Psyllid ID: psy4005

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200--
Protein Sequence
MYLCFANRIFYYYLEPHVLLFRRPKQPTPTSCSCGNNSVQEESAYGKFEFCRAAAAPSLIPVSSCLLAFTVSSFSGKTTTMSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLHLPGNENWVKNRYETLVRLRGKRDFSVLSQQDKQGGHVGYARLKCCEHHKRGSTQDLKIPEQR
Secondary Structure (PSIPRED)
ccEEEEcEEEEEEEccEEEEEEcccccccccccccccccccHHHcHHHHHHHHccccccccccccccccccccccccccccccccEEEccccccccEEEEEEEccHHHHHHccccccccHHHHHHHcccccccEEEEEEcccccEEEEEcccccccccccccccHHHHHHHHccccccEEEEEHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHccccccccccccccccccccccccccHHHHccccHHHHHHccccccccccccEEEEEEEEcEEEccccccHHcEEcccEEEcccEEccEEccHHHHccccccccccHHHHHHHcccccccccccccccccccEEEEccEcccccccccccccHHHHHHHHccccEEEEEEccHcccccccccccccccc
Coil and Loop (DISEMBL)
MYLCFANRIFYYylephvllfrrpkqptptscscgnnsvqeesaygkfefcraaaapslipvsSCLLAFTvssfsgktttmsaddirysdkyeddnyiyrhvmlppdlakqvpkthlMTETEWrnlgvqqspgwIHYMlhlpgnenwvKNRYETLVRLrgkrdfsvlsqqdkqgghvgyarlkccehhkrgstqdlkipeqr
Flexible Loop (DISEMBL)
MYLCFANRIFYYYLEPHVLLFRRPKQPTPTSCSCGNNSVQEESAYGKFEFCRAAAAPSLIPVSSCLLAFTVSsfsgktttmsaddirysdKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLHLPGNENWVKNRYETLVRLRGKRDfsvlsqqdkqgghVGYARLKCcehhkrgstqdlkipeqr
Low Complexity Region (SEG)
MYLCFANRIFYYYLEPHVLLFRRPKQPTPTSCSCGNNSVQEESAYGKFEFCRAAAAPSLIPVSSCLLAFTVSSFSGKTTTMSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLHLPGNENWVKNRYETLVRLRGKRDFSVLSQQDKQGGHVGYARLKCCEHHKRGSTQDLKIPEQR
Disordered region (IsUnstruct)
*YLCFANRIFYYYLEPHVLLFRR*******************SAYGKFEFCRAAAAPSLIPVSSCLLAFTVSSFSGKTTTMSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLHLPGNENWVKNRYETLVRLRGKRDFSVLSQQDKQGGHVGYARLKCCE****************
Disordered Region (DISOPRED)
*YLCFANRIFYYYLEPHVLL*******************************RAAAAPSLIPVSSCLLAFTVSSFS****TMSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLHLPGNENWVKNRYETL***********************YARLKCCEH***************
Disordered Region (DISEMBL)
MYLCFANRIFYYYLEPHVLLFRRPK**************QEESAYGKFEFCRAAAAPSLIPVSSCLLAFTVSSFSGKTTTMSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLHLPGNENWVKNRYETLVRLRGKRDFSVLSQQDKQGGHVGYARLKCCEHHKRGSTQDLKIPEQR
Disordered Region (DISPRO)
MYLCFANRIFYYYLEPHVLLFRRPKQPTPTSCSCGNNSVQ*ESAYGKFEFCRAAAAPSLIPVSSCLLAFTVSSFSGKTTTMSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLHLPGNENWVKNRYETLVRLRGKRDFSVLSQQDKQGGHVGYARLKCCEH***************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MYLCFANRIFYYYLEPHVLLFRRPKQPTPTSCSCGNNSVQEESAYGKFEFCRAAAAPSLIPVSSCLLAFTVSSFSGKTTTMSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLHLPGNENWVKNRYETLVRLRGKRDFSVLSQQDKQGGHVGYARLKCCEHHKRGSTQDLKIPEQR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	202	2.2.26 [Sep-21-2011]
P61025	79	Cyclin-dependent kinases	yes	N/A	0.306	0.784	0.709	8e-21
P61024	79	Cyclin-dependent kinases	yes	N/A	0.306	0.784	0.709	8e-21
Q0P5A5	79	Cyclin-dependent kinases	yes	N/A	0.306	0.784	0.709	8e-21
Q91879	79	Cyclin-dependent kinases	N/A	N/A	0.306	0.784	0.709	3e-20
P56390	79	Cyclin-dependent kinases	no	N/A	0.306	0.784	0.693	1e-19
P33552	79	Cyclin-dependent kinases	no	N/A	0.306	0.784	0.693	2e-19
Q2KJI1	79	Cyclin-dependent kinases	no	N/A	0.306	0.784	0.693	2e-19
P41384	76	Cyclin-dependent kinases	N/A	N/A	0.306	0.815	0.693	2e-19
A8XMF2	94	Cyclin-dependent kinases	N/A	N/A	0.311	0.670	0.634	4e-19
Q24152	74	Cyclin-dependent kinases	no	N/A	0.297	0.810	0.683	8e-19

>sp|P61025|CKS1_MOUSE Cyclin-dependent kinases regulatory subunit 1 OS=Mus musculus GN=Cks1b PE=2 SV=1

 Score =  100 bits (248), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 52/62 (83%)

Query: 81  MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
           MS   I YSDKY+D+ + YRHVMLP D+AK VPKTHLM+E+EWRNLGVQQS GW+HYM+H
Sbjct: 1   MSHKQIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIH 60

Query: 141 LP 142
            P
Sbjct: 61  EP 62

Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.
Mus musculus (taxid: 10090)

>sp|P61024|CKS1_HUMAN Cyclin-dependent kinases regulatory subunit 1 OS=Homo sapiens GN=CKS1B PE=1 SV=1

 Score =  100 bits (248), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 52/62 (83%)

Query: 81  MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
           MS   I YSDKY+D+ + YRHVMLP D+AK VPKTHLM+E+EWRNLGVQQS GW+HYM+H
Sbjct: 1   MSHKQIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIH 60

Query: 141 LP 142
            P
Sbjct: 61  EP 62

Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.

Homo sapiens (taxid: 9606)

>sp|Q0P5A5|CKS1_BOVIN Cyclin-dependent kinases regulatory subunit 1 OS=Bos taurus GN=CKS1B PE=3 SV=1

 Score =  100 bits (248), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 52/62 (83%)

Query: 81  MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
           MS   I YSDKY+D+ + YRHVMLP D+AK VPKTHLM+E+EWRNLGVQQS GW+HYM+H
Sbjct: 1   MSHKQIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIH 60

Query: 141 LP 142
            P
Sbjct: 61  EP 62

Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.

Bos taurus (taxid: 9913)

>sp|Q91879|CKS2_XENLA Cyclin-dependent kinases regulatory subunit 2 OS=Xenopus laevis GN=cks2 PE=3 SV=1

 Score = 98.6 bits (244), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 52/62 (83%)

Query: 81  MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
           MS  +I YSDKY D+++ YRHVMLP +LAKQVPKTHLM+E EWR LGVQQS GW+HYM+H
Sbjct: 1   MSYKNIYYSDKYTDEHFEYRHVMLPKELAKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIH 60

Query: 141 LP 142
            P
Sbjct: 61  EP 62

Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.

Xenopus laevis (taxid: 8355)

>sp|P56390|CKS2_MOUSE Cyclin-dependent kinases regulatory subunit 2 OS=Mus musculus GN=Cks2 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 51/62 (82%)

Query: 81  MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
           M+   I YSDKY D++Y YRHVMLP +L+KQVPKTHLM+E EWR LGVQQS GW+HYM+H
Sbjct: 1   MAHKQIYYSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIH 60

Query: 141 LP 142
            P
Sbjct: 61  EP 62

Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.

Mus musculus (taxid: 10090)

>sp|P33552|CKS2_HUMAN Cyclin-dependent kinases regulatory subunit 2 OS=Homo sapiens GN=CKS2 PE=1 SV=1

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 51/62 (82%)

Query: 81  MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
           M+   I YSDKY D++Y YRHVMLP +L+KQVPKTHLM+E EWR LGVQQS GW+HYM+H
Sbjct: 1   MAHKQIYYSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIH 60

Query: 141 LP 142
            P
Sbjct: 61  EP 62

Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.

Homo sapiens (taxid: 9606)

>sp|Q2KJI1|CKS2_BOVIN Cyclin-dependent kinases regulatory subunit 2 OS=Bos taurus GN=CKS2 PE=3 SV=1

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 51/62 (82%)

Query: 81  MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
           M+   I YSDKY D++Y YRHVMLP +L+KQVPKTHLM+E EWR LGVQQS GW+HYM+H
Sbjct: 1   MAHKQIYYSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIH 60

Query: 141 LP 142
            P
Sbjct: 61  EP 62

Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.

