Psyllid ID: psy4021

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-----
Protein Sequence
MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVVVNESVYFPNLIVTKIFW
Secondary Structure (PSIPRED)
ccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccccccHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcccEccccEEEEEEcc
Coil and Loop (DISEMBL)
MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVVVNesvyfpnlivtkifw
Flexible Loop (DISEMBL)
mdikvlqfqnkkLAQRLEQKNRAEAELRSRIEqlekrqtqddavlnvvvnesvyfpnlivtkifw
Low Complexity Region (SEG)
MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVVVNESVYFPNLIVTKIFW
Disordered region (IsUnstruct)
******************************************AVLNVVVNESVYFPNLIVTKIFW
Disordered Region (DISOPRED)
*DIKVLQFQNKKLAQRLE********************TQDDAVLNVVVNESVYFPNLIVTKIFW
Disordered Region (DISEMBL)
MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVVVNESVYFPNLIVTKIFW
Disordered Region (DISPRO)
MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVVVNESVYFPNLIVTKIFW
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQTQDDAVLNVVVNESVYFPNLIVTKIFW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	65	2.2.26 [Sep-21-2011]
Q9VRP9	1044	E3 ubiquitin-protein liga	yes	N/A	0.738	0.045	0.875	1e-16
O75150	1001	E3 ubiquitin-protein liga	no	N/A	0.738	0.047	0.687	4e-11
Q5RAU7	1001	E3 ubiquitin-protein liga	yes	N/A	0.738	0.047	0.687	4e-11
Q3U319	1001	E3 ubiquitin-protein liga	yes	N/A	0.738	0.047	0.687	1e-10
Q8CJB9	1002	E3 ubiquitin-protein liga	yes	N/A	0.738	0.047	0.687	1e-10
Q4R7K7	1001	E3 ubiquitin-protein liga	N/A	N/A	0.738	0.047	0.666	2e-10
A2VDP1	975	E3 ubiquitin-protein liga	no	N/A	0.738	0.049	0.520	8e-06
Q5DTM8	973	E3 ubiquitin-protein liga	no	N/A	0.738	0.049	0.520	8e-06
Q5VTR2	975	E3 ubiquitin-protein liga	no	N/A	0.738	0.049	0.520	8e-06
Q5ZLS3	984	E3 ubiquitin-protein liga	yes	N/A	0.738	0.048	0.5	9e-06

>sp|Q9VRP9|BRE1_DROME E3 ubiquitin-protein ligase Bre1 OS=Drosophila melanogaster GN=Bre1 PE=1 SV=2

 Score = 84.7 bits (208), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 42/48 (87%), Positives = 45/48 (93%)

Query: 1  MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVV 48
          MDIKVL+FQNKKLAQR+EQ+ R EAELR RIEQLEKRQTQDDAVLNVV
Sbjct: 45 MDIKVLEFQNKKLAQRIEQRMRTEAELRHRIEQLEKRQTQDDAVLNVV 92

E3 ubiquitin-protein ligase that mediates monoubiquitination of 'Lys-117' of histone H2B. H2B 'Lys-117' ubiquitination gives a specific tag for epigenetic transcriptional activation and is also prerequisite for histone H3 'Lys-4' and 'Lys-79' methylation. It thereby plays a central role in histone code and gene regulation. Required for the expression of Notch target genes in development by affecting the levels of Su(H) in imaginal disk cells and stimulating the Su(H)-mediated transcription of Notch-specific genes.
Drosophila melanogaster (taxid: 7227)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|O75150|BRE1B_HUMAN E3 ubiquitin-protein ligase BRE1B OS=Homo sapiens GN=RNF40 PE=1 SV=4

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/48 (68%), Positives = 39/48 (81%)

Query: 1  MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVV 48
          MD+KVLQF+NKKLA+RLEQ+   E ELR RIE+LEKRQ  DDA L +V
Sbjct: 47 MDLKVLQFKNKKLAERLEQRQACEDELRERIEKLEKRQATDDATLLIV 94

Component of the RNF20/40 E3 ubiquitin-protein ligase complex that mediates monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1). H2BK120ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for histone H3 'Lys-4' and 'Lys-79' methylation (H3K4me and H3K79me, respectively). It thereby plays a central role in histone code and gene regulation. The RNF20/40 complex forms a H2B ubiquitin ligase complex in cooperation with the E2 enzyme UBE2A or UBE2B; reports about the cooperation with UBE2E1/UBCH are contradictory. Required for transcriptional activation of Hox genes.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5RAU7|BRE1B_PONAB E3 ubiquitin-protein ligase BRE1B OS=Pongo abelii GN=RNF40 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 33/48 (68%), Positives = 39/48 (81%)

