Psyllid ID: psy4002

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------38
MERRSMKNKTLTVPVDTTKNGKQKRMHMVVKYDEPKFQQTRCQLEKNIALNNPLDDKEHNDNKTQNKKNTLYKSEKLGKRTLLKKQNVHNKDPIPDENDTKKTKWEPAHWKEVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQRPSCETCLNKDLCPQGKKELAERVKKSPKKRKS
ccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccHHHHHHccccHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHcccHHHHHccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHcccccHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHcccccccEEcHHHHHHHcccccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHccccccccc
cccccccccEEEEEccccHcHHHHHcccEEEcccccccEEEEEccccEEEcccccccccccccccccccEEEEEccccccEEEccccccccccccccccccccccccHHHHHHHHHHHHHHccccccHHHHHHHccccccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHcccccHHHHHHHHHHHcccccccccccccccccccccccccHcHHEHHHHHHcccccccccHHHHHHHHHHccccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccHHHcccHHHcHHHHHHHccccccccccccc
merrsmknktltvpvdttkngkqkrMHMVVkydepkfqqTRCQLEKnialnnplddkehndnktqnkkntlykseklgkRTLLKkqnvhnkdpipdendtkktkwepaHWKEVLNNIREMrkhgdapvdamgwdhsanvdiapevrRYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKknynndipNTIELLCklpgvgpkmahlCMNHAWgivtgigkdesrqpilspssrqisrSELICVRKCEKKIPQLCVDVHVHrishrlgwtkvfktpeDTRKELESWLPESLWSEVNHLLVGFGqqicksqrpscetclnkdlcpqgKKELAERVkkspkkrks
merrsmknktltvpvdttkngkqkrmhMVVKYDEPKFQQTRCQLEKNIAlnnplddkehndnktqnkkntlykseklgkrtllkkqnvhnkdpipdendtkktkwepaHWKEVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPilspssrqisrsELICVRKCEKKIPQLCVDvhvhrishrlgwtkvfktpeDTRKELESWLPESLWSEVNHLLVGFGQQICKSQRPSCETclnkdlcpqgkkelaervkkspkkrks
MERRSMKNKTLTVPVDTTKNGKQKRMHMVVKYDEPKFQQTRCQLEKNIALNNPLDDKEHNDNKTQNKKNTLYKSEKLGKRTLLKKQNVHNKDPIPDENDTKKTKWEPAHWKEVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQRPSCETCLNKDLCPQGKKELAERVKKSPKKRKS
***********************************************************************************************************AHWKEVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIG*******************ELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQRPSCETCLNKDL*********************
*************************************************************************************************************WKEVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQRPSCETCLNKDLC********************
**********LTVPVDTTKNGKQKRMHMVVKYDEPKFQQTRCQLEKNIALNNPLDDKEHNDNKTQNKKNTLYKSEKLGKRTLLKKQNVHNKDPIPDENDTKKTKWEPAHWKEVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQRPSCETCLNKDLCPQGK****************
********KTLTVPVDTTKNGKQKRMHMVVKYDEPKFQQTRCQLEKNIALNN****************NTLYKS**LGKRTLLK*******************KWEPAHWKEVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDES**********QISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQRPSCETCLNKDLCPQGKKEL*************
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
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MERRSMKNKTLTVPVDTTKNGKQKRMHMVVKYDEPKFQQTRCQLEKNIALNNPLDDKEHNDNKTQNKKNTLYKSEKLGKRTLLKKQNVHNKDPIPDENDTKKTKWEPAHWKEVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQRPSCETCLNKDLCPQGKKELAERVKKSPKKRKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query378 2.2.26 [Sep-21-2011]
O35980300 Endonuclease III-like pro yes N/A 0.613 0.773 0.5 2e-71
Q2KID2305 Endonuclease III-like pro yes N/A 0.589 0.731 0.490 5e-71
P78549312 Endonuclease III-like pro yes N/A 0.589 0.714 0.490 3e-67
P54137298 Probable endonuclease III yes N/A 0.566 0.718 0.46 7e-55
Q09907 355 Endonuclease III homolog yes N/A 0.584 0.622 0.414 7e-44
Q08214380 DNA base excision repair yes N/A 0.600 0.597 0.351 6e-39
P31378399 Mitochondrial DNA base ex no N/A 0.613 0.581 0.346 2e-36
Q8SRB8238 Endonuclease III homolog yes N/A 0.539 0.857 0.357 3e-34
Q9WYK0213 Endonuclease III OS=Therm yes N/A 0.494 0.877 0.355 4e-28
Q58030 344 Putative endonuclease MJ0 yes N/A 0.489 0.537 0.361 2e-21
>sp|O35980|NTHL1_MOUSE Endonuclease III-like protein 1 OS=Mus musculus GN=Nthl1 PE=2 SV=1 Back     alignment and function desciption
 Score =  270 bits (689), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 134/268 (50%), Positives = 163/268 (60%), Gaps = 36/268 (13%)

Query: 96  DENDTKKTKWEPAHWKEVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEVRRYHVLISLM 155
           D    K   WEP +W++ L NIR MR   DAPVD +G +H  +    P+VRRY VL+SLM
Sbjct: 66  DAEPLKVPVWEPQNWQQQLANIRIMRSKKDAPVDQLGAEHCYDASAPPKVRRYQVLLSLM 125

Query: 156 LSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILK 215
           LSSQTKD+V   AM RL+  GLT+E+I  T +D LG+LI PVGFW+ K K+IK  + IL+
Sbjct: 126 LSSQTKDQVTAGAMQRLRARGLTVESILQTDDDTLGRLIYPVGFWRNKVKYIKQTTAILQ 185

Query: 216 KNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSE 275
           + Y  DIP ++  L  LPGVGPKMAHL M  AWG ++GI                     
Sbjct: 186 QRYEGDIPASVAELVALPGVGPKMAHLAMAVAWGTISGIA-------------------- 225

Query: 276 LICVRKCEKKIPQLCVDVHVHRISHRLGWT-KVFKTPEDTRKELESWLPESLWSEVNHLL 334
                          VD HVHRI++RL WT K+ KTPE+TRK LE WLP  LWSEVN LL
Sbjct: 226 ---------------VDTHVHRIANRLRWTKKMTKTPEETRKNLEEWLPRVLWSEVNGLL 270

Query: 335 VGFGQQICKSQRPSCETCLNKDLCPQGK 362
           VGFGQQIC    P C+ CLNK LCP  +
Sbjct: 271 VGFGQQICLPVHPRCQACLNKALCPAAQ 298
Has both an apurinic and/or apyrimidinic endonuclease activity and a DNA N-glycosylase activity. Incises damaged DNA at cytosines, thymines and guanines. Acts on a damaged strand, 5' from the damaged site. Required for the repair of both oxidative DNA damage and spontaneous mutagenic lesions.
Mus musculus (taxid: 10090)
EC: 4EC: .EC: 2EC: .EC: 9EC: 9EC: .EC: 1EC: 8
>sp|Q2KID2|NTHL1_BOVIN Endonuclease III-like protein 1 OS=Bos taurus GN=NTHL1 PE=2 SV=1 Back     alignment and function description
>sp|P78549|NTHL1_HUMAN Endonuclease III-like protein 1 OS=Homo sapiens GN=NTHL1 PE=1 SV=2 Back     alignment and function description
>sp|P54137|NTH1_CAEEL Probable endonuclease III homolog OS=Caenorhabditis elegans GN=nth-1 PE=1 SV=2 Back     alignment and function description
>sp|Q09907|NTH1_SCHPO Endonuclease III homolog OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=nth1 PE=1 SV=1 Back     alignment and function description
>sp|Q08214|NTG2_YEAST DNA base excision repair N-glycosylase 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NTG2 PE=1 SV=1 Back     alignment and function description
>sp|P31378|NTG1_YEAST Mitochondrial DNA base excision repair N-glycosylase 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NTG1 PE=1 SV=1 Back     alignment and function description
>sp|Q8SRB8|NTH1_ENCCU Endonuclease III homolog OS=Encephalitozoon cuniculi (strain GB-M1) GN=NTH1 PE=1 SV=1 Back     alignment and function description
>sp|Q9WYK0|END3_THEMA Endonuclease III OS=Thermotoga maritima (strain ATCC 43589 / MSB8 / DSM 3109 / JCM 10099) GN=nth PE=3 SV=1 Back     alignment and function description
>sp|Q58030|Y613_METJA Putative endonuclease MJ0613 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0613 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query378
328720736280 PREDICTED: endonuclease III-like protein 0.600 0.810 0.570 4e-78
307196709368 Endonuclease III-like protein 1 [Harpegn 0.822 0.845 0.45 1e-75
332373842223 unknown [Dendroctonus ponderosae] 0.582 0.986 0.574 1e-75
291226292318 PREDICTED: predicted protein-like [Sacco 0.743 0.883 0.486 1e-75
357610921429 hypothetical protein KGM_13809 [Danaus p 0.624 0.550 0.522 1e-74
390369569445 PREDICTED: endonuclease III-like protein 0.772 0.656 0.451 1e-73
390333159409 PREDICTED: endonuclease III-like protein 0.722 0.667 0.458 7e-72
321475198306 hypothetical protein DAPPUDRAFT_193197 [ 0.608 0.751 0.531 2e-71
91088451283 PREDICTED: similar to predicted protein 0.589 0.787 0.532 6e-71
260801749239 hypothetical protein BRAFLDRAFT_200910 [ 0.626 0.991 0.525 9e-71
>gi|328720736|ref|XP_001949525.2| PREDICTED: endonuclease III-like protein 1-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  298 bits (762), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 150/263 (57%), Positives = 179/263 (68%), Gaps = 36/263 (13%)

Query: 100 TKKTKWEPAHWKEVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEVRRYHVLISLMLSSQ 159
           T  + W+P +W++ L+NIR+MRK   APVD MG D +A+++  PEV RYHVLISLMLSSQ
Sbjct: 43  TSDSNWKPPNWEKTLDNIRKMRKDIVAPVDNMGCDQAADLNEPPEVVRYHVLISLMLSSQ 102

Query: 160 TKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYN 219
           TKDEVN AAM RLK+HGLT++NI  TS+D LGKLI PVGFWKTK ++IK  + ILK  YN
Sbjct: 103 TKDEVNFAAMQRLKQHGLTVDNILETSDDHLGKLIYPVGFWKTKVQYIKRTTRILKDTYN 162

Query: 220 NDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICV 279
            DIPNTI+ LC+LPG+GPKMAHLCM+ AW  VTGIG                        
Sbjct: 163 GDIPNTIKDLCQLPGIGPKMAHLCMSCAWNEVTGIG------------------------ 198

Query: 280 RKCEKKIPQLCVDVHVHRISHRLGWT-KVFKTPEDTRKELESWLPESLWSEVNHLLVGFG 338
                      VD HVHRIS+RLGW  K  KTPE+TR  LESWLP+ LW EVNH+LVGFG
Sbjct: 199 -----------VDTHVHRISNRLGWVKKATKTPENTRIALESWLPKELWREVNHMLVGFG 247

Query: 339 QQICKSQRPSCETCLNKDLCPQG 361
           Q IC+   P C++CLNK  CP  
Sbjct: 248 QTICRPIGPHCDSCLNKKTCPSA 270

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|307196709|gb|EFN78168.1| Endonuclease III-like protein 1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|332373842|gb|AEE62062.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|291226292|ref|XP_002733128.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii] Back     alignment and taxonomy information
>gi|357610921|gb|EHJ67214.1| hypothetical protein KGM_13809 [Danaus plexippus] Back     alignment and taxonomy information
>gi|390369569|ref|XP_793669.3| PREDICTED: endonuclease III-like protein 1-like [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
>gi|390333159|ref|XP_001200032.2| PREDICTED: endonuclease III-like protein 1-like [Strongylocentrotus purpuratus] Back     alignment and taxonomy information
>gi|321475198|gb|EFX86161.1| hypothetical protein DAPPUDRAFT_193197 [Daphnia pulex] Back     alignment and taxonomy information
>gi|91088451|ref|XP_968911.1| PREDICTED: similar to predicted protein [Tribolium castaneum] Back     alignment and taxonomy information
>gi|260801749|ref|XP_002595758.1| hypothetical protein BRAFLDRAFT_200910 [Branchiostoma floridae] gi|229281005|gb|EEN51770.1| hypothetical protein BRAFLDRAFT_200910 [Branchiostoma floridae] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query378
ZFIN|ZDB-GENE-120511-4402 nthl1 "nth endonuclease III-li 0.574 0.539 0.465 1.2e-71
MGI|MGI:1313275300 Nthl1 "nth (endonuclease III)- 0.428 0.54 0.530 5.3e-69
UNIPROTKB|F1NQP6251 NTHL1 "Uncharacterized protein 0.407 0.613 0.571 6e-68
UNIPROTKB|Q2KID2305 NTHL1 "Endonuclease III-like p 0.404 0.501 0.542 8.7e-67
UNIPROTKB|E2QX23312 NTHL1 "Uncharacterized protein 0.489 0.592 0.484 2.6e-65
UNIPROTKB|P78549312 NTHL1 "Endonuclease III-like p 0.404 0.490 0.555 3.3e-65
UNIPROTKB|F1RFB3313 NTHL1 "Uncharacterized protein 0.404 0.488 0.545 5.4e-65
FB|FBgn0032907388 CG9272 [Drosophila melanogaste 0.439 0.427 0.431 1.3e-59
WB|WBGene00011201298 nth-1 [Caenorhabditis elegans 0.391 0.496 0.5 1.1e-54
TAIR|locus:2061345379 ATNTH1 [Arabidopsis thaliana ( 0.576 0.575 0.376 7.8e-54
ZFIN|ZDB-GENE-120511-4 nthl1 "nth endonuclease III-like 1 (E. coli)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 469 (170.2 bits), Expect = 1.2e-71, Sum P(2) = 1.2e-71
 Identities = 108/232 (46%), Positives = 141/232 (60%)

Query:    33 DEPKFQQTRCQLEKNIALNNPLDDKEHNDNKTQNKKNTLYKSEKLGK----RTLL---KK 85
             D+P   +   Q EK+I+     DD  H  N     K+T Y +    K    + LL   K+
Sbjct:    26 DDPPKVKAEVQ-EKSIS-----DDPTHAHNPADCVKSTSYNTTSKMKEEPDQALLSPRKR 79

Query:    86 QNVHNKDPIPDENDTKKTKWEPAHWKEVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEV 145
                H K  +  E +    K EP  W+  L+ IREMR   DAPVD MG +   +    PEV
Sbjct:    80 GRGHLK--VEYETEGVGLKREPYDWRTQLSFIREMRSKRDAPVDQMGAEKCYDTQGLPEV 137

Query:   146 RRYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAK 205
             RRY VLISLMLSSQTKD+V   AM RL+EHGL+++ I    ++ LGKLI PVGFW+TK K
Sbjct:   138 RRYQVLISLMLSSQTKDQVTAGAMQRLREHGLSVDGILKMDDETLGKLIYPVGFWRTKVK 197

Query:   206 HIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKD 257
             +IK A+ ++++ +  DIPNT+E L +LPGVGPKMAHL M+ AW  V+GIG D
Sbjct:   198 YIKQATALIQQEFGGDIPNTVEGLIRLPGVGPKMAHLAMDIAWNQVSGIGVD 249
GO:0003677 "DNA binding" evidence=IEA
GO:0004519 "endonuclease activity" evidence=IEA
GO:0006281 "DNA repair" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0006284 "base-excision repair" evidence=IEA
GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA
MGI|MGI:1313275 Nthl1 "nth (endonuclease III)-like 1 (E.coli)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NQP6 NTHL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KID2 NTHL1 "Endonuclease III-like protein 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QX23 NTHL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P78549 NTHL1 "Endonuclease III-like protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RFB3 NTHL1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
FB|FBgn0032907 CG9272 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
WB|WBGene00011201 nth-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
TAIR|locus:2061345 ATNTH1 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O35980NTHL1_MOUSE4, ., 2, ., 9, 9, ., 1, 80.50.61370.7733yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.990.766
4th Layer4.2.99.180.824