Bos taurus (taxid: 9913)

>sp|P41384|CKS1_PATVU Cyclin-dependent kinases regulatory subunit OS=Patella vulgata PE=3 SV=1

 Score = 95.9 bits (237), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 50/62 (80%)

Query: 81  MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
           MSA  I YSDKY D+++ YRHVMLP D+AK VPK HLM+E EWR++GVQQS GWIHYM H
Sbjct: 1   MSARQIYYSDKYFDEDFEYRHVMLPKDIAKMVPKNHLMSEAEWRSIGVQQSHGWIHYMKH 60

Query: 141 LP 142
            P
Sbjct: 61  EP 62

Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.

Patella vulgata (taxid: 6465)

>sp|A8XMF2|CKS1_CAEBR Cyclin-dependent kinases regulatory subunit OS=Caenorhabditis briggsae GN=cks-1 PE=3 SV=1

 Score = 94.7 bits (234), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 40/63 (63%), Positives = 50/63 (79%)

Query: 80  TMSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYML 139
           T  ++D  YS+KYEDD Y YRHV +  D+AK +PK  LM+ETEWR+LG+QQSPGWIHYM+
Sbjct: 2   TTGSNDFYYSNKYEDDEYEYRHVHVTKDVAKLIPKNRLMSETEWRSLGIQQSPGWIHYMI 61

Query: 140 HLP 142
           H P
Sbjct: 62  HGP 64

Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function. Has a role in the exit from M phase during early mitotic cell division. More specifically, thought to act by the degrading B-type cyclins that causes breakdown of nuclear envelope and exit mitosis.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q24152|CKS1_DROME Cyclin-dependent kinases regulatory subunit OS=Drosophila melanogaster GN=Cks30A PE=3 SV=1

 Score = 93.6 bits (231), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 41/60 (68%), Positives = 49/60 (81%)

Query: 83  ADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLHLP 142
           + DI YSDKY D+ + YRHV+LP +L K VPKTHLMTE EWR++GVQQS GWIHYM+H P
Sbjct: 2   SKDIYYSDKYYDEQFEYRHVVLPKELVKMVPKTHLMTEAEWRSIGVQQSRGWIHYMIHKP 61

Binds to the catalytic subunit of the cyclin dependent kinases (Cdc2 and Cdc2c) and is essential for their biological function.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
195110625	93	GI22832 [Drosophila mojavensis] gi|19391	0.306	0.666	0.790	5e-23
195036780	99	GH19019 [Drosophila grimshawi] gi|193894	0.306	0.626	0.774	7e-23
21355377	96	Cyclin-dependent kinase subunit 85A, iso	0.306	0.645	0.790	1e-22
225581148	91	GA22037 [Drosophila miranda]	0.306	0.681	0.774	1e-22
269146684	89	cyclin-dependent protein kinase regulato	0.306	0.696	0.774	2e-22
66534763	95	PREDICTED: cyclin-dependent kinases regu	0.306	0.652	0.758	3e-22
380028381	95	PREDICTED: cyclin-dependent kinases regu	0.306	0.652	0.758	3e-22
156548690	92	PREDICTED: probable cyclin-dependent kin	0.306	0.673	0.758	4e-22
340727881	95	PREDICTED: cyclin-dependent kinases regu	0.306	0.652	0.758	4e-22
195499184	96	GE24833 [Drosophila yakuba] gi|194182942	0.306	0.645	0.774	5e-22

>gi|195110625|ref|XP_001999880.1| GI22832 [Drosophila mojavensis] gi|193916474|gb|EDW15341.1| GI22832 [Drosophila mojavensis]

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 49/62 (79%), Positives = 55/62 (88%)

Query: 81  MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
           M AD I+YS+KY DD Y YRHV+LPPDLAK VPK+HLMTETEWRNLGVQQSPGW+HYM+H
Sbjct: 1   MPADQIQYSEKYFDDKYEYRHVILPPDLAKHVPKSHLMTETEWRNLGVQQSPGWVHYMMH 60

Query: 141 LP 142
            P
Sbjct: 61  AP 62

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195036780|ref|XP_001989846.1| GH19019 [Drosophila grimshawi] gi|193894042|gb|EDV92908.1| GH19019 [Drosophila grimshawi]

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 48/62 (77%), Positives = 55/62 (88%)

Query: 81  MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
           M AD I+YS+KY DD + YRHV+LPPDLAK VPK+HLMTETEWRNLGVQQSPGW+HYM+H
Sbjct: 1   MPADQIQYSEKYFDDKFEYRHVILPPDLAKHVPKSHLMTETEWRNLGVQQSPGWVHYMMH 60

Query: 141 LP 142
            P
Sbjct: 61  AP 62

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|21355377|ref|NP_649817.1| Cyclin-dependent kinase subunit 85A, isoform A [Drosophila melanogaster] gi|386765351|ref|NP_001246992.1| Cyclin-dependent kinase subunit 85A, isoform B [Drosophila melanogaster] gi|442618039|ref|NP_001262383.1| Cyclin-dependent kinase subunit 85A, isoform C [Drosophila melanogaster] gi|194903740|ref|XP_001980929.1| GG17431 [Drosophila erecta] gi|7299072|gb|AAF54272.1| Cyclin-dependent kinase subunit 85A, isoform A [Drosophila melanogaster] gi|20976840|gb|AAM27495.1| GM01344p [Drosophila melanogaster] gi|190652632|gb|EDV49887.1| GG17431 [Drosophila erecta] gi|220950320|gb|ACL87703.1| Cks85A-PA [synthetic construct] gi|220959304|gb|ACL92195.1| Cks85A-PA [synthetic construct] gi|383292575|gb|AFH06310.1| Cyclin-dependent kinase subunit 85A, isoform B [Drosophila melanogaster] gi|440217209|gb|AGB95765.1| Cyclin-dependent kinase subunit 85A, isoform C [Drosophila melanogaster]

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 49/62 (79%), Positives = 55/62 (88%)

Query: 81  MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
           M AD I+YS+KY DDN+ YRHV+LPPDLAK VPK HLMTETEWRNLGVQQSPGW+HYM+H
Sbjct: 1   MPADQIQYSEKYFDDNFEYRHVILPPDLAKHVPKAHLMTETEWRNLGVQQSPGWVHYMVH 60

Query: 141 LP 142
            P
Sbjct: 61  AP 62

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225581148|gb|ACN94717.1| GA22037 [Drosophila miranda]

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 48/62 (77%), Positives = 55/62 (88%)

Query: 81  MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
           MSAD I+YS+KY DD + YRHV+LP DLAK VPK HLMTETEWRNLGVQQSPGW+HYM+H
Sbjct: 1   MSADQIQYSEKYFDDKFEYRHVILPLDLAKHVPKAHLMTETEWRNLGVQQSPGWVHYMMH 60

Query: 141 LP 142
           +P
Sbjct: 61  VP 62

Source: Drosophila miranda

Species: Drosophila miranda

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|269146684|gb|ACZ28288.1| cyclin-dependent protein kinase regulator [Simulium nigrimanum]

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 48/62 (77%), Positives = 55/62 (88%)

Query: 81  MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
           M AD I+YS+KY +D + +RHV+LPPDLAK VPKTHLMTETEWRNLGVQQSPGWIHYM+H
Sbjct: 1   MPADQIQYSEKYNNDEFEFRHVILPPDLAKNVPKTHLMTETEWRNLGVQQSPGWIHYMIH 60

Query: 141 LP 142
            P
Sbjct: 61  AP 62

Source: Simulium nigrimanum

Species: Simulium nigrimanum

Genus: Simulium

Family: Simuliidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66534763|ref|XP_624975.1| PREDICTED: cyclin-dependent kinases regulatory subunit 1-like [Apis mellifera]

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 55/62 (88%)

Query: 81  MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
           M AD I+YS+KY DD Y YRHV+LP DLA+ VPKTHLM+ETEWRNLGVQQSPGW+HYM+H
Sbjct: 1   MPADQIQYSEKYNDDKYEYRHVILPADLARHVPKTHLMSETEWRNLGVQQSPGWVHYMMH 60

Query: 141 LP 142
           +P
Sbjct: 61  VP 62

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028381|ref|XP_003697882.1| PREDICTED: cyclin-dependent kinases regulatory subunit 1-like [Apis florea]

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 55/62 (88%)

Query: 81  MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
           M AD I+YS+KY DD Y YRHV+LP DLA+ VPKTHLM+ETEWRNLGVQQSPGW+HYM+H
Sbjct: 1   MPADQIQYSEKYNDDKYEYRHVILPADLARHVPKTHLMSETEWRNLGVQQSPGWVHYMMH 60

Query: 141 LP 142
           +P
Sbjct: 61  VP 62

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156548690|ref|XP_001602564.1| PREDICTED: probable cyclin-dependent kinases regulatory subunit-like [Nasonia vitripennis]

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 55/62 (88%)

Query: 81  MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
           M AD I+YS+KY DD Y YRHV+LPPD+ KQVPK+HLMTE+EWRNLGVQQSPGW+HYM+H
Sbjct: 1   MPADQIQYSEKYTDDKYEYRHVILPPDIGKQVPKSHLMTESEWRNLGVQQSPGWVHYMMH 60

