provisional 99.94
KOG4220|consensus 503 99.94
PHA03235 409 DNA packaging protein UL33; Provisional 99.93
PHA03087335 G protein-coupled chemokine receptor-like protein; 99.93
PF00001257 7tm_1: 7 transmembrane receptor (rhodopsin family) 99.91
PF10320257 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemorecep 99.61
PF10324318 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept 99.56
KOG2087|consensus363 99.53
PF10328274 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemorecept 99.35
PF05296303 TAS2R: Mammalian taste receptor protein (TAS2R); I 98.75
PF03402265 V1R: Vomeronasal organ pheromone receptor family, 98.61
PF05462303 Dicty_CAR: Slime mold cyclic AMP receptor 98.46
PF10323283 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemorecept 98.42
PF11710201 Git3: G protein-coupled glucose receptor regulatin 98.23
PF10321313 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemorecept 97.93
PF10292324 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor c 97.73
PF10316273 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemorecep 97.6
PF02101 405 Ocular_alb: Ocular albinism type 1 protein; InterP 97.55
PF10317292 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemorecept 97.15
PF00002242 7tm_2: 7 transmembrane receptor (Secretin family); 97.03
PF02117328 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemorecept 95.88
PF02118275 Srg: Srg family chemoreceptor; InterPro: IPR000609 95.46
PF10319310 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemorecept 91.38
PF03383153 Serpentine_r_xa: Caenorhabditis serpentine recepto 91.29
PF10326307 7TM_GPCR_Str: Serpentine type 7TM GPCR chemorecept 90.28
PF04789305 DUF621: Protein of unknown function (DUF621); Inte 89.3
KOG4564|consensus473 86.88
KOG4193|consensus610 86.46
PF10327303 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemorecept 84.81
PF10318302 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemorecept 82.69
>KOG4219|consensus Back     alignment and domain information 
Probab=99.97  E-value=3.2e-31  Score=229.18  Aligned_cols=149  Identities=21%  Similarity=0.361  Sum_probs=134.7

Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHhhHhh-ccCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCch
Q psy3988          35 FQMSYDHYHGYISLFVCIFGIVANTLNIIVL-TRKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYN  113 (283)
Q Consensus        35 ~~~~~~~~~~~~~~i~~iigi~gN~lvl~vi-~~~~lr~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~~  113 (283)
                      .+.....+.+++|.++.+++++||.++++++ .||++|+.+|+|++|||+||++++++..++......     ...|.+|
T Consensus        30 lp~~~~~~wai~yg~l~~vAv~GN~iVlwIil~hrrMRtvtnyfL~NLAfADl~~s~Fn~~f~f~yal-----~~~W~~G  104 (423)
T KOG4219|consen   30 LPAWQQALWAIAYGLLVFVAVVGNLIVLWIILAHRRMRTVTNYFLVNLAFADLSMSIFNTVFNFQYAL-----HQEWYFG  104 (423)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhcCceEEEEEeehhehhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHH-----Hhccccc
Confidence            3556677889999999999999999999987 689999999999999999999999999988776665     5789999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecccccceeeeccchhhhhhhhHHHHHHhHHHHHhhheeeecce
Q psy3988         114 WTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLPIYVTSKLKSRIV  191 (283)
Q Consensus       114 ~~~~c~~~~~~~~~~~~~s~~~l~~isidRyi~I~~P~~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~  191 (283)
                      + ..|++..|+..+...+|+++|++||+|||+||.||++.+  .++|.+++++.++|++++++++|..+..+......
T Consensus       105 ~-f~C~f~nf~~itav~vSVfTlvAiA~DRy~AIi~Pl~~r--~s~r~sk~iIllIW~lA~l~a~P~~l~s~v~~~~~  179 (423)
T KOG4219|consen  105 S-FYCRFVNFFPITAVFVSVFTLVAIAIDRYMAIIHPLQPR--PSRRSSKIIILLIWALALLLALPQLLYSSVEELYL  179 (423)
T ss_pred             c-ceeeeccccchhhhhHhHHHHHHHHHHHHHHHhhhcccC--CCCcceeehhHHHHHHHHHHhccceeeeeeEEeec
Confidence            8 699999999999999999999999999999999999977  59999999999999999999999988877665443