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query378
COG0177211 COG0177, Nth, Predicted EndoIII-related endonuclea 2e-64
smart00478149 smart00478, ENDO3c, endonuclease III 9e-42
cd00056158 cd00056, ENDO3c, endonuclease III; includes endonu 7e-40
TIGR01083191 TIGR01083, nth, endonuclease III 7e-33
pfam00730144 pfam00730, HhH-GPD, HhH-GPD superfamily base excis 2e-28
PRK10702211 PRK10702, PRK10702, endonuclease III; Provisional 4e-14
COG1194 342 COG1194, MutY, A/G-specific DNA glycosylase [DNA r 3e-11
COG2231215 COG2231, COG2231, Uncharacterized protein related 3e-09
TIGR01084275 TIGR01084, mutY, A/G-specific adenine glycosylase 2e-06
pfam0063330 pfam00633, HHH, Helix-hairpin-helix motif 2e-06
smart0052521 smart00525, FES, iron-sulpphur binding domain in D 0.004
>gnl|CDD|223255 COG0177, Nth, Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair] Back     alignment and domain information 
 Score =  203 bits (520), Expect = 2e-64
 Identities = 73/220 (33%), Positives = 117/220 (53%), Gaps = 37/220 (16%)

Query: 147 RYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKH 206
            + +L++++LS+QT DEV + A   L +   T E++ N  E+ L +LI  +G ++ KAK+
Sbjct: 29  PFELLVAVILSAQTTDEVVNKATPALFKRYPTPEDLLNADEEELEELIKSIGLYRNKAKN 88

Query: 207 IKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSP 266
           IK  + IL + +  ++P+T E L  LPGVG K A++ ++ A+G                 
Sbjct: 89  IKELARILLEKFGGEVPDTREELLSLPGVGRKTANVVLSFAFG----------------- 131

Query: 267 SSRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESL 326
                              IP + VD HVHR+S+RLG     KTPE+  + L   +P+ L
Sbjct: 132 -------------------IPAIAVDTHVHRVSNRLGLVPG-KTPEEVEEALMKLIPKEL 171

Query: 327 WSEVNHLLVGFGQQICKSQRPSCETCLNKDLCPQGKKELA 366
           W++++H L+  G+ ICK+++P CE C   DLCP   K   
Sbjct: 172 WTDLHHWLILHGRYICKARKPRCEECPLADLCPSAGKTGK 211

Length = 211
>gnl|CDD|214684 smart00478, ENDO3c, endonuclease III Back     alignment and domain information
>gnl|CDD|238013 cd00056, ENDO3c, endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases Back     alignment and domain information
>gnl|CDD|130155 TIGR01083, nth, endonuclease III Back     alignment and domain information
>gnl|CDD|216088 pfam00730, HhH-GPD, HhH-GPD superfamily base excision DNA repair protein Back     alignment and domain information
>gnl|CDD|182661 PRK10702, PRK10702, endonuclease III; Provisional Back     alignment and domain information
>gnl|CDD|224115 COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|225140 COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|130156 TIGR01084, mutY, A/G-specific adenine glycosylase Back     alignment and domain information
>gnl|CDD|109681 pfam00633, HHH, Helix-hairpin-helix motif Back     alignment and domain information
>gnl|CDD|197771 smart00525, FES, iron-sulpphur binding domain in DNA-(apurinic or apyrimidinic site) lyase (subfamily of ENDO3) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 378
KOG1921|consensus286 100.0
COG0177211 Nth Predicted EndoIII-related endonuclease [DNA re 100.0
PRK10702211 endonuclease III; Provisional 100.0
TIGR01084275 mutY A/G-specific adenine glycosylase. This equiva 100.0
PRK10880 350 adenine DNA glycosylase; Provisional 100.0
TIGR01083191 nth endonuclease III. This equivalog model identif 100.0
PRK13910 289 DNA glycosylase MutY; Provisional 100.0
COG1194 342 MutY A/G-specific DNA glycosylase [DNA replication 100.0
PRK13913218 3-methyladenine DNA glycosylase; Provisional 100.0
COG2231215 Uncharacterized protein related to Endonuclease II 99.98
smart00478149 ENDO3c endonuclease III. includes endonuclease III 99.96
cd00056158 ENDO3c endonuclease III; includes endonuclease III 99.96
KOG2457|consensus 555 99.95
PRK01229208 N-glycosylase/DNA lyase; Provisional 99.94
TIGR00588310 ogg 8-oxoguanine DNA-glycosylase (ogg). All protei 99.88
COG0122285 AlkA 3-methyladenine DNA glycosylase/8-oxoguanine 99.88
TIGR03252177 uncharacterized HhH-GPD family protein. This model 99.87
PRK10308283 3-methyl-adenine DNA glycosylase II; Provisional 99.86
KOG1918|consensus254 99.8
PF00730108 HhH-GPD: HhH-GPD superfamily base excision DNA rep 99.73
KOG2875|consensus323 99.65
COG1059210 Thermostable 8-oxoguanine DNA glycosylase [DNA rep 98.86
PF0063330 HHH: Helix-hairpin-helix motif; InterPro: IPR00044 98.26
PF1057617 EndIII_4Fe-2S: Iron-sulfur binding domain of endon 97.2
smart0052526 FES FES domain. iron-sulpphur binding domain in DN 96.46
PF03352179 Adenine_glyco: Methyladenine glycosylase; InterPro 95.95
COG2818188 Tag 3-methyladenine DNA glycosylase [DNA replicati 95.32
PF1471668 HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HU 93.04
PF09674232 DUF2400: Protein of unknown function (DUF2400); In 92.91
PF1282664 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS 92.64
smart0027826 HhH1 Helix-hairpin-helix DNA-binding motif class 1 92.62
TIGR00624179 tag DNA-3-methyladenine glycosylase I. This family 92.48
PRK10353187 3-methyl-adenine DNA glycosylase I; Provisional 92.34
TIGR02757229 conserved hypothetical protein TIGR02757. Members 91.55
PF09171246 DUF1886: Domain of unknown function (DUF1886); Int 88.95
TIGR0042669 competence protein ComEA helix-hairpin-helix repea 87.33
PRK13901196 ruvA Holliday junction DNA helicase RuvA; Provisio 86.33
PF1452060 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU 85.02
PF1283665 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE 84.97
COG0353198 RecR Recombinational DNA repair protein (RecF path 84.46
TIGR00608218 radc DNA repair protein radc. This family is based 83.16
PRK14606188 ruvA Holliday junction DNA helicase RuvA; Provisio 83.0
PRK14601183 ruvA Holliday junction DNA helicase RuvA; Provisio 82.32
PRK14602203 ruvA Holliday junction DNA helicase RuvA; Provisio 82.09
TIGR00575652 dnlj DNA ligase, NAD-dependent. The member of this 81.85
PRK14604195 ruvA Holliday junction DNA helicase RuvA; Provisio 81.34
PRK14603197 ruvA Holliday junction DNA helicase RuvA; Provisio 81.23
PRK00116192 ruvA Holliday junction DNA helicase RuvA; Reviewed 80.88
PRK02515132 psbU photosystem II complex extrinsic protein prec 80.72
COG0632201 RuvA Holliday junction resolvasome, DNA-binding su 80.46
>KOG1921|consensus Back     alignment and domain information 
Probab=100.00  E-value=2.6e-55  Score=411.25  Aligned_cols=245  Identities=51%  Similarity=0.883  Sum_probs=224.9