Query: 141 LP 142
            P
Sbjct: 61  GP 62

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727881|ref|XP_003402263.1| PREDICTED: cyclin-dependent kinases regulatory subunit 1-like [Bombus terrestris] gi|350405817|ref|XP_003487561.1| PREDICTED: cyclin-dependent kinases regulatory subunit 1-like [Bombus impatiens]

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 55/62 (88%)

Query: 81  MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
           M AD I+YS+KY DD Y YRHV+LP DLA+ VPKTHLM+ETEWRNLGVQQSPGW+HYM+H
Sbjct: 1   MPADQIQYSEKYNDDKYEYRHVILPVDLARHVPKTHLMSETEWRNLGVQQSPGWVHYMMH 60

Query: 141 LP 142
           +P
Sbjct: 61  VP 62

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195499184|ref|XP_002096841.1| GE24833 [Drosophila yakuba] gi|194182942|gb|EDW96553.1| GE24833 [Drosophila yakuba]

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 48/62 (77%), Positives = 54/62 (87%)

Query: 81  MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
           M AD I+YS+KY DD + YRHV+LPPDLAK VPK HLMTETEWRNLGVQQSPGW+HYM+H
Sbjct: 1   MPADQIQYSEKYFDDEFEYRHVILPPDLAKHVPKAHLMTETEWRNLGVQQSPGWVHYMVH 60

Query: 141 LP 142
            P
Sbjct: 61  AP 62

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	202
FB|FBgn0037613	96	Cks85A "Cyclin-dependent kinas	0.306	0.645	0.790	3.6e-25
ZFIN|ZDB-GENE-040801-112	79	cks1b "CDC28 protein kinase re	0.306	0.784	0.741	4.8e-23
UNIPROTKB|Q5T179	67	CKS1B "Cyclin-dependent kinase	0.311	0.940	0.714	2.1e-22
UNIPROTKB|F6ULB4	518	FLAD1 "Uncharacterized protein	0.356	0.138	0.652	2.3e-22
UNIPROTKB|Q0P5A5	79	CKS1B "Cyclin-dependent kinase	0.306	0.784	0.709	9e-22
UNIPROTKB|P61024	79	CKS1B "Cyclin-dependent kinase	0.306	0.784	0.709	9e-22
UNIPROTKB|I3L6M9	79	CKS1B "Uncharacterized protein	0.306	0.784	0.709	9e-22
MGI|MGI:1889208	79	Cks1b "CDC28 protein kinase 1b	0.306	0.784	0.709	9e-22
RGD|2321453	92	LOC100364205 "CDC28 protein ki	0.306	0.673	0.709	1.9e-21
RGD|1561797	79	Cks1b "CDC28 protein kinase re	0.306	0.784	0.693	1e-20

FB|FBgn0037613 Cks85A "Cyclin-dependent kinase subunit 85A" [Drosophila melanogaster (taxid:7227)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 49/62 (79%), Positives = 55/62 (88%)

Query:    81 MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
             M AD I+YS+KY DDN+ YRHV+LPPDLAK VPK HLMTETEWRNLGVQQSPGW+HYM+H
Sbjct:     1 MPADQIQYSEKYFDDNFEYRHVILPPDLAKHVPKAHLMTETEWRNLGVQQSPGWVHYMVH 60

Query:   141 LP 142
              P
Sbjct:    61 AP 62

GO:0016538 "cyclin-dependent protein serine/threonine kinase regulator activity" evidence=ISS

GO:0007067 "mitosis" evidence=IMP;NAS

GO:0019005 "SCF ubiquitin ligase complex" evidence=IDA

GO:0007113 "endomitotic cell cycle" evidence=IMP

GO:0000278 "mitotic cell cycle" evidence=IMP

ZFIN|ZDB-GENE-040801-112 cks1b "CDC28 protein kinase regulatory subunit 1B" [Danio rerio (taxid:7955)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 46/62 (74%), Positives = 53/62 (85%)

Query:    81 MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
             MS   I YSDKY+DD + YRHVMLP D+AK+VPKTHLM+ETEWRNLGVQQS GW+HYM+H
Sbjct:     1 MSHKQIYYSDKYDDDKFEYRHVMLPKDIAKRVPKTHLMSETEWRNLGVQQSQGWVHYMIH 60

Query:   141 LP 142
              P
Sbjct:    61 QP 62

GO:0016538 "cyclin-dependent protein serine/threonine kinase regulator activity" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q5T179 CKS1B "Cyclin-dependent kinases regulatory subunit 1" [Homo sapiens (taxid:9606)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 45/63 (71%), Positives = 53/63 (84%)

Query:    81 MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
             MS   I YSDKY+D+ + YRHVMLP D+AK VPKTHLM+E+EWRNLGVQQS GW+HYM+H
Sbjct:     1 MSHKQIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIH 60

Query:   141 LPG 143
              PG
Sbjct:    61 EPG 63

GO:0007049 "cell cycle" evidence=IEA

GO:0016538 "cyclin-dependent protein serine/threonine kinase regulator activity" evidence=IEA

UNIPROTKB|F6ULB4 FLAD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 266 (98.7 bits), Expect = 2.3e-22, P = 2.3e-22
 Identities = 47/72 (65%), Positives = 55/72 (76%)

Query:    81 MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
             MS   I YSDKY+D+ + YRHVMLP D+AK VPKTHLM+E+EWRNLGVQQS GW+HYM+H
Sbjct:     1 MSHKQIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIH 60

Query:   141 LPGNENWVKNRY 152
              PG      N Y
Sbjct:    61 EPGGHTQDTNTY 72

GO:0016538 "cyclin-dependent protein serine/threonine kinase regulator activity" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0006777 "Mo-molybdopterin cofactor biosynthetic process" evidence=IEA

UNIPROTKB|Q0P5A5 CKS1B "Cyclin-dependent kinases regulatory subunit 1" [Bos taurus (taxid:9913)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 44/62 (70%), Positives = 52/62 (83%)

Query:    81 MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
             MS   I YSDKY+D+ + YRHVMLP D+AK VPKTHLM+E+EWRNLGVQQS GW+HYM+H
Sbjct:     1 MSHKQIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIH 60

Query:   141 LP 142
              P
Sbjct:    61 EP 62

GO:0051301 "cell division" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0016538 "cyclin-dependent protein serine/threonine kinase regulator activity" evidence=IEA

UNIPROTKB|P61024 CKS1B "Cyclin-dependent kinases regulatory subunit 1" [Homo sapiens (taxid:9606)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 44/62 (70%), Positives = 52/62 (83%)

Query:    81 MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
             MS   I YSDKY+D+ + YRHVMLP D+AK VPKTHLM+E+EWRNLGVQQS GW+HYM+H
Sbjct:     1 MSHKQIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIH 60

Query:   141 LP 142
              P
Sbjct:    61 EP 62

GO:0016538 "cyclin-dependent protein serine/threonine kinase regulator activity" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0000079 "regulation of cyclin-dependent protein serine/threonine kinase activity" evidence=TAS

GO:0008283 "cell proliferation" evidence=TAS

GO:0000080 "G1 phase of mitotic cell cycle" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|I3L6M9 CKS1B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 44/62 (70%), Positives = 52/62 (83%)

Query:    81 MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
             MS   I YSDKY+D+ + YRHVMLP D+AK VPKTHLM+E+EWRNLGVQQS GW+HYM+H
Sbjct:     1 MSHKQIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIH 60

Query:   141 LP 142
              P
Sbjct:    61 EP 62

GO:0016538 "cyclin-dependent protein serine/threonine kinase regulator activity" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

MGI|MGI:1889208 Cks1b "CDC28 protein kinase 1b" [Mus musculus (taxid:10090)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 44/62 (70%), Positives = 52/62 (83%)

Query:    81 MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
             MS   I YSDKY+D+ + YRHVMLP D+AK VPKTHLM+E+EWRNLGVQQS GW+HYM+H
Sbjct:     1 MSHKQIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIH 60

Query:   141 LP 142
              P
Sbjct:    61 EP 62

GO:0007049 "cell cycle" evidence=IEA

GO:0016538 "cyclin-dependent protein serine/threonine kinase regulator activity" evidence=IEA

GO:0051301 "cell division" evidence=IEA

RGD|2321453 LOC100364205 "CDC28 protein kinase 1B-like" [Rattus norvegicus (taxid:10116)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 44/62 (70%), Positives = 51/62 (82%)

Query:    81 MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
             MS   I YSDKY+D+ + YRHVMLP D+AK VPKTHLM E+EWRNLGVQQS GW+HYM+H
Sbjct:    14 MSHKQIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMFESEWRNLGVQQSQGWVHYMIH 73

Query:   141 LP 142
              P
Sbjct:    74 EP 75

GO:0007049 "cell cycle" evidence=IEA

GO:0016538 "cyclin-dependent protein serine/threonine kinase regulator activity" evidence=IEA

RGD|1561797 Cks1b "CDC28 protein kinase regulatory subunit 1B" [Rattus norvegicus (taxid:10116)]

 Score = 244 (91.0 bits), Expect = 1.0e-20, P = 1.0e-20
 Identities = 43/62 (69%), Positives = 51/62 (82%)