>PHA03234 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA02834 chemokine receptor-like protein; Provisional Back     alignment and domain information
>PHA02638 CC chemokine receptor-like protein; Provisional Back     alignment and domain information
>KOG4220|consensus Back     alignment and domain information
>PHA03235 DNA packaging protein UL33; Provisional Back     alignment and domain information
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional Back     alignment and domain information
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG2087|consensus Back     alignment and domain information
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs) Back     alignment and domain information
>PF03402 V1R: Vomeronasal organ pheromone receptor family, V1R; InterPro: IPR004072 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor Back     alignment and domain information
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF11710 Git3: G protein-coupled glucose receptor regulating Gpa2; InterPro: IPR023041 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor Back     alignment and domain information
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type [] Back     alignment and domain information
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10316 7TM_GPCR_Srbc: Serpentine type 7TM GPCR chemoreceptor Srbc ; InterPro: IPR019420 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes Back     alignment and domain information
>PF10317 7TM_GPCR_Srd: Serpentine type 7TM GPCR chemoreceptor Srd; InterPro: IPR019421 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02117 7TM_GPCR_Sra: Serpentine type 7TM GPCR chemoreceptor Sra; InterPro: IPR000344 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF02118 Srg: Srg family chemoreceptor; InterPro: IPR000609 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10319 7TM_GPCR_Srj: Serpentine type 7TM GPCR chemoreceptor Srj; InterPro: IPR019423 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF03383 Serpentine_r_xa: Caenorhabditis serpentine receptor-like protein, class xa; InterPro: IPR005047 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10326 7TM_GPCR_Str: Serpentine type 7TM GPCR chemoreceptor Str; InterPro: IPR019428 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF04789 DUF621: Protein of unknown function (DUF621); InterPro: IPR006874 This is a conserved region found in uncharacterised proteins from Caenorhabditis elegans, and is noted to have possible G-protein-coupled receptor-like activity Back     alignment and domain information
>KOG4564|consensus Back     alignment and domain information
>KOG4193|consensus Back     alignment and domain information
>PF10327 7TM_GPCR_Sri: Serpentine type 7TM GPCR chemoreceptor Sri; InterPro: IPR019429 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query283
3pbl_A 481 Structure Of The Human Dopamine D3 Receptor In Comp 4e-05
3d4s_A 490 Cholesterol Bound Form Of Human Beta2 Adrenergic Re 4e-04
3sn6_R514 Crystal Structure Of The Beta2 Adrenergic Receptor- 5e-04
3kj6_A366 Crystal Structure Of A Methylated Beta2 Adrenergic 7e-04
3pds_A 458 Irreversible Agonist-Beta2 Adrenoceptor Complex Len 8e-04
2r4r_A365 Crystal Structure Of The Human Beta2 Adrenoceptor L 8e-04
2r4s_A342 Crystal Structure Of The Human Beta2 Adrenoceptor L 8e-04
>pdb|3PBL|A Chain A, Structure Of The Human Dopamine D3 Receptor In Complex With Eticlopride Length = 481 Back     alignment and structure 
Iteration: 1

 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 75/172 (43%), Gaps = 40/172 (23%)
Query: 28  CGEHFQSFQMSYDHYHGYISLFVC--IFGIV-ANTLN-IIVLTRKEMRSPTNSILTGLAI 83
           CG    S   S    H Y +L  C  I  IV  N L  + VL  + +++ TN ++  LA+
Sbjct: 24  CGAE-NSTGASQARPHAYYALSYCALILAIVFGNGLVCMAVLKERALQTTTNYLVVSLAV 82
Query: 84  ADLLVMLDYIPFTLHLNIMNKSKRDKFNYNWTMFVLFHSNFSQVCHTISIYLTVVL---A 140
           ADLLV    +P+ ++L +            W        NFS++C  + + L V++   +
Sbjct: 83  ADLLVATLVMPWVVYLEVTGGV--------W--------NFSRICCDVFVTLDVMMCTAS 126
Query: 141 IW--------RYIAVVYPQHNR--------QWCTMKTTTVTILVGYIVCPLL 176
           IW        RY AVV P H +        +   +  T V +L   + CPLL
Sbjct: 127 IWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLL 178
>pdb|3D4S|A Chain A, Cholesterol Bound Form Of Human Beta2 Adrenergic Receptor. Length = 490 Back     alignment and structure
>pdb|3SN6|R Chain R, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 514 Back     alignment and structure
>pdb|3KJ6|A Chain A, Crystal Structure Of A Methylated Beta2 Adrenergic Receptor- Fab Complex Length = 366 Back     alignment and structure
>pdb|3PDS|A Chain A, Irreversible Agonist-Beta2 Adrenoceptor Complex Length = 458 Back     alignment and structure
>pdb|2R4R|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 365 Back     alignment and structure
>pdb|2R4S|A Chain A, Crystal Structure Of The Human Beta2 Adrenoceptor Length = 342 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query283
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 3e-15
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 2e-14
2z73_A 448 Rhodopsin; visual pigment, GQ-type, G-protein coup 2e-13
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 4e-13
4dkl_A 464 MU-type opioid receptor, lysozyme chimera; G-prote 4e-13
3odu_A 502 C-X-C chemokine receptor type 4, lysozyme chimera; 7e-11
3eml_A 488 Human adenosine A2A receptor/T4 lysozyme chimera; 1e-10
3v2y_A 520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 3e-10
4eiy_A 447 Adenosine receptor A2A/soluble cytochrome B562 CH; 2e-09
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 3e-09
2rh1_A 500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 5e-09
3rze_A 452 Histamine H1 receptor, lysozyme chimera; structura 8e-09
3pbl_A 481 D(3) dopamine receptor, lysozyme chimera; structur 1e-08
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 1e-08
3uon_A 467 Human M2 muscarinic acetylcholine, receptor T4 LY 2e-08
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Length = 349 Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448 Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Length = 364 Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Length = 464 Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Length = 502 Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Length = 488 Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Length = 520 Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Length = 447 Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A Length = 514 Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Length = 500 Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Length = 452 Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, protein structure initiative, AC technologies center for gene to 3D structure; HET: ETQ MAL; 2.89A {Homo sapiens} Length = 481 Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Length = 315 Back     alignment and structure
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Length = 467 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query283
4grv_A 510 Neurotensin receptor type 1, lysozyme chimera; G-p 100.0
3uon_A 467 Human M2 muscarinic acetylcholine, receptor T4 LY 99.97
3odu_A 502 C-X-C chemokine receptor type 4, lysozyme chimera; 99.97
1u19_A349 Rhodopsin; G protein-coupled receptor, membrane pr 99.97
2rh1_A 500 Beta-2-adrenergic receptor/T4-lysozyme chimera; GP 99.97
2lnl_A296 C-X-C chemokine receptor type 1; G protein coupled 99.96
4dkl_A 464 MU-type opioid receptor, lysozyme chimera; G-prote 99.96
3vw7_A 484 Proteinase-activated receptor 1, lysozyme; high re 99.96
2ks9_A364 Substance-P receptor; water, autodock, NK1, neurop 99.96
3rze_A 452 Histamine H1 receptor, lysozyme chimera; structura 99.96
3eml_A 488 Human adenosine A2A receptor/T4 lysozyme chimera; 99.96
3pbl_A 481 D(3) dopamine receptor, lysozyme chimera; structur 99.96
3v2y_A 520 Sphingosine 1-phosphate receptor 1, lysozyme CHIM; 99.96
2z73_A 448 Rhodopsin; visual pigment, GQ-type, G-protein coup 99.96
4amj_A315 Beta-1 adrenergic receptor; membrane protein, 7TMR 99.95
4eiy_A 447 Adenosine receptor A2A/soluble cytochrome B562 CH; 99.95
4ea3_A434 Fusion protein of nociceptin receptor and cytochr; 99.95
3sn6_R514 Lysozyme, beta-2 adrenergic receptor; seven transm 99.94
1hll_A32 Alpha-2A adrenergic receptor; helix-linker-helix, 98.63
2ki9_A33 Cannabinoid receptor 2; GPCR, G-protein coupled re 97.91
2lot_A64 Apelin receptor; membrane protein; NMR {Homo sapie 96.62
>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus} Back     alignment and structure
Probab=100.00  E-value=1.2e-33  Score=263.22  Aligned_cols=147  Identities=22%  Similarity=0.279  Sum_probs=129.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHhhHhhcc-C---CCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCch
Q psy3988          38 SYDHYHGYISLFVCIFGIVANTLNIIVLTR-K---EMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYN  113 (283)
Q Consensus        38 ~~~~~~~~~~~i~~iigi~gN~lvl~vi~~-~---~lr~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~~  113 (283)
                      ....++.++|.+++++|++||+++++++.+ |   ++|+++|+|++|||++|++++++.+|+.+...+   ...+.|.+|
T Consensus        30 ~~~v~~~~~~~~i~~~g~~gN~lvi~~i~~~~~~r~~~~~~n~~i~~La~aDll~~~~~~p~~~~~~~---~~~~~w~~g  106 (510)
T 4grv_A           30 YSKVLVTAIYLALFVVGTVGNSVTLFTLARKKSLQSLQSTVHYHLGSLALSDLLILLLAMPVELYNFI---WVHHPWAFG  106 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---TCCSSCSSH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhheeeecCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhCCCEEhh
Confidence            345677889999999999999999988754 4   355789999999999999999999999887664   224669998


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecccccceeeeccchhhhhhhhHHHHHHhHHHHHhhheeee
Q psy3988         114 WTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLPIYVTSKLKS  188 (283)
Q Consensus       114 ~~~~c~~~~~~~~~~~~~s~~~l~~isidRyi~I~~P~~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~  188 (283)
                      + ..|++..++..++..+|++++++||+|||++|++|++|+..++++++..+++++|++++++++|+++.+....
T Consensus       107 ~-~~C~~~~~~~~~~~~~S~~~l~~is~dRy~ai~~P~~~~~~~t~~~~~~~i~~~W~~s~~~~~p~~~~~~~~~  180 (510)
T 4grv_A          107 D-AGCRGYYFLRDACTYATALNVASLSVARYLAICHPFKAKTLMSRSRTKKFISAIWLASALLAIPMLFTMGLQN  180 (510)
T ss_dssp             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCCCCCSCCHHHHHHHHHHHHHHHTTHHHHEEEEE
T ss_pred             H-HHHHHHHHHHHHHHHHHHHHHHHHHHHheEEEeccccccccccccccceeehHHHHHHHHHHHHHHHhhcccc
Confidence            7 6899999999999999999999999999999999999999999999999999999999999999998877553
>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A* Back     alignment and structure
>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B* Back     alignment and structure
>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ... Back     alignment and structure
>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A* Back     alignment and structure
>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens} Back     alignment and structure
>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A* Back     alignment and structure
>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens} Back     alignment and structure
>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A Back     alignment and structure
>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens} Back     alignment and structure
>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A* Back     alignment and structure
>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens} Back     alignment and structure
>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A* Back     alignment and structure
>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Back     alignment and structure
>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A* Back     alignment and structure
>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A Back     alignment and structure
>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A* Back     alignment and structure
>1hll_A Alpha-2A adrenergic receptor; helix-linker-helix, membrane protein; NMR {Synthetic} SCOP: j.94.1.1 PDB: 1hof_A 1ho9_A 1hod_A Back     alignment and structure
>2ki9_A Cannabinoid receptor 2; GPCR, G-protein coupled receptor, membrane protein; NMR {Synthetic} Back     alignment and structure
>2lot_A Apelin receptor; membrane protein; NMR {Homo sapiens} PDB: 2lou_A 2lov_A 2low_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 283
d1u19a_348 f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 1e-06
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Length = 348 Back     information, alignment and structure

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.9 bits (110), Expect = 1e-06
 Identities = 21/116 (18%), Positives = 44/116 (37%), Gaps = 1/116 (0%)

Query: 48  LFVCIFGIVANTLNIIVLTR-KEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSK 106
             + + G   N L + V  + K++R+P N IL  LA+ADL ++      TL+ ++     
Sbjct: 45  FLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSLHGYFV 104

Query: 107 RDKFNYNWTMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTT 162
                 N   F         +   + + +   + + + ++      N     +  T
Sbjct: 105 FGPTGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRFGENHAIMGVAFT 160

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query283
d1u19a_348 Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} 99.95
>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=2.4e-27  Score=207.04  Aligned_cols=206  Identities=17%  Similarity=0.160  Sum_probs=153.2

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHhhHhhc-cCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCchh
Q psy3988          36 QMSYDHYHGYISLFVCIFGIVANTLNIIVLT-RKEMRSPTNSILTGLAIADLLVMLDYIPFTLHLNIMNKSKRDKFNYNW  114 (283)
Q Consensus        36 ~~~~~~~~~~~~~i~~iigi~gN~lvl~vi~-~~~lr~~~~~~l~~La~aDll~~~~~~p~~~~~~~~~~~~~~~~~~~~  114 (283)
                      ++....++.+++.+++++|++||+++++++. +|++|++.|+++.|||++|++.++..+|..+....     .+.|..+.
T Consensus        33 ~~~~~~~~~~~~~ii~v~gi~gN~lvi~vi~~~k~lr~~~~~~l~nLaiaDll~~~~~~~~~~~~~~-----~~~~~~~~  107 (348)
T d1u19a_          33 EPWQFSMLAAYMFLLIMLGFPINFLTLYVTVQHKKLRTPLNYILLNLAVADLFMVFGGFTTTLYTSL-----HGYFVFGP  107 (348)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHHHHHHHHTHHHHHHHHH-----HTSCTTHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHeehhhhccCCCCCHhHHHHHHHHHHHHHHHHHHHHHhhhhhc-----cCccccCc
Confidence            3444667788899999999999999998875 58999999999999999999999998888877664     35566655


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhheecccccceeeeccchhhhhhhhHHHHHHhHHHHHhhheeeecceeec
Q psy3988         115 TMFVLFHSNFSQVCHTISIYLTVVLAIWRYIAVVYPQHNRQWCTMKTTTVTILVGYIVCPLLCLPIYVTSKLKSRIVLLN  194 (283)
Q Consensus       115 ~~~c~~~~~~~~~~~~~s~~~l~~isidRyi~I~~P~~~~~~~t~~~~~~~i~~~W~~~~~~~~~~~~~~~~~~~~~~~~  194 (283)
                       ..|....++...+..+|.++++++++|||++|++|++|+.. ++++....+..+|..++++..|+.++...........
T Consensus       108 -~~c~~~~~~~~~~~~~s~~~l~~is~~R~~~i~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (348)
T d1u19a_         108 -TGCNLEGFFATLGGEIALWSLVVLAIERYVVVCKPMSNFRF-GENHAIMGVAFTWVMALACAAPPLVGWSRYIPEGMQC  185 (348)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSCCC-CHHHHHHHHHHHHHHHHHHHSGGGTTSSCCEEETTTT
T ss_pred             -hhhhhhhhccccceeeecchhhhhhcccceeeecccccccc-ccccccccceeeehhhhheecccccccceeccCCccc
Confidence             68999999999999999999999999999999999998774 6667777778888888888887776654432221111


Q ss_pred             -cCCCCcCcc-----------------------------ccccCCCCCCcccceeeeecCCCCceeeeecccccccchHh
Q psy3988         195 -QLDNNAVNY-----------------------------SVHPGGNQSDHNVTLYDETNSYNATLYFIDLVDYNLTNEIK  244 (283)
Q Consensus       195 -~~~~c~~~~-----------------------------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  244 (283)
                       +...+....                             .+....+++.++..                ....+.++++|
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~i~~~~y~~i~~~~~~~~~~~~----------------~~~~~~~~~~~  249 (348)
T d1u19a_         186 SCGIDYYTPHEETNNESFVIYMFVVHFIIPLIVIFFCYGQLVFTVKEAAAQQQ----------------ESATTQKAEKE  249 (348)
T ss_dssp             EEECCCSCCCGGGTHHHHHHHHHHHTTHHHHHHHHHHHTTTTTSSCSCCCSSC----------------SSSHHHHHHHH
T ss_pred             ccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc----------------hhhhhHHHHhh
Confidence             111110000                             22222222221111                22235567899


Q ss_pred             hhhHhhhhhhheehccCCcc
Q psy3988         245 LSITLSILAGTKVTTMSPYM  264 (283)
Q Consensus       245 ~~~~l~iiv~~F~icw~Py~  264 (283)
                      ++|++.+++++|++||+||.
T Consensus       250 ~~~~~~~i~~~f~~~~~P~~  269 (348)
T d1u19a_         250 VTRMVIIMVIAFLICWLPYA  269 (348)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HhheEEEeehHHHHHhhHHH
Confidence            99999999999999999985