Q ss_pred             cccccCCCCCCCCCCCCC---CCCCChhhHHHHHHHHHHHhccCCCcccccCCCCCCCCCCCcccChHHHHHHHHHhccc
Q psy4002          84 KKQNVHNKDPIPDENDTK---KTKWEPAHWKEVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEVRRYHVLISLMLSSQT  160 (378)
Q Consensus        84 ~~~~~~~~~~~p~~~~~~---~~~~~p~~~~e~~~~l~~~~~~~~apvd~~G~~~~~~~~~~~~~~pF~~Lv~~iLsqqt  160 (378)
                      +..++++.+..|...+..   .....|+.|.++|++|+.||....+|||.|||+..++....|...+|++||+.|||+||
T Consensus        12 ~r~~~~~~~~~~~~~~~~~~~~~~~ppe~w~~~y~~ir~mR~k~~APVD~mGc~~~~~~~~~pk~~RfqvLv~lmLSSQT   91 (286)
T KOG1921|consen   12 RRVNVPNTWSTPADPSEPMGSASGKPPENWLEVYERIRKMRSKIVAPVDTMGCSRIPSLKADPKERRFQVLVGLMLSSQT   91 (286)
T ss_pred             hhccCCccccCcCCccccccCCCCCCCccHHHHHHHHHHHhhcccCCccccccccCccccCChhhHhHHHHHHHHHhcch
Confidence            335666666555443322   22345668999999999999999999999999999998888999999999999999999


Q ss_pred             cHHHHHHHHHHHHHhC-CCHHHHhccCHHHHHHhhcccCChHHHHHHHHHHHHHHHHhcCCCchhhHHHHhcCCCccHHH
Q psy4002         161 KDEVNHAAMGRLKEHG-LTIENICNTSEDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKM  239 (378)
Q Consensus       161 ~~~~~~~~~~~L~~~~-pt~e~la~a~~e~L~~~i~~~Gf~~~KA~~I~~lA~~i~e~y~g~ip~~~e~L~~LpGVGpkt  239 (378)
                      +|+++.+++.||.+.+ +|+|++.++++..|.++|.++|||++||.||+..|+.+.++|+||||+++++|++||||||||
T Consensus        92 KDevt~~Am~rL~~~~gLT~e~v~~~de~~l~~LI~~VgFy~rKA~ylkkta~IL~d~f~gDIP~~v~dLlsLPGVGPKM  171 (286)
T KOG1921|consen   92 KDEVTAAAMLRLKEYGGLTLEAVLKIDEPTLNELIYPVGFYTRKAKYLKKTAKILQDKFDGDIPDTVEDLLSLPGVGPKM  171 (286)
T ss_pred             HHHHHHHHHHHHHHhcCCCHHHHhccChHhHHhhhhhccchHHHHHHHHHHHHHHHHHhCCCCchhHHHHhcCCCCchHH
Confidence            9999999999999997 899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccccccCCCCCCCCCCCcchhhhhhhhhHHhhhccccCCccccchHHHHHHHHhCCCC-CCCCHHHHHHHH
Q psy4002         240 AHLCMNHAWGIVTGIGKDESRQPILSPSSRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTK-VFKTPEDTRKEL  318 (378)
Q Consensus       240 A~~~l~~a~~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VD~hv~Ri~~Rlg~~~-~~~~~~~~~~~l  318 (378)
                      |.++|..|||+..||+                                   ||+||||+++||||++ ..+++++++.+|
T Consensus       172 a~L~m~~AWn~i~GI~-----------------------------------VDtHVHRi~nrlgWv~~ktkspE~TR~aL  216 (286)
T KOG1921|consen  172 AHLTMQVAWNKIVGIC-----------------------------------VDTHVHRICNRLGWVDTKTKSPEQTRVAL  216 (286)
T ss_pred             HHHHHHHHhccceeEE-----------------------------------eehHHHHHHHHhcccccccCCHHHHHHHH
Confidence            9999999999999997                                   9999999999999998 345699999999


Q ss_pred             HhcCCcccHHHHHHHHHHhcchhccCCCCCCCCCCC-ccCCccccc
Q psy4002         319 ESWLPESLWSEVNHLLVGFGQQICKSQRPSCETCLN-KDLCPQGKK  363 (378)
Q Consensus       319 e~~lP~~~~~~~~~~Lv~~G~~iC~~~~P~C~~Cpl-~~~C~~~~~  363 (378)
                      +.|+|.+.|.++|.+|++|||.||.|++|+|+.|.+ ++.||+...
T Consensus       217 q~wLPk~lW~eIN~lLVGFGQ~iC~p~~prC~~C~~~~~~Cpss~~  262 (286)
T KOG1921|consen  217 QQWLPKSLWVEINHLLVGFGQTICTPRRPRCGLCLLSRDLCPSSFK  262 (286)
T ss_pred             HHhCcHHHHhhhhceeecccceeeecCCCCccccccCcccCchhhh
Confidence            999999999999999999999999999999999999 699999653

>COG0177 Nth Predicted EndoIII-related endonuclease [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK10702 endonuclease III; Provisional Back     alignment and domain information
>TIGR01084 mutY A/G-specific adenine glycosylase Back     alignment and domain information
>PRK10880 adenine DNA glycosylase; Provisional Back     alignment and domain information
>TIGR01083 nth endonuclease III Back     alignment and domain information
>PRK13910 DNA glycosylase MutY; Provisional Back     alignment and domain information
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK13913 3-methyladenine DNA glycosylase; Provisional Back     alignment and domain information
>COG2231 Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair] Back     alignment and domain information
>smart00478 ENDO3c endonuclease III Back     alignment and domain information
>cd00056 ENDO3c endonuclease III; includes endonuclease III (DNA-(apurinic or apyrimidinic site) lyase), alkylbase DNA glycosidases (Alka-family) and other DNA glycosidases Back     alignment and domain information
>KOG2457|consensus Back     alignment and domain information
>PRK01229 N-glycosylase/DNA lyase; Provisional Back     alignment and domain information
>TIGR00588 ogg 8-oxoguanine DNA-glycosylase (ogg) Back     alignment and domain information
>COG0122 AlkA 3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR03252 uncharacterized HhH-GPD family protein Back     alignment and domain information
>PRK10308 3-methyl-adenine DNA glycosylase II; Provisional Back     alignment and domain information
>KOG1918|consensus Back     alignment and domain information
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4 Back     alignment and domain information
>KOG2875|consensus Back     alignment and domain information
>COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ] Back     alignment and domain information
>PF10576 EndIII_4Fe-2S: Iron-sulfur binding domain of endonuclease III; InterPro: IPR003651 Endonuclease III (4 Back     alignment and domain information
>smart00525 FES FES domain Back     alignment and domain information
>PF03352 Adenine_glyco: Methyladenine glycosylase; InterPro: IPR005019 This family of methyladenine glycosylases includes DNA-3-methyladenine glycosylase I (3 Back     alignment and domain information
>COG2818 Tag 3-methyladenine DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>PF14716 HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HUZ_A 1HUO_A 2BPG_B 2BPF_A 1DK3_A 1BPE_A 1BNO_A 1BNP_A 1DK2_A Back     alignment and domain information
>PF09674 DUF2400: Protein of unknown function (DUF2400); InterPro: IPR014127 Members of this uncharacterised protein family are found sporadically, so far only among spirochetes, epsilon and delta proteobacteria, and Bacteroides Back     alignment and domain information
>PF12826 HHH_2: Helix-hairpin-helix motif; PDB: 1X2I_B 1DGS_A 1V9P_B Back     alignment and domain information
>smart00278 HhH1 Helix-hairpin-helix DNA-binding motif class 1 Back     alignment and domain information
>TIGR00624 tag DNA-3-methyladenine glycosylase I Back     alignment and domain information
>PRK10353 3-methyl-adenine DNA glycosylase I; Provisional Back     alignment and domain information
>TIGR02757 conserved hypothetical protein TIGR02757 Back     alignment and domain information
>PF09171 DUF1886: Domain of unknown function (DUF1886); InterPro: IPR015254 This entry represents a set of known and suspected archaeal N-glycosylase/DNA lyases Back     alignment and domain information
>TIGR00426 competence protein ComEA helix-hairpin-helix repeat region Back     alignment and domain information
>PRK13901 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A Back     alignment and domain information
>PF12836 HHH_3: Helix-hairpin-helix motif; PDB: 2EDU_A 2OCE_A 3BZK_A 3BZC_A 2DUY_A Back     alignment and domain information
>COG0353 RecR Recombinational DNA repair protein (RecF pathway) [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00608 radc DNA repair protein radc Back     alignment and domain information
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK14602 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>TIGR00575 dnlj DNA ligase, NAD-dependent Back     alignment and domain information
>PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK00116 ruvA Holliday junction DNA helicase RuvA; Reviewed Back     alignment and domain information
>PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional Back     alignment and domain information
>COG0632 RuvA Holliday junction resolvasome, DNA-binding subunit [DNA replication, recombination, and repair] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query378
1p59_A226 Structure Of A Non-Covalent Endonuclease Iii-Dna Co 5e-21
1orn_A226 Structure Of A Trapped Endonuclease Iii-Dna Covalen 7e-21
2abk_A211 Refinement Of The Native Structure Of Endonuclease 5e-12
3fsp_A 369 Muty Adenine Glycosylase Bound To A Transition Stat 7e-08
3g0q_A 352 Crystal Structure Of Muty Bound To Its Inhibitor Dn 1e-07
1rrs_A 369 Muty Adenine Glycosylase In Complex With Dna Contai 3e-07
1rrq_A 369 Muty Adenine Glycosylase In Complex With Dna Contai 6e-07
>pdb|1P59|A Chain A, Structure Of A Non-Covalent Endonuclease Iii-Dna Complex Length = 226 Back     alignment and structure 
Iteration: 1