Query:    81 MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
             MS   I YSDKY+D+ + YRHVMLP  +AK VPKTHLM+E+EWRNLGVQQS GW+HYM+H
Sbjct:     1 MSHKQIYYSDKYDDEEFEYRHVMLPIAIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIH 60

Query:   141 LP 142
              P
Sbjct:    61 EP 62

GO:0007049 "cell cycle" evidence=IEA

GO:0016538 "cyclin-dependent protein serine/threonine kinase regulator activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0P5A5	CKS1_BOVIN	No assigned EC number	0.7096	0.3069	0.7848	yes	N/A
Q6PS57	CKS1_ORYSJ	No assigned EC number	0.6140	0.2821	0.6333	yes	N/A
Q9SJJ5	CKS2_ARATH	No assigned EC number	0.5964	0.2821	0.6867	yes	N/A
P61025	CKS1_MOUSE	No assigned EC number	0.7096	0.3069	0.7848	yes	N/A
P61024	CKS1_HUMAN	No assigned EC number	0.7096	0.3069	0.7848	yes	N/A
Q17868	CKS1_CAEEL	No assigned EC number	0.5873	0.3118	0.6702	yes	N/A
B0G102	CKS1_DICDI	No assigned EC number	0.5272	0.2722	0.6707	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	202
pfam01111	70	pfam01111, CKS, Cyclin-dependent kinase regulatory	1e-33
smart01084	70	smart01084, CKS, Cyclin-dependent kinase regulator	1e-28
PTZ00453	96	PTZ00453, PTZ00453, cyclin-dependent kinase; Provi	2e-26
PLN00010	86	PLN00010, PLN00010, cyclin-dependent kinases regul	1e-25

>gnl|CDD|144631 pfam01111, CKS, Cyclin-dependent kinase regulatory subunit

 Score =  114 bits (288), Expect = 1e-33
 Identities = 37/58 (63%), Positives = 48/58 (82%)

Query: 85  DIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLHLP 142
           +I YSDKY DD Y YRHV+LP ++AK++PK  L++E EWR LG+QQSPGW+HYM+H P
Sbjct: 1   EIYYSDKYFDDYYEYRHVILPKEIAKKIPKDKLLSEMEWRGLGIQQSPGWVHYMVHEP 58

Length = 70

>gnl|CDD|198152 smart01084, CKS, Cyclin-dependent kinase regulatory subunit

 Score =  101 bits (254), Expect = 1e-28
 Identities = 38/58 (65%), Positives = 45/58 (77%)

Query: 85  DIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLHLP 142
            I YSDKYEDD Y YRHV+LP ++AK VPK  L++E EWR LG+QQS GW HYM+H P
Sbjct: 1   PIYYSDKYEDDEYEYRHVILPKEIAKLVPKIRLLSENEWRKLGIQQSKGWEHYMIHKP 58

Cyclin-dependent kinase regulatory subunit. Length = 70

>gnl|CDD|185632 PTZ00453, PTZ00453, cyclin-dependent kinase; Provisional

 Score = 97.0 bits (241), Expect = 2e-26
 Identities = 38/60 (63%), Positives = 45/60 (75%)

Query: 83  ADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLHLP 142
              I YSDKY DD Y YRHV+LP D A+ VP++ LM+E+EWR LGVQQS GW HYM+H P
Sbjct: 25  QSKILYSDKYYDDEYEYRHVILPKDFARLVPRSRLMSESEWRQLGVQQSVGWRHYMIHKP 84

Length = 96

>gnl|CDD|215027 PLN00010, PLN00010, cyclin-dependent kinases regulatory subunit; Provisional

 Score = 94.2 bits (234), Expect = 1e-25
 Identities = 35/57 (61%), Positives = 46/57 (80%)

Query: 86  IRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLHLP 142
           I+YS+KY DD Y YRHV+LPP++AK +PK  L++E EWR +GVQQS GW+HY +H P
Sbjct: 4   IQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRP 60

Length = 86

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	202
KOG3484|consensus	91		100.0
PF01111	70	CKS: Cyclin-dependent kinase regulatory subunit; I	100.0
PLN00010	86	cyclin-dependent kinases regulatory subunit; Provi	100.0
PTZ00453	96	cyclin-dependent kinase; Provisional	100.0
PLN00010	86	cyclin-dependent kinases regulatory subunit; Provi	90.73
KOG3484|consensus	91		90.25
PF01111	70	CKS: Cyclin-dependent kinase regulatory subunit; I	87.68

>KOG3484|consensus

Probab=100.00  E-value=7e-47  Score=287.99  Aligned_cols=76  Identities=55%  Similarity=0.926  Sum_probs=73.7

Q ss_pred             CCCCCeeecCCcCCCceeEEEEEcChHHHhhCCCCCCCCHHHHhhhccccCCCeeEeeecCCCceeEEEecccccc
Q psy4005          81 MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLHLPGNENWVKNRYETLV  156 (202)
Q Consensus        81 M~~~~I~YS~KY~DD~YEYRHViLPkel~K~VPK~rLLsE~EWR~LGIQQS~GW~HYmiHkPEPHILLFRRPl~~~  156 (202)
                      |..++|+||+||.||+||||||+|||+++|+|||+|||||+|||+||||||+||+|||||.|||||||||||++..
T Consensus         1 ~~~~qi~YS~kY~Dd~fEYRHV~Lpk~~~K~vPk~rllsE~EWR~lGvqQS~GW~hYmiH~PEpHIlLFrRp~~~~   76 (91)
T KOG3484|consen    1 MFMDQIYYSDKYFDDEFEYRHVMLPKEVAKLVPKNRLLSETEWRGLGVQQSLGWVHYMIHAPEPHILLFRRPLNYA   76 (91)
T ss_pred             CCccceecccccccccceeEEeecCHHHHhhCCccccccHHHHhhhCccccCCeeEEEecCCCceEEEEecccchH
Confidence            5679999999999999999999999999999999999999999999999999999999999999999999999775

>PF01111 CKS: Cyclin-dependent kinase regulatory subunit; InterPro: IPR000789 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=100.00  E-value=1.7e-45  Score=269.79  Aligned_cols=70  Identities=56%  Similarity=0.992  Sum_probs=55.8

Q ss_pred             CeeecCCcCCCceeEEEEEcChHHHhhCCCCCCCCHHHHhhhccccCCCeeEeeecCCCceeEEEecccc
Q psy4005          85 DIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLHLPGNENWVKNRYET  154 (202)
Q Consensus        85 ~I~YS~KY~DD~YEYRHViLPkel~K~VPK~rLLsE~EWR~LGIQQS~GW~HYmiHkPEPHILLFRRPl~  154 (202)
                      +|+||+||+||+||||||||||+++|++|+++||||+|||+||||||+||+|||+|+|||||||||||+|
T Consensus         1 ~I~YS~kY~Dd~yeYRhViLpk~~~k~vp~~~llsE~EWR~LGIqqS~GW~Hy~~h~pephiLlFrRp~n   70 (70)
T PF01111_consen    1 QIYYSDKYYDDEYEYRHVILPKEIAKLVPKDRLLSEEEWRGLGIQQSPGWEHYMIHKPEPHILLFRRPLN   70 (70)
T ss_dssp             G-EEE--EEBSSEEEEEEE--HHHHGTS-CCS---HHHHHHTT--S-TT-EEECETTSSTTEEEEEEECT
T ss_pred             CccccccccCCceEEEEEECCHHHHhhCccCcccCHHHHHhhCCccCCCcEEEEEeCCCCcEEEEecCCC
Confidence            5899999999999999999999999999999999999999999999999999999999999999999986

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. In eukaryotes, cyclin-dependent protein kinases interact with cyclins to regulate cell cycle progression, and are required for the G1 and G2 stages of cell division []. The proteins bind to a regulatory subunit, cyclin-dependent kinase regulatory subunit (CKS), which is essential for their function. This regulatory subunit is a small protein of 79 to 150 residues. In yeast (gene CKS1) and in fission yeast (gene suc1) a single isoform is known, while mammals have two highly related isoforms. The regulatory subunits exist as hexamers, formed by the symmetrical assembly of 3 interlocked homodimers, creating an unusual 12-stranded beta-barrel structure []. Through the barrel centre runs a 12A diameter tunnel, lined by 6 exposed helix pairs []. Six kinase units can be modelled to bind the hexameric structure, which may thus act as a hub for cyclin-dependent protein kinase multimerisation [, ].; GO: 0016538 cyclin-dependent protein kinase regulator activity, 0007049 cell cycle; PDB: 1CKS_C 3QY2_B 1QB3_C 1SCE_B 1PUC_A 1DKS_B 2AST_C 1BUH_B 1DKT_B 2ASS_C.