Query: 1  MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVV 48
          MD+KVLQF+NKKLA+RLEQ+   E ELR RIE+LEKRQ  DDA L +V
Sbjct: 47 MDLKVLQFKNKKLAERLEQRQACEDELRERIEKLEKRQATDDATLLIV 94

Component of the RNF20/40 E3 ubiquitin-protein ligase complex that mediates monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1). H2BK120ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for histone H3 'Lys-4' and 'Lys-79' methylation (H3K4me and H3K79me, respectively). It thereby plays a central role in histone code and gene regulation. The RNF20/40 complex forms a H2B ubiquitin ligase complex in cooperation with the E2 enzyme UBE2A or UBE2B; reports about the cooperation with UBE2E1/UBCH are contradictory. Required for transcriptional activation of Hox genes.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q3U319|BRE1B_MOUSE E3 ubiquitin-protein ligase BRE1B OS=Mus musculus GN=Rnf40 PE=2 SV=2

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/48 (68%), Positives = 38/48 (79%)

Query: 1  MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVV 48
          MD KVLQF+NKKLA+RLEQ+   E ELR RIE+LEKRQ  DDA L +V
Sbjct: 47 MDSKVLQFKNKKLAERLEQRQACEDELRERIEKLEKRQATDDATLLIV 94

Component of the RNF20/40 E3 ubiquitin-protein ligase complex that mediates monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1). H2BK120ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for histone H3 'Lys-4' and 'Lys-79' methylation (H3K4me and H3K79me, respectively). It thereby plays a central role in histone code and gene regulation. The RNF20/40 complex forms a H2B ubiquitin ligase complex in cooperation with the E2 enzyme UBE2A or UBE2B; reports about the cooperation with UBE2E1/UBCH are contradictory. Required for transcriptional activation of Hox genes.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8CJB9|BRE1B_RAT E3 ubiquitin-protein ligase BRE1B OS=Rattus norvegicus GN=Rnf40 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/48 (68%), Positives = 38/48 (79%)

Query: 1  MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVV 48
          MD KVLQF+NKKLA+RLEQ+   E ELR RIE+LEKRQ  DDA L +V
Sbjct: 47 MDSKVLQFKNKKLAERLEQRQACEDELRERIEKLEKRQATDDATLLIV 94

Component of the RNF20/40 E3 ubiquitin-protein ligase complex that mediates monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1). H2BK120ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for histone H3 'Lys-4' and 'Lys-79' methylation (H3K4me and H3K79me, respectively). It thereby plays a central role in histone code and gene regulation. The RNF20/40 complex forms a H2B ubiquitin ligase complex in cooperation with the E2 enzyme UBE2A or UBE2B; reports about the cooperation with UBE2E1/UBCH are contradictory. Required for transcriptional activation of Hox genes.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q4R7K7|BRE1B_MACFA E3 ubiquitin-protein ligase BRE1B OS=Macaca fascicularis GN=RNF40 PE=2 SV=1

 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/48 (66%), Positives = 39/48 (81%)

Query: 1  MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVV 48
          +D+KVLQF+NKKLA+RLEQ+   E ELR RIE+LEKRQ  DDA L +V
Sbjct: 47 IDLKVLQFKNKKLAERLEQRQACEDELRERIEKLEKRQATDDATLLIV 94

Component of the RNF20/40 E3 ubiquitin-protein ligase complex that mediates monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1). H2BK120ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for histone H3 'Lys-4' and 'Lys-79' methylation (H3K4me and H3K79me, respectively). It thereby plays a central role in histone code and gene regulation. The RNF20/40 complex forms a H2B ubiquitin ligase complex in cooperation with the E2 enzyme UBE2A or UBE2B; reports about the cooperation with UBE2E1/UBCH are contradictory. Required for transcriptional activation of Hox genes.