 Score = 98.6 bits (244), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 62/229 (27%), Positives = 110/229 (48%), Gaps = 36/229 (15%)
Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
           + +LI+++LS+Q  D + +    RL E   T  +      + L + I  +G ++ KA++I
Sbjct: 34  FELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRSIGLYRNKARNI 93
Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPS 267
           +    +L   YN ++P   + L KLPGVG K A++ ++ A+G+                 
Sbjct: 94  QKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSTAFGV----------------- 136
Query: 268 SRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLW 327
                              P + VD HV R+S RLG+ +   +  +  K L   +P+  W
Sbjct: 137 -------------------PAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPKEEW 177
Query: 328 SEVNHLLVGFGQQICKSQRPSCETCLNKDLCPQGKKELAERVKKSPKKR 376
           S  +H ++ FG+  CK+Q P C +C    LC +GKK + +R +K+  ++
Sbjct: 178 SITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREGKKRMRKREEKAANQK 226
>pdb|1ORN|A Chain A, Structure Of A Trapped Endonuclease Iii-Dna Covalent Intermediate: Estranged-Guanine Complex Length = 226 Back     alignment and structure
>pdb|2ABK|A Chain A, Refinement Of The Native Structure Of Endonuclease Iii To A Resolution Of 1.85 Angstrom Length = 211 Back     alignment and structure
>pdb|3FSP|A Chain A, Muty Adenine Glycosylase Bound To A Transition State Analog (1n) Paired With Dg In Duplexed Dna Length = 369 Back     alignment and structure
>pdb|3G0Q|A Chain A, Crystal Structure Of Muty Bound To Its Inhibitor Dna Length = 352 Back     alignment and structure
>pdb|1RRS|A Chain A, Muty Adenine Glycosylase In Complex With Dna Containing An Abasic Site Length = 369 Back     alignment and structure
>pdb|1RRQ|A Chain A, Muty Adenine Glycosylase In Complex With Dna Containing An A:oxog Pair Length = 369 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query378
1orn_A226 Endonuclease III; DNA repair, DNA glycosylase, [4F 5e-44
2abk_A211 Endonuclease III; DNA-repair, DNA glycosylase; 1.8 4e-40
1pu6_A218 3-methyladenine DNA glycosylase; helix-hairpin-hel 5e-36
3fhg_A207 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 3e-24
3n0u_A219 Probable N-glycosylase/DNA lyase; structural genom 3e-21
4e9f_A161 Methyl-CPG-binding domain protein 4; HHH DNA glyco 1e-10
3fhf_A214 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 6e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A* Length = 226 Back     alignment and structure
 Score =  151 bits (383), Expect = 5e-44
 Identities = 64/230 (27%), Positives = 110/230 (47%), Gaps = 38/230 (16%)

Query: 148 YHVLISLMLSSQTKDE-VNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKH 206
           + +LI+++LS+Q  D  VN     RL E   T  +      + L + I  +G ++ KA++
Sbjct: 34  FELLIAVVLSAQCTDALVN-KVTKRLFEKYRTPHDYIAVPLEELEQDIRSIGLYRNKARN 92

Query: 207 IKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSP 266
           I+    +L   YN ++P   + L KLPGVG K A++ ++ A+G+                
Sbjct: 93  IQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVAFGV---------------- 136

Query: 267 SSRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESL 326
                               P + VD HV R+S RLG+ +   +  +  K L   +P+  
Sbjct: 137 --------------------PAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPKEE 176

Query: 327 WSEVNHLLVGFGQQICKSQRPSCETCLNKDLCPQGKKELAERVKKSPKKR 376
           WS  +H ++ FG+  CK+Q P C +C    LC +GKK + +R +K+  ++
Sbjct: 177 WSITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREGKKRMRKREEKAANQK 226
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1 Length = 211 Back     alignment and structure
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A* Length = 218 Back     alignment and structure
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus} Length = 207 Back     alignment and structure
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima} Length = 219 Back     alignment and structure
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A Length = 161 Back     alignment and structure
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A* Length = 214 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query378
1orn_A226 Endonuclease III; DNA repair, DNA glycosylase, [4F 100.0
2abk_A211 Endonuclease III; DNA-repair, DNA glycosylase; 1.8 100.0
1kea_A221 Possible G-T mismatches repair enzyme; DNA repair, 100.0
1kg2_A225 A/G-specific adenine glycosylase; DNA repair, hydr 100.0
3fsp_A 369 A/G-specific adenine glycosylase; protein-DNA comp 100.0
3n5n_X287 A/G-specific adenine DNA glycosylase; alpha-helice 100.0
1pu6_A218 3-methyladenine DNA glycosylase; helix-hairpin-hel 100.0
3fhf_A214 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 99.96
4b21_A232 Probable DNA-3-methyladenine glycosylase 2; hydrol 99.96
3s6i_A228 DNA-3-methyladenine glycosylase 1; DNA glycosylase 99.96
2yg9_A225 DNA-3-methyladenine glycosidase II, putative; hydr 99.95
2h56_A233 DNA-3-methyladenine glycosidase; 10174367, EC 3.2. 99.95
3fhg_A207 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 99.95
4e9f_A161 Methyl-CPG-binding domain protein 4; HHH DNA glyco 99.94
3n0u_A219 Probable N-glycosylase/DNA lyase; structural genom 99.93
3i0w_A290 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8- 99.93
2xhi_A360 N-glycosylase/DNA lyase; lyase-DNA complex, lyase/ 99.91
1mpg_A282 ALKA, 3-methyladenine DNA glycosylase II; DNA repa 99.91
2jhn_A295 ALKA, 3-methyladenine DNA-glycosylase; DNA repair, 99.9
2jg6_A186 DNA-3-methyladenine glycosidase; 3-methyladenine-D 96.07
2ofk_A183 3-methyladenine DNA glycosylase I, constitutive; D 95.71
4glx_A586 DNA ligase; inhibitor, ligase-ligase inhibitor-DNA 90.08
1wcn_A70 Transcription elongation protein NUSA; RNA-binding 87.39
1x2i_A75 HEF helicase/nuclease; alpha helix, helix-hairpin- 86.98
3vdp_A212 Recombination protein RECR; zinc finger, DNA repai 85.15
1dgs_A667 DNA ligase; AMP complex, NAD+-dependent; HET: DNA 84.42
1kft_A78 UVRC, excinuclease ABC subunit C; helix-hairpin-he 84.21
2owo_A671 DNA ligase; protein-DNA complex, ligase-DNA comple 84.07
1z00_A89 DNA excision repair protein ERCC-1; helix-hairpin- 83.71
1vdd_A228 Recombination protein RECR; helix-hairpin-helix, z 82.89
2a1j_B91 DNA excision repair protein ERCC-1; XPF, xeroderma 82.22
4gfj_A685 Topoisomerase V; helix-hairpin-helix, DNA repair e 82.18
2fmp_A 335 DNA polymerase beta; nucleotidyl transferase, tran 81.59
2duy_A75 Competence protein comea-related protein; helix-ha 80.51
>1orn_A Endonuclease III; DNA repair, DNA glycosylase, [4Fe-4S] cluster, iron-sulfur cluster, hydrolase/DNA complex; HET: PED; 1.70A {Geobacillus stearothermophilus} SCOP: a.96.1.1 PDB: 1orp_A* 1p59_A* Back     alignment and structure
Probab=100.00  E-value=1.8e-45  Score=345.31  Aligned_cols=207  Identities=29%  Similarity=0.519  Sum_probs=188.0