>PLN00010 cyclin-dependent kinases regulatory subunit; Provisional

Probab=100.00  E-value=4.4e-45  Score=276.75  Aligned_cols=77  Identities=47%  Similarity=0.881  Sum_probs=73.6

Q ss_pred             CCeeecCCcCCCceeEEEEEcChHHHhhCCCCCCCCHHHHhhhccccCCCeeEeeecCCCceeEEEecccccccCCC
Q psy4005          84 DDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLHLPGNENWVKNRYETLVRLRG  160 (202)
Q Consensus        84 ~~I~YS~KY~DD~YEYRHViLPkel~K~VPK~rLLsE~EWR~LGIQQS~GW~HYmiHkPEPHILLFRRPl~~~~l~g  160 (202)
                      ++|+||+||+||+||||||||||+++|+||+++||||+|||+||||||+||+|||+|+|||||||||||++..+..|
T Consensus         2 ~~I~YS~kY~Dd~yeYRhViLPk~~~k~ipk~~LL~E~EWR~LGIqqS~GW~Hy~~h~pEphILlFrRp~~~~~~~~   78 (86)
T PLN00010          2 GQIQYSEKYFDDTYEYRHVVLPPEVAKLLPKNRLLSENEWRAIGVQQSRGWVHYAIHRPEPHIMLFRRPLNYQQQQE   78 (86)
T ss_pred             CccEeCCceeCCCcEEEEEEeCHHHHHhCCcCcccCHHHHHHhccccCCCcEEeeecCCCceEEEEEccCCCCCccc
Confidence            57999999999999999999999999999999999999999999999999999999999999999999998876443

>PTZ00453 cyclin-dependent kinase; Provisional

Probab=100.00  E-value=9.2e-44  Score=273.91  Aligned_cols=74  Identities=54%  Similarity=0.936  Sum_probs=71.3

Q ss_pred             CCCCCeeecCCcCCCceeEEEEEcChHHHhhCCCCCCCCHHHHhhhccccCCCeeEeeecCCCceeEEEecccc
Q psy4005          81 MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLHLPGNENWVKNRYET  154 (202)
Q Consensus        81 M~~~~I~YS~KY~DD~YEYRHViLPkel~K~VPK~rLLsE~EWR~LGIQQS~GW~HYmiHkPEPHILLFRRPl~  154 (202)
                      +..++|+||+||+||+||||||||||+++|+||+++||||+|||+||||||+||+|||+|+|||||||||||++
T Consensus        23 ~~~~~I~YS~kY~DD~yEYRHViLPk~~~k~ipk~~LL~E~EWR~LGIqqS~GW~HY~~h~pEphILLFRRp~t   96 (96)
T PTZ00453         23 KLQSKILYSDKYYDDEYEYRHVILPKDFARLVPRSRLMSESEWRQLGVQQSVGWRHYMIHKPEPHVLLFKRPKT   96 (96)
T ss_pred             hccccceeCCceeCCCcEEEEEEeCHHHHHhCCCCccccHHHHHHhhhccCCCcEEeeecCCCCcEEEEecCCC
Confidence            34679999999999999999999999999999999999999999999999999999999999999999999974

>PLN00010 cyclin-dependent kinases regulatory subunit; Provisional

Probab=90.73  E-value=0.16  Score=39.43  Aligned_cols=16  Identities=50%  Similarity=0.918  Sum_probs=13.3

Q ss_pred             ecceEEeeeCCCCCCC
Q psy4005          14 LEPHVLLFRRPKQPTP   29 (202)
Q Consensus        14 ~~~~~~~~~~~~~~~~   29 (202)
                      -|||+||||||..-.+
T Consensus        60 pEphILlFrRp~~~~~   75 (86)
T PLN00010         60 PEPHIMLFRRPLNYQQ   75 (86)
T ss_pred             CCceEEEEEccCCCCC
Confidence            4999999999987554

>KOG3484|consensus

Probab=90.25  E-value=0.15  Score=39.91  Aligned_cols=13  Identities=69%  Similarity=1.244  Sum_probs=11.2

Q ss_pred             ecceEEeeeCCCC
Q psy4005          14 LEPHVLLFRRPKQ   26 (202)
Q Consensus        14 ~~~~~~~~~~~~~   26 (202)
                      -|||+||||||+.
T Consensus        62 PEpHIlLFrRp~~   74 (91)
T KOG3484|consen   62 PEPHILLFRRPLN   74 (91)
T ss_pred             CCceEEEEecccc
Confidence            3899999999874

>PF01111 CKS: Cyclin-dependent kinase regulatory subunit; InterPro: IPR000789 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=87.68  E-value=0.2  Score=37.41  Aligned_cols=12  Identities=75%  Similarity=1.328  Sum_probs=10.8

Q ss_pred             ecceEEeeeCCC
Q psy4005          14 LEPHVLLFRRPK   25 (202)
Q Consensus        14 ~~~~~~~~~~~~   25 (202)
                      -|||+||||||+
T Consensus        58 pephiLlFrRp~   69 (70)
T PF01111_consen   58 PEPHILLFRRPL   69 (70)
T ss_dssp             SSTTEEEEEEEC
T ss_pred             CCCcEEEEecCC
Confidence            489999999996

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. In eukaryotes, cyclin-dependent protein kinases interact with cyclins to regulate cell cycle progression, and are required for the G1 and G2 stages of cell division []. The proteins bind to a regulatory subunit, cyclin-dependent kinase regulatory subunit (CKS), which is essential for their function. This regulatory subunit is a small protein of 79 to 150 residues. In yeast (gene CKS1) and in fission yeast (gene suc1) a single isoform is known, while mammals have two highly related isoforms. The regulatory subunits exist as hexamers, formed by the symmetrical assembly of 3 interlocked homodimers, creating an unusual 12-stranded beta-barrel structure []. Through the barrel centre runs a 12A diameter tunnel, lined by 6 exposed helix pairs []. Six kinase units can be modelled to bind the hexameric structure, which may thus act as a hub for cyclin-dependent protein kinase multimerisation [, ].; GO: 0016538 cyclin-dependent protein kinase regulator activity, 0007049 cell cycle; PDB: 1CKS_C 3QY2_B 1QB3_C 1SCE_B 1PUC_A 1DKS_B 2AST_C 1BUH_B 1DKT_B 2ASS_C.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	202
1dks_A	79	Ckshs1: Human Cyclin Dependent Kinase Subunit, Type		7e-22
2ass_C	69	Crystal Structure Of The Skp1-Skp2-Cks1 Complex Len		6e-21
1cks_A	79	Human Ckshs2 Atomic Structure: A Role For Its Hexam		1e-20
1qb3_A	150	Crystal Structure Of The Cell Cycle Regulatory Prot		4e-12
3qy2_A	117	Crystal Structure Of The P93a Monomer Mutant Of S.		1e-11
1sce_A	112	Crystal Structure Of The Cell Cycle Regulatory Prot		9e-11
1puc_A	105	P13suc1 In A Strand-Exchanged Dimer Length = 105		1e-10

>pdb|1DKS|A Chain A, Ckshs1: Human Cyclin Dependent Kinase Subunit, Type 1 In Complex With Phosphate Length = 79

Iteration: 1
 Score =  100 bits (248), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 52/62 (83%)
Query: 81  MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
           MS   I YSDKY+D+ + YRHVMLP D+AK VPKTHLM+E+EWRNLGVQQS GW+HYM+H
Sbjct: 1   MSHKQIYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIH 60
Query: 141 LP 142
            P
Sbjct: 61  EP 62

>pdb|2ASS|C Chain C, Crystal Structure Of The Skp1-Skp2-Cks1 Complex Length = 69

Iteration: 1
 Score = 97.1 bits (240), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 42/57 (73%), Positives = 50/57 (87%)
Query: 86  IRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLHLP 142
           I YSDKY+D+ + YRHVMLP D+AK VPKTHLM+E+EWRNLGVQQS GW+HYM+H P
Sbjct: 2   IYYSDKYDDEEFEYRHVMLPKDIAKLVPKTHLMSESEWRNLGVQQSQGWVHYMIHEP 58

>pdb|1CKS|A Chain A, Human Ckshs2 Atomic Structure: A Role For Its Hexameric Assembly In Cell Cycle Control Length = 79

Iteration: 1
 Score = 95.9 bits (237), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 51/62 (82%)
Query: 81  MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
           M+   I YSDKY D++Y YRHVMLP +L+KQVPKTHLM+E EWR LGVQQS GW+HYM+H
Sbjct: 1   MAHKQIYYSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIH 60
Query: 141 LP 142
            P
Sbjct: 61  EP 62

>pdb|1QB3|A Chain A, Crystal Structure Of The Cell Cycle Regulatory Protein Cks1 Length = 150

Iteration: 1
 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 40/68 (58%), Gaps = 9/68 (13%)
Query: 84  DDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTH---------LMTETEWRNLGVQQSPGW 134
           D I YS +Y DDNY YRHVMLP  + K +P  +         ++TE EWR LG+ QS GW
Sbjct: 26  DSIHYSPRYSDDNYEYRHVMLPKAMLKVIPSDYFNSEVGTLRILTEDEWRGLGITQSLGW 85
Query: 135 IHYMLHLP 142
            HY  H P
Sbjct: 86  EHYECHAP 93

>pdb|3QY2|A Chain A, Crystal Structure Of The P93a Monomer Mutant Of S. Cerevisiae Cks1 Length = 117