Macaca fascicularis (taxid: 9541)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|A2VDP1|BRE1A_BOVIN E3 ubiquitin-protein ligase BRE1A OS=Bos taurus GN=RNF20 PE=2 SV=1

 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 35/48 (72%)

Query: 1  MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVV 48
          +DI+ LQ +N+KLA+ L+Q+   E ELR  IE+LE+RQ  DDA L +V
Sbjct: 46 LDIRTLQTKNRKLAEMLDQRQAIEDELREHIEKLERRQATDDASLLIV 93

Component of the RNF20/40 E3 ubiquitin-protein ligase complex that mediates monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1). H2BK120ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for histone H3 'Lys-4' and 'Lys-79' methylation (H3K4me and H3K79me, respectively). It thereby plays a central role in histone code and gene regulation. The RNF20/40 complex forms a H2B ubiquitin ligase complex in cooperation with the E2 enzyme UBE2A or UBE2B; reports about the cooperation with UBE2E1/UBCH are contradictory. Required for transcriptional activation of Hox genes. Recruited to the MDM2 promoter, probably by being recruited by p53/TP53, and thereby acts as a transcriptional coactivator.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5DTM8|BRE1A_MOUSE E3 ubiquitin-protein ligase BRE1A OS=Mus musculus GN=Rnf20 PE=1 SV=2

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 35/48 (72%)

Query: 1  MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVV 48
          +DI+ LQ +N+KLA+ L+Q+   E ELR  IE+LE+RQ  DDA L +V
Sbjct: 46 LDIRTLQSKNRKLAEMLDQRQAIEDELREHIEKLERRQATDDASLLIV 93

Component of the RNF20/40 E3 ubiquitin-protein ligase complex that mediates monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1). H2BK120ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for histone H3 'Lys-4' and 'Lys-79' methylation (H3K4me and H3K79me, respectively). It thereby plays a central role in histone code and gene regulation. The RNF20/40 complex forms a H2B ubiquitin ligase complex in cooperation with the E2 enzyme UBE2A or UBE2B; reports about the cooperation with UBE2E1/UBCH are contradictory. Required for transcriptional activation of Hox genes. Recruited to the MDM2 promoter, probably by being recruited by p53/TP53, and thereby acts as a transcriptional coactivator.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5VTR2|BRE1A_HUMAN E3 ubiquitin-protein ligase BRE1A OS=Homo sapiens GN=RNF20 PE=1 SV=2

 Score = 48.9 bits (115), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 35/48 (72%)

Query: 1  MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVV 48
          +DI+ LQ +N+KLA+ L+Q+   E ELR  IE+LE+RQ  DDA L +V
Sbjct: 46 LDIRTLQTKNRKLAEMLDQRQAIEDELREHIEKLERRQATDDASLLIV 93

Component of the RNF20/40 E3 ubiquitin-protein ligase complex that mediates monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1). H2BK120ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for histone H3 'Lys-4' and 'Lys-79' methylation (H3K4me and H3K79me, respectively). It thereby plays a central role in histone code and gene regulation. The RNF20/40 complex forms a H2B ubiquitin ligase complex in cooperation with the E2 enzyme UBE2A or UBE2B; reports about the cooperation with UBE2E1/UBCH are contradictory. Required for transcriptional activation of Hox genes. Recruited to the MDM2 promoter, probably by being recruited by p53/TP53, and thereby acts as a transcriptional coactivator.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5ZLS3|BRE1A_CHICK E3 ubiquitin-protein ligase BRE1A OS=Gallus gallus GN=RNF20 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 35/48 (72%)

Query: 1  MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVV 48
          +DI+ LQ +N+KLA+ L+Q+   E ELR  IE+LE+RQ  DDA L ++
Sbjct: 46 LDIRTLQTKNRKLAEMLDQRQAIEDELREHIEKLERRQATDDASLLII 93

Component of the RNF20/40 E3 ubiquitin-protein ligase complex that mediates monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1). H2BK120ub1 gives a specific tag for epigenetic transcriptional activation and is also prerequisite for histone H3 'Lys-4' and 'Lys-79' methylation (H3K4me and H3K79me, respectively).

Gallus gallus (taxid: 9031)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	65
312381170	1073	hypothetical protein AND_06590 [Anophele	0.738	0.044	0.895	2e-15
170033165	1020	conserved hypothetical protein [Culex qu	0.738	0.047	0.895	4e-15
157109409	982	hypothetical protein AaeL_AAEL000730 [Ae	0.738	0.048	0.895	5e-15
195376855	1062	GJ13313 [Drosophila virilis] gi|19415436	0.738	0.045	0.875	5e-15
195337725	1044	GM13896 [Drosophila sechellia] gi|194128	0.738	0.045	0.875	5e-15
357624659	915	hypothetical protein KGM_09234 [Danaus p	0.738	0.052	0.875	5e-15
195552622	1044	GD17597 [Drosophila simulans] gi|1942021	0.738	0.045	0.875	5e-15
194750178	1080	GF10444 [Drosophila ananassae] gi|190624	0.738	0.044	0.875	6e-15
25012540	1044	RE34950p [Drosophila melanogaster]	0.738	0.045	0.875	6e-15
24658707	1044	Bre1 [Drosophila melanogaster] gi|749484	0.738	0.045	0.875	6e-15

>gi|312381170|gb|EFR26979.1| hypothetical protein AND_06590 [Anopheles darlingi]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/48 (89%), Positives = 46/48 (95%)

Query: 1  MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVV 48
          MDIKVLQFQNKKLAQR+EQ+ R E+ELRSRIEQLEKRQTQDDAVLNVV
Sbjct: 51 MDIKVLQFQNKKLAQRIEQRIRCESELRSRIEQLEKRQTQDDAVLNVV 98

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170033165|ref|XP_001844449.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167873728|gb|EDS37111.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score = 85.1 bits (209), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/48 (89%), Positives = 45/48 (93%)

Query: 1   MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVV 48
           MDIKVLQFQNKKLAQR+EQ+ R EAELR RIEQLEKRQTQDDAVLNVV
Sbjct: 80  MDIKVLQFQNKKLAQRIEQRVRCEAELRQRIEQLEKRQTQDDAVLNVV 127

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157109409|ref|XP_001650655.1| hypothetical protein AaeL_AAEL000730 [Aedes aegypti] gi|108883976|gb|EAT48201.1| AAEL000730-PA [Aedes aegypti]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 43/48 (89%), Positives = 45/48 (93%)

Query: 1  MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVV 48
          MDIKVLQFQNKKLAQR+EQ+ R EAELR RIEQLEKRQTQDDAVLNVV
Sbjct: 45 MDIKVLQFQNKKLAQRIEQRVRCEAELRQRIEQLEKRQTQDDAVLNVV 92

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195376855|ref|XP_002047208.1| GJ13313 [Drosophila virilis] gi|194154366|gb|EDW69550.1| GJ13313 [Drosophila virilis]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 42/48 (87%), Positives = 45/48 (93%)

Query: 1  MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVV 48
          MDIKVL+FQNKKLAQR+EQ+ R EAELR RIEQLEKRQTQDDAVLNVV
Sbjct: 49 MDIKVLEFQNKKLAQRIEQRMRCEAELRHRIEQLEKRQTQDDAVLNVV 96

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195337725|ref|XP_002035476.1| GM13896 [Drosophila sechellia] gi|194128569|gb|EDW50612.1| GM13896 [Drosophila sechellia]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 42/48 (87%), Positives = 45/48 (93%)

Query: 1  MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVV 48
          MDIKVL+FQNKKLAQR+EQ+ R EAELR RIEQLEKRQTQDDAVLNVV
Sbjct: 45 MDIKVLEFQNKKLAQRIEQRMRTEAELRHRIEQLEKRQTQDDAVLNVV 92

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357624659|gb|EHJ75355.1| hypothetical protein KGM_09234 [Danaus plexippus]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 42/48 (87%), Positives = 46/48 (95%)

Query: 1  MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVV 48
          MDIKVLQFQNKKLAQR+EQ++R EAELR+RIEQLEKRQTQDDAVL VV
Sbjct: 37 MDIKVLQFQNKKLAQRIEQRHRCEAELRARIEQLEKRQTQDDAVLCVV 84

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195552622|ref|XP_002076513.1| GD17597 [Drosophila simulans] gi|194202124|gb|EDX15700.1| GD17597 [Drosophila simulans]

 Score = 85.1 bits (209), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 42/48 (87%), Positives = 45/48 (93%)

Query: 1  MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVV 48
          MDIKVL+FQNKKLAQR+EQ+ R EAELR RIEQLEKRQTQDDAVLNVV
Sbjct: 45 MDIKVLEFQNKKLAQRIEQRMRTEAELRHRIEQLEKRQTQDDAVLNVV 92

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194750178|ref|XP_001957507.1| GF10444 [Drosophila ananassae] gi|190624789|gb|EDV40313.1| GF10444 [Drosophila ananassae]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 42/48 (87%), Positives = 45/48 (93%)

Query: 1   MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVV 48
           MDIKVL+FQNKKLAQR+EQ+ R EAELR RIEQLEKRQTQDDAVLNVV
Sbjct: 84  MDIKVLEFQNKKLAQRIEQRMRTEAELRHRIEQLEKRQTQDDAVLNVV 131

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|25012540|gb|AAN71372.1| RE34950p [Drosophila melanogaster]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 42/48 (87%), Positives = 45/48 (93%)

Query: 1  MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVV 48
          MDIKVL+FQNKKLAQR+EQ+ R EAELR RIEQLEKRQTQDDAVLNVV
Sbjct: 45 MDIKVLEFQNKKLAQRIEQRMRTEAELRHRIEQLEKRQTQDDAVLNVV 92

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24658707|ref|NP_647989.2| Bre1 [Drosophila melanogaster] gi|74948427|sp|Q9VRP9.2|BRE1_DROME RecName: Full=E3 ubiquitin-protein ligase Bre1; AltName: Full=dBre1 gi|23094129|gb|AAF50744.2| Bre1 [Drosophila melanogaster] gi|226958696|gb|ACO95725.1| FI09417p [Drosophila melanogaster]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 42/48 (87%), Positives = 45/48 (93%)

Query: 1  MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVV 48
          MDIKVL+FQNKKLAQR+EQ+ R EAELR RIEQLEKRQTQDDAVLNVV
Sbjct: 45 MDIKVLEFQNKKLAQRIEQRMRTEAELRHRIEQLEKRQTQDDAVLNVV 92

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	65
FB|FBgn0086694	1044	Bre1 "Bre1" [Drosophila melano	0.738	0.045	0.875	3.2e-15
UNIPROTKB|H3BQ99	111	RNF40 "E3 ubiquitin-protein li	0.753	0.441	0.68	3.1e-12
UNIPROTKB|H3BUL6	129	RNF40 "E3 ubiquitin-protein li	0.753	0.379	0.68	3.1e-12
UNIPROTKB|I3L332	144	RNF40 "E3 ubiquitin-protein li	0.753	0.340	0.68	3.1e-12
UNIPROTKB|H3BP71	961	RNF40 "E3 ubiquitin-protein li	0.753	0.050	0.68	6.8e-11
UNIPROTKB|F1RG77	1000	RNF40 "Uncharacterized protein	0.753	0.049	0.68	7.2e-11
UNIPROTKB|E1BCI2	1001	RNF40 "Uncharacterized protein	0.753	0.048	0.68	7.2e-11
UNIPROTKB|E2R1L5	1001	RNF40 "Uncharacterized protein	0.753	0.048	0.68	7.2e-11
UNIPROTKB|O75150	1001	RNF40 "E3 ubiquitin-protein li	0.753	0.048	0.68	7.2e-11
UNIPROTKB|Q5RAU7	1001	RNF40 "E3 ubiquitin-protein li	0.753	0.048	0.68	7.2e-11

FB|FBgn0086694 Bre1 "Bre1" [Drosophila melanogaster (taxid:7227)]

 Score = 205 (77.2 bits), Expect = 3.2e-15, P = 3.2e-15
 Identities = 42/48 (87%), Positives = 45/48 (93%)

Query:     1 MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVV 48
             MDIKVL+FQNKKLAQR+EQ+ R EAELR RIEQLEKRQTQDDAVLNVV
Sbjct:    45 MDIKVLEFQNKKLAQRIEQRMRTEAELRHRIEQLEKRQTQDDAVLNVV 92

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016570 "histone modification" evidence=IMP

GO:0007422 "peripheral nervous system development" evidence=NAS

GO:0006911 "phagocytosis, engulfment" evidence=IMP

UNIPROTKB|H3BQ99 RNF40 "E3 ubiquitin-protein ligase BRE1B" [Homo sapiens (taxid:9606)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 34/50 (68%), Positives = 41/50 (82%)

Query:     1 MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVVVN 50
             MD+KVLQF+NKKLA+RLEQ+   E ELR RIE+LEKRQ  DDA L ++VN
Sbjct:    47 MDLKVLQFKNKKLAERLEQRQACEDELRERIEKLEKRQATDDATL-LIVN 95

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0017075 "syntaxin-1 binding" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

UNIPROTKB|H3BUL6 RNF40 "E3 ubiquitin-protein ligase BRE1B" [Homo sapiens (taxid:9606)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 34/50 (68%), Positives = 41/50 (82%)

Query:     1 MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVVVN 50
             MD+KVLQF+NKKLA+RLEQ+   E ELR RIE+LEKRQ  DDA L ++VN
Sbjct:    47 MDLKVLQFKNKKLAERLEQRQACEDELRERIEKLEKRQATDDATL-LIVN 95

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0017075 "syntaxin-1 binding" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

UNIPROTKB|I3L332 RNF40 "E3 ubiquitin-protein ligase BRE1B" [Homo sapiens (taxid:9606)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 34/50 (68%), Positives = 41/50 (82%)

Query:     1 MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVVVN 50
             MD+KVLQF+NKKLA+RLEQ+   E ELR RIE+LEKRQ  DDA L ++VN
Sbjct:    47 MDLKVLQFKNKKLAERLEQRQACEDELRERIEKLEKRQATDDATL-LIVN 95

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0017075 "syntaxin-1 binding" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0043234 "protein complex" evidence=IEA

UNIPROTKB|H3BP71 RNF40 "E3 ubiquitin-protein ligase BRE1B" [Homo sapiens (taxid:9606)]

 Score = 164 (62.8 bits), Expect = 6.8e-11, P = 6.8e-11
 Identities = 34/50 (68%), Positives = 41/50 (82%)

Query:     1 MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVVVN 50
             MD+KVLQF+NKKLA+RLEQ+   E ELR RIE+LEKRQ  DDA L ++VN
Sbjct:    47 MDLKVLQFKNKKLAERLEQRQACEDELRERIEKLEKRQATDDATL-LIVN 95

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|F1RG77 RNF40 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 164 (62.8 bits), Expect = 7.2e-11, P = 7.2e-11
 Identities = 34/50 (68%), Positives = 41/50 (82%)

Query:     1 MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVVVN 50
             MD+KVLQF+NKKLA+RLEQ+   E ELR RIE+LEKRQ  DDA L ++VN
Sbjct:    47 MDLKVLQFKNKKLAERLEQRQACEDELRERIEKLEKRQATDDATL-LIVN 95

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0033523 "histone H2B ubiquitination" evidence=IEA

GO:0033503 "HULC complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0010390 "histone monoubiquitination" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1BCI2 RNF40 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 164 (62.8 bits), Expect = 7.2e-11, P = 7.2e-11
 Identities = 34/50 (68%), Positives = 41/50 (82%)

Query:     1 MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVVVN 50
             MD+KVLQF+NKKLA+RLEQ+   E ELR RIE+LEKRQ  DDA L ++VN
Sbjct:    47 MDLKVLQFKNKKLAERLEQRQACEDELRERIEKLEKRQATDDATL-LIVN 95

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0033523 "histone H2B ubiquitination" evidence=IEA

GO:0033503 "HULC complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0010390 "histone monoubiquitination" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E2R1L5 RNF40 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 164 (62.8 bits), Expect = 7.2e-11, P = 7.2e-11
 Identities = 34/50 (68%), Positives = 41/50 (82%)

Query:     1 MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVVVN 50
             MD+KVLQF+NKKLA+RLEQ+   E ELR RIE+LEKRQ  DDA L ++VN
Sbjct:    47 MDLKVLQFKNKKLAERLEQRQACEDELRERIEKLEKRQATDDATL-LIVN 95

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0033523 "histone H2B ubiquitination" evidence=IEA

GO:0033503 "HULC complex" evidence=IEA

GO:0031625 "ubiquitin protein ligase binding" evidence=IEA

GO:0010390 "histone monoubiquitination" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|O75150 RNF40 "E3 ubiquitin-protein ligase BRE1B" [Homo sapiens (taxid:9606)]

 Score = 164 (62.8 bits), Expect = 7.2e-11, P = 7.2e-11
 Identities = 34/50 (68%), Positives = 41/50 (82%)

Query:     1 MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVVVN 50
             MD+KVLQF+NKKLA+RLEQ+   E ELR RIE+LEKRQ  DDA L ++VN
Sbjct:    47 MDLKVLQFKNKKLAERLEQRQACEDELRERIEKLEKRQATDDATL-LIVN 95

GO:0008270 "zinc ion binding" evidence=IEA

GO:0017075 "syntaxin-1 binding" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=ISS

GO:0033523 "histone H2B ubiquitination" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0010390 "histone monoubiquitination" evidence=IDA

GO:0000151 "ubiquitin ligase complex" evidence=IDA

GO:0031625 "ubiquitin protein ligase binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0043005 "neuron projection" evidence=ISS

GO:0033503 "HULC complex" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q5RAU7 RNF40 "E3 ubiquitin-protein ligase BRE1B" [Pongo abelii (taxid:9601)]

 Score = 164 (62.8 bits), Expect = 7.2e-11, P = 7.2e-11
 Identities = 34/50 (68%), Positives = 41/50 (82%)

Query:     1 MDIKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDAVLNVVVN 50
             MD+KVLQF+NKKLA+RLEQ+   E ELR RIE+LEKRQ  DDA L ++VN
Sbjct:    47 MDLKVLQFKNKKLAERLEQRQACEDELRERIEKLEKRQATDDATL-LIVN 95

GO:0000151 "ubiquitin ligase complex" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0010390 "histone monoubiquitination" evidence=ISS

GO:0031625 "ubiquitin protein ligase binding" evidence=ISS

GO:0033503 "HULC complex" evidence=ISS

GO:0033523 "histone H2B ubiquitination" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q3U319	BRE1B_MOUSE	6, ., 3, ., 2, ., -	0.6875	0.7384	0.0479	yes	N/A
Q8CJB9	BRE1B_RAT	6, ., 3, ., 2, ., -	0.6875	0.7384	0.0479	yes	N/A
Q5RAU7	BRE1B_PONAB	6, ., 3, ., 2, ., -	0.6875	0.7384	0.0479	yes	N/A
Q9VRP9	BRE1_DROME	6, ., 3, ., 2, ., -	0.875	0.7384	0.0459	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	65
4emc_A	190	Monopolin complex subunit CSM1; RWD domain, kineto	82.13
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	81.62
3m91_A	51	Proteasome-associated ATPase; coil COIL alpha heli	80.42

>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A

Probab=82.13  E-value=1.5  Score=30.66  Aligned_cols=41  Identities=20%  Similarity=0.289  Sum_probs=34.4

Q ss_pred             hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhhccccchh
Q psy4021           3 IKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQTQDDA   43 (65)
Q Consensus         3 i~vLQ~QNqKLsQ~Le~q~~~~~~Le~rieqLe~rQa~dD~   43 (65)
                      +.-|+.+|.-|+++|+.+..++..|+.++..++..-...|.
T Consensus        22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~~~~~   62 (190)
T 4emc_A           22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVKELKT   62 (190)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            45688999999999999999999999999888876654443

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=81.62  E-value=0.98  Score=28.56  Aligned_cols=37  Identities=16%  Similarity=0.188  Sum_probs=33.3

Q ss_pred             hhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy4021           3 IKVLQFQNKKLAQRLEQKNRAEAELRSRIEQLEKRQT   39 (65)
Q Consensus         3 i~vLQ~QNqKLsQ~Le~q~~~~~~Le~rieqLe~rQa   39 (65)
                      .+||.|.|.+.+...+..+.....|+.-++.|+.+=.
T Consensus        56 TKVlH~~~NPa~~a~~~~~~~~e~Lq~E~erLr~~v~   92 (100)
T 1go4_E           56 TKVLHMSLNPTSVARQRLREDHSQLQAECERLRGLLR   92 (100)
T ss_dssp             EEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CeeeeecCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999987643

>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A

Probab=80.42  E-value=3.6  Score=23.03  Aligned_cols=32  Identities=25%  Similarity=0.400  Sum_probs=28.0

Q ss_pred             hhhhhccHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy4021           4 KVLQFQNKKLAQRLEQKNRAEAELRSRIEQLE   35 (65)
Q Consensus         4 ~vLQ~QNqKLsQ~Le~q~~~~~~Le~rieqLe   35 (65)
                      ..|.-+|.+|++-|+.-+.++..|.+.++.|-
T Consensus        19 ~~L~~rN~rL~~~L~~AR~el~~Lkeele~La   50 (51)
T 3m91_A           19 DSLAARNSKLMETLKEARQQLLALREEVDRLG   50 (51)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            35667899999999999999999999999874

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00