Q ss_pred             hhHHHHHHHHHHHhccCCCcccccCCCCCCCCCCCcccChHHHHHHHHHhccccHHHHHHHHHHHHHhCCCHHHHhccCH
Q psy4002         108 AHWKEVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSE  187 (378)
Q Consensus       108 ~~~~e~~~~l~~~~~~~~apvd~~G~~~~~~~~~~~~~~pF~~Lv~~iLsqqt~~~~~~~~~~~L~~~~pt~e~la~a~~  187 (378)
                      ..+.+++..|.+........              .+..+||++||++||+|||+++++..++.+|+..|||+++|+++++
T Consensus         8 ~~~~~i~~~L~~~y~~~~~~--------------l~~~~pfe~Lv~~IlsQqts~~~v~~~~~~l~~~fpt~~~la~a~~   73 (226)
T 1orn_A            8 QQIRYCLDEMAKMFPDAHCE--------------LVHRNPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPL   73 (226)
T ss_dssp             HHHHHHHHHHHHHCTTCCCC--------------SCCSSHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCCSHHHHHSSCH
T ss_pred             HHHHHHHHHHHHHcCccCCC--------------CCCCCHHHHHHHHHHhCCCcHHHHHHHHHHHHHHCCCHHHHHcCCH
Confidence            45667777777764332111              1234699999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcccCChHHHHHHHHHHHHHHHHhcCCCchhhHHHHhcCCCccHHHHHHHHHHHhccccccCCCCCCCCCCCcc
Q psy4002         188 DVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPS  267 (378)
Q Consensus       188 e~L~~~i~~~Gf~~~KA~~I~~lA~~i~e~y~g~ip~~~e~L~~LpGVGpktA~~~l~~a~~r~~~i~~~~~~~~~~~~~  267 (378)
                      ++|+++|+++||+++||++|+++|+.+.++|+|++|+++++|++|||||+|||+++|+|++|++                
T Consensus        74 ~~l~~~i~~~G~~~~KA~~l~~~a~~i~~~~~g~~p~~~~~L~~lpGIG~~TA~~il~~a~g~~----------------  137 (226)
T 1orn_A           74 EELEQDIRSIGLYRNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVAFGVP----------------  137 (226)
T ss_dssp             HHHHHHTGGGSSHHHHHHHHHHHHHHHHHHSTTSCCSCHHHHTTSTTCCHHHHHHHHHHHHCCC----------------
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHCCCccHHHHHHHHHHHCCCc----------------
Confidence            9999999999999999999999999999999999999999999999999999999999999973                


Q ss_pred             hhhhhhhhhHHhhhccccCCccccchHHHHHHHHhCCCCCCCCHHHHHHHHHhcCCcccHHHHHHHHHHhcchhccCCCC
Q psy4002         268 SRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQRP  347 (378)
Q Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~VD~hv~Ri~~Rlg~~~~~~~~~~~~~~le~~lP~~~~~~~~~~Lv~~G~~iC~~~~P  347 (378)
                                          +|+||+||+|++.|+|++....++++++..+++|+|++.|+.+|++|++||+.+|++++|
T Consensus       138 --------------------~~~vD~~v~Rv~~rlg~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~lv~~G~~~C~~~~P  197 (226)
T 1orn_A          138 --------------------AIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPKEEWSITHHRMIFFGRYHCKAQSP  197 (226)
T ss_dssp             --------------------CCCCCHHHHHHHHHHTSSCTTCCHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTSCSSCC
T ss_pred             --------------------eeeeCHHHHHHHHHhCCCCCCCCHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHcCCCCC
Confidence                                456999999999999998757889999999999999999999999999999999999999