Iteration: 1
 Score = 65.9 bits (159), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/66 (48%), Positives = 39/66 (59%), Gaps = 9/66 (13%)
Query: 84  DDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTH---------LMTETEWRNLGVQQSPGW 134
           D I YS +Y DDNY YRHVMLP  + K +P  +         ++TE EWR LG+ QS GW
Sbjct: 26  DSIHYSPRYSDDNYEYRHVMLPKAMLKVIPSDYFNSEVGTLRILTEDEWRGLGITQSLGW 85
Query: 135 IHYMLH 140
            HY  H
Sbjct: 86  EHYECH 91

>pdb|1SCE|A Chain A, Crystal Structure Of The Cell Cycle Regulatory Protein Suc1 Reveals A Novel Beta-Hinge Conformational Switch Length = 112

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 36/101 (35%), Positives = 53/101 (52%), Gaps = 20/101 (19%)
Query: 84  DDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTH---------LMTETEWRNLGVQQSPGW 134
           D I YS +Y DD Y YRHVMLP  + K +P  +         ++ E EWR LG+ QS GW
Sbjct: 23  DQIHYSPRYADDEYEYRHVMLPKAMLKAIPTDYFNPETGTLRILQEEEWRGLGITQSLGW 82
Query: 135 IHYMLHLPGNENWVKNRYETLVRLRGKRDFSVLSQQDKQGG 175
             Y +H+P            ++  + ++D+ + SQQ  +GG
Sbjct: 83  EMYEVHVPEPH---------ILLFKREKDYQMKSQQ--RGG 112

>pdb|1PUC|A Chain A, P13suc1 In A Strand-Exchanged Dimer Length = 105

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 39/68 (57%), Gaps = 9/68 (13%)
Query: 84  DDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTH---------LMTETEWRNLGVQQSPGW 134
           D I YS +Y DD Y YRHVMLP  + K +P  +         ++ E EWR LG+ QS GW
Sbjct: 22  DQIHYSPRYADDEYEYRHVMLPKAMLKAIPTDYFNPETGTLRILQEEEWRGLGITQSLGW 81
Query: 135 IHYMLHLP 142
             Y +H+P
Sbjct: 82  EMYEVHVP 89

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	202
1cks_A	79	Cyclin-dependent kinase subunit, type 2; cell divi	4e-35
3qy2_A	117	Cyclin-dependent kinases regulatory subunit; prote	3e-29
1puc_A	105	P13SUC1, P13; cell cycle, domain swapping, strand-	6e-29
1qb3_A	150	Cyclin-dependent kinases regulatory subunit; cell	4e-28

>1cks_A Cyclin-dependent kinase subunit, type 2; cell division; 2.10A {Homo sapiens} SCOP: d.97.1.1 PDB: 1buh_B 1dks_A 1dkt_A* 2ast_C* 2ass_C* Length = 79

 Score =  117 bits (296), Expect = 4e-35
 Identities = 43/62 (69%), Positives = 51/62 (82%)

Query: 81  MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLH 140
           M+   I YSDKY D++Y YRHVMLP +L+KQVPKTHLM+E EWR LGVQQS GW+HYM+H
Sbjct: 1   MAHKQIYYSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIH 60

Query: 141 LP 142
            P
Sbjct: 61  EP 62

>3qy2_A Cyclin-dependent kinases regulatory subunit; protein kinase activator, ubiquitin binding, transcription, cell cycle, transferase RE; HET: FLC; 2.59A {Saccharomyces cerevisiae} Length = 117

 Score =  103 bits (259), Expect = 3e-29
 Identities = 32/81 (39%), Positives = 41/81 (50%), Gaps = 9/81 (11%)

Query: 71  VSSFSGKTTTMSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTH---------LMTET 121
           ++           D I YS +Y DDNY YRHVMLP  + K +P  +         ++TE 
Sbjct: 13  LTDQERARVLEFQDSIHYSPRYSDDNYEYRHVMLPKAMLKVIPSDYFNSEVGTLRILTED 72

Query: 122 EWRNLGVQQSPGWIHYMLHLP 142
           EWR LG+ QS GW HY  H  
Sbjct: 73  EWRGLGITQSLGWEHYECHAA 93

>1puc_A P13SUC1, P13; cell cycle, domain swapping, strand-exchanged dimer, binding protein; HET: CPS; 1.95A {Schizosaccharomyces pombe} SCOP: d.97.1.1 PDB: 1sce_A Length = 105

 Score =  103 bits (257), Expect = 6e-29
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 9/69 (13%)

Query: 83  ADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTH---------LMTETEWRNLGVQQSPG 133
            D I YS +Y DD Y YRHVMLP  + K +P  +         ++ E EWR LG+ QS G
Sbjct: 21  IDQIHYSPRYADDEYEYRHVMLPKAMLKAIPTDYFNPETGTLRILQEEEWRGLGITQSLG 80

Query: 134 WIHYMLHLP 142
           W  Y +H+P
Sbjct: 81  WEMYEVHVP 89

>1qb3_A Cyclin-dependent kinases regulatory subunit; cell cycle mutagenesis domain swapping, cyclin-dependent KIN cycle; 3.00A {Saccharomyces cerevisiae} SCOP: d.97.1.1 Length = 150

 Score =  102 bits (255), Expect = 4e-28
 Identities = 33/81 (40%), Positives = 42/81 (51%), Gaps = 9/81 (11%)

Query: 71  VSSFSGKTTTMSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTH---------LMTET 121
           ++           D I YS +Y DDNY YRHVMLP  + K +P  +         ++TE 
Sbjct: 13  LTDQERARVLEFQDSIHYSPRYSDDNYEYRHVMLPKAMLKVIPSDYFNSEVGTLRILTED 72

Query: 122 EWRNLGVQQSPGWIHYMLHLP 142
           EWR LG+ QS GW HY  H P
Sbjct: 73  EWRGLGITQSLGWEHYECHAP 93

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	202
1cks_A	79	Cyclin-dependent kinase subunit, type 2; cell divi	100.0
3qy2_A	117	Cyclin-dependent kinases regulatory subunit; prote	100.0
1puc_A	105	P13SUC1, P13; cell cycle, domain swapping, strand-	100.0
1qb3_A	150	Cyclin-dependent kinases regulatory subunit; cell	100.0
1cks_A	79	Cyclin-dependent kinase subunit, type 2; cell divi	88.44
1qb3_A	150	Cyclin-dependent kinases regulatory subunit; cell	80.32

>1cks_A Cyclin-dependent kinase subunit, type 2; cell division; 2.10A {Homo sapiens} SCOP: d.97.1.1 PDB: 1buh_B 1dks_A 1dkt_A* 2ast_C* 2ass_C*

Probab=100.00  E-value=1.1e-47  Score=285.86  Aligned_cols=77  Identities=57%  Similarity=0.940  Sum_probs=72.9

Q ss_pred             CCCCCeeecCCcCCCceeEEEEEcChHHHhhCCCCCCCCHHHHhhhccccCCCeeEeeecCCCceeEEEeccccccc
Q psy4005          81 MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLHLPGNENWVKNRYETLVR  157 (202)
Q Consensus        81 M~~~~I~YS~KY~DD~YEYRHViLPkel~K~VPK~rLLsE~EWR~LGIQQS~GW~HYmiHkPEPHILLFRRPl~~~~  157 (202)
                      |+.++|+||+||+||+|||||||||++++|+||+++||||+|||+||||||+||+|||+|+|||||||||||++.++
T Consensus         1 m~~~~I~YS~kY~Dd~yeYRhViLpke~~k~vpk~~LlsE~EWR~LGIqqS~GW~Hy~ih~pEphiLlFRRp~~~~~   77 (79)
T 1cks_A            1 MAHKQIYYSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIHEPEPHILLFRRPLPKDQ   77 (79)
T ss_dssp             -CCCCCEECCCEECSSCEECCEECCHHHHHTSCSSSCCCHHHHHHHTCCCCTTCCCCBCCCCCCCCCCCCCCCCC--
T ss_pred             CCCCCcEECCCccCCCeEEEEEEcCHHHHHhCCcccccCHHHHHHhCcccCCCeEEEEecCCCCeEEEEeccCCCCC
Confidence            77899999999999999999999999999999999999999999999999999999999999999999999998754

>3qy2_A Cyclin-dependent kinases regulatory subunit; protein kinase activator, ubiquitin binding, transcription, cell cycle, transferase RE; HET: FLC; 2.59A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.7e-44  Score=281.73  Aligned_cols=82  Identities=40%  Similarity=0.684  Sum_probs=74.6

Q ss_pred             ccccccCCCCCeeecCCcCCCceeEEEEEcChHHHhhCCCC---------CCCCHHHHhhhccccCCCeeEeeecCCCce
Q psy4005          75 SGKTTTMSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKT---------HLMTETEWRNLGVQQSPGWIHYMLHLPGNE  145 (202)
Q Consensus        75 ~~k~t~M~~~~I~YS~KY~DD~YEYRHViLPkel~K~VPK~---------rLLsE~EWR~LGIQQS~GW~HYmiHkPEPH  145 (202)
                      ..+......++|+||+||+||+||||||||||+++|++|++         +||||+|||+||||||+||+|||+|+||||
T Consensus        17 ~r~~~~~~~~~I~YS~KY~Dd~yEYRHViLPke~~k~iPk~~~~~~~g~~rLLsE~EWR~LGIqqS~GW~HY~ih~pEPh   96 (117)
T 3qy2_A           17 ERARVLEFQDSIHYSPRYSDDNYEYRHVMLPKAMLKVIPSDYFNSEVGTLRILTEDEWRGLGITQSLGWEHYECHAAEPH   96 (117)
T ss_dssp             HHHHHHTTGGGCEECCCEECSSEEEEEEECCGGGGGGSCGGGBCTTTSSBCCCCHHHHHHTTCCCCSSCEEECCTTSCTT
T ss_pred             HHHHHHhhhccceecCCccCCCeEEEEEEcCHHHHHhCchhhcccccccceecCHHHHHHhccccCCCcEEeeecCCCCe
Confidence            34444556789999999999999999999999999999987         899999999999999999999999999999


Q ss_pred             eEEEecccccc
Q psy4005         146 NWVKNRYETLV  156 (202)
Q Consensus       146 ILLFRRPl~~~  156 (202)
                      |||||||++..
T Consensus        97 ILLFRRp~~~~  107 (117)
T 3qy2_A           97 ILLFKRPLNYE  107 (117)
T ss_dssp             EEEEEEECC--
T ss_pred             EEEEecCCCCC
Confidence            99999999876

>1puc_A P13SUC1, P13; cell cycle, domain swapping, strand-exchanged dimer, binding protein; HET: CPS; 1.95A {Schizosaccharomyces pombe} SCOP: d.97.1.1 PDB: 1sce_A

Probab=100.00  E-value=1.6e-44  Score=280.57  Aligned_cols=77  Identities=40%  Similarity=0.757  Sum_probs=71.6

Q ss_pred             CCCCCeeecCCcCCCceeEEEEEcChHHHhhCCCC---------CCCCHHHHhhhccccCCCeeEeeecCCCceeEEEec
Q psy4005          81 MSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKT---------HLMTETEWRNLGVQQSPGWIHYMLHLPGNENWVKNR  151 (202)
Q Consensus        81 M~~~~I~YS~KY~DD~YEYRHViLPkel~K~VPK~---------rLLsE~EWR~LGIQQS~GW~HYmiHkPEPHILLFRR  151 (202)
                      +..++|+||+||+||+|||||||||++++|.+|++         +||||+|||+||||||+||+|||+|+||||||||||
T Consensus        19 ~~~~~I~YS~kY~Dd~yEYRHViLPke~~k~ipk~~~~~~~gt~rLLtE~EWR~LGIqqS~GW~Hy~ih~pEPhiLLFRR   98 (105)
T 1puc_A           19 PFIDQIHYSPRYADDEYEYRHVMLPKAMLKAIPTDYFNPETGTLRILQEEEWRGLGITQSLGWEMYEVHVPEPHILLFKR   98 (105)
T ss_dssp             HHHTTCEECCCEECSSCEECCEECCHHHHTTSCGGGBCTTTSSBCCCCHHHHHHTTCCCCSSCCCCCCCCCCTTCCCCCC
T ss_pred             hcccCceeCCcccCCCeEEEEEEcCHHHHHhCcccccccccccccccCHHHHHHhCcccCCCcEEEeecCCCCeEEEEec
Confidence            34689999999999999999999999999999998         999999999999999999999999999999999999


Q ss_pred             cccccc
Q psy4005         152 YETLVR  157 (202)
Q Consensus       152 Pl~~~~  157 (202)
                      |++..+
T Consensus        99 p~~~~~  104 (105)
T 1puc_A           99 EKDYQM  104 (105)
T ss_dssp             CCC---
T ss_pred             cCCCCC
Confidence            998753

>1qb3_A Cyclin-dependent kinases regulatory subunit; cell cycle mutagenesis domain swapping, cyclin-dependent KIN cycle; 3.00A {Saccharomyces cerevisiae} SCOP: d.97.1.1

Probab=100.00  E-value=3e-42  Score=280.98  Aligned_cols=79  Identities=43%  Similarity=0.733  Sum_probs=74.3

Q ss_pred             cCCCCCeeecCCcCCCceeEEEEEcChHHHhhCCCC---------CCCCHHHHhhhccccCCCeeEeeecCCCceeEEEe
Q psy4005          80 TMSADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKT---------HLMTETEWRNLGVQQSPGWIHYMLHLPGNENWVKN  150 (202)
Q Consensus        80 ~M~~~~I~YS~KY~DD~YEYRHViLPkel~K~VPK~---------rLLsE~EWR~LGIQQS~GW~HYmiHkPEPHILLFR  150 (202)
                      .+..++|+||+||+||+|||||||||++++|.+|++         |||||+|||+||||||+||+|||+|+|||||||||
T Consensus        22 ~~~~~~I~YS~KY~Dd~YEYRHViLPke~~k~iPk~y~~~~~gt~rLLtE~EWR~LGIqQS~GW~HYmih~PEPhILLFR  101 (150)
T 1qb3_A           22 LEFQDSIHYSPRYSDDNYEYRHVMLPKAMLKVIPSDYFNSEVGTLRILTEDEWRGLGITQSLGWEHYECHAPEPHILLFK  101 (150)
T ss_dssp             GGGGGGCEECCCEECSSEEEEEEECCHHHHHTSCGGGBCTTTSSBCCCCHHHHHHTTCCCCTTCEEESCCCCCTTEEEEE
T ss_pred             HHHhhcceeccceecCceeEEEEecCHHHHhhccccccccccccccCCCHHHHHHHccccCcCcEEeeecCCCCcEEEec
Confidence            334688999999999999999999999999999998         99999999999999999999999999999999999


Q ss_pred             cccccccC
Q psy4005         151 RYETLVRL  158 (202)
Q Consensus       151 RPl~~~~l  158 (202)
                      ||++.++.
T Consensus       102 Rpl~~~~~  109 (150)
T 1qb3_A          102 RPLNYEAE  109 (150)
T ss_dssp             EETTHHHH
T ss_pred             CCCCCCCC
Confidence            99988743

>1cks_A Cyclin-dependent kinase subunit, type 2; cell division; 2.10A {Homo sapiens} SCOP: d.97.1.1 PDB: 1buh_B 1dks_A 1dkt_A* 2ast_C* 2ass_C*

Probab=88.44  E-value=0.11  Score=38.63  Aligned_cols=15  Identities=60%  Similarity=1.046  Sum_probs=11.9

Q ss_pred             ecceEEeeeCCCCCC
Q psy4005          14 LEPHVLLFRRPKQPT   28 (202)
Q Consensus        14 ~~~~~~~~~~~~~~~   28 (202)
                      -|||+||||||..-.
T Consensus        62 pEphiLlFRRp~~~~   76 (79)
T 1cks_A           62 PEPHILLFRRPLPKD   76 (79)
T ss_dssp             CCCCCCCCCCCCCC-
T ss_pred             CCCeEEEEeccCCCC
Confidence            489999999997543

>1qb3_A Cyclin-dependent kinases regulatory subunit; cell cycle mutagenesis domain swapping, cyclin-dependent KIN cycle; 3.00A {Saccharomyces cerevisiae} SCOP: d.97.1.1

Probab=80.32  E-value=0.41  Score=39.28  Aligned_cols=13  Identities=62%  Similarity=1.193  Sum_probs=11.1

Q ss_pred             ecceEEeeeCCCC
Q psy4005          14 LEPHVLLFRRPKQ   26 (202)
Q Consensus        14 ~~~~~~~~~~~~~   26 (202)
                      -|||+||||||+.
T Consensus        93 PEPhILLFRRpl~  105 (150)
T 1qb3_A           93 PEPHILLFKRPLN  105 (150)
T ss_dssp             CCTTEEEEEEETT
T ss_pred             CCCcEEEecCCCC
Confidence            3999999999963

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	202
d1cksa_	74	d.97.1.1 (A:) CksHs2 {Human (Homo sapiens) [TaxId:	3e-33
d1puca_	101	d.97.1.1 (A:) suc1 {Fission yeast (Schizosaccharom	8e-31
d1qb3a_	113	d.97.1.1 (A:) cks1 {Baker's yeast (Saccharomyces c	1e-30

>d1cksa_ d.97.1.1 (A:) CksHs2 {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: Alpha and beta proteins (a+b)
fold: Cell cycle regulatory proteins
superfamily: Cell cycle regulatory proteins
family: Cell cycle regulatory proteins
domain: CksHs2
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (280), Expect = 3e-33
 Identities = 42/61 (68%), Positives = 50/61 (81%)

Query: 82  SADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLHL 141
           +   I YSDKY D++Y YRHVMLP +L+KQVPKTHLM+E EWR LGVQQS GW+HYM+H 
Sbjct: 1   AHKQIYYSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIHE 60

Query: 142 P 142
           P
Sbjct: 61  P 61

>d1puca_ d.97.1.1 (A:) suc1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 101

class: Alpha and beta proteins (a+b)
fold: Cell cycle regulatory proteins
superfamily: Cell cycle regulatory proteins
family: Cell cycle regulatory proteins
domain: suc1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score =  106 bits (267), Expect = 8e-31
 Identities = 30/69 (43%), Positives = 39/69 (56%), Gaps = 9/69 (13%)

Query: 83  ADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTH---------LMTETEWRNLGVQQSPG 133
            D I YS +Y DD Y YRHVMLP  + K +P  +         ++ E EWR LG+ QS G
Sbjct: 21  IDQIHYSPRYADDEYEYRHVMLPKAMLKAIPTDYFNPETGTLRILQEEEWRGLGITQSLG 80

Query: 134 WIHYMLHLP 142
           W  Y +H+P
Sbjct: 81  WEMYEVHVP 89

>d1qb3a_ d.97.1.1 (A:) cks1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: Cell cycle regulatory proteins
superfamily: Cell cycle regulatory proteins
family: Cell cycle regulatory proteins
domain: cks1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  106 bits (266), Expect = 1e-30
 Identities = 33/69 (47%), Positives = 40/69 (57%), Gaps = 9/69 (13%)

Query: 83  ADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTH---------LMTETEWRNLGVQQSPG 133
            D I YS +Y DDNY YRHVMLP  + K +P  +         ++TE EWR LG+ QS G
Sbjct: 20  QDSIHYSPRYSDDNYEYRHVMLPKAMLKVIPSDYFNSEVGTLRILTEDEWRGLGITQSLG 79

Query: 134 WIHYMLHLP 142
           W HY  H P
Sbjct: 80  WEHYECHAP 88

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	202
d1cksa_	74	CksHs2 {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1qb3a_	113	cks1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	100.0
d1puca_	101	suc1 {Fission yeast (Schizosaccharomyces pombe) [T	100.0
d1cksa_	74	CksHs2 {Human (Homo sapiens) [TaxId: 9606]}	83.29

>d1cksa_ d.97.1.1 (A:) CksHs2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cell cycle regulatory proteins
superfamily: Cell cycle regulatory proteins
family: Cell cycle regulatory proteins
domain: CksHs2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.4e-46  Score=275.70  Aligned_cols=72  Identities=60%  Similarity=0.997  Sum_probs=70.6

Q ss_pred             CCCeeecCCcCCCceeEEEEEcChHHHhhCCCCCCCCHHHHhhhccccCCCeeEeeecCCCceeEEEecccc
Q psy4005          83 ADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKTHLMTETEWRNLGVQQSPGWIHYMLHLPGNENWVKNRYET  154 (202)
Q Consensus        83 ~~~I~YS~KY~DD~YEYRHViLPkel~K~VPK~rLLsE~EWR~LGIQQS~GW~HYmiHkPEPHILLFRRPl~  154 (202)
                      .++|+||+||+||+|||||||||++++|++|+++||||+|||+||||||+||+|||+|+|||||||||||++
T Consensus         2 ~~~I~YS~kY~Dd~yeYRhViLpk~~~k~~pk~~LlsE~EWR~LGIqqS~GW~Hym~h~pEphiLlfRRpl~   73 (74)
T d1cksa_           2 HKQIYYSDKYFDEHYEYRHVMLPRELSKQVPKTHLMSEEEWRRLGVQQSLGWVHYMIHEPEPHILLFRRPLP   73 (74)
T ss_dssp             CCCCEECCCEECSSCEECCEECCHHHHHTSCSSSCCCHHHHHHHTCCCCTTCCCCBCCCCCCCCCCCCCCCC
T ss_pred             CcceEeCCcccCCccEEEEEEeCHHHHhhCCCccccCHHHHHHhCcccCCCcEEeeeeCCCceEEEEeccCC
Confidence            579999999999999999999999999999999999999999999999999999999999999999999986

>d1qb3a_ d.97.1.1 (A:) cks1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cell cycle regulatory proteins
superfamily: Cell cycle regulatory proteins
family: Cell cycle regulatory proteins
domain: cks1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-43  Score=275.59  Aligned_cols=77  Identities=44%  Similarity=0.766  Sum_probs=72.7

Q ss_pred             CCCCeeecCCcCCCceeEEEEEcChHHHhhCCCC---------CCCCHHHHhhhccccCCCeeEeeecCCCceeEEEecc
Q psy4005          82 SADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKT---------HLMTETEWRNLGVQQSPGWIHYMLHLPGNENWVKNRY  152 (202)
Q Consensus        82 ~~~~I~YS~KY~DD~YEYRHViLPkel~K~VPK~---------rLLsE~EWR~LGIQQS~GW~HYmiHkPEPHILLFRRP  152 (202)
                      ..++|+||+||+||+|||||||||++++|++|++         +||||+|||+||||||+||+|||+|+|||||||||||
T Consensus        19 f~~~I~YS~kY~DD~yeYRhViLpk~~~k~ipk~~~~~~~g~~rLLtE~EWR~LGIqqS~GW~Hymih~pEphiLLFRRp   98 (113)
T d1qb3a_          19 FQDSIHYSPRYSDDNYEYRHVMLPKAMLKVIPSDYFNSEVGTLRILTEDEWRGLGITQSLGWEHYECHAPEPHILLFKRP   98 (113)
T ss_dssp             GGGGCEECCCEECSSEEEEEEECCHHHHHTSCGGGBCTTTSSBCCCCHHHHHHTTCCCCTTCEEESCCCCCTTEEEEEEE
T ss_pred             hhhhceecccccCCCeeEEEEEeCHHHHHhcchhhccccccccccCCHHHHHHhCcccCCCcEeeeecCCCCeEEEEecC
Confidence            3588999999999999999999999999999975         5999999999999999999999999999999999999


Q ss_pred             cccccC
Q psy4005         153 ETLVRL  158 (202)
Q Consensus       153 l~~~~l  158 (202)
                      ++.+|-
T Consensus        99 l~~~~~  104 (113)
T d1qb3a_          99 LNYEAE  104 (113)
T ss_dssp             TTHHHH
T ss_pred             CCCCcC
Confidence            988653

>d1puca_ d.97.1.1 (A:) suc1 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: Cell cycle regulatory proteins
superfamily: Cell cycle regulatory proteins
family: Cell cycle regulatory proteins
domain: suc1
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=100.00  E-value=1.9e-43  Score=271.28  Aligned_cols=72  Identities=43%  Similarity=0.848  Sum_probs=69.5

Q ss_pred             CCCeeecCCcCCCceeEEEEEcChHHHhhCCCC---------CCCCHHHHhhhccccCCCeeEeeecCCCceeEEEeccc
Q psy4005          83 ADDIRYSDKYEDDNYIYRHVMLPPDLAKQVPKT---------HLMTETEWRNLGVQQSPGWIHYMLHLPGNENWVKNRYE  153 (202)
Q Consensus        83 ~~~I~YS~KY~DD~YEYRHViLPkel~K~VPK~---------rLLsE~EWR~LGIQQS~GW~HYmiHkPEPHILLFRRPl  153 (202)
                      .++|+||+||+||+|||||||||++++|++|++         +||||+|||+||||||+||+|||+|+|||||||||||+
T Consensus        21 ~~~I~YS~kY~DD~yeYRhViLpk~~~k~ipk~~~~~~~g~~rLLtE~EWR~LGIqqS~GW~Hymih~pEPhiLLFRRp~  100 (101)
T d1puca_          21 IDQIHYSPRYADDEYEYRHVMLPKAMLKAIPTDYFNPETGTLRILQEEEWRGLGITQSLGWEMYEVHVPEPHILLFKREK  100 (101)
T ss_dssp             HTTCEECCCEECSSCEECCEECCHHHHTTSCGGGBCTTTSSBCCCCHHHHHHTTCCCCSSCCCCCCCCCCTTCCCCCCCC
T ss_pred             HhhccccccccCCCeEEEEEEeCHHHHHhcchhhccccccccccCCHHHHHHhccccCCCcEeeeeeCCCceEEEEecCC
Confidence            589999999999999999999999999999985         69999999999999999999999999999999999998


Q ss_pred             c
Q psy4005         154 T  154 (202)
Q Consensus       154 ~  154 (202)
                      +
T Consensus       101 ~  101 (101)
T d1puca_         101 D  101 (101)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1cksa_ d.97.1.1 (A:) CksHs2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cell cycle regulatory proteins
superfamily: Cell cycle regulatory proteins
family: Cell cycle regulatory proteins
domain: CksHs2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.29  E-value=0.11  Score=36.53  Aligned_cols=13  Identities=69%  Similarity=1.157  Sum_probs=11.2

Q ss_pred             eecceEEeeeCCC
Q psy4005          13 YLEPHVLLFRRPK   25 (202)
Q Consensus        13 ~~~~~~~~~~~~~   25 (202)
                      --|||+||||||-
T Consensus        60 ~pEphiLlfRRpl   72 (74)
T d1cksa_          60 EPEPHILLFRRPL   72 (74)
T ss_dssp             CCCCCCCCCCCCC
T ss_pred             CCCceEEEEeccC
Confidence            4589999999985