Q ss_pred             CCCCCCCccCCcccccc
Q psy4002         348 SCETCLNKDLCPQGKKE  364 (378)
Q Consensus       348 ~C~~Cpl~~~C~~~~~~  364 (378)
                      +|+.|||++.|+++...
T Consensus       198 ~C~~Cpl~~~C~~~~~~  214 (226)
T 1orn_A          198 QCPSCPLLHLCREGKKR  214 (226)
T ss_dssp             CGGGCTTGGGCHHHHHH
T ss_pred             CCCCCCChhhhhhHhhc
Confidence            99999999999998765
>2abk_A Endonuclease III; DNA-repair, DNA glycosylase; 1.85A {Escherichia coli} SCOP: a.96.1.1 Back     alignment and structure
>1kea_A Possible G-T mismatches repair enzyme; DNA repair, DNA glycosylase, DNA mismatch, methylation; 2.00A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.96.1.2 Back     alignment and structure
>1kg2_A A/G-specific adenine glycosylase; DNA repair, hydrolase; 1.20A {Escherichia coli} SCOP: a.96.1.2 PDB: 1kg3_A 1muy_A 1kg6_A 1kg5_A 1mun_A 1mud_A 1kg4_A 1weg_A 1wei_A* 1wef_A* 1kg7_A 1kqj_A Back     alignment and structure
>3fsp_A A/G-specific adenine glycosylase; protein-DNA complex, DNA glycosylase, transition state analog, DNA repair; HET: NRI; 2.20A {Geobacillus stearothermophilus} PDB: 3fsq_A* 1rrs_A* 1vrl_A* 1rrq_A* 3g0q_A* Back     alignment and structure
>3n5n_X A/G-specific adenine DNA glycosylase; alpha-helices, helix-hairpin-helix motif, iron-sulfur cluste hydrolase; 2.30A {Homo sapiens} Back     alignment and structure
>1pu6_A 3-methyladenine DNA glycosylase; helix-hairpin-helix, base excision repair, hydrolase; HET: KCX; 1.64A {Helicobacter pylori} SCOP: a.96.1.5 PDB: 1pu7_A* 1pu8_A* Back     alignment and structure
>3fhf_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase; 2.00A {Methanocaldococcus jannaschii} PDB: 3knt_A* Back     alignment and structure
>4b21_A Probable DNA-3-methyladenine glycosylase 2; hydrolase-DNA complex, helix-hairpin-helix; HET: BGC 3DR; 1.45A {Schizosaccharomyces pombe} PDB: 4b22_A* 4b23_A* 4b24_A* Back     alignment and structure
>3s6i_A DNA-3-methyladenine glycosylase 1; DNA glycosylase, DNA repair, helix-hairpin-helix (HHH), ABAS tetrahydrofuran (THF); HET: 3DR; 2.28A {Schizosaccharomyces pombe} Back     alignment and structure
>2yg9_A DNA-3-methyladenine glycosidase II, putative; hydrolase, DNA repair; 1.95A {Deinococcus radiodurans} PDB: 2yg8_A Back     alignment and structure
>2h56_A DNA-3-methyladenine glycosidase; 10174367, EC 3.2.2.-, struc genomics, PSI-2, protein structure initiative, joint center structural genomics; 2.55A {Bacillus halodurans} Back     alignment and structure
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus} Back     alignment and structure
>4e9f_A Methyl-CPG-binding domain protein 4; HHH DNA glycosylase family, hydrolase-DNA complex; HET: DNA 3DR; 1.79A {Homo sapiens} PDB: 4e9e_A* 4e9g_A* 4e9h_A* 4ea5_A* 4dk9_A* 1ngn_A 4ea4_A* 4ew4_A* 4evv_A* 4ew0_A* 3iho_A Back     alignment and structure
>3n0u_A Probable N-glycosylase/DNA lyase; structural genomics, ISFI, DNA repair, 8-oxoguanine, base EX repair, PSI-2, protein structure initiative; 1.50A {Thermotoga maritima} Back     alignment and structure
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG, glycosylase, cytosine, hydrolase,lyase/DNA complex; HET: 8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A* 3f10_A* 3f0z_A Back     alignment and structure
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex, separation-OF-function helix-hairpin-helix, DNA repair; HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A* 1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A* 1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A 1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ... Back     alignment and structure
>1mpg_A ALKA, 3-methyladenine DNA glycosylase II; DNA repair, base excision, methylation, ALK hydrolase; 1.80A {Escherichia coli} SCOP: a.96.1.3 d.129.1.2 PDB: 1diz_A 1pvs_A* 3cvs_A* 3cvt_A* 3cw7_A* 3cwa_A* 3cws_A* 3cwt_A* 3cwu_A* 3d4v_A* 3ogd_A* 3oh9_A* 3oh6_A* Back     alignment and structure
>2jhn_A ALKA, 3-methyladenine DNA-glycosylase; DNA repair, N1-methyladenine, N3-methylcytosine, hyperthermophiles, hydrolase; HET: MBO MES; 1.8A {Archaeoglobus fulgidus} PDB: 2jhj_A Back     alignment and structure
>2jg6_A DNA-3-methyladenine glycosidase; 3-methyladenine-DNA-glycosylase-I, hydrolase; 1.70A {Staphylococcus aureus} PDB: 4aia_A* 4ai5_A* 4ai4_A Back     alignment and structure
>2ofk_A 3-methyladenine DNA glycosylase I, constitutive; DNA repair, base excision, helix-hairpin-helix, hydrolase; HET: PGE; 1.50A {Salmonella typhi} PDB: 2ofi_A* 1lmz_A 1nku_A 1p7m_A* Back     alignment and structure
>4glx_A DNA ligase; inhibitor, ligase-ligase inhibitor-DNA complex; HET: DNA 0XS; 1.90A {Escherichia coli} Back     alignment and structure
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B Back     alignment and structure
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5 Back     alignment and structure
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D Back     alignment and structure
>1dgs_A DNA ligase; AMP complex, NAD+-dependent; HET: DNA AMP; 2.90A {Thermus filiformis} SCOP: a.60.2.2 b.40.4.6 d.142.2.2 PDB: 1v9p_A* Back     alignment and structure
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3 Back     alignment and structure
>2owo_A DNA ligase; protein-DNA complex, ligase-DNA complex; HET: DNA OMC AMP; 2.30A {Escherichia coli} Back     alignment and structure
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 Back     alignment and structure
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A Back     alignment and structure
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 Back     alignment and structure
>4gfj_A Topoisomerase V; helix-hairpin-helix, DNA repair enzyme, DNA B isomerase; 2.91A {Methanopyrus kandleri AV19} Back     alignment and structure
>2fmp_A DNA polymerase beta; nucleotidyl transferase, transferase/DNA complex; HET: DNA DOC DCT; 1.65A {Homo sapiens} SCOP: a.60.6.1 a.60.12.1 d.218.1.2 PDB: 1bpx_A* 1bpz_A* 1mq2_A* 1mq3_A* 1bpy_A* 1tva_A* 1zjm_A* 1zjn_A* 1zqa_A* 1zqb_A* 1zqc_A* 1zqd_A* 1zqe_A* 1zqf_A* 1zqg_A* 1zqh_A* 1zqi_A* 1zqj_A* 1zqk_A* 1zql_A* ... Back     alignment and structure
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 378
d1orna_214 a.96.1.1 (A:) Endonuclease III {Escherichia coli [ 2e-22
d1pu6a_217 a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III 5e-22
d2abka_211 a.96.1.1 (A:) Endonuclease III {Escherichia coli [ 7e-17
d1keaa_217 a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Me 1e-16
d1kg2a_224 a.96.1.2 (A:) Catalytic domain of MutY {Escherichi 5e-15
d1rrqa1221 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacil 1e-14
d2noha1190 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Hum 2e-13
d1ngna_144 a.96.1.2 (A:) Mismatch-specific thymine glycosylas 3e-08
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Length = 214 Back     information, alignment and structure

class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Endonuclease III
domain: Endonuclease III
species: Escherichia coli [TaxId: 562]

 Score = 92.3 bits (228), Expect = 2e-22
 Identities = 59/218 (27%), Positives = 102/218 (46%), Gaps = 36/218 (16%)

Query: 148 YHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTSEDVLGKLIIPVGFWKTKAKHI 207
           + +LI+++LS+Q  D + +    RL E   T  +      + L + I  +G ++ KA++I
Sbjct: 31  FELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVPLEELEQDIRSIGLYRNKARNI 90

Query: 208 KMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSPS 267
           +    +L   YN ++P   + L KLPGVG K A++ ++ A+                   
Sbjct: 91  QKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVAF------------------- 131

Query: 268 SRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLW 327
                             +P + VD HV R+S RLG+ +   +  +  K L   +P+  W
Sbjct: 132 -----------------GVPAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPKEEW 174

Query: 328 SEVNHLLVGFGQQICKSQRPSCETCLNKDLCPQGKKEL 365
           S  +H ++ FG+  CK+Q P C +C    LC +GKK +
Sbjct: 175 SITHHRMIFFGRYHCKAQSPQCPSCPLLHLCREGKKRM 212
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]} Length = 217 Back     information, alignment and structure
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Length = 211 Back     information, alignment and structure
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]} Length = 217 Back     information, alignment and structure
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]} Length = 224 Back     information, alignment and structure
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]} Length = 221 Back     information, alignment and structure
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Length = 190 Back     information, alignment and structure
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 144 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query378
d1orna_214 Endonuclease III {Escherichia coli [TaxId: 562]} 100.0
d2abka_211 Endonuclease III {Escherichia coli [TaxId: 562]} 100.0
d1keaa_217 Thymine-DNA glycosylase {Archaeon Methanobacterium 100.0
d1kg2a_224 Catalytic domain of MutY {Escherichia coli [TaxId: 100.0
d1rrqa1221 Catalytic domain of MutY {Bacillus stearothermophi 100.0
d1pu6a_217 3-Methyladenine DNA glycosylase III (MagIII) {Heli 100.0
d1ngna_144 Mismatch-specific thymine glycosylase domain of th 99.93
d2noha1190 8-oxoguanine glycosylase {Human (Homo sapiens) [Ta 99.91
d1mpga1183 3-Methyladenine DNA glycosylase II (gene alkA or a 99.9
d1nkua_187 3-Methyladenine DNA glycosylase I (Tag) {Escherich 95.63
d2fmpa182 DNA polymerase beta, N-terminal (8 kD)-domain {Hum 93.95
d2bcqa176 DNA polymerase lambda {Human (Homo sapiens) [TaxId 92.43
d1dgsa1181 NAD+-dependent DNA ligase, domain 3 {Thermus filif 92.06
d2i1qa160 DNA repair protein Rad51, N-terminal domain {Archa 92.05
d1kfta_56 Excinuclease UvrC C-terminal domain {Escherichia c 91.79
d1cuka278 DNA helicase RuvA subunit, middle domain {Escheric 91.34
d1x2ia168 ATP-dependent RNA helicase PF2015 {Pyrococcus furi 91.32
d1bvsa271 DNA helicase RuvA subunit, middle domain {Mycobact 90.78
d1ixra173 DNA helicase RuvA subunit, middle domain {Thermus 90.59
d1szpa164 DNA repair protein Rad51, N-terminal domain {Baker 89.78
d2bgwa170 DNA repair endonuclease XPF {Aeropyrum pernix [Tax 89.4
d1pzna161 DNA repair protein Rad51, N-terminal domain {Archa 88.83
d1jmsa195 Terminal deoxynucleotidyl transferase {Mouse (Mus 88.4
d2a1ja162 DNA repair endonuclease XPF {Human (Homo sapiens) 86.76
d2edua191 KIF22, C-terminal domain {Human (Homo sapiens) [Ta 83.27
d1vdda_199 Recombination protein RecR {Deinococcus radioduran 82.45
d2duya165 Uncharacterized protein TTHA1967 {Thermus thermoph 81.77
d2i1qa160 DNA repair protein Rad51, N-terminal domain {Archa 81.7
d1b22a_70 DNA repair protein Rad51, N-terminal domain {Human 81.45
d3bzka190 Transcriptional accessory factor Tex {Pseudomonas 81.4
d2a1ja162 DNA repair endonuclease XPF {Human (Homo sapiens) 80.77
d3bzka190 Transcriptional accessory factor Tex {Pseudomonas 80.28
d2a1jb178 DNA excision repair protein ERCC-1 {Human (Homo sa 80.14
>d1orna_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: All alpha proteins
fold: DNA-glycosylase
superfamily: DNA-glycosylase
family: Endonuclease III
domain: Endonuclease III
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.2e-47  Score=350.19  Aligned_cols=209  Identities=30%  Similarity=0.537  Sum_probs=191.6

Q ss_pred             hhhHHHHHHHHHHHhccCCCcccccCCCCCCCCCCCcccChHHHHHHHHHhccccHHHHHHHHHHHHHhCCCHHHHhccC
Q psy4002         107 PAHWKEVLNNIREMRKHGDAPVDAMGWDHSANVDIAPEVRRYHVLISLMLSSQTKDEVNHAAMGRLKEHGLTIENICNTS  186 (378)
Q Consensus       107 p~~~~e~~~~l~~~~~~~~apvd~~G~~~~~~~~~~~~~~pF~~Lv~~iLsqqt~~~~~~~~~~~L~~~~pt~e~la~a~  186 (378)
                      .+...++++.|.+..+....+.              +..+||++||++||||||+++++..++.+|++.|+|+++++.++
T Consensus         4 ~~~~~~~~~~l~~~y~~~~~~l--------------~~~dp~~vLVs~iLsqqT~~~~v~~~~~~l~~~~pt~~~la~~~   69 (214)
T d1orna_           4 KQQIRYCLDEMAKMFPDAHCEL--------------VHRNPFELLIAVVLSAQCTDALVNKVTKRLFEKYRTPHDYIAVP   69 (214)
T ss_dssp             HHHHHHHHHHHHHHCTTCCCCS--------------CCSSHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCCSHHHHHSSC
T ss_pred             HHHHHHHHHHHHHHCCCCCCCC--------------CCCCHHHHHHHHHHHhcChHHHHHHHHhhhhcccCchhhhhhcc
Confidence            3556788888888765443321              12359999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhcccCChHHHHHHHHHHHHHHHHhcCCCchhhHHHHhcCCCccHHHHHHHHHHHhccccccCCCCCCCCCCCc
Q psy4002         187 EDVLGKLIIPVGFWKTKAKHIKMASDILKKNYNNDIPNTIELLCKLPGVGPKMAHLCMNHAWGIVTGIGKDESRQPILSP  266 (378)
Q Consensus       187 ~e~L~~~i~~~Gf~~~KA~~I~~lA~~i~e~y~g~ip~~~e~L~~LpGVGpktA~~~l~~a~~r~~~i~~~~~~~~~~~~  266 (378)
                      ++++.++|+++|||++||++|+.+|+.|.++|+|.+|.++++|.+|||||++||+++|+|+|++                
T Consensus        70 ~~e~~~~i~~~g~y~~ka~~l~~~a~~i~~~~~g~vp~~~~~L~~LpGVG~kTA~~il~~a~~~----------------  133 (214)
T d1orna_          70 LEELEQDIRSIGLYRNKARNIQKLCAMLIDKYNGEVPRDRDELMKLPGVGRKTANVVVSVAFGV----------------  133 (214)
T ss_dssp             HHHHHHHTGGGSSHHHHHHHHHHHHHHHHHHSTTSCCSCHHHHTTSTTCCHHHHHHHHHHHHCC----------------
T ss_pred             HHHhhhhhhhhhhhhHHHHHHHHHhhhHHHHhCCCCCCCHHHHHhCcCcccchHHHHHHHHhcC----------------
Confidence            9999999999999999999999999999999999999999999999999999999999999996                


Q ss_pred             chhhhhhhhhHHhhhccccCCccccchHHHHHHHHhCCCCCCCCHHHHHHHHHhcCCcccHHHHHHHHHHhcchhccCCC
Q psy4002         267 SSRQISRSELICVRKCEKKIPQLCVDVHVHRISHRLGWTKVFKTPEDTRKELESWLPESLWSEVNHLLVGFGQQICKSQR  346 (378)
Q Consensus       267 ~~~~~~~~~~~~~~~~~~~~~~~~VD~hv~Ri~~Rlg~~~~~~~~~~~~~~le~~lP~~~~~~~~~~Lv~~G~~iC~~~~  346 (378)
                                          ++|+||+||+||+.|+||+....++..++..+++++|.+.|+.+|++||+||+.||++++
T Consensus       134 --------------------~~~~VDtnv~RV~~Rlg~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~l~~~G~~iC~~~~  193 (214)
T d1orna_         134 --------------------PAIAVDTHVERVSKRLGFCRWDDSVLEVEKTLMKIIPKEEWSITHHRMIFFGRYHCKAQS  193 (214)
T ss_dssp             --------------------CCCCCCHHHHHHHHHHTSSCTTCCHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTSCSSC
T ss_pred             --------------------CcccccchHHHHHHHHHHhhcccchhhhhhhhhhcCccccHHHHHHHHHHHHHHHCcCCC
Confidence                                566799999999999999986778889999999999999999999999999999999999


Q ss_pred             CCCCCCCCccCCccccccc
Q psy4002         347 PSCETCLNKDLCPQGKKEL  365 (378)
Q Consensus       347 P~C~~Cpl~~~C~~~~~~~  365 (378)
                      |.|+.|||++.|++|.+..
T Consensus       194 P~C~~Cpl~~~C~~~~k~~  212 (214)
T d1orna_         194 PQCPSCPLLHLCREGKKRM  212 (214)
T ss_dssp             CCGGGCTTGGGCHHHHHHH
T ss_pred             CCCCCCCCcccChhhcccc
Confidence            9999999999999997643
>d2abka_ a.96.1.1 (A:) Endonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1keaa_ a.96.1.2 (A:) Thymine-DNA glycosylase {Archaeon Methanobacterium thermoformicicum [TaxId: 145262]} Back     information, alignment and structure
>d1kg2a_ a.96.1.2 (A:) Catalytic domain of MutY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1rrqa1 a.96.1.2 (A:9-229) Catalytic domain of MutY {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1pu6a_ a.96.1.5 (A:) 3-Methyladenine DNA glycosylase III (MagIII) {Helicobacter pylori [TaxId: 210]} Back     information, alignment and structure
>d1ngna_ a.96.1.2 (A:) Mismatch-specific thymine glycosylase domain of the methyl-GpG binding protein mbd4 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2noha1 a.96.1.3 (A:136-325) 8-oxoguanine glycosylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mpga1 a.96.1.3 (A:100-282) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nkua_ a.96.1.4 (A:) 3-Methyladenine DNA glycosylase I (Tag) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fmpa1 a.60.6.1 (A:10-91) DNA polymerase beta, N-terminal (8 kD)-domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bcqa1 a.60.6.1 (A:252-327) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dgsa1 a.60.2.2 (A:401-581) NAD+-dependent DNA ligase, domain 3 {Thermus filiformis [TaxId: 276]} Back     information, alignment and structure
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]} Back     information, alignment and structure
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1szpa1 a.60.4.1 (A:81-144) DNA repair protein Rad51, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1jmsa1 a.60.6.1 (A:148-242) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2edua1 a.60.2.7 (A:8-98) KIF22, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1vdda_ e.49.1.1 (A:) Recombination protein RecR {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d1b22a_ a.60.4.1 (A:) DNA repair protein Rad51, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3bzka1 a.60.2.6 (A:474-563) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure