Psyllid ID: psy4112

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280----
Protein Sequence
MLSTLAKLTLIVLICHVHWTHNILLESVYQKYLRQQGLEFRENIFLGNKPILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYLKS
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEcccHHHHHHHHHcccccccEEEEEccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHcccccccccccHHHHHHHcccccccccccccccccccEEEccccccHHHHHHHccccccccccccccccHHHHHHHHHHHHcccccccccccccccEEEEcccHHccccccccccHHHccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHccccEEEEEEcccHHHHHHHHHHcccccccEEEEcccccccccEHcHHHHHHHcccccccEEEccccccccHHHcccccccccccccEEcccHHHHHHHHEcccHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccEEEcccccHHHHccccccccccEEEEEccccccHHHHHHHHHHHHcccccccccccccccccEEEEEEEEccccEccHHHHHHcc
Coil and Loop (DISEMBL)
MLSTLAKLTLIVLICHVHWTHNILLESVYQKYLRQQGLefreniflgnkpilseydfvIIGGGVGGSVVANRLSENPKWKVLLLEsgedeniytnipllahfnslthfnwgyklekneehpqclgmyndqcpcprgkglggssiLNYMIYTrgnkkdydtyeaagnkgwgyDSVLKYFLKSenntsefldadihsregplkvtnipyqnlltekftqakegplkvtnipyqnlLTEKFTQAACELGYriydytgiepategFSKLQSTLSKGQRYSANRAYLKS
Flexible Loop (DISEMBL)
MLSTLAKLTLIVLICHVHWTHNILLESVYQKYLRQQGLEFRENIFLGNKPILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEkftqakegplkVTNIPYQNLLTEKFTQAACELGYRIYDYTGIEPATEGFSKLqstlskgqrysanraylks
Low Complexity Region (SEG)
MLSTLAKLTLIVLICHVHWTHNILLESVYQKYLRQQGLEFRENIFLGNKPILSEYDFviigggvggsvvANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYLKS
Disordered region (IsUnstruct)
****LAKLTLIVLICHVHWTHNILLESVYQKYLRQQGLEFRENIFLGNKPILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIYDYTGIEPAT*************************
Disordered Region (DISOPRED)
**STLAKLTLIVLICHVHWTHNILLESVYQKYLRQQGL***********PILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYLKS
Disordered Region (DISEMBL)
MLSTLAKLTLIVLICHVHWTHNILLESVYQKYLRQQGLEFRENIFLGNKPILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYLKS
Disordered Region (DISPRO)
MLSTLAKLTLIVLICHVHWTHNILLESVYQKYLRQQGLEFRENIFLGNKPILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYLKS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLSTLAKLTLIVLICHVHWTHNILLESVYQKYLRQQGLEFRENIFLGNKPILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYLKS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	284	2.2.26 [Sep-21-2011]
P18173	625	Glucose dehydrogenase [ac	no	N/A	0.718	0.326	0.413	5e-39
P18172	625	Glucose dehydrogenase [ac	no	N/A	0.718	0.326	0.4	7e-38
C3MIE4	549	Choline dehydrogenase OS=	yes	N/A	0.693	0.358	0.360	1e-28
Q8UH55	549	Choline dehydrogenase OS=	yes	N/A	0.693	0.358	0.339	2e-27
A6U6Y8	549	Choline dehydrogenase OS=	yes	N/A	0.693	0.358	0.356	3e-27
P54223	549	Choline dehydrogenase OS=	yes	N/A	0.693	0.358	0.351	8e-27
B9JBA2	549	Choline dehydrogenase OS=	no	N/A	0.693	0.358	0.360	2e-26
B3PTE0	549	Choline dehydrogenase OS=	yes	N/A	0.693	0.358	0.356	5e-26
Q2KB43	549	Choline dehydrogenase OS=	yes	N/A	0.693	0.358	0.356	5e-26
B5ZUG2	549	Choline dehydrogenase OS=	no	N/A	0.693	0.358	0.356	6e-26

>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld PE=3 SV=3

 Score =  161 bits (408), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 95/230 (41%), Positives = 125/230 (54%), Gaps = 26/230 (11%)

Query: 54  EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYK 113
           EYDF++IGGG  GSVVA+RLSE P+WKVLL+E+G DE +   IP +  F +    +  Y+
Sbjct: 64  EYDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSM--FLNFIGSDIDYR 121

Query: 114 LEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGYDS 173
                E   CL     +C  PRGK LGG+S+LN M+Y RGN++DYD + A GN GW Y+ 
Sbjct: 122 YNTEPEPMACLSSMEQRCYWPRGKVLGGTSVLNGMMYVRGNREDYDDWAADGNPGWAYND 181

Query: 174 VLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQNL 233
           VL +F KSE+N    LD D    E                    AK G L V   PY   
Sbjct: 182 VLPFFKKSEDN----LDLDEVGTE------------------YHAKGGLLPVGKFPYNPP 219

Query: 234 LTEKFTQAACELGYRIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
           L+    +A  ELG+ ++D  G    + GF   Q T   G RYS+ RA+L+
Sbjct: 220 LSYAILKAGEELGFSVHDLNGQN--STGFMIAQMTARNGIRYSSARAFLR 267

Essential for cuticular modification during development.
Drosophila melanogaster (taxid: 7227)
EC: 1EC: .EC: 1EC: .EC: 9EC: 9EC: .EC: 1EC: 0

>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura pseudoobscura GN=Gld PE=3 SV=4

 Score =  157 bits (398), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 92/230 (40%), Positives = 123/230 (53%), Gaps = 26/230 (11%)

Query: 54  EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYK 113
           EYDF++IGGG  GSVVA+RLSE P+WKVLL+E+G DE +   IP +  F +    +  Y+
Sbjct: 64  EYDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSM--FLNFIGSDIDYR 121

Query: 114 LEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGYDS 173
                E   CL     +C  PRGK LGG+S++N M+Y RGN++DYD + A GN GW Y  
Sbjct: 122 YNTEPERMACLSSMEQRCYWPRGKVLGGTSVMNGMMYIRGNREDYDDWAAQGNPGWSYQD 181

Query: 174 VLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQNL 233
           VL +F KSE+N    L+ D    E                    AK G L V   PY   
Sbjct: 182 VLPFFKKSEDN----LELDAVGTE------------------YHAKGGLLPVGKFPYNPP 219

Query: 234 LTEKFTQAACELGYRIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
           L+    +A  E+G+ + D  G    + GF   Q T   G RYS+ RA+L+
Sbjct: 220 LSYALLKAGEEMGFSVQDLNGQN--STGFMIAQMTARNGIRYSSARAFLR 267

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

EC: 0

>sp|C3MIE4|BETA_RHISN Choline dehydrogenase OS=Rhizobium sp. (strain NGR234) GN=betA PE=3 SV=1

 Score =  127 bits (318), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 84/233 (36%), Positives = 121/233 (51%), Gaps = 36/233 (15%)

Query: 54  EYDFVIIGGGVGGSVVANRLSENPKWKVLLLE-SGEDENIYTNIPL-LAHFNSLTHFNWG 111
           + D++IIG G  GS +A+RLSE+ +  V++LE  G D   +  +P  LA   S+  +NWG
Sbjct: 2   QADYIIIGSGSAGSALAHRLSEDSRNSVIVLEFGGTDIGPFIQMPAALAWPMSMNRYNWG 61

Query: 112 YKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGY 171
           Y L + E H     + N +   PRGK +GGSS +N M+Y RG+ +D+D +E  G KGW Y
Sbjct: 62  Y-LSEPEPH-----LNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFDRWEQLGAKGWAY 115

Query: 172 DSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQ 231
             VL YF + E           HS  G              E   +  +GPL V   P +
Sbjct: 116 ADVLPYFKRME-----------HSHGG--------------EDGWRGTDGPLHVQRGPVK 150

Query: 232 NLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
           N L   F +A  + G+ +  DY G +   EGF  ++ T  +G+R+SA  AYLK
Sbjct: 151 NPLFHAFVEAGKQAGFEMTDDYNGSK--QEGFGLMEQTTWRGRRWSAASAYLK 201

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Rhizobium sp. (strain NGR234) (taxid: 394)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q8UH55|BETA_AGRT5 Choline dehydrogenase OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=betA PE=3 SV=2

 Score =  123 bits (308), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/233 (33%), Positives = 119/233 (51%), Gaps = 36/233 (15%)

Query: 54  EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG-EDENIYTNIPL-LAHFNSLTHFNWG 111
           + D+VI+G G  GS +A RLSE+ ++ V+++E+G  D   +  +P  LA   S+  +NWG
Sbjct: 2   QADYVIVGSGSAGSAIAYRLSEDGRYSVIVIEAGGSDFGPFIQMPAALAWPMSMKRYNWG 61

Query: 112 YKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGY 171
           Y  E          + N +   PRGK +GGSS +N ++Y RG+ +D++ +E  G +GW Y
Sbjct: 62  YLSEPEPN------LDNRRITAPRGKVIGGSSSINGLVYVRGHAEDFNRWEELGAQGWAY 115

Query: 172 DSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQ 231
             VL YF + E           HS  G              E+  +  +GPL V   P  
Sbjct: 116 ADVLPYFKRME-----------HSHGG--------------EEGWRGTDGPLHVQRGPVS 150

Query: 232 NLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
           N L   F QA  + G+ +  DY G +   EGF  ++ T+  G+R+SA  AYLK
Sbjct: 151 NPLFHAFIQAGAQAGFELTDDYNGSK--QEGFGLMEQTIHNGRRWSAANAYLK 201

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Agrobacterium tumefaciens (strain C58 / ATCC 33970) (taxid: 176299)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|A6U6Y8|BETA_SINMW Choline dehydrogenase OS=Sinorhizobium medicae (strain WSM419) GN=betA PE=3 SV=1

 Score =  122 bits (306), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 83/233 (35%), Positives = 119/233 (51%), Gaps = 36/233 (15%)

Query: 54  EYDFVIIGGGVGGSVVANRLSENPKWKVLLLE-SGEDENIYTNIPL-LAHFNSLTHFNWG 111
           + DFVIIG G  GS +A RLSE+    V++LE  G D   +  +P  LA   S+  +NWG
Sbjct: 2   QADFVIIGSGSAGSALAYRLSEDGANSVVVLEFGGSDVGPFIQMPAALAWPMSMNRYNWG 61

Query: 112 YKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGY 171
           Y    +E  P    + N +   PRGK +GGSS +N M+Y RG+ +D+D +E  G KGW Y
Sbjct: 62  YL---SEPEPN---LNNRRITAPRGKVIGGSSSINGMVYVRGHSEDFDRWEELGAKGWAY 115

Query: 172 DSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQ 231
             VL Y+ + E           HS  G              E+  +  +GPL V   P +
Sbjct: 116 ADVLPYYKRME-----------HSHGG--------------EEGWRGTDGPLHVQRGPVK 150

Query: 232 NLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
           N L   F +A  + G+ +  DY G +   EGF  ++ T  +G+R+SA  AYL+
Sbjct: 151 NPLFHAFIEAGKQAGFEVTEDYNGSK--QEGFGLMEQTTWRGRRWSAASAYLR 201

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Sinorhizobium medicae (strain WSM419) (taxid: 366394)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|P54223|BETA_RHIME Choline dehydrogenase OS=Rhizobium meliloti (strain 1021) GN=betA PE=3 SV=2

 Score =  120 bits (302), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 82/233 (35%), Positives = 120/233 (51%), Gaps = 36/233 (15%)

Query: 54  EYDFVIIGGGVGGSVVANRLSENPKWKVLLLE-SGEDENIYTNIPL-LAHFNSLTHFNWG 111
           + DFVIIG G  GS +A RLSE+ +  V++LE  G D   +  +P  LA   S+  +NWG
Sbjct: 2   QADFVIIGSGSAGSALAYRLSEDGRNSVIVLEFGGSDVGPFIQMPAALAWPMSMNRYNWG 61

Query: 112 YKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGY 171
           Y    +E  P    + N +   PRGK +GGSS +N M+Y RG+ +D++ +E  G +GW Y
Sbjct: 62  YL---SEPEPN---LNNRRITAPRGKVIGGSSSINGMVYVRGHSEDFNRWEELGAQGWAY 115

Query: 172 DSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQ 231
             VL Y+ + E           HS  G              E+  +  +GPL V   P +
Sbjct: 116 ADVLPYYKRME-----------HSHGG--------------EEGWRGTDGPLHVQRGPVK 150

Query: 232 NLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
           N L   F +A  E G+ +  DY G +   EGF  ++ T  +G+R+SA  AYL+
Sbjct: 151 NPLFHAFIEAGKEAGFEVTEDYNGSK--QEGFGLMEQTTWRGRRWSAASAYLR 201

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Rhizobium meliloti (strain 1021) (taxid: 266834)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|B9JBA2|BETA_AGRRK Choline dehydrogenase OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=betA PE=3 SV=1

 Score =  120 bits (300), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 84/233 (36%), Positives = 119/233 (51%), Gaps = 36/233 (15%)

Query: 54  EYDFVIIGGGVGGSVVANRLSENPKWKVLLLE-SGEDENIYTNIPL-LAHFNSLTHFNWG 111
           + DFVIIG G  GS +A+RLSE+ K  V++LE  G D   +  +P  LA   S+  +NWG
Sbjct: 2   QADFVIIGSGSAGSAMASRLSEDGKHTVIVLEFGGSDVGPFIQMPAALAWPMSMDRYNWG 61

Query: 112 YKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGY 171
           Y    +E  PQ   + N +   PRGK +GGSS +N M+Y RG+ +D++ +E  G +GW Y
Sbjct: 62  YL---SEPEPQ---LNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGAQGWAY 115

Query: 172 DSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQ 231
             VL YF + E           HS  G              E+  +  +GPL V     +
Sbjct: 116 ADVLPYFKRME-----------HSHGG--------------EEGWRGTDGPLHVRRGDAR 150

Query: 232 NLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
           N L   F +A  + G+    DY G +   EGF  ++ T   G+R+SA  AYLK
Sbjct: 151 NPLFHAFIEAGKQAGFEATEDYNGGK--QEGFGLMEQTTWMGRRWSAATAYLK 201

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Agrobacterium radiobacter (strain K84 / ATCC BAA-868) (taxid: 311403)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|B3PTE0|BETA_RHIE6 Choline dehydrogenase OS=Rhizobium etli (strain CIAT 652) GN=betA PE=3 SV=1

 Score =  118 bits (296), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/233 (35%), Positives = 118/233 (50%), Gaps = 36/233 (15%)

Query: 54  EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG-EDENIYTNIPL-LAHFNSLTHFNWG 111
           + DFVIIG G  GS +A RLSE+ K  VL++E+G  D   +  +P  LA   S+  +NWG
Sbjct: 2   QADFVIIGSGSAGSALAYRLSEDGKNSVLVIEAGGSDFGPFIQMPAALAWPMSMKRYNWG 61

Query: 112 YKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGY 171
           Y    +E  P    + N +   PRGK +GGSS +N M+Y RG+ +D++ +E  G  GW Y
Sbjct: 62  YL---SEPEPN---LNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGASGWAY 115

Query: 172 DSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQ 231
             VL YF + E           HS  G              E+  +  +GPL V    + 
Sbjct: 116 ADVLPYFKRME-----------HSHGG--------------EEGWRGTDGPLHVQRGGFT 150

Query: 232 NLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
           N L   F +A  + G+    DY G +   EGF  ++ T+  G+R+SA  AYLK
Sbjct: 151 NPLFRAFIEAGKQAGFETTDDYNGSK--QEGFGLMEQTIFSGRRWSAANAYLK 201

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Rhizobium etli (strain CIAT 652) (taxid: 491916)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|Q2KB43|BETA_RHIEC Choline dehydrogenase OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=betA PE=3 SV=1

 Score =  118 bits (295), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 83/233 (35%), Positives = 118/233 (50%), Gaps = 36/233 (15%)

Query: 54  EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG-EDENIYTNIPL-LAHFNSLTHFNWG 111
           + DFVIIG G  GS +A RLSE+ K  VL++E+G  D   +  +P  LA   S+  +NWG
Sbjct: 2   QADFVIIGSGSAGSALAYRLSEDGKNSVLVIEAGGSDFGPFIQMPAALAWPMSMKRYNWG 61

Query: 112 YKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGY 171
           Y    +E  P    + N +   PRGK +GGSS +N M+Y RG+ +D++ +E  G  GW Y
Sbjct: 62  YL---SEPEPN---LNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGASGWAY 115

Query: 172 DSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQ 231
             VL YF + E           HS  G              E+  +  +GPL V    + 
Sbjct: 116 ADVLPYFKRME-----------HSHGG--------------EEGWRGTDGPLHVQRGGFT 150

Query: 232 NLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
           N L   F +A  + G+    DY G +   EGF  ++ T+  G+R+SA  AYLK
Sbjct: 151 NPLFRAFIEAGKQAGFETTEDYNGSK--QEGFGLMEQTIFAGRRWSAANAYLK 201

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Rhizobium etli (strain CFN 42 / ATCC 51251) (taxid: 347834)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

>sp|B5ZUG2|BETA_RHILW Choline dehydrogenase OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=betA PE=3 SV=1

 Score =  118 bits (295), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 83/233 (35%), Positives = 118/233 (50%), Gaps = 36/233 (15%)

Query: 54  EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG-EDENIYTNIPL-LAHFNSLTHFNWG 111
           + DFVIIG G  GS +A RLSE+ K  VL++E+G  D   +  +P  LA   S+  +NWG
Sbjct: 2   QADFVIIGSGSAGSALAYRLSEDGKNSVLVIEAGGSDFGPFIQMPAALAWPMSMKRYNWG 61

Query: 112 YKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGY 171
           Y    +E  P    + N +   PRGK +GGSS +N M+Y RG+ +D++ +E  G  GW Y
Sbjct: 62  YL---SEPEPN---LNNRRITAPRGKVIGGSSSINGMVYVRGHAEDFNRWEELGAGGWAY 115

Query: 172 DSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQ 231
             VL YF + E           HS  G              E+  +  +GPL V    + 
Sbjct: 116 ADVLPYFKRME-----------HSHGG--------------EEGWRGTDGPLHVQRGGFT 150

Query: 232 NLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
           N L   F +A  + G+    DY G +   EGF  ++ T+  G+R+SA  AYLK
Sbjct: 151 NPLFRAFVEAGKQAGFETTEDYNGSK--QEGFGLMEQTIFSGRRWSAANAYLK 201

Can catalyze the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine.

Rhizobium leguminosarum bv. trifolii (strain WSM2304) (taxid: 395492)

EC: 1

EC: .

EC: 1

EC: .

EC: 9

EC: 9

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	284
328716099	580	PREDICTED: glucose dehydrogenase [accept	0.816	0.4	0.488	2e-59
328717265	581	PREDICTED: glucose dehydrogenase [accept	0.809	0.395	0.488	5e-59
328711015	229	PREDICTED: glucose dehydrogenase [accept	0.669	0.829	0.541	4e-53
193620141	623	PREDICTED: glucose dehydrogenase [accept	0.788	0.359	0.410	7e-49
91088309	604	PREDICTED: similar to glucose dehydrogen	0.714	0.336	0.441	8e-49
242018470	624	glucose dehydrogenase precursor, putativ	0.809	0.368	0.405	1e-48
270011798	492	hypothetical protein TcasGA2_TC005874 [T	0.714	0.412	0.441	1e-48
157104218	570	glucose dehydrogenase [Aedes aegypti] gi	0.704	0.350	0.452	1e-48
242018478	621	glucose dehydrogenase precursor, putativ	0.735	0.336	0.454	1e-48
345483273	620	PREDICTED: glucose dehydrogenase [accept	0.714	0.327	0.462	2e-48

>gi|328716099|ref|XP_001945793.2| PREDICTED: glucose dehydrogenase [acceptor]-like [Acyrthosiphon pisum]

 Score =  235 bits (599), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 128/262 (48%), Positives = 165/262 (62%), Gaps = 30/262 (11%)

Query: 24  LLESVYQKYLRQQGLEFRENIFLGNKPILSEYDFVIIGGGVGGSVVANRLSENPKWKVLL 83
           L +S+Y +YL QQG+ FREN FLGNKPIL EYDF++IG G GGSVVANRLSE   W VLL
Sbjct: 22  LFQSIYGQYL-QQGIPFRENTFLGNKPILREYDFIVIGAGPGGSVVANRLSEQSNWSVLL 80

Query: 84  LESGEDENIYTNIPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSS 143
           LE+G+DE++YT+IP    F   T +NWGY  E  +    CLG  N++CP P+GKG+GGSS
Sbjct: 81  LEAGQDESVYTDIPGATGFLEATDYNWGYTAEPVKN--GCLGFKNNRCPWPKGKGMGGSS 138

Query: 144 ILNYMIYTRGNKKDYDTYEAAGNKGWGYDSVLKYFLKSENNT-SEFLDADIHSREGPLKV 202
           I+N M YTRG K+DYDT    GN GW Y  VL YFLKSENN+  E+ ++  HS++G L V
Sbjct: 139 IINAMFYTRGKKEDYDTIATLGNDGWAYSDVLPYFLKSENNSVPEYRNSPFHSQKGNLHV 198

Query: 203 TNIPYQNLLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGY-RIYDYTGIEPATEG 261
             + Y                        +LL +KF +A  ELG  +  D+T + P   G
Sbjct: 199 ERVRY-----------------------HSLLADKFIEAGGELGLNKNIDFT-VNPEN-G 233

Query: 262 FSKLQSTLSKGQRYSANRAYLK 283
            S+LQ T   G R SA++AY++
Sbjct: 234 VSRLQVTTLNGHRVSASKAYIR 255

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

>gi|328717265|ref|XP_001944179.2| PREDICTED: glucose dehydrogenase [acceptor]-like [Acyrthosiphon pisum]

 Score =  234 bits (596), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 127/260 (48%), Positives = 169/260 (65%), Gaps = 30/260 (11%)

Query: 26  ESVYQKYLRQQGLEFRENIFLGNKPILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLE 85
           +S Y +Y +QQ + FREN F+GN+PIL EYDF++IG G GG VVANRLSE P W VLLLE
Sbjct: 24  QSTYAQY-QQQEIPFRENSFIGNRPILGEYDFIVIGAGPGGCVVANRLSEQPNWSVLLLE 82

Query: 86  SGEDENIYTNIPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSIL 145
           +G+DE+IYT+IP    F   T++NWGY  E  +    CLG  N++CP P+GKG+GGSSI+
Sbjct: 83  AGQDESIYTDIPAAVPFLEATNYNWGYTAEPVKN--GCLGFKNNRCPWPKGKGMGGSSII 140

Query: 146 NYMIYTRGNKKDYDTYEAAGNKGWGYDSVLKYFLKSENNT-SEFLDADIHSREGPLKVTN 204
           N MIYTRG K+DYDT  A GN GW YD VL YFLKSENN+  E+ ++  HS++G      
Sbjct: 141 NAMIYTRGKKEDYDTIAALGNDGWSYDDVLPYFLKSENNSIPEYQNSPFHSQKG------ 194

Query: 205 IPYQNLLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRI-YDYTGIEPATEGFS 263
               NL  E+             + Y +  T+KF +A  ELG +   DYT I+P   G S
Sbjct: 195 ----NLHVER-------------VRYHSPFTDKFIEAGGELGLKKNIDYT-IDPEY-GVS 235

Query: 264 KLQSTLSKGQRYSANRAYLK 283
           +LQ+    G+R SA++A+++
Sbjct: 236 RLQAATLNGRRVSASKAFIR 255

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

>gi|328711015|ref|XP_003244423.1| PREDICTED: glucose dehydrogenase [acceptor]-like, partial [Acyrthosiphon pisum]

 Score =  214 bits (545), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 105/194 (54%), Positives = 137/194 (70%), Gaps = 4/194 (2%)

Query: 26  ESVYQKYLRQQGLEFRENIFLGNKPILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLE 85
           +S Y +Y +QQ + FREN F+G++PIL EYDF++IG G GG VVANRLSE P W VLLLE
Sbjct: 7   QSTYAQY-QQQEIPFRENSFIGDRPILDEYDFIVIGAGPGGCVVANRLSEQPNWSVLLLE 65

Query: 86  SGEDENIYTNIPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSIL 145
           +G+DE+IYT+IP    F   T +NWGY  E  +    C G  +++CP P+GKG+GGSSI+
Sbjct: 66  AGQDESIYTDIPGAVLFLDGTSYNWGYTAEPAKN--ACFGYKDNRCPWPKGKGMGGSSII 123

Query: 146 NYMIYTRGNKKDYDTYEAAGNKGWGYDSVLKYFLKSENNT-SEFLDADIHSREGPLKVTN 204
           N MIYTRG K+DYDT  A GN GW YD VL YFLKSENN+  E+ ++  HS++G L V  
Sbjct: 124 NAMIYTRGKKEDYDTIAALGNDGWSYDDVLPYFLKSENNSIPEYQNSPFHSQKGNLHVER 183

Query: 205 IPYQNLLTEKFTQA 218
           + Y +   +KF +A
Sbjct: 184 VRYHSSYVDKFIEA 197

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

>gi|193620141|ref|XP_001952665.1| PREDICTED: glucose dehydrogenase [acceptor]-like isoform 1 [Acyrthosiphon pisum] gi|328705616|ref|XP_003242858.1| PREDICTED: glucose dehydrogenase [acceptor]-like isoform 2 [Acyrthosiphon pisum]

 Score =  200 bits (508), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 103/251 (41%), Positives = 152/251 (60%), Gaps = 27/251 (10%)

Query: 34  RQQGLEFRENIFLGNKPILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIY 93
           R   ++FRE+   G KPIL EYDF+++G G  G+ VA RL+E P+WK+LLLE+G+ E+I 
Sbjct: 35  RTNLIQFREDPLFGYKPILDEYDFIVVGSGASGATVARRLAEVPEWKILLLEAGKQESIA 94

Query: 94  TNIPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRG 153
           T++P +AH+   T FNW +K E  EE   C G+ N +C  P+GKGLGGS+I+N  IYTRG
Sbjct: 95  TSVPAIAHYFQFTDFNWAFKTE--EEPNACQGVVNKRCLWPQGKGLGGSTIINNNIYTRG 152

Query: 154 NKKDYDTYEAAGNKGWGYDSVLKYFLKSENNT-SEFLDADIHSREGPLKVTNIPYQNLLT 212
           N +D+D +  AGN GW Y  VL YFLK+E+ T  E   +  H   GP+ ++   Y     
Sbjct: 153 NVRDFDRWAEAGNPGWSYRDVLPYFLKNEDVTIPELKRSPYHGVGGPMPIS---YS---- 205

Query: 213 EKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIYDYTGIEPATEGFSKLQSTLSKG 272
                           P+++ L E F ++A ++G  + DY     +  GFS++Q T++ G
Sbjct: 206 ----------------PFKSRLVEAFLESAPQVGLNVVDYNNPN-SHVGFSRIQGTINFG 248

Query: 273 QRYSANRAYLK 283
           +R ++ RAYL+
Sbjct: 249 RRVTSARAYLR 259

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

>gi|91088309|ref|XP_969421.1| PREDICTED: similar to glucose dehydrogenase [Tribolium castaneum]

 Score =  199 bits (507), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 102/231 (44%), Positives = 144/231 (62%), Gaps = 28/231 (12%)

Query: 54  EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYK 113
            YDFV++G G GG VVANRLSENP+W VLLLE+G+DEN  T++PL+A   ++T +NWGYK
Sbjct: 41  SYDFVVVGAGSGGCVVANRLSENPEWSVLLLEAGDDENFLTDVPLIASLQTITSYNWGYK 100

Query: 114 LEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGYDS 173
            E+      CLG+ + +C  PRGK LGG+S++N+++YTRG K+D+D +   GN GWGYD 
Sbjct: 101 SERLAT--ACLGLIDGRCNMPRGKALGGTSVINFLLYTRGTKQDFDQWAELGNPGWGYDQ 158

Query: 174 VLKYFLKSENNTS-EFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQN 232
           VL YF+KSEN T    +D   H + G L V +  Y++ L ++F ++ E            
Sbjct: 159 VLPYFIKSENCTKCREIDGKYHGKSGYLSVEHPGYESPLVKRFIKSGE------------ 206

Query: 233 LLTEKFTQAACELGYRIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
                      ELGY+  D +   P   GFSK+ +T+  G R SA++A+LK
Sbjct: 207 -----------ELGYKNNDPSA--PYGLGFSKVLATMRNGMRCSASKAFLK 244

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018470|ref|XP_002429698.1| glucose dehydrogenase precursor, putative [Pediculus humanus corporis] gi|212514701|gb|EEB16960.1| glucose dehydrogenase precursor, putative [Pediculus humanus corporis]

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 105/259 (40%), Positives = 153/259 (59%), Gaps = 29/259 (11%)

Query: 28  VYQKYLR-QQGLEF-RENIFLGNKPILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLE 85
           +++K++R  +   F  +  F    PI  EYDF++IG G  G+ VANRLSE   W VLL+E
Sbjct: 28  IFEKWIRLHKNYVFGTDESFYKQSPIEEEYDFIVIGSGPSGAAVANRLSEISDWNVLLVE 87

Query: 86  SGEDENIYTNIPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSIL 145
           +G++  +  +IP+LA    L+ +NWG+K E+  E   C+GM   +C  P+GK LGG+S++
Sbjct: 88  AGKEPTLVLDIPMLASIGVLSEYNWGFKAER--EEGVCMGMEEGRCRWPKGKCLGGTSVI 145

Query: 146 NYMIYTRGNKKDYDTYEAAGNKGWGYDSVLKYFLKSE-NNTSEFLDADIHSREGPLKVTN 204
           NYMIYTRGNK+D+D +   GN+GWGY  V  YF+KSE +    F  +  H +EGP+ V  
Sbjct: 146 NYMIYTRGNKEDFDEWARDGNEGWGYKDVWPYFVKSEKSRIPHFRHSVSHGQEGPVTVDF 205

Query: 205 IPYQNLLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIYDYTGIEPATEGFSK 264
           +PYQ  L + F QA +                       E+GY++ DY    P   GF+K
Sbjct: 206 LPYQTKLIDAFLQAGQ-----------------------EMGYKLIDYNDGTPPL-GFAK 241

Query: 265 LQSTLSKGQRYSANRAYLK 283
           +Q T+  G+R+SA RAYL+
Sbjct: 242 VQGTVENGRRFSAERAYLR 260

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270011798|gb|EFA08246.1| hypothetical protein TcasGA2_TC005874 [Tribolium castaneum]

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 102/231 (44%), Positives = 144/231 (62%), Gaps = 28/231 (12%)

Query: 54  EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYK 113
            YDFV++G G GG VVANRLSENP+W VLLLE+G+DEN  T++PL+A   ++T +NWGYK
Sbjct: 41  SYDFVVVGAGSGGCVVANRLSENPEWSVLLLEAGDDENFLTDVPLIASLQTITSYNWGYK 100

Query: 114 LEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGYDS 173
            E+      CLG+ + +C  PRGK LGG+S++N+++YTRG K+D+D +   GN GWGYD 
Sbjct: 101 SERLAT--ACLGLIDGRCNMPRGKALGGTSVINFLLYTRGTKQDFDQWAELGNPGWGYDQ 158

Query: 174 VLKYFLKSENNTS-EFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQN 232
           VL YF+KSEN T    +D   H + G L V +  Y++ L ++F ++ E            
Sbjct: 159 VLPYFIKSENCTKCREIDGKYHGKSGYLSVEHPGYESPLVKRFIKSGE------------ 206

Query: 233 LLTEKFTQAACELGYRIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
                      ELGY+  D +   P   GFSK+ +T+  G R SA++A+LK
Sbjct: 207 -----------ELGYKNNDPSA--PYGLGFSKVLATMRNGMRCSASKAFLK 244

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157104218|ref|XP_001648306.1| glucose dehydrogenase [Aedes aegypti] gi|108880421|gb|EAT44646.1| AAEL004015-PA, partial [Aedes aegypti]

 Score =  199 bits (506), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 105/232 (45%), Positives = 139/232 (59%), Gaps = 32/232 (13%)

Query: 54  EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYK 113
           EYDF+I+GGG  G+V+ANRLSE  +WK+LL+E+G ++N  ++IPL A +   T  NW + 
Sbjct: 3   EYDFIIVGGGNAGAVLANRLSEISQWKILLIEAGGEDNFLSDIPLFAAYLQSTALNWNFS 62

Query: 114 LEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGYDS 173
            EK E    CLGM N++CP PRGKGLGGS+ILNYMIY RGN+ D+D + AAGN+GW Y  
Sbjct: 63  AEKQEG--TCLGMENERCPAPRGKGLGGSTILNYMIYNRGNRADFDNWAAAGNEGWSYKD 120

Query: 174 VLKYFLKSENNTSEFLDAD---IHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPY 230
           VL YF+KSE  T  F D +    H R GP+ V  +PY+  L   F +A E          
Sbjct: 121 VLPYFMKSERAT--FQDTNKIPKHGRGGPVNVEYVPYRTPLVHAFVKANE---------- 168

Query: 231 QNLLTEKFTQAACELGYRIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYL 282
                        ELG +I DY G   +  G   LQ+T  +G+R ++  AYL
Sbjct: 169 -------------ELGRKIMDYNG--DSQLGVDYLQATTKRGKRVTSASAYL 205

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242018478|ref|XP_002429702.1| glucose dehydrogenase precursor, putative [Pediculus humanus corporis] gi|212514705|gb|EEB16964.1| glucose dehydrogenase precursor, putative [Pediculus humanus corporis]

 Score =  199 bits (505), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 106/233 (45%), Positives = 137/233 (58%), Gaps = 24/233 (10%)

Query: 51  ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNW 110
           ILSEYDF+I+GGG  G+VVANRLSENPKWK+LL+E+G DE   +++P LA +  L+  +W
Sbjct: 48  ILSEYDFIIVGGGSAGAVVANRLSENPKWKILLIEAGGDETELSDVPSLAGYMQLSDLDW 107

Query: 111 GYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWG 170
            YK    E+   C  M  D+C  PRGK LGGSS+LN MIY RGNK DYD + A GN GW 
Sbjct: 108 KYKTAPPEDRGYCQAMNGDRCNWPRGKVLGGSSVLNAMIYVRGNKLDYDYWAAQGNTGWS 167

Query: 171 YDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPY 230
           YD VL YFLKSE+N + +L    + +EG                      G L V   P+
Sbjct: 168 YDEVLPYFLKSEDNRNPYLVKTPYHKEG----------------------GYLTVQESPW 205

Query: 231 QNLLTEKFTQAACELGYRIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
           ++ L+  F +A  ELGY I D  G      GF   Q T+ +G R S  +A+L+
Sbjct: 206 RSPLSIAFIKAGKELGYDIRDINGAN--QTGFMIAQGTIRRGSRCSTAKAFLR 256

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345483273|ref|XP_001603522.2| PREDICTED: glucose dehydrogenase [acceptor]-like [Nasonia vitripennis]

 Score =  198 bits (504), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 106/229 (46%), Positives = 141/229 (61%), Gaps = 26/229 (11%)

Query: 55  YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYKL 114
           YDFVIIG G GGSV+ANRLSE   WK+LL+E+G++E   T+IPLLA    +T +NWGY+ 
Sbjct: 38  YDFVIIGAGSGGSVLANRLSEVANWKILLVEAGKEEMFLTDIPLLAPILHITDYNWGYRT 97

Query: 115 E-KNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGYDS 173
           E K+ +   CL M + +C  PRGK LGG+S++N+MIYTRG + DYD +EA GN GW Y  
Sbjct: 98  ERKSGKLGYCLSMTDGRCNWPRGKALGGTSVINFMIYTRGARADYDEWEAMGNPGWAYRD 157

Query: 174 VLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQNL 233
           VL YFLKSEN+  ++ D   HS  G L V+N                       +PY + 
Sbjct: 158 VLPYFLKSENSRLKYQDPRYHSVGGYLDVSN-----------------------VPYVSR 194

Query: 234 LTEKFTQAACELGYRIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYL 282
           L   F Q+A E GY+  DY G   +  GFS +Q+ L  G+R SA++A+L
Sbjct: 195 LRHPFLQSAKEFGYKFNDYNG--ESLMGFSPVQANLRFGRRVSASKAFL 241

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	284
FB|FBgn0030588	621	CG9521 [Drosophila melanogaste	0.679	0.310	0.428	1e-38
FB|FBgn0030591	865	CG9517 [Drosophila melanogaste	0.591	0.194	0.431	4.7e-38
FB|FBgn0030590	703	CG9518 [Drosophila melanogaste	0.742	0.300	0.403	3.2e-37
FB|FBgn0030589	622	CG9519 [Drosophila melanogaste	0.693	0.316	0.412	1.6e-36
FB|FBgn0030587	616	CG9522 [Drosophila melanogaste	0.859	0.396	0.379	2.5e-35
FB|FBgn0030586	626	CG12539 [Drosophila melanogast	0.866	0.392	0.385	1.3e-34
FB|FBgn0030598	626	CG9503 [Drosophila melanogaste	0.602	0.273	0.442	2.2e-34
FB|FBgn0039415	616	CG6142 [Drosophila melanogaste	0.823	0.379	0.345	2e-33
FB|FBgn0001112	625	Gld "Glucose dehydrogenase" [D	0.679	0.308	0.370	3.9e-27
FB|FBgn0030596	633	CG12398 [Drosophila melanogast	0.577	0.259	0.383	1.8e-26

FB|FBgn0030588 CG9521 [Drosophila melanogaster (taxid:7227)]

 Score = 416 (151.5 bits), Expect = 1.0e-38, P = 1.0e-38
 Identities = 87/203 (42%), Positives = 125/203 (61%)

Query:    21 HNILLESVYQKYLR--QQGLEFRENIFLGNKPIL-SEYDFXXXXXXXXXXXXANRLSENP 77
             +N+L E++   +LR  Q  +E  EN    N  IL SEYDF            A RLSENP
Sbjct:    28 NNVLFETI--NFLRRGQADVEL-ENY--DNNVILDSEYDFIVVGAGTAGCALAARLSENP 82

Query:    78 KWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYNDQCPCPRGK 137
             +W+VLLLE+G  E +  ++P++AHF  L   NW Y+ + ++ H  CL M N++C  PRGK
Sbjct:    83 QWRVLLLEAGGPERLVMDVPIVAHFLQLGEMNWKYRTQPSD-HA-CLAMNNNRCNWPRGK 140

Query:   138 GLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGYDSVLKYFLKSENNTSEFLDADIHSRE 197
              +GGSS+LNYM+YTRGN++DYD +EA GN GW +  VL YF K E ++    + D   R 
Sbjct:   141 VMGGSSVLNYMMYTRGNRRDYDRWEALGNPGWSFKDVLPYFKKYEGSSVPDAEEDYVGRN 200

Query:   198 GPLKVTNIPYQNLLTEKFTQAKE 220
             GP+KV+ + +++ + E F  A +
Sbjct:   201 GPVKVSYVNWRSKIAEAFVDAAQ 223

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030591 CG9517 [Drosophila melanogaster (taxid:7227)]

 Score = 350 (128.3 bits), Expect = 4.7e-38, Sum P(2) = 4.7e-38
 Identities = 73/169 (43%), Positives = 96/169 (56%)

Query:    51 ILSEYDFXXXXXXXXXXXXANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNW 110
             I  +YDF            ANRLSE   W VLLLE+G DE   +++P LA +  LT  +W
Sbjct:   292 IRRQYDFVVIGGGSAGAVVANRLSEVRNWTVLLLEAGGDETEISDVPALAGYLQLTELDW 351

Query:   111 GYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWG 170
              Y+   +     C  M  D+C  PRGK LGGSS+LN M+Y RG+K DY+ + + GN GW 
Sbjct:   352 KYQTTPSSTRQYCQAMKGDRCFWPRGKVLGGSSVLNAMVYVRGSKNDYNHWASLGNPGWD 411

Query:   171 YDSVLKYFLKSENNTSEFL-DADIHSREGPLKVTNIPYQNLLTEKFTQA 218
             YDS+LKYFLKSE+  + +L     H   G L V   P++  L+  F QA
Sbjct:   412 YDSMLKYFLKSEDVRNPYLAKTPYHETGGYLTVQEAPWRTPLSIAFLQA 460

GO:0004344 "glucose dehydrogenase activity" evidence=ISS

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030590 CG9518 [Drosophila melanogaster (taxid:7227)]

 Score = 406 (148.0 bits), Expect = 3.2e-37, P = 3.2e-37
 Identities = 88/218 (40%), Positives = 128/218 (58%)

Query:     2 LSTLAKLTLIVLICHVHWTHNILLESVYQKYLRQQGLEFRENIFLGNKPILSEYDFXXXX 61
             ++T+ K T  V+   + W   ++L ++   Y R   ++  E+  L    +  EYDF    
Sbjct:     8 ITTVIKSTFGVVTTGL-WLIPLMLAAI--TYYRYDAVD-PESRPLDQLNLYPEYDFIVVG 63

Query:    62 XXXXXXXXANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYKLEKNEEHP 121
                     ANRLSE  KWKVLL+E+G DEN  +++P LA +  L+  +W YK E + +  
Sbjct:    64 SGSAGAVVANRLSEVRKWKVLLIEAGPDENEISDVPSLAAYLQLSKLDWAYKTEPSTK-- 121

Query:   122 QCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGYDSVLKYFLKS 181
              CLGM N++C  PRG+ LGGSS+LNYM+Y RGN+ DYD + + GN GW YD+VL+YF KS
Sbjct:   122 ACLGMQNNRCNWPRGRVLGGSSVLNYMLYVRGNRHDYDHWASLGNPGWDYDNVLRYFKKS 181

Query:   182 ENNTSEFL-DADIHSREGPLKVTNIPYQNLLTEKFTQA 218
             E+N + +L +   H R G L V   P+ + L   F +A
Sbjct:   182 EDNRNPYLANNKYHGRGGLLTVQESPWHSPLVAAFVEA 219

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IMP

FB|FBgn0030589 CG9519 [Drosophila melanogaster (taxid:7227)]

 Score = 397 (144.8 bits), Expect = 1.6e-36, P = 1.6e-36
 Identities = 83/201 (41%), Positives = 117/201 (58%)

Query:    20 THNILLESVYQKYLRQQGLEFRENIFLGNKPILSEYDFXXXXXXXXXXXXANRLSENPKW 79
             T N L++ + + Y R Q     EN+  G + I ++YDF            A RLSENP+W
Sbjct:    29 TGNALMDML-EIYRRGQAQLDLENLDEG-QVITTKYDFIVVGAGTAGCALAARLSENPRW 86

Query:    80 KVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYNDQCPCPRGKGL 139
             +VLLLE+G  EN   +IP++AH   L   NW YK E +  +  CL M N++C  PRGK +
Sbjct:    87 RVLLLEAGGPENYAMDIPIVAHLLQLGEINWKYKTEPSNSY--CLAMNNNRCNWPRGKVM 144

Query:   140 GGSSILNYMIYTRGNKKDYDTYEAAGNKGWGYDSVLKYFLKSENNTSEFLDADIHSREGP 199
             GGSS+LNYM+YTRGN++DYD +   GN GW Y+ VL YF K E +     D ++  R GP
Sbjct:   145 GGSSVLNYMMYTRGNRRDYDRWARLGNPGWSYEEVLPYFKKYEGSVVPDADENLVGRNGP 204

Query:   200 LKVTNIPYQNLLTEKFTQAKE 220
             +KV+    +  + + F  A +
Sbjct:   205 VKVSYSETRTRIADAFVGATQ 225

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030587 CG9522 [Drosophila melanogaster (taxid:7227)]

 Score = 386 (140.9 bits), Expect = 2.5e-35, P = 2.5e-35
 Identities = 98/258 (37%), Positives = 138/258 (53%)

Query:     5 LAKLTLIVLICHVHWTHNILLESVYQKYLRQQGLEFRENI-FLGNKPILSEYDFXXXXXX 63
             L +L  ++LI  +H   +  L+      LR+ GL    N+ F  + P    YDF      
Sbjct:     6 LTQLLFLLLIPLIHSQRSSQLDE-----LRRLGLGNVVNVPFFSDVP-QRNYDFIIVGGG 59

Query:    64 XXXXXXANRLSENPKWKVLLLESGEDENIYTNIPLLA-HFNSLTHFNWGYKLEKNEEHPQ 122
                   A RLSENP W V L+E+G  ENI   +PLLA H  S T  NWGY     + H  
Sbjct:    60 AAGCTLAARLSENPNWSVFLIEAGGVENIVHQVPLLAAHLQS-TASNWGYN-STPQRHA- 116

Query:   123 CLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGYDSVLKYFLKSE 182
             C GM +++C  PRGK LGG+S +NYMIY RGN++D+D + AAGN GW YD VL YFL+SE
Sbjct:   117 CRGMPDNKCALPRGKVLGGTSSINYMIYNRGNRRDFDAWAAAGNPGWSYDEVLPYFLRSE 176

Query:   183 NNTSEFLD-ADIHSREGPLKVTNIPYQNLLTEKFTQA-KEGPLKVTNIPYQNLLTEKFTQ 240
             +   + L+ +  H+  GPL V ++ ++  L   + +A +E     T+   ++ L   + Q
Sbjct:   177 HAQLQGLEHSPYHNHSGPLSVEDVRHRTRLAHAYIRAAQEAGHPRTDYNGESQLGVSYVQ 236

Query:   241 AACELGYRIYDYTG-IEP 257
             A    G R   +   IEP
Sbjct:   237 ATTLKGRRHSAFRAYIEP 254

GO:0008812 "choline dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

FB|FBgn0030586 CG12539 [Drosophila melanogaster (taxid:7227)]

 Score = 380 (138.8 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 98/254 (38%), Positives = 135/254 (53%)

Query:    33 LRQQGL-EFRENIFLGNKPI-LSEYDFXXXXXXXXXXXXANRLSENPKWKVLLLESGEDE 90
             L Q GL    E     N P  LS YDF            A RLSENP+  V L+E+G  E
Sbjct:    34 LNQVGLVNLIEQATRPNVPRDLSNYDFIVIGAGAAGCTLAARLSENPQVSVALIEAGGVE 93

Query:    91 NIYTNIPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIY 150
             NI    P++A +   T  NWGYK     +   C GM N++C  PRGK LGG+S +NYMIY
Sbjct:    94 NIAHLTPVVAGYLQQTSSNWGYK--SVPQKLSCHGMNNNECALPRGKILGGTSSINYMIY 151

Query:   151 TRGNKKDYDTYEAAGNKGWGYDSVLKYFLKSENNTSEFLD-ADIHSREGPLKVTNIPYQN 209
              RGN++D+D + AAGN GW YD VL YFL+SE+   + L+ +  H+  GPL V  + +++
Sbjct:   152 NRGNRRDFDAWAAAGNPGWSYDEVLPYFLRSEHAQLQGLEQSPYHNHSGPLSVEYVRFRS 211

Query:   210 LLTEKFTQAK-EGPLKVTNIPYQNLLTEKFTQAACELGYRIYDYTG-IEPATEGFSKLQS 267
              + + F +A  E  L  T+   ++ L   + QA    G R   Y+  I+P  +  S LQ 
Sbjct:   212 QMVDAFVEASVESGLPRTDYNGESQLGVSYVQANTLNGRRHSAYSAYIKPVRDLRSNLQI 271

Query:   268 -TLSKGQRYSANRA 280
              T S+  R   + A
Sbjct:   272 FTFSQVTRILIDEA 285

GO:0004344 "glucose dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030598 CG9503 [Drosophila melanogaster (taxid:7227)]

 Score = 378 (138.1 bits), Expect = 2.2e-34, P = 2.2e-34
 Identities = 77/174 (44%), Positives = 99/174 (56%)

Query:    46 LGNKPILSEYDFXXXXXXXXXXXXANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSL 105
             +G   IL  YDF            ANRL+E   W VLLLE+G DE   T++PL+A +  L
Sbjct:    51 VGGDDILDHYDFIVIGAGSAGAVVANRLTEVENWNVLLLEAGGDETELTDVPLMAGYLQL 110

Query:   106 THFNWGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAG 165
             +  +W YK E +     CL M   +C  PRGK LGGSS+LNYM+Y RG+K DYD +EA G
Sbjct:   111 SKIDWQYKTEPSGT--SCLAMQGGRCNWPRGKVLGGSSVLNYMLYLRGSKHDYDNWEAMG 168

Query:   166 NKGWGYDSVLKYFLKSENNTSEFL-DADIHSREGPLKVTNIPYQNLLTEKFTQA 218
             N  W Y   L YF KSE+NT+++L +   H+  G L V   PY   L   F +A
Sbjct:   169 NPSWSYRDALYYFKKSEDNTNQYLANTPYHATGGYLTVGEAPYHTPLAASFVEA 222

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

FB|FBgn0039415 CG6142 [Drosophila melanogaster (taxid:7227)]

 Score = 369 (135.0 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 83/240 (34%), Positives = 123/240 (51%)

Query:    11 IVLICHVHWTHNILLESVYQKYLRQQGLEFRENIFLGNKPILSEYDFXXXXXXXXXXXXA 70
             +++IC   W   +    +     R     F  N        L EYDF            A
Sbjct:     6 VLIICL--WYIQVTWSQLLVDLARDFETSFLNNRIPDTTRFLPEYDFIIVGAGSAGCVMA 63

Query:    71 NRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYNDQ 130
             NRLSE     VLLLE+G+ E   +++PL A    +T +NWGYK E  E H  C G+    
Sbjct:    64 NRLSEISSASVLLLEAGDQETFISDVPLTAALTQMTRYNWGYKAEPTE-HA-CQGLKGGV 121

Query:   131 CPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGYDSVLKYFLKSEN-NTSEFL 189
             C  P+G+G+GG+S++N+M+YTRG+++DYD + AA N GW YD +L YF KSE     E  
Sbjct:   122 CNWPKGRGVGGTSLINFMLYTRGHRRDYDEWAAANNSGWSYDELLPYFRKSERIGIPELY 181

Query:   190 DADIHSREGPLKVTNIPYQNLLTEKFTQA-KEGPLKVTNIPYQNLLTEKFTQAACELGYR 248
              +  H R G L V    Y++ L + F ++ +E   ++T+   ++L+    +QA    G R
Sbjct:   182 KSPYHGRNGQLDVQYTDYRSQLLKAFLKSGREMGYEITDPNGEHLMGFARSQATIRNGRR 241

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

FB|FBgn0001112 Gld "Glucose dehydrogenase" [Drosophila melanogaster (taxid:7227)]

 Score = 312 (114.9 bits), Expect = 3.9e-27, P = 3.9e-27
 Identities = 73/197 (37%), Positives = 102/197 (51%)

Query:    54 EYDFXXXXXXXXXXXXANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYK 113
             EYDF            A+RLSE P+WKVLL+E+G DE +   IP +  F +    +  Y+
Sbjct:    64 EYDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSM--FLNFIGSDIDYR 121

Query:   114 LEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGYDS 173
                  E   CL     +C  PRGK LGG+S+LN M+Y RGN++DYD + A GN GW Y+ 
Sbjct:   122 YNTEPEPMACLSSMEQRCYWPRGKVLGGTSVLNGMMYVRGNREDYDDWAADGNPGWAYND 181

Query:   174 VLKYFLKSENNTS-EFLDADIHSREGPLKVTNIPYQNLLTEKFTQA-KEGPLKVTNIPYQ 231
             VL +F KSE+N   + +  + H++ G L V   PY   L+    +A +E    V ++  Q
Sbjct:   182 VLPFFKKSEDNLDLDEVGTEYHAKGGLLPVGKFPYNPPLSYAILKAGEELGFSVHDLNGQ 241

Query:   232 NLLTEKFTQAACELGYR 248
             N       Q     G R
Sbjct:   242 NSTGFMIAQMTARNGIR 258

GO:0004344 "glucose dehydrogenase activity" evidence=NAS;TAS

GO:0006006 "glucose metabolic process" evidence=TAS

GO:0008364 "pupal chitin-based cuticle development" evidence=TAS

GO:0042335 "cuticle development" evidence=NAS

GO:0005576 "extracellular region" evidence=NAS

GO:0046693 "sperm storage" evidence=IMP;TAS

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

FB|FBgn0030596 CG12398 [Drosophila melanogaster (taxid:7227)]

 Score = 306 (112.8 bits), Expect = 1.8e-26, P = 1.8e-26
 Identities = 64/167 (38%), Positives = 92/167 (55%)

Query:    55 YDFXXXXXXXXXXXXANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYKL 114
             YDF            A RLSENP+W VLLLE+G DE +  ++P L      + ++W Y  
Sbjct:    57 YDFIVIGGGSAGCVLAARLSENPEWSVLLLEAGGDEPLLIDLPQLYPVFQRSPWDWKYLT 116

Query:   115 EKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGYDSV 174
             E ++ +  CL M + +C  PR K LGG S +N M+Y RGN++DYD + A GN GW YD++
Sbjct:   117 EPSDRY--CLAMEDQRCFWPRAKVLGGCSSINAMMYIRGNRRDYDQWAALGNPGWNYDNI 174

Query:   175 LKYFLKSEN-NTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKE 220
             L YF K E+     F  +  H   GP+ V    + + L + F +A +
Sbjct:   175 LHYFRKLEDMRVPGFEHSPYHGHGGPISVERYRFPSPLLDIFMRAAQ 221

GO:0004344 "glucose dehydrogenase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008812 "choline dehydrogenase activity" evidence=IEA

GO:0006066 "alcohol metabolic process" evidence=IEA

GO:0042600 "chorion" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	284
PRK02106	560	PRK02106, PRK02106, choline dehydrogenase; Validat	2e-47
COG2303	542	COG2303, BetA, Choline dehydrogenase and related f	3e-41
TIGR01810	532	TIGR01810, betA, choline dehydrogenase	5e-37
TIGR03970	487	TIGR03970, Rv0697, dehydrogenase, Rv0697 family	1e-20
pfam00732	218	pfam00732, GMC_oxred_N, GMC oxidoreductase	6e-14
COG1249	454	COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenas	3e-04
COG0579	429	COG0579, COG0579, Predicted dehydrogenase [General	4e-04
PLN02785	587	PLN02785, PLN02785, Protein HOTHEAD	0.001
PTZ00367	567	PTZ00367, PTZ00367, squalene epoxidase; Provisiona	0.002
pfam13450	66	pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-	0.002
TIGR01988	387	TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hyd	0.002
PRK06292	460	PRK06292, PRK06292, dihydrolipoamide dehydrogenase	0.002
COG0665	387	COG0665, DadA, Glycine/D-amino acid oxidases (deam	0.003
COG0644	396	COG0644, FixC, Dehydrogenases (flavoproteins) [Ene	0.003

>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated

 Score =  166 bits (422), Expect = 2e-47
 Identities = 91/236 (38%), Positives = 118/236 (50%), Gaps = 38/236 (16%)

Query: 54  EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG-EDE--NIYTNIPL-LAHFNSLTHFN 109
           EYD++IIG G  G V+ANRLSE+P   VLLLE+G  D   + +  +P  LA       +N
Sbjct: 5   EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYN 64

Query: 110 WGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEA-AGNKG 168
           W Y+ E  E H     M N +  CPRGK LGGSS +N M+Y RGN  DYD +    G +G
Sbjct: 65  WAYETEP-EPH-----MNNRRMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEG 118

Query: 169 WGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNI 228
           W Y   L YF K+E  T +  + D    +GPL VT                      TN 
Sbjct: 119 WSYADCLPYFKKAE--TRDGGEDDYRGGDGPLSVTR-----------------GKPGTNP 159

Query: 229 PYQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
            +Q      F +A  + GY R  D  G     EGF  +  T++ G+R+SA RAYL 
Sbjct: 160 LFQ-----AFVEAGVQAGYPRTDDLNG--YQQEGFGPMDRTVTNGRRWSAARAYLD 208

Length = 560

>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

 Score =  148 bits (376), Expect = 3e-41
 Identities = 78/240 (32%), Positives = 110/240 (45%), Gaps = 40/240 (16%)

Query: 51  ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG-EDENIYTNIP--LLAHFNSLTH 107
           +  EYD+VI+G G  GSV+A RLS+     VL+LE+G  D      +P       N   +
Sbjct: 4   MKMEYDYVIVGSGSAGSVLAARLSD-AGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRY 62

Query: 108 FNWGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAA-GN 166
            +WG++    E  P    +   +   PRGK LGGSS +N M+Y RG+ +D+D +    G 
Sbjct: 63  -DWGFRT---EPEP---HLRGRELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGA 115

Query: 167 KGWGYDSVLKYFLKSENNT--SEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLK 224
            GW YD VL YF ++E+            H   GPL V+     N +   F +A E    
Sbjct: 116 PGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPPRSPNPIARAFIEAGE---- 171

Query: 225 VTNIPYQNLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
                              +LG+    D  G +   EGF     T+  G+R+SA RAYLK
Sbjct: 172 -------------------QLGFPTTPDPNGAD--QEGFGPYCVTICNGRRWSAARAYLK 210

Length = 542

>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase

 Score =  137 bits (346), Expect = 5e-37
 Identities = 83/234 (35%), Positives = 114/234 (48%), Gaps = 39/234 (16%)

Query: 56  DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPL-LAHFNSLTHFNWG 111
           D++IIGGG  GSV+A RLSE+    VL+LE+G  +   ++   +P  LA+      +NW 
Sbjct: 1   DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWI 60

Query: 112 YKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTY-EAAGNKGWG 170
           Y+ E  E H     M N +    RGK LGGSS +N MIY RGN  DY+ + +  G + W 
Sbjct: 61  YETEP-EPH-----MNNRRVGHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWD 114

Query: 171 YDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPY 230
           Y   L Y+ + E            +  G              EK  +  +GP+KV   P 
Sbjct: 115 YADCLPYYKRLE-----------TTFGG--------------EKPYRGHDGPIKVRRGPA 149

Query: 231 QNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
            N L + F +A  E GY +  D  G     EGF  + ST+  G+R SA RAYL 
Sbjct: 150 DNPLFQAFIEAGVEAGYNKTPDVNGFR--QEGFGPMDSTVHNGRRVSAARAYLH 201

Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. Length = 532

>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family

 Score = 90.7 bits (225), Expect = 1e-20
 Identities = 63/235 (26%), Positives = 92/235 (39%), Gaps = 43/235 (18%)

Query: 56  DFVIIGGGVGGSVVANRLSENPKWKVLLLESG----EDENIYTNI--PLLAHFNSLTHFN 109
           D +++GGG  G VVA RLSE+P   V +LE+G    +   +   +   L       +   
Sbjct: 2   DVLVVGGGSAGCVVAARLSEDPSCTVTVLEAGPGYRDPSRLPAQLTDGLRLPIGPASPVV 61

Query: 110 WGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGW 169
           W Y +E  +   +   +        RG+ LGGS  +N   + R    D+D   A    GW
Sbjct: 62  WRYGVELTDGPRRASAIV-------RGRVLGGSGAVNGGYFCRALPADFD---AWPIPGW 111

Query: 170 GYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIP 229
            +D VL +F   E       D D    +GPL                    GP+ V    
Sbjct: 112 SWDDVLPHFRAIET------DLDF---DGPL----------------HGTAGPIPVRRTA 146

Query: 230 YQNLLTEKFTQAACELGY-RIYDYTGIEP-ATEGFSKLQSTLSKGQRYSANRAYL 282
             + ++  F  AA   G+  I D  G  P A  G   +   +  G+R S   AYL
Sbjct: 147 ELDGISAAFVAAALGAGFGWIADLNGSGPDAPTGVGAVPLNVDGGRRVSTAVAYL 201

This model describes a set of dehydrogenases belonging to the glucose-methanol-choline oxidoreductase (GMC oxidoreductase) family. Members of the present family are restricted to Actinobacterial genome contexts containing also members of families TIGR03962 and TIGR03969 (the mycofactocin system), and are proposed to be uniform in function. Length = 487

>gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase

 Score = 68.8 bits (169), Expect = 6e-14
 Identities = 39/155 (25%), Positives = 51/155 (32%), Gaps = 46/155 (29%)

Query: 133 CPRGKGLGGSSILNYMIYTRGNKKDYDT-YEAAGNKGWGYDSVLKYFLKSENNTSEFLDA 191
            P G  +GG S +N+    R      D      G +GWGYD  L Y  K           
Sbjct: 21  LPAGSTVGGGSSVNWSACIRTPAAVLDEWASEFGLEGWGYDDYLPYMDKV---------- 70

Query: 192 DIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIY- 250
                EGPL VT                      T    ++ L +   +AA ELGY +  
Sbjct: 71  -----EGPLGVT----------------------TKGIEESPLNQALLKAAEELGYPVEA 103

Query: 251 ---DYTGIEPATEGFSKLQSTLSKGQRYSANRAYL 282
              +  G      GF  L      G + S  R +L
Sbjct: 104 VPRNSNGCHY--CGFCGLGC--PTGAKQSTARTWL 134

This family of proteins bind FAD as a cofactor. Length = 218

>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
          EYD V+IG G  G V A R ++    KV L+E GE
Sbjct: 4  EYDVVVIGAGPAGYVAAIRAAQLGL-KVALVEKGE 37

Length = 454

>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function prediction only]

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 54 EYDFVIIGGGVGGSVVANRLSE-NPKWKVLLLE 85
          +YD VIIGGG+ G+  A  LSE  P   V LLE
Sbjct: 3  DYDVVIIGGGIMGAATAYELSEYEPDLSVALLE 35

Length = 429

>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 17/108 (15%)

Query: 53  SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGY 112
           S YD++++GGG  G  +A  LS+N  + VLLLE G     + N    A+ + L +F+ G 
Sbjct: 54  SAYDYIVVGGGTAGCPLAATLSQN--FSVLLLERGGVP--FGN----ANVSFLENFHIGL 105

Query: 113 KLEKNEEHPQCL----GMYNDQCPCPRGKGLGGSSILNYMIYTRGNKK 156
                    Q      G+ N      R + LGG + +N   Y+R + +
Sbjct: 106 ADTSPTSASQAFISTDGVIN-----ARARVLGGGTCINAGFYSRASTR 148

Length = 587

>gnl|CDD|240384 PTZ00367, PTZ00367, squalene epoxidase; Provisional

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 15/32 (46%), Positives = 23/32 (71%), Gaps = 1/32 (3%)

Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLE 85
          +YD +I+GG + G V+A  LS+  + KVL+LE
Sbjct: 33 DYDVIIVGGSIAGPVLAKALSKQGR-KVLMLE 63

Length = 567

>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain

 Score = 35.5 bits (83), Expect = 0.002
 Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 59 IIGGGVGGSVVANRLSENPKWKVLLLESGED 89
          I+G G+ G V A  L++     VL+LE  + 
Sbjct: 1  IVGAGLSGLVAAYLLAKR-GKDVLVLEKRDR 30

Length = 66

>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

 Score = 38.7 bits (91), Expect = 0.002
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESG 87
          D VI+GGG  G  +A  L+ +   KV L+E+ 
Sbjct: 1  DIVIVGGGPVGLALALALARSGGLKVALIEAT 32

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4,) and UbiF (which acts at position 5,). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) making it difficult to ascribe a specific activity to each one. Eukaryotes appear to have only a single homolog in this subfamily (COQ6,) which complements UbiH, but also possess a non-orthologous gene, COQ7 which complements UbiF [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 387

>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated

 Score = 38.6 bits (91), Expect = 0.002
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
          +YD ++IG G  G V A R ++  K KV L+E G 
Sbjct: 3  KYDVIVIGAGPAGYVAARRAAKLGK-KVALIEKGP 36

Length = 460

>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
           + D VIIGGG+ G   A  L+E     V +LE+GE
Sbjct: 3  MKMDVVIIGGGIVGLSAAYYLAERG-ADVTVLEAGE 37

Length = 387

>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production and conversion]

 Score = 38.2 bits (89), Expect = 0.003
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
          EYD VI+G G  GS  A RL++     VL+LE G 
Sbjct: 3  EYDVVIVGAGPAGSSAARRLAKA-GLDVLVLEKGS 36

Length = 396

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	284
KOG1238|consensus	623		100.0
PRK02106	560	choline dehydrogenase; Validated	100.0
TIGR01810	532	betA choline dehydrogenase. This enzyme is a membe	100.0
COG2303	542	BetA Choline dehydrogenase and related flavoprotei	100.0
PF00732	296	GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001	100.0
PLN02785	587	Protein HOTHEAD	99.94
TIGR02462	544	pyranose_ox pyranose oxidase. Pyranose oxidase (al	99.35
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	98.11
COG2081	408	Predicted flavoproteins [General function predicti	98.09
KOG1298|consensus	509		98.01
PRK10157	428	putative oxidoreductase FixC; Provisional	97.98
PRK10015	429	oxidoreductase; Provisional	97.96
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	97.87
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	97.83
PLN02985	514	squalene monooxygenase	97.8
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	97.79
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	97.78
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	97.77
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	97.77
TIGR02023	388	BchP-ChlP geranylgeranyl reductase. This model rep	97.76
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	97.75
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	97.74
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	97.72
PRK08274	466	tricarballylate dehydrogenase; Validated	97.72
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	97.7
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	97.69
TIGR01373	407	soxB sarcosine oxidase, beta subunit family, heter	97.68
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	97.68
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.67
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	97.67
PRK08020	391	ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin	97.66
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	97.65
PRK13369	502	glycerol-3-phosphate dehydrogenase; Provisional	97.64
PF05834	374	Lycopene_cycl: Lycopene cyclase protein; InterPro:	97.64
PLN02463	447	lycopene beta cyclase	97.63
PRK12266	508	glpD glycerol-3-phosphate dehydrogenase; Reviewed	97.63
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	97.62
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	97.6
PRK09126	392	hypothetical protein; Provisional	97.6
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	97.6
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.59
PRK08013	400	oxidoreductase; Provisional	97.59
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.58
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	97.58
PRK06116	450	glutathione reductase; Validated	97.58
PRK07045	388	putative monooxygenase; Reviewed	97.58
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	97.57
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.56
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	97.55
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	97.55
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	97.55
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	97.55
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	97.55
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	97.54
PRK11728	393	hydroxyglutarate oxidase; Provisional	97.54
PLN02661	357	Putative thiazole synthesis	97.53
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	97.53
PRK06185	407	hypothetical protein; Provisional	97.52
TIGR03329	460	Phn_aa_oxid putative aminophosphonate oxidoreducta	97.5
PRK06370	463	mercuric reductase; Validated	97.5
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	97.48
PRK11101	546	glpA sn-glycerol-3-phosphate dehydrogenase subunit	97.48
PRK07121	492	hypothetical protein; Validated	97.48
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	97.47
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	97.47
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	97.47
PRK05192	618	tRNA uridine 5-carboxymethylaminomethyl modificati	97.47
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	97.46
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	97.46
KOG0029|consensus	501		97.45
PRK11445	351	putative oxidoreductase; Provisional	97.45
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	97.45
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.44
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	97.44
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	97.43
PRK07804	541	L-aspartate oxidase; Provisional	97.43
PLN02697	529	lycopene epsilon cyclase	97.43
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	97.42
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	97.42
PLN02464	627	glycerol-3-phosphate dehydrogenase	97.42
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	97.42
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	97.41
PRK08244	493	hypothetical protein; Provisional	97.4
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	97.4
TIGR01789	370	lycopene_cycl lycopene cyclase. This model represe	97.4
TIGR01320	483	mal_quin_oxido malate:quinone-oxidoreductase. This	97.4
TIGR01989	437	COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T	97.4
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	97.39
PRK05257	494	malate:quinone oxidoreductase; Validated	97.38
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	97.37
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	97.37
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	97.36
PRK06184	502	hypothetical protein; Provisional	97.36
PTZ00058	561	glutathione reductase; Provisional	97.36
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	97.35
TIGR02053	463	MerA mercuric reductase. This model represents the	97.35
PLN02576	496	protoporphyrinogen oxidase	97.35
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	97.34
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	97.33
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	97.33
PTZ00139	617	Succinate dehydrogenase [ubiquinone] flavoprotein	97.33
COG0654	387	UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and	97.32
PRK07190	487	hypothetical protein; Provisional	97.32
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	97.32
PLN02268	435	probable polyamine oxidase	97.32
PRK07208	479	hypothetical protein; Provisional	97.3
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	97.3
PRK13748	561	putative mercuric reductase; Provisional	97.29
PRK06996	398	hypothetical protein; Provisional	97.29
PRK06834	488	hypothetical protein; Provisional	97.28
PRK06847	375	hypothetical protein; Provisional	97.28
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	97.27
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	97.27
COG0492	305	TrxB Thioredoxin reductase [Posttranslational modi	97.27
PRK14694	468	putative mercuric reductase; Provisional	97.26
PTZ00383	497	malate:quinone oxidoreductase; Provisional	97.26
PRK13339	497	malate:quinone oxidoreductase; Reviewed	97.25
PRK06753	373	hypothetical protein; Provisional	97.25
PRK07588	391	hypothetical protein; Provisional	97.24
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	97.24
PRK11883	451	protoporphyrinogen oxidase; Reviewed	97.23
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	97.23
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	97.22
PTZ00367	567	squalene epoxidase; Provisional	97.21
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	97.2
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	97.2
PRK12842	574	putative succinate dehydrogenase; Reviewed	97.19
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.18
PRK08163	396	salicylate hydroxylase; Provisional	97.18
PRK07236	386	hypothetical protein; Provisional	97.17
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	97.17
PRK08958	588	sdhA succinate dehydrogenase flavoprotein subunit;	97.17
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	97.16
PRK09078	598	sdhA succinate dehydrogenase flavoprotein subunit;	97.16
PRK07057	591	sdhA succinate dehydrogenase flavoprotein subunit;	97.16
PRK06175	433	L-aspartate oxidase; Provisional	97.15
PRK06854	608	adenylylsulfate reductase subunit alpha; Validated	97.15
PRK07233	434	hypothetical protein; Provisional	97.13
PRK06126	545	hypothetical protein; Provisional	97.13
PF07992	201	Pyr_redox_2: Pyridine nucleotide-disulphide oxidor	97.13
PTZ00052	499	thioredoxin reductase; Provisional	97.12
KOG2415|consensus	621		97.11
PRK08294	634	phenol 2-monooxygenase; Provisional	97.11
PRK08132	547	FAD-dependent oxidoreductase; Provisional	97.11
PLN02507	499	glutathione reductase	97.11
PRK08275	554	putative oxidoreductase; Provisional	97.11
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	97.11
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	97.1
PRK08401	466	L-aspartate oxidase; Provisional	97.1
PLN00128	635	Succinate dehydrogenase [ubiquinone] flavoprotein	97.09
TIGR01423	486	trypano_reduc trypanothione-disulfide reductase. T	97.09
PRK05945	575	sdhA succinate dehydrogenase flavoprotein subunit;	97.07
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.05
PRK07573	640	sdhA succinate dehydrogenase flavoprotein subunit;	97.04
PRK07538	413	hypothetical protein; Provisional	97.04
PLN02676	487	polyamine oxidase	97.04
PRK08626	657	fumarate reductase flavoprotein subunit; Provision	97.04
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	97.04
PRK10262	321	thioredoxin reductase; Provisional	97.04
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	97.03
PRK06263	543	sdhA succinate dehydrogenase flavoprotein subunit;	97.03
PRK06069	577	sdhA succinate dehydrogenase flavoprotein subunit;	97.02
PRK07395	553	L-aspartate oxidase; Provisional	97.02
PRK05329	422	anaerobic glycerol-3-phosphate dehydrogenase subun	97.01
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	97.01
PLN02546	558	glutathione reductase	97.01
COG0579	429	Predicted dehydrogenase [General function predicti	97.0
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	96.99
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	96.97
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	96.95
PRK05868	372	hypothetical protein; Validated	96.95
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	96.95
COG3573	552	Predicted oxidoreductase [General function predict	96.94
PRK08205	583	sdhA succinate dehydrogenase flavoprotein subunit;	96.94
PRK12839	572	hypothetical protein; Provisional	96.92
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	96.92
PLN02815	594	L-aspartate oxidase	96.91
TIGR00551	488	nadB L-aspartate oxidase. L-aspartate oxidase is t	96.9
PRK12416	463	protoporphyrinogen oxidase; Provisional	96.9
PTZ00153	659	lipoamide dehydrogenase; Provisional	96.89
PRK09077	536	L-aspartate oxidase; Provisional	96.89
PRK14727	479	putative mercuric reductase; Provisional	96.86
PRK09231	582	fumarate reductase flavoprotein subunit; Validated	96.85
PRK05335	436	tRNA (uracil-5-)-methyltransferase Gid; Reviewed	96.84
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	96.83
PLN02568	539	polyamine oxidase	96.82
TIGR01438	484	TGR thioredoxin and glutathione reductase selenopr	96.81
PRK08071	510	L-aspartate oxidase; Provisional	96.8
TIGR02061	614	aprA adenosine phosphosulphate reductase, alpha su	96.79
TIGR01176	580	fum_red_Fp fumarate reductase, flavoprotein subuni	96.76
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	96.76
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	96.73
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	96.71
PRK06475	400	salicylate hydroxylase; Provisional	96.71
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	96.7
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	96.66
COG0578	532	GlpA Glycerol-3-phosphate dehydrogenase [Energy pr	96.66
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	96.64
KOG3855|consensus	481		96.64
PRK12843	578	putative FAD-binding dehydrogenase; Reviewed	96.64
TIGR03378	419	glycerol3P_GlpB glycerol-3-phosphate dehydrogenase	96.58
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	96.54
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	96.52
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	96.51
PRK12831	464	putative oxidoreductase; Provisional	96.5
COG1053	562	SdhA Succinate dehydrogenase/fumarate reductase, f	96.49
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	96.48
PF01134	392	GIDA: Glucose inhibited division protein A; InterP	96.47
PRK07512	513	L-aspartate oxidase; Provisional	96.45
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	96.45
TIGR00137	433	gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo	96.45
PLN02612	567	phytoene desaturase	96.44
PRK07846	451	mycothione reductase; Reviewed	96.41
COG3349	485	Uncharacterized conserved protein [Function unknow	96.41
KOG2614|consensus	420		96.4
KOG2665|consensus	453		96.37
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	96.36
KOG2820|consensus	399		96.35
TIGR00275	400	flavoprotein, HI0933 family. The model when search	96.34
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	96.32
TIGR00136	617	gidA glucose-inhibited division protein A. GidA, t	96.3
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	96.25
KOG1399|consensus	448		96.24
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	96.24
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	96.23
PLN02529	738	lysine-specific histone demethylase 1	96.18
PRK13977	576	myosin-cross-reactive antigen; Provisional	96.15
KOG0685|consensus	498		96.15
PRK12770	352	putative glutamate synthase subunit beta; Provisio	96.14
TIGR01811	603	sdhA_Bsu succinate dehydrogenase or fumarate reduc	96.14
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	96.13
PLN02328	808	lysine-specific histone demethylase 1 homolog	96.08
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	96.07
PF04820	454	Trp_halogenase: Tryptophan halogenase; InterPro: I	96.06
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	96.06
PRK12779	944	putative bifunctional glutamate synthase subunit b	96.0
PLN02852	491	ferredoxin-NADP+ reductase	95.99
COG3075	421	GlpB Anaerobic glycerol-3-phosphate dehydrogenase	95.93
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	95.93
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	95.91
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	95.84
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	95.8
PRK07845	466	flavoprotein disulfide reductase; Reviewed	95.79
KOG2960|consensus	328		95.73
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	95.73
KOG2853|consensus	509		95.63
PLN02487	569	zeta-carotene desaturase	95.57
PRK12814	652	putative NADPH-dependent glutamate synthase small	95.51
PLN03000	881	amine oxidase	95.37
KOG4716|consensus	503		95.3
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	95.29
PTZ00188	506	adrenodoxin reductase; Provisional	95.27
PRK06567	1028	putative bifunctional glutamate synthase subunit b	95.27
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	95.24
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	95.17
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	95.15
PF06039	488	Mqo: Malate:quinone oxidoreductase (Mqo); InterPro	95.07
COG0029	518	NadB Aspartate oxidase [Coenzyme metabolism]	95.06
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	94.96
PLN02976	1713	amine oxidase	94.86
COG0445	621	GidA Flavin-dependent tRNA uridine 5-carboxymethyl	94.85
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	94.79
PRK09897	534	hypothetical protein; Provisional	94.79
KOG0042|consensus	680		94.71
COG2907	447	Predicted NAD/FAD-binding protein [General functio	94.65
KOG0405|consensus	478		94.61
PRK09564	444	coenzyme A disulfide reductase; Reviewed	94.53
PRK13984	604	putative oxidoreductase; Provisional	94.48
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	94.36
PRK13512	438	coenzyme A disulfide reductase; Provisional	94.32
KOG1335|consensus	506		94.27
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	94.16
KOG1276|consensus	491		94.14
PF13434	341	K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi	94.14
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	94.06
PF13454	156	NAD_binding_9: FAD-NAD(P)-binding	93.89
TIGR03169	364	Nterm_to_SelD pyridine nucleotide-disulfide oxidor	93.64
KOG1800|consensus	468		93.64
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	93.25
KOG4254|consensus	561		93.11
KOG3851|consensus	446		93.09
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	92.85
KOG4405|consensus	547		92.7
COG2509	486	Uncharacterized FAD-dependent dehydrogenases [Gene	92.53
KOG2311|consensus	679		92.2
COG1206	439	Gid NAD(FAD)-utilizing enzyme possibly involved in	91.89
COG0569	225	TrkA K+ transport systems, NAD-binding component [	91.38
PF02558	151	ApbA: Ketopantoate reductase PanE/ApbA; InterPro:	91.22
COG0446	415	HcaD Uncharacterized NAD(FAD)-dependent dehydrogen	90.75
KOG2755|consensus	334		90.43
COG4529	474	Uncharacterized protein conserved in bacteria [Fun	90.25
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	89.91
KOG2844|consensus	856		89.63
COG3634	520	AhpF Alkyl hydroperoxide reductase, large subunit	89.61
PRK09754	396	phenylpropionate dioxygenase ferredoxin reductase	89.46
KOG2404|consensus	477		89.42
PRK04965	377	NADH:flavorubredoxin oxidoreductase; Provisional	89.15
KOG1439|consensus	440		88.93
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	88.93
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	88.34
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	88.18
PF01210	157	NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate	88.07
COG1252	405	Ndh NADH dehydrogenase, FAD-containing subunit [En	87.53
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	87.05
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	86.96
PRK10669	558	putative cation:proton antiport protein; Provision	86.78
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	86.74
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	86.67
PRK14989	847	nitrite reductase subunit NirD; Provisional	86.52
PF02737	180	3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind	86.43
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	86.4
PRK07846	451	mycothione reductase; Reviewed	86.37
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	85.97
TIGR02053	463	MerA mercuric reductase. This model represents the	85.93
TIGR03385	427	CoA_CoA_reduc CoA-disulfide reductase. Members of	85.89
PRK05708	305	2-dehydropantoate 2-reductase; Provisional	85.82
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	85.63
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	85.43
PRK13512	438	coenzyme A disulfide reductase; Provisional	85.38
KOG0399|consensus	2142		85.32
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	85.23
PRK06370	463	mercuric reductase; Validated	85.13
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	85.02
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	85.02
PRK06249	313	2-dehydropantoate 2-reductase; Provisional	84.83
KOG2495|consensus	491		83.95
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	83.76
PRK06522	304	2-dehydropantoate 2-reductase; Reviewed	83.32
PRK12921	305	2-dehydropantoate 2-reductase; Provisional	83.13
TIGR03452	452	mycothione_red mycothione reductase. Mycothiol, a	83.08
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	82.55
KOG0404|consensus	322		82.52
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	82.41
PRK09564	444	coenzyme A disulfide reductase; Reviewed	82.32
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	82.23
PRK06129	308	3-hydroxyacyl-CoA dehydrogenase; Validated	82.14
PTZ00318	424	NADH dehydrogenase-like protein; Provisional	82.12
COG1249	454	Lpd Pyruvate/2-oxoglutarate dehydrogenase complex,	81.94
PRK07845	466	flavoprotein disulfide reductase; Reviewed	81.89
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	81.62
PRK06719	157	precorrin-2 dehydrogenase; Validated	81.54
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	81.5
PRK06116	450	glutathione reductase; Validated	81.42
COG3486	436	IucD Lysine/ornithine N-monooxygenase [Secondary m	81.14
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	81.07
PRK01438	480	murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn	80.97
PRK15317	517	alkyl hydroperoxide reductase subunit F; Provision	80.89
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	80.7
PRK10262	321	thioredoxin reductase; Provisional	80.64
PLN02507	499	glutathione reductase	80.6
PRK08293	287	3-hydroxybutyryl-CoA dehydrogenase; Validated	80.49
PF13241	103	NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_	80.31
TIGR02374	785	nitri_red_nirB nitrite reductase [NAD(P)H], large	80.17

>KOG1238|consensus

Probab=100.00  E-value=1.5e-47  Score=375.89  Aligned_cols=207  Identities=46%  Similarity=0.805  Sum_probs=193.6

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCccccccccccccccccCCcccccccccCCCCCccccCCCCCC
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYNDQ  130 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~~  130 (284)
                      ...+|||||||+|.|||++|+||+|++.++|||||||++++...++|.+...++.+.+||.|.++|++  .+|+++.++.
T Consensus        54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y~t~Ps~--~ac~~m~~~~  131 (623)
T KOG1238|consen   54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSYHTEPSQ--HACLAMSEDR  131 (623)
T ss_pred             cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhccccccccCcCccCh--hhhhhhcCCc
Confidence            56789999999999999999999999999999999999998888899777778889999999999999  9999999999


Q ss_pred             cccCcccccCCccccccccccCCChhhHHHHHhcCCCCCChhhHHHHHHHHhhccCCC-CCCCCCCcccCceeecCCcch
Q psy4112         131 CPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGYDSVLKYFLKSENNTSEF-LDADIHSREGPLKVTNIPYQN  209 (284)
Q Consensus       131 ~~~~rGk~lGGsS~iN~~~~~R~~~~D~d~W~~~G~~gW~~~~l~pyf~k~E~~~~~~-~~~~~hG~~Gpl~v~~~~~~~  209 (284)
                      |.|+|||+|||||+||+|+|.|+++.|||+|++.|++||+|++++|||+|+|....+. ...++|+..||+.++...+  
T Consensus       132 c~wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~gnpgW~y~~vl~yf~k~E~~~~~~~~~~~y~~~~g~~~ve~~~~--  209 (623)
T KOG1238|consen  132 CYWPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAEGNPGWSYDEVLPYFKKSEDKVVPDPELTPYHGAGGPLLVEAGVY--  209 (623)
T ss_pred             eecCccceecccccccceEEecCCccchHHHHHhcCCCCCHHHHHHHHHHHhhccCCCcccCcccccCCcceeccccc--
Confidence            9999999999999999999999999999999999999999999999999999986654 3446999999999998777  


Q ss_pred             hhhhhhhcccCCCCcccCCcccchHHHHHHHHHHHcCCCccCCCCCCCCCcccccccccccCCcccchhhhccCC
Q psy4112         210 LLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYLKS  284 (284)
Q Consensus       210 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~A~~~lG~~~~D~n~~~~~~~G~~~~~~ti~~G~R~sa~~ayL~~  284 (284)
                                           .+++...|.++..++|....|+||..+  .|+...+.++++|.|+|++++||++
T Consensus       210 ---------------------~~~~~~~~~~ag~e~G~~~~D~nG~~~--tg~~~l~~t~~~g~R~s~~~a~l~~  261 (623)
T KOG1238|consen  210 ---------------------PNNLFTAFHRAGTEIGGSIFDRNGERH--TGASLLQYTIRNGIRVSLAKAYLKP  261 (623)
T ss_pred             ---------------------cCchhhHhHHhHHhcCCCccCCCCccc--cchhhhhccccCCEEEEehhhhhhh
Confidence                                 678999999999999988889999999  9999999999999999999999974

>PRK02106 choline dehydrogenase; Validated

Probab=100.00  E-value=1.9e-37  Score=308.86  Aligned_cols=200  Identities=43%  Similarity=0.774  Sum_probs=168.9

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc---cccccccccccc-ccCCcccccccccCCCCCccccCCC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPLLAHF-NSLTHFNWGYKLEKNEEHPQCLGMY  127 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~---~~~~~~p~~~~~-~~~~~~~w~~~~~p~~~~~~~~~~~  127 (284)
                      ..+|||||||+|++|+++|.||+|+++++|||||+|+..   ....+.|..... .....++|.|.+.||+      ...
T Consensus         3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~------~~~   76 (560)
T PRK02106          3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEP------HMN   76 (560)
T ss_pred             CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCC------CCC
Confidence            456999999999999999999999779999999999754   233445543322 2235679999999987      566


Q ss_pred             CCCcccCcccccCCccccccccccCCChhhHHHHHhc-CCCCCChhhHHHHHHHHhhccCCCCCCCCCCcccCceeecC-
Q psy4112         128 NDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAA-GNKGWGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNI-  205 (284)
Q Consensus       128 ~~~~~~~rGk~lGGsS~iN~~~~~R~~~~D~d~W~~~-G~~gW~~~~l~pyf~k~E~~~~~~~~~~~hG~~Gpl~v~~~-  205 (284)
                      ++.+.+++||+|||||+||+|+|+|+++.|||.|+.+ |+++|+|++|+|||+|+|++...  ..+.||.+||++++.+ 
T Consensus        77 ~~~~~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w~~~~g~~~Ws~~~l~py~~k~E~~~~~--~~~~~g~~gp~~~~~~~  154 (560)
T PRK02106         77 NRRMECPRGKVLGGSSSINGMVYIRGNAMDYDNWAELPGLEGWSYADCLPYFKKAETRDGG--EDDYRGGDGPLSVTRGK  154 (560)
T ss_pred             CCeeecccccccCCCCCccceEEecCCHHHHHHHHhhcCCCCCCHHHHHHHHHHhhccCCC--CccccCCCCCEEEeCCC
Confidence            7788999999999999999999999999999999988 89999999999999999998742  3457999999998754 


Q ss_pred             CcchhhhhhhhcccCCCCcccCCcccchHHHHHHHHHHHcCCCcc-CCCCCCCCCcccccccccccCCcccchhhhccCC
Q psy4112         206 PYQNLLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLSKGQRYSANRAYLKS  284 (284)
Q Consensus       206 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~A~~~lG~~~~-D~n~~~~~~~G~~~~~~ti~~G~R~sa~~ayL~~  284 (284)
                      .+                       .++..+.|.++++++|++.. |+|++..  .|++.++.+|.+|.|+++..+||.+
T Consensus       155 ~~-----------------------~~~~~~~~~~a~~~lG~~~~~~~~~~~~--~g~~~~~~~~~~g~R~s~~~~~l~~  209 (560)
T PRK02106        155 PG-----------------------TNPLFQAFVEAGVQAGYPRTDDLNGYQQ--EGFGPMDRTVTNGRRWSAARAYLDP  209 (560)
T ss_pred             CC-----------------------CCHHHHHHHHHHHHcCCCcCCCCCCCCC--ceeEEEeeecCCCEEEChHHHhhcc
Confidence            22                       56788999999999999986 8888776  8988888889999999999999863

>TIGR01810 betA choline dehydrogenase

Probab=100.00  E-value=2.5e-37  Score=306.23  Aligned_cols=195  Identities=39%  Similarity=0.685  Sum_probs=166.1

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCccc---ccccccccccc-ccCCcccccccccCCCCCccccCCCCCCc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDEN---IYTNIPLLAHF-NSLTHFNWGYKLEKNEEHPQCLGMYNDQC  131 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~---~~~~~p~~~~~-~~~~~~~w~~~~~p~~~~~~~~~~~~~~~  131 (284)
                      ||||||+|++|+++|.||+|+++.+|||||+|+...   ...+.|..... ...+.++|.|.++||.      .+.++.+
T Consensus         1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~------~~~~~~~   74 (532)
T TIGR01810         1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEP------HMNNRRV   74 (532)
T ss_pred             CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCC------CCCCceE
Confidence            899999999999999999997558999999998642   33445543222 2235578999999988      6677889


Q ss_pred             ccCcccccCCccccccccccCCChhhHHHHHh-cCCCCCChhhHHHHHHHHhhccCCCCCCCCCCcccCceeecCCcchh
Q psy4112         132 PCPRGKGLGGSSILNYMIYTRGNKKDYDTYEA-AGNKGWGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNL  210 (284)
Q Consensus       132 ~~~rGk~lGGsS~iN~~~~~R~~~~D~d~W~~-~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~hG~~Gpl~v~~~~~~~~  210 (284)
                      .+++||+|||||+||+|+|+|+++.|||.|++ .|+++|+|++|+|||+|+|++.+.  ..+.||.+||+.+..++.   
T Consensus        75 ~~~~g~~lGGss~in~~~~~R~~~~d~~~w~~~~g~~~W~~~~l~py~~~~E~~~~~--~~~~~g~~G~~~v~~~~~---  149 (532)
T TIGR01810        75 GHARGKVLGGSSSINGMIYQRGNPMDYEKWAKPEGMESWDYADCLPYYKRLETTFGG--EKPYRGHDGPIKVRRGPA---  149 (532)
T ss_pred             eeecccccCCCCCEeeeEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhccCCC--CcccCCCCCCEEEecCCC---
Confidence            99999999999999999999999999999998 589999999999999999998764  246899999999886555   


Q ss_pred             hhhhhhcccCCCCcccCCcccchHHHHHHHHHHHcCCCcc-CCCCCCCCCcccccccccccCCcccchhhhccC
Q psy4112         211 LTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK  283 (284)
Q Consensus       211 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~A~~~lG~~~~-D~n~~~~~~~G~~~~~~ti~~G~R~sa~~ayL~  283 (284)
                                          .++..+.|.++++++|++.. |+|+...  .|++.++.+|++|+|+|+..+||.
T Consensus       150 --------------------~~~~~~~~~~a~~~~G~~~~~~~~~~~~--~g~~~~~~~~~~g~r~s~~~~~l~  201 (532)
T TIGR01810       150 --------------------DNPLFQAFIEAGVEAGYNKTPDVNGFRQ--EGFGPMDSTVHNGRRVSAARAYLH  201 (532)
T ss_pred             --------------------CCHHHHHHHHHHHHcCCCccCCCCCCCc--cceEEEEEEcCCCEEEcHHHHHhh
Confidence                                56788999999999999986 7887766  788887788899999999999986

This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.

>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]

Probab=100.00  E-value=1.1e-36  Score=302.23  Aligned_cols=202  Identities=37%  Similarity=0.654  Sum_probs=176.7

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcccc-ccccccccccccCC-cccccccccCCCCCccccCCCC
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENI-YTNIPLLAHFNSLT-HFNWGYKLEKNEEHPQCLGMYN  128 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~~-~~~~p~~~~~~~~~-~~~w~~~~~p~~~~~~~~~~~~  128 (284)
                      ...+||+||||+|.+||++|.||+ +++.+|||||+|+.... ..++|......... .++|.|.++|+.      ++.+
T Consensus         4 ~~~~~D~vIVGsG~aG~~lA~rLs-~~g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~------~~~~   76 (542)
T COG2303           4 MKMEYDYVIVGSGSAGSVLAARLS-DAGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEP------HLRG   76 (542)
T ss_pred             ccCCCCEEEECCCchhHHHHHHhc-CCCCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCccc------CCCC
Confidence            356799999999999999999999 58999999999986543 56677665555443 789999999988      7888


Q ss_pred             CCcccCcccccCCccccccccccCCChhhHHHHHhc-CCCCCChhhHHHHHHHHhhccCCCCC--CCCCCcccCceeecC
Q psy4112         129 DQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAA-GNKGWGYDSVLKYFLKSENNTSEFLD--ADIHSREGPLKVTNI  205 (284)
Q Consensus       129 ~~~~~~rGk~lGGsS~iN~~~~~R~~~~D~d~W~~~-G~~gW~~~~l~pyf~k~E~~~~~~~~--~~~hG~~Gpl~v~~~  205 (284)
                      +.+.++|||+|||||+||+|+|+|+++.|||.|+.. |+++|.|++|+|||+|+|++.+...+  ...||..||+.+...
T Consensus        77 r~~~~~rgk~lGGsS~ing~~~~R~~~~Df~~w~~~~G~~~W~y~d~lPyf~~aE~~~~~~g~~~~~~~g~~gp~~~~~~  156 (542)
T COG2303          77 RELAWPRGKVLGGSSSINGMVYVRGHPEDFDAWAQESGAPGWPYDDVLPYFKRAEDLLGVGGQDLRTWHGGGGPLPVSPP  156 (542)
T ss_pred             ccccccccCcccchhhhccceeecCCHHHHHHHHhhcCCCCCCccccHHHHHHHHhhcCCCCCCCCCCcCCCCCccccCC
Confidence            999999999999999999999999999999999886 88999999999999999998776422  347999999998766


Q ss_pred             CcchhhhhhhhcccCCCCcccCCcccchHHHHHHHHHHHcCCCcc-CCCCCCCCCcccccccccccCCcccchhhhccCC
Q psy4112         206 PYQNLLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLSKGQRYSANRAYLKS  284 (284)
Q Consensus       206 ~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~A~~~lG~~~~-D~n~~~~~~~G~~~~~~ti~~G~R~sa~~ayL~~  284 (284)
                      ..                       ..++...|.++++++|++.. |+|+...  .|++.++.++.+|.|+|+..+||.+
T Consensus       157 ~~-----------------------~~~~~~a~~~a~~~~G~~~~~~~~~~~~--~g~g~~~~~~~~g~r~sa~~a~l~~  211 (542)
T COG2303         157 RS-----------------------PNPIARAFIEAGEQLGFPTTPDPNGADQ--EGFGPYCVTICNGRRWSAARAYLKP  211 (542)
T ss_pred             CC-----------------------chHHHHHHHHHHHHcCCCcCcccccCCC--CCcccceeeccCCeEeechhhcchh
Confidence            33                       57899999999999999997 7999988  8999888888899999999999864

>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]

Probab=100.00  E-value=1.1e-36  Score=278.98  Aligned_cols=196  Identities=36%  Similarity=0.619  Sum_probs=157.6

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCccccccccccc-cccccCCcccccccccCCCCCccccCCCCCCccc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLL-AHFNSLTHFNWGYKLEKNEEHPQCLGMYNDQCPC  133 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~~~~~~p~~-~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~~~~~  133 (284)
                      |||||||||++|+++|.||+++++.+|||||+|++.......+.. ........++|.+.+.|+.      .++++.+.+
T Consensus         1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~   74 (296)
T PF00732_consen    1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQP------FLNGRTINW   74 (296)
T ss_dssp             EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEE------CTTTTSEEE
T ss_pred             CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCccccccccccccc------ccccceeee
Confidence            899999999999999999999766899999999987543322222 1222345688888888876      677788889


Q ss_pred             CcccccCCccccccccccCCChhhHHHHHhc-CCCCCChhhHHHHHHHHhhccCCCCCCCCCCcccCceee-cCCcchhh
Q psy4112         134 PRGKGLGGSSILNYMIYTRGNKKDYDTYEAA-GNKGWGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVT-NIPYQNLL  211 (284)
Q Consensus       134 ~rGk~lGGsS~iN~~~~~R~~~~D~d~W~~~-G~~gW~~~~l~pyf~k~E~~~~~~~~~~~hG~~Gpl~v~-~~~~~~~~  211 (284)
                      ++|++|||||+||+|+|+|+++.||+.|+.. |.++|+|++|+|||+++|+++.+.  ...|+.+++++++ .+.+    
T Consensus        75 ~~G~~lGGsS~in~~~~~R~~~~df~~w~~~~g~~~w~~~~l~~~~~~~e~~~~~~--~~~~g~~~~~~v~~~~~~----  148 (296)
T PF00732_consen   75 PRGKGLGGSSAINGGVYFRPSPSDFDEWAREFGADGWSWDDLEPYYDKAETFLGPS--SDLHGVDGPLPVSSSPPY----  148 (296)
T ss_dssp             EEB-STTGGGGTS--BE-B--HHHHHHHHHTTTCTTGSHHHHHHHHHHHEEEHTTB--GGGSCBSSSEEEHHHCSC----
T ss_pred             ecceecCCcccccccccccCCcccchhhhhcccccccchhhHHHHHHHHHhhcccc--ccccccccccccccccCC----
Confidence            9999999999999999999999999999987 888999999999999999998874  6789999999983 3332    


Q ss_pred             hhhhhcccCCCCcccCCcccchHHHHHHHHHHHcCCCcc-CCCCCCCCCcccccccccccCCcccchhhhccC
Q psy4112         212 TEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK  283 (284)
Q Consensus       212 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~A~~~lG~~~~-D~n~~~~~~~G~~~~~~ti~~G~R~sa~~ayL~  283 (284)
                                         ..+..+.|.++++++|++.. |++++..  +|+|.....|.+|+|+|+..+||.
T Consensus       149 -------------------~~~~~~~~~~a~~~~G~~~~~~~~~~~~--~g~~~~~~~~~~g~r~s~~~~~L~  200 (296)
T PF00732_consen  149 -------------------PSPMNQALMDAAEELGIPVPQDFNGCDP--CGFCMTGFNCPNGARSSAATTYLP  200 (296)
T ss_dssp             -------------------HCTHHHHHHHHHHHTTHHBCSCTTSSTC--SEEEECEECECTTCBBHHHHHHHH
T ss_pred             -------------------CCHHHHHHHHHHHHcCCccccccccccc--cccccccccccchhceehhhcccc
Confidence                               56778999999999999954 8888877  999987778999999999999984

These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....

>PLN02785 Protein HOTHEAD

Probab=99.94  E-value=6.4e-27  Score=234.33  Aligned_cols=170  Identities=23%  Similarity=0.329  Sum_probs=125.9

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCccccccccccccccccCCcccccccccCCCCCccccCCCCCCc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYNDQC  131 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~~~  131 (284)
                      ...|||||||+|++||++|.+|++  +.+|||||+|++......+.... .+....++|.|.+.||.      ...++.+
T Consensus        53 ~~~yD~IIVG~G~aG~~lA~~Ls~--~~~VLllE~G~~~~~~~~~~~~~-~~~~~~~d~~~~~~~q~------~~~~~~~  123 (587)
T PLN02785         53 DSAYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGGVPFGNANVSFLE-NFHIGLADTSPTSASQA------FISTDGV  123 (587)
T ss_pred             cccCCEEEECcCHHHHHHHHHHhc--CCcEEEEecCCCCCCCchhhhHH-hhCCcccccCCcccccc------ccCCCce
Confidence            557999999999999999999999  58999999998642111221111 12234578999998887      5567888


Q ss_pred             ccCcccccCCccccccccccCCChhhHHHHHhcCCCCCChhhHHHHHHHHhhccCCCCCCCCCCcccCceeecCCcchhh
Q psy4112         132 PCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLL  211 (284)
Q Consensus       132 ~~~rGk~lGGsS~iN~~~~~R~~~~D~d~W~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~hG~~Gpl~v~~~~~~~~~  211 (284)
                      .++|||+|||||+||+|+|.|++++||+.      .||+|++++|||+++|+....                 .+.    
T Consensus       124 ~~~rGr~LGGsS~iN~~~y~Rg~~~d~~~------~GW~~~~~~~~~~~~e~~~~~-----------------~~~----  176 (587)
T PLN02785        124 INARARVLGGGTCINAGFYSRASTRFIQK------AGWDAKLVNESYPWVERQIVH-----------------WPK----  176 (587)
T ss_pred             eccccceecchhhhcCeEEEeCCHHHhcc------CCCCcccccchHHHHhccccc-----------------CCC----
Confidence            99999999999999999999999999963      689999999999999975210                 011    


Q ss_pred             hhhhhcccCCCCcccCCcccchHHHHHHHHHHHcCCCccCCCCCCC-CCcccccccccc--cCCcccchhh
Q psy4112         212 TEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIYDYTGIEP-ATEGFSKLQSTL--SKGQRYSANR  279 (284)
Q Consensus       212 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~A~~~lG~~~~D~n~~~~-~~~G~~~~~~ti--~~G~R~sa~~  279 (284)
                                         ..+....|++|++++|++.  +|+... ...|.. ...++  ++|.|+++++
T Consensus       177 -------------------~~~~~~~~~~a~~e~G~~~--~n~~~~d~~~G~~-~g~~i~~~~g~R~saa~  225 (587)
T PLN02785        177 -------------------VAPWQAALRDSLLEVGVSP--FNGFTYDHVYGTK-VGGTIFDEFGRRHTAAE  225 (587)
T ss_pred             -------------------cChHHHHHHHHHHHcCCCc--cCCCCCCCcccee-eeEEEeCCCCEEcCHHH
Confidence                               3467789999999999973  343222 001111 11234  5799999887

>TIGR02462 pyranose_ox pyranose oxidase

Probab=99.35  E-value=2.2e-12  Score=128.36  Aligned_cols=125  Identities=18%  Similarity=0.151  Sum_probs=80.7

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCccccc-------ccc----ccc--cc----ccc-------------
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIY-------TNI----PLL--AH----FNS-------------  104 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~~~-------~~~----p~~--~~----~~~-------------  104 (284)
                      ||+||||+|++|+++|..|++ .+.+|+|||+|......       ..+    +..  ..    .++             
T Consensus         1 ~dv~ivg~Gp~G~~~a~~l~~-~g~~v~~~e~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (544)
T TIGR02462         1 YDVFIAGSGPIGCTYARLCVD-AGLKVAMVEIGAADSFLKIGAHKKNEIEYQKDIDKFVNVIKGALQSVSVPVSNLVIPT   79 (544)
T ss_pred             CcEEEECCchHHHHHHHHHHH-CCCeEEEEeccCccCCCcccccccccccccccHHHHHHHHhhhccccccccccCCcCC
Confidence            799999999999999999999 58999999999865310       000    000  00    000             


Q ss_pred             CCcccccccccCCCCCcccc-C-----CCCCCc-ccCcccccCCccccccccccCCChhhHHHHHhcCCCCC--ChhhHH
Q psy4112         105 LTHFNWGYKLEKNEEHPQCL-G-----MYNDQC-PCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGW--GYDSVL  175 (284)
Q Consensus       105 ~~~~~w~~~~~p~~~~~~~~-~-----~~~~~~-~~~rGk~lGGsS~iN~~~~~R~~~~D~d~W~~~G~~gW--~~~~l~  175 (284)
                      .....|+-.  |..  .... +     .....+ ...|-|.|||+|.+|++.+.|.++.+- .|  .+ .||  +|++|.
T Consensus        80 ~~~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~ar~R~vGGsS~hW~g~~~R~~p~~r-~g--~~-~dWPI~y~eL~  151 (544)
T TIGR02462        80 LDPTAWSAS--IES--FFVSNGKNPEQDPFRNLSGEAVTRGVGGMSTHWTCATPRFHREER-PK--LS-DDAAEDDAEWD  151 (544)
T ss_pred             CCccccccC--CCc--ceecCCCCcccCchhccChhheeeccCchhhhcCcccCCCCHHhc-cC--CC-CCCCCCHHHHH
Confidence            001112211  000  0000 0     001111 144778999999999999999999652 11  23 699  999999


Q ss_pred             HHHHHHhhccCCC
Q psy4112         176 KYFLKSENNTSEF  188 (284)
Q Consensus       176 pyf~k~E~~~~~~  188 (284)
                      |||.++|++++..
T Consensus       152 PyY~~Ae~~~gv~  164 (544)
T TIGR02462       152 RLYTKAESLIGTS  164 (544)
T ss_pred             HHHHHHHHHhCCC
Confidence            9999999998874

Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=98.11  E-value=2.8e-06  Score=81.60  Aligned_cols=37  Identities=46%  Similarity=0.759  Sum_probs=34.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .+||+||||+|+||+++|.+|++ .+.+|+|||++...
T Consensus         2 ~~~DVvIVGaGPAGs~aA~~la~-~G~~VlvlEk~~~~   38 (396)
T COG0644           2 MEYDVVIVGAGPAGSSAARRLAK-AGLDVLVLEKGSEP   38 (396)
T ss_pred             ceeeEEEECCchHHHHHHHHHHH-cCCeEEEEecCCCC
Confidence            46999999999999999999999 48999999999866

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=98.09  E-value=8.3e-06  Score=77.82  Aligned_cols=39  Identities=31%  Similarity=0.564  Sum_probs=35.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcccc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENI   92 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~~   92 (284)
                      ..+|+||||+|+||+++|..+++ .+.+|+|||+++....
T Consensus         2 ~~~dviIIGgGpAGlMaA~~aa~-~G~~V~lid~~~k~Gr   40 (408)
T COG2081           2 ERFDVIIIGGGPAGLMAAISAAK-AGRRVLLIDKGPKLGR   40 (408)
T ss_pred             CcceEEEECCCHHHHHHHHHHhh-cCCEEEEEecCccccc
Confidence            46999999999999999999999 6999999999987644

>KOG1298|consensus

Probab=98.01  E-value=6.3e-06  Score=78.30  Aligned_cols=39  Identities=31%  Similarity=0.467  Sum_probs=34.8

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ....+|+||||+|.+|+.+|+.|+++ +++|+|||+.=.+
T Consensus        42 ~~~~~DvIIVGAGV~GsaLa~~L~kd-GRrVhVIERDl~E   80 (509)
T KOG1298|consen   42 NDGAADVIIVGAGVAGSALAYALAKD-GRRVHVIERDLSE   80 (509)
T ss_pred             cCCcccEEEECCcchHHHHHHHHhhC-CcEEEEEeccccc
Confidence            35679999999999999999999995 9999999987544

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=97.98  E-value=7e-06  Score=79.74  Aligned_cols=37  Identities=35%  Similarity=0.599  Sum_probs=33.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      +.||+||||+|++|+++|..|++ .+.+|+|||++...
T Consensus         4 ~~~DViIVGaGpAG~~aA~~La~-~G~~V~llEr~~~~   40 (428)
T PRK10157          4 DIFDAIIVGAGLAGSVAALVLAR-EGAQVLVIERGNSA   40 (428)
T ss_pred             ccCcEEEECcCHHHHHHHHHHHh-CCCeEEEEEcCCCC
Confidence            46999999999999999999999 59999999998754

>PRK10015 oxidoreductase; Provisional

Probab=97.96  E-value=8.4e-06  Score=79.32  Aligned_cols=37  Identities=32%  Similarity=0.670  Sum_probs=33.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .+||+||||+|++|+++|..|++ .+.+|+|||++...
T Consensus         4 ~~~DViIVGgGpAG~~aA~~LA~-~G~~VlliEr~~~~   40 (429)
T PRK10015          4 DKFDAIVVGAGVAGSVAALVMAR-AGLDVLVIERGDSA   40 (429)
T ss_pred             cccCEEEECcCHHHHHHHHHHHh-CCCeEEEEecCCCC
Confidence            46999999999999999999999 59999999998754

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=97.87  E-value=1e-05  Score=71.71  Aligned_cols=36  Identities=33%  Similarity=0.480  Sum_probs=29.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++|++|||+|++|+++|..|+++ +++|+|+|+...
T Consensus        16 ~~~DV~IVGaGpaGl~aA~~La~~-g~kV~v~E~~~~   51 (230)
T PF01946_consen   16 LEYDVAIVGAGPAGLTAAYYLAKA-GLKVAVIERKLS   51 (230)
T ss_dssp             TEESEEEE--SHHHHHHHHHHHHH-TS-EEEEESSSS
T ss_pred             ccCCEEEECCChhHHHHHHHHHHC-CCeEEEEecCCC
Confidence            469999999999999999999994 999999998743

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=97.83  E-value=1.9e-05  Score=71.18  Aligned_cols=35  Identities=40%  Similarity=0.652  Sum_probs=32.4

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ||++|||+|++|+++|..|++ .+.+|+|||++...
T Consensus         1 ~dv~IiGaG~aGl~~A~~l~~-~g~~v~vie~~~~~   35 (295)
T TIGR02032         1 YDVVVVGAGPAGASAAYRLAD-KGLRVLLLEKKSFP   35 (295)
T ss_pred             CCEEEECCCHHHHHHHHHHHH-CCCeEEEEeccCCC
Confidence            799999999999999999999 59999999999754

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>PLN02985 squalene monooxygenase

Probab=97.80  E-value=7.7e-05  Score=74.36  Aligned_cols=38  Identities=32%  Similarity=0.477  Sum_probs=34.0

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      -...+|+||||+|++|+++|..|++ .+.+|+|||+...
T Consensus        40 ~~~~~DViIVGAG~aGlalA~aLa~-~G~~V~vlEr~~~   77 (514)
T PLN02985         40 KDGATDVIIVGAGVGGSALAYALAK-DGRRVHVIERDLR   77 (514)
T ss_pred             cCCCceEEEECCCHHHHHHHHHHHH-cCCeEEEEECcCC
Confidence            3567999999999999999999999 5999999998753

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=97.79  E-value=2.3e-05  Score=72.14  Aligned_cols=36  Identities=33%  Similarity=0.524  Sum_probs=31.3

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ++||||||+|++|+++|..|++ .+.+|+|+|+.+..
T Consensus         1 ~~dV~IvGaG~aGl~~A~~L~~-~G~~v~i~E~~~~~   36 (356)
T PF01494_consen    1 EYDVAIVGAGPAGLAAALALAR-AGIDVTIIERRPDP   36 (356)
T ss_dssp             EEEEEEE--SHHHHHHHHHHHH-TTCEEEEEESSSSC
T ss_pred             CceEEEECCCHHHHHHHHHHHh-cccccccchhcccc
Confidence            5899999999999999999999 59999999998765

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>TIGR00292 thiazole biosynthesis enzyme

Probab=97.78  E-value=2.6e-05  Score=70.91  Aligned_cols=37  Identities=32%  Similarity=0.408  Sum_probs=33.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .+||++|||+|++|+++|..|++ .+.+|+|||++...
T Consensus        20 ~~~DVvIVGgGpAGL~aA~~la~-~G~~V~vlEk~~~~   56 (254)
T TIGR00292        20 AESDVIIVGAGPSGLTAAYYLAK-NGLKVCVLERSLAF   56 (254)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence            46999999999999999999999 59999999998643

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=97.77  E-value=2.2e-05  Score=76.13  Aligned_cols=36  Identities=39%  Similarity=0.621  Sum_probs=27.2

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCccc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDEN   91 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~   91 (284)
                      ||+||||+|++|+++|..+++ .+.+|+|||++....
T Consensus         1 ydviIIGgGaAGl~aA~~aa~-~g~~V~vlE~~~~~g   36 (409)
T PF03486_consen    1 YDVIIIGGGAAGLMAAITAAE-KGARVLVLERNKRVG   36 (409)
T ss_dssp             -SEEEE--SHHHHHHHHHHHH-TT--EEEE-SSSSS-
T ss_pred             CcEEEECCCHHHHHHHHHHHh-CCCCEEEEeCCcccc
Confidence            899999999999999999999 599999999997653

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=97.77  E-value=3.3e-05  Score=75.77  Aligned_cols=39  Identities=26%  Similarity=0.385  Sum_probs=34.7

Q ss_pred             CCCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          50 PILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        50 ~~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .....|||||||+|++|+++|..|++ .+.+|+|||+...
T Consensus        35 ~~~~~~DViIVGaGPAG~~aA~~LA~-~G~~VlllEr~~~   73 (450)
T PLN00093         35 LSGRKLRVAVIGGGPAGACAAETLAK-GGIETFLIERKLD   73 (450)
T ss_pred             cCCCCCeEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCC
Confidence            34567999999999999999999999 5999999998753

>TIGR02023 BchP-ChlP geranylgeranyl reductase

Probab=97.76  E-value=2.4e-05  Score=74.72  Aligned_cols=32  Identities=38%  Similarity=0.707  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      |||||||+|++|+++|..|++ .+.+|+|||+.
T Consensus         1 yDVvIVGaGpAG~~aA~~La~-~G~~V~l~E~~   32 (388)
T TIGR02023         1 YDVAVIGGGPSGATAAETLAR-AGIETILLERA   32 (388)
T ss_pred             CeEEEECCCHHHHHHHHHHHh-CCCcEEEEECC
Confidence            799999999999999999999 59999999997

This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=97.75  E-value=3.1e-05  Score=70.43  Aligned_cols=37  Identities=30%  Similarity=0.384  Sum_probs=33.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ..++|++|||+|++|+++|..|++ .+.+|+|||+...
T Consensus        23 ~~~~DVvIVGgGpAGl~AA~~la~-~G~~V~liEk~~~   59 (257)
T PRK04176         23 YLEVDVAIVGAGPSGLTAAYYLAK-AGLKVAVFERKLS   59 (257)
T ss_pred             hccCCEEEECccHHHHHHHHHHHh-CCCeEEEEecCCC
Confidence            346999999999999999999999 6999999998754

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=97.74  E-value=4e-05  Score=55.62  Aligned_cols=32  Identities=28%  Similarity=0.530  Sum_probs=28.2

Q ss_pred             EECCChHHHHHHHHHhcCCCCeEEEeccCCccc
Q psy4112          59 IIGGGVGGSVVANRLSENPKWKVLLLESGEDEN   91 (284)
Q Consensus        59 ivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~   91 (284)
                      |||+|++|+++|.+|++. +.+|+|+|+.....
T Consensus         1 IiGaG~sGl~aA~~L~~~-g~~v~v~E~~~~~G   32 (68)
T PF13450_consen    1 IIGAGISGLAAAYYLAKA-GYRVTVFEKNDRLG   32 (68)
T ss_dssp             EES-SHHHHHHHHHHHHT-TSEEEEEESSSSSS
T ss_pred             CEeeCHHHHHHHHHHHHC-CCcEEEEecCcccC
Confidence            899999999999999994 99999999987653

...

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=97.72  E-value=2.9e-05  Score=68.98  Aligned_cols=36  Identities=31%  Similarity=0.424  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .+.|+||||+|++|+++|+.|++ .+.+|+++|+.-.
T Consensus        29 ~esDViIVGaGPsGLtAAyyLAk-~g~kV~i~E~~ls   64 (262)
T COG1635          29 LESDVIIVGAGPSGLTAAYYLAK-AGLKVAIFERKLS   64 (262)
T ss_pred             hhccEEEECcCcchHHHHHHHHh-CCceEEEEEeecc
Confidence            46899999999999999999999 5999999998643

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=97.72  E-value=3.6e-05  Score=75.26  Aligned_cols=36  Identities=36%  Similarity=0.418  Sum_probs=33.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ..++||||||+|.+|+++|.++++ .+.+|+|||+++
T Consensus         2 ~~~~DVvVVG~G~aGl~AA~~aa~-~G~~V~vlEk~~   37 (466)
T PRK08274          2 ASMVDVLVIGGGNAALCAALAARE-AGASVLLLEAAP   37 (466)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence            457999999999999999999999 599999999876

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=97.70  E-value=3.9e-05  Score=72.26  Aligned_cols=36  Identities=31%  Similarity=0.367  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .+||++|||+|.+|+++|..|++ .+.+|+|||++..
T Consensus         2 ~~~dv~IIGgGi~G~s~A~~L~~-~g~~V~lie~~~~   37 (376)
T PRK11259          2 MRYDVIVIGLGSMGSAAGYYLAR-RGLRVLGLDRFMP   37 (376)
T ss_pred             CcccEEEECCCHHHHHHHHHHHH-CCCeEEEEecccC
Confidence            35999999999999999999999 4999999999853

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=97.69  E-value=3.9e-05  Score=70.61  Aligned_cols=32  Identities=44%  Similarity=0.667  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      |+||||+|.+|+++|..|++ .+.+|+|||++.
T Consensus         1 DvvIIGaGi~G~~~A~~La~-~G~~V~l~e~~~   32 (358)
T PF01266_consen    1 DVVIIGAGIAGLSTAYELAR-RGHSVTLLERGD   32 (358)
T ss_dssp             EEEEECTSHHHHHHHHHHHH-TTSEEEEEESSS
T ss_pred             CEEEECcCHHHHHHHHHHHH-CCCeEEEEeecc
Confidence            89999999999999999999 699999999993

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form

Probab=97.68  E-value=5.2e-05  Score=72.61  Aligned_cols=44  Identities=30%  Similarity=0.376  Sum_probs=36.7

Q ss_pred             ccCCCCCCCcccEEEECCChHHHHHHHHHhcCCC-CeEEEeccCC
Q psy4112          45 FLGNKPILSEYDFVIIGGGVGGSVVANRLSENPK-WKVLLLESGE   88 (284)
Q Consensus        45 ~~~~~~~~~~~d~iivg~G~~g~~~a~~l~~~~~-~~vl~lE~G~   88 (284)
                      .|..+.....+|++|||+|.+|+++|..|++..+ .+|+|||++.
T Consensus        21 ~~~~~~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~   65 (407)
T TIGR01373        21 AWRSPEPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW   65 (407)
T ss_pred             ccCCCCCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence            3555556778999999999999999999998326 4899999974

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=97.68  E-value=4.9e-05  Score=72.01  Aligned_cols=37  Identities=30%  Similarity=0.554  Sum_probs=33.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..+|+||||+|++|+++|..|++ .+.+|+|+|++...
T Consensus         4 ~~~dv~IvGgG~aGl~~A~~L~~-~G~~v~v~E~~~~~   40 (388)
T PRK07608          4 MKFDVVVVGGGLVGASLALALAQ-SGLRVALLAPRAPP   40 (388)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHh-CCCeEEEEecCCCc
Confidence            46899999999999999999999 59999999998764

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.67  E-value=5.1e-05  Score=72.62  Aligned_cols=38  Identities=32%  Similarity=0.581  Sum_probs=34.4

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ...+|++|||+|++|+++|..|++ .+.+|+|||+.+..
T Consensus        16 ~~~~dV~IvGaG~aGl~~A~~L~~-~G~~v~v~E~~~~~   53 (415)
T PRK07364         16 SLTYDVAIVGGGIVGLTLAAALKD-SGLRIALIEAQPAE   53 (415)
T ss_pred             ccccCEEEECcCHHHHHHHHHHhc-CCCEEEEEecCCcc
Confidence            446999999999999999999999 59999999998754

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=97.67  E-value=4.4e-05  Score=74.76  Aligned_cols=38  Identities=24%  Similarity=0.329  Sum_probs=35.0

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++||+||||+|.+||++|..|++ .+++||+||+....
T Consensus         2 ~~~~DViViGtGL~e~ilAa~Ls~-~GkkVLhlD~n~~y   39 (443)
T PTZ00363          2 DETYDVIVCGTGLKECILSGLLSV-NGKKVLHMDRNPYY   39 (443)
T ss_pred             CCcceEEEECCChHHHHHHhhhhh-CCCEEEEecCCCCc
Confidence            467999999999999999999999 69999999998765

>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed

Probab=97.66  E-value=4.7e-05  Score=72.35  Aligned_cols=36  Identities=31%  Similarity=0.501  Sum_probs=32.9

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      .++||+||||+|++|+++|..|++ .+.+|+|||+.+
T Consensus         3 ~~~~dViIvGgG~aGl~~A~~La~-~G~~V~liE~~~   38 (391)
T PRK08020          3 NQPTDIAIVGGGMVGAALALGLAQ-HGFSVAVLEHAA   38 (391)
T ss_pred             cccccEEEECcCHHHHHHHHHHhc-CCCEEEEEcCCC
Confidence            356999999999999999999999 599999999875

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=97.65  E-value=4.7e-05  Score=71.83  Aligned_cols=34  Identities=32%  Similarity=0.531  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ||+||||+|.+|+++|..|++ .+.+|+|||++..
T Consensus         1 ~dvvIIGaGi~G~s~A~~La~-~g~~V~l~e~~~~   34 (380)
T TIGR01377         1 FDVIVVGAGIMGCFAAYHLAK-HGKKTLLLEQFDL   34 (380)
T ss_pred             CcEEEECCCHHHHHHHHHHHH-CCCeEEEEeccCC
Confidence            699999999999999999999 4899999999753

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional

Probab=97.64  E-value=5.4e-05  Score=75.03  Aligned_cols=38  Identities=34%  Similarity=0.545  Sum_probs=34.2

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      +..+||+||||+|.+|+.+|..|++ .+.+|+|||++..
T Consensus         3 ~~~~~DVvIIGGGi~G~~~A~~la~-rG~~V~LlEk~d~   40 (502)
T PRK13369          3 EPETYDLFVIGGGINGAGIARDAAG-RGLKVLLCEKDDL   40 (502)
T ss_pred             CCcccCEEEECCCHHHHHHHHHHHh-CCCcEEEEECCCC
Confidence            3567999999999999999999999 4999999999953

>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins

Probab=97.64  E-value=5.2e-05  Score=72.37  Aligned_cols=34  Identities=35%  Similarity=0.659  Sum_probs=31.1

Q ss_pred             cEEEECCChHHHHHHHHH--hcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRL--SENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l--~~~~~~~vl~lE~G~~~   90 (284)
                      ||||||+|+||+++|.+|  ++ .+.+|+|||..+..
T Consensus         1 DviIvGaGpAGlslA~~l~~~~-~g~~Vllid~~~~~   36 (374)
T PF05834_consen    1 DVIIVGAGPAGLSLARRLADAR-PGLSVLLIDPKPKP   36 (374)
T ss_pred             CEEEECCcHHHHHHHHHHHhcC-CCCEEEEEcCCccc
Confidence            899999999999999999  66 69999999998765

Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process

>PLN02463 lycopene beta cyclase

Probab=97.63  E-value=6.5e-05  Score=73.66  Aligned_cols=38  Identities=29%  Similarity=0.426  Sum_probs=34.0

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      -...||+||||+|++|+++|..|++ .+.+|+|||..+.
T Consensus        25 ~~~~~DVvIVGaGpAGLalA~~La~-~Gl~V~liE~~~~   62 (447)
T PLN02463         25 KSRVVDLVVVGGGPAGLAVAQQVSE-AGLSVCCIDPSPL   62 (447)
T ss_pred             cccCceEEEECCCHHHHHHHHHHHH-CCCeEEEeccCcc
Confidence            4557999999999999999999998 5999999998753

>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed

Probab=97.63  E-value=5.6e-05  Score=75.15  Aligned_cols=37  Identities=32%  Similarity=0.618  Sum_probs=33.6

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++||+||||+|..|+.+|..|++ .+.+|+|||++..
T Consensus         4 ~~~~DVvIIGGGi~G~~~A~~la~-rGl~V~LvEk~d~   40 (508)
T PRK12266          4 METYDLLVIGGGINGAGIARDAAG-RGLSVLLCEQDDL   40 (508)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence            456999999999999999999999 5999999999743

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.62  E-value=6e-05  Score=73.26  Aligned_cols=35  Identities=37%  Similarity=0.683  Sum_probs=32.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      +.||+||||+|++|+.+|.+|++ .+.+|+|||+++
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~la~-~g~~V~lie~~~   36 (441)
T PRK08010          2 NKYQAVIIGFGKAGKTLAVTLAK-AGWRVALIEQSN   36 (441)
T ss_pred             CcCCEEEECCCHhHHHHHHHHHH-CCCeEEEEcCCC
Confidence            35999999999999999999999 599999999875

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=97.60  E-value=5.7e-05  Score=74.71  Aligned_cols=37  Identities=35%  Similarity=0.557  Sum_probs=33.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..+|+||||+|..|+++|..|++ .+++|+|+|+....
T Consensus         2 ~~~dvvVIGaG~~GL~aAa~LA~-~G~~V~VlE~~~~~   38 (487)
T COG1233           2 PMYDVVVIGAGLNGLAAAALLAR-AGLKVTVLEKNDRV   38 (487)
T ss_pred             CCccEEEECCChhHHHHHHHHHh-CCCEEEEEEecCCC
Confidence            46999999999999999999999 69999999976544

>PRK09126 hypothetical protein; Provisional

Probab=97.60  E-value=6.3e-05  Score=71.45  Aligned_cols=35  Identities=31%  Similarity=0.432  Sum_probs=32.8

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ++|+||||+|++|+++|..|++ .+.+|+|+|+...
T Consensus         3 ~~dviIvGgG~aGl~~A~~L~~-~G~~v~v~E~~~~   37 (392)
T PRK09126          3 HSDIVVVGAGPAGLSFARSLAG-SGLKVTLIERQPL   37 (392)
T ss_pred             cccEEEECcCHHHHHHHHHHHh-CCCcEEEEeCCCc
Confidence            5899999999999999999999 5999999999875

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=97.60  E-value=6.4e-05  Score=70.80  Aligned_cols=34  Identities=26%  Similarity=0.474  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      +|++|||+|.+|+++|..|++ .+.+|+|||++..
T Consensus         1 ~dv~IIG~Gi~G~s~A~~L~~-~G~~V~vle~~~~   34 (365)
T TIGR03364         1 YDLIIVGAGILGLAHAYAAAR-RGLSVTVIERSSR   34 (365)
T ss_pred             CCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence            699999999999999999999 4999999999753

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=97.59  E-value=7.1e-05  Score=71.31  Aligned_cols=37  Identities=41%  Similarity=0.526  Sum_probs=33.3

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ...+|++|||+|++|+++|..|++ .+.+|+|||+.+.
T Consensus         4 ~~~~dV~IvGaG~aGl~~A~~La~-~G~~v~liE~~~~   40 (392)
T PRK08773          4 RSRRDAVIVGGGVVGAACALALAD-AGLSVALVEGREP   40 (392)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhc-CCCEEEEEeCCCC
Confidence            346899999999999999999999 5999999999763

>PRK08013 oxidoreductase; Provisional

Probab=97.59  E-value=7.6e-05  Score=71.56  Aligned_cols=35  Identities=37%  Similarity=0.469  Sum_probs=32.8

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .+|++|||+|++|+++|..|++ .+.+|+|||+.+.
T Consensus         3 ~~dV~IvGaGpaGl~~A~~La~-~G~~v~viE~~~~   37 (400)
T PRK08013          3 SVDVVIAGGGMVGLAVACGLQG-SGLRVAVLEQRVP   37 (400)
T ss_pred             cCCEEEECcCHHHHHHHHHHhh-CCCEEEEEeCCCC
Confidence            5899999999999999999999 5999999999875

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.58  E-value=8e-05  Score=70.71  Aligned_cols=37  Identities=27%  Similarity=0.355  Sum_probs=33.4

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ...+|+||||+|++|+++|..|++ .+.+|+|||+.+.
T Consensus         5 ~~~~dViIVGaG~~Gl~~A~~L~~-~G~~v~liE~~~~   41 (388)
T PRK07494          5 KEHTDIAVIGGGPAGLAAAIALAR-AGASVALVAPEPP   41 (388)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHhc-CCCeEEEEeCCCC
Confidence            346899999999999999999999 5999999999864

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=97.58  E-value=6.7e-05  Score=71.98  Aligned_cols=34  Identities=44%  Similarity=0.631  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ||||||+|.+|+.+|.++++ .+.+|+|||+++..
T Consensus         1 DVvVIG~G~AGl~AA~~Aae-~G~~V~lvek~~~~   34 (417)
T PF00890_consen    1 DVVVIGGGLAGLAAAIEAAE-AGAKVLLVEKGPRL   34 (417)
T ss_dssp             SEEEE-SSHHHHHHHHHHHH-TTT-EEEEESSSGG
T ss_pred             CEEEECCCHHHHHHHHHHhh-hcCeEEEEEeeccc
Confidence            89999999999999999999 59999999999863

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>PRK06116 glutathione reductase; Validated

Probab=97.58  E-value=7.5e-05  Score=72.78  Aligned_cols=34  Identities=44%  Similarity=0.722  Sum_probs=31.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      .+||+||||+|++|+.+|.+|++ .+.+|+|+|++
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~~a~-~G~~V~liE~~   36 (450)
T PRK06116          3 KDYDLIVIGGGSGGIASANRAAM-YGAKVALIEAK   36 (450)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH-CCCeEEEEecc
Confidence            46999999999999999999999 59999999986

>PRK07045 putative monooxygenase; Reviewed

Probab=97.58  E-value=7.5e-05  Score=71.05  Aligned_cols=37  Identities=24%  Similarity=0.408  Sum_probs=34.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..+|++|||+|++|+++|..|++ .+.+|+|+|+.+..
T Consensus         4 ~~~~V~IiGgGpaGl~~A~~L~~-~G~~v~v~E~~~~~   40 (388)
T PRK07045          4 NPVDVLINGSGIAGVALAHLLGA-RGHSVTVVERAARN   40 (388)
T ss_pred             ceeEEEEECCcHHHHHHHHHHHh-cCCcEEEEeCCCcc
Confidence            46899999999999999999999 59999999998854

>TIGR02028 ChlP geranylgeranyl reductase

Probab=97.57  E-value=7e-05  Score=72.06  Aligned_cols=34  Identities=29%  Similarity=0.542  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      +|+||||+|++|+++|..|++ .+.+|+|||+...
T Consensus         1 ~~VvIVGaGPAG~~aA~~la~-~G~~V~llE~~~~   34 (398)
T TIGR02028         1 LRVAVVGGGPAGASAAETLAS-AGIQTFLLERKPD   34 (398)
T ss_pred             CeEEEECCcHHHHHHHHHHHh-CCCcEEEEecCCC
Confidence            699999999999999999999 5999999998643

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.56  E-value=8.3e-05  Score=71.16  Aligned_cols=34  Identities=38%  Similarity=0.619  Sum_probs=31.8

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ++|++|||+|++|+++|..|++ .+.+|+|||+.+
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~-~G~~v~viE~~~   35 (405)
T PRK05714          2 RADLLIVGAGMVGSALALALQG-SGLEVLLLDGGP   35 (405)
T ss_pred             CccEEEECccHHHHHHHHHHhc-CCCEEEEEcCCC
Confidence            4899999999999999999999 599999999876

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=97.55  E-value=8.3e-05  Score=69.31  Aligned_cols=36  Identities=28%  Similarity=0.592  Sum_probs=33.0

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .||+||||+|.+|+++|..+++ -+.+|||||+....
T Consensus         1 ~fd~lIVGaGlsG~V~A~~a~~-~gk~VLIvekR~HI   36 (374)
T COG0562           1 MFDYLIVGAGLSGAVIAEVAAQ-LGKRVLIVEKRNHI   36 (374)
T ss_pred             CCcEEEECCchhHHHHHHHHHH-cCCEEEEEeccccC
Confidence            4899999999999999998888 59999999999875

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=97.55  E-value=8.6e-05  Score=72.09  Aligned_cols=35  Identities=34%  Similarity=0.574  Sum_probs=32.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      .+||++|||+|++|+.+|.+|++ .+.+|+|+|++.
T Consensus         2 ~~~dvvVIG~GpaG~~aA~~l~~-~g~~V~liE~~~   36 (438)
T PRK07251          2 LTYDLIVIGFGKAGKTLAAKLAS-AGKKVALVEESK   36 (438)
T ss_pred             CccCEEEECCCHHHHHHHHHHHh-CCCEEEEEecCC
Confidence            36999999999999999999999 599999999875

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=97.55  E-value=8.3e-05  Score=70.60  Aligned_cols=34  Identities=35%  Similarity=0.601  Sum_probs=31.0

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      |+||||+|++|+++|..|++ .+.+|+|||+.+..
T Consensus         1 DviIiGaG~AGl~~A~~la~-~g~~v~liE~~~~~   34 (388)
T TIGR01790         1 DLAVIGGGPAGLAIALELAR-PGLRVQLIEPHPPI   34 (388)
T ss_pred             CEEEECCCHHHHHHHHHHHh-CCCeEEEEccCCCC
Confidence            89999999999999999998 59999999987643

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=97.55  E-value=8.8e-05  Score=69.83  Aligned_cols=34  Identities=38%  Similarity=0.607  Sum_probs=31.7

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ||||||+|++|+++|..|++ .+.+|+|+|+.+..
T Consensus         1 dViIvGaG~aGl~~A~~L~~-~G~~v~v~Er~~~~   34 (385)
T TIGR01988         1 DIVIVGGGMVGLALALALAR-SGLKIALIEATPAE   34 (385)
T ss_pred             CEEEECCCHHHHHHHHHHhc-CCCEEEEEeCCCcc
Confidence            89999999999999999999 59999999999754

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=97.55  E-value=7.8e-05  Score=72.92  Aligned_cols=34  Identities=44%  Similarity=0.766  Sum_probs=31.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      ++||++|||+|++|..+|.++++ .+.+|+|+|++
T Consensus         1 ~~yDvvVIG~GpaG~~aA~~aa~-~G~~V~liE~~   34 (450)
T TIGR01421         1 KHYDYLVIGGGSGGIASARRAAE-HGAKALLVEAK   34 (450)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH-CCCcEEEeccc
Confidence            36999999999999999999999 59999999985

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=97.54  E-value=8.2e-05  Score=71.30  Aligned_cols=34  Identities=21%  Similarity=0.427  Sum_probs=31.7

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      +|+||||+|..|+++|.+|++ .+.+|+|||++..
T Consensus         2 ~~vvIIGaG~~G~~~A~~La~-~g~~V~vle~~~~   35 (410)
T PRK12409          2 SHIAVIGAGITGVTTAYALAQ-RGYQVTVFDRHRY   35 (410)
T ss_pred             CEEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence            699999999999999999999 4999999999863

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=97.54  E-value=8.2e-05  Score=71.09  Aligned_cols=36  Identities=44%  Similarity=0.725  Sum_probs=32.2

Q ss_pred             cccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGED   89 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~   89 (284)
                      .+|++|||+|.+|+++|..|++. ++.+|+|||++..
T Consensus         2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~   38 (393)
T PRK11728          2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESG   38 (393)
T ss_pred             CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCc
Confidence            48999999999999999999983 3899999999854

>PLN02661 Putative thiazole synthesis

Probab=97.53  E-value=7.4e-05  Score=70.98  Aligned_cols=39  Identities=36%  Similarity=0.561  Sum_probs=34.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..++|++|||+|++|+++|..|+++++.+|+|||++...
T Consensus        90 ~~~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~  128 (357)
T PLN02661         90 YADTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSP  128 (357)
T ss_pred             cccCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence            457899999999999999999997568999999987543

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=97.53  E-value=9.4e-05  Score=71.03  Aligned_cols=35  Identities=34%  Similarity=0.682  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      +|++|||+|++|+++|.+|++ .+.+|+|||++...
T Consensus         2 ~DvvIIGaG~aGlsaA~~La~-~G~~V~viEk~~~i   36 (377)
T TIGR00031         2 FDYIIVGAGLSGIVLANILAQ-LNKRVLVVEKRNHI   36 (377)
T ss_pred             CcEEEECCCHHHHHHHHHHHh-CCCeEEEEecCCCC
Confidence            799999999999999999998 58999999986543

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK06185 hypothetical protein; Provisional

Probab=97.52  E-value=9.9e-05  Score=70.53  Aligned_cols=37  Identities=30%  Similarity=0.460  Sum_probs=33.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ..++|++|||+|++|+++|..|++ .+.+|+|||+.+.
T Consensus         4 ~~~~dV~IvGgG~~Gl~~A~~La~-~G~~v~liE~~~~   40 (407)
T PRK06185          4 VETTDCCIVGGGPAGMMLGLLLAR-AGVDVTVLEKHAD   40 (407)
T ss_pred             cccccEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCc
Confidence            356999999999999999999999 5999999999864

>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase

Probab=97.50  E-value=9.9e-05  Score=72.27  Aligned_cols=36  Identities=33%  Similarity=0.547  Sum_probs=32.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGE   88 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~   88 (284)
                      .++|++|||+|.+|+++|.+|++. ++.+|+|||++.
T Consensus        23 ~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~   59 (460)
T TIGR03329        23 TQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADL   59 (460)
T ss_pred             ceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCc
Confidence            358999999999999999999984 489999999975

This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.

>PRK06370 mercuric reductase; Validated

Probab=97.50  E-value=0.00011  Score=71.86  Aligned_cols=36  Identities=36%  Similarity=0.560  Sum_probs=32.6

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ..+||+||||+|++|..+|.++++ .+.+|+|+|++.
T Consensus         3 ~~~~DvvVIG~GpaG~~aA~~aa~-~G~~v~lie~~~   38 (463)
T PRK06370          3 AQRYDAIVIGAGQAGPPLAARAAG-LGMKVALIERGL   38 (463)
T ss_pred             CccccEEEECCCHHHHHHHHHHHh-CCCeEEEEecCc
Confidence            456999999999999999999999 599999999863

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=97.48  E-value=0.00012  Score=69.69  Aligned_cols=34  Identities=32%  Similarity=0.665  Sum_probs=31.6

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ++|++|||+|++|+++|..|++ .+.+|+|+|+.+
T Consensus         3 ~~dv~IvGgG~aGl~~A~~L~~-~G~~v~l~E~~~   36 (384)
T PRK08849          3 KYDIAVVGGGMVGAATALGFAK-QGRSVAVIEGGE   36 (384)
T ss_pred             cccEEEECcCHHHHHHHHHHHh-CCCcEEEEcCCC
Confidence            5899999999999999999999 599999999875

>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional

Probab=97.48  E-value=0.00011  Score=73.67  Aligned_cols=35  Identities=31%  Similarity=0.540  Sum_probs=32.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      .+||+||||+|..|+.+|..|++ .+.+|+|||++.
T Consensus         5 ~~~DVvIIGGGi~G~~iA~~La~-rG~~V~LlEk~d   39 (546)
T PRK11101          5 QETDVIIIGGGATGAGIARDCAL-RGLRCILVERHD   39 (546)
T ss_pred             ccccEEEECcCHHHHHHHHHHHH-cCCeEEEEECCC
Confidence            46999999999999999999999 599999999964

>PRK07121 hypothetical protein; Validated

Probab=97.48  E-value=0.00012  Score=72.35  Aligned_cols=36  Identities=31%  Similarity=0.446  Sum_probs=33.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++||||||+|.+|+++|.++++ .+.+|+|||+...
T Consensus        19 ~~~DVvVVGaG~AGl~AA~~aae-~G~~VillEK~~~   54 (492)
T PRK07121         19 DEADVVVVGFGAAGACAAIEAAA-AGARVLVLERAAG   54 (492)
T ss_pred             CccCEEEECcCHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence            47999999999999999999999 5999999999765

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=97.47  E-value=0.00012  Score=69.67  Aligned_cols=36  Identities=31%  Similarity=0.516  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGED   89 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~   89 (284)
                      .||++|||+|++|+++|..|++. ++.+|+|||+.+.
T Consensus         1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~   37 (403)
T PRK07333          1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA   37 (403)
T ss_pred             CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence            38999999999999999999984 2599999999864

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=97.47  E-value=0.00012  Score=71.78  Aligned_cols=35  Identities=51%  Similarity=0.788  Sum_probs=32.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ..||+||||+|++|+.+|.+|++ .+.+|+|+|++.
T Consensus         3 ~~ydvvVIG~GpaG~~aA~~aa~-~G~~v~lie~~~   37 (472)
T PRK05976          3 KEYDLVIIGGGPGGYVAAIRAGQ-LGLKTALVEKGK   37 (472)
T ss_pred             ccccEEEECCCHHHHHHHHHHHh-CCCeEEEEEccC
Confidence            46999999999999999999999 599999999863

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=97.47  E-value=0.00011  Score=71.73  Aligned_cols=33  Identities=33%  Similarity=0.527  Sum_probs=31.0

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      +||++|||+|++|..+|.++++ .+.+|+|+|++
T Consensus         2 ~yDvvVIG~GpaG~~aA~~aa~-~G~~V~lie~~   34 (446)
T TIGR01424         2 DYDLFVIGAGSGGVRAARLAAN-HGAKVAIAEEP   34 (446)
T ss_pred             cccEEEECCCHHHHHHHHHHHh-CCCcEEEEecC
Confidence            5999999999999999999999 59999999984

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated

Probab=97.47  E-value=0.00012  Score=74.26  Aligned_cols=35  Identities=34%  Similarity=0.509  Sum_probs=32.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ..|||||||+|+||+.+|..+++ .+.+|+|||...
T Consensus         3 ~~yDVIVVGGGpAG~eAA~~aAR-~G~kV~LiE~~~   37 (618)
T PRK05192          3 EEYDVIVVGGGHAGCEAALAAAR-MGAKTLLLTHNL   37 (618)
T ss_pred             ccceEEEECchHHHHHHHHHHHH-cCCcEEEEeccc
Confidence            46999999999999999999999 599999999875

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=97.46  E-value=0.00011  Score=71.39  Aligned_cols=34  Identities=38%  Similarity=0.522  Sum_probs=28.0

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      |+||||+|++|+.+|..+++ .+.+|+|||+++..
T Consensus         1 DVVVvGgG~aG~~AAi~AAr-~G~~VlLiE~~~~l   34 (428)
T PF12831_consen    1 DVVVVGGGPAGVAAAIAAAR-AGAKVLLIEKGGFL   34 (428)
T ss_dssp             EEEEE--SHHHHHHHHHHHH-TTS-EEEE-SSSSS
T ss_pred             CEEEECccHHHHHHHHHHHH-CCCEEEEEECCccC
Confidence            89999999999999999999 59999999999865

>TIGR02730 carot_isom carotene isomerase

Probab=97.46  E-value=0.00013  Score=72.12  Aligned_cols=35  Identities=43%  Similarity=0.597  Sum_probs=32.5

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ||+||||+|.+|+++|..|++ .+.+|+|||+....
T Consensus         1 ~dvvViGaG~~Gl~aA~~La~-~G~~V~vlE~~~~~   35 (493)
T TIGR02730         1 YDAIVIGSGIGGLVTATQLAV-KGAKVLVLERYLIP   35 (493)
T ss_pred             CcEEEECCcHHHHHHHHHHHH-CCCcEEEEECCCCC
Confidence            699999999999999999999 59999999998654

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>KOG0029|consensus

Probab=97.45  E-value=0.00014  Score=72.39  Aligned_cols=40  Identities=25%  Similarity=0.431  Sum_probs=35.8

Q ss_pred             CCCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          50 PILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        50 ~~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ......+|||||+|.+|+++|..|.+ -+.+|+||||....
T Consensus        11 ~~~~~~~VIVIGAGiaGLsAArqL~~-~G~~V~VLEARdRv   50 (501)
T KOG0029|consen   11 EAGKKKKVIVIGAGLAGLSAARQLQD-FGFDVLVLEARDRV   50 (501)
T ss_pred             cccCCCcEEEECCcHHHHHHHHHHHH-cCCceEEEeccCCc
Confidence            34667899999999999999999999 59999999998765

>PRK11445 putative oxidoreductase; Provisional

Probab=97.45  E-value=0.00012  Score=69.04  Aligned_cols=34  Identities=35%  Similarity=0.555  Sum_probs=31.0

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .||++|||+|++|+++|..|++ . .+|+|||+.+.
T Consensus         1 ~~dV~IvGaGpaGl~~A~~La~-~-~~V~liE~~~~   34 (351)
T PRK11445          1 HYDVAIIGLGPAGSALARLLAG-K-MKVIAIDKKHQ   34 (351)
T ss_pred             CceEEEECCCHHHHHHHHHHhc-c-CCEEEEECCCc
Confidence            3899999999999999999998 5 89999998764

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=97.45  E-value=0.00013  Score=65.98  Aligned_cols=33  Identities=36%  Similarity=0.567  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ||++|||+|++|+.+|..|.+ .+.+|+|+|++.
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~-~g~~v~lie~~~   33 (300)
T TIGR01292         1 YDVIIIGAGPAGLTAAIYAAR-ANLKTLIIEGME   33 (300)
T ss_pred             CcEEEECCCHHHHHHHHHHHH-CCCCEEEEeccC
Confidence            799999999999999999998 599999999875

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.44  E-value=0.00014  Score=68.96  Aligned_cols=35  Identities=37%  Similarity=0.531  Sum_probs=31.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcC--CCCeEEEeccC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSEN--PKWKVLLLESG   87 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~--~~~~vl~lE~G   87 (284)
                      ..+|++|||+|++|+++|..|++.  .+.+|+|||+-
T Consensus         2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732          2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            458999999999999999999872  29999999984

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=97.44  E-value=0.00014  Score=70.95  Aligned_cols=32  Identities=50%  Similarity=0.756  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEecc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLES   86 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~   86 (284)
                      +||+||||+|++|+.+|.+|++ .+.+|+|||+
T Consensus         1 ~yDvvVIG~G~aGl~aA~~la~-~G~~v~lie~   32 (461)
T TIGR01350         1 AYDVVVIGGGPGGYVAAIRAAQ-LGLKVALVEK   32 (461)
T ss_pred             CccEEEECCCHHHHHHHHHHHh-CCCeEEEEec
Confidence            4899999999999999999999 5999999998

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=97.43  E-value=0.00015  Score=68.58  Aligned_cols=34  Identities=35%  Similarity=0.545  Sum_probs=31.4

Q ss_pred             cEEEECCChHHHHHHHHHhcCCC-CeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPK-WKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~-~~vl~lE~G~~~   90 (284)
                      |++|||+|++|+++|..|++ .+ .+|+|+|+....
T Consensus         1 dv~IvGaG~aGl~~A~~L~~-~G~~~v~v~E~~~~~   35 (382)
T TIGR01984         1 DVIIVGGGLVGLSLALALSR-LGKIKIALIEANSPS   35 (382)
T ss_pred             CEEEECccHHHHHHHHHHhc-CCCceEEEEeCCCcc
Confidence            89999999999999999999 58 999999998754

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>PRK07804 L-aspartate oxidase; Provisional

Probab=97.43  E-value=0.00019  Score=72.00  Aligned_cols=39  Identities=23%  Similarity=0.336  Sum_probs=34.7

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ...++||||||+|.||+.+|.++++ .+.+|+|||++...
T Consensus        13 ~~~~~DVlVIG~G~AGl~AAi~aae-~G~~VilleK~~~~   51 (541)
T PRK07804         13 WRDAADVVVVGSGVAGLTAALAARR-AGRRVLVVTKAALD   51 (541)
T ss_pred             cccccCEEEECccHHHHHHHHHHHH-cCCeEEEEEccCCC
Confidence            3557999999999999999999999 58999999998754

>PLN02697 lycopene epsilon cyclase

Probab=97.43  E-value=0.00014  Score=72.86  Aligned_cols=36  Identities=25%  Similarity=0.297  Sum_probs=32.4

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ...||+||||+|++|+++|..|++ .+.+|+|||.+.
T Consensus       106 ~~~~DVvIVGaGPAGLalA~~Lak-~Gl~V~LIe~~~  141 (529)
T PLN02697        106 DGTLDLVVIGCGPAGLALAAESAK-LGLNVGLIGPDL  141 (529)
T ss_pred             cCcccEEEECcCHHHHHHHHHHHh-CCCcEEEecCcc
Confidence            346999999999999999999999 599999999863

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=97.42  E-value=0.00015  Score=70.70  Aligned_cols=35  Identities=29%  Similarity=0.448  Sum_probs=32.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ..||+||||+|++|+.+|.+|++ .+.+|+|+|++.
T Consensus         4 ~~yDvvVIGaGpaG~~aA~~la~-~G~~v~liE~~~   38 (461)
T PRK05249          4 YDYDLVVIGSGPAGEGAAMQAAK-LGKRVAVIERYR   38 (461)
T ss_pred             ccccEEEECCCHHHHHHHHHHHh-CCCEEEEEeccc
Confidence            46999999999999999999999 599999999864

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=97.42  E-value=0.00015  Score=72.02  Aligned_cols=38  Identities=26%  Similarity=0.379  Sum_probs=34.1

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..++||||||+|.+|+++|.++++ .+.+|+|||+.+..
T Consensus        59 ~~~~DVvVVG~G~AGl~AAi~Aa~-~Ga~VivlEK~~~~   96 (506)
T PRK06481         59 KDKYDIVIVGAGGAGMSAAIEAKD-AGMNPVILEKMPVA   96 (506)
T ss_pred             cccCCEEEECcCHHHHHHHHHHHH-CCCCEEEEECCCCC
Confidence            457999999999999999999999 59999999988653

>PLN02464 glycerol-3-phosphate dehydrogenase

Probab=97.42  E-value=0.00015  Score=74.01  Aligned_cols=36  Identities=28%  Similarity=0.435  Sum_probs=33.0

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      .+.||+||||+|..|+.+|..|++ .+.+|+|||++.
T Consensus        69 ~~~~DVvVIGGGi~Ga~~A~~lA~-rGl~V~LvE~~d  104 (627)
T PLN02464         69 AEPLDVLVVGGGATGAGVALDAAT-RGLRVGLVERED  104 (627)
T ss_pred             CCccCEEEECCCHHHHHHHHHHHh-CCCEEEEEeccc
Confidence            355999999999999999999999 599999999984

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=97.42  E-value=0.00016  Score=70.55  Aligned_cols=34  Identities=41%  Similarity=0.676  Sum_probs=31.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      .+||+||||+|++|..+|.+|++ .+.+|+|||++
T Consensus         2 ~~yDvvIIG~G~aGl~aA~~l~~-~g~~v~lie~~   35 (460)
T PRK06292          2 EKYDVIVIGAGPAGYVAARRAAK-LGKKVALIEKG   35 (460)
T ss_pred             CcccEEEECCCHHHHHHHHHHHH-CCCeEEEEeCC
Confidence            45999999999999999999999 59999999984

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=97.41  E-value=0.00016  Score=69.25  Aligned_cols=34  Identities=32%  Similarity=0.572  Sum_probs=31.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      ..+|++|||+|++|+++|..|++ .+.+|+|||+.
T Consensus         3 ~~~dV~IvGaG~~Gl~~A~~L~~-~G~~v~viE~~   36 (405)
T PRK08850          3 QSVDVAIIGGGMVGLALAAALKE-SDLRIAVIEGQ   36 (405)
T ss_pred             CcCCEEEECccHHHHHHHHHHHh-CCCEEEEEcCC
Confidence            35899999999999999999999 59999999986

>PRK08244 hypothetical protein; Provisional

Probab=97.40  E-value=0.00016  Score=71.21  Aligned_cols=36  Identities=31%  Similarity=0.530  Sum_probs=33.0

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ++||+|||+|++|+++|..|++ .+.+|+|||+.+..
T Consensus         2 ~~dVlIVGaGpaGl~lA~~L~~-~G~~v~viEr~~~~   37 (493)
T PRK08244          2 KYEVIIIGGGPVGLMLASELAL-AGVKTCVIERLKET   37 (493)
T ss_pred             CCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence            4899999999999999999999 59999999998654

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.40  E-value=0.00016  Score=70.69  Aligned_cols=35  Identities=40%  Similarity=0.631  Sum_probs=32.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      .+||+||||+|++|+.+|.+|++ .+.+|+|+|++.
T Consensus         3 ~~yDvvVIGaGpaG~~aA~~aa~-~G~~V~liE~~~   37 (462)
T PRK06416          3 FEYDVIVIGAGPGGYVAAIRAAQ-LGLKVAIVEKEK   37 (462)
T ss_pred             ccccEEEECCCHHHHHHHHHHHH-CCCcEEEEeccc
Confidence            46999999999999999999999 599999999864

>TIGR01789 lycopene_cycl lycopene cyclase

Probab=97.40  E-value=0.00015  Score=69.17  Aligned_cols=34  Identities=35%  Similarity=0.863  Sum_probs=31.0

Q ss_pred             cEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCc
Q psy4112          56 DFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGED   89 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~   89 (284)
                      |+||||+|++|+++|.+|++. ++++|+|||+++.
T Consensus         1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~   35 (370)
T TIGR01789         1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRT   35 (370)
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            899999999999999999973 4899999999873

This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.

>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase

Probab=97.40  E-value=0.00015  Score=71.73  Aligned_cols=35  Identities=31%  Similarity=0.600  Sum_probs=31.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGED   89 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~   89 (284)
                      +|++|||+|.+|+++|..|++. ++.+|+|||++..
T Consensus         1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~   36 (483)
T TIGR01320         1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDA   36 (483)
T ss_pred             CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence            6999999999999999999984 6899999999753

This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.

>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6

Probab=97.40  E-value=0.00017  Score=70.12  Aligned_cols=34  Identities=44%  Similarity=0.717  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHhcC---CCCeEEEeccCC
Q psy4112          55 YDFVIIGGGVGGSVVANRLSEN---PKWKVLLLESGE   88 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~---~~~~vl~lE~G~   88 (284)
                      |||||||+|++|+++|..|++.   .+.+|+|||+.+
T Consensus         1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~   37 (437)
T TIGR01989         1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVD   37 (437)
T ss_pred             CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCC
Confidence            7999999999999999999973   389999999953

This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.39  E-value=0.00017  Score=70.85  Aligned_cols=32  Identities=47%  Similarity=0.648  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEecc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLES   86 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~   86 (284)
                      +||+||||+|++|..+|.++++ .+.+|+|||.
T Consensus         3 ~~DvvVIG~GpaG~~AA~~aa~-~G~~V~liE~   34 (466)
T PRK06115          3 SYDVVIIGGGPGGYNAAIRAGQ-LGLKVACVEG   34 (466)
T ss_pred             cccEEEECCCHHHHHHHHHHHh-CCCeEEEEec
Confidence            5999999999999999999999 5999999996

>PRK05257 malate:quinone oxidoreductase; Validated

Probab=97.38  E-value=0.00017  Score=71.68  Aligned_cols=38  Identities=32%  Similarity=0.627  Sum_probs=33.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGED   89 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~   89 (284)
                      ...+|+||||+|..|+++|..|++. ++.+|+|||+...
T Consensus         3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~   41 (494)
T PRK05257          3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDG   41 (494)
T ss_pred             CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence            3569999999999999999999984 6889999998754

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=97.37  E-value=0.00021  Score=73.15  Aligned_cols=34  Identities=41%  Similarity=0.728  Sum_probs=31.8

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      .+||||||+|.+|+++|..|++ .+.+|+|||++.
T Consensus       260 ~~dVvIIGaGIaG~s~A~~La~-~G~~V~VlE~~~  293 (662)
T PRK01747        260 ARDAAIIGGGIAGAALALALAR-RGWQVTLYEADE  293 (662)
T ss_pred             CCCEEEECccHHHHHHHHHHHH-CCCeEEEEecCC
Confidence            5899999999999999999999 599999999985

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=97.37  E-value=0.0002  Score=72.02  Aligned_cols=35  Identities=31%  Similarity=0.573  Sum_probs=32.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ..||++|||+|+||+.+|..|++ .+.+|+|||++.
T Consensus         3 ~~yDVvIIGgGpAGL~AA~~lar-~g~~V~liE~~~   37 (555)
T TIGR03143         3 EIYDLIIIGGGPAGLSAGIYAGR-AKLDTLIIEKDD   37 (555)
T ss_pred             CcCcEEEECCCHHHHHHHHHHHH-CCCCEEEEecCC
Confidence            45999999999999999999999 599999999864

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=97.36  E-value=0.0002  Score=68.10  Aligned_cols=34  Identities=26%  Similarity=0.382  Sum_probs=31.3

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      .+|++|||+|++|+++|..|++ .+.+|+|+|+.+
T Consensus         1 ~~dV~IvGgG~~Gl~~A~~L~~-~G~~v~l~E~~~   34 (374)
T PRK06617          1 MSNTVILGCGLSGMLTALSFAQ-KGIKTTIFESKS   34 (374)
T ss_pred             CccEEEECCCHHHHHHHHHHHc-CCCeEEEecCCC
Confidence            3799999999999999999999 599999999874

>PRK06184 hypothetical protein; Provisional

Probab=97.36  E-value=0.00021  Score=70.64  Aligned_cols=37  Identities=24%  Similarity=0.379  Sum_probs=33.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      +++||+|||+|++|+++|..|++ .+.+|+|||+.+..
T Consensus         2 ~~~dVlIVGaGpaGl~~A~~La~-~Gi~v~viE~~~~~   38 (502)
T PRK06184          2 TTTDVLIVGAGPTGLTLAIELAR-RGVSFRLIEKAPEP   38 (502)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHH-CCCcEEEEeCCCCC
Confidence            46899999999999999999999 59999999997644

>PTZ00058 glutathione reductase; Provisional

Probab=97.36  E-value=0.00038  Score=70.17  Aligned_cols=35  Identities=43%  Similarity=0.680  Sum_probs=32.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      ..+||+||||+|++|..+|.++++ .+.+|+|||++
T Consensus        46 ~~~yDvvVIG~G~aG~~aA~~aa~-~G~~ValIEk~   80 (561)
T PTZ00058         46 RMVYDLIVIGGGSGGMAAARRAAR-NKAKVALVEKD   80 (561)
T ss_pred             CccccEEEECcCHHHHHHHHHHHH-cCCeEEEEecc
Confidence            357999999999999999999999 59999999975

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=97.35  E-value=0.00021  Score=71.63  Aligned_cols=35  Identities=31%  Similarity=0.613  Sum_probs=32.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      .++||||||+|.+|+++|..+++ .+.+|+|||+++
T Consensus         3 ~~~DVvVVG~G~AGl~AAl~Aa~-~G~~VivlEK~~   37 (549)
T PRK12834          3 MDADVIVVGAGLAGLVAAAELAD-AGKRVLLLDQEN   37 (549)
T ss_pred             ccCCEEEECcCHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence            56999999999999999999999 599999999988

>TIGR02053 MerA mercuric reductase

Probab=97.35  E-value=0.0002  Score=70.04  Aligned_cols=33  Identities=36%  Similarity=0.538  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ||+||||+|++|..+|.++++ .+.+|+|+|++.
T Consensus         1 yDvvVIGaGpaG~~aA~~aa~-~g~~v~lie~~~   33 (463)
T TIGR02053         1 YDLVIIGSGAAAFAAAIKAAE-LGASVAMVERGP   33 (463)
T ss_pred             CCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCc
Confidence            799999999999999999999 599999999853

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>PLN02576 protoporphyrinogen oxidase

Probab=97.35  E-value=0.00021  Score=70.30  Aligned_cols=38  Identities=29%  Similarity=0.411  Sum_probs=34.0

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCC-CCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENP-KWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~-~~~vl~lE~G~~~   90 (284)
                      ..++|+||||+|.+|+++|.+|++ . +.+|+|+|+....
T Consensus        10 ~~~~~v~IIGaGisGL~aA~~L~~-~~g~~v~vlEa~~rv   48 (496)
T PLN02576         10 ASSKDVAVVGAGVSGLAAAYALAS-KHGVNVLVTEARDRV   48 (496)
T ss_pred             cCCCCEEEECcCHHHHHHHHHHHH-hcCCCEEEEecCCCC
Confidence            556899999999999999999998 6 7999999998654

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=97.34  E-value=0.0002  Score=71.20  Aligned_cols=35  Identities=29%  Similarity=0.457  Sum_probs=32.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++||||||+| +|+++|.++++ .+.+|+|||+.+.
T Consensus         6 ~~~DVvVVG~G-aGl~aA~~aa~-~G~~V~vlEk~~~   40 (513)
T PRK12837          6 EEVDVLVAGSG-GGVAGAYTAAR-EGLSVALVEATDK   40 (513)
T ss_pred             CccCEEEECch-HHHHHHHHHHH-CCCcEEEEecCCC
Confidence            47999999999 99999999999 5999999998764

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=97.33  E-value=0.00024  Score=66.96  Aligned_cols=38  Identities=42%  Similarity=0.539  Sum_probs=33.9

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..++|+||||+|.+|+++|..|++ .+.+|+|+|++...
T Consensus         2 ~~~~~vvVIGgGi~Gls~A~~La~-~G~~V~vie~~~~~   39 (387)
T COG0665           2 SMKMDVVIIGGGIVGLSAAYYLAE-RGADVTVLEAGEAG   39 (387)
T ss_pred             CCcceEEEECCcHHHHHHHHHHHH-cCCEEEEEecCccC
Confidence            356999999999999999999999 48899999998743

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.33  E-value=0.00023  Score=69.71  Aligned_cols=34  Identities=35%  Similarity=0.594  Sum_probs=31.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      .+||+||||+|++|..+|.++++ .+.+|+|||++
T Consensus         3 ~~~DvvIIG~GpaG~~AA~~aa~-~G~~V~lie~~   36 (466)
T PRK07818          3 THYDVVVLGAGPGGYVAAIRAAQ-LGLKTAVVEKK   36 (466)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHh-CCCeEEEEecC
Confidence            35999999999999999999999 59999999986

>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional

Probab=97.33  E-value=0.00022  Score=72.62  Aligned_cols=39  Identities=28%  Similarity=0.285  Sum_probs=34.5

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ...++||||||+|.||+.+|.++++ .+.+|+|||++...
T Consensus        26 ~~~~~DVlVIG~G~AGl~AAi~Aa~-~G~~V~lveK~~~~   64 (617)
T PTZ00139         26 IDHTYDAVVVGAGGAGLRAALGLVE-LGYKTACISKLFPT   64 (617)
T ss_pred             cccccCEEEECccHHHHHHHHHHHH-cCCcEEEEeccCCC
Confidence            3457999999999999999999998 58999999998653

>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=97.32  E-value=0.00022  Score=68.19  Aligned_cols=33  Identities=33%  Similarity=0.467  Sum_probs=31.4

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      .+|++|||+|++|+++|..|++ .+++|+|||+-
T Consensus         2 ~~dV~IvGaG~aGl~lA~~L~~-~G~~V~l~E~~   34 (387)
T COG0654           2 MLDVAIVGAGPAGLALALALAR-AGLDVTLLERA   34 (387)
T ss_pred             CCCEEEECCCHHHHHHHHHHHh-CCCcEEEEccC
Confidence            5899999999999999999999 59999999998

>PRK07190 hypothetical protein; Provisional

Probab=97.32  E-value=0.00023  Score=70.47  Aligned_cols=37  Identities=22%  Similarity=0.244  Sum_probs=33.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..+||||||+|++|+++|..|++ .+.+|+|||+.+..
T Consensus         4 ~~~dVlIVGAGPaGL~lA~~Lar-~Gi~V~llEr~~~~   40 (487)
T PRK07190          4 QVTDVVIIGAGPVGLMCAYLGQL-CGLNTVIVDKSDGP   40 (487)
T ss_pred             ccceEEEECCCHHHHHHHHHHHH-cCCCEEEEeCCCcc
Confidence            45899999999999999999998 59999999998754

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=97.32  E-value=0.00022  Score=68.14  Aligned_cols=35  Identities=23%  Similarity=0.334  Sum_probs=32.6

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .+|++|||+|++|+++|..|++ .+.+|+|+|+.+.
T Consensus         2 ~~dV~IvGaGpaGl~~A~~L~~-~G~~v~v~E~~~~   36 (392)
T PRK08243          2 RTQVAIIGAGPAGLLLGQLLHL-AGIDSVVLERRSR   36 (392)
T ss_pred             cceEEEECCCHHHHHHHHHHHh-cCCCEEEEEcCCc
Confidence            4899999999999999999999 5999999999874

>PLN02268 probable polyamine oxidase

Probab=97.32  E-value=0.00024  Score=68.73  Aligned_cols=34  Identities=38%  Similarity=0.683  Sum_probs=31.6

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ++||||+|.+|+++|.+|.+ .+.+|+||||....
T Consensus         2 ~VvVIGaGisGL~aA~~L~~-~g~~v~vlEa~~r~   35 (435)
T PLN02268          2 SVIVIGGGIAGIAAARALHD-ASFKVTLLESRDRI   35 (435)
T ss_pred             CEEEECCCHHHHHHHHHHHh-CCCeEEEEeCCCCC
Confidence            79999999999999999998 59999999998765

>PRK07208 hypothetical protein; Provisional

Probab=97.30  E-value=0.00028  Score=69.10  Aligned_cols=38  Identities=29%  Similarity=0.362  Sum_probs=33.6

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ....|+||||+|.+|+++|.+|++ .+.+|+|+|+....
T Consensus         2 ~~~~~vvIiGaGisGL~aA~~L~~-~g~~v~v~E~~~~~   39 (479)
T PRK07208          2 TNKKSVVIIGAGPAGLTAAYELLK-RGYPVTVLEADPVV   39 (479)
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence            356799999999999999999999 59999999996644

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=97.30  E-value=0.00027  Score=69.58  Aligned_cols=35  Identities=20%  Similarity=0.282  Sum_probs=32.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      .+||+||||+|++|..+|.++++ .+.+|+|||+.+
T Consensus         3 ~~~DvvVIG~GpaG~~aA~~aa~-~G~~V~lie~~~   37 (471)
T PRK06467          3 IKTQVVVLGAGPAGYSAAFRAAD-LGLETVCVERYS   37 (471)
T ss_pred             ccceEEEECCCHHHHHHHHHHHH-CCCcEEEEecCC
Confidence            46999999999999999999999 599999999753

>PRK13748 putative mercuric reductase; Provisional

Probab=97.29  E-value=0.00026  Score=70.90  Aligned_cols=34  Identities=26%  Similarity=0.367  Sum_probs=31.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      .+||+||||+|++|+.+|.+|++ .+.+|+|||++
T Consensus        97 ~~~DvvVIG~GpaG~~aA~~~~~-~G~~v~lie~~  130 (561)
T PRK13748         97 RPLHVAVIGSGGAAMAAALKAVE-QGARVTLIERG  130 (561)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHh-CCCeEEEEecC
Confidence            46999999999999999999999 59999999986

>PRK06996 hypothetical protein; Provisional

Probab=97.29  E-value=0.00031  Score=67.34  Aligned_cols=38  Identities=24%  Similarity=0.489  Sum_probs=32.6

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcCC---CCeEEEeccCC
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSENP---KWKVLLLESGE   88 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~~---~~~vl~lE~G~   88 (284)
                      ....+|++|||+|++|+++|..|++..   +++|+|+|+..
T Consensus         8 ~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~   48 (398)
T PRK06996          8 AAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE   48 (398)
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCC
Confidence            356799999999999999999999842   35799999975

>PRK06834 hypothetical protein; Provisional

Probab=97.28  E-value=0.00027  Score=69.93  Aligned_cols=36  Identities=31%  Similarity=0.442  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++||||||+|++|+++|..|++ .+.+|+|||+.+.
T Consensus         2 ~~~dVlIVGaGp~Gl~lA~~La~-~G~~v~vlEr~~~   37 (488)
T PRK06834          2 TEHAVVIAGGGPTGLMLAGELAL-AGVDVAIVERRPN   37 (488)
T ss_pred             CcceEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence            35899999999999999999999 5999999998764

>PRK06847 hypothetical protein; Provisional

Probab=97.28  E-value=0.00031  Score=66.24  Aligned_cols=36  Identities=31%  Similarity=0.457  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      +..|++|||+|++|+++|..|++ .+.+|+|+|+...
T Consensus         3 ~~~~V~IVGaG~aGl~~A~~L~~-~g~~v~v~E~~~~   38 (375)
T PRK06847          3 AVKKVLIVGGGIGGLSAAIALRR-AGIAVDLVEIDPE   38 (375)
T ss_pred             CcceEEEECCCHHHHHHHHHHHh-CCCCEEEEecCCC
Confidence            45799999999999999999999 5999999998764

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=97.27  E-value=0.00028  Score=69.47  Aligned_cols=35  Identities=31%  Similarity=0.525  Sum_probs=32.1

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      -|+||||+|.+|+++|..|++ .+++|+|+|+....
T Consensus         2 ~dvvIIGaG~~GL~aa~~La~-~G~~v~vlE~~~~~   36 (492)
T TIGR02733         2 TSVVVIGAGIAGLTAAALLAK-RGYRVTLLEQHAQP   36 (492)
T ss_pred             CeEEEECcCHHHHHHHHHHHH-CCCeEEEEecCCCC
Confidence            589999999999999999999 59999999988654

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=97.27  E-value=0.00027  Score=68.59  Aligned_cols=34  Identities=29%  Similarity=0.347  Sum_probs=31.2

Q ss_pred             cEEEECCChHHHHHHHHHhcCCC-CeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPK-WKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~-~~vl~lE~G~~~   90 (284)
                      ||||||+|.+|+++|.++++ .+ .+|+|||+.+..
T Consensus         1 DVvVVG~G~AGl~AA~~aa~-~G~~~V~vlEk~~~~   35 (439)
T TIGR01813         1 DVVVVGSGFAGLSAALSAKK-AGAANVVLLEKMPVI   35 (439)
T ss_pred             CEEEECCCHHHHHHHHHHHH-cCCccEEEEecCCCC
Confidence            89999999999999999999 58 999999988653

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]

Probab=97.27  E-value=0.00029  Score=65.81  Aligned_cols=34  Identities=44%  Similarity=0.675  Sum_probs=30.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCe-EEEeccC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWK-VLLLESG   87 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~-vl~lE~G   87 (284)
                      +.||+||||+||+|+++|..+++ .+++ ++|+|.+
T Consensus         2 ~~~DviIIG~GPAGl~AAiya~r-~~l~~~li~~~~   36 (305)
T COG0492           2 KIYDVIIIGGGPAGLTAAIYAAR-AGLKVVLILEGG   36 (305)
T ss_pred             ceeeEEEECCCHHHHHHHHHHHH-cCCCcEEEEecC
Confidence            46999999999999999999999 5888 7777775

>PRK14694 putative mercuric reductase; Provisional

Probab=97.26  E-value=0.00028  Score=69.27  Aligned_cols=35  Identities=26%  Similarity=0.404  Sum_probs=32.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ..||+||||+|++|..+|.+|++ .+.+|+|+|++.
T Consensus         5 ~~~dviVIGaG~aG~~aA~~l~~-~g~~v~lie~~~   39 (468)
T PRK14694          5 NNLHIAVIGSGGSAMAAALKATE-RGARVTLIERGT   39 (468)
T ss_pred             CcCCEEEECCCHHHHHHHHHHHh-CCCcEEEEEccc
Confidence            46999999999999999999999 599999999874

>PTZ00383 malate:quinone oxidoreductase; Provisional

Probab=97.26  E-value=0.00032  Score=69.76  Aligned_cols=37  Identities=38%  Similarity=0.542  Sum_probs=32.8

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGE   88 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~   88 (284)
                      ..++||||||+|..|+++|..|++. +..+|+|||+..
T Consensus        43 ~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~   80 (497)
T PTZ00383         43 SDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRS   80 (497)
T ss_pred             CCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCc
Confidence            3569999999999999999999984 457999999985

>PRK13339 malate:quinone oxidoreductase; Reviewed

Probab=97.25  E-value=0.00029  Score=70.02  Aligned_cols=35  Identities=26%  Similarity=0.533  Sum_probs=31.9

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcC-CCCeEEEecc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLES   86 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~   86 (284)
                      ...+|+||||+|.+|+++|..|++. ++++|+|||+
T Consensus         4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr   39 (497)
T PRK13339          4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVER   39 (497)
T ss_pred             CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEc
Confidence            3568999999999999999999984 5799999999

>PRK06753 hypothetical protein; Provisional

Probab=97.25  E-value=0.0003  Score=66.33  Aligned_cols=34  Identities=35%  Similarity=0.548  Sum_probs=31.6

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      |+||||+|++|+++|..|++ .+.+|+|+|+.+..
T Consensus         2 ~V~IvGgG~aGl~~A~~L~~-~g~~v~v~E~~~~~   35 (373)
T PRK06753          2 KIAIIGAGIGGLTAAALLQE-QGHEVKVFEKNESV   35 (373)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCcc
Confidence            79999999999999999999 59999999999764

>PRK07588 hypothetical protein; Provisional

Probab=97.24  E-value=0.00031  Score=66.88  Aligned_cols=34  Identities=24%  Similarity=0.352  Sum_probs=31.4

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      |++|||+|++|+++|..|++ .+.+|+|+|+.+..
T Consensus         2 ~V~IVGgG~aGl~~A~~L~~-~G~~v~v~E~~~~~   35 (391)
T PRK07588          2 KVAISGAGIAGPTLAYWLRR-YGHEPTLIERAPEL   35 (391)
T ss_pred             eEEEECccHHHHHHHHHHHH-CCCceEEEeCCCCc
Confidence            79999999999999999999 59999999998654

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=97.24  E-value=0.00032  Score=69.04  Aligned_cols=33  Identities=39%  Similarity=0.628  Sum_probs=31.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEecc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLES   86 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~   86 (284)
                      .+||+||||+|++|+.+|.++++ .+.+|+|||+
T Consensus         3 ~~~DviIIG~G~aG~~aA~~~~~-~g~~v~lie~   35 (475)
T PRK06327          3 KQFDVVVIGAGPGGYVAAIRAAQ-LGLKVACIEA   35 (475)
T ss_pred             cceeEEEECCCHHHHHHHHHHHh-CCCeEEEEec
Confidence            46999999999999999999999 5999999998

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=97.23  E-value=0.00031  Score=67.74  Aligned_cols=34  Identities=35%  Similarity=0.549  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHhcCCC--CeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPK--WKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~--~~vl~lE~G~~~   90 (284)
                      +++|||+|.+|+++|..|++. +  .+|+|+|+....
T Consensus         2 ~v~IVGaGiaGL~aA~~L~~~-G~~~~V~vlEa~~~~   37 (451)
T PRK11883          2 KVAIIGGGITGLSAAYRLHKK-GPDADITLLEASDRL   37 (451)
T ss_pred             eEEEECCCHHHHHHHHHHHHh-CCCCCEEEEEcCCCC
Confidence            589999999999999999984 5  899999997643

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=97.23  E-value=0.00033  Score=68.03  Aligned_cols=37  Identities=30%  Similarity=0.467  Sum_probs=32.2

Q ss_pred             cccEEEECCChHHHHHHHHHhcCC---CCeEEEeccCCcc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENP---KWKVLLLESGEDE   90 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~---~~~vl~lE~G~~~   90 (284)
                      ..|+||||+|.+|+++|.+|++..   +.+|+|+|+....
T Consensus         2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~   41 (462)
T TIGR00562         2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRV   41 (462)
T ss_pred             CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcC
Confidence            369999999999999999999831   8999999997654

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=97.22  E-value=0.00033  Score=67.14  Aligned_cols=35  Identities=23%  Similarity=0.377  Sum_probs=32.4

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .+|++|||+|++|+++|..|++ .+.+|+|||+.+.
T Consensus         2 ~~dV~IVGaG~aGl~~A~~L~~-~G~~v~viE~~~~   36 (390)
T TIGR02360         2 KTQVAIIGAGPSGLLLGQLLHK-AGIDNVILERQSR   36 (390)
T ss_pred             CceEEEECccHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence            4799999999999999999999 6999999999874

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PTZ00367 squalene epoxidase; Provisional

Probab=97.21  E-value=0.00036  Score=70.45  Aligned_cols=35  Identities=43%  Similarity=0.745  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      .++|+||||+|++|+++|..|++ .+.+|+|||+..
T Consensus        32 ~~~dViIVGaGiaGlalA~aLar-~G~~V~VlEr~~   66 (567)
T PTZ00367         32 YDYDVIIVGGSIAGPVLAKALSK-QGRKVLMLERDL   66 (567)
T ss_pred             cCccEEEECCCHHHHHHHHHHHh-cCCEEEEEcccc
Confidence            46999999999999999999999 599999999976

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=97.20  E-value=0.00047  Score=68.85  Aligned_cols=38  Identities=34%  Similarity=0.395  Sum_probs=34.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ...+||+|||+|++|+++|..|++ .+.+|+|||+....
T Consensus         8 ~~~~dV~IVGaGp~Gl~lA~~L~~-~G~~v~v~Er~~~~   45 (538)
T PRK06183          8 AHDTDVVIVGAGPVGLTLANLLGQ-YGVRVLVLERWPTL   45 (538)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence            567999999999999999999999 59999999998754

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=97.20  E-value=0.00035  Score=66.84  Aligned_cols=33  Identities=24%  Similarity=0.379  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      |+||||+|.+|+++|.+|++ .+.+|+|||++..
T Consensus         2 ~v~IVG~Gi~Gls~A~~l~~-~g~~V~vle~~~~   34 (416)
T PRK00711          2 RVVVLGSGVIGVTSAWYLAQ-AGHEVTVIDRQPG   34 (416)
T ss_pred             EEEEECCcHHHHHHHHHHHH-CCCEEEEEeCCCc
Confidence            79999999999999999999 5999999999853

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=97.19  E-value=0.00039  Score=70.16  Aligned_cols=36  Identities=28%  Similarity=0.381  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++||||||+|.+|+++|.++++ .+.+|+|||+...
T Consensus         8 ~~~DVvVVG~G~aGl~AA~~aa~-~G~~v~llEk~~~   43 (574)
T PRK12842          8 LTCDVLVIGSGAGGLSAAITARK-LGLDVVVLEKEPV   43 (574)
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH-cCCeEEEEecCCC
Confidence            47999999999999999999999 5899999999865

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.18  E-value=0.00038  Score=70.50  Aligned_cols=37  Identities=24%  Similarity=0.382  Sum_probs=33.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ..++|+||||+|.+|+++|.++++ .+.+|+|||++..
T Consensus         9 ~~~~DVvVVG~G~AGl~AA~~aae-~G~~VivlEk~~~   45 (584)
T PRK12835          9 DREVDVLVVGSGGGGMTAALTAAA-RGLDTLVVEKSAH   45 (584)
T ss_pred             cCcCCEEEECccHHHHHHHHHHHH-CCCcEEEEEcCCC
Confidence            346999999999999999999999 5999999998864

>PRK08163 salicylate hydroxylase; Provisional

Probab=97.18  E-value=0.00044  Score=65.73  Aligned_cols=36  Identities=36%  Similarity=0.526  Sum_probs=32.8

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..|++|||+|++|+++|..|++ .+.+|+|+|+.+..
T Consensus         4 ~~~V~IvGaGiaGl~~A~~L~~-~g~~v~v~Er~~~~   39 (396)
T PRK08163          4 VTPVLIVGGGIGGLAAALALAR-QGIKVKLLEQAAEI   39 (396)
T ss_pred             CCeEEEECCcHHHHHHHHHHHh-CCCcEEEEeeCccc
Confidence            4799999999999999999999 59999999998653

>PRK07236 hypothetical protein; Provisional

Probab=97.17  E-value=0.00044  Score=65.88  Aligned_cols=36  Identities=33%  Similarity=0.507  Sum_probs=32.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ...|+||||+|++|+++|..|++ .+.+|+|+|+.+.
T Consensus         5 ~~~~ViIVGaG~aGl~~A~~L~~-~G~~v~v~E~~~~   40 (386)
T PRK07236          5 SGPRAVVIGGSLGGLFAALLLRR-AGWDVDVFERSPT   40 (386)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHh-CCCCEEEEecCCC
Confidence            45899999999999999999999 5999999998864

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.17  E-value=0.00037  Score=70.25  Aligned_cols=36  Identities=33%  Similarity=0.584  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++||||||+|.||+.+|.++++ .+.+|+|||++..
T Consensus         4 ~~~DVvVVG~G~AGl~AAl~Aae-~G~~V~lveK~~~   39 (566)
T PRK06452          4 IEYDAVVIGGGLAGLMSAHEIAS-AGFKVAVISKVFP   39 (566)
T ss_pred             ccCcEEEECccHHHHHHHHHHHH-CCCcEEEEEccCC
Confidence            45899999999999999999998 5999999998854

>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.17  E-value=0.0004  Score=70.34  Aligned_cols=36  Identities=31%  Similarity=0.363  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++||||||+|.||+.+|.++++ .+.+|+|||++..
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~Aa~-~G~~V~lleK~~~   41 (588)
T PRK08958          6 REFDAVVIGAGGAGMRAALQISQ-SGQSCALLSKVFP   41 (588)
T ss_pred             cccCEEEECccHHHHHHHHHHHH-cCCcEEEEEccCC
Confidence            46899999999999999999998 5999999999854

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.16  E-value=0.00037  Score=71.09  Aligned_cols=36  Identities=28%  Similarity=0.324  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++||||||+|.||+.+|.++++ .+.+|+|||++..
T Consensus         7 ~~~DVvVIG~G~AGl~AAl~Aae-~G~~V~lieK~~~   42 (626)
T PRK07803          7 HSYDVVVIGAGGAGLRAAIEARE-RGLRVAVVCKSLF   42 (626)
T ss_pred             eeecEEEECcCHHHHHHHHHHHH-CCCCEEEEeccCC
Confidence            46899999999999999999999 5999999999754

>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.16  E-value=0.00038  Score=70.64  Aligned_cols=36  Identities=22%  Similarity=0.323  Sum_probs=32.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++||||||+|.||+.+|.++++ .+.+|+|||++..
T Consensus        11 ~~~DVvVIG~G~AGl~AAl~Aa~-~G~~V~lveK~~~   46 (598)
T PRK09078         11 HKYDVVVVGAGGAGLRATLGMAE-AGLKTACITKVFP   46 (598)
T ss_pred             cccCEEEECccHHHHHHHHHHHH-cCCcEEEEEccCC
Confidence            46999999999999999999999 5899999999754

>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.16  E-value=0.00039  Score=70.48  Aligned_cols=36  Identities=25%  Similarity=0.368  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++||||||+|.||+.+|.++++ .+.+|+|||++..
T Consensus        11 ~~~DVlVIG~G~AGl~AAi~Aa~-~G~~V~vleK~~~   46 (591)
T PRK07057         11 RKFDVVIVGAGGSGMRASLQLAR-AGLSVAVLSKVFP   46 (591)
T ss_pred             ccCCEEEECccHHHHHHHHHHHH-CCCcEEEEeccCC
Confidence            46899999999999999999998 5899999999753

>PRK06175 L-aspartate oxidase; Provisional

Probab=97.15  E-value=0.00043  Score=67.54  Aligned_cols=36  Identities=31%  Similarity=0.457  Sum_probs=31.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++||||||+|.||+.+|..+.  .+.+|+|||+++..
T Consensus         3 ~~~DVvVVG~G~AGl~AA~~a~--~G~~V~lleK~~~~   38 (433)
T PRK06175          3 LYADVLIVGSGVAGLYSALNLR--KDLKILMVSKGKLN   38 (433)
T ss_pred             ccccEEEECchHHHHHHHHHhc--cCCCEEEEecCCCC
Confidence            4689999999999999999974  48999999998754

>PRK06854 adenylylsulfate reductase subunit alpha; Validated

Probab=97.15  E-value=0.0004  Score=70.62  Aligned_cols=37  Identities=38%  Similarity=0.570  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~   89 (284)
                      .++||||||+|.||+.+|.++++. ++.+|+|||++..
T Consensus        10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~   47 (608)
T PRK06854         10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI   47 (608)
T ss_pred             eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence            468999999999999999999983 3899999999864

>PRK07233 hypothetical protein; Provisional

Probab=97.13  E-value=0.00049  Score=65.84  Aligned_cols=34  Identities=29%  Similarity=0.576  Sum_probs=31.3

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ++||||+|.+|+++|..|++ .+.+|+|||+....
T Consensus         1 ~vvVIGaGiaGL~aA~~L~~-~G~~v~vlE~~~~~   34 (434)
T PRK07233          1 KIAIVGGGIAGLAAAYRLAK-RGHEVTVFEADDQL   34 (434)
T ss_pred             CEEEECCCHHHHHHHHHHHH-CCCcEEEEEeCCCC
Confidence            58999999999999999999 59999999999765

>PRK06126 hypothetical protein; Provisional

Probab=97.13  E-value=0.00048  Score=68.76  Aligned_cols=38  Identities=29%  Similarity=0.391  Sum_probs=33.9

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..++||+|||+|++|+++|..|++ .+++|+|||+.+..
T Consensus         5 ~~~~~VlIVGaGpaGL~~Al~La~-~G~~v~viEr~~~~   42 (545)
T PRK06126          5 TSETPVLIVGGGPVGLALALDLGR-RGVDSILVERKDGT   42 (545)
T ss_pred             CccCCEEEECCCHHHHHHHHHHHH-CCCcEEEEeCCCCC
Confidence            456999999999999999999999 59999999987643

>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=97.13  E-value=0.00058  Score=58.29  Aligned_cols=33  Identities=45%  Similarity=0.671  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      |++|||+|++|+.+|.+|++ .+.+|+++|..+.
T Consensus         1 ~vvIIGgG~aGl~aA~~l~~-~~~~v~ii~~~~~   33 (201)
T PF07992_consen    1 DVVIIGGGPAGLSAALELAR-PGAKVLIIEKSPG   33 (201)
T ss_dssp             EEEEESSSHHHHHHHHHHHH-TTSEEEEESSSSH
T ss_pred             CEEEEecHHHHHHHHHHHhc-CCCeEEEEecccc
Confidence            79999999999999999998 6999999987653

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....

>PTZ00052 thioredoxin reductase; Provisional

Probab=97.12  E-value=0.00045  Score=68.57  Aligned_cols=32  Identities=41%  Similarity=0.665  Sum_probs=30.3

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEecc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLES   86 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~   86 (284)
                      .||+||||+|++|..+|.++++ .+.+|+|||.
T Consensus         5 ~yDviVIG~GpaG~~AA~~aa~-~G~~V~lie~   36 (499)
T PTZ00052          5 MYDLVVIGGGSGGMAAAKEAAA-HGKKVALFDY   36 (499)
T ss_pred             ccCEEEECCCHHHHHHHHHHHh-CCCeEEEEec
Confidence            5999999999999999999999 5999999996

>KOG2415|consensus

Probab=97.11  E-value=0.00043  Score=66.73  Aligned_cols=39  Identities=33%  Similarity=0.498  Sum_probs=33.4

Q ss_pred             CCcccEEEECCChHHHHHHHHHhc-----CCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSE-----NPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~-----~~~~~vl~lE~G~~~   90 (284)
                      .+++|++|||+|++|+++|.||.+     +...+|+|+|.+...
T Consensus        74 ~e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~  117 (621)
T KOG2415|consen   74 SEEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEV  117 (621)
T ss_pred             hccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeecccc
Confidence            467999999999999999999976     246799999988654

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=97.11  E-value=0.00058  Score=69.81  Aligned_cols=40  Identities=28%  Similarity=0.428  Sum_probs=34.8

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      +.+++||+|||+|++|+++|..|++..+.+|+|||+.+..
T Consensus        29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~   68 (634)
T PRK08294         29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGR   68 (634)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCC
Confidence            3568999999999999999999998238999999988654

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=97.11  E-value=0.00052  Score=68.61  Aligned_cols=38  Identities=24%  Similarity=0.344  Sum_probs=34.3

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ...+||+|||+|++|+++|..|++ .+.+|+|||+.+..
T Consensus        21 ~~~~dVlIVGaGpaGl~lA~~L~~-~G~~v~viE~~~~~   58 (547)
T PRK08132         21 PARHPVVVVGAGPVGLALAIDLAQ-QGVPVVLLDDDDTL   58 (547)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHh-CCCcEEEEeCCCCC
Confidence            467999999999999999999999 59999999998743

>PLN02507 glutathione reductase

Probab=97.11  E-value=0.00046  Score=68.51  Aligned_cols=34  Identities=29%  Similarity=0.362  Sum_probs=31.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEecc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLES   86 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~   86 (284)
                      ..+||+||||+|++|..+|.++++ .+.+|+|||.
T Consensus        23 ~~~yDvvVIG~GpaG~~aA~~a~~-~G~~V~liE~   56 (499)
T PLN02507         23 HYDFDLFVIGAGSGGVRAARFSAN-FGAKVGICEL   56 (499)
T ss_pred             ccccCEEEECCCHHHHHHHHHHHH-CCCeEEEEec
Confidence            457999999999999999999999 5999999995

>PRK08275 putative oxidoreductase; Provisional

Probab=97.11  E-value=0.00047  Score=69.29  Aligned_cols=37  Identities=41%  Similarity=0.687  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~   89 (284)
                      .++||||||+|.||+.+|.++++. ++.+|+|||++..
T Consensus         8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~   45 (554)
T PRK08275          8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV   45 (554)
T ss_pred             EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence            458999999999999999999973 3689999999875

>TIGR02734 crtI_fam phytoene desaturase

Probab=97.11  E-value=0.00044  Score=68.25  Aligned_cols=33  Identities=33%  Similarity=0.530  Sum_probs=30.6

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          57 FVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      +||||+|.+|+++|..|++ .+.+|+|||+....
T Consensus         1 vvVIGaG~~GL~aA~~La~-~G~~V~VlE~~~~~   33 (502)
T TIGR02734         1 AVVIGAGFGGLALAIRLAA-AGIPVTVVEQRDKP   33 (502)
T ss_pred             CEEECcCHHHHHHHHHHHh-CCCcEEEEECCCCC
Confidence            5899999999999999999 59999999998765

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=97.10  E-value=0.00054  Score=58.74  Aligned_cols=32  Identities=38%  Similarity=0.535  Sum_probs=25.2

Q ss_pred             EEECCChHHHHHHHHHhcCCCCe-EEEeccCCcc
Q psy4112          58 VIIGGGVGGSVVANRLSENPKWK-VLLLESGEDE   90 (284)
Q Consensus        58 iivg~G~~g~~~a~~l~~~~~~~-vl~lE~G~~~   90 (284)
                      +|||+|++|+++|.+|.+. +.+ |+|||++...
T Consensus         1 ~IIGaG~aGl~~a~~l~~~-g~~~v~v~e~~~~~   33 (203)
T PF13738_consen    1 VIIGAGPAGLAAAAHLLER-GIDPVVVLERNDRP   33 (203)
T ss_dssp             EEE--SHHHHHHHHHHHHT-T---EEEEESSSSS
T ss_pred             CEECcCHHHHHHHHHHHhC-CCCcEEEEeCCCCC
Confidence            6999999999999999995 888 9999998654

...

>PRK08401 L-aspartate oxidase; Provisional

Probab=97.10  E-value=0.00051  Score=67.52  Aligned_cols=34  Identities=26%  Similarity=0.498  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      +||||||+|.+|+.+|.++++ .+.+|+|||++..
T Consensus         2 ~DVvVVGaG~AGl~AAi~aae-~G~~V~liek~~~   35 (466)
T PRK08401          2 MKVGIVGGGLAGLTAAISLAK-KGFDVTIIGPGIK   35 (466)
T ss_pred             CeEEEECccHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence            799999999999999999999 5999999999753

>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit

Probab=97.09  E-value=0.00049  Score=70.37  Aligned_cols=36  Identities=28%  Similarity=0.323  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++||||||+|.||+.+|.++++ .+.+|+|||++..
T Consensus        49 ~~~DVlVIG~G~AGl~AAl~Aae-~G~~VilveK~~~   84 (635)
T PLN00128         49 HTYDAVVVGAGGAGLRAAIGLSE-HGFNTACITKLFP   84 (635)
T ss_pred             eecCEEEECccHHHHHHHHHHHh-cCCcEEEEEcCCC
Confidence            46899999999999999999998 5899999999864

>TIGR01423 trypano_reduc trypanothione-disulfide reductase

Probab=97.09  E-value=0.00051  Score=68.04  Aligned_cols=33  Identities=27%  Similarity=0.506  Sum_probs=30.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCC-CCeEEEecc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENP-KWKVLLLES   86 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~-~~~vl~lE~   86 (284)
                      .+||+||||+|++|..+|.++++ . +.+|+|||+
T Consensus         2 ~~~DviVIG~G~~G~~aA~~aa~-~~g~~V~lie~   35 (486)
T TIGR01423         2 KAFDLVVIGAGSGGLEAGWNAAT-LYKKRVAVIDV   35 (486)
T ss_pred             CccCEEEECCChHHHHHHHHHHH-hcCCEEEEEec
Confidence            46999999999999999999998 4 799999997

Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.

>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.07  E-value=0.00051  Score=69.35  Aligned_cols=37  Identities=30%  Similarity=0.484  Sum_probs=32.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~   89 (284)
                      .++||||||+|.+|+.+|.++++. ++.+|+|||++..
T Consensus         2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~   39 (575)
T PRK05945          2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP   39 (575)
T ss_pred             CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence            358999999999999999999973 3589999999864

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.05  E-value=0.00064  Score=68.42  Aligned_cols=36  Identities=28%  Similarity=0.542  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++|+||||+|.+|+++|.++++ .+.+|+|||+...
T Consensus         5 ~~~DvvIiG~G~aGl~aA~~~a~-~G~~v~liEk~~~   40 (557)
T PRK12844          5 ETYDVVVVGSGGGGMCAALAAAD-SGLEPLIVEKQDK   40 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence            47999999999999999999999 5999999998653

>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.04  E-value=0.00072  Score=69.20  Aligned_cols=35  Identities=23%  Similarity=0.522  Sum_probs=31.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      .++||||||+|.||+.+|.++++ .+.+|+|||...
T Consensus        34 ~~~DVlVVG~G~AGl~AAi~Aae-~G~~VilieK~~   68 (640)
T PRK07573         34 RKFDVIVVGTGLAGASAAATLGE-LGYNVKVFCYQD   68 (640)
T ss_pred             cccCEEEECccHHHHHHHHHHHH-cCCcEEEEecCC
Confidence            46899999999999999999998 599999999754

>PRK07538 hypothetical protein; Provisional

Probab=97.04  E-value=0.00062  Score=65.49  Aligned_cols=34  Identities=29%  Similarity=0.560  Sum_probs=31.2

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      |++|||+|++|+++|..|++ .+.+|+|+|+.+..
T Consensus         2 dV~IVGaG~aGl~~A~~L~~-~G~~v~v~E~~~~~   35 (413)
T PRK07538          2 KVLIAGGGIGGLTLALTLHQ-RGIEVVVFEAAPEL   35 (413)
T ss_pred             eEEEECCCHHHHHHHHHHHh-CCCcEEEEEcCCcc
Confidence            89999999999999999999 59999999998643

>PLN02676 polyamine oxidase

Probab=97.04  E-value=0.0014  Score=64.85  Aligned_cols=38  Identities=29%  Similarity=0.467  Sum_probs=33.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCC-eEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKW-KVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~-~vl~lE~G~~~   90 (284)
                      ...+|+||||+|.+|+++|.+|++. +. +|+|||+....
T Consensus        24 ~~~~~v~IIGaG~sGL~aa~~L~~~-g~~~v~vlE~~~~~   62 (487)
T PLN02676         24 KPSPSVIIVGAGMSGISAAKTLSEA-GIEDILILEATDRI   62 (487)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHHc-CCCcEEEecCCCCC
Confidence            3468999999999999999999994 76 69999998754

>PRK08626 fumarate reductase flavoprotein subunit; Provisional

Probab=97.04  E-value=0.00058  Score=70.11  Aligned_cols=37  Identities=22%  Similarity=0.263  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++||||||+|.||+.+|.++++ .+.+|+|||+.+..
T Consensus         4 ~~~DVlVIG~G~AGl~AAi~Aae-~G~~VivleK~~~~   40 (657)
T PRK08626          4 IYTDALVIGAGLAGLRVAIAAAQ-RGLDTIVLSLVPAK   40 (657)
T ss_pred             eeccEEEECccHHHHHHHHHHHH-cCCCEEEEeCCCCC
Confidence            36899999999999999999999 59999999987643

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=97.04  E-value=0.00059  Score=68.59  Aligned_cols=33  Identities=21%  Similarity=0.324  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ||||||+|.+|+.+|..+++ .+.+|+|||++..
T Consensus         1 DVlVVG~G~AGl~AA~~aae-~G~~V~lleK~~~   33 (566)
T TIGR01812         1 DVVIVGAGLAGLRAAVEAAK-AGLNTAVISKVYP   33 (566)
T ss_pred             CEEEECccHHHHHHHHHHHH-CCCcEEEEeccCC
Confidence            89999999999999999999 5999999999764

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>PRK10262 thioredoxin reductase; Provisional

Probab=97.04  E-value=0.00068  Score=62.94  Aligned_cols=35  Identities=17%  Similarity=0.284  Sum_probs=31.3

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      ...+|++|||+|++|+.+|..|++ .+.+|+++|..
T Consensus         4 ~~~~~vvIIGgGpaGl~aA~~l~~-~g~~~~~ie~~   38 (321)
T PRK10262          4 TKHSKLLILGSGPAGYTAAVYAAR-ANLQPVLITGM   38 (321)
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHH-CCCCeEEEEee
Confidence            457999999999999999999999 48899999854

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.03  E-value=0.00064  Score=68.91  Aligned_cols=35  Identities=20%  Similarity=0.320  Sum_probs=31.7

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .+||||||+|.||+.+|.++++ .+.+|+|||++..
T Consensus         3 ~~DVlVVG~G~AGl~AAi~Aa~-~G~~V~lieK~~~   37 (589)
T PRK08641          3 KGKVIVVGGGLAGLMATIKAAE-AGVHVDLFSLVPV   37 (589)
T ss_pred             CccEEEECchHHHHHHHHHHHH-cCCcEEEEEccCC
Confidence            4699999999999999999998 5999999998764

>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.03  E-value=0.00059  Score=68.37  Aligned_cols=35  Identities=29%  Similarity=0.309  Sum_probs=31.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++||||||+|.||+.+|.++ + .+.+|+|||++..
T Consensus         6 ~~~DVlVVG~G~AGl~AAi~A-~-~G~~VilleK~~~   40 (543)
T PRK06263          6 MITDVLIIGSGGAGARAAIEA-E-RGKNVVIVSKGLF   40 (543)
T ss_pred             eccCEEEECccHHHHHHHHHH-h-cCCCEEEEEccCC
Confidence            358999999999999999999 7 5999999999864

>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=97.02  E-value=0.00059  Score=68.88  Aligned_cols=36  Identities=28%  Similarity=0.460  Sum_probs=32.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCC---CeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPK---WKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~---~~vl~lE~G~~   89 (284)
                      .++||||||+|.||+.+|.++++. +   .+|+|||++..
T Consensus         4 ~~~DVlVVG~G~AGl~AA~~Aa~~-G~~~~~V~lleK~~~   42 (577)
T PRK06069          4 LKYDVVIVGSGLAGLRAAVAAAER-SGGKLSVAVVSKTQP   42 (577)
T ss_pred             eecCEEEECccHHHHHHHHHHHHh-CCCCCcEEEEEcccC
Confidence            358999999999999999999984 5   89999998864

>PRK07395 L-aspartate oxidase; Provisional

Probab=97.02  E-value=0.00076  Score=67.90  Aligned_cols=38  Identities=24%  Similarity=0.417  Sum_probs=32.9

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ...++||||||+|.||+.+|.++++  +.+|+|||+++..
T Consensus         6 ~~~e~DVlVVG~G~AGl~AAi~A~~--G~~V~lieK~~~~   43 (553)
T PRK07395          6 LPSQFDVLVVGSGAAGLYAALCLPS--HLRVGLITKDTLK   43 (553)
T ss_pred             ccccCCEEEECccHHHHHHHHHhhc--CCCEEEEEccCCC
Confidence            3567999999999999999999863  8899999998653

>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated

Probab=97.01  E-value=0.0007  Score=66.00  Aligned_cols=34  Identities=32%  Similarity=0.626  Sum_probs=31.6

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      +||+||||+|.+|+++|..|++ .+.+|+|||+|.
T Consensus         2 ~~DviIIG~G~aGl~aA~~la~-~g~~v~vi~~~~   35 (422)
T PRK05329          2 KFDVLVIGGGLAGLTAALAAAE-AGKRVALVAKGQ   35 (422)
T ss_pred             CCCEEEECccHHHHHHHHHHHH-CCCcEEEEECCC
Confidence            4899999999999999999999 599999999874

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=97.01  E-value=0.00083  Score=67.76  Aligned_cols=37  Identities=24%  Similarity=0.335  Sum_probs=32.7

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ...++|+||||+| +|+++|...++ .+.+|+|||+.+.
T Consensus        13 ~d~e~DvvvvG~G-~G~~aA~~a~~-~G~~v~v~Ek~~~   49 (564)
T PRK12845         13 RDTTVDLLVVGSG-TGMAAALAAHE-LGLSVLIVEKSSY   49 (564)
T ss_pred             CCceeCEEEECCc-HHHHHHHHHHH-CCCcEEEEecCCC
Confidence            3568999999999 89999999998 5999999998754

>PLN02546 glutathione reductase

Probab=97.01  E-value=0.00066  Score=68.43  Aligned_cols=33  Identities=24%  Similarity=0.320  Sum_probs=30.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEecc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLES   86 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~   86 (284)
                      .+||+||||+|++|..+|.++++ .+.+|+|+|.
T Consensus        78 ~~yDvvVIG~GpaG~~aA~~aa~-~G~~V~liE~  110 (558)
T PLN02546         78 YDFDLFTIGAGSGGVRASRFASN-FGASAAVCEL  110 (558)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH-CCCeEEEEec
Confidence            36999999999999999999999 5999999995

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=97.00  E-value=0.00072  Score=65.88  Aligned_cols=38  Identities=47%  Similarity=0.735  Sum_probs=33.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~   90 (284)
                      .+|||+|||+|..|+++|..|++- |.++|+|||+-...
T Consensus         2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~   40 (429)
T COG0579           2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGV   40 (429)
T ss_pred             CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCcc
Confidence            469999999999999999999995 44999999987654

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=96.99  E-value=0.00081  Score=65.32  Aligned_cols=38  Identities=26%  Similarity=0.478  Sum_probs=34.8

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ....|+||||+|.+|+++|..|.+ .+.+|+|||+.+..
T Consensus         5 ~~~~~viivGaGlaGL~AA~eL~k-aG~~v~ilEar~r~   42 (450)
T COG1231           5 PKTADVIIVGAGLAGLSAAYELKK-AGYQVQILEARDRV   42 (450)
T ss_pred             CCCCcEEEECCchHHHHHHHHHhh-cCcEEEEEeccCCc
Confidence            567999999999999999999999 59999999998764

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=96.97  E-value=0.00085  Score=61.47  Aligned_cols=35  Identities=29%  Similarity=0.468  Sum_probs=31.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .+++|||+|++|+++|..|.+ .+.+|+|+|+|.-.
T Consensus         2 ~siaIVGaGiAGl~aA~~L~~-aG~~vtV~eKg~Gv   36 (331)
T COG3380           2 PSIAIVGAGIAGLAAAYALRE-AGREVTVFEKGRGV   36 (331)
T ss_pred             CcEEEEccchHHHHHHHHHHh-cCcEEEEEEcCCCc
Confidence            468999999999999999999 69999999999754

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=96.95  E-value=0.0011  Score=65.41  Aligned_cols=38  Identities=24%  Similarity=0.431  Sum_probs=33.6

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ....+++|||+|++|+++|..|.+ .+.+|+|+|++...
T Consensus         8 ~~~~~VaIIGAG~aGL~aA~~l~~-~G~~v~vfE~~~~v   45 (461)
T PLN02172          8 INSQHVAVIGAGAAGLVAARELRR-EGHTVVVFEREKQV   45 (461)
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHh-cCCeEEEEecCCCC
Confidence            446899999999999999999999 59999999997644

>PRK05868 hypothetical protein; Validated

Probab=96.95  E-value=0.00092  Score=63.68  Aligned_cols=35  Identities=23%  Similarity=0.326  Sum_probs=31.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      -|++|||+|++|+++|..|++ .+.+|+|+|+.+..
T Consensus         2 ~~V~IvGgG~aGl~~A~~L~~-~G~~v~viE~~~~~   36 (372)
T PRK05868          2 KTVVVSGASVAGTAAAYWLGR-HGYSVTMVERHPGL   36 (372)
T ss_pred             CeEEEECCCHHHHHHHHHHHh-CCCCEEEEcCCCCC
Confidence            389999999999999999999 59999999998754

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=96.95  E-value=0.00089  Score=67.38  Aligned_cols=36  Identities=28%  Similarity=0.513  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++|++|||+|.+|+++|.++++ .+.+|+|||+.+.
T Consensus         6 ~~~DvvVvG~G~aG~~aA~~aa~-~G~~v~llEk~~~   41 (557)
T PRK07843          6 QEYDVVVVGSGAAGMVAALTAAH-RGLSTVVVEKAPH   41 (557)
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH-CCCCEEEEeCCCC
Confidence            46999999999999999999999 5999999999754

>COG3573 Predicted oxidoreductase [General function prediction only]

Probab=96.94  E-value=0.001  Score=62.67  Aligned_cols=39  Identities=28%  Similarity=0.528  Sum_probs=34.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCccc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDEN   91 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~   91 (284)
                      ..++|+||||+|.+|+++|.+|++ .+++|++||.-+..+
T Consensus         3 ~~~~dvivvgaglaglvaa~elA~-aG~~V~ildQEgeqn   41 (552)
T COG3573           3 GLTADVIVVGAGLAGLVAAAELAD-AGKRVLILDQEGEQN   41 (552)
T ss_pred             cccccEEEECccHHHHHHHHHHHh-cCceEEEEccccccc
Confidence            346999999999999999999999 699999999876543

>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=96.94  E-value=0.0008  Score=68.07  Aligned_cols=35  Identities=26%  Similarity=0.299  Sum_probs=31.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++||||||+|.+|+.+|.++++ . .+|+|||++..
T Consensus         4 ~~~DVlVIG~G~AGl~AAl~aa~-~-~~VilleK~~~   38 (583)
T PRK08205          4 HRYDVVIVGAGGAGMRAAIEAGP-R-ARTAVLTKLYP   38 (583)
T ss_pred             eeccEEEECccHHHHHHHHHHHh-C-CCEEEEeCCCC
Confidence            46899999999999999999997 4 89999999854

>PRK12839 hypothetical protein; Provisional

Probab=96.92  E-value=0.0011  Score=67.12  Aligned_cols=37  Identities=32%  Similarity=0.484  Sum_probs=33.4

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ..++|+||||+|.+|+++|..+++ .+.+|+|||++..
T Consensus         6 ~~~~dv~ViG~G~aG~~aa~~~~~-~g~~v~~iek~~~   42 (572)
T PRK12839          6 THTYDVVVVGSGAGGLSAAVAAAY-GGAKVLVVEKAST   42 (572)
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence            457999999999999999999999 5899999998754

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=96.92  E-value=0.00097  Score=65.56  Aligned_cols=36  Identities=47%  Similarity=0.708  Sum_probs=32.7

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ..+||+||||+|++|.++|.++++. +.+|+++|+++
T Consensus         2 ~~~yDvvVIG~GpaG~~aA~raa~~-G~kvalvE~~~   37 (454)
T COG1249           2 MKEYDVVVIGAGPAGYVAAIRAAQL-GLKVALVEKGE   37 (454)
T ss_pred             CccccEEEECCCHHHHHHHHHHHhC-CCCEEEEeecC
Confidence            3579999999999999999999994 77799999995

>PLN02815 L-aspartate oxidase

Probab=96.91  E-value=0.001  Score=67.56  Aligned_cols=37  Identities=27%  Similarity=0.486  Sum_probs=32.7

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..++||||||+|.||+.+|.++++ .+ +|+|||++...
T Consensus        27 ~~~~DVlVVG~G~AGl~AAl~Aae-~G-~VvlleK~~~~   63 (594)
T PLN02815         27 TKYFDFLVIGSGIAGLRYALEVAE-YG-TVAIITKDEPH   63 (594)
T ss_pred             ccccCEEEECccHHHHHHHHHHhh-CC-CEEEEECCCCC
Confidence            456899999999999999999998 47 89999998753

>TIGR00551 nadB L-aspartate oxidase

Probab=96.90  E-value=0.00096  Score=65.95  Aligned_cols=34  Identities=29%  Similarity=0.451  Sum_probs=30.7

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ++||||||+|.||+.+|..+++ .+. |+|||++..
T Consensus         2 ~~DVlVVG~G~AGl~AA~~aa~-~G~-V~lleK~~~   35 (488)
T TIGR00551         2 SCDVVVIGSGAAGLSAALALAD-QGR-VIVLSKAPV   35 (488)
T ss_pred             CccEEEECccHHHHHHHHHHHh-CCC-EEEEEccCC
Confidence            5899999999999999999998 476 999999864

L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=96.90  E-value=0.00098  Score=65.03  Aligned_cols=35  Identities=29%  Similarity=0.401  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHhcC-----CCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSEN-----PKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~-----~~~~vl~lE~G~~~   90 (284)
                      ++||||+|.+|+++|++|++.     .+.+|+|||+....
T Consensus         3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~   42 (463)
T PRK12416          3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYL   42 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCc
Confidence            689999999999999999973     14799999998654

>PTZ00153 lipoamide dehydrogenase; Provisional

Probab=96.89  E-value=0.00095  Score=68.54  Aligned_cols=33  Identities=42%  Similarity=0.622  Sum_probs=31.1

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      +||+||||+|++|..+|.++++ .+.+|+|||.+
T Consensus       116 ~yDviVIG~G~gG~~aA~~aa~-~G~kV~lie~~  148 (659)
T PTZ00153        116 EYDVGIIGCGVGGHAAAINAME-RGLKVIIFTGD  148 (659)
T ss_pred             cCCEEEECCCHHHHHHHHHHHH-CCCcEEEEeCC
Confidence            7999999999999999999999 59999999964

>PRK09077 L-aspartate oxidase; Provisional

Probab=96.89  E-value=0.00089  Score=67.05  Aligned_cols=37  Identities=35%  Similarity=0.503  Sum_probs=32.4

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..++||||||+|.||+.+|.++++ . .+|+|||++...
T Consensus         6 ~~~~DVlVVG~G~AGl~AA~~aa~-~-~~VilveK~~~~   42 (536)
T PRK09077          6 EHQCDVLIIGSGAAGLSLALRLAE-H-RRVAVLSKGPLS   42 (536)
T ss_pred             cccCCEEEECchHHHHHHHHHHHH-C-CCEEEEeccCCC
Confidence            346899999999999999999998 3 799999998753

>PRK14727 putative mercuric reductase; Provisional

Probab=96.86  E-value=0.0012  Score=65.12  Aligned_cols=36  Identities=22%  Similarity=0.323  Sum_probs=32.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ...||+||||+|++|..+|.+|++ .+.+|+|+|++.
T Consensus        14 ~~~~dvvvIG~G~aG~~~a~~~~~-~g~~v~~ie~~~   49 (479)
T PRK14727         14 KLQLHVAIIGSGSAAFAAAIKAAE-HGARVTIIEGAD   49 (479)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHh-CCCeEEEEEccC
Confidence            346999999999999999999999 599999999873

>PRK09231 fumarate reductase flavoprotein subunit; Validated

Probab=96.85  E-value=0.001  Score=67.33  Aligned_cols=37  Identities=30%  Similarity=0.365  Sum_probs=32.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~   89 (284)
                      .++||||||+|.||+.+|.++++. ++.+|+|||++..
T Consensus         3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~   40 (582)
T PRK09231          3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYP   40 (582)
T ss_pred             eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCC
Confidence            358999999999999999999974 3579999999854

>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed

Probab=96.84  E-value=0.0012  Score=64.27  Aligned_cols=35  Identities=29%  Similarity=0.289  Sum_probs=31.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      -||+|||+|.+|+.+|..|++ .+.+|+|+|+.+..
T Consensus         3 ~dVvVIGGGlAGleAAlaLAr-~Gl~V~LiE~rp~~   37 (436)
T PRK05335          3 KPVNVIGAGLAGSEAAWQLAK-RGVPVELYEMRPVK   37 (436)
T ss_pred             CcEEEECCCHHHHHHHHHHHh-CCCcEEEEEccCcc
Confidence            489999999999999999999 59999999987654

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=96.83  E-value=0.0013  Score=64.35  Aligned_cols=39  Identities=26%  Similarity=0.422  Sum_probs=34.4

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcCCCCe-EEEeccCCcc
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSENPKWK-VLLLESGEDE   90 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~-vl~lE~G~~~   90 (284)
                      ..+.+|++|||+|.+|+.+|.+|.+ .+.. ++|+|+....
T Consensus         5 ~~~~~~v~IIGaG~sGlaaa~~L~~-~g~~~~~i~Ek~~~~   44 (443)
T COG2072           5 VATHTDVAIIGAGQSGLAAAYALKQ-AGVPDFVIFEKRDDV   44 (443)
T ss_pred             cCCcccEEEECCCHHHHHHHHHHHH-cCCCcEEEEEccCCc
Confidence            4567999999999999999999999 4777 9999999743

>PLN02568 polyamine oxidase

Probab=96.82  E-value=0.0014  Score=65.73  Aligned_cols=38  Identities=29%  Similarity=0.533  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCC----CCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENP----KWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~----~~~vl~lE~G~~~   90 (284)
                      ...|+||||+|.+|+++|.+|++..    +.+|+|+|+....
T Consensus         4 ~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~   45 (539)
T PLN02568          4 KKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRI   45 (539)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCc
Confidence            4579999999999999999999741    3899999997754

>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein

Probab=96.81  E-value=0.0012  Score=65.26  Aligned_cols=32  Identities=41%  Similarity=0.762  Sum_probs=30.3

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEecc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLES   86 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~   86 (284)
                      +||+||||+|++|..+|.++++ .+.+|+|||+
T Consensus         2 ~yDvvVIG~G~aG~~aA~~aa~-~G~~v~lie~   33 (484)
T TIGR01438         2 DYDLIVIGGGSGGLAAAKEAAD-YGAKVMLLDF   33 (484)
T ss_pred             ccCEEEECCCHHHHHHHHHHHH-CCCeEEEEec
Confidence            4899999999999999999999 5999999996

This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.

>PRK08071 L-aspartate oxidase; Provisional

Probab=96.80  E-value=0.0012  Score=65.76  Aligned_cols=35  Identities=26%  Similarity=0.559  Sum_probs=31.5

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ++||||||+|.||+.+|.++++  +.+|+|||++...
T Consensus         3 ~~DVlVVG~G~AGl~AAl~a~~--g~~V~lveK~~~~   37 (510)
T PRK08071          3 SADVIIIGSGIAALTVAKELCH--EYNVIIITKKTKR   37 (510)
T ss_pred             ccCEEEECccHHHHHHHHHhhc--CCCEEEEeccCCC
Confidence            6899999999999999999875  7899999998753

>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit

Probab=96.79  E-value=0.0013  Score=67.02  Aligned_cols=33  Identities=33%  Similarity=0.591  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHh----cCCCCeEEEeccCCc
Q psy4112          56 DFVIIGGGVGGSVVANRLS----ENPKWKVLLLESGED   89 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~----~~~~~~vl~lE~G~~   89 (284)
                      ||||||+|.||+.+|.+++    + .+.+|+|||++..
T Consensus         1 DVlVIGsG~AGL~AAl~Aa~~~~e-~G~~VilieK~~~   37 (614)
T TIGR02061         1 DLLIVGGGMGGCGAAFEAVYWGDK-KGLKIVLVEKANL   37 (614)
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhh-CCCeEEEEEccCC
Confidence            8999999999999999998    5 5899999999864

During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.

>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit

Probab=96.76  E-value=0.0012  Score=66.72  Aligned_cols=36  Identities=28%  Similarity=0.360  Sum_probs=31.8

Q ss_pred             cccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGED   89 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~   89 (284)
                      ++||||||+|.||+.+|..+++. ++.+|+|||++..
T Consensus         3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~   39 (580)
T TIGR01176         3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYP   39 (580)
T ss_pred             ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCC
Confidence            58999999999999999999974 3589999999764

The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=96.76  E-value=0.0014  Score=69.66  Aligned_cols=36  Identities=36%  Similarity=0.544  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++|+||||+|.+|+.+|..+++ .+.+|+|||++..
T Consensus        12 ~~~DVlVVG~G~AGl~AAl~Aa~-~G~~V~lleK~~~   47 (897)
T PRK13800         12 LDCDVLVIGGGTAGTMAALTAAE-HGANVLLLEKAHV   47 (897)
T ss_pred             eecCEEEECcCHHHHHHHHHHHH-CCCeEEEEecccc
Confidence            46899999999999999999998 5999999999874

>TIGR02731 phytoene_desat phytoene desaturase

Probab=96.73  E-value=0.0016  Score=63.29  Aligned_cols=34  Identities=24%  Similarity=0.372  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      +++|||+|.+|+++|.+|++ .+.+|+|+|+.+..
T Consensus         1 ~v~IiGaG~aGl~aA~~L~~-~G~~v~vlE~~~~~   34 (453)
T TIGR02731         1 RVAIAGAGLAGLSCAKYLAD-AGHTPIVLEARDVL   34 (453)
T ss_pred             CEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence            48999999999999999999 59999999998643

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=96.71  E-value=0.0017  Score=64.66  Aligned_cols=34  Identities=21%  Similarity=0.419  Sum_probs=31.1

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEecc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLES   86 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~   86 (284)
                      ...||++|||+|++|+.+|..|++ .+.+|+|+|.
T Consensus       209 ~~~~dvvIIGgGpaGl~aA~~la~-~G~~v~li~~  242 (517)
T PRK15317        209 KDPYDVLVVGGGPAGAAAAIYAAR-KGIRTGIVAE  242 (517)
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEec
Confidence            446999999999999999999999 5999999986

>PRK06475 salicylate hydroxylase; Provisional

Probab=96.71  E-value=0.0018  Score=62.05  Aligned_cols=34  Identities=29%  Similarity=0.510  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      -+++|||+|++|+++|..|++ .+.+|.|+|+.+.
T Consensus         3 ~~V~IvGgGiaGl~~A~~L~~-~G~~V~i~E~~~~   36 (400)
T PRK06475          3 GSPLIAGAGVAGLSAALELAA-RGWAVTIIEKAQE   36 (400)
T ss_pred             CcEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCc
Confidence            468999999999999999999 6999999998764

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=96.70  E-value=0.0016  Score=64.77  Aligned_cols=34  Identities=24%  Similarity=0.520  Sum_probs=30.9

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEecc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLES   86 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~   86 (284)
                      ...||++|||+|++|+.+|..|++ .+.+|+|+|.
T Consensus       210 ~~~~dVvIIGgGpAGl~AA~~la~-~G~~v~li~~  243 (515)
T TIGR03140       210 LDPYDVLVVGGGPAGAAAAIYAAR-KGLRTAMVAE  243 (515)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEec
Confidence            346999999999999999999999 6999999975

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=96.66  E-value=0.0017  Score=70.76  Aligned_cols=37  Identities=24%  Similarity=0.369  Sum_probs=33.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..+||||||+|.||+++|.+.++ .+.+|+|||+++..
T Consensus       408 ~~~DVvVVG~G~AGl~AAi~Aae-~Ga~VivlEK~~~~  444 (1167)
T PTZ00306        408 LPARVIVVGGGLAGCSAAIEAAS-CGAQVILLEKEAKL  444 (1167)
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEEccCCC
Confidence            45899999999999999999999 59999999998654

>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]

Probab=96.66  E-value=0.0019  Score=64.36  Aligned_cols=38  Identities=34%  Similarity=0.658  Sum_probs=35.0

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..++|+||||||..|+-+|..++. .+++|+|+|++..-
T Consensus        10 ~~~~DviVIGGGitG~GiArDaA~-RGl~v~LvE~~D~A   47 (532)
T COG0578          10 MEEFDVIVIGGGITGAGIARDAAG-RGLKVALVEKGDLA   47 (532)
T ss_pred             ccCCCEEEECCchhhHHHHHHHHh-CCCeEEEEecCccc
Confidence            378999999999999999999999 69999999999754

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=96.64  E-value=0.0021  Score=64.97  Aligned_cols=37  Identities=27%  Similarity=0.313  Sum_probs=33.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ..++|+||||+|.+|+.+|..+++ .+.+|+|||+...
T Consensus        10 ~~~~dvvvvG~G~aG~~aa~~~~~-~g~~v~~iek~~~   46 (581)
T PRK06134         10 DLECDVLVIGSGAAGLSAAVTAAW-HGLKVIVVEKDPV   46 (581)
T ss_pred             CCccCEEEECcCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence            457999999999999999999999 5999999998653

>KOG3855|consensus

Probab=96.64  E-value=0.0025  Score=61.40  Aligned_cols=49  Identities=37%  Similarity=0.532  Sum_probs=37.5

Q ss_pred             ccccccCCCC-CCCcccEEEECCChHHHHHHHHHhcC---CCCeEEEeccCCc
Q psy4112          41 RENIFLGNKP-ILSEYDFVIIGGGVGGSVVANRLSEN---PKWKVLLLESGED   89 (284)
Q Consensus        41 ~~~~~~~~~~-~~~~~d~iivg~G~~g~~~a~~l~~~---~~~~vl~lE~G~~   89 (284)
                      .+..+|.... ....||++|||+|+.|..+|..|..+   ..+||+++|+|..
T Consensus        22 ~~~~~~s~~~~~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s   74 (481)
T KOG3855|consen   22 DTRRTASAKSTDTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS   74 (481)
T ss_pred             ccccccccccCCcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence            3444453333 34489999999999999999999976   3579999999943

>PRK12843 putative FAD-binding dehydrogenase; Reviewed

Probab=96.64  E-value=0.0028  Score=64.12  Aligned_cols=37  Identities=35%  Similarity=0.459  Sum_probs=32.9

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ..++|+||||+|.+|+.+|..+++ .+.+|+|||+...
T Consensus        14 ~~~~dvvvvG~G~aG~~aa~~~~~-~g~~v~l~ek~~~   50 (578)
T PRK12843         14 DAEFDVIVIGAGAAGMSAALFAAI-AGLKVLLVERTEY   50 (578)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence            447899999999999999999998 5999999998653

>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit

Probab=96.58  E-value=0.0023  Score=62.26  Aligned_cols=34  Identities=38%  Similarity=0.712  Sum_probs=31.5

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ||++|||+|.+|+++|..|++ .+.+|+|+|+|..
T Consensus         1 ~Dv~IIGgG~aGl~~A~~l~~-~g~~v~lv~~~~~   34 (419)
T TIGR03378         1 FDVIIIGGGLAGLSCALRLAE-AGKKCAIIAAGQS   34 (419)
T ss_pred             CCEEEECchHHHHHHHHHHHH-CCCCEEEEeCCCc
Confidence            699999999999999999998 5999999999963

Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=96.54  E-value=0.0025  Score=68.36  Aligned_cols=37  Identities=19%  Similarity=0.401  Sum_probs=33.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..+|++|||+|+||+.+|..+++ .+.+|+|+|.++..
T Consensus       162 ~~~dVvIIGaGPAGLaAA~~aar-~G~~V~liD~~~~~  198 (985)
T TIGR01372       162 AHCDVLVVGAGPAGLAAALAAAR-AGARVILVDEQPEA  198 (985)
T ss_pred             ccCCEEEECCCHHHHHHHHHHHh-CCCcEEEEecCCCC
Confidence            46899999999999999999999 69999999987543

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=96.52  E-value=0.0027  Score=65.15  Aligned_cols=36  Identities=28%  Similarity=0.484  Sum_probs=33.1

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ....+++|||+|++|+++|..|++ .+.+|.|+|+.+
T Consensus        79 ~~~~~VlIVGgGIaGLalAlaL~r-~Gi~V~V~Er~~  114 (668)
T PLN02927         79 KKKSRVLVAGGGIGGLVFALAAKK-KGFDVLVFEKDL  114 (668)
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHh-cCCeEEEEeccc
Confidence            566999999999999999999999 599999999875

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=96.51  E-value=0.0029  Score=60.77  Aligned_cols=35  Identities=31%  Similarity=0.519  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|++|+++|..|++..+.+|+|+|+.+..
T Consensus         2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~   36 (414)
T TIGR03219         2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAF   36 (414)
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcC
Confidence            58999999999999999998423699999998654

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK12831 putative oxidoreductase; Provisional

Probab=96.50  E-value=0.0034  Score=61.83  Aligned_cols=38  Identities=21%  Similarity=0.328  Sum_probs=33.4

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .....|++|||+|++|+.+|..|++ .+.+|+|+|+...
T Consensus       137 ~~~~~~V~IIG~GpAGl~aA~~l~~-~G~~V~v~e~~~~  174 (464)
T PRK12831        137 EKKGKKVAVIGSGPAGLTCAGDLAK-MGYDVTIFEALHE  174 (464)
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHh-CCCeEEEEecCCC
Confidence            3456899999999999999999999 5999999998543

>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]

Probab=96.49  E-value=0.0027  Score=64.04  Aligned_cols=38  Identities=37%  Similarity=0.548  Sum_probs=34.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..++|+||||+|.||+.+|.++++ .+.+|+|||+....
T Consensus         4 ~~~~DvvVIG~G~AGl~AAi~aa~-~g~~V~l~~K~~~~   41 (562)
T COG1053           4 IHEFDVVVIGGGGAGLRAAIEAAE-AGLKVALLSKAPPK   41 (562)
T ss_pred             cccCCEEEECCcHHHHHHHHHHHh-cCCcEEEEEccccC
Confidence            457999999999999999999999 58999999988654

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=96.48  E-value=0.0029  Score=61.90  Aligned_cols=32  Identities=31%  Similarity=0.532  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ++||||+|++|..+|.++++ .+.+|+|||++.
T Consensus         2 ~vvVIG~G~aG~~aA~~~~~-~g~~V~lie~~~   33 (458)
T PRK06912          2 KLVVIGGGPAGYVAAITAAQ-NGKNVTLIDEAD   33 (458)
T ss_pred             eEEEECCCHHHHHHHHHHHh-CCCcEEEEECCc
Confidence            68999999999999999999 699999999864

>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria

Probab=96.47  E-value=0.0027  Score=61.22  Aligned_cols=28  Identities=36%  Similarity=0.557  Sum_probs=25.0

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEe
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLL   84 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~l   84 (284)
                      ||||||+|.|||.+|..+++ .+.+|+|+
T Consensus         1 DViVVGgG~AG~eAA~aaAr-~G~~V~Li   28 (392)
T PF01134_consen    1 DVIVVGGGHAGCEAALAAAR-MGAKVLLI   28 (392)
T ss_dssp             EEEEESSSHHHHHHHHHHHH-TT--EEEE
T ss_pred             CEEEECCCHHHHHHHHHHHH-CCCCEEEE
Confidence            89999999999999999999 59999999

Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.

>PRK07512 L-aspartate oxidase; Provisional

Probab=96.45  E-value=0.0026  Score=63.36  Aligned_cols=35  Identities=29%  Similarity=0.415  Sum_probs=30.8

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ..++||||||+|.||+.+|.++++   .+|+|||++..
T Consensus         7 ~~~~DVlVIG~G~AGl~AAl~Aa~---~~V~lleK~~~   41 (513)
T PRK07512          7 ILTGRPVIVGGGLAGLMAALKLAP---RPVVVLSPAPL   41 (513)
T ss_pred             CCcCCEEEECchHHHHHHHHHhCc---CCEEEEECCCC
Confidence            456999999999999999999874   49999999875

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=96.45  E-value=0.0036  Score=66.97  Aligned_cols=36  Identities=25%  Similarity=0.331  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ...+++|||+|+||+++|..|++ .+.+|+|+|+.+.
T Consensus       536 ~~kkVaIIGGGPAGLSAA~~LAr-~G~~VTV~Ek~~~  571 (1012)
T TIGR03315       536 SAHKVAVIGAGPAGLSAGYFLAR-AGHPVTVFEKKEK  571 (1012)
T ss_pred             CCCcEEEECCCHHHHHHHHHHHH-CCCeEEEEecccc
Confidence            45899999999999999999999 5999999998753

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase

Probab=96.45  E-value=0.0032  Score=61.50  Aligned_cols=33  Identities=33%  Similarity=0.509  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      |++|||+|.+||.+|..|++ .+.+|+|+|..+.
T Consensus         2 ~VvVIGgGlAGleaA~~LAr-~G~~V~LiE~rp~   34 (433)
T TIGR00137         2 PVHVIGGGLAGSEAAWQLAQ-AGVPVILYEMRPE   34 (433)
T ss_pred             CEEEECCCHHHHHHHHHHHh-CCCcEEEEecccc
Confidence            79999999999999999999 5999999997665

This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.

>PLN02612 phytoene desaturase

Probab=96.44  E-value=0.0046  Score=62.42  Aligned_cols=38  Identities=29%  Similarity=0.403  Sum_probs=33.4

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .....+++|||+|.+|+++|.+|++ .+.+|+|+|+...
T Consensus        90 ~~~~~~v~iiG~G~~Gl~~a~~l~~-~g~~~~~~e~~~~  127 (567)
T PLN02612         90 PAKPLKVVIAGAGLAGLSTAKYLAD-AGHKPILLEARDV  127 (567)
T ss_pred             CCCCCCEEEECCCHHHHHHHHHHHh-cCCeEEEEecCCC
Confidence            3456899999999999999999999 5999999999654

>PRK07846 mycothione reductase; Reviewed

Probab=96.41  E-value=0.0035  Score=61.44  Aligned_cols=32  Identities=34%  Similarity=0.783  Sum_probs=27.5

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      +||+||||+|++|..+|.+.   .+.+|+|+|++.
T Consensus         1 ~yD~vVIG~G~~g~~aa~~~---~G~~V~lie~~~   32 (451)
T PRK07846          1 HYDLIIIGTGSGNSILDERF---ADKRIAIVEKGT   32 (451)
T ss_pred             CCCEEEECCCHHHHHHHHHH---CCCeEEEEeCCC
Confidence            38999999999999888763   389999999753

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=96.41  E-value=0.0032  Score=62.02  Aligned_cols=34  Identities=26%  Similarity=0.454  Sum_probs=31.5

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .|+|+|+|.||+++|..|++ .+..|.|+|+|+..
T Consensus         2 rVai~GaG~AgL~~a~~La~-~g~~vt~~ea~~~~   35 (485)
T COG3349           2 RVAIAGAGLAGLAAAYELAD-AGYDVTLYEARDRL   35 (485)
T ss_pred             eEEEEcccHHHHHHHHHHHh-CCCceEEEeccCcc
Confidence            48999999999999999999 69999999999864

>KOG2614|consensus

Probab=96.40  E-value=0.0039  Score=60.02  Aligned_cols=36  Identities=42%  Similarity=0.551  Sum_probs=32.6

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      +-++||||+|.+|++.|..|++ .+++|+|+|...+.
T Consensus         2 ~~~VvIvGgGI~Gla~A~~l~r-~G~~v~VlE~~e~~   37 (420)
T KOG2614|consen    2 EPKVVIVGGGIVGLATALALHR-KGIDVVVLESREDP   37 (420)
T ss_pred             CCcEEEECCcHHHHHHHHHHHH-cCCeEEEEeecccc
Confidence            4689999999999999999999 69999999996654

>KOG2665|consensus

Probab=96.37  E-value=0.0025  Score=59.64  Aligned_cols=40  Identities=38%  Similarity=0.598  Sum_probs=35.0

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhc-CCCCeEEEeccCCcc
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSE-NPKWKVLLLESGEDE   90 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~-~~~~~vl~lE~G~~~   90 (284)
                      ..+.||.+|||+|..|++.|.+|+- .|.++|+|||+-...
T Consensus        45 s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~l   85 (453)
T KOG2665|consen   45 SKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSL   85 (453)
T ss_pred             ccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhh
Confidence            3568999999999999999999984 489999999988653

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=96.36  E-value=0.0047  Score=60.83  Aligned_cols=38  Identities=21%  Similarity=0.379  Sum_probs=33.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ....+++|||+|++|+.+|..|++ .+.+|+|+|+.+..
T Consensus       141 ~~~~~VvIIGaGpAGl~aA~~l~~-~G~~V~vie~~~~~  178 (471)
T PRK12810        141 RTGKKVAVVGSGPAGLAAADQLAR-AGHKVTVFERADRI  178 (471)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHh-CCCcEEEEecCCCC
Confidence            455799999999999999999999 59999999987643

>KOG2820|consensus

Probab=96.35  E-value=0.0031  Score=59.37  Aligned_cols=38  Identities=34%  Similarity=0.390  Sum_probs=34.0

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ....|+||||+|..|+++|..|+++ +.++|+||+=+..
T Consensus         5 ~~~~~viiVGAGVfG~stAyeLaK~-g~killLeqf~~p   42 (399)
T KOG2820|consen    5 VKSRDVIIVGAGVFGLSTAYELAKR-GDKILLLEQFPLP   42 (399)
T ss_pred             ccceeEEEEcccccchHHHHHHHhc-CCeEEEEeccCCC
Confidence            4568999999999999999999995 8999999987654

>TIGR00275 flavoprotein, HI0933 family

Probab=96.34  E-value=0.0024  Score=61.54  Aligned_cols=32  Identities=38%  Similarity=0.560  Sum_probs=29.1

Q ss_pred             EEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          58 VIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        58 iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ||||+|++|+++|..+++ .+.+|+|||+.+..
T Consensus         1 vIIGgG~aGl~aAi~aa~-~G~~V~llEk~~~~   32 (400)
T TIGR00275         1 IIIGGGAAGLMAAITAAR-EGLSVLLLEKNKKI   32 (400)
T ss_pred             CEEEEeHHHHHHHHHHHh-cCCcEEEEecCccc
Confidence            699999999999999999 59999999998653

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>TIGR03452 mycothione_red mycothione reductase

Probab=96.32  E-value=0.0042  Score=60.85  Aligned_cols=32  Identities=34%  Similarity=0.727  Sum_probs=27.2

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      +||+||||+|++|..+|.+.   .+.+|+|+|++.
T Consensus         2 ~yD~vvIG~G~~g~~aa~~~---~g~~V~lie~~~   33 (452)
T TIGR03452         2 HYDLIIIGTGSGNSIPDPRF---ADKRIAIVEKGT   33 (452)
T ss_pred             CcCEEEECCCHHHHHHHHHH---CCCeEEEEeCCC
Confidence            59999999999999887654   389999999753

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>TIGR00136 gidA glucose-inhibited division protein A

Probab=96.30  E-value=0.0041  Score=63.13  Aligned_cols=34  Identities=35%  Similarity=0.497  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ||+||||+|.+|+.+|..+++ .+.+|+|||.+..
T Consensus         1 yDViVIGaG~AGl~aA~ala~-~G~~v~Lie~~~~   34 (617)
T TIGR00136         1 FDVIVIGGGHAGCEAALAAAR-MGAKTLLLTLNLD   34 (617)
T ss_pred             CeEEEECccHHHHHHHHHHHH-CCCCEEEEecccc
Confidence            799999999999999999998 5999999998743

GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=96.25  E-value=0.0059  Score=59.77  Aligned_cols=37  Identities=22%  Similarity=0.345  Sum_probs=33.0

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ....+++|||+|++|+.+|..|++ .+.+|+|+|+...
T Consensus       131 ~~~~~V~IIG~G~aGl~aA~~l~~-~G~~V~vie~~~~  167 (449)
T TIGR01316       131 STHKKVAVIGAGPAGLACASELAK-AGHSVTVFEALHK  167 (449)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence            456899999999999999999999 5999999998653

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>KOG1399|consensus

Probab=96.24  E-value=0.0042  Score=60.97  Aligned_cols=36  Identities=28%  Similarity=0.440  Sum_probs=33.2

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .-+++|||+|++|+++|..|.+ .+..|.|+|+....
T Consensus         6 ~~~vaIIGAG~sGL~~ar~l~~-~g~~v~vfEr~~~i   41 (448)
T KOG1399|consen    6 SKDVAVIGAGPAGLAAARELLR-EGHEVVVFERTDDI   41 (448)
T ss_pred             CCceEEECcchHHHHHHHHHHH-CCCCceEEEecCCc
Confidence            4689999999999999999999 59999999999865

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=96.24  E-value=0.0083  Score=44.28  Aligned_cols=34  Identities=35%  Similarity=0.449  Sum_probs=31.2

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeccCCccc
Q psy4112          57 FVIIGGGVGGSVVANRLSENPKWKVLLLESGEDEN   91 (284)
Q Consensus        57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~   91 (284)
                      ++|||+|..|+-+|..|++ .+.+|.|||+++...
T Consensus         2 vvViGgG~ig~E~A~~l~~-~g~~vtli~~~~~~~   35 (80)
T PF00070_consen    2 VVVIGGGFIGIELAEALAE-LGKEVTLIERSDRLL   35 (80)
T ss_dssp             EEEESSSHHHHHHHHHHHH-TTSEEEEEESSSSSS
T ss_pred             EEEECcCHHHHHHHHHHHH-hCcEEEEEeccchhh
Confidence            6899999999999999999 599999999998654

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=96.23  E-value=0.0047  Score=60.56  Aligned_cols=35  Identities=37%  Similarity=0.643  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~   90 (284)
                      .++|||+|.+|+++|.+|.+. |...|.|+|++...
T Consensus         2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~   37 (444)
T COG1232           2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRV   37 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCC
Confidence            379999999999999999995 44999999998654

>PLN02529 lysine-specific histone demethylase 1

Probab=96.18  E-value=0.0062  Score=63.30  Aligned_cols=38  Identities=29%  Similarity=0.425  Sum_probs=33.8

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .....|++|||+|++|+.+|..|++ .+.+|+|+|+...
T Consensus       157 ~~~~~~v~viGaG~aGl~aA~~l~~-~g~~v~v~E~~~~  194 (738)
T PLN02529        157 EGTEGSVIIVGAGLAGLAAARQLLS-FGFKVVVLEGRNR  194 (738)
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHH-cCCcEEEEecCcc
Confidence            3457899999999999999999999 5999999999754

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=96.15  E-value=0.0077  Score=60.75  Aligned_cols=39  Identities=23%  Similarity=0.281  Sum_probs=33.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcC---CCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSEN---PKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~---~~~~vl~lE~G~~~   90 (284)
                      .+.-+++|||||.+|+++|..|.++   ++.+|.|+|+....
T Consensus        20 ~~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~   61 (576)
T PRK13977         20 VDNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVP   61 (576)
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCC
Confidence            3457899999999999999999986   47899999998754

>KOG0685|consensus

Probab=96.15  E-value=0.0057  Score=59.82  Aligned_cols=39  Identities=38%  Similarity=0.526  Sum_probs=34.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .....++|||+|.||+.+|.||.+.....|+|+|+....
T Consensus        19 ~~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRI   57 (498)
T KOG0685|consen   19 RGNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRI   57 (498)
T ss_pred             cCCceEEEECCchHHHHHHHHHHHhCCceEEEEEecccc
Confidence            344689999999999999999998777899999998765

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=96.14  E-value=0.0082  Score=56.62  Aligned_cols=40  Identities=23%  Similarity=0.297  Sum_probs=34.2

Q ss_pred             CCCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          50 PILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        50 ~~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      +.....+++|||+|++|+.+|..|++ .+.+|+|+|+.+..
T Consensus        14 ~~~~~~~VvIIG~G~aGl~aA~~l~~-~g~~v~lie~~~~~   53 (352)
T PRK12770         14 PPPTGKKVAIIGAGPAGLAAAGYLAC-LGYEVHVYDKLPEP   53 (352)
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHH-CCCcEEEEeCCCCC
Confidence            33445699999999999999999998 59999999988654

>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup

Probab=96.14  E-value=0.0046  Score=62.92  Aligned_cols=31  Identities=26%  Similarity=0.563  Sum_probs=29.0

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          57 FVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      |||||+|.||+.+|.++++ .+.+|+|||++.
T Consensus         1 VlVVG~G~AGl~AAl~Aae-~G~~VilleK~~   31 (603)
T TIGR01811         1 VIVVGTGLAGGMAAAKLAE-LGYHVKLFSYVD   31 (603)
T ss_pred             CEEECccHHHHHHHHHHHH-cCCCEEEEEecC
Confidence            6899999999999999998 589999999987

This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=96.13  E-value=0.006  Score=60.22  Aligned_cols=34  Identities=26%  Similarity=0.327  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      +++|||+|.+|+++|.+|++ .+.+|+|+|+....
T Consensus         1 ~v~IiG~G~aGl~aA~~L~~-~G~~v~v~E~~~~~   34 (474)
T TIGR02732         1 KVAIVGAGLAGLSTAVELVD-AGHEVDIYESRSFI   34 (474)
T ss_pred             CEEEECCCHHHHHHHHHHHH-CCCcEEEEEecCCC
Confidence            47999999999999999999 59999999997644

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=96.08  E-value=0.0074  Score=63.23  Aligned_cols=38  Identities=29%  Similarity=0.510  Sum_probs=33.7

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ....+++|||+|.+|+++|..|++ .+.+|+|+|+....
T Consensus       236 ~~~~~v~IiGaG~aGl~aA~~L~~-~g~~v~v~E~~~r~  273 (808)
T PLN02328        236 VEPANVVVVGAGLAGLVAARQLLS-MGFKVVVLEGRARP  273 (808)
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHH-CCCcEEEEeccccC
Confidence            456899999999999999999998 69999999997543

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=96.07  E-value=0.0071  Score=59.23  Aligned_cols=39  Identities=33%  Similarity=0.491  Sum_probs=30.3

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCccc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDEN   91 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~   91 (284)
                      .++||+||+|.|..-|++|..|+. .+++||.||+.....
T Consensus         2 ~~~yDviI~GTGl~esila~als~-~GkkVLhiD~n~yYG   40 (438)
T PF00996_consen    2 DEEYDVIILGTGLTESILAAALSR-SGKKVLHIDRNDYYG   40 (438)
T ss_dssp             -SBESEEEE--SHHHHHHHHHHHH-TT--EEEE-SSSSSC
T ss_pred             CccceEEEECCCcHHHHHHHHHHh-cCCEEEecCCCCCcC
Confidence            578999999999999999999999 599999999998763

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan

Probab=96.06  E-value=0.0053  Score=60.36  Aligned_cols=34  Identities=38%  Similarity=0.560  Sum_probs=27.1

Q ss_pred             cEEEECCChHHHHHHHHHhcCCC---CeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPK---WKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~---~~vl~lE~G~~~   90 (284)
                      ||+|||+|++|..+|..|++. .   .+|+|||.....
T Consensus         1 ~v~IvGgG~aG~~~A~~L~~~-~~~~~~v~lie~~~~~   37 (454)
T PF04820_consen    1 DVVIVGGGTAGWMAAAALARA-GPDALSVTLIESPDIP   37 (454)
T ss_dssp             EEEEE--SHHHHHHHHHHHHH-CTCSSEEEEEE-SSS-
T ss_pred             CEEEECCCHHHHHHHHHHHHh-CCCCcEEEEEecCCCC
Confidence            799999999999999999984 4   899999998755

This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=96.06  E-value=0.0085  Score=58.65  Aligned_cols=38  Identities=24%  Similarity=0.455  Sum_probs=33.4

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ....+++|||+|++|+.+|..|++ .+.+|+|+|+....
T Consensus       138 ~~~~~VvIIGgGpaGl~aA~~l~~-~g~~V~lie~~~~~  175 (457)
T PRK11749        138 KTGKKVAVIGAGPAGLTAAHRLAR-KGYDVTIFEARDKA  175 (457)
T ss_pred             cCCCcEEEECCCHHHHHHHHHHHh-CCCeEEEEccCCCC
Confidence            445799999999999999999999 59999999987643

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=96.00  E-value=0.0068  Score=64.76  Aligned_cols=36  Identities=22%  Similarity=0.327  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ...+|+|||||+||+++|..|++ .+.+|+|+|+...
T Consensus       305 ~gkkVaVIGsGPAGLsaA~~Lar-~G~~VtVfE~~~~  340 (944)
T PRK12779        305 VKPPIAVVGSGPSGLINAYLLAV-EGFPVTVFEAFHD  340 (944)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH-CCCeEEEEeeCCC
Confidence            45789999999999999999999 5999999998653

>PLN02852 ferredoxin-NADP+ reductase

Probab=95.99  E-value=0.011  Score=58.68  Aligned_cols=40  Identities=18%  Similarity=0.257  Sum_probs=34.1

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhc-CCCCeEEEeccCCcc
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSE-NPKWKVLLLESGEDE   90 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~-~~~~~vl~lE~G~~~   90 (284)
                      ......|+|||+|+||+.+|..|++ ..+.+|.|+|+-+..
T Consensus        23 ~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~p   63 (491)
T PLN02852         23 TSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTP   63 (491)
T ss_pred             CCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCC
Confidence            3445789999999999999999985 358999999998865

>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]

Probab=95.93  E-value=0.0084  Score=56.47  Aligned_cols=35  Identities=26%  Similarity=0.568  Sum_probs=32.5

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      +||++|||+|.+|+.+|.+|.+ .++++.+|-.|..
T Consensus         2 ~fDv~IIGGGLAGltc~l~l~~-~Gk~c~iv~~gQs   36 (421)
T COG3075           2 NFDVAIIGGGLAGLTCGLALQQ-AGKRCAIVNRGQS   36 (421)
T ss_pred             cccEEEEcCcHHHHHHHHHHHh-cCCcEEEEeCChh
Confidence            5999999999999999999999 5999999999975

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=95.93  E-value=0.0082  Score=61.56  Aligned_cols=36  Identities=25%  Similarity=0.353  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ...+++|||+|++|+++|..|++ .+.+|+|+|+...
T Consensus       326 ~~~~VaIIGaGpAGLsaA~~L~~-~G~~V~V~E~~~~  361 (654)
T PRK12769        326 SDKRVAIIGAGPAGLACADVLAR-NGVAVTVYDRHPE  361 (654)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence            45799999999999999999999 5999999998754

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=95.91  E-value=0.0084  Score=64.50  Aligned_cols=37  Identities=22%  Similarity=0.123  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ...+++|||+|++|+++|..|++ .+.+|+|+|++...
T Consensus       429 ~~~kVaIIG~GPAGLsaA~~La~-~G~~VtV~E~~~~~  465 (1006)
T PRK12775        429 KLGKVAICGSGPAGLAAAADLVK-YGVDVTVYEALHVV  465 (1006)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH-cCCcEEEEecCCCC
Confidence            45799999999999999999999 59999999987643

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=95.84  E-value=0.01  Score=61.84  Aligned_cols=36  Identities=22%  Similarity=0.350  Sum_probs=32.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ....+++|||+|+||+++|..|++ .+.+|+|+|+.+
T Consensus       429 ~~~~~V~IIGaGpAGl~aA~~l~~-~G~~V~v~e~~~  464 (752)
T PRK12778        429 KNGKKVAVIGSGPAGLSFAGDLAK-RGYDVTVFEALH  464 (752)
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHH-CCCeEEEEecCC
Confidence            346799999999999999999999 599999999854

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=95.80  E-value=0.0089  Score=62.50  Aligned_cols=34  Identities=29%  Similarity=0.394  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCc
Q psy4112          56 DFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGED   89 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~   89 (284)
                      +++|||+|++|+++|..|++. ++.+|+|+|+.+.
T Consensus         2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~   36 (765)
T PRK08255          2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP   36 (765)
T ss_pred             eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence            689999999999999999983 3899999998764

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=95.79  E-value=0.011  Score=58.21  Aligned_cols=32  Identities=34%  Similarity=0.433  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      |+||||+|++|..+|..+++ .+.+|+|+|++.
T Consensus         3 ~vvviG~G~~G~~~a~~~~~-~g~~v~~~e~~~   34 (466)
T PRK07845          3 RIVIIGGGPGGYEAALVAAQ-LGADVTVIERDG   34 (466)
T ss_pred             cEEEECCCHHHHHHHHHHHh-CCCeEEEEEccC
Confidence            79999999999999999999 599999999764

>KOG2960|consensus

Probab=95.73  E-value=0.0031  Score=56.10  Aligned_cols=38  Identities=34%  Similarity=0.542  Sum_probs=32.8

Q ss_pred             CCcccEEEECCChHHHHHHHHHhc-CCCCeEEEeccCCc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSE-NPKWKVLLLESGED   89 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~-~~~~~vl~lE~G~~   89 (284)
                      ..+.|+||||+|.+|+++|+.++. +|+++|.+||+--.
T Consensus        74 yAesDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVa  112 (328)
T KOG2960|consen   74 YAESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVA  112 (328)
T ss_pred             hhccceEEECCCccccceeeeeeccCCCceEEEEEeeec
Confidence            346799999999999999999994 48999999998543

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=95.73  E-value=0.011  Score=63.30  Aligned_cols=37  Identities=27%  Similarity=0.329  Sum_probs=32.8

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ...-+++|||+|+||+++|..|++ .+.+|+|+|+.+.
T Consensus       537 ~tgKkVaIIGgGPAGLsAA~~Lar-~G~~VtV~Ek~~~  573 (1019)
T PRK09853        537 GSRKKVAVIGAGPAGLAAAYFLAR-AGHPVTVFEREEN  573 (1019)
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHH-cCCeEEEEecccc
Confidence            345799999999999999999999 5999999998754

>KOG2853|consensus

Probab=95.63  E-value=0.013  Score=55.50  Aligned_cols=44  Identities=34%  Similarity=0.436  Sum_probs=36.9

Q ss_pred             CCCCCCCcccEEEECCChHHHHHHHHHhcC---CCCeEEEeccCCcc
Q psy4112          47 GNKPILSEYDFVIIGGGVGGSVVANRLSEN---PKWKVLLLESGEDE   90 (284)
Q Consensus        47 ~~~~~~~~~d~iivg~G~~g~~~a~~l~~~---~~~~vl~lE~G~~~   90 (284)
                      ++...+.++|++|||+|-.|+++|..|.|.   .+.+|+|+|+....
T Consensus        79 ~~~~f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty  125 (509)
T KOG2853|consen   79 DNEVFPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY  125 (509)
T ss_pred             cccccccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence            445567899999999999999999999873   56899999987643

>PLN02487 zeta-carotene desaturase

Probab=95.57  E-value=0.015  Score=58.88  Aligned_cols=37  Identities=27%  Similarity=0.309  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ...+++|||+|.+|+++|.+|.+ .+.+|+|+|+.+..
T Consensus        74 ~~~~v~iiG~G~~Gl~~a~~L~~-~g~~v~i~E~~~~~  110 (569)
T PLN02487         74 PKLKVAIIGAGLAGMSTAVELLD-QGHEVDIYESRPFI  110 (569)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHh-CCCeeEEEecCCCC
Confidence            34699999999999999999998 59999999997654

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=95.51  E-value=0.019  Score=59.05  Aligned_cols=37  Identities=27%  Similarity=0.344  Sum_probs=32.8

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ....+++|||+|++|+.+|..|++ .+.+|+|+|+...
T Consensus       191 ~~~k~VaIIGaGpAGl~aA~~La~-~G~~Vtv~e~~~~  227 (652)
T PRK12814        191 KSGKKVAIIGAGPAGLTAAYYLLR-KGHDVTIFDANEQ  227 (652)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence            345799999999999999999999 5999999998764

>PLN03000 amine oxidase

Probab=95.37  E-value=0.02  Score=60.34  Aligned_cols=37  Identities=32%  Similarity=0.484  Sum_probs=33.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ...+++|||+|.+|+.+|..|.+ .+.+|+|+|+....
T Consensus       183 ~~~~VvIIGaG~aGL~aA~~L~~-~G~~V~VlE~~~ri  219 (881)
T PLN03000        183 SKSSVVIVGAGLSGLAAARQLMR-FGFKVTVLEGRKRP  219 (881)
T ss_pred             CCCCEEEECccHHHHHHHHHHHH-CCCcEEEEEccCcC
Confidence            46899999999999999999998 59999999998765

>KOG4716|consensus

Probab=95.30  E-value=0.016  Score=54.90  Aligned_cols=36  Identities=33%  Similarity=0.541  Sum_probs=32.0

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      .-.||.||||+|.+|+++|.+.+. -+.+|++|+.=.
T Consensus        17 sydyDLIviGgGSgGLacaKeAa~-~G~kV~~lDfV~   52 (503)
T KOG4716|consen   17 SYDYDLIVIGGGSGGLACAKEAAD-LGAKVACLDFVK   52 (503)
T ss_pred             cCCccEEEEcCCcchhhHHHHHHh-cCCcEEEEeecc
Confidence            456999999999999999999998 599999999653

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=95.29  E-value=0.019  Score=57.59  Aligned_cols=34  Identities=29%  Similarity=0.426  Sum_probs=28.2

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .|+|||+|++|+++|..|.| .+..|+++|+..+.
T Consensus         3 rVaVIGaG~sGL~a~k~l~e-~g~~~~~fE~~~~i   36 (531)
T PF00743_consen    3 RVAVIGAGPSGLAAAKNLLE-EGLEVTCFEKSDDI   36 (531)
T ss_dssp             EEEEE--SHHHHHHHHHHHH-TT-EEEEEESSSSS
T ss_pred             EEEEECccHHHHHHHHHHHH-CCCCCeEEecCCCC
Confidence            48999999999999999999 59999999998765

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>PTZ00188 adrenodoxin reductase; Provisional

Probab=95.27  E-value=0.026  Score=56.12  Aligned_cols=38  Identities=21%  Similarity=0.294  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ...-|+|||+|++|+.+|.+|+...+.+|.|+|+-+..
T Consensus        38 ~~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~p   75 (506)
T PTZ00188         38 KPFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNP   75 (506)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence            34679999999999999998764468999999999866

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=95.27  E-value=0.022  Score=60.68  Aligned_cols=35  Identities=17%  Similarity=0.282  Sum_probs=31.6

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      .....|+|||+|+||+.+|..|++ .+.+|.|+|+.
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~-~Gh~Vtv~E~~  415 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLR-SGHNVTAIDGL  415 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHh-CCCeEEEEccc
Confidence            355789999999999999999998 59999999974

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=95.24  E-value=0.013  Score=56.79  Aligned_cols=30  Identities=37%  Similarity=0.537  Sum_probs=27.7

Q ss_pred             EECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          59 IIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        59 ivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      |||+|.+|+++|.++++ .+.+|+|||+.+.
T Consensus         1 VVG~G~AGl~AA~~Aa~-~Ga~V~vlEK~~~   30 (432)
T TIGR02485         1 VIGGGLAGLCAAIEARR-AGASVLLLEAAPR   30 (432)
T ss_pred             CCcccHHHHHHHHHHHh-CCCcEEEEeCCCC
Confidence            79999999999999999 5999999999764

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=95.17  E-value=0.027  Score=55.78  Aligned_cols=36  Identities=19%  Similarity=0.402  Sum_probs=32.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ...+++|||+|++|+.+|..|++ .+.+|+|+|+.+.
T Consensus       142 ~~~~V~IIGaG~aGl~aA~~L~~-~g~~V~v~e~~~~  177 (485)
T TIGR01317       142 TGKKVAVVGSGPAGLAAADQLNR-AGHTVTVFEREDR  177 (485)
T ss_pred             CCCEEEEECCcHHHHHHHHHHHH-cCCeEEEEecCCC
Confidence            34799999999999999999999 5999999998764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=95.15  E-value=0.026  Score=55.61  Aligned_cols=36  Identities=19%  Similarity=0.378  Sum_probs=32.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ...+++|||+|++|+.+|..|++ .+.+|+|+|+.+.
T Consensus       140 ~~~~V~IIG~GpaGl~aA~~l~~-~G~~V~i~e~~~~  175 (467)
T TIGR01318       140 TGKRVAVIGAGPAGLACADILAR-AGVQVVVFDRHPE  175 (467)
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCC
Confidence            45799999999999999999998 5999999998764

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle

Probab=95.07  E-value=0.027  Score=55.33  Aligned_cols=38  Identities=34%  Similarity=0.738  Sum_probs=34.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhc-CCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSE-NPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~-~~~~~vl~lE~G~~~   90 (284)
                      +++|||+||+|..|++++.-|.+ +|.++|.|+|+-...
T Consensus         2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~   40 (488)
T PF06039_consen    2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSV   40 (488)
T ss_pred             CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcc
Confidence            56999999999999999999997 489999999988754

The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process

>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]

Probab=95.06  E-value=0.021  Score=56.27  Aligned_cols=33  Identities=33%  Similarity=0.551  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ||+|||+|.||+++|..|++  ..+|+||-+++..
T Consensus         9 dV~IiGsG~AGL~~AL~L~~--~~~V~vltk~~~~   41 (518)
T COG0029           9 DVLIIGSGLAGLTAALSLAP--SFRVTVLTKGPLG   41 (518)
T ss_pred             cEEEECCcHHHHHHHHhCCC--CCcEEEEeCCCCC
Confidence            99999999999999999997  4999999998754

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.96  E-value=0.027  Score=57.75  Aligned_cols=36  Identities=19%  Similarity=0.289  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ...+++|||+|++|+++|..|++ .+.+|+|+|+.+.
T Consensus       309 ~~kkVaIIG~GpaGl~aA~~L~~-~G~~Vtv~e~~~~  344 (639)
T PRK12809        309 RSEKVAVIGAGPAGLGCADILAR-AGVQVDVFDRHPE  344 (639)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHH-cCCcEEEEeCCCC
Confidence            46889999999999999999999 5999999998875

>PLN02976 amine oxidase

Probab=94.86  E-value=0.032  Score=61.56  Aligned_cols=36  Identities=22%  Similarity=0.449  Sum_probs=32.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ...|++|||+|++|+.+|..|.+ .+.+|+|||+...
T Consensus       692 ~~~dV~IIGAG~AGLaAA~~L~~-~G~~V~VlEa~~~  727 (1713)
T PLN02976        692 DRKKIIVVGAGPAGLTAARHLQR-QGFSVTVLEARSR  727 (1713)
T ss_pred             CCCcEEEECchHHHHHHHHHHHH-CCCcEEEEeeccC
Confidence            35899999999999999999999 5999999998543

>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]

Probab=94.85  E-value=0.026  Score=56.32  Aligned_cols=37  Identities=38%  Similarity=0.504  Sum_probs=32.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..|||||||+|-||+-+|...++ -+.+++||-...+.
T Consensus         3 ~~~DVIVIGgGHAG~EAA~AaAR-mG~ktlLlT~~~dt   39 (621)
T COG0445           3 KEYDVIVIGGGHAGVEAALAAAR-MGAKTLLLTLNLDT   39 (621)
T ss_pred             CCCceEEECCCccchHHHHhhhc-cCCeEEEEEcCCCc
Confidence            45999999999999999999998 59999998766543

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=94.79  E-value=0.035  Score=54.78  Aligned_cols=36  Identities=33%  Similarity=0.524  Sum_probs=32.4

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .=+++|||+|.+|+.+|..|++ .+.+|.|+|.-+..
T Consensus       124 ~~svLVIGGGvAGitAAl~La~-~G~~v~LVEKepsi  159 (622)
T COG1148         124 SKSVLVIGGGVAGITAALELAD-MGFKVYLVEKEPSI  159 (622)
T ss_pred             ccceEEEcCcHHHHHHHHHHHH-cCCeEEEEecCCcc
Confidence            3568999999999999999999 59999999998764

>PRK09897 hypothetical protein; Provisional

Probab=94.79  E-value=0.035  Score=55.84  Aligned_cols=35  Identities=17%  Similarity=0.327  Sum_probs=30.0

Q ss_pred             ccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGED   89 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~   89 (284)
                      .+++|||+|++|+++|.+|.+. ...+|+|+|.+..
T Consensus         2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~   37 (534)
T PRK09897          2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADE   37 (534)
T ss_pred             CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCC
Confidence            4799999999999999999874 3569999998654

>KOG0042|consensus

Probab=94.71  E-value=0.014  Score=58.10  Aligned_cols=38  Identities=34%  Similarity=0.514  Sum_probs=33.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..+||++|||||++|.-+|..-+- .+++|.++|+|...
T Consensus        65 ~~~fDVLIIGGGAtGaGcALDA~T-RGLktaLVE~~DF~  102 (680)
T KOG0042|consen   65 THEFDVLIIGGGATGAGCALDAAT-RGLKTALVEAGDFA  102 (680)
T ss_pred             CCcccEEEECCCccCcceeehhhc-ccceeEEEeccccc
Confidence            346999999999999999988776 59999999999864

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=94.65  E-value=0.028  Score=53.44  Aligned_cols=36  Identities=28%  Similarity=0.411  Sum_probs=32.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..-++.|||+|.+|+++|.-|+.  ..+|.|.||+..-
T Consensus         7 ~r~~IAVIGsGisGLSAA~~Ls~--rhdVTLfEA~~rl   42 (447)
T COG2907           7 PRRKIAVIGSGISGLSAAWLLSR--RHDVTLFEADRRL   42 (447)
T ss_pred             CCcceEEEcccchhhhhHHhhhc--ccceEEEeccccc
Confidence            45789999999999999999997  7899999999765

>KOG0405|consensus

Probab=94.61  E-value=0.033  Score=52.97  Aligned_cols=36  Identities=36%  Similarity=0.594  Sum_probs=32.8

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ..+||++|||+|.+|...|.|.++ -+.+|.|+|+..
T Consensus        18 ~k~fDylvIGgGSGGvasARrAa~-~GAkv~l~E~~f   53 (478)
T KOG0405|consen   18 VKDFDYLVIGGGSGGVASARRAAS-HGAKVALCELPF   53 (478)
T ss_pred             ccccceEEEcCCcchhHHhHHHHh-cCceEEEEecCC
Confidence            458999999999999999999998 499999999983

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=94.53  E-value=0.041  Score=53.33  Aligned_cols=35  Identities=20%  Similarity=0.335  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~   90 (284)
                      .++|||+|++|+.+|..|.+. +..+|+|||+.+..
T Consensus         2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~   37 (444)
T PRK09564          2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV   37 (444)
T ss_pred             eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence            589999999999999999874 35699999998753

>PRK13984 putative oxidoreductase; Provisional

Probab=94.48  E-value=0.055  Score=54.92  Aligned_cols=38  Identities=24%  Similarity=0.270  Sum_probs=33.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ....+++|||+|++|+.+|..|.+ .+.+|+|+|+....
T Consensus       281 ~~~~~v~IIGaG~aGl~aA~~L~~-~G~~v~vie~~~~~  318 (604)
T PRK13984        281 KKNKKVAIVGSGPAGLSAAYFLAT-MGYEVTVYESLSKP  318 (604)
T ss_pred             cCCCeEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCCC
Confidence            456789999999999999999999 59999999987643

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=94.36  E-value=0.053  Score=51.97  Aligned_cols=36  Identities=19%  Similarity=0.340  Sum_probs=30.3

Q ss_pred             ccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~   90 (284)
                      -+++|||+|+||+.+|..|.+. ...+|+|+++....
T Consensus         4 ~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~   40 (396)
T PRK09754          4 KTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHL   40 (396)
T ss_pred             CcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCC
Confidence            5799999999999999999984 34589999987654

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=94.32  E-value=0.049  Score=53.04  Aligned_cols=35  Identities=17%  Similarity=0.470  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~   90 (284)
                      .++|||+|++|..+|.+|.+. ++.+|+|||+....
T Consensus         3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~   38 (438)
T PRK13512          3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM   38 (438)
T ss_pred             eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence            689999999999999999863 57899999998754

>KOG1335|consensus

Probab=94.27  E-value=0.047  Score=52.49  Aligned_cols=35  Identities=37%  Similarity=0.605  Sum_probs=32.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      .+||++|||+|++|-++|.+-++ .+.+...+|...
T Consensus        38 ~d~DvvvIG~GpGGyvAAikAaQ-lGlkTacvEkr~   72 (506)
T KOG1335|consen   38 NDYDVVVIGGGPGGYVAAIKAAQ-LGLKTACVEKRG   72 (506)
T ss_pred             ccCCEEEECCCCchHHHHHHHHH-hcceeEEEeccC
Confidence            57999999999999999999999 699999999844

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=94.16  E-value=0.069  Score=53.78  Aligned_cols=36  Identities=28%  Similarity=0.395  Sum_probs=31.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ...-+++|||+|++|+.+|..|++ .+.+|+|+|+.+
T Consensus       135 ~~g~~V~VIGaGpaGL~aA~~l~~-~G~~V~v~e~~~  170 (564)
T PRK12771        135 DTGKRVAVIGGGPAGLSAAYHLRR-MGHAVTIFEAGP  170 (564)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEecCC
Confidence            445689999999999999999998 589999999754

>KOG1276|consensus

Probab=94.14  E-value=0.062  Score=52.24  Aligned_cols=38  Identities=26%  Similarity=0.466  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~   90 (284)
                      ..-+++|||+|.+|+.+|..|++. ++..|.|.|+++.-
T Consensus        10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~Rv   48 (491)
T KOG1276|consen   10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRV   48 (491)
T ss_pred             ecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcc
Confidence            346899999999999999999985 56678889998865

>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B

Probab=94.14  E-value=0.035  Score=52.61  Aligned_cols=37  Identities=32%  Similarity=0.302  Sum_probs=27.5

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .||+|+||.||+++++|..|.+....+++.||+-+..
T Consensus         2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f   38 (341)
T PF13434_consen    2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF   38 (341)
T ss_dssp             EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred             ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence            5899999999999999999999766999999987754

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=94.06  E-value=0.067  Score=51.88  Aligned_cols=38  Identities=18%  Similarity=0.422  Sum_probs=32.7

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ....++||||+|.+|+.+|.+|.. ...+|+|||.....
T Consensus         8 ~~~~~vVIvGgG~aGl~~a~~L~~-~~~~ItlI~~~~~~   45 (424)
T PTZ00318          8 LKKPNVVVLGTGWAGAYFVRNLDP-KKYNITVISPRNHM   45 (424)
T ss_pred             CCCCeEEEECCCHHHHHHHHHhCc-CCCeEEEEcCCCCc
Confidence            456799999999999999999976 47899999987654

>PF13454 NAD_binding_9: FAD-NAD(P)-binding

Probab=93.89  E-value=0.064  Score=44.76  Aligned_cols=31  Identities=32%  Similarity=0.624  Sum_probs=26.8

Q ss_pred             EEECCChHHHHHHHHHhcC----CCCeEEEeccCC
Q psy4112          58 VIIGGGVGGSVVANRLSEN----PKWKVLLLESGE   88 (284)
Q Consensus        58 iivg~G~~g~~~a~~l~~~----~~~~vl~lE~G~   88 (284)
                      +|||+|++|+.++.+|.+.    ...+|.|+|..+
T Consensus         1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~   35 (156)
T PF13454_consen    1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSP   35 (156)
T ss_pred             CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCC
Confidence            5999999999999999986    367899999843

>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein

Probab=93.64  E-value=0.094  Score=49.36  Aligned_cols=35  Identities=29%  Similarity=0.484  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHhc--CCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSE--NPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~--~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|.+|..+|.+|.+  .+..+|+|||+....
T Consensus         1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~   37 (364)
T TIGR03169         1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT   37 (364)
T ss_pred             CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence            48999999999999999964  257899999987754

Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.

>KOG1800|consensus

Probab=93.64  E-value=0.089  Score=50.55  Aligned_cols=37  Identities=24%  Similarity=0.279  Sum_probs=32.9

Q ss_pred             cccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE   90 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~   90 (284)
                      ...++|||||+||..+|.+|.+. ++.+|-|+|.-+.+
T Consensus        20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP   57 (468)
T KOG1800|consen   20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP   57 (468)
T ss_pred             CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence            35899999999999999999984 78999999998865

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=93.25  E-value=0.11  Score=49.37  Aligned_cols=35  Identities=17%  Similarity=0.397  Sum_probs=29.7

Q ss_pred             ccEEEECCChHHHHHHHHHhc-CCCCeEEEeccCCc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSE-NPKWKVLLLESGED   89 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~-~~~~~vl~lE~G~~   89 (284)
                      .+++|||+|+||..+|.+|.+ ++..+|+||+..+.
T Consensus         3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~   38 (377)
T PRK04965          3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG   38 (377)
T ss_pred             CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence            489999999999999999986 35678999987654

>KOG4254|consensus

Probab=93.11  E-value=0.077  Score=51.97  Aligned_cols=38  Identities=37%  Similarity=0.436  Sum_probs=34.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..+||.+|||+|.-|+.+|..|++ -+.+|.|+|+....
T Consensus        12 ~~~ydavvig~GhnGL~aaayl~r-~g~~V~vlerrhv~   49 (561)
T KOG4254|consen   12 KPEYDAVVIGGGHNGLTAAAYLAR-YGQSVAVLERRHVI   49 (561)
T ss_pred             CcccceEEecCCccchhHHHHHHh-cCcceEEEEEeeec
Confidence            568999999999999999999999 59999999998443

>KOG3851|consensus

Probab=93.09  E-value=0.086  Score=49.69  Aligned_cols=39  Identities=26%  Similarity=0.497  Sum_probs=34.1

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~   90 (284)
                      .+++.++|||+|.+|+.+|+++.+. +.-+|.+||--.+.
T Consensus        37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~H   76 (446)
T KOG3851|consen   37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDH   76 (446)
T ss_pred             ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhc
Confidence            5789999999999999999999975 56689999977654

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=92.85  E-value=0.1  Score=51.46  Aligned_cols=37  Identities=24%  Similarity=0.344  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..-.|.||||||+|+.+|..|+. .++.|++.|+-+..
T Consensus       122 tg~~VaviGaGPAGl~~a~~L~~-~G~~Vtv~e~~~~~  158 (457)
T COG0493         122 TGKKVAVIGAGPAGLAAADDLSR-AGHDVTVFERVALD  158 (457)
T ss_pred             CCCEEEEECCCchHhhhHHHHHh-CCCeEEEeCCcCCC
Confidence            34789999999999999999999 59999999987755

>KOG4405|consensus

Probab=92.70  E-value=0.12  Score=50.13  Aligned_cols=39  Identities=36%  Similarity=0.470  Sum_probs=35.6

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ++.+||+||||.|..=+++|+.-++ .+.+||-|+..++.
T Consensus         5 lP~~fDvVViGTGlpESilAAAcSr-sG~sVLHlDsn~yY   43 (547)
T KOG4405|consen    5 LPEEFDVVVIGTGLPESILAAACSR-SGSSVLHLDSNEYY   43 (547)
T ss_pred             CchhccEEEEcCCCcHHHHHHHhhh-cCCceEeccCcccc
Confidence            5778999999999999999999998 69999999998765

>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]

Probab=92.53  E-value=0.13  Score=50.48  Aligned_cols=41  Identities=32%  Similarity=0.530  Sum_probs=35.8

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcC----CCCeEEEeccCCccc
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSEN----PKWKVLLLESGEDEN   91 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~----~~~~vl~lE~G~~~~   91 (284)
                      ....+|+||||+|++|+-+|.+++.+    +..+|+++|.|.+..
T Consensus        15 ~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~~   59 (486)
T COG2509          15 MNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDIE   59 (486)
T ss_pred             hhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccchh
Confidence            45679999999999999999999975    478999999997654

>KOG2311|consensus

Probab=92.20  E-value=0.13  Score=50.76  Aligned_cols=35  Identities=37%  Similarity=0.534  Sum_probs=28.4

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      ...|||||||+|-|||-+|..-++- +-+.++|-..
T Consensus        26 ~~~~dVvVIGgGHAG~EAAaAaaR~-Ga~TlLlT~~   60 (679)
T KOG2311|consen   26 TSTYDVVVIGGGHAGCEAAAAAARL-GARTLLLTHN   60 (679)
T ss_pred             CCcccEEEECCCccchHHHHHHHhc-CCceEEeecc
Confidence            5679999999999999999988884 6666666543

>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]

Probab=91.89  E-value=0.14  Score=48.51  Aligned_cols=34  Identities=26%  Similarity=0.370  Sum_probs=31.2

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      -+.|||+|.||+-+|+.+++ .++.|.+.|..+..
T Consensus         5 ~i~VIGaGLAGSEAAwqiA~-~Gv~V~L~EMRp~k   38 (439)
T COG1206           5 PINVIGAGLAGSEAAWQIAK-RGVPVILYEMRPVK   38 (439)
T ss_pred             ceEEEcccccccHHHHHHHH-cCCcEEEEEccccc
Confidence            47899999999999999999 69999999999865

>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]

Probab=91.38  E-value=0.24  Score=44.12  Aligned_cols=34  Identities=38%  Similarity=0.612  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|..+|..|++ .+..|++||.-+..
T Consensus         2 ~iiIiG~G~vG~~va~~L~~-~g~~Vv~Id~d~~~   35 (225)
T COG0569           2 KIIIIGAGRVGRSVARELSE-EGHNVVLIDRDEER   35 (225)
T ss_pred             EEEEECCcHHHHHHHHHHHh-CCCceEEEEcCHHH
Confidence            58999999999999999999 48999999987654

>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1

Probab=91.22  E-value=0.28  Score=40.11  Aligned_cols=31  Identities=35%  Similarity=0.537  Sum_probs=28.9

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          57 FVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ++|+|+|..|+..|++|++ .+.+|.++-++.
T Consensus         1 I~I~G~GaiG~~~a~~L~~-~g~~V~l~~r~~   31 (151)
T PF02558_consen    1 ILIIGAGAIGSLYAARLAQ-AGHDVTLVSRSP   31 (151)
T ss_dssp             EEEESTSHHHHHHHHHHHH-TTCEEEEEESHH
T ss_pred             CEEECcCHHHHHHHHHHHH-CCCceEEEEccc
Confidence            5799999999999999999 699999999887

1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....

>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]

Probab=90.75  E-value=0.31  Score=45.74  Aligned_cols=37  Identities=27%  Similarity=0.339  Sum_probs=33.5

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCccc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDEN   91 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~   91 (284)
                      .-+++|||+|..|+.+|..|.+ .+.+|.++|......
T Consensus       136 ~~~v~vvG~G~~gle~A~~~~~-~G~~v~l~e~~~~~~  172 (415)
T COG0446         136 PKDVVVVGAGPIGLEAAEAAAK-RGKKVTLIEAADRLG  172 (415)
T ss_pred             cCeEEEECCcHHHHHHHHHHHH-cCCeEEEEEcccccc
Confidence            3689999999999999999999 599999999998763

>KOG2755|consensus

Probab=90.43  E-value=0.2  Score=45.98  Aligned_cols=35  Identities=29%  Similarity=0.646  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~   90 (284)
                      .+||||+|.||.++|..|+.. |...||+|-+-+..
T Consensus         1 kfivvgggiagvscaeqla~~~psa~illitass~v   36 (334)
T KOG2755|consen    1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFV   36 (334)
T ss_pred             CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHH
Confidence            379999999999999999974 77899999988753

>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.25  E-value=0.36  Score=47.56  Aligned_cols=37  Identities=27%  Similarity=0.472  Sum_probs=30.4

Q ss_pred             cccEEEECCChHHHHHHHHHhcC--CCCeEEEeccCCcc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSEN--PKWKVLLLESGEDE   90 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~--~~~~vl~lE~G~~~   90 (284)
                      .++|+|||+|++|..+|..|.+.  +..+|.|+|.-+..
T Consensus         1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~   39 (474)
T COG4529           1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF   39 (474)
T ss_pred             CceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence            37899999999999999999985  23349999987654

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=89.91  E-value=0.42  Score=45.85  Aligned_cols=37  Identities=27%  Similarity=0.422  Sum_probs=33.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..||+||+|.|..=|+++.+|+. .+.+||+|+.....
T Consensus         5 ~~yDvii~GTgl~esils~~Ls~-~~k~VlhiD~Nd~Y   41 (434)
T COG5044           5 TLYDVIILGTGLRESILSAALSW-DGKNVLHIDKNDYY   41 (434)
T ss_pred             ccccEEEecccHHHHHHHHHhhh-cCceEEEEeCCCcc
Confidence            36999999999999999999998 59999999998754

>KOG2844|consensus

Probab=89.63  E-value=0.37  Score=49.40  Aligned_cols=35  Identities=40%  Similarity=0.546  Sum_probs=29.0

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcCCCCe-EEEecc
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSENPKWK-VLLLES   86 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~-vl~lE~   86 (284)
                      .+...|++|||+|..||.+|..|++ .+.+ ++++|.
T Consensus        36 ~~~~A~vvViggG~~g~~~~yhlak-~g~k~avlle~   71 (856)
T KOG2844|consen   36 LPSTADVVVIGGGSLGCSTAYHLAK-RGMKGAVLLER   71 (856)
T ss_pred             CCCcccEEEEcCCchhHHHHHHHHH-ccccceEEEee
Confidence            5667999999999999999999999 5888 444443

>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]

Probab=89.61  E-value=0.21  Score=47.69  Aligned_cols=34  Identities=26%  Similarity=0.498  Sum_probs=26.3

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeE-EEecc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKV-LLLES   86 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~v-l~lE~   86 (284)
                      ...||++|||+|++|.++|..-++ ++.+. ++-|+
T Consensus       209 k~~yDVLvVGgGPAgaaAAiYaAR-KGiRTGl~aer  243 (520)
T COG3634         209 KDAYDVLVVGGGPAGAAAAIYAAR-KGIRTGLVAER  243 (520)
T ss_pred             cCCceEEEEcCCcchhHHHHHHHh-hcchhhhhhhh
Confidence            456999999999999999999888 46543 33343

>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional

Probab=89.46  E-value=0.47  Score=45.45  Aligned_cols=34  Identities=26%  Similarity=0.387  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|.+ .+.+|.|+|.++..
T Consensus       146 ~vvViGgG~ig~E~A~~l~~-~g~~Vtlv~~~~~~  179 (396)
T PRK09754        146 SVVIVGAGTIGLELAASATQ-RRCKVTVIELAATV  179 (396)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCcc
Confidence            58999999999999999998 58999999998753

>KOG2404|consensus

Probab=89.42  E-value=0.37  Score=45.61  Aligned_cols=34  Identities=32%  Similarity=0.488  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      -+||||+|.||++++.++.. .+..|++||.-...
T Consensus        11 pvvVIGgGLAGLsasn~iin-~gg~V~llek~~s~   44 (477)
T KOG2404|consen   11 PVVVIGGGLAGLSASNDIIN-KGGIVILLEKAGSI   44 (477)
T ss_pred             cEEEECCchhhhhhHHHHHh-cCCeEEEEeccCCc
Confidence            58999999999999999998 57779999986654

>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional

Probab=89.15  E-value=0.53  Score=44.69  Aligned_cols=34  Identities=24%  Similarity=0.416  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|.+ .+.+|.++|.++..
T Consensus       143 ~vvViGgG~~g~e~A~~L~~-~g~~Vtlv~~~~~~  176 (377)
T PRK04965        143 RVLVVGGGLIGTELAMDLCR-AGKAVTLVDNAASL  176 (377)
T ss_pred             eEEEECCCHHHHHHHHHHHh-cCCeEEEEecCCcc
Confidence            58999999999999999998 58999999998753

>KOG1439|consensus

Probab=88.93  E-value=0.25  Score=47.70  Aligned_cols=38  Identities=26%  Similarity=0.439  Sum_probs=34.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++||+||+|.|..=|+++..|+. .+.+||.|++.+..
T Consensus         2 deeyDvivlGTgl~ecilS~~Ls~-~gkkVLhiDrN~yY   39 (440)
T KOG1439|consen    2 DEEYDVIVLGTGLTECILSGALSV-DGKKVLHIDRNDYY   39 (440)
T ss_pred             CCceeEEEEcCCchhheeeeeeee-cCcEEEEEeCCCCC
Confidence            356999999999999999999999 59999999998765

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=88.93  E-value=0.27  Score=47.80  Aligned_cols=38  Identities=34%  Similarity=0.595  Sum_probs=31.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcC------------CCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSEN------------PKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~------------~~~~vl~lE~G~~~   90 (284)
                      ...+++|||+|++|.-+|.+|++.            ...+|.|+|+|+..
T Consensus       154 ~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I  203 (405)
T COG1252         154 ALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI  203 (405)
T ss_pred             ceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh
Confidence            346899999999999999999873            12499999999875

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=88.34  E-value=0.59  Score=45.86  Aligned_cols=34  Identities=32%  Similarity=0.446  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|.+|+-+|..|++ .+.+|.+||+++..
T Consensus       182 ~vvIIGgG~~G~E~A~~l~~-~g~~Vtli~~~~~i  215 (472)
T PRK05976        182 SLVIVGGGVIGLEWASMLAD-FGVEVTVVEAADRI  215 (472)
T ss_pred             EEEEECCCHHHHHHHHHHHH-cCCeEEEEEecCcc
Confidence            58999999999999999998 58999999998753

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=88.18  E-value=0.63  Score=45.12  Aligned_cols=34  Identities=29%  Similarity=0.306  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+.+|..|++ .+.+|.++|+++..
T Consensus       159 ~vvIIGgG~~g~e~A~~l~~-~g~~Vtli~~~~~~  192 (438)
T PRK07251        159 RLGIIGGGNIGLEFAGLYNK-LGSKVTVLDAASTI  192 (438)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCcc
Confidence            58999999999999999998 58999999998643

>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate

Probab=88.07  E-value=0.66  Score=38.73  Aligned_cols=31  Identities=32%  Similarity=0.481  Sum_probs=27.6

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          57 FVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      +.|+|+|..|..+|..|+++ +.+|.+..+-+
T Consensus         2 I~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~   32 (157)
T PF01210_consen    2 IAVIGAGNWGTALAALLADN-GHEVTLWGRDE   32 (157)
T ss_dssp             EEEESSSHHHHHHHHHHHHC-TEEEEEETSCH
T ss_pred             EEEECcCHHHHHHHHHHHHc-CCEEEEEeccH
Confidence            67999999999999999994 88999987654

This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....

>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]

Probab=87.53  E-value=0.77  Score=44.65  Aligned_cols=36  Identities=31%  Similarity=0.550  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHhcCC-CCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENP-KWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~-~~~vl~lE~G~~~   90 (284)
                      -.++|||+|.+|+.+|.+|.+.+ +.+|++||.-...
T Consensus         4 ~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h   40 (405)
T COG1252           4 KRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH   40 (405)
T ss_pred             ceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc
Confidence            45899999999999999999852 5889999988765

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=87.05  E-value=0.83  Score=44.70  Aligned_cols=34  Identities=32%  Similarity=0.411  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+.+|..|.+ .+.+|.++|+++..
T Consensus       172 ~vvIIGgG~iG~E~A~~l~~-~g~~Vtli~~~~~l  205 (458)
T PRK06912        172 SLLIVGGGVIGCEFASIYSR-LGTKVTIVEMAPQL  205 (458)
T ss_pred             cEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCCc
Confidence            59999999999999999998 58999999998653

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=86.96  E-value=0.8  Score=44.59  Aligned_cols=35  Identities=34%  Similarity=0.361  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      -+++|||+|..|+.+|..|.+ .+.+|.++|+++..
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~-~g~~Vtli~~~~~~  205 (461)
T TIGR01350       171 ESLVIIGGGVIGIEFASIFAS-LGSKVTVIEMLDRI  205 (461)
T ss_pred             CeEEEECCCHHHHHHHHHHHH-cCCcEEEEEcCCCC
Confidence            368999999999999999998 48999999998753

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PRK10669 putative cation:proton antiport protein; Provisional

Probab=86.78  E-value=4  Score=41.08  Aligned_cols=35  Identities=17%  Similarity=0.331  Sum_probs=30.8

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      +-.+||+|.|..|..+|.+|.+ .+..|+++|.-+.
T Consensus       417 ~~hiiI~G~G~~G~~la~~L~~-~g~~vvvId~d~~  451 (558)
T PRK10669        417 CNHALLVGYGRVGSLLGEKLLA-AGIPLVVIETSRT  451 (558)
T ss_pred             CCCEEEECCChHHHHHHHHHHH-CCCCEEEEECCHH
Confidence            4678999999999999999998 4899999997654

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=86.74  E-value=0.84  Score=44.93  Aligned_cols=34  Identities=18%  Similarity=0.267  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++ .+.+|.|||+++..
T Consensus       176 ~vvIiGgG~iG~E~A~~l~~-~G~~Vtlv~~~~~i  209 (471)
T PRK06467        176 RLLVMGGGIIGLEMGTVYHR-LGSEVDVVEMFDQV  209 (471)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCCEEEEecCCCC
Confidence            58999999999999999998 59999999998753

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=86.67  E-value=0.75  Score=48.41  Aligned_cols=34  Identities=12%  Similarity=0.361  Sum_probs=28.9

Q ss_pred             EEEECCChHHHHHHHHHhcC--CCCeEEEeccCCcc
Q psy4112          57 FVIIGGGVGGSVVANRLSEN--PKWKVLLLESGEDE   90 (284)
Q Consensus        57 ~iivg~G~~g~~~a~~l~~~--~~~~vl~lE~G~~~   90 (284)
                      ++|||+|++|..+|.+|.+.  .+.+|+|||..+..
T Consensus         1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~   36 (785)
T TIGR02374         1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHP   36 (785)
T ss_pred             CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCC
Confidence            58999999999999988763  35799999988765

>PRK14989 nitrite reductase subunit NirD; Provisional

Probab=86.52  E-value=0.85  Score=48.47  Aligned_cols=35  Identities=17%  Similarity=0.336  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHhcC---CCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSEN---PKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~---~~~~vl~lE~G~~~   90 (284)
                      .++|||+|++|..+|.+|.+.   .+.+|+||++.+..
T Consensus         5 kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~   42 (847)
T PRK14989          5 RLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRI   42 (847)
T ss_pred             cEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCC
Confidence            799999999999999999753   35799999988765

>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1

Probab=86.43  E-value=0.99  Score=38.72  Aligned_cols=32  Identities=22%  Similarity=0.447  Sum_probs=26.9

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          57 FVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      +.|||+|..|...|..++. .+.+|.++|..+.
T Consensus         2 V~ViGaG~mG~~iA~~~a~-~G~~V~l~d~~~~   33 (180)
T PF02737_consen    2 VAVIGAGTMGRGIAALFAR-AGYEVTLYDRSPE   33 (180)
T ss_dssp             EEEES-SHHHHHHHHHHHH-TTSEEEEE-SSHH
T ss_pred             EEEEcCCHHHHHHHHHHHh-CCCcEEEEECChH
Confidence            6799999999999999999 5999999998654

1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=86.40  E-value=1.1  Score=34.72  Aligned_cols=32  Identities=31%  Similarity=0.469  Sum_probs=27.7

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          57 FVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      |||+|.|..|..+|..|.+ .+.+|+++|.-+.
T Consensus         1 vvI~G~g~~~~~i~~~L~~-~~~~vvvid~d~~   32 (116)
T PF02254_consen    1 VVIIGYGRIGREIAEQLKE-GGIDVVVIDRDPE   32 (116)
T ss_dssp             EEEES-SHHHHHHHHHHHH-TTSEEEEEESSHH
T ss_pred             eEEEcCCHHHHHHHHHHHh-CCCEEEEEECCcH
Confidence            6899999999999999999 5789999997754

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>PRK07846 mycothione reductase; Reviewed

Probab=86.37  E-value=0.92  Score=44.44  Aligned_cols=35  Identities=23%  Similarity=0.296  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      -.++|||+|..|+.+|..|++ .+.+|.++|.++..
T Consensus       167 ~~vvIIGgG~iG~E~A~~l~~-~G~~Vtli~~~~~l  201 (451)
T PRK07846        167 ESLVIVGGGFIAAEFAHVFSA-LGVRVTVVNRSGRL  201 (451)
T ss_pred             CeEEEECCCHHHHHHHHHHHH-cCCeEEEEEcCCcc
Confidence            368999999999999999998 58999999998753

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=85.97  E-value=0.97  Score=44.22  Aligned_cols=33  Identities=24%  Similarity=0.194  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++|||+|..|+-+|..|++ -+.+|.+||+++.
T Consensus       168 ~vvIIGgG~iG~E~A~~l~~-~g~~Vtli~~~~~  200 (450)
T TIGR01421       168 RVVIVGAGYIAVELAGVLHG-LGSETHLVIRHER  200 (450)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCcEEEEecCCC
Confidence            58999999999999999998 5899999999864

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>TIGR02053 MerA mercuric reductase

Probab=85.93  E-value=0.98  Score=44.12  Aligned_cols=34  Identities=24%  Similarity=0.408  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus       168 ~vvIIGgG~~g~E~A~~l~~-~g~~Vtli~~~~~~  201 (463)
T TIGR02053       168 SLAVIGGGAIGVELAQAFAR-LGSEVTILQRSDRL  201 (463)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCcEEEEEcCCcC
Confidence            58999999999999999998 58999999998643

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase

Probab=85.89  E-value=1  Score=43.44  Aligned_cols=34  Identities=38%  Similarity=0.471  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|.+|+.+|..|++ .+.+|.+++.+...
T Consensus       139 ~vvViGgG~~g~e~A~~l~~-~g~~Vtli~~~~~~  172 (427)
T TIGR03385       139 NVVIIGGGYIGIEMAEALRE-RGKNVTLIHRSERI  172 (427)
T ss_pred             eEEEECCCHHHHHHHHHHHh-CCCcEEEEECCccc
Confidence            68999999999999999998 58899999988643

Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.

>PRK05708 2-dehydropantoate 2-reductase; Provisional

Probab=85.82  E-value=1  Score=41.89  Aligned_cols=33  Identities=30%  Similarity=0.392  Sum_probs=29.6

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      -.+.|||+|..|+..|.+|++ .+..|.++.++.
T Consensus         3 m~I~IiGaGaiG~~~a~~L~~-~G~~V~lv~r~~   35 (305)
T PRK05708          3 MTWHILGAGSLGSLWACRLAR-AGLPVRLILRDR   35 (305)
T ss_pred             ceEEEECCCHHHHHHHHHHHh-CCCCeEEEEech
Confidence            358999999999999999999 588999999875

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=85.63  E-value=1.2  Score=37.82  Aligned_cols=35  Identities=23%  Similarity=0.323  Sum_probs=27.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ..-.++|||+|.++.-+|..|++. +.+|.++=+.+
T Consensus       166 ~~k~V~VVG~G~SA~d~a~~l~~~-g~~V~~~~R~~  200 (203)
T PF13738_consen  166 KGKRVVVVGGGNSAVDIAYALAKA-GKSVTLVTRSP  200 (203)
T ss_dssp             TTSEEEEE--SHHHHHHHHHHTTT-CSEEEEEESS-
T ss_pred             CCCcEEEEcChHHHHHHHHHHHhh-CCEEEEEecCC
Confidence            346799999999999999999995 78999887654

...

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=85.43  E-value=1.1  Score=43.98  Aligned_cols=34  Identities=24%  Similarity=0.257  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       176 ~vvIIGgG~ig~E~A~~l~~-~G~~Vtlie~~~~i  209 (466)
T PRK06115        176 HLVVIGAGVIGLELGSVWRR-LGAQVTVVEYLDRI  209 (466)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCeEEEEeCCCCC
Confidence            57999999999999999998 58999999988643

>PRK13512 coenzyme A disulfide reductase; Provisional

Probab=85.38  E-value=1.1  Score=43.71  Aligned_cols=33  Identities=18%  Similarity=0.256  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++.
T Consensus       150 ~vvViGgG~ig~E~A~~l~~-~g~~Vtli~~~~~  182 (438)
T PRK13512        150 KALVVGAGYISLEVLENLYE-RGLHPTLIHRSDK  182 (438)
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCCcEEEEecccc
Confidence            58899999999999999998 5899999998864

>KOG0399|consensus

Probab=85.32  E-value=0.99  Score=49.06  Aligned_cols=37  Identities=24%  Similarity=0.383  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .-..+.|||+|++|+.+|..|-+ .+..|.|.|+-...
T Consensus      1784 tg~~vaiigsgpaglaaadqlnk-~gh~v~vyer~dr~ 1820 (2142)
T KOG0399|consen 1784 TGKRVAIIGSGPAGLAAADQLNK-AGHTVTVYERSDRV 1820 (2142)
T ss_pred             cCcEEEEEccCchhhhHHHHHhh-cCcEEEEEEecCCc
Confidence            35789999999999999999999 59999999987654

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=85.23  E-value=1.1  Score=43.61  Aligned_cols=34  Identities=26%  Similarity=0.322  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       174 ~vvVvGgG~~g~E~A~~l~~-~g~~Vtli~~~~~~  207 (462)
T PRK06416        174 SLVVIGGGYIGVEFASAYAS-LGAEVTIVEALPRI  207 (462)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCeEEEEEcCCCc
Confidence            58999999999999999998 58999999998754

>PRK06370 mercuric reductase; Validated

Probab=85.13  E-value=1.1  Score=43.70  Aligned_cols=34  Identities=32%  Similarity=0.397  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++ .+.+|.++|.++..
T Consensus       173 ~vvVIGgG~~g~E~A~~l~~-~G~~Vtli~~~~~~  206 (463)
T PRK06370        173 HLVIIGGGYIGLEFAQMFRR-FGSEVTVIERGPRL  206 (463)
T ss_pred             EEEEECCCHHHHHHHHHHHH-cCCeEEEEEcCCCC
Confidence            57999999999999999998 58999999998753

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=85.02  E-value=1.2  Score=43.52  Aligned_cols=34  Identities=26%  Similarity=0.357  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++ .+.+|.++|.++..
T Consensus       177 ~v~IiGgG~~g~E~A~~l~~-~g~~Vtli~~~~~~  210 (461)
T PRK05249        177 SLIIYGAGVIGCEYASIFAA-LGVKVTLINTRDRL  210 (461)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCCc
Confidence            58999999999999999998 59999999998743

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=85.02  E-value=1.2  Score=43.72  Aligned_cols=34  Identities=26%  Similarity=0.237  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+.+|..|++ .+.+|.|+|.++..
T Consensus       174 ~vvVIGgG~ig~E~A~~l~~-~G~~Vtlv~~~~~~  207 (466)
T PRK07818        174 SIVIAGAGAIGMEFAYVLKN-YGVDVTIVEFLDRA  207 (466)
T ss_pred             eEEEECCcHHHHHHHHHHHH-cCCeEEEEecCCCc
Confidence            58999999999999999998 58999999987643

>PRK06249 2-dehydropantoate 2-reductase; Provisional

Probab=84.83  E-value=1.3  Score=41.22  Aligned_cols=33  Identities=24%  Similarity=0.314  Sum_probs=29.6

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      -.+.|||+|..|+..|.+|++ .+..|.++.++.
T Consensus         6 m~I~IiG~GaiG~~lA~~L~~-~g~~V~~~~r~~   38 (313)
T PRK06249          6 PRIGIIGTGAIGGFYGAMLAR-AGFDVHFLLRSD   38 (313)
T ss_pred             cEEEEECCCHHHHHHHHHHHH-CCCeEEEEEeCC
Confidence            358999999999999999999 589999998875

>KOG2495|consensus

Probab=83.95  E-value=0.51  Score=46.06  Aligned_cols=38  Identities=32%  Similarity=0.507  Sum_probs=31.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcC-------------CCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSEN-------------PKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~-------------~~~~vl~lE~G~~~   90 (284)
                      .-..++||||||+|.-.|.+|+.-             ...+|.+|||++..
T Consensus       217 RlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i  267 (491)
T KOG2495|consen  217 RLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI  267 (491)
T ss_pred             heEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH
Confidence            346799999999999999999861             35689999999854

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=83.76  E-value=1.4  Score=42.89  Aligned_cols=34  Identities=35%  Similarity=0.518  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       171 ~v~VIGgG~~g~E~A~~l~~-~g~~Vtli~~~~~~  204 (460)
T PRK06292        171 SLAVIGGGVIGLELGQALSR-LGVKVTVFERGDRI  204 (460)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCcEEEEecCCCc
Confidence            58999999999999999998 58999999998743

>PRK06522 2-dehydropantoate 2-reductase; Reviewed

Probab=83.32  E-value=1.5  Score=39.86  Aligned_cols=30  Identities=23%  Similarity=0.425  Sum_probs=27.3

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          57 FVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      +.|||+|..|+.+|..|++ .+..|.++.+.
T Consensus         3 I~IiG~G~~G~~~a~~L~~-~g~~V~~~~r~   32 (304)
T PRK06522          3 IAILGAGAIGGLFGAALAQ-AGHDVTLVARR   32 (304)
T ss_pred             EEEECCCHHHHHHHHHHHh-CCCeEEEEECC
Confidence            7899999999999999998 58899999873

>PRK12921 2-dehydropantoate 2-reductase; Provisional

Probab=83.13  E-value=1.5  Score=40.07  Aligned_cols=29  Identities=28%  Similarity=0.462  Sum_probs=26.8

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEecc
Q psy4112          57 FVIIGGGVGGSVVANRLSENPKWKVLLLES   86 (284)
Q Consensus        57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~   86 (284)
                      +.|||+|..|+.+|..|++ .+.+|.++.+
T Consensus         3 I~IiG~G~iG~~~a~~L~~-~g~~V~~~~r   31 (305)
T PRK12921          3 IAVVGAGAVGGTFGGRLLE-AGRDVTFLVR   31 (305)
T ss_pred             EEEECCCHHHHHHHHHHHH-CCCceEEEec
Confidence            7899999999999999999 5889999887

>TIGR03452 mycothione_red mycothione reductase

Probab=83.08  E-value=1.6  Score=42.79  Aligned_cols=33  Identities=24%  Similarity=0.373  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++|||+|..|+-+|..|++ .+.+|.+||.++.
T Consensus       171 ~vvVIGgG~ig~E~A~~l~~-~G~~Vtli~~~~~  203 (452)
T TIGR03452       171 SLVIVGGGYIAAEFAHVFSA-LGTRVTIVNRSTK  203 (452)
T ss_pred             cEEEECCCHHHHHHHHHHHh-CCCcEEEEEccCc
Confidence            68999999999999999998 5899999998865

Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=82.55  E-value=1.7  Score=42.34  Aligned_cols=34  Identities=26%  Similarity=0.254  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++ .+.+|.++|.++..
T Consensus       168 ~vvVIGgG~~g~E~A~~l~~-~G~~Vtli~~~~~~  201 (446)
T TIGR01424       168 SILILGGGYIAVEFAGIWRG-LGVQVTLIYRGELI  201 (446)
T ss_pred             eEEEECCcHHHHHHHHHHHH-cCCeEEEEEeCCCC
Confidence            48999999999999999998 58999999998753

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>KOG0404|consensus

Probab=82.52  E-value=1.3  Score=40.01  Aligned_cols=33  Identities=30%  Similarity=0.330  Sum_probs=29.1

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      -.++|||+|+++-.+|..+++ +..+-+|+|-+-
T Consensus         9 e~v~IiGSGPAa~tAAiYaar-aelkPllfEG~~   41 (322)
T KOG0404|consen    9 ENVVIIGSGPAAHTAAIYAAR-AELKPLLFEGMM   41 (322)
T ss_pred             eeEEEEccCchHHHHHHHHhh-cccCceEEeeee
Confidence            368999999999999999998 699999999653

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=82.41  E-value=1.7  Score=38.94  Aligned_cols=35  Identities=23%  Similarity=0.248  Sum_probs=30.6

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      -.++|||+|..|+-+|..|++ .+.+|.++++++..
T Consensus       142 ~~v~ViG~G~~~~e~a~~l~~-~~~~V~~v~~~~~~  176 (300)
T TIGR01292       142 KEVAVVGGGDSAIEEALYLTR-IAKKVTLVHRRDKF  176 (300)
T ss_pred             CEEEEECCChHHHHHHHHHHh-hcCEEEEEEeCccc
Confidence            378999999999999999998 48899999988643

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>PRK09564 coenzyme A disulfide reductase; Reviewed

Probab=82.32  E-value=1.7  Score=41.97  Aligned_cols=34  Identities=21%  Similarity=0.258  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      -.++|||+|..|+-+|..|.+ .+.+|.++|.++.
T Consensus       150 ~~vvVvGgG~~g~e~A~~l~~-~g~~Vtli~~~~~  183 (444)
T PRK09564        150 KNIVIIGAGFIGLEAVEAAKH-LGKNVRIIQLEDR  183 (444)
T ss_pred             CEEEEECCCHHHHHHHHHHHh-cCCcEEEEeCCcc
Confidence            368999999999999999998 5889999998764

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=82.23  E-value=1.7  Score=43.39  Aligned_cols=34  Identities=32%  Similarity=0.424  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++ -+.+|.|+|.++..
T Consensus       354 ~VvViGgG~~g~E~A~~L~~-~g~~Vtli~~~~~l  387 (515)
T TIGR03140       354 DVAVIGGGNSGIEAAIDLAG-IVRHVTVLEFADEL  387 (515)
T ss_pred             EEEEECCcHHHHHHHHHHHh-cCcEEEEEEeCCcC
Confidence            79999999999999999998 48899999987543

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated

Probab=82.14  E-value=1.7  Score=40.30  Aligned_cols=32  Identities=25%  Similarity=0.337  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      .+.|||+|..|...|..|++ .+.+|.+++..+
T Consensus         4 ~V~VIG~G~mG~~iA~~la~-~G~~V~v~d~~~   35 (308)
T PRK06129          4 SVAIIGAGLIGRAWAIVFAR-AGHEVRLWDADP   35 (308)
T ss_pred             EEEEECccHHHHHHHHHHHH-CCCeeEEEeCCH
Confidence            58899999999999999999 599999998765

>PTZ00318 NADH dehydrogenase-like protein; Provisional

Probab=82.12  E-value=1.6  Score=42.32  Aligned_cols=35  Identities=37%  Similarity=0.648  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHHhcC-------------CCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSEN-------------PKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~-------------~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++.             ++.+|.|+|+++..
T Consensus       175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l  222 (424)
T PTZ00318        175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV  222 (424)
T ss_pred             EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence            689999999999999998851             36899999998653

>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]

Probab=81.94  E-value=2.2  Score=42.22  Aligned_cols=34  Identities=32%  Similarity=0.454  Sum_probs=31.5

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..+|||+|..|+-.|.-+++ -+.+|.|||+++..
T Consensus       175 ~lvIiGgG~IGlE~a~~~~~-LG~~VTiie~~~~i  208 (454)
T COG1249         175 SLVIVGGGYIGLEFASVFAA-LGSKVTVVERGDRI  208 (454)
T ss_pred             EEEEECCCHHHHHHHHHHHH-cCCcEEEEecCCCC
Confidence            38999999999999999999 59999999999875

>PRK07845 flavoprotein disulfide reductase; Reviewed

Probab=81.89  E-value=1.9  Score=42.32  Aligned_cols=34  Identities=29%  Similarity=0.474  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       179 ~vvVIGgG~ig~E~A~~l~~-~g~~Vtli~~~~~~  212 (466)
T PRK07845        179 HLIVVGSGVTGAEFASAYTE-LGVKVTLVSSRDRV  212 (466)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCeEEEEEcCCcC
Confidence            58999999999999999998 58999999988643

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=81.62  E-value=1.9  Score=42.38  Aligned_cols=34  Identities=24%  Similarity=0.240  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+.+|..|++ .+.+|.|+|+++..
T Consensus       185 ~vvVvGgG~~g~E~A~~l~~-~g~~Vtli~~~~~~  218 (475)
T PRK06327        185 KLAVIGAGVIGLELGSVWRR-LGAEVTILEALPAF  218 (475)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCeEEEEeCCCcc
Confidence            68999999999999999998 58999999998743

>PRK06719 precorrin-2 dehydrogenase; Validated

Probab=81.54  E-value=2.3  Score=35.76  Aligned_cols=31  Identities=29%  Similarity=0.249  Sum_probs=27.4

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEec
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLE   85 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE   85 (284)
                      .-.++|||+|..|...|..|.+ .+.+|.||.
T Consensus        13 ~~~vlVvGGG~va~rka~~Ll~-~ga~V~VIs   43 (157)
T PRK06719         13 NKVVVIIGGGKIAYRKASGLKD-TGAFVTVVS   43 (157)
T ss_pred             CCEEEEECCCHHHHHHHHHHHh-CCCEEEEEc
Confidence            4569999999999999999998 589999993

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=81.50  E-value=1.9  Score=43.52  Aligned_cols=33  Identities=30%  Similarity=0.380  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++|||+|..|+-+|..|++ .+.+|.++++++.
T Consensus       145 ~VvVIGgG~~g~E~A~~L~~-~g~~Vtli~~~~~  177 (555)
T TIGR03143       145 DVFVIGGGFAAAEEAVFLTR-YASKVTVIVREPD  177 (555)
T ss_pred             EEEEECCCHHHHHHHHHHHc-cCCEEEEEEeCCc
Confidence            58999999999999999998 5899999999874

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK06116 glutathione reductase; Validated

Probab=81.42  E-value=2  Score=41.83  Aligned_cols=34  Identities=18%  Similarity=0.216  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++ .+.+|.+++.++..
T Consensus       169 ~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~~  202 (450)
T PRK06116        169 RVAVVGAGYIAVEFAGVLNG-LGSETHLFVRGDAP  202 (450)
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCeEEEEecCCCC
Confidence            58899999999999999998 58999999998753

>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=81.14  E-value=2.1  Score=41.63  Aligned_cols=39  Identities=31%  Similarity=0.254  Sum_probs=35.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .+.+|+|.||-||+-+.+|.-|.+..+.+++.||+-+..
T Consensus         3 ~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F   41 (436)
T COG3486           3 AEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF   41 (436)
T ss_pred             CcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence            456999999999999999999999767899999999865

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=81.07  E-value=1.6  Score=40.55  Aligned_cols=26  Identities=23%  Similarity=0.400  Sum_probs=23.5

Q ss_pred             hHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          64 VGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        64 ~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .||+++|.+|++ .+.+|+|+|+....
T Consensus         1 iaGL~aA~~L~~-~G~~v~vlEa~~r~   26 (450)
T PF01593_consen    1 IAGLAAAYYLAK-AGYDVTVLEASDRV   26 (450)
T ss_dssp             HHHHHHHHHHHH-TTTEEEEEESSSSS
T ss_pred             ChHHHHHHHHHh-CCCCEEEEEcCCCC
Confidence            489999999999 59999999999865

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional

Probab=80.97  E-value=2.1  Score=42.03  Aligned_cols=33  Identities=30%  Similarity=0.461  Sum_probs=29.1

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      -.++|||+|.+|+.+|..|.+ .+.+|.++|...
T Consensus        17 ~~v~viG~G~~G~~~A~~L~~-~G~~V~~~d~~~   49 (480)
T PRK01438         17 LRVVVAGLGVSGFAAADALLE-LGARVTVVDDGD   49 (480)
T ss_pred             CEEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCc
Confidence            368999999999999999988 599999999764

>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional

Probab=80.89  E-value=2  Score=42.78  Aligned_cols=34  Identities=29%  Similarity=0.333  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      +++|||+|..|+-+|..|++ -+.+|.|++.++..
T Consensus       353 ~VvVVGgG~~g~e~A~~L~~-~~~~Vtlv~~~~~l  386 (517)
T PRK15317        353 RVAVIGGGNSGVEAAIDLAG-IVKHVTVLEFAPEL  386 (517)
T ss_pred             EEEEECCCHHHHHHHHHHHh-cCCEEEEEEECccc
Confidence            79999999999999999998 48899999988654

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=80.70  E-value=1.9  Score=42.92  Aligned_cols=34  Identities=24%  Similarity=0.314  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHhcC---CCCeEEEeccCCc
Q psy4112          56 DFVIIGGGVGGSVVANRLSEN---PKWKVLLLESGED   89 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~---~~~~vl~lE~G~~   89 (284)
                      +.-|||||.|++++|..|.++   ++.+|.+||.-..
T Consensus         4 ~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~   40 (500)
T PF06100_consen    4 KAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDV   40 (500)
T ss_pred             eEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCC
Confidence            456999999999999999997   6779999997654

>PRK10262 thioredoxin reductase; Provisional

Probab=80.64  E-value=2.2  Score=39.41  Aligned_cols=33  Identities=27%  Similarity=0.304  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++|||+|..|+-+|..|++ .+.+|.++++++.
T Consensus       148 ~vvVvGgG~~g~e~A~~l~~-~~~~Vtlv~~~~~  180 (321)
T PRK10262        148 KVAVIGGGNTAVEEALYLSN-IASEVHLIHRRDG  180 (321)
T ss_pred             EEEEECCCHHHHHHHHHHHh-hCCEEEEEEECCc
Confidence            68999999999999999998 4889999998764

>PLN02507 glutathione reductase

Probab=80.60  E-value=2.1  Score=42.58  Aligned_cols=33  Identities=24%  Similarity=0.109  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++|||+|..|+-+|..|++ -+.+|.|+|+++.
T Consensus       205 ~vvVIGgG~ig~E~A~~l~~-~G~~Vtli~~~~~  237 (499)
T PLN02507        205 RAVVLGGGYIAVEFASIWRG-MGATVDLFFRKEL  237 (499)
T ss_pred             eEEEECCcHHHHHHHHHHHH-cCCeEEEEEecCC
Confidence            58999999999999999998 5899999998864

>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated

Probab=80.49  E-value=2.3  Score=38.98  Aligned_cols=32  Identities=22%  Similarity=0.368  Sum_probs=28.5

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      -+.|||+|..|...|..|++ .+.+|.+++.-.
T Consensus         5 kIaViGaG~mG~~iA~~la~-~G~~V~l~d~~~   36 (287)
T PRK08293          5 NVTVAGAGVLGSQIAFQTAF-HGFDVTIYDISD   36 (287)
T ss_pred             EEEEECCCHHHHHHHHHHHh-cCCeEEEEeCCH
Confidence            47899999999999999998 589999998754

>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B

Probab=80.31  E-value=1.9  Score=33.34  Aligned_cols=34  Identities=24%  Similarity=0.285  Sum_probs=28.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      +.-.++|||+|..|..-+..|.+ .+.+|.|+..-
T Consensus         6 ~~~~vlVvGgG~va~~k~~~Ll~-~gA~v~vis~~   39 (103)
T PF13241_consen    6 KGKRVLVVGGGPVAARKARLLLE-AGAKVTVISPE   39 (103)
T ss_dssp             TT-EEEEEEESHHHHHHHHHHCC-CTBEEEEEESS
T ss_pred             CCCEEEEECCCHHHHHHHHHHHh-CCCEEEEECCc
Confidence            34678999999999999999999 58899997644

>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit

Probab=80.17  E-value=2.2  Score=45.01  Aligned_cols=34  Identities=24%  Similarity=0.287  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|.+ .+.+|.|+|.++..
T Consensus       142 ~vvVVGgG~~GlE~A~~L~~-~G~~Vtvv~~~~~l  175 (785)
T TIGR02374       142 KAAVIGGGLLGLEAAVGLQN-LGMDVSVIHHAPGL  175 (785)
T ss_pred             eEEEECCCHHHHHHHHHHHh-cCCeEEEEccCCch
Confidence            58999999999999999998 58999999988753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	284
3fim_B	566	Crystal Structure Of Aryl-Alcohol-Oxidase From Pleu		6e-15
3q9t_A	577	Crystal Structure Analysis Of Formate Oxidase Lengt		6e-11
3t37_A	526	Crystal Structure Of Pyridoxine 4-Oxidase From Meso		4e-10
1cf3_A	583	Glucose Oxidase From Apergillus Niger Length = 583		2e-09
3nne_A	546	Crystal Structure Of Choline Oxidase S101a Mutant L		7e-09
2jbv_A	546	Crystal Structure Of Choline Oxidase Reveals Insigh		8e-09
3ljp_A	546	Crystal Structure Of Choline Oxidase V464a Mutant L		8e-09
1gpe_A	587	Glucose Oxidase From Penicillium Amagasakiense Leng		8e-08
1ju2_A	536	Crystal Structure Of The Hydroxynitrile Lyase From		4e-04
3gdn_A	521	Almond Hydroxynitrile Lyase In Complex With Benzald		5e-04

>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus Eryingii Length = 566

Iteration: 1
 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 111/246 (45%), Gaps = 46/246 (18%)
Query: 53  SEYDFXXXXXXXXXXXXANRLSENPKWKVLLLESG-EDENIY-TNIPLLAHF---NSLTH 107
           +++D+            A RL+E+P   VL+LE+G  DEN+     PLLA     NS+  
Sbjct: 1   ADFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSI-- 58
Query: 108 FNWGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAA-GN 166
           F+W Y            G        PRG+ LGGSS ++YM+  RG+ +D+D Y A  G+
Sbjct: 59  FDWNYTTTAQA------GYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGD 112
Query: 167 KGWGYDSVLKYFLKSE---------NNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQ 217
           +GW +D++ ++  K+E         N + EF+ A +H   G + ++   +   L ++   
Sbjct: 113 EGWNWDNIQQFVRKNEMVVPPADNHNTSGEFIPA-VHGTNGSVSISLPGFPTPLDDRV-- 169
Query: 218 AKEGPLKVTNIPYQNLLTEKFTQAACELGYRIYDYTGIEPATEGFSKLQSTLSKGQRYSA 277
                L  T    Q    E F       G+ +           G S   +++  GQR S+
Sbjct: 170 -----LATT----QEQSEEFFFNPDMGTGHPL-----------GISWSIASVGNGQRSSS 209
Query: 278 NRAYLK 283
           + AYL+
Sbjct: 210 STAYLR 215

>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase Length = 577

Iteration: 1
 Score = 64.7 bits (156), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 100/234 (42%), Gaps = 42/234 (17%)
Query: 53  SEYDFXXXXXXXXXXXXANRLSENPKWKVLLLESG--EDENI-YTNIPLLAHFNSLTHFN 109
           S +DF            A RL+ENP   VL++E+G    E+I     P  A     + ++
Sbjct: 5   SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYD 64
Query: 110 WGYK--LEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNK 167
           W YK  + + +++ +       + P  RGK LGGSS LNY  +  G+K  +D +E  G K
Sbjct: 65  WAYKTTMVRRDDYERI------EKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGK 118
Query: 168 GWGYDSVLKYFLKSENNTSEFLDADIHSRE-------GPLKVTNIPYQNLLTEKFTQAKE 220
            W +D ++ Y  KS        D  ++S E       GP+ ++   +  L+ E       
Sbjct: 119 EWTWDPLVPYLRKSATYHD---DPRLYSPELEKIGGGGPIPIS---HAELIDEM------ 166
Query: 221 GPLKVTNIPYQNLLTEKFTQAACELGYRIYDYTGIEPATEGFSKLQSTLSKGQR 274
                   P++  LT+ +      L   IYD        +G +    T+ +GQR
Sbjct: 167 -------APFRENLTKAWKSMGQPLIENIYDG-----EMDGLTHCCDTIYRGQR 208

>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium Loti Length = 526

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 40/121 (33%), Positives = 65/121 (53%), Gaps = 16/121 (13%)
Query: 70  ANRLSENPKWKVLLLESGE---DENIYTNIPLLAHFNSLT--HFNWGYKLEKNEEHPQCL 124
           A RLSE+P  +VLL+E+GE   D +I+      A + +L    ++W Y+ E         
Sbjct: 33  AARLSEDPDSRVLLIEAGEEPTDPDIWNP----AAWPALQGRSYDWDYRTEAQA------ 82
Query: 125 GMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTY-EAAGNKGWGYDSVLKYFLKSEN 183
           G         RG+ +GGSS L+ M Y RG+  D+  + +A+G++ WG+D +L  F   E+
Sbjct: 83  GTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIED 142
Query: 184 N 184
           +
Sbjct: 143 H 143

>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger Length = 583

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 62/114 (54%), Gaps = 5/114 (4%)
Query: 70  ANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYND 129
           A RL+ENP   VL++ESG  E+     P++   N+     +G  ++   E  + L   N 
Sbjct: 35  AARLTENPNISVLVIESGSYES--DRGPIIEDLNAYGDI-FGSSVDHAYETVE-LATNNQ 90
Query: 130 QCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAA-GNKGWGYDSVLKYFLKSE 182
                 G GLGGS+++N   +TR +K   D++E   GN+GW +D+V  Y L++E
Sbjct: 91  TALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAE 144

>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant Length = 546

Iteration: 1
 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 10/159 (6%)
Query: 54  EYDFXXXXXXXXXXXXANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSL--THFNWG 111
           E+D+            A RLSE+P   V L+E+G D+     +  L  +  L  + ++W 
Sbjct: 13  EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 112 YKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAA-GNKGWG 170
           Y +E     PQ  G  N      R K +GG S  N  I     ++D D +EA  G  GW 
Sbjct: 73  YPIE-----PQENG--NSFMRHARAKVMGGCSSHNACIAFWAPREDLDEWEAKYGATGWN 125
Query: 171 YDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQN 209
            ++    + + E N     DA  H   GP+ + N+P ++
Sbjct: 126 AEAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKD 164

>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights Into The Catalytic Mechanism Length = 546

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 10/159 (6%)
Query: 54  EYDFXXXXXXXXXXXXANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSL--THFNWG 111
           E+D+            A RLSE+P   V L+E+G D+     +  L  +  L  + ++W 
Sbjct: 13  EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 112 YKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAA-GNKGWG 170
           Y +E     PQ  G  N      R K +GG S  N  I     ++D D +EA  G  GW 
Sbjct: 73  YPIE-----PQENG--NSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWN 125
Query: 171 YDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQN 209
            ++    + + E N     DA  H   GP+ + N+P ++
Sbjct: 126 AEAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKD 164

>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant Length = 546

Iteration: 1
 Score = 57.4 bits (137), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 10/159 (6%)
Query: 54  EYDFXXXXXXXXXXXXANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSL--THFNWG 111
           E+D+            A RLSE+P   V L+E+G D+     +  L  +  L  + ++W 
Sbjct: 13  EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 112 YKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAA-GNKGWG 170
           Y +E     PQ  G  N      R K +GG S  N  I     ++D D +EA  G  GW 
Sbjct: 73  YPIE-----PQENG--NSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWN 125
Query: 171 YDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQN 209
            ++    + + E N     DA  H   GP+ + N+P ++
Sbjct: 126 AEAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKD 164

>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense Length = 587

Iteration: 1
 Score = 54.3 bits (129), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 31/165 (18%)
Query: 32  YLRQQGLEFRENIFLGNKPILSE-YDFXXXXXXXXXXXXANRLSENPKWKVLLLESGEDE 90
           YL  Q ++ + ++      +  + YD+            A +L+ENPK KVL++E G  E
Sbjct: 1   YLPAQQIDVQSSLLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE 60
Query: 91  NIYTNIPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYNDQ----CP--------CPRGKG 138
           +                 N G  +E    + Q  G   DQ     P           GKG
Sbjct: 61  S-----------------NDGAIIEDPNAYGQIFGTTVDQNYLTVPLINNRTNNIKAGKG 103
Query: 139 LGGSSILNYMIYTRGNKKDYDTYEAA-GNKGWGYDSVLKYFLKSE 182
           LGGS+++N   +TR +K   D++E   G +GW +D++ +Y  K+E
Sbjct: 104 LGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAE 148

>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond Length = 536

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 64/161 (39%), Gaps = 30/161 (18%)
Query: 54  EYDFXXXXXXXXXXXXANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYK 113
            YD+            A  LSE  K+KVL+LE G     Y N+        LT   + Y 
Sbjct: 26  SYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNV--------LTADGFVYN 75
Query: 114 LEKNEE--HPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGY 171
           L++ ++   P    +  D     RG+ LGG+SI+N  +Y R N   Y    +A    W  
Sbjct: 76  LQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIY----SASGVDWDM 131
Query: 172 DSVLKYFLKSENNT--------------SEFLDADIHSREG 198
           D V + +   E+                + FL+A +H   G
Sbjct: 132 DLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHG 172

>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde Length = 521

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 64/161 (39%), Gaps = 30/161 (18%)
Query: 54  EYDFXXXXXXXXXXXXANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYK 113
            YD+            A  LSE  K+KVL+LE G     Y N+        LT   + Y 
Sbjct: 26  SYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNV--------LTADGFVYN 75
Query: 114 LEKNEE--HPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGY 171
           L++ ++   P    +  D     RG+ LGG+SI+N  +Y R N   Y    +A    W  
Sbjct: 76  LQQEDDGKTPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIY----SASGVDWDM 131
Query: 172 DSVLKYFLKSENNT--------------SEFLDADIHSREG 198
           D V + +   E+                + FL+A +H   G
Sbjct: 132 DLVNQTYEWVEDTIVYKPNSQSWQSVTKTAFLEAGVHPNHG 172

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	284
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	7e-77
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	2e-76
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	2e-74
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	6e-72
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	2e-67
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	4e-67
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	5e-63
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	2e-53
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	6e-14
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	1e-10
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	2e-08
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	3e-06
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	3e-05
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	3e-05
3dme_A	369	Conserved exported protein; structural genomics, P	1e-04
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	2e-04
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	3e-04
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	3e-04
3atr_A	453	Conserved archaeal protein; saturating double bond	3e-04
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	6e-04
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	6e-04
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	7e-04
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	7e-04

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} Length = 566

 Score =  242 bits (621), Expect = 7e-77
 Identities = 65/238 (27%), Positives = 109/238 (45%), Gaps = 30/238 (12%)

Query: 53  SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG--EDENIYTNIPLLAHFNSL-THFN 109
           +++D+V++G G  G+VVA RL+E+P   VL+LE+G  ++  +    PLLA      + F+
Sbjct: 1   ADFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFD 60

Query: 110 WGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEA-AGNKG 168
           W Y         Q  G        PRG+ LGGSS ++YM+  RG+ +D+D Y A  G++G
Sbjct: 61  WNYTTT-----AQ-AGYNGRSIAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEG 114

Query: 169 WGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNI 228
           W +D++ ++  K+E        AD H+  G                      G + ++  
Sbjct: 115 WNWDNIQQFVRKNEMVV---PPADNHNTSGE---FIPAV---------HGTNGSVSISLP 159

Query: 229 PYQNLLTEKFTQAACELGYRI---YDYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
            +   L ++      E         D         G S   +++  GQR S++ AYL+
Sbjct: 160 GFPTPLDDRVLATTQEQSEEFFFNPDMGT--GHPLGISWSIASVGNGQRSSSSTAYLR 215

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 Length = 587

 Score =  242 bits (620), Expect = 2e-76
 Identities = 62/268 (23%), Positives = 103/268 (38%), Gaps = 46/268 (17%)

Query: 32  YLRQQGLEFRENIFLGNKPILS-EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG--- 87
           YL  Q ++ + ++      +    YD++I GGG+ G  VA +L+ENPK KVL++E G   
Sbjct: 1   YLPAQQIDVQSSLLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYE 60

Query: 88  EDENIYTNIPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNY 147
            ++      P        T  +  Y        P    + N       GKGLGGS+++N 
Sbjct: 61  SNDGAIIEDPNAYGQIFGTTVDQNYLTV-----PL---INNRTNNIKAGKGLGGSTLING 112

Query: 148 MIYTRGNKKDYDTYEAA-GNKGWGYDSVLKYFLKSENNT---------SEFLDADIHSRE 197
             +TR +K   D++E   G +GW +D++ +Y  K+E                +A  H   
Sbjct: 113 DSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTN 172

Query: 198 GPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGY-RIYDYTGIE 256
           G ++          +                     + +        LG     D+    
Sbjct: 173 GTVQSGARDNGQPWSP--------------------IMKALMNTVSALGVPVQQDFLCGH 212

Query: 257 PATEGFSKLQSTLSK-GQRYSANRAYLK 283
           P   G S + + L +   R  A RA+L 
Sbjct: 213 P--RGVSMIMNNLDENQVRVDAARAWLL 238

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* Length = 583

 Score =  237 bits (606), Expect = 2e-74
 Identities = 56/245 (22%), Positives = 91/245 (37%), Gaps = 44/245 (17%)

Query: 54  EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG---EDENIYTNIPLLAHFNSLTHFNW 110
             D++I GGG+ G   A RL+ENP   VL++ESG    D                +  + 
Sbjct: 19  TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDH 78

Query: 111 GYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAA-GNKGW 169
            Y+              N       G GLGGS+++N   +TR +K   D++E   GN+GW
Sbjct: 79  AYETV-----EL--ATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGW 131

Query: 170 GYDSVLKYFLKSENNTS---------EFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKE 220
            +D+V  Y L++E   +          + +A  H   G +        +           
Sbjct: 132 NWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGD----------- 180

Query: 221 GPLKVTNIPYQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLSK-GQRYSAN 278
                      + + +    A  + G     D+   +P   G S   +TL +   R  A 
Sbjct: 181 ---------DYSPIVKALMSAVEDRGVPTKKDFGCGDP--HGVSMFPNTLHEDQVRSDAA 229

Query: 279 RAYLK 283
           R +L 
Sbjct: 230 REWLL 234

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} Length = 577

 Score =  230 bits (589), Expect = 6e-72
 Identities = 61/241 (25%), Positives = 98/241 (40%), Gaps = 38/241 (15%)

Query: 53  SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG---EDENIYTNIPLLAHFNSLTHFN 109
           S +DFVI+GGG  G+ VA RL+ENP   VL++E+G    ++      P  A     + ++
Sbjct: 5   SHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYD 64

Query: 110 WGYKLEKNEEHPQCLGMYNDQCPCP--RGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNK 167
           W YK               ++   P  RGK LGGSS LNY  +  G+K  +D +E  G K
Sbjct: 65  WAYKTT-----MV-RRDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGK 118

Query: 168 GWGYDSVLKYFLKSENNTSE----FLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPL 223
            W +D ++ Y  KS     +      + +     GP+ +++    +              
Sbjct: 119 EWTWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPISHAELID-------------- 164

Query: 224 KVTNIPYQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYL 282
                       E  T+A   +G   I +    E   +G +    T+ +GQR  +     
Sbjct: 165 ------EMAPFRENLTKAWKSMGQPLIENIYDGEM--DGLTHCCDTIYRGQRSGSFLFVK 216

Query: 283 K 283
            
Sbjct: 217 N 217

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* Length = 546

 Score =  217 bits (556), Expect = 2e-67
 Identities = 60/236 (25%), Positives = 96/236 (40%), Gaps = 38/236 (16%)

Query: 54  EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG-EDENIYTNIP--LLAHFNSLTHFNW 110
           E+D++++GGG  G+ VA RLSE+P   V L+E+G +D  +   +           + ++W
Sbjct: 13  EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLE-SGYDW 71

Query: 111 GYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEA-AGNKGW 169
            Y +E     PQ  G  N      R K +GG S  N  I     ++D D +EA  G  GW
Sbjct: 72  DYPIE-----PQENG--NSFMRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGW 124

Query: 170 GYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIP 229
             ++    + + E N     DA  H   GP+ + N+P ++            P       
Sbjct: 125 NAEAAWPLYKRLETNEDAGPDAPHHGDSGPVHLMNVPPKD------------P------- 165

Query: 230 YQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTL-SKGQRYSANRAYLK 283
                      A  + G  R    TG      G +  Q    + G R S++ +Y+ 
Sbjct: 166 ----TGVALLDACEQAGIPRAKFNTG-TTVVNGANFFQINRRADGTRSSSSVSYIH 216

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} Length = 526

 Score =  216 bits (553), Expect = 4e-67
 Identities = 63/234 (26%), Positives = 98/234 (41%), Gaps = 37/234 (15%)

Query: 54  EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG-EDENIYTNIPL-LAHFNSLTHFNWG 111
             D VI+GGG  GS++A RLSE+P  +VLL+E+G E  +     P           ++W 
Sbjct: 17  NCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQG-RSYDWD 75

Query: 112 YKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDT-YEAAGNKGWG 170
           Y+ E      Q  G         RG+ +GGSS L+ M Y RG+  D+    +A+G++ WG
Sbjct: 76  YRTE-----AQ-AGTAGRAHHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWG 129

Query: 171 YDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPY 230
           +D +L  F   E++        IH + GPL +                            
Sbjct: 130 WDELLPVFQAIEDH--PLGGDGIHGKGGPLPIHL----------------------PADE 165

Query: 231 QNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
            + L   F +A   LG  R+  +        G +     +  G+R +A  A+L 
Sbjct: 166 VSPLARAFIEAGASLGLPRLEGHNS--GEMIGVTPNSLNIRDGRRVTAADAWLT 217

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* Length = 536

 Score =  206 bits (526), Expect = 5e-63
 Identities = 50/234 (21%), Positives = 74/234 (31%), Gaps = 53/234 (22%)

Query: 50  PILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFN 109
            +   YD+VI+GGG  G  +A  LSE   +KVL+LE G     Y N+     F       
Sbjct: 22  ELEGSYDYVIVGGGTSGCPLAATLSEK--YKVLVLERGSLPTAYPNVLTADGFVYNLQQE 79

Query: 110 WGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGW 169
              K        +   +  D     RG+ LGG+SI+N  +Y R N   Y     A    W
Sbjct: 80  DDGKTP-----VE-RFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYS----ASGVDW 129

Query: 170 GYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIP 229
             D V + +   E+                                        K  +  
Sbjct: 130 DMDLVNQTYEWVEDT------------------------------------IVYKPNSQS 153

Query: 230 YQNLLTEKFTQAACELGYRIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
           +Q++    F +A        + ++      EG     ST        A    L 
Sbjct: 154 WQSVTKTAFLEAGVHPN---HGFSL--DHEEGTRITGSTFDNKGTRHAADELLN 202

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* Length = 546

 Score =  181 bits (461), Expect = 2e-53
 Identities = 43/237 (18%), Positives = 73/237 (30%), Gaps = 47/237 (19%)

Query: 54  EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG-EDENIYTNIP----LLAHFNSLTHF 108
            YD++I+G G GG + A+RLSE  K KVLLLE G                 +   +    
Sbjct: 7   PYDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDI 65

Query: 109 NWGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKG 168
              ++    + +P     +        G  +GG + +N  +Y   N  D+       + G
Sbjct: 66  PGLFESLFTDSNP---FWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFS-----SSVG 117

Query: 169 W--GYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVT 226
           W   + +   Y  K  +        D  S +G   +                        
Sbjct: 118 WPSSWTNHAPYTSKLSSR---LPSTDHPSTDGQRYLEQSF-------------------- 154

Query: 227 NIPYQNLLTEKFTQAACELGYRIYDYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK 283
                N++++   +        I D          F         G+R      YL+
Sbjct: 155 -----NVVSQ-LLKGQGYNQATINDNPN--YKDHVFGYSAFDFLNGKRAGPVATYLQ 203

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* Length = 504

 Score = 70.5 bits (172), Expect = 6e-14
 Identities = 29/148 (19%), Positives = 52/148 (35%), Gaps = 22/148 (14%)

Query: 53  SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG-----EDENIYTNIPLLAHFN---- 103
                V+IG G G +V A RL E    + L+LE G        +      +L        
Sbjct: 4   GYVPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSW 62

Query: 104 -------SLTHFNWGYKLEKNEEHPQCLGMY--NDQCPCPRGKGLGGSSILNYMIYTRGN 154
                   L  F W   + +N +    +      DQ     G+G+GG S++N  +     
Sbjct: 63  FKNRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPK 122

Query: 155 KKDYDTYEAAGNKGWGYDSVLKYFLKSE 182
           +  ++       +    +   +YF ++ 
Sbjct: 123 RSYFE---EILPRVDSSEMYDRYFPRAN 147

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* Length = 507

 Score = 60.9 bits (147), Expect = 1e-10
 Identities = 24/149 (16%), Positives = 48/149 (32%), Gaps = 21/149 (14%)

Query: 53  SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED-ENIYTNIPLLAHF-NSLTHFNW 110
                ++IG G GG+V A RL++       ++E G   +   ++  +     N      W
Sbjct: 10  DRVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMW 68

Query: 111 GYKLEK-NEEHPQCLGMYNDQCPCP--------------RGKGLGGSSILNYMIYTRGNK 155
                     +    G+                      +G+G+GG S++N  +     +
Sbjct: 69  LADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKR 128

Query: 156 KDYDTYEAAGNKGWGYDSVLKYFLKSENN 184
                +E         +   KYF ++   
Sbjct: 129 NY---FEEILPSVDSNEMYNKYFPRANTG 154

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... Length = 623

 Score = 53.7 bits (128), Expect = 2e-08
 Identities = 25/155 (16%), Positives = 44/155 (28%), Gaps = 13/155 (8%)

Query: 54  EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYK 113
           +YD VI+G G  G   A  L      KV + + GE +   + + + AH  +   +     
Sbjct: 46  KYDVVIVGSGPIGCTYARELVGAGY-KVAMFDIGEID---SGLKIGAHKKNTVEYQKNID 101

Query: 114 LEKNEEHPQCLGM------YNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAA--- 164
              N    Q + +             P         + N     +   ++          
Sbjct: 102 KFVNVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVV 161

Query: 165 GNKGWGYDSVLKYFLKSENNTSEFLDADIHSREGP 199
           G     +      F + +       DAD    E  
Sbjct: 162 GGMSTAWTCATPRFDREQRPLLVKDDADADDAEWD 196

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* Length = 448

 Score = 47.1 bits (112), Expect = 3e-06
 Identities = 11/53 (20%), Positives = 22/53 (41%)

Query: 36 QGLEFRENIFLGNKPILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
                 +  +     +  +D+V++G GV G   A  L       VL++++G 
Sbjct: 5  HHHHHHSSGLVPRGSHMPRFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAGH 57

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} Length = 399

 Score = 44.0 bits (103), Expect = 3e-05
 Identities = 13/49 (26%), Positives = 25/49 (51%), Gaps = 4/49 (8%)

Query: 49 KPILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYT 94
          +P+ + +D  ++G G  G  +A R++     +VL+LE        N Y+
Sbjct: 2  QPMTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLER-RPHIGGNAYS 49

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} Length = 405

 Score = 43.9 bits (102), Expect = 3e-05
 Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 53 SEYDFVIIGGGVGGSVVANRLSE-NPKWKVLLLESGE 88
            +D V+IG G  G+  A  L +  P   +LL+E G 
Sbjct: 35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGG 71

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} Length = 369

 Score = 42.1 bits (100), Expect = 1e-04
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89
          + D ++IG GV G  +A  L+     +VL+ E+ E 
Sbjct: 4  DIDCIVIGAGVVGLAIARALAA-GGHEVLVAEAAEG 38

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 53  SEYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGE 88
           +  D +I+G G  G   A  +++N P  KV ++ES  
Sbjct: 64  AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV 100

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} Length = 475

 Score = 41.1 bits (95), Expect = 3e-04
 Identities = 23/112 (20%), Positives = 41/112 (36%), Gaps = 11/112 (9%)

Query: 41  RENIFLGNKPILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLES----GEDENIYTNI 96
           REN++   +     YD +I+G G+   +++  LS   K  +L+L+     G +       
Sbjct: 11  RENLYFQGE----HYDVIILGTGLKECILSGLLSHYGKK-ILVLDRNPYYGGETASLNLT 65

Query: 97  PLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYM 148
            L   F    +    Y   +N      L            K L  + + NY+
Sbjct: 66  NLYNTFKPKENIPSKYG--ENRHWNVDLIPKFILVGGNLVKILKKTRVTNYL 115

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* Length = 453

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89
          +YD +IIGGG  GS  A +LS     K+LL++S   
Sbjct: 6  KYDVLIIGGGFAGSSAAYQLSRR-GLKILLVDSKPW 40

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* Length = 397

 Score = 40.1 bits (93), Expect = 6e-04
 Identities = 12/33 (36%), Positives = 23/33 (69%), Gaps = 1/33 (3%)

Query: 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLE 85
            +D++I+G G  GSV+A RL+ +   +VL+++
Sbjct: 28 KGFDYLIVGAGFAGSVLAERLASS-GQRVLIVD 59

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 40.2 bits (93), Expect = 6e-04
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
           D ++IG G  G   A RL++      ++++S E
Sbjct: 11 VDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNE 44

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 Length = 284

 Score = 39.3 bits (91), Expect = 7e-04
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
          +E D V++G G  G   A  +S+NP  +V ++E   
Sbjct: 38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV 73

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} Length = 512

 Score = 39.9 bits (93), Expect = 7e-04
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)

Query: 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLE 85
            +D ++IGGG GGS +A+ ++     +VLLLE
Sbjct: 6  EVFDLIVIGGGPGGSTLASFVAMR-GHRVLLLE 37

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	284
3fim_B	566	ARYL-alcohol oxidase; AAO, lignin degradation, oxi	100.0
3qvp_A	583	Glucose oxidase; oxidoreductase; HET: NAG BMA MAN	100.0
3t37_A	526	Probable dehydrogenase; BET alpha beta fold, ADP b	100.0
3q9t_A	577	Choline dehydrogenase and related flavoproteins; g	100.0
1gpe_A	587	Protein (glucose oxidase); oxidoreductase(flavopro	100.0
2jbv_A	546	Choline oxidase; alcohol oxidation, flavoenyzme ox	100.0
1coy_A	507	Cholesterol oxidase; oxidoreductase(oxygen recepto	99.95
1n4w_A	504	CHOD, cholesterol oxidase; flavoenzyme, steroid me	99.94
1ju2_A	536	HydroxynitrIle lyase; flavin, GMC oxidoreductase,	99.91
1kdg_A	546	CDH, cellobiose dehydrogenase; GMC oxidoreductase,	99.89
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.42
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	98.28
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	98.12
4fk1_A	304	Putative thioredoxin reductase; structural genomic	97.99
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	97.98
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	97.98
3dme_A	369	Conserved exported protein; structural genomics, P	97.95
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	97.94
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	97.92
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	97.89
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	97.85
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	97.85
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	97.85
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	97.82
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	97.81
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	97.81
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	97.79
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	97.78
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	97.77
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.75
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	97.75
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	97.75
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	97.74
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	97.74
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	97.73
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.71
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	97.7
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	97.69
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	97.65
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	97.65
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	97.65
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	97.63
3atr_A	453	Conserved archaeal protein; saturating double bond	97.63
2cul_A	232	Glucose-inhibited division protein A-related PROT	97.62
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	97.6
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	97.59
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	97.58
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	97.58
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	97.58
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	97.57
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	97.57
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	97.57
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	97.57
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	97.56
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	97.56
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	97.56
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	97.56
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	97.55
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	97.55
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	97.54
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	97.54
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	97.54
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	97.53
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	97.53
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	97.52
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	97.52
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	97.51
2rgh_A	571	Alpha-glycerophosphate oxidase; flavoprotein oxida	97.51
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	97.51
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	97.5
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	97.49
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	97.49
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	97.48
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	97.48
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	97.48
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	97.47
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	97.46
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	97.46
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	97.46
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	97.46
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	97.45
2ywl_A	180	Thioredoxin reductase related protein; uncharacter	97.45
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	97.45
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	97.44
3fmw_A	570	Oxygenase; mithramycin, baeyer-villiger, flavin bi	97.44
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	97.44
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	97.43
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	97.43
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	97.43
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	97.43
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	97.43
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	97.42
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	97.42
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	97.42
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	97.42
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	97.42
4dna_A	463	Probable glutathione reductase; structural genomic	97.41
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	97.41
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	97.4
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	97.4
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	97.39
3ces_A	651	MNMG, tRNA uridine 5-carboxymethylaminomethyl modi	97.39
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	97.39
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	97.39
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	97.37
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	97.37
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	97.36
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	97.36
2aqj_A	538	Tryptophan halogenase, pRNA; flavin-dependent halo	97.34
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	97.34
3gyx_A	662	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.33
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	97.33
1pj5_A	830	N,N-dimethylglycine oxidase; channelling, FAD bind	97.33
2dkh_A	639	3-hydroxybenzoate hydroxylase; flavoprotein, monoo	97.33
2zxi_A	637	TRNA uridine 5-carboxymethylaminomethyl modificat	97.32
1jnr_A	643	Adenylylsulfate reductase; oxidoreductase; HET: FA	97.32
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	97.32
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	97.32
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	97.31
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	97.3
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	97.3
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	97.3
4b1b_A	542	TRXR, thioredoxin reductase; oxidoreductase, FAD,	97.29
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	97.29
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	97.28
2bry_A	497	NEDD9 interacting protein with calponin homology a	97.28
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	97.28
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	97.28
4hb9_A	412	Similarities with probable monooxygenase; flavin,	97.26
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	97.26
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	97.26
1kf6_A	602	Fumarate reductase flavoprotein; respiration, fuma	97.26
2weu_A	511	Tryptophan 5-halogenase; regioselectivity, antifun	97.25
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	97.25
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	97.24
2e5v_A	472	L-aspartate oxidase; archaea, oxidoreductase; HET:	97.24
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	97.24
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	97.24
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	97.23
3cp8_A	641	TRNA uridine 5-carboxymethylaminomethyl modificati	97.23
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	97.22
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	97.22
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	97.22
1ojt_A	482	Surface protein; redox-active center, glycolysis,	97.21
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	97.2
2e4g_A	550	Tryptophan halogenase; flavin-binding, rebeccamyci	97.2
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	97.19
3r9u_A	315	Thioredoxin reductase; structural genomics, center	97.19
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	97.18
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	97.17
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	97.17
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	97.16
2pyx_A	526	Tryptophan halogenase; structural genomics, JOI fo	97.16
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	97.15
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	97.14
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	97.13
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	97.13
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	97.1
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	97.09
1pn0_A	665	Phenol 2-monooxygenase; two dimers, TLS refinement	97.08
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	97.06
1fec_A	490	Trypanothione reductase; redox-active center, oxid	97.06
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	97.05
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	97.04
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	97.04
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	97.02
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	97.02
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	96.99
3g5s_A	443	Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy	96.97
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	96.95
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	96.91
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	96.91
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	96.9
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	96.84
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	96.81
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	96.78
1hyu_A	521	AHPF, alkyl hydroperoxide reductase subunit F; thi	96.76
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	96.75
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	96.75
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	96.73
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	96.72
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	96.72
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	96.68
1m6i_A	493	Programmed cell death protein 8; apoptosis, AIF, o	96.67
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	96.67
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	96.64
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	96.62
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	96.61
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	96.61
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	96.57
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	96.56
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	96.56
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	96.54
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	96.52
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	96.48
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	96.48
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	96.45
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	96.35
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	96.34
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	96.3
3sx6_A	437	Sulfide-quinone reductase, putative; sulfide:quino	96.28
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	96.09
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	96.07
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	95.98
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	95.96
3vrd_B	401	FCCB subunit, flavocytochrome C flavin subunit; su	95.95
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	95.91
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	95.9
4b63_A	501	L-ornithine N5 monooxygenase; oxidoreductase, side	95.66
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	95.64
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	95.59
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	95.5
3hyw_A	430	Sulfide-quinone reductase; monotopic membrane prot	95.21
1nhp_A	447	NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA	92.05
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	91.99
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	91.57
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	91.34
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	90.98
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	90.68
1id1_A	153	Putative potassium channel protein; RCK domain, E.	90.58
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	90.43
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	90.12
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	90.05
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	89.83
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	89.73
2v3a_A	384	Rubredoxin reductase; alkane degradation, NADH oxi	89.43
1xhc_A	367	NADH oxidase /nitrite reductase; southe collaborat	89.4
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	89.37
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	88.8
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	88.16
2gqw_A	408	Ferredoxin reductase; flavoprotein, oxidoreductase	87.97
3c85_A	183	Putative glutathione-regulated potassium-efflux S	87.76
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	87.64
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	87.48
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	87.1
2bc0_A	490	NADH oxidase; flavoprotein, pyridine nucleotide di	86.93
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	86.9
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	86.62
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	86.58
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	86.49
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	86.29
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	86.15
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	86.03
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	86.01
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	85.77
3ef6_A	410	Toluene 1,2-dioxygenase system ferredoxin--NAD(+)	85.23
1q1r_A	431	Putidaredoxin reductase; glutathione reductase fol	85.21
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	85.21
3kd9_A	449	Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o	85.14
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	85.09
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	85.08
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	85.01
1ojt_A	482	Surface protein; redox-active center, glycolysis,	84.99
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	84.84
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	84.84
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	84.83
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	84.81
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	84.58
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	84.4
2cdu_A	452	NADPH oxidase; flavoenzyme, oxidoreductase; HET: F	84.39
3i83_A	320	2-dehydropantoate 2-reductase; structural genomics	84.37
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	84.19
4eqs_A	437	Coenzyme A disulfide reductase; oxidoreductase; HE	83.94
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	83.78
4g65_A	461	TRK system potassium uptake protein TRKA; structur	83.68
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	83.48
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	83.38
3hn2_A	312	2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str	83.32
1ks9_A	291	KPA reductase;, 2-dehydropantoate 2-reductase; PAN	82.93
3ado_A	319	Lambda-crystallin; L-gulonate 3-dehydrogenase, str	82.87
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	82.75
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	82.61
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	82.51
3ntd_A	565	FAD-dependent pyridine nucleotide-disulphide oxido	82.38
3fg2_P	404	Putative rubredoxin reductase; ferredoxin reductas	82.08
3s5w_A	463	L-ornithine 5-monooxygenase; class B flavin depend	82.02
3lxd_A	415	FAD-dependent pyridine nucleotide-disulphide oxido	82.01
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	81.77
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	81.69
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	81.49
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	81.06
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	80.93
2x8g_A	598	Thioredoxin glutathione reductase; redox-active ce	80.91
3ghy_A	335	Ketopantoate reductase protein; oxidoreductase, NA	80.8
1f0y_A	302	HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive	80.56
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	80.51

>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}

Probab=100.00  E-value=5.6e-43  Score=347.66  Aligned_cols=199  Identities=31%  Similarity=0.589  Sum_probs=179.9

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc--cccccccccccccc-CCcccccccccCCCCCccccCCCCCC
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE--NIYTNIPLLAHFNS-LTHFNWGYKLEKNEEHPQCLGMYNDQ  130 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~--~~~~~~p~~~~~~~-~~~~~w~~~~~p~~~~~~~~~~~~~~  130 (284)
                      +|||||||+|++||++|.||+|+++.+|||||+|+..  ....++|.....+. .+.++|.|.++||.      +++++.
T Consensus         2 ~yD~IIVG~G~aG~v~A~rLse~~~~~VlllEaG~~~~~~~~~~~p~~~~~~~~~~~~~w~~~t~pq~------~~~~r~   75 (566)
T 3fim_B            2 DFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFDWNYTTTAQA------GYNGRS   75 (566)
T ss_dssp             CEEEEESCCSTTHHHHHHHHTTSTTCCEEEECSSBCCTTCGGGTSGGGSGGGSSSSTTBCCCBCCCCG------GGTTCC
T ss_pred             CcCEEEECCcHHHHHHHHHHHhCcCCcEEEEecCCcccCCCceeCcchHHHhcCCCccccccccccCC------CCCCce
Confidence            5999999999999999999999889999999999876  35567787665444 47899999999998      788999


Q ss_pred             cccCcccccCCccccccccccCCChhhHHHHHhc-CCCCCChhhHHHHHHHHhhccCCC--------CCCCCCCcccCce
Q psy4112         131 CPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAA-GNKGWGYDSVLKYFLKSENNTSEF--------LDADIHSREGPLK  201 (284)
Q Consensus       131 ~~~~rGk~lGGsS~iN~~~~~R~~~~D~d~W~~~-G~~gW~~~~l~pyf~k~E~~~~~~--------~~~~~hG~~Gpl~  201 (284)
                      +.++|||+|||||+||+|+|+|+++.|||.|+++ |++||+|++|+|||+|+|++..+.        .++.+||.+||++
T Consensus        76 ~~~~rGk~lGGsS~iN~m~~~Rg~~~d~d~W~~~~G~~gWs~~~~~pyf~k~E~~~~~~~~~~~~~~~~~~~hG~~Gp~~  155 (566)
T 3fim_B           76 IAYPRGRMLGGSSSVHYMVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNGSVS  155 (566)
T ss_dssp             CBCCCBCBTTGGGGTSCCBCCCCCHHHHHHHHHHHTCTTSSHHHHHHHHHHHEEECCCTTCCCCTTTSCGGGSCBSSSEE
T ss_pred             EeccCCcEEcCcccccceEEecCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhccCCccccccccccCCccccCCCCCee
Confidence            9999999999999999999999999999999999 999999999999999999998652        2457899999999


Q ss_pred             eecCCcchhhhhhhhcccCCCCcccCCcccchHHHHHHHHHHHc--CCCcc-CCCCCCCCCcccccccccccCCcccchh
Q psy4112         202 VTNIPYQNLLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACEL--GYRIY-DYTGIEPATEGFSKLQSTLSKGQRYSAN  278 (284)
Q Consensus       202 v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~A~~~l--G~~~~-D~n~~~~~~~G~~~~~~ti~~G~R~sa~  278 (284)
                      |+.+.+                       ..++...|++|++++  |++.. |+|++..  .|++.++.++++|+|+|++
T Consensus       156 v~~~~~-----------------------~~~~~~~~~~a~~~~~~G~~~~~d~n~~~~--~G~~~~~~~~~~g~R~sa~  210 (566)
T 3fim_B          156 ISLPGF-----------------------PTPLDDRVLATTQEQSEEFFFNPDMGTGHP--LGISWSIASVGNGQRSSSS  210 (566)
T ss_dssp             EBSCSS-----------------------CCTHHHHHHHHHHHTHHHHCBCSCGGGSCC--CEEEECCBSEETTEECCHH
T ss_pred             eecCCC-----------------------CCHHHHHHHHHHHHHhcCCCccCCCCCCCc--ceEEeeeeecCCCEEcCHH
Confidence            998766                       678999999999999  99986 8998888  8999999999999999999


Q ss_pred             hhccC
Q psy4112         279 RAYLK  283 (284)
Q Consensus       279 ~ayL~  283 (284)
                      .+||.
T Consensus       211 ~ayL~  215 (566)
T 3fim_B          211 TAYLR  215 (566)
T ss_dssp             HHTHH
T ss_pred             HHHhh
Confidence            99985

>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*

Probab=100.00  E-value=5.7e-42  Score=341.37  Aligned_cols=204  Identities=26%  Similarity=0.366  Sum_probs=175.0

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc---ccccccccccccccCCcccccccccCCCCCccccCCCC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYN  128 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~---~~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~  128 (284)
                      .++|||||||+|.|||++|.||+|+++.+|||||||++.   .+...+|.....+..+.++|.|.++||.       .++
T Consensus        17 ~~~yDyIIVGgG~AG~vlA~RLse~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~~~w~~~t~~q~-------~~~   89 (583)
T 3qvp_A           17 GRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVELA-------TNN   89 (583)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEECSSCCCTTSCHHHHBGGGTTTTTTSTTBCCEECCCCT-------TTS
T ss_pred             CCCccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCCCCCCCcceechhhHHhhcCCcccCCccccccC-------CCC
Confidence            457999999999999999999999889999999999943   2334455554444567899999999986       467


Q ss_pred             CCcccCcccccCCccccccccccCCChhhHHHHHhcCCC-CCChhhHHHHHHHHhhccCCC---------CCCCCCCccc
Q psy4112         129 DQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNK-GWGYDSVLKYFLKSENNTSEF---------LDADIHSREG  198 (284)
Q Consensus       129 ~~~~~~rGk~lGGsS~iN~~~~~R~~~~D~d~W~~~G~~-gW~~~~l~pyf~k~E~~~~~~---------~~~~~hG~~G  198 (284)
                      +.+.|+|||+|||||+||+|+|+|+++.|||.|+++|++ +|+|++|+|||+|+|++..+.         .+..+||.+|
T Consensus        90 r~~~~~rGk~LGGsS~iN~m~y~Rg~~~Dyd~W~~~g~~~gW~~~~~lpyf~k~E~~~~~~~~~~~~~~~~~~~~hG~~G  169 (583)
T 3qvp_A           90 QTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNG  169 (583)
T ss_dssp             CCCEECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTSCCTTCSHHHHHHHHHHHEEECCCCHHHHHHTCCCCGGGSCSSS
T ss_pred             CeeeccCceecCCcCcccceEEEeCCHHHHHHHHHhCCCCCCChhHHHHHHHHHHhccCCcchhhcccccCCccccCCCC
Confidence            889999999999999999999999999999999999888 999999999999999997542         3567899999


Q ss_pred             CceeecCCcchhhhhhhhcccCCCCcccCCcccchHHHHHHHHHHHcCCCcc-CCCCCCCCCccccccccccc-CCcccc
Q psy4112         199 PLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLS-KGQRYS  276 (284)
Q Consensus       199 pl~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~A~~~lG~~~~-D~n~~~~~~~G~~~~~~ti~-~G~R~s  276 (284)
                      |++++++..              +      ....++.+.|+++++++|++.. |+|++..  .|++..+.+++ +|.|+|
T Consensus       170 pl~v~~~~~--------------~------~~~~~~~~~~~~a~~~~G~~~~~D~n~~~~--~G~~~~~~t~~~~g~R~s  227 (583)
T 3qvp_A          170 TVHAGPRDT--------------G------DDYSPIVKALMSAVEDRGVPTKKDFGCGDP--HGVSMFPNTLHEDQVRSD  227 (583)
T ss_dssp             SEEEBCCCC--------------S------SCBCTHHHHHHHHHHTTTCCBCCCTTSSCC--CEEECCCBSBCTTCBBCC
T ss_pred             CEEecCCCC--------------c------ccCCHHHHHHHHHHHHcCCCcCCCCCCCCC--ceecccceeEcCCCcEec
Confidence            999987521              0      0146889999999999999986 8999888  99999899986 799999


Q ss_pred             hhhhccCC
Q psy4112         277 ANRAYLKS  284 (284)
Q Consensus       277 a~~ayL~~  284 (284)
                      ++++||.+
T Consensus       228 aa~ayL~p  235 (583)
T 3qvp_A          228 AAREWLLP  235 (583)
T ss_dssp             HHHHHTTT
T ss_pred             HHHHHHHH
Confidence            99999964

>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}

Probab=100.00  E-value=1.9e-38  Score=309.58  Aligned_cols=200  Identities=31%  Similarity=0.508  Sum_probs=173.4

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCccc-cccccccccccccCCcccccccccCCCCCccccCCCCCC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDEN-IYTNIPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYNDQ  130 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~-~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~~  130 (284)
                      ..+|||||||||++||++|.||+|+++++|||||+|+... .....|.....+..+.++|.|.++||.      +++++.
T Consensus        15 ~~~yD~IIVGsG~aG~v~A~rLse~~~~~VLvLEaG~~~~~~~~~~p~~~~~~~~~~~dw~~~t~p~~------~~~~~~   88 (526)
T 3t37_A           15 APNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWDYRTEAQA------GTAGRA   88 (526)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSBCCCCGGGGSGGGGGGTTTSTTBCCEECCCBG------GGTTBC
T ss_pred             CCCeeEEEECccHHHHHHHHHHHhCCCCeEEEEcCCCCCCCcchhChhhHhhccCCccccCccccccC------CCCCCe
Confidence            4579999999999999999999998899999999998753 445667776667778899999999998      778899


Q ss_pred             cccCcccccCCccccccccccCCChhhHHHHHhc-CCCCCChhhHHHHHHHHhhccCCCCCCCCCCcccCceeecCCcch
Q psy4112         131 CPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAA-GNKGWGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQN  209 (284)
Q Consensus       131 ~~~~rGk~lGGsS~iN~~~~~R~~~~D~d~W~~~-G~~gW~~~~l~pyf~k~E~~~~~~~~~~~hG~~Gpl~v~~~~~~~  209 (284)
                      +.++|||+|||||+||+|+|+|+++.|||.|++. ++.+|+|++++|||+++|++...  ....|+..|++.+.....  
T Consensus        89 ~~~~rG~~lGGsS~in~~~~~R~~~~Dfd~w~~~~~~~~w~~~~~~pyf~~~E~~~~~--~~~~~~~~g~~~~~~~~~--  164 (526)
T 3t37_A           89 HHWARGRLIGGSSCLHAMGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDHPLG--GDGIHGKGGPLPIHLPAD--  164 (526)
T ss_dssp             CEECCBCBTTGGGGTSCCBCCCCCHHHHHHHHHHHSCGGGSHHHHHHHHHHHEECTTT--TSSSSCSSCSEECBCCST--
T ss_pred             EeccCccEECcHHHHhhCEEecCCHHHHHHHHHhcCCCCCChhhhhhhhhhhhhccCC--CccccCcCCCcCcccccc--
Confidence            9999999999999999999999999999999875 88999999999999999998664  456788899988765433  


Q ss_pred             hhhhhhhcccCCCCcccCCcccchHHHHHHHHHHHcCCCcc-CCCCCCCCCcccccccccccCCcccchhhhccC
Q psy4112         210 LLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK  283 (284)
Q Consensus       210 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~A~~~lG~~~~-D~n~~~~~~~G~~~~~~ti~~G~R~sa~~ayL~  283 (284)
                                          ...|+.+.|.++++++|++.. +.|.+..  .|++.++.++.+|.|.|+..+|+.
T Consensus       165 --------------------~~~p~~~~~~~~~~~~G~~~~~~~~~~~~--~~~~~~~~~~~~g~r~s~~~~~~~  217 (526)
T 3t37_A          165 --------------------EVSPLARAFIEAGASLGLPRLEGHNSGEM--IGVTPNSLNIRDGRRVTAADAWLT  217 (526)
T ss_dssp             --------------------TSCHHHHHHHHHHHHTTCCBCSSSCSSCC--BSBCCCCBCEETTEECCHHHHHSC
T ss_pred             --------------------cCCHHHHHHHHHHHHcCCCcccCCCCCcc--cccccccccccCCccccccccccc
Confidence                                157899999999999999987 7777776  788888888899999999998874

>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}

Probab=100.00  E-value=3.8e-38  Score=313.58  Aligned_cols=198  Identities=30%  Similarity=0.491  Sum_probs=167.8

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc---ccccccccccccccCCcccccccccCCCCCccccCCCC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE---NIYTNIPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYN  128 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~---~~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~  128 (284)
                      .++|||||||+|.|||++|.||+|+++.+|||||+|+..   .+..++|.....+..+.++|.|.++.+          +
T Consensus         4 ~~~yDyIVVGgG~AG~v~A~rLse~~~~~VLllEaG~~~~~~~~~i~~P~~~~~~~~~~~dW~y~t~~~----------~   73 (577)
T 3q9t_A            4 GSHFDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWAYKTTMV----------R   73 (577)
T ss_dssp             TCEEEEEEESCSHHHHHHHHHHTTSTTSCEEEECSSCSCGGGCHHHHCGGGGGGGTTSTTBCCEEEEEE----------E
T ss_pred             CCcccEEEECCcHHHHHHHHHHHhCCCCcEEEEecCCCCCCCCceEECchhhhhccCCCcccceEEEEC----------C
Confidence            457999999999999999999999866899999999873   345677877766677889999988732          3


Q ss_pred             CCcc------cCcccccCCccccccccccCCChhhHHHHHhcCCCCCChhhHHHHHHHHhhccCCC----CCCCCCCccc
Q psy4112         129 DQCP------CPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGYDSVLKYFLKSENNTSEF----LDADIHSREG  198 (284)
Q Consensus       129 ~~~~------~~rGk~lGGsS~iN~~~~~R~~~~D~d~W~~~G~~gW~~~~l~pyf~k~E~~~~~~----~~~~~hG~~G  198 (284)
                      +.+.      ++|||+|||||+||+|+|+|+++.|||.|+++|+++|+|++|+|||+|+|++..+.    .+...||.+|
T Consensus        74 r~~~~~~~~~~~rGkvLGGsS~iN~m~~~rg~~~dyd~W~~~G~~gW~~~~~lpyf~k~e~~~~~~~~~~~~~~~hG~~G  153 (577)
T 3q9t_A           74 RDDYERIEKPNTRGKTLGGSSSLNYFTWVPGHKATFDQWEEFGGKEWTWDPLVPYLRKSATYHDDPRLYSPELEKIGGGG  153 (577)
T ss_dssp             ETTEEEEEEEECCBCSTTGGGGTSCCEECCCCHHHHHTTHHHHCGGGSHHHHHHHHHHTEEEECTTCCSCGGGGGGCCSC
T ss_pred             ccccccccccccccccccCccccCceEeccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhccCCCccccCCccccCCCCC
Confidence            4455      99999999999999999999999999999999999999999999999999987653    1234799999


Q ss_pred             CceeecCCcchhhhhhhhcccCCCCcccCCcccchHHHHHHHHHHHcCCCcc-CCCCCCCCCcccccccccccCCcccch
Q psy4112         199 PLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLSKGQRYSA  277 (284)
Q Consensus       199 pl~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~A~~~lG~~~~-D~n~~~~~~~G~~~~~~ti~~G~R~sa  277 (284)
                      |++++.+.+.                    +...++.+.|+++++++|++.. |+|++..  .|++..+.++++|.|+++
T Consensus       154 pl~v~~~~~~--------------------~~~~~~~~~~~~a~~~~G~~~~~d~n~~~~--~G~~~~~~~~~~g~R~s~  211 (577)
T 3q9t_A          154 PIPISHAELI--------------------DEMAPFRENLTKAWKSMGQPLIENIYDGEM--DGLTHCCDTIYRGQRSGS  211 (577)
T ss_dssp             SEEEEECCCC--------------------GGGHHHHHHHHHHHHHTTCCBCSCCSSSCC--CEEEECEESEETTEECCG
T ss_pred             CEEeeCCCCC--------------------cccchHHHHHHHHHHHcCCCcCCCCCCCCc--CeEEeecceecCCeEeeH
Confidence            9999876540                    0034688999999999999987 8999888  899999999999999987


Q ss_pred             hhhcc
Q psy4112         278 NRAYL  282 (284)
Q Consensus       278 ~~ayL  282 (284)
                      + +|+
T Consensus       212 ~-~~l  215 (577)
T 3q9t_A          212 F-LFV  215 (577)
T ss_dssp             G-GGS
T ss_pred             H-HHH
Confidence            6 465

>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1

Probab=100.00  E-value=3.9e-37  Score=306.72  Aligned_cols=202  Identities=29%  Similarity=0.421  Sum_probs=171.9

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCccc--cccc-cccccccccCCcccccccccCCCCCccccCCCC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDEN--IYTN-IPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYN  128 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~--~~~~-~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~  128 (284)
                      ..+||+||||+|++|+++|.+|+++++.+|+|||+|....  ...+ +|.....+..+.++|.|.++|        ++++
T Consensus        22 ~~~~d~iivG~G~~g~~~a~~l~~~~~~~v~~~e~g~~~~~~~~~~~~p~~~~~~~~~~~~w~~~t~p--------~~~~   93 (587)
T 1gpe_A           22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVP--------LINN   93 (587)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTSTTBCCEECCC--------CTTS
T ss_pred             cccCCEEEECcCHHHHHHHHHHHhCCCCcEEEEecCCccCCCcccccChhhHhhccCCcccccccccc--------CCCC
Confidence            3579999999999999999999997799999999998653  2334 676554444567899999887        2467


Q ss_pred             CCcccCcccccCCccccccccccCCChhhHHHHHhc-CCCCCChhhHHHHHHHHhhccCCC---------CCCCCCCccc
Q psy4112         129 DQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAA-GNKGWGYDSVLKYFLKSENNTSEF---------LDADIHSREG  198 (284)
Q Consensus       129 ~~~~~~rGk~lGGsS~iN~~~~~R~~~~D~d~W~~~-G~~gW~~~~l~pyf~k~E~~~~~~---------~~~~~hG~~G  198 (284)
                      +.+.++|||+|||||+||+|+|+|+++.|||.|+++ |++||+|++|+|||+|+|++.++.         .+..+||.+|
T Consensus        94 ~~~~~~rGk~lGGsS~in~~~~~R~~~~D~d~W~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~G~~~~~~~~g~~G  173 (587)
T 1gpe_A           94 RTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNG  173 (587)
T ss_dssp             CCCEECCBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHHTCCCCGGGCCBSS
T ss_pred             ceeeeeccccccccccccceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcccCCcccccccccccCccccCCCC
Confidence            889999999999999999999999999999999998 999999999999999999998752         2567899999


Q ss_pred             CceeecCCcchhhhhhhhcccCCCCcccCCcccchHHHHHHHHHHHcCCCcc-CCCCCCCCCccccccccccc-CCcccc
Q psy4112         199 PLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLS-KGQRYS  276 (284)
Q Consensus       199 pl~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~A~~~lG~~~~-D~n~~~~~~~G~~~~~~ti~-~G~R~s  276 (284)
                      |++++++..              +.      +.++..+.|.+|++++|++.. |+|++..  .|++.++.++. +|+|+|
T Consensus       174 pl~v~~~~~--------------~~------~~~~~~~~~~~a~~~~G~~~~~d~n~~~~--~G~~~~~~~~~~~g~R~s  231 (587)
T 1gpe_A          174 TVQSGARDN--------------GQ------PWSPIMKALMNTVSALGVPVQQDFLCGHP--RGVSMIMNNLDENQVRVD  231 (587)
T ss_dssp             SEEEBCCCC--------------SS------CBCTHHHHHHHHHHHTTCCBSCCTTSSCC--CEEECCEESBCTTCCBCC
T ss_pred             CEEEccCCC--------------cC------CCCHHHHHHHHHHHHcCCCcCCCCCCCCC--CEEEecceEECCCCcccC
Confidence            999985421              11      167899999999999999987 8999888  89998888775 799999


Q ss_pred             hhhhccC
Q psy4112         277 ANRAYLK  283 (284)
Q Consensus       277 a~~ayL~  283 (284)
                      ++.+||.
T Consensus       232 a~~~~l~  238 (587)
T 1gpe_A          232 AARAWLL  238 (587)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHH
Confidence            9999995

>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*

Probab=100.00  E-value=1.8e-35  Score=292.36  Aligned_cols=200  Identities=27%  Similarity=0.408  Sum_probs=171.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCccc--cccccccccccccCCcccccccccCCCCCccccCCCCCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDEN--IYTNIPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYNDQ  130 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~--~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~~  130 (284)
                      .+||+||||+|.+|+++|.+|+++++.+|+|||+|....  ...++|........+.++|.|.++||.      + +++.
T Consensus        12 ~~~d~~ivG~G~~G~~~a~~l~~~~~~~v~~~e~g~~~~~~~~~~~p~~~~~~~~~~~~w~~~~~p~~------~-~~~~   84 (546)
T 2jbv_A           12 REFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWDYPIEPQE------N-GNSF   84 (546)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHTTSTTSCEEEECSSCCCTTCHHHHBGGGGGGGTTSTTBCCEEBCCCS------S-SCTT
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhCCCCCEEEEecCCcCCCCccccChhhHHhhcCCcccccccccccC------C-CCce
Confidence            579999999999999999999996689999999998653  334556544333356789999999987      5 6788


Q ss_pred             cccCcccccCCccccccccccCCChhhHHHHHh-cCCCCCChhhHHHHHHHHhhccCCCCC-CCCCCcccCceeecCCcc
Q psy4112         131 CPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEA-AGNKGWGYDSVLKYFLKSENNTSEFLD-ADIHSREGPLKVTNIPYQ  208 (284)
Q Consensus       131 ~~~~rGk~lGGsS~iN~~~~~R~~~~D~d~W~~-~G~~gW~~~~l~pyf~k~E~~~~~~~~-~~~hG~~Gpl~v~~~~~~  208 (284)
                      +.+++||+|||||+||+|+|+|+++.|||.|++ +|+++|+|++|+|||+|+|++.++ .+ ..+||.+||++++.+.+ 
T Consensus        85 ~~~~rGk~lGGsS~in~~~~~R~~~~d~d~w~~~~G~~gW~~~~l~pyf~k~e~~~~~-~~~~~~~g~~Gpl~v~~~~~-  162 (546)
T 2jbv_A           85 MRHARAKVMGGCSSHNSCIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNEDA-GPDAPHHGDSGPVHLMNVPP-  162 (546)
T ss_dssp             CEECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEETTC-BTTBTTSCBSCSEEEEECCS-
T ss_pred             EEeecccccccCccccceEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhccCC-CCccccCCCCCCEEEecCCC-
Confidence            999999999999999999999999999999998 799999999999999999998873 23 56899999999886555 


Q ss_pred             hhhhhhhhcccCCCCcccCCcccchHHHHHHHHHHHcCCCccCCCCCCCCCccccccccccc-CCcccchhhhccC
Q psy4112         209 NLLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIYDYTGIEPATEGFSKLQSTLS-KGQRYSANRAYLK  283 (284)
Q Consensus       209 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~A~~~lG~~~~D~n~~~~~~~G~~~~~~ti~-~G~R~sa~~ayL~  283 (284)
                                            ..+..+.|.++++++|++..|+|+....+.|++.++.+|. +|.|+|+..+||.
T Consensus       163 ----------------------~~~~~~~~~~a~~~~G~~~~d~n~~~~~~~g~~~~~~~~~~~g~R~s~~~a~l~  216 (546)
T 2jbv_A          163 ----------------------KDPTGVALLDACEQAGIPRAKFNTGTTVVNGANFFQINRRADGTRSSSSVSYIH  216 (546)
T ss_dssp             ----------------------CCHHHHHHHHHHHHTTCCBCCSSSSSCCSSEEEECEECBCTTSBBCCHHHHHTG
T ss_pred             ----------------------CCHHHHHHHHHHHHCCCCccCCCCCCcCcceEEeeeeecCCCCeEcCHHHHHHH
Confidence                                  6789999999999999998888887611388888888999 9999999999985

>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*

Probab=99.95  E-value=7.9e-28  Score=235.51  Aligned_cols=193  Identities=15%  Similarity=0.143  Sum_probs=139.9

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcccccccccc---ccccc-cCCcccccccccCCCCC-------
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPL---LAHFN-SLTHFNWGYKLEKNEEH-------  120 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~~~~~~p~---~~~~~-~~~~~~w~~~~~p~~~~-------  120 (284)
                      ..+||+||||+|++|+++|.+|++ ++.+|+|||+|.....  .+|.   +.... ....++|.|.++||...       
T Consensus         9 ~~~~d~~iiG~G~~g~~~a~~l~~-~~~~v~~~e~~~~~~~--~~p~~~~~~~~~~~~~~~~w~~~~~pq~~~~~~~~~~   85 (507)
T 1coy_A            9 GDRVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDT--PGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGFGI   85 (507)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSCCSCS--CCTTSCSSCCSSSCCTTSBBSCSBCCCSSCSBTTBSC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHH-CCCcEEEEECCCCCCC--CCCcccccccccccccccccccccccccccccccccc
Confidence            467999999999999999999999 6999999999986432  2332   11111 23468999999987200       


Q ss_pred             --ccccCC------CCCCcccCcccccCCccccccccccCCChhhHHHHHhcCCCCCChhhHH-HHHHHHhhccCCCCCC
Q psy4112         121 --PQCLGM------YNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGYDSVL-KYFLKSENNTSEFLDA  191 (284)
Q Consensus       121 --~~~~~~------~~~~~~~~rGk~lGGsS~iN~~~~~R~~~~D~d~W~~~G~~gW~~~~l~-pyf~k~E~~~~~~~~~  191 (284)
                        ..+...      .++.+.+++||+|||||+||+|+|+|+++.|||.|+    ++|.|++|+ |||+|+|+++++.   
T Consensus        86 ~~~~~~~~g~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~dfd~w~----~~w~~~~l~~pyy~~~E~~~~~~---  158 (507)
T 1coy_A           86 NKSIDRYVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEIL----PSVDSNEMYNKYFPRANTGLGVN---  158 (507)
T ss_dssp             CCBCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHC----TTSCHHHHHHTHHHHHHHHHTCB---
T ss_pred             ccccccccceeeEecCCCeEEEEecccchHHHhhCeEEeeCCHHHHHhhC----CccchhcchhHHHHHHHHHhCCC---
Confidence              001123      567889999999999999999999999999999995    589999999 9999999988752   


Q ss_pred             CCCCcccCceeecCCcchhhhhhhhcccCCCCcccCCcccchHHHHHHHHHHHcCC-----Ccc-CCCCC-------CCC
Q psy4112         192 DIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGY-----RIY-DYTGI-------EPA  258 (284)
Q Consensus       192 ~~hG~~Gpl~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~A~~~lG~-----~~~-D~n~~-------~~~  258 (284)
                         +..+..   ....                     + ..++.+.|.++++++|+     +.. |+|++       .+.
T Consensus       159 ---~~~~~~---~~~~---------------------~-~~~~~~~~~~a~~~~G~~~~~~p~~~d~n~~~~~g~~~~~~  210 (507)
T 1coy_A          159 ---NIDQAW---FEST---------------------E-WYKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTK  210 (507)
T ss_dssp             ---CCCHHH---HHHC---------------------G-GGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTCSCC
T ss_pred             ---CCCCcc---cccc---------------------c-cchHHHHHHHHHHHcCCCCccCCcccccCcccccCCCcccC
Confidence               100000   0000                     0 25788999999999999     554 55432       112


Q ss_pred             CcccccccccccCCcccchhhhccC
Q psy4112         259 TEGFSKLQSTLSKGQRYSANRAYLK  283 (284)
Q Consensus       259 ~~G~~~~~~ti~~G~R~sa~~ayL~  283 (284)
                      |..++.+...|.+| |+++..+||.
T Consensus       211 ~~~~g~C~~gc~~g-R~s~~~~~l~  234 (507)
T 1coy_A          211 SGLGGEVIYGNNAG-KKSLDKTYLA  234 (507)
T ss_dssp             STTTTCSTTCCSSS-BCCTTTTHHH
T ss_pred             ccccccccccCCCC-CcChHHHHHH
Confidence            23333344568899 9999999984

>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*

Probab=99.94  E-value=2.2e-27  Score=232.12  Aligned_cols=194  Identities=20%  Similarity=0.185  Sum_probs=139.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCccc---cccccccccccccCCcccccccccCCCCC--------
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDEN---IYTNIPLLAHFNSLTHFNWGYKLEKNEEH--------  120 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~---~~~~~p~~~~~~~~~~~~w~~~~~p~~~~--------  120 (284)
                      ..+||+||||+|++|+++|.+|++ .+.+|+|||+|....   ...+.+... ......++|.|.++||...        
T Consensus         3 ~~~~d~~iiG~G~~g~~~a~~l~~-~~~~v~~~e~~~~~~~~~~~~~~~~~~-~~~~~~~~w~~~t~p~~~~~~l~~~~~   80 (504)
T 1n4w_A            3 GGYVPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGM-LNPDKRSSWFKNRTEAPLGSFLWLDVV   80 (504)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSCCCCCCCTTSSSSCCT-TSCCGGGSBSCSBCCCCTTCHHHHGGG
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHh-CCCcEEEEeCCCCCCCCCCcccccccc-cccCccccccccccccccccccccccc
Confidence            356999999999999999999999 699999999998543   122333221 1223457999999887200        


Q ss_pred             ----ccccC----CCCCCcccCcccccCCccccccccccCCChhhHHHHHhcCCCCCChhhHH-HHHHHHhhccCCCCCC
Q psy4112         121 ----PQCLG----MYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGYDSVL-KYFLKSENNTSEFLDA  191 (284)
Q Consensus       121 ----~~~~~----~~~~~~~~~rGk~lGGsS~iN~~~~~R~~~~D~d~W~~~G~~gW~~~~l~-pyf~k~E~~~~~~~~~  191 (284)
                          ..+.+    ..++.+.+++||+|||||+||+|+|+|+++.|||.|+    ++|.|++|+ |||+|+|+++++... 
T Consensus        81 ~~~~~~~~g~~~~~~~~~~~~~rg~~lGGsS~in~~~~~R~~~~Dfd~w~----~~w~~~~l~~pyy~~~E~~~~~~~~-  155 (504)
T 1n4w_A           81 NRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEIL----PRVDSSEMYDRYFPRANSMLRVNHI-  155 (504)
T ss_dssp             CCBCCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHC----TTSCHHHHHHTHHHHHHHHHTCBCC-
T ss_pred             cccccccccccceecCCceEEEEeeecchHHHhhCeEEEeCCHHHHHHhc----cccchhhhhhHHHHHHHHHhCCCCC-
Confidence                01111    1567889999999999999999999999999999995    789999999 999999998765210 


Q ss_pred             CCCCcccCceeecCCcchhhhhhhhcccCCCCcccCCcccchHHHHHHHHHHHcCC-----Ccc-CCCCC-------CCC
Q psy4112         192 DIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGY-----RIY-DYTGI-------EPA  258 (284)
Q Consensus       192 ~~hG~~Gpl~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~A~~~lG~-----~~~-D~n~~-------~~~  258 (284)
                           .+.++ +   .             +       + ..+..+.|.++++++|+     +.. |+|+.       ...
T Consensus       156 -----~~~~~-~---~-------------~-------~-~~p~~~~~~~a~~~~G~~~~~~p~~~d~n~~~~~g~g~~~~  205 (504)
T 1n4w_A          156 -----DTKWF-E---D-------------T-------E-WYKFARVSREQAGKAGLGTVFVPNVYDFGYMQREAAGEVPK  205 (504)
T ss_dssp             -----CHHHH-H---H-------------C-------G-GGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCC
T ss_pred             -----Ccccc-c---C-------------C-------C-cchHHHHHHHHHHHcCCCCccCCcccccCccccccCccccC
Confidence                 00110 0   0             0       0 24688999999999999     543 55421       223


Q ss_pred             CcccccccccccCCcccchhhhccC
Q psy4112         259 TEGFSKLQSTLSKGQRYSANRAYLK  283 (284)
Q Consensus       259 ~~G~~~~~~ti~~G~R~sa~~ayL~  283 (284)
                      |..++.+...|.+| |+++..+||.
T Consensus       206 ~~~~G~c~~g~~~g-r~s~~~~~l~  229 (504)
T 1n4w_A          206 SALATEVIYGNNHG-KQSLDKTYLA  229 (504)
T ss_dssp             SGGGTCSTTCCSSS-BCCTTTTHHH
T ss_pred             CcccccccccCCCC-ccCHHHHHHH
Confidence            34444445578999 9999999974

>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*

Probab=99.91  E-value=7.4e-25  Score=215.95  Aligned_cols=173  Identities=28%  Similarity=0.290  Sum_probs=123.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCccc--ccccccccc-ccccCCcccccccccCCCCCccccCCCC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDEN--IYTNIPLLA-HFNSLTHFNWGYKLEKNEEHPQCLGMYN  128 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~--~~~~~p~~~-~~~~~~~~~w~~~~~p~~~~~~~~~~~~  128 (284)
                      ..+|||||||+|++||++|.||+|  +.+|||||+|+...  .....|... ..+.  ..+| |.+.||.      .+.+
T Consensus        24 ~~~yD~IIVGsG~AG~v~A~rLse--g~~VlvLEaG~~~~~~~~~~~~~~~~~~~~--~~~~-~~t~~q~------~~~~   92 (536)
T 1ju2_A           24 EGSYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQ--QEDD-GKTPVER------FVSE   92 (536)
T ss_dssp             EEEEEEEEECCSTTHHHHHHHHTT--TSCEEEECSSBCGGGSGGGGBGGGHHHHHH--SCCC-SSSSEEE------EECT
T ss_pred             cCcccEEEECccHHHHHHHHHHhc--CCcEEEEecCCCcCCCcceecchhHhhhcc--CCCc-CcCCCcc------ccCC
Confidence            457999999999999999999999  78999999998752  222333221 1111  1235 6677776      4556


Q ss_pred             CCcccCcccccCCccccccccccCCChhhHHHHHhcCCCCCChhhHHHHHHHHhhccCCCCCCCCCCcccCceeecCCcc
Q psy4112         129 DQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQ  208 (284)
Q Consensus       129 ~~~~~~rGk~lGGsS~iN~~~~~R~~~~D~d~W~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~hG~~Gpl~v~~~~~~  208 (284)
                      +.+.+++||+|||||+||+|+|+|+++.||+.+   | .+|+|++++|||+++|+.....                 +. 
T Consensus        93 ~~~~~~rg~~lGGsS~in~~~~~R~~~~d~~~~---G-~~W~~~~~~p~~~~~e~~~~~~-----------------~~-  150 (536)
T 1ju2_A           93 DGIDNVRGRVLGGTSIINAGVYARANTSIYSAS---G-VDWDMDLVNQTYEWVEDTIVYK-----------------PN-  150 (536)
T ss_dssp             TSCEEEEECBTTGGGGTSCCEECBCCTTSSTTS---S-SCCCHHHHHHHHHHHHHHHCBC-----------------CC-
T ss_pred             CcceeecceeccccccccCeEEEeCCHHHHhhc---c-CCCChHHHHHHHHhhhcccCCC-----------------CC-
Confidence            778899999999999999999999999999742   2 2599999999999999864310                 11 


Q ss_pred             hhhhhhhhcccCCCCcccCCcccchHHHHHHHHHHHcCCCcc-CCCCCCC--CCcccccccccccCCcccchhhhccC
Q psy4112         209 NLLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIY-DYTGIEP--ATEGFSKLQSTLSKGQRYSANRAYLK  283 (284)
Q Consensus       209 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~A~~~lG~~~~-D~n~~~~--~~~G~~~~~~ti~~G~R~sa~~ayL~  283 (284)
                                            ..+....|.++++++|++.. ..+....  .+.|.+.+   ..+|.|+++.+ |+.
T Consensus       151 ----------------------~~~~~~~~~~a~~~~G~~~~~~~~~~~~~g~~~g~~~~---~~~g~r~s~~~-~~~  202 (536)
T 1ju2_A          151 ----------------------SQSWQSVTKTAFLEAGVHPNHGFSLDHEEGTRITGSTF---DNKGTRHAADE-LLN  202 (536)
T ss_dssp             ----------------------CCHHHHHHHHHHHHTTCCCEEEECCBCCSEEEECEESB---CTTSBBCCGGG-GGG
T ss_pred             ----------------------CCcHHHHHHHHHHHcCCCCCCCcccCCCCCceeeeEEE---CCCCeEecHHH-hhh
Confidence                                  34567889999999998642 1111111  00233221   25899999877 663

>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*

Probab=99.89  E-value=4.7e-23  Score=202.76  Aligned_cols=187  Identities=25%  Similarity=0.333  Sum_probs=126.8

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCccccc--ccc-ccccccccCCcccc----c-ccccCCCCCccc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIY--TNI-PLLAHFNSLTHFNW----G-YKLEKNEEHPQC  123 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~~~--~~~-p~~~~~~~~~~~~w----~-~~~~p~~~~~~~  123 (284)
                      ..+||+||||+|++|+++|.+|++ .+.+|+|||+|+.....  ... +..........+++    . ....+..     
T Consensus         5 ~~~~D~iIvG~G~aG~~~A~~L~~-~g~~VlvlE~g~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~-----   78 (546)
T 1kdg_A            5 ATPYDYIIVGAGPGGIIAADRLSE-AGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSNP-----   78 (546)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGGGGTCSCC-----
T ss_pred             CCceeEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCCCCcccccccccccccccccceeeccchhHHHhhcCCCc-----
Confidence            356999999999999999999999 59999999999854311  001 00000000000000    0 0001110     


Q ss_pred             cCCCCCCcccCcccccCCccccccccccCCChhhHHH---HHhcCCCCCChhhHHHHHHHHhhccCCCCCCCCCCcccCc
Q psy4112         124 LGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDT---YEAAGNKGWGYDSVLKYFLKSENNTSEFLDADIHSREGPL  200 (284)
Q Consensus       124 ~~~~~~~~~~~rGk~lGGsS~iN~~~~~R~~~~D~d~---W~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~hG~~Gpl  200 (284)
                       ........+++||+|||||+||+|+|+|+++.|||.   |    +.+|+|++  |||+|+|+..+.   ...++.+|+.
T Consensus        79 -~~~~~~~~~~~g~~lGGsS~in~~~~~r~~~~d~d~~~~W----~~~w~~~~--p~~~k~e~~~~~---~~~~~~~g~~  148 (546)
T 1kdg_A           79 -FWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSVGW----PSSWTNHA--PYTSKLSSRLPS---TDHPSTDGQR  148 (546)
T ss_dssp             -TTBCTTBSSCCBCSTTGGGGTSCCBCCCCCGGGGCGGGTC----CGGGSCCH--HHHHHHHHHSCC---BSCCSTTSCC
T ss_pred             -cccccccccccceeecccccccceEEecCChHHhcCcccC----ccccCccc--HHHHHHHhcCCC---CccCCCCCCc
Confidence             011123567899999999999999999999999998   8    57899999  999999997642   1233333431


Q ss_pred             eeecCCcchhhhhhhhcccCCCCcccCCcccchHHHHHHHHHHHcCCCccCCCC-CCCCCcccccccccccCCcccchhh
Q psy4112         201 KVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIYDYTG-IEPATEGFSKLQSTLSKGQRYSANR  279 (284)
Q Consensus       201 ~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~A~~~lG~~~~D~n~-~~~~~~G~~~~~~ti~~G~R~sa~~  279 (284)
                            +                       ..+....|.++++++|++..+.+. ......|++..+.++.+|.|+|+..
T Consensus       149 ------~-----------------------~~~~~~~~~~a~~~~G~~~~~~~~~~~~~~~g~~~~~~~~~~g~R~s~~~  199 (546)
T 1kdg_A          149 ------Y-----------------------LEQSFNVVSQLLKGQGYNQATINDNPNYKDHVFGYSAFDFLNGKRAGPVA  199 (546)
T ss_dssp             ------C-----------------------SCHHHHHHHHHHHTTTCEECCGGGSTTCCTTEEEECCBCEETTEECHHHH
T ss_pred             ------c-----------------------CCHHHHHHHHHHHHCCCCcCCccCCcCCCCcEEeeeeeccCCCcccCHHH
Confidence                  2                       456778899999999998765332 1111268888888899999999998


Q ss_pred             hccC
Q psy4112         280 AYLK  283 (284)
Q Consensus       280 ayL~  283 (284)
                      +||.
T Consensus       200 ~~l~  203 (546)
T 1kdg_A          200 TYLQ  203 (546)
T ss_dssp             THHH
T ss_pred             HHHH
Confidence            8874

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.42  E-value=1.7e-07  Score=78.64  Aligned_cols=36  Identities=25%  Similarity=0.425  Sum_probs=32.8

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ++||+|||+|++|+++|..|++ .+.+|+|||+.+..
T Consensus         2 t~dV~IIGaGpaGL~aA~~La~-~G~~V~v~Ek~~~~   37 (336)
T 3kkj_A            2 TVPIAIIGTGIAGLSAAQALTA-AGHQVHLFDKSRGS   37 (336)
T ss_dssp             CCCEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHH-CCCCEEEEECCCCC
Confidence            4899999999999999999999 59999999997643

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=98.28  E-value=4.5e-07  Score=82.98  Aligned_cols=37  Identities=32%  Similarity=0.598  Sum_probs=33.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      +.|||||||+|++|+++|..|++ .+.+|+|||+.+..
T Consensus         3 e~yDViIVGaGpaGl~~A~~La~-~G~~V~v~Er~~~~   39 (397)
T 3oz2_A            3 ETYDVLVVGGGPGGSTAARYAAK-YGLKTLMIEKRPEI   39 (397)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSST
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH-CCCcEEEEeCCCCC
Confidence            46999999999999999999999 59999999997653

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=98.12  E-value=5.1e-06  Score=83.04  Aligned_cols=129  Identities=17%  Similarity=0.109  Sum_probs=72.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcccccc------cccccc---c--------cccCC---------
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYT------NIPLLA---H--------FNSLT---------  106 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~~~~------~~p~~~---~--------~~~~~---------  106 (284)
                      ..||+||||+|++|+.+|..|++ .+.+|+|||++.......      ......   .        .....         
T Consensus        45 ~~~dvvIIG~G~aGl~aA~~l~~-~G~~V~liE~~~~~gg~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~l~~~~~  123 (623)
T 3pl8_A           45 IKYDVVIVGSGPIGCTYARELVG-AGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSVPVNTLVV  123 (623)
T ss_dssp             -CEEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSCCCSSSSTTCCTTCSHHHHHSGGGTHHHHHHTCEESCCCCCCCCC
T ss_pred             ccCCEEEECCcHHHHHHHHHHHh-CCCcEEEEeccCCCCCcccccccccccCCCccHHHHHHHHHHhhhhcccccccccc
Confidence            46999999999999999999999 599999999987543110      000000   0        00000         


Q ss_pred             ----cccccccccCCCCCccccCCCCCCcc----cCcccccCCccccccccccCCChhhHHHHHhcCCCCC-ChhhHHHH
Q psy4112         107 ----HFNWGYKLEKNEEHPQCLGMYNDQCP----CPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGW-GYDSVLKY  177 (284)
Q Consensus       107 ----~~~w~~~~~p~~~~~~~~~~~~~~~~----~~rGk~lGGsS~iN~~~~~R~~~~D~d~W~~~G~~gW-~~~~l~py  177 (284)
                          ..+|.-...--  ...+... .....    ...+..+||.+.++.+...|..+.+  .+..+.+.++ .++++.++
T Consensus       124 ~~~~~~~~~~~~v~l--~~g~~~~-~~~~~~l~~~~~~~~vGG~~~~~~g~~~r~~~~e--~~~~l~~~~v~~~~~l~~~  198 (623)
T 3pl8_A          124 DTLSPTSWQASTFFV--RNGSNPE-QDPLRNLSGQAVTRVVGGMSTAWTCATPRFDREQ--RPLLVKDDADADDAEWDRL  198 (623)
T ss_dssp             CCSCTTSCCCSSCCS--CTTCCTT-CCTTSCCTTCEECCSTTGGGGTCCCBCCCCCGGG--SCCSSTTCHHHHHHHHHHH
T ss_pred             ccccccccccCcEEe--ccCCCcc-cccchhhhhhcccccccCcceeeccccccCChHH--hhhhhcccCccChhhHHHH
Confidence                00111100000  0000000 00111    2257789999999999999987753  2211122223 56888999


Q ss_pred             HHHHhhccCC
Q psy4112         178 FLKSENNTSE  187 (284)
Q Consensus       178 f~k~E~~~~~  187 (284)
                      |.+.|.....
T Consensus       199 ~~~~~~l~~v  208 (623)
T 3pl8_A          199 YTKAESYFQT  208 (623)
T ss_dssp             HHHHHHHHTE
T ss_pred             HHHHHHhccc
Confidence            9998887653

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=97.99  E-value=4e-06  Score=75.30  Aligned_cols=36  Identities=19%  Similarity=0.363  Sum_probs=31.9

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      .+.||++|||+|++|+++|.+|++ .+++|+|+|++.
T Consensus         4 M~~yDVvIIGaGpAGlsAA~~lar-~g~~v~lie~~~   39 (304)
T 4fk1_A            4 MKYIDCAVIGAGPAGLNASLVLGR-ARKQIALFDNNT   39 (304)
T ss_dssp             --CEEEEEECCSHHHHHHHHHHHH-TTCCEEEEECSC
T ss_pred             CCCcCEEEECCCHHHHHHHHHHHH-CCCCEEEEeCCC
Confidence            567999999999999999999999 599999999874

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=97.98  E-value=5.3e-06  Score=75.49  Aligned_cols=38  Identities=29%  Similarity=0.483  Sum_probs=33.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhc-CCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSE-NPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~-~~~~~vl~lE~G~~~   90 (284)
                      .++|++|||+|++|+++|.+|++ ..+.+|+|+|++...
T Consensus        64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~  102 (326)
T 3fpz_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP  102 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCC
Confidence            46899999999999999999985 368999999998654

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=97.98  E-value=3.4e-06  Score=80.67  Aligned_cols=40  Identities=25%  Similarity=0.316  Sum_probs=35.1

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCccc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDEN   91 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~   91 (284)
                      ...+||||||+|++|+++|.+|++..+.+|+|||+.....
T Consensus         8 ~~~~DVvIIGaGisGLsaA~~L~k~~G~~V~VlE~~~~~G   47 (513)
T 4gde_A            8 DISVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPG   47 (513)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHHHCCSCEEEEESSSSCC
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhhCCCCEEEEECCCCCc
Confidence            4469999999999999999999974589999999987653

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=97.95  E-value=5.8e-06  Score=75.04  Aligned_cols=35  Identities=34%  Similarity=0.580  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      .++|+||||+|++|+++|.+|++ .+.+|+|||++.
T Consensus         3 ~~~dvvIIG~G~~Gl~~A~~La~-~G~~V~vlE~~~   37 (369)
T 3dme_A            3 TDIDCIVIGAGVVGLAIARALAA-GGHEVLVAEAAE   37 (369)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHh-CCCeEEEEeCCC
Confidence            46999999999999999999999 599999999985

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=97.94  E-value=5.5e-06  Score=73.95  Aligned_cols=35  Identities=29%  Similarity=0.288  Sum_probs=32.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      +.||++|||+|+||+++|.+|++ .+.+|+|+|++.
T Consensus         3 ~~yDvvIIG~GpAGl~AA~~la~-~g~~v~liE~~~   37 (314)
T 4a5l_A            3 NIHDVVIIGSGPAAHTAAIYLGR-SSLKPVMYEGFM   37 (314)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH-TTCCCEEECCSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHH-CCCCEEEEecCC
Confidence            46999999999999999999999 599999999865

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=97.92  E-value=6.1e-06  Score=74.05  Aligned_cols=34  Identities=32%  Similarity=0.563  Sum_probs=31.7

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      +||++|||+|+||+++|.+|++ .+.+|+|+|++.
T Consensus         6 ~yDvvIIG~GpAGl~aA~~l~~-~g~~V~liE~~~   39 (312)
T 4gcm_A            6 DFDIAIIGAGPAGMTAAVYASR-ANLKTVMIERGI   39 (312)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHH-CCCCEEEEecCC
Confidence            6999999999999999999999 599999999864

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=97.89  E-value=7.9e-06  Score=75.83  Aligned_cols=36  Identities=36%  Similarity=0.549  Sum_probs=33.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++|+||||+|++|+++|..|++ .+.+|+|||++..
T Consensus         3 ~~~DVvIIGaG~~Gl~~A~~La~-~G~~V~vlE~~~~   38 (397)
T 2oln_A            3 ESYDVVVVGGGPVGLATAWQVAE-RGHRVLVLERHTF   38 (397)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSCT
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence            46999999999999999999999 5999999999864

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=97.85  E-value=1.1e-05  Score=75.80  Aligned_cols=38  Identities=21%  Similarity=0.324  Sum_probs=34.0

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCC-eEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKW-KVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~-~vl~lE~G~~~   90 (284)
                      ..++|+||||+|.+|+++|.+|++ .+. +|+|||++...
T Consensus         4 ~~~~dVvIIGgG~aGlsaA~~La~-~G~~~V~vlE~~~~~   42 (438)
T 3dje_A            4 TKSSSLLIVGAGTWGTSTALHLAR-RGYTNVTVLDPYPVP   42 (438)
T ss_dssp             CTTSCEEEECCSHHHHHHHHHHHH-TTCCCEEEEESSCSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHH-cCCCcEEEEeCCCCC
Confidence            346999999999999999999999 588 99999998753

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=97.85  E-value=1.2e-05  Score=73.97  Aligned_cols=37  Identities=38%  Similarity=0.581  Sum_probs=33.7

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ..++|+||||+|.+|+++|..|++ .+.+|+|||++..
T Consensus        15 ~~~~dvvIIGgG~~Gl~~A~~La~-~G~~V~llE~~~~   51 (382)
T 1ryi_A           15 KRHYEAVVIGGGIIGSAIAYYLAK-ENKNTALFESGTM   51 (382)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSST
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHh-CCCcEEEEeCCCC
Confidence            567999999999999999999999 5999999999753

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=97.85  E-value=1.2e-05  Score=74.45  Aligned_cols=41  Identities=34%  Similarity=0.443  Sum_probs=35.7

Q ss_pred             CCCCCCCcccEEEECCChHHHHHHHHHhc-CCC-CeEEEeccCC
Q psy4112          47 GNKPILSEYDFVIIGGGVGGSVVANRLSE-NPK-WKVLLLESGE   88 (284)
Q Consensus        47 ~~~~~~~~~d~iivg~G~~g~~~a~~l~~-~~~-~~vl~lE~G~   88 (284)
                      ..+....++|+||||+|.+|+++|..|++ . + .+|+|||++.
T Consensus        14 ~~~~~~~~~dVvIIG~G~~Gl~~A~~La~~~-G~~~V~vlE~~~   56 (405)
T 2gag_B           14 ANPEPKKSYDAIIVGGGGHGLATAYFLAKNH-GITNVAVLEKGW   56 (405)
T ss_dssp             CCCCCCSEEEEEEECCSHHHHHHHHHHHHHH-CCCCEEEECSSS
T ss_pred             cCCCCCCcCCEEEECcCHHHHHHHHHHHHhc-CCCcEEEEeCCC
Confidence            34445668999999999999999999998 6 7 8999999986

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=97.82  E-value=1.4e-05  Score=76.30  Aligned_cols=38  Identities=24%  Similarity=0.458  Sum_probs=34.9

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..++|+||||+|.+|+++|.+|++ .+++|+|||+....
T Consensus         9 ~~~~dvvVIGaG~~GL~aA~~La~-~G~~V~vlE~~~~~   46 (453)
T 2bcg_G            9 DTDYDVIVLGTGITECILSGLLSV-DGKKVLHIDKQDHY   46 (453)
T ss_dssp             CCBCSEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             cccCCEEEECcCHHHHHHHHHHHH-CCCeEEEEeCCCCC
Confidence            467999999999999999999999 59999999998765

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=97.81  E-value=1.2e-05  Score=75.25  Aligned_cols=34  Identities=47%  Similarity=0.781  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      +|+||||+|++|+++|.+|++ .+.+|+|||+...
T Consensus         2 ~dVvVIGaG~aGl~aA~~L~~-~G~~V~vlE~~~~   35 (431)
T 3k7m_X            2 YDAIVVGGGFSGLKAARDLTN-AGKKVLLLEGGER   35 (431)
T ss_dssp             EEEEEECCBHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHH-cCCeEEEEecCCC
Confidence            899999999999999999999 5999999999654

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=97.79  E-value=1.7e-05  Score=72.73  Aligned_cols=36  Identities=28%  Similarity=0.320  Sum_probs=32.7

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ..++|+||||+|.+|+++|.+|++ .+.+|+|||++.
T Consensus         4 ~~~~dVvVIG~Gi~Gls~A~~La~-~G~~V~vle~~~   39 (363)
T 1c0p_A            4 HSQKRVVVLGSGVIGLSSALILAR-KGYSVHILARDL   39 (363)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHh-CCCEEEEEeccC
Confidence            356999999999999999999999 599999999864

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=97.78  E-value=1.7e-05  Score=73.99  Aligned_cols=39  Identities=21%  Similarity=0.337  Sum_probs=33.4

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..+.+|+||||+|++|+++|..|++ .+.+|+|||+.+..
T Consensus        20 ~~~~~dV~IVGaG~aGl~~A~~La~-~G~~V~v~E~~~~~   58 (407)
T 3rp8_A           20 FQGHMKAIVIGAGIGGLSAAVALKQ-SGIDCDVYEAVKEI   58 (407)
T ss_dssp             ---CCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSSCC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHh-CCCCEEEEeCCCCC
Confidence            3567999999999999999999999 59999999998754

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=97.77  E-value=2.1e-05  Score=72.37  Aligned_cols=35  Identities=29%  Similarity=0.503  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      .++|+||||+|.+|+++|.+|++ .+.+|+|||++.
T Consensus         4 ~~~dVvIIGgGi~Gl~~A~~La~-~G~~V~lle~~~   38 (382)
T 1y56_B            4 EKSEIVVIGGGIVGVTIAHELAK-RGEEVTVIEKRF   38 (382)
T ss_dssp             SBCSEEEECCSHHHHHHHHHHHH-TTCCEEEECSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence            46999999999999999999999 599999999984

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=97.75  E-value=1.7e-05  Score=77.00  Aligned_cols=38  Identities=26%  Similarity=0.275  Sum_probs=34.3

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..++||||||+|.+|+++|.+|++ .+.+|+|||+++..
T Consensus        39 ~~~~DVvVVGaG~AGl~AA~~aa~-~G~~V~vlEk~~~~   76 (510)
T 4at0_A           39 DYEADVVVAGYGIAGVAASIEAAR-AGADVLVLERTSGW   76 (510)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHH-CCCcEEEEeCCCCC
Confidence            457999999999999999999999 59999999998653

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=97.75  E-value=1.5e-05  Score=72.89  Aligned_cols=35  Identities=26%  Similarity=0.476  Sum_probs=32.3

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ++|+||||+|.+|+++|..|++ .+.+|+|||++..
T Consensus         2 ~~dvvIIG~Gi~Gl~~A~~La~-~G~~V~vle~~~~   36 (372)
T 2uzz_A            2 KYDLIIIGSGSVGAAAGYYATR-AGLNVLMTDAHMP   36 (372)
T ss_dssp             CEEEEESCTTHHHHHHHHHHHH-TTCCEEEECSSCS
T ss_pred             CCCEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence            4899999999999999999999 5999999999864

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=97.74  E-value=1.9e-05  Score=72.56  Aligned_cols=35  Identities=23%  Similarity=0.485  Sum_probs=32.3

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ++|+||||+|.+|+++|..|++ .+.+|+|||++..
T Consensus         3 ~~dvvIIGaG~~Gl~~A~~La~-~G~~V~vie~~~~   37 (389)
T 2gf3_A            3 HFDVIVVGAGSMGMAAGYQLAK-QGVKTLLVDAFDP   37 (389)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSCS
T ss_pred             cCCEEEECCCHHHHHHHHHHHh-CCCeEEEEeCCCC
Confidence            5899999999999999999999 5999999999754

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=97.74  E-value=2e-05  Score=73.38  Aligned_cols=36  Identities=28%  Similarity=0.505  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++|+||||+|++|+++|..|++ .+.+|+|||+...
T Consensus         4 ~~~dVvIIGgG~aGl~~A~~La~-~G~~V~v~E~~~~   39 (421)
T 3nix_A            4 EKVDVLVIGAGPAGTVAASLVNK-SGFKVKIVEKQKF   39 (421)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHT-TTCCEEEECSSCS
T ss_pred             ccCcEEEECCCHHHHHHHHHHHh-CCCCEEEEeCCCC
Confidence            35999999999999999999999 5999999999863

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=97.73  E-value=2.4e-05  Score=70.01  Aligned_cols=38  Identities=32%  Similarity=0.552  Sum_probs=33.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|++|||+|++|+.+|..|++.++.+|+|||++...
T Consensus        38 ~~~dVvIIGgG~aGl~aA~~la~~~G~~V~viEk~~~~   75 (284)
T 1rp0_A           38 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSP   75 (284)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSC
T ss_pred             cccCEEEECccHHHHHHHHHHHHcCCCeEEEEECCCCC
Confidence            45899999999999999999998338999999998654

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=97.71  E-value=2.9e-05  Score=77.83  Aligned_cols=38  Identities=29%  Similarity=0.470  Sum_probs=33.6

Q ss_pred             CCCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          50 PILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        50 ~~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      +....+||||||+|.+|+++|..|++ .+.+|+|||++.
T Consensus       268 ~~~~~~DVvIIGgGiaGlsaA~~La~-~G~~V~vlEk~~  305 (676)
T 3ps9_A          268 TGSSKREAAIIGGGIASALLSLALLR-RGWQVTLYCADE  305 (676)
T ss_dssp             CCCSCCEEEEECCSHHHHHHHHHHHT-TTCEEEEEESSS
T ss_pred             ccCCCCCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence            34456999999999999999999999 599999999964

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=97.70  E-value=2.5e-05  Score=74.24  Aligned_cols=39  Identities=26%  Similarity=0.454  Sum_probs=32.6

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ...++|+||||+|++|+++|..|++ .+.+|+|||+++..
T Consensus        24 ~~~~~dViIIGgG~AGl~aA~~La~-~G~~V~llEk~~~~   62 (417)
T 3v76_A           24 VAEKQDVVIIGAGAAGMMCAIEAGK-RGRRVLVIDHARAP   62 (417)
T ss_dssp             ----CCEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             cCCCCCEEEECcCHHHHHHHHHHHH-CCCcEEEEeCCCCC
Confidence            3567999999999999999999999 59999999998753

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=97.69  E-value=2.4e-05  Score=72.96  Aligned_cols=35  Identities=34%  Similarity=0.466  Sum_probs=32.0

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      +|+||||+|.+|+++|.+|++ .+.+|+|||++...
T Consensus         1 ~dVvVIGaGiaGLsaA~~La~-~G~~V~vlE~~~~~   35 (425)
T 3ka7_A            1 MKTVVIGAGLGGLLSAARLSK-AGHEVEVFERLPIT   35 (425)
T ss_dssp             CEEEEECCBHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             CcEEEECCCHHHHHHHHHHHh-CCCceEEEeCCCCC
Confidence            489999999999999999999 59999999998654

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=97.65  E-value=3e-05  Score=72.87  Aligned_cols=39  Identities=26%  Similarity=0.480  Sum_probs=34.3

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..++|++|||+|.+|+++|.+|++.++.+|+|||++...
T Consensus         5 ~~~~~v~IiGaG~~Gl~aA~~L~~~~g~~v~v~E~~~~~   43 (399)
T 1v0j_A            5 TARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHI   43 (399)
T ss_dssp             CCSCSEEEECCSHHHHHHHHHHHHHSCCCEEEECSSSSS
T ss_pred             cccCCEEEECCCHHHHHHHHHHHHhCCCCEEEEeCCCCC
Confidence            346999999999999999999998338999999998754

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=97.65  E-value=3.2e-05  Score=76.15  Aligned_cols=35  Identities=26%  Similarity=0.452  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      .+||+||||+|++|+.+|..|++ .+.+|+|||++.
T Consensus        17 ~~~DVvVIGgGi~Gl~~A~~La~-~G~~V~LlEk~d   51 (561)
T 3da1_A           17 KQLDLLVIGGGITGAGIALDAQV-RGIQTGLVEMND   51 (561)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHT-TTCCEEEEESSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHh-CCCcEEEEECCC
Confidence            46999999999999999999999 599999999984

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=97.65  E-value=3.5e-05  Score=74.67  Aligned_cols=39  Identities=26%  Similarity=0.386  Sum_probs=35.7

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      +.++||+||||+|.+|+++|.+|++ .+.+|+|||+++..
T Consensus        17 ~~~~~dv~iiG~G~~g~~~a~~l~~-~g~~v~~~e~~~~~   55 (475)
T 3p1w_A           17 QGEHYDVIILGTGLKECILSGLLSH-YGKKILVLDRNPYY   55 (475)
T ss_dssp             CCCEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             ccccCCEEEECCCHHHHHHHHHHHH-CCCcEEEEeccCCC
Confidence            4678999999999999999999999 59999999999765

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=97.63  E-value=3e-05  Score=73.14  Aligned_cols=37  Identities=24%  Similarity=0.392  Sum_probs=33.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|+||||+|++|+++|..|++ .+.+|+|||+++..
T Consensus         3 ~~~dViIIGgG~aGl~aA~~la~-~G~~V~vlEk~~~~   39 (401)
T 2gqf_A            3 QYSENIIIGAGAAGLFCAAQLAK-LGKSVTVFDNGKKI   39 (401)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHh-CCCCEEEEeCCCCC
Confidence            35999999999999999999999 59999999998753

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=97.63  E-value=3.4e-05  Score=73.34  Aligned_cols=35  Identities=46%  Similarity=0.691  Sum_probs=32.6

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ++|+||||+|++|+++|..|++ .+.+|+|||+.+.
T Consensus         6 ~~dVvIVGaG~aGl~aA~~La~-~G~~V~vlE~~~~   40 (453)
T 3atr_A            6 KYDVLIIGGGFAGSSAAYQLSR-RGLKILLVDSKPW   40 (453)
T ss_dssp             ECSEEEECCSHHHHHHHHHHSS-SSCCEEEECSSCG
T ss_pred             cCCEEEECcCHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence            5899999999999999999999 5999999999864

>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7

Probab=97.62  E-value=4.1e-05  Score=66.37  Aligned_cols=34  Identities=29%  Similarity=0.445  Sum_probs=31.8

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      +||++|||+|++|+.+|..|++ .+.+|+|||++.
T Consensus         3 ~~dVvVVGgG~aGl~aA~~la~-~g~~v~lie~~~   36 (232)
T 2cul_A            3 AYQVLIVGAGFSGAETAFWLAQ-KGVRVGLLTQSL   36 (232)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH-TTCCEEEEESCG
T ss_pred             CCCEEEECcCHHHHHHHHHHHH-CCCCEEEEecCC
Confidence            5899999999999999999999 599999999974

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=97.60  E-value=4.1e-05  Score=71.21  Aligned_cols=36  Identities=39%  Similarity=0.653  Sum_probs=32.6

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ++|++|||+|++|+++|.+|++ .+.+|+|||++...
T Consensus         1 ~~~v~iiG~G~~Gl~~A~~l~~-~g~~v~v~E~~~~~   36 (367)
T 1i8t_A            1 MYDYIIVGSGLFGAVCANELKK-LNKKVLVIEKRNHI   36 (367)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGG-GTCCEEEECSSSSS
T ss_pred             CCCEEEECcCHHHHHHHHHHHh-CCCcEEEEecCCCC
Confidence            3799999999999999999999 48999999998654

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=97.59  E-value=4.1e-05  Score=69.89  Aligned_cols=36  Identities=31%  Similarity=0.533  Sum_probs=32.3

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ..++|+||||+|.+|+++|.+|++  +.+|+|||++..
T Consensus         7 ~~~~dv~IIGaGi~Gls~A~~La~--G~~V~vlE~~~~   42 (381)
T 3nyc_A            7 PIEADYLVIGAGIAGASTGYWLSA--HGRVVVLEREAQ   42 (381)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHTT--TSCEEEECSSSS
T ss_pred             CCcCCEEEECCcHHHHHHHHHHhC--CCCEEEEECCCC
Confidence            346899999999999999999993  899999999854

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=97.58  E-value=4.6e-05  Score=71.38  Aligned_cols=34  Identities=24%  Similarity=0.457  Sum_probs=31.3

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      |+||||+|.+|+++|.+|++ .+.+|+|||+....
T Consensus         2 dVvVIGaGiaGLsaA~~La~-~G~~V~vlE~~~~~   35 (421)
T 3nrn_A            2 RAVVVGAGLGGLLAGAFLAR-NGHEIIVLEKSAMI   35 (421)
T ss_dssp             EEEEESCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             cEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCCCC
Confidence            89999999999999999999 59999999997654

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=97.58  E-value=4.6e-05  Score=72.36  Aligned_cols=39  Identities=28%  Similarity=0.453  Sum_probs=32.5

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ....+|+||||+|.+|+++|..|++ .+.+|+|||+....
T Consensus        13 ~~~~~~v~iiG~G~~Gl~aa~~l~~-~g~~v~v~E~~~~~   51 (478)
T 2ivd_A           13 RTTGMNVAVVGGGISGLAVAHHLRS-RGTDAVLLESSARL   51 (478)
T ss_dssp             ----CCEEEECCBHHHHHHHHHHHT-TTCCEEEECSSSSS
T ss_pred             CCCCCcEEEECCCHHHHHHHHHHHH-CCCCEEEEEcCCCC
Confidence            4556999999999999999999999 59999999998754

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=97.58  E-value=3.4e-05  Score=73.69  Aligned_cols=35  Identities=37%  Similarity=0.526  Sum_probs=30.1

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      -+|||||+|.+|+++|.+|++ .+++|+|||+....
T Consensus         2 k~VvVIGaG~~GL~aA~~La~-~G~~V~VlEa~~~~   36 (501)
T 4dgk_A            2 KPTTVIGAGFGGLALAIRLQA-AGIPVLLLEQRDKP   36 (501)
T ss_dssp             CCEEEECCHHHHHHHHHHHHH-TTCCEEEECCC---
T ss_pred             CCEEEECCcHHHHHHHHHHHH-CCCcEEEEccCCCC
Confidence            479999999999999999999 59999999997654

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=97.57  E-value=5.1e-05  Score=70.45  Aligned_cols=37  Identities=30%  Similarity=0.554  Sum_probs=33.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|+||||+|++|+++|..|++ .+.+|+|||+.+..
T Consensus         5 ~~~dVvIVGaG~aGl~~A~~L~~-~G~~V~viE~~~~~   41 (399)
T 2x3n_A            5 NHIDVLINGCGIGGAMLAYLLGR-QGHRVVVVEQARRE   41 (399)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSCCC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHh-CCCcEEEEeCCCCC
Confidence            35899999999999999999999 59999999998643

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=97.57  E-value=5.6e-05  Score=76.03  Aligned_cols=37  Identities=27%  Similarity=0.278  Sum_probs=33.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ...+||||||+|.+|+++|..|++ .+.+|+|||++..
T Consensus       262 ~~~~DVvIIGgGiaGlsaA~~La~-~G~~V~vlEk~~~  298 (689)
T 3pvc_A          262 TRCDDIAIIGGGIVSALTALALQR-RGAVVTLYCADAQ  298 (689)
T ss_dssp             SCCSSEEEECCSHHHHHHHHHHHT-TTCCEEEEESSSS
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHH-CCCcEEEEeCCCc
Confidence            346999999999999999999999 5999999999753

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=97.57  E-value=4.8e-05  Score=72.40  Aligned_cols=36  Identities=39%  Similarity=0.651  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++|+||||+|++|+++|..|++ .+.+|+|||+.+.
T Consensus        25 ~~~dVvIIGgG~aGl~aA~~la~-~G~~V~llEk~~~   60 (447)
T 2i0z_A           25 MHYDVIVIGGGPSGLMAAIGAAE-EGANVLLLDKGNK   60 (447)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             CCCCEEEECCcHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence            45999999999999999999999 5899999998864

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=97.57  E-value=4.3e-05  Score=71.12  Aligned_cols=37  Identities=35%  Similarity=0.536  Sum_probs=33.2

Q ss_pred             cccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE   90 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~   90 (284)
                      +||+||||+|++|+.+|..|++. ++.+|+|||++...
T Consensus        79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~  116 (344)
T 3jsk_A           79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAP  116 (344)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSC
T ss_pred             cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCcc
Confidence            58999999999999999999984 48999999998653

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=97.56  E-value=3.8e-05  Score=71.94  Aligned_cols=37  Identities=35%  Similarity=0.539  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~   89 (284)
                      .++|+||||+|.+|+++|..|++. ++.+|+|||++..
T Consensus        35 ~~~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~   72 (405)
T 3c4n_A           35 EAFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGL   72 (405)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCS
T ss_pred             CcCCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence            459999999999999999999982 2899999999753

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=97.56  E-value=6.5e-05  Score=69.97  Aligned_cols=37  Identities=35%  Similarity=0.486  Sum_probs=33.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ...+|+||||+|++|+++|..|++ .+.+|+|||+.+.
T Consensus        24 ~~~~dV~IVGaG~aGl~~A~~L~~-~G~~v~v~E~~~~   60 (398)
T 2xdo_A           24 LSDKNVAIIGGGPVGLTMAKLLQQ-NGIDVSVYERDND   60 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHT-TTCEEEEEECSSS
T ss_pred             cCCCCEEEECCCHHHHHHHHHHHH-CCCCEEEEeCCCC
Confidence            456899999999999999999999 5999999999864

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=97.56  E-value=5.2e-05  Score=73.33  Aligned_cols=35  Identities=31%  Similarity=0.616  Sum_probs=32.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      +++|+||||+|.+|+.+|..|++ .+.+|+|||++.
T Consensus         2 ~~~DVvIIGgGi~G~~~A~~La~-~G~~V~llE~~~   36 (501)
T 2qcu_A            2 ETKDLIVIGGGINGAGIAADAAG-RGLSVLMLEAQD   36 (501)
T ss_dssp             -CBSEEEECCSHHHHHHHHHHHH-TTCCEEEECSSS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHh-CCCCEEEEECCC
Confidence            35999999999999999999999 599999999975

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=97.56  E-value=5.4e-05  Score=74.65  Aligned_cols=38  Identities=18%  Similarity=0.246  Sum_probs=33.9

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ...+|+||||+|++|+.+|..|++ .+.+|+|||++...
T Consensus       105 ~~~~DVVIVGgGpaGL~aA~~La~-~G~kV~VlEr~~~~  142 (549)
T 3nlc_A          105 NLTERPIVIGFGPCGLFAGLVLAQ-MGFNPIIVERGKEV  142 (549)
T ss_dssp             TCCCCCEEECCSHHHHHHHHHHHH-TTCCCEEECSSCCH
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHH-CCCeEEEEEccCcc
Confidence            345899999999999999999999 69999999999643

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=97.55  E-value=5.2e-05  Score=70.90  Aligned_cols=37  Identities=35%  Similarity=0.485  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCe-EEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWK-VLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~-vl~lE~G~~~   90 (284)
                      ..+|+||||+|++|+++|..|++ .+.+ |+|||+.+..
T Consensus         3 ~~~dVvIVGaG~aGl~~A~~L~~-~G~~~v~v~E~~~~~   40 (410)
T 3c96_A            3 EPIDILIAGAGIGGLSCALALHQ-AGIGKVTLLESSSEI   40 (410)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHH-TTCSEEEEEESSSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHh-CCCCeEEEEECCCCc
Confidence            35899999999999999999999 5999 9999998653

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=97.55  E-value=4.5e-05  Score=72.93  Aligned_cols=35  Identities=31%  Similarity=0.542  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      .+||++|||+|++|+++|.+|++ .+.+|+|||++.
T Consensus         2 ~~~DVvVIGgG~aGl~aA~~la~-~G~~V~liEk~~   36 (476)
T 3lad_A            2 QKFDVIVIGAGPGGYVAAIKSAQ-LGLKTALIEKYK   36 (476)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHH-HTCCEEEEECCB
T ss_pred             CcCCEEEECcCHHHHHHHHHHHh-CCCEEEEEeCCC
Confidence            46999999999999999999999 599999999986

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=97.54  E-value=4.6e-05  Score=70.54  Aligned_cols=35  Identities=23%  Similarity=0.370  Sum_probs=32.3

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ++|+||||+|++|+++|..|++ .+.+|+|||+.+.
T Consensus         2 ~~dV~IvGaG~aGl~~A~~L~~-~G~~v~v~E~~~~   36 (394)
T 1k0i_A            2 KTQVAIIGAGPSGLLLGQLLHK-AGIDNVILERQTP   36 (394)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHH-HTCCEEEECSSCH
T ss_pred             CccEEEECCCHHHHHHHHHHHH-CCCCEEEEeCCCC
Confidence            4899999999999999999999 5999999998864

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=97.54  E-value=4.3e-05  Score=75.57  Aligned_cols=36  Identities=36%  Similarity=0.518  Sum_probs=32.8

Q ss_pred             cccEEEECCChHHHHHHHHHhcCC------CCeEEEeccCCcc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENP------KWKVLLLESGEDE   90 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~------~~~vl~lE~G~~~   90 (284)
                      ++|+||||+|++|+++|.+|++ .      +.+|+|||++...
T Consensus        35 ~~DVvIVGaG~aGlaaA~~La~-~~~~~~~G~~V~vlEk~~~~   76 (584)
T 2gmh_A           35 EADVVIVGAGPAGLSAATRLKQ-LAAQHEKDLRVCLVEKAAHI   76 (584)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHH-HHHHTTCCCCEEEECSSSST
T ss_pred             CCCEEEECcCHHHHHHHHHHHh-cccccCCCCcEEEEeCCCCC
Confidence            5999999999999999999998 4      8999999998654

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=97.54  E-value=6.5e-05  Score=72.82  Aligned_cols=39  Identities=23%  Similarity=0.357  Sum_probs=34.8

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ...++||||||+|++|+++|..|++ .+.+|+|||+.+..
T Consensus         8 ~~~~~dVlIVGaGpaGl~~A~~La~-~G~~v~vlE~~~~~   46 (500)
T 2qa1_A            8 HRSDAAVIVVGAGPAGMMLAGELRL-AGVEVVVLERLVER   46 (500)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHH-TTCCEEEEESCCC-
T ss_pred             ccCCCCEEEECcCHHHHHHHHHHHH-CCCCEEEEeCCCCC
Confidence            4678999999999999999999999 59999999998654

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=97.53  E-value=7e-05  Score=70.92  Aligned_cols=38  Identities=32%  Similarity=0.637  Sum_probs=34.3

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ...+|++|||+|++|+++|.+|++ .+.+|+|||+.+..
T Consensus        27 ~~~~dv~IIGaG~aGl~aA~~l~~-~g~~v~v~E~~~~~   64 (397)
T 3hdq_A           27 SKGFDYLIVGAGFAGSVLAERLAS-SGQRVLIVDRRPHI   64 (397)
T ss_dssp             CCCEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHH-CCCceEEEeccCCC
Confidence            457999999999999999999999 49999999998654

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=97.53  E-value=5.4e-05  Score=73.33  Aligned_cols=36  Identities=39%  Similarity=0.648  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++|+||||+|++|+++|..|++ .+.+|+|||+...
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~-~G~~V~liE~~~~   41 (512)
T 3e1t_A            6 EVFDLIVIGGGPGGSTLASFVAM-RGHRVLLLEREAF   41 (512)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHT-TTCCEEEECSSCS
T ss_pred             ccCCEEEECcCHHHHHHHHHHHh-CCCCEEEEccCCC
Confidence            46999999999999999999999 5999999999863

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=97.52  E-value=6.2e-05  Score=73.94  Aligned_cols=37  Identities=27%  Similarity=0.348  Sum_probs=33.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++||||||+|++|+++|..|++ .+.+|+|||+.+..
T Consensus       125 ~~~DVvVVGaG~aGl~aA~~la~-~G~~V~vlEk~~~~  161 (571)
T 1y0p_A          125 DTVDVVVVGSGGAGFSAAISATD-SGAKVILIEKEPVI  161 (571)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEeCCCCC
Confidence            36999999999999999999999 59999999998754

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=97.52  E-value=6.9e-05  Score=69.24  Aligned_cols=37  Identities=27%  Similarity=0.416  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..+|+||||+|++|+++|..|++ .+.+|+|||+....
T Consensus        10 ~~~dVvIVGaG~aGl~~A~~L~~-~G~~v~viE~~~~~   46 (379)
T 3alj_A           10 KTRRAEVAGGGFAGLTAAIALKQ-NGWDVRLHEKSSEL   46 (379)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH-CCCCEEEEecCCCC
Confidence            45899999999999999999999 59999999998654

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=97.51  E-value=7.7e-05  Score=69.67  Aligned_cols=37  Identities=22%  Similarity=0.326  Sum_probs=33.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCC-CeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPK-WKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~-~~vl~lE~G~~~   90 (284)
                      ..+|+||||+|.+|+++|.+|++ .+ .+|+|+|+....
T Consensus         5 ~~~~v~IIGaG~aGl~aA~~L~~-~g~~~v~v~E~~~~~   42 (424)
T 2b9w_A            5 KDSRIAIIGAGPAGLAAGMYLEQ-AGFHDYTILERTDHV   42 (424)
T ss_dssp             TTCCEEEECCSHHHHHHHHHHHH-TTCCCEEEECSSSCS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHh-CCCCcEEEEECCCCC
Confidence            56899999999999999999999 48 899999997654

>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*

Probab=97.51  E-value=6.6e-05  Score=74.08  Aligned_cols=35  Identities=37%  Similarity=0.558  Sum_probs=32.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      .++|+||||+|.+|+.+|..|++ .+.+|+|||++.
T Consensus        31 ~~~DVvVIGgGi~G~~~A~~La~-rG~~V~LlE~~~   65 (571)
T 2rgh_A           31 EELDLLIIGGGITGAGVAVQAAA-SGIKTGLIEMQD   65 (571)
T ss_dssp             SCBSEEEECCSHHHHHHHHHHHH-TTCCEEEECSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH-CCCcEEEEeCCC
Confidence            35999999999999999999999 599999999985

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=97.51  E-value=7.6e-05  Score=71.24  Aligned_cols=39  Identities=28%  Similarity=0.459  Sum_probs=34.7

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      +...+|++|||+|.+|+++|..|++ .+.+|+|||+....
T Consensus         8 ~~~~~~v~IIGaG~aGl~aA~~L~~-~g~~v~v~E~~~~~   46 (489)
T 2jae_A            8 VKGSHSVVVLGGGPAGLCSAFELQK-AGYKVTVLEARTRP   46 (489)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             ccCCCCEEEECCCHHHHHHHHHHHH-CCCCEEEEeccCCC
Confidence            3557899999999999999999999 58999999998754

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=97.50  E-value=6.8e-05  Score=72.40  Aligned_cols=37  Identities=30%  Similarity=0.602  Sum_probs=33.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..+|+||||+|.+|+++|.+|++ .+.+|+|||+....
T Consensus         3 ~~~~vvIIGaG~aGL~aA~~L~~-~G~~V~vlE~~~~~   39 (520)
T 1s3e_A            3 NKCDVVVVGGGISGMAAAKLLHD-SGLNVVVLEARDRV   39 (520)
T ss_dssp             CBCSEEEECCBHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             CCceEEEECCCHHHHHHHHHHHH-CCCCEEEEeCCCCC
Confidence            45899999999999999999999 59999999997654

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=97.49  E-value=6.2e-05  Score=72.77  Aligned_cols=37  Identities=27%  Similarity=0.456  Sum_probs=33.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCC-CeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPK-WKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~-~~vl~lE~G~~~   90 (284)
                      ..+|+||||+|.+|+++|.+|++ .+ .+|+|||+....
T Consensus         7 ~~~~VvIIGaG~aGL~AA~~L~~-~G~~~V~VlEa~~ri   44 (516)
T 1rsg_A            7 AKKKVIIIGAGIAGLKAASTLHQ-NGIQDCLVLEARDRV   44 (516)
T ss_dssp             EEEEEEEECCBHHHHHHHHHHHH-TTCCSEEEECSSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHh-cCCCCEEEEeCCCCC
Confidence            46899999999999999999999 58 999999998654

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=97.49  E-value=8.4e-05  Score=69.15  Aligned_cols=36  Identities=19%  Similarity=0.316  Sum_probs=33.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ..+|++|||+|++|+++|..|++ .+.+|+|+|+.+.
T Consensus         4 ~~~~V~IVGaG~aGl~~A~~L~~-~G~~v~v~E~~~~   39 (397)
T 2vou_A            4 TTDRIAVVGGSISGLTAALMLRD-AGVDVDVYERSPQ   39 (397)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             CCCcEEEECCCHHHHHHHHHHHh-CCCCEEEEecCCC
Confidence            35899999999999999999999 5999999999865

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=97.48  E-value=5.8e-05  Score=74.14  Aligned_cols=38  Identities=13%  Similarity=0.217  Sum_probs=34.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..++||||||+|++|+++|..|++ .+.+|+|||+.+..
T Consensus       119 ~~~~DVvVVG~G~aGl~aA~~la~-~G~~V~vlEk~~~~  156 (566)
T 1qo8_A          119 SETTQVLVVGAGSAGFNASLAAKK-AGANVILVDKAPFS  156 (566)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHH-HTCCEEEECSSSSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEeCCCCC
Confidence            357999999999999999999999 59999999998754

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=97.48  E-value=4.1e-05  Score=72.01  Aligned_cols=36  Identities=28%  Similarity=0.438  Sum_probs=32.3

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCC------CeEEEeccCCcc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPK------WKVLLLESGEDE   90 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~------~~vl~lE~G~~~   90 (284)
                      .+|+||||+|.+|+++|.+|++. +      .+|+|||+....
T Consensus         5 ~~dVvIIGaGiaGLsaA~~L~~~-G~~~~~~~~V~vlEa~~~~   46 (470)
T 3i6d_A            5 KKHVVIIGGGITGLAAAFYMEKE-IKEKNLPLELTLVEASPRV   46 (470)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHH-HTTTTCSEEEEEECSSSSS
T ss_pred             CCcEEEECCCHHHHHHHHHHHHh-ccccCCCCCEEEEECCCCC
Confidence            48999999999999999999994 6      899999997543

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=97.48  E-value=7.4e-05  Score=71.77  Aligned_cols=34  Identities=26%  Similarity=0.402  Sum_probs=31.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      .+||+||||+|++|+++|.+|++ .+.+|+|||++
T Consensus        25 ~~~DVvVIGgG~aGl~aA~~la~-~G~~V~liEk~   58 (484)
T 3o0h_A           25 FDFDLFVIGSGSGGVRAARLAGA-LGKRVAIAEEY   58 (484)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHh-CcCEEEEEeCC
Confidence            36999999999999999999999 59999999984

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=97.47  E-value=7.2e-05  Score=68.01  Aligned_cols=35  Identities=23%  Similarity=0.427  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHhcC--CCCeEEEeccCCc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSEN--PKWKVLLLESGED   89 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~--~~~~vl~lE~G~~   89 (284)
                      +|++|||+|++|+++|..|++.  .+.+|+|+|++..
T Consensus         2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~   38 (342)
T 3qj4_A            2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADD   38 (342)
T ss_dssp             EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSS
T ss_pred             CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCC
Confidence            6999999999999999999982  3899999998754

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=97.46  E-value=8.4e-05  Score=65.28  Aligned_cols=34  Identities=35%  Similarity=0.703  Sum_probs=31.2

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      .+|++|||+|++|+.+|..|++ .+.+|+|+|++.
T Consensus         2 ~~~vvIIG~G~aGl~aA~~l~~-~g~~v~lie~~~   35 (297)
T 3fbs_A            2 KFDVIIIGGSYAGLSAALQLGR-ARKNILLVDAGE   35 (297)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH-TTCCEEEEECCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHh-CCCCEEEEeCCC
Confidence            3899999999999999999999 589999999864

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=97.46  E-value=4.9e-05  Score=71.75  Aligned_cols=33  Identities=30%  Similarity=0.532  Sum_probs=31.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCC-CeEEEecc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPK-WKVLLLES   86 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~-~~vl~lE~   86 (284)
                      .++|+||||+|.+|+++|.+|++. + .+|+|||+
T Consensus        22 ~~~dVvIIGgGiaGls~A~~La~~-G~~~V~vlE~   55 (448)
T 3axb_A           22 PRFDYVVVGAGVVGLAAAYYLKVW-SGGSVLVVDA   55 (448)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHHH-HCSCEEEEES
T ss_pred             CcCCEEEECcCHHHHHHHHHHHhC-CCCcEEEEcc
Confidence            579999999999999999999994 7 89999999

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=97.46  E-value=7.9e-05  Score=70.60  Aligned_cols=35  Identities=37%  Similarity=0.592  Sum_probs=31.7

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCC--eEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKW--KVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~--~vl~lE~G~~~   90 (284)
                      .|++|||+|.+|+++|.+|++ .+.  +|+|||+....
T Consensus         3 ~dVvVIGaGiaGLsaA~~L~~-~G~~~~V~vlEa~~~~   39 (477)
T 3nks_A            3 RTVVVLGGGISGLAASYHLSR-APCPPKVVLVESSERL   39 (477)
T ss_dssp             CEEEEECCBHHHHHHHHHHHT-SSSCCEEEEECSSSSS
T ss_pred             ceEEEECCcHHHHHHHHHHHh-CCCCCcEEEEeCCCCC
Confidence            699999999999999999999 488  99999997643

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=97.46  E-value=8.3e-05  Score=66.86  Aligned_cols=35  Identities=26%  Similarity=0.444  Sum_probs=32.5

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .+|++|||+|++|+.+|..|++ .+.+|+|||+.+.
T Consensus         3 ~~~vvIIG~G~aGl~~A~~l~~-~g~~v~vie~~~~   37 (357)
T 4a9w_A            3 SVDVVVIGGGQSGLSAGYFLRR-SGLSYVILDAEAS   37 (357)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH-SSCCEEEECCSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence            5899999999999999999999 5999999999864

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=97.45  E-value=7.5e-05  Score=74.00  Aligned_cols=36  Identities=31%  Similarity=0.363  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++||||||+|.+|+++|..|++ .+.+|+|||++..
T Consensus         6 ~~~DVvVVGaG~AGl~AA~~la~-~G~~V~vlEK~~~   41 (588)
T 2wdq_A            6 REFDAVVIGAGGAGMRAALQISQ-SGQTCALLSKVFP   41 (588)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSCG
T ss_pred             ccCCEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCC
Confidence            46999999999999999999999 5999999999854

>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*

Probab=97.45  E-value=9.8e-05  Score=60.86  Aligned_cols=33  Identities=36%  Similarity=0.676  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ||++|||+|++|+.+|..|++ .+.+|+|||+++
T Consensus         2 ~~vvIIGgG~~Gl~~A~~l~~-~g~~v~lie~~~   34 (180)
T 2ywl_A            2 WDVIVVGGGPSGLSAALFLAR-AGLKVLVLDGGR   34 (180)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH-TTCCEEEEECSC
T ss_pred             CeEEEECCCHHHHHHHHHHHH-CCCcEEEEeCCC
Confidence            799999999999999999999 599999999986

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=97.45  E-value=7.9e-05  Score=66.70  Aligned_cols=36  Identities=25%  Similarity=0.253  Sum_probs=32.4

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ...+|++|||+|++|+.+|..|++ .+.+|+|||+.+
T Consensus        20 ~~~~~vvIIG~G~aGl~aA~~l~~-~g~~v~vie~~~   55 (338)
T 3itj_A           20 HVHNKVTIIGSGPAAHTAAIYLAR-AEIKPILYEGMM   55 (338)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHH-TTCCCEEECCSS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHH-CCCCEEEEecCC
Confidence            457999999999999999999999 599999999954

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=97.44  E-value=8.8e-05  Score=69.91  Aligned_cols=37  Identities=24%  Similarity=0.395  Sum_probs=33.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|+||||+|++|+++|.+|++ .+.+|+|||+....
T Consensus         4 ~~~~v~iiG~G~~Gl~aA~~l~~-~g~~v~v~E~~~~~   40 (453)
T 2yg5_A            4 LQRDVAIVGAGPSGLAAATALRK-AGLSVAVIEARDRV   40 (453)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH-CCCcEEEEECCCCC
Confidence            35899999999999999999999 59999999998654

>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}

Probab=97.44  E-value=9.3e-05  Score=73.06  Aligned_cols=37  Identities=30%  Similarity=0.389  Sum_probs=31.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++||||||+|++|+++|..|++ .+.+|+|||+.+..
T Consensus        48 ~~~DVvIVGaG~aGL~~A~~La~-~G~~V~VlEr~~~~   84 (570)
T 3fmw_A           48 LTTDVVVVGGGPVGLMLAGELRA-GGVGALVLEKLVEP   84 (570)
T ss_dssp             ---CEEEECCSHHHHHHHHHHHH-TTCCEEEEBSCSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH-CCCCEEEEcCCCCC
Confidence            46999999999999999999999 59999999998654

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=97.44  E-value=9.4e-05  Score=71.66  Aligned_cols=38  Identities=24%  Similarity=0.372  Sum_probs=33.9

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..++||||||+|++|+++|..|++ .+.+|+|||+.+..
T Consensus        10 ~~~~dVlIVGaGpaGl~~A~~La~-~G~~v~vlE~~~~~   47 (499)
T 2qa2_A           10 RSDASVIVVGAGPAGLMLAGELRL-GGVDVMVLEQLPQR   47 (499)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESCSSC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHH-CCCCEEEEECCCCC
Confidence            467999999999999999999999 59999999997654

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=97.43  E-value=0.0001  Score=66.05  Aligned_cols=35  Identities=26%  Similarity=0.490  Sum_probs=32.1

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      ...+|++|||+|++|+.+|..|++ .+.+|+|||+.
T Consensus        14 ~~~~dvvIIG~G~aGl~aA~~l~~-~g~~v~lie~~   48 (319)
T 3cty_A           14 ERDFDVVIVGAGAAGFSAAVYAAR-SGFSVAILDKA   48 (319)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESS
T ss_pred             cCCCcEEEECcCHHHHHHHHHHHh-CCCcEEEEeCC
Confidence            456999999999999999999999 58999999985

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=97.43  E-value=0.00011  Score=73.03  Aligned_cols=37  Identities=30%  Similarity=0.407  Sum_probs=33.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ...+|+||||+|++|+++|..|++ .+.+|+|||+...
T Consensus        21 M~~~DVvIVGgG~AGl~aA~~Lar-~G~~V~LiEr~~~   57 (591)
T 3i3l_A           21 MTRSKVAIIGGGPAGSVAGLTLHK-LGHDVTIYERSAF   57 (591)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSCS
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHc-CCCCEEEEcCCCC
Confidence            446999999999999999999999 5999999999854

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=97.43  E-value=0.00011  Score=69.62  Aligned_cols=38  Identities=24%  Similarity=0.383  Sum_probs=34.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..++|+||||+|.+|+++|.+|++ .+.+|+|+|+....
T Consensus         4 ~~~~~v~iiG~G~~gl~~a~~l~~-~g~~v~~~e~~~~~   41 (433)
T 1d5t_A            4 DEEYDVIVLGTGLTECILSGIMSV-NGKKVLHMDRNPYY   41 (433)
T ss_dssp             CSBCSEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCCc
Confidence            457999999999999999999999 59999999998654

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=97.43  E-value=9.7e-05  Score=71.72  Aligned_cols=37  Identities=30%  Similarity=0.471  Sum_probs=33.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++||||||+|++|+++|..|++ .+.+|+|||+.+..
T Consensus         4 ~~~dVlIVGaG~aGl~~A~~La~-~G~~v~viEr~~~~   40 (535)
T 3ihg_A            4 HEVDVLVVGAGLGGLSTAMFLAR-QGVRVLVVERRPGL   40 (535)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHT-TTCCEEEECSSSSC
T ss_pred             ccCcEEEECcCHHHHHHHHHHHH-CCCCEEEEeCCCCC
Confidence            46999999999999999999999 59999999998754

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=97.43  E-value=0.0001  Score=67.23  Aligned_cols=37  Identities=27%  Similarity=0.302  Sum_probs=32.9

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ...+|++|||+|++|+.+|..|++ .+.+|+|||+.+.
T Consensus        12 ~~~~dvvIIG~G~aGl~aA~~l~~-~g~~v~lie~~~~   48 (360)
T 3ab1_A           12 HDMRDLTIIGGGPTGIFAAFQCGM-NNISCRIIESMPQ   48 (360)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHh-CCCCEEEEecCCC
Confidence            346999999999999999999999 5999999999764

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=97.42  E-value=0.0001  Score=65.75  Aligned_cols=36  Identities=33%  Similarity=0.338  Sum_probs=32.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ..+|++|||+|++|+.+|..|++ .+.+|+|||+.+.
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~-~g~~v~lie~~~~   41 (332)
T 3lzw_A            6 KVYDITIIGGGPVGLFTAFYGGM-RQASVKIIESLPQ   41 (332)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHH-CCCCEEEEEcCCC
Confidence            35899999999999999999999 5999999999764

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=97.42  E-value=0.00011  Score=65.97  Aligned_cols=35  Identities=40%  Similarity=0.648  Sum_probs=32.4

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      ...+|++|||+|++|+.+|..|++ .+.+|+|||++
T Consensus         6 ~~~~dvvIIG~G~aGl~aA~~l~~-~g~~v~lie~~   40 (325)
T 2q7v_A            6 AHDYDVVIIGGGPAGLTAAIYTGR-AQLSTLILEKG   40 (325)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESS
T ss_pred             cccCCEEEECCCHHHHHHHHHHHH-cCCcEEEEeCC
Confidence            456999999999999999999999 58999999997

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=97.42  E-value=6.2e-05  Score=68.62  Aligned_cols=32  Identities=25%  Similarity=0.275  Sum_probs=29.8

Q ss_pred             cEEEECCChHHHHHHHHHhcCCC------CeEEEeccCC
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPK------WKVLLLESGE   88 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~------~~vl~lE~G~   88 (284)
                      |+||||+|.+|+++|..|++. +      .+|+|||++.
T Consensus         2 dVvIIGgGi~Gls~A~~La~~-G~~~~p~~~V~vlE~~~   39 (351)
T 3g3e_A            2 RVVVIGAGVIGLSTALCIHER-YHSVLQPLDIKVYADRF   39 (351)
T ss_dssp             EEEEECCSHHHHHHHHHHHHH-HTTTSSSCEEEEEESSC
T ss_pred             cEEEECCCHHHHHHHHHHHHh-ccccCCCceEEEEECCC
Confidence            899999999999999999994 4      8999999985

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=97.42  E-value=0.00011  Score=65.98  Aligned_cols=36  Identities=14%  Similarity=0.224  Sum_probs=32.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ..+|++|||+|++|+.+|..|++ .+.+|+|+|+.+.
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~-~g~~v~lie~~~~   39 (335)
T 2zbw_A            4 DHTDVLIVGAGPTGLFAGFYVGM-RGLSFRFVDPLPE   39 (335)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSSS
T ss_pred             CcCcEEEECCCHHHHHHHHHHHh-CCCCEEEEeCCCC
Confidence            46999999999999999999998 5999999999764

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=97.42  E-value=9.8e-05  Score=65.54  Aligned_cols=34  Identities=21%  Similarity=0.259  Sum_probs=31.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      ..+|++|||+|++|+.+|.+|++ .+.+|+|||+.
T Consensus        14 ~~~~vvIIG~G~aGl~aA~~l~~-~g~~v~lie~~   47 (323)
T 3f8d_A           14 EKFDVIIVGLGPAAYGAALYSAR-YMLKTLVIGET   47 (323)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESS
T ss_pred             CccCEEEECccHHHHHHHHHHHH-CCCcEEEEecc
Confidence            36999999999999999999999 59999999995

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=97.41  E-value=0.0001  Score=70.25  Aligned_cols=33  Identities=33%  Similarity=0.502  Sum_probs=31.1

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      +||+||||+|++|+++|.+|++ .+.+|+|||++
T Consensus         5 ~~DVvVIGaG~aGl~aA~~la~-~G~~V~liEk~   37 (463)
T 4dna_A            5 DYDLFVIGGGSGGVRSGRLAAA-LGKKVAIAEEF   37 (463)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHT-TTCCEEEEESS
T ss_pred             CCcEEEECcCHHHHHHHHHHHh-CCCEEEEEeCC
Confidence            5999999999999999999999 59999999984

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=97.41  E-value=9.5e-05  Score=72.46  Aligned_cols=36  Identities=33%  Similarity=0.585  Sum_probs=32.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++||||||+|.+|+++|..|++  +.+|+|||++...
T Consensus         7 ~~~DVvVVG~G~AGl~aAl~la~--G~~V~vlEk~~~~   42 (540)
T 1chu_A            7 HSCDVLIIGSGAAGLSLALRLAD--QHQVIVLSKGPVT   42 (540)
T ss_dssp             EECSEEEECCSHHHHHHHHHHTT--TSCEEEECSSCTT
T ss_pred             CCCCEEEECccHHHHHHHHHHhc--CCcEEEEECCCCC
Confidence            46999999999999999999998  8999999998743

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=97.40  E-value=9.4e-05  Score=73.92  Aligned_cols=37  Identities=27%  Similarity=0.288  Sum_probs=33.3

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ..++||||||+|.+|+.+|..|++ .+.+|+|||++..
T Consensus        16 ~~~~DVvVVG~G~AGl~AAl~aa~-~G~~V~vlEK~~~   52 (621)
T 2h88_A           16 DHEFDAVVVGAGGAGLRAAFGLSE-AGFNTACVTKLFP   52 (621)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSCG
T ss_pred             cccCCEEEECccHHHHHHHHHHHH-CCCcEEEEeccCC
Confidence            346999999999999999999999 5999999999753

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=97.40  E-value=0.0001  Score=74.10  Aligned_cols=36  Identities=22%  Similarity=0.272  Sum_probs=32.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++||||||+|.+|+++|..|++ .+.+|+|||++..
T Consensus         4 ~~~DVvVIGgG~AGL~AAl~aae-~G~~V~vlEK~~~   39 (660)
T 2bs2_A            4 QYCDSLVIGGGLAGLRAAVATQQ-KGLSTIVLSLIPV   39 (660)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHT-TTCCEEEECSSCG
T ss_pred             ccccEEEECchHHHHHHHHHHHH-CCCcEEEEeccCC
Confidence            36899999999999999999999 5999999999763

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=97.39  E-value=0.00011  Score=70.57  Aligned_cols=37  Identities=32%  Similarity=0.577  Sum_probs=31.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ...||++|||+|++|+++|.+|++ .+.+|+|||+.+.
T Consensus        23 m~~~dVvVIGgG~aGl~aA~~la~-~G~~V~liEk~~~   59 (491)
T 3urh_A           23 MMAYDLIVIGSGPGGYVCAIKAAQ-LGMKVAVVEKRST   59 (491)
T ss_dssp             ---CCEEEECCSHHHHHHHHHHHH-TTCCEEEEESSSS
T ss_pred             cccCCEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCC
Confidence            346999999999999999999999 5999999998653

>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A

Probab=97.39  E-value=0.0001  Score=73.95  Aligned_cols=35  Identities=31%  Similarity=0.479  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      .+||+||||+|++|+.+|..|++ .+.+|+|||.+.
T Consensus        27 ~~yDVIVIGgG~AGl~AAlaLAr-~G~kVlLIEk~~   61 (651)
T 3ces_A           27 DPFDVIIIGGGHAGTEAAMAAAR-MGQQTLLLTHNI   61 (651)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESCG
T ss_pred             CcCCEEEECChHHHHHHHHHHHh-CCCCEEEEeecc
Confidence            56999999999999999999999 599999999874

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=97.39  E-value=0.00011  Score=70.29  Aligned_cols=35  Identities=34%  Similarity=0.629  Sum_probs=32.4

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      +|+||||+|.+|+++|.+|++ .+.+|+|||+....
T Consensus        40 ~~v~iiGaG~aGl~aA~~l~~-~g~~v~v~E~~~~~   74 (495)
T 2vvm_A           40 WDVIVIGGGYCGLTATRDLTV-AGFKTLLLEARDRI   74 (495)
T ss_dssp             EEEEEECCBHHHHHHHHHHHH-TTCCEEEECSSSBS
T ss_pred             CCEEEECCcHHHHHHHHHHHH-CCCCEEEEeCCCCC
Confidence            899999999999999999999 59999999997654

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=97.39  E-value=0.00011  Score=70.35  Aligned_cols=36  Identities=36%  Similarity=0.594  Sum_probs=32.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .+||+||||+|++|+++|.+|++ .+.+|+|||+.+.
T Consensus         3 ~~~DVvVIGgG~aGl~aA~~l~~-~G~~V~liEk~~~   38 (466)
T 3l8k_A            3 LKYDVVVIGAGGAGYHGAFRLAK-AKYNVLMADPKGE   38 (466)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECTTSS
T ss_pred             ccceEEEECCCHHHHHHHHHHHh-CCCeEEEEECCCC
Confidence            35999999999999999999999 5999999996543

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=97.37  E-value=0.00013  Score=69.84  Aligned_cols=38  Identities=26%  Similarity=0.350  Sum_probs=33.3

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ...+|+||||+|.+|+++|..|++ .+.+|+|+|+....
T Consensus        11 ~~~~~v~iiG~G~~Gl~aA~~l~~-~g~~v~v~E~~~~~   48 (504)
T 1sez_A           11 SSAKRVAVIGAGVSGLAAAYKLKI-HGLNVTVFEAEGKA   48 (504)
T ss_dssp             --CCEEEEECCSHHHHHHHHHHHT-TSCEEEEECSSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHH-CCCcEEEEEeCCCC
Confidence            346899999999999999999999 59999999998764

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=97.37  E-value=9.7e-05  Score=69.95  Aligned_cols=34  Identities=18%  Similarity=0.234  Sum_probs=31.5

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      .+|+||||+|++|+++|..|++ .+.+|+|||+..
T Consensus        22 ~~~ViIVGaGpaGl~~A~~La~-~G~~V~viE~~~   55 (430)
T 3ihm_A           22 KKRIGIVGAGTAGLHLGLFLRQ-HDVDVTVYTDRK   55 (430)
T ss_dssp             -CEEEEECCHHHHHHHHHHHHH-TTCEEEEEESCC
T ss_pred             CCCEEEECCcHHHHHHHHHHHH-CCCeEEEEcCCC
Confidence            4799999999999999999999 599999999886

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=97.36  E-value=0.00012  Score=70.66  Aligned_cols=34  Identities=32%  Similarity=0.438  Sum_probs=31.7

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      .||+||||+|++|+++|.+|++ .+.+|+|||++.
T Consensus         8 ~~DvvVIGgG~aGl~aA~~la~-~G~~V~liE~~~   41 (492)
T 3ic9_A            8 NVDVAIIGTGTAGMGAYRAAKK-HTDKVVLIEGGA   41 (492)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHT-TCSCEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHh-CCCcEEEEeCCC
Confidence            5999999999999999999999 599999999875

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=97.36  E-value=0.00015  Score=68.13  Aligned_cols=35  Identities=26%  Similarity=0.454  Sum_probs=32.6

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      ...+|++|||+|++|+++|.+|.+ .+.+|+|+|+.
T Consensus        42 ~~~~~V~IIGAGiaGL~aA~~L~~-~G~~V~VlE~~   76 (376)
T 2e1m_A           42 GPPKRILIVGAGIAGLVAGDLLTR-AGHDVTILEAN   76 (376)
T ss_dssp             CSCCEEEEECCBHHHHHHHHHHHH-TSCEEEEECSC
T ss_pred             CCCceEEEECCCHHHHHHHHHHHH-CCCcEEEEecc
Confidence            456899999999999999999999 59999999998

>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*

Probab=97.34  E-value=0.00013  Score=70.95  Aligned_cols=36  Identities=31%  Similarity=0.464  Sum_probs=32.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhc---CCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSE---NPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~---~~~~~vl~lE~G~~   89 (284)
                      ..+||||||+|++|+++|..|++   . +.+|+|||+...
T Consensus         4 ~~~dVvIVGgG~aGl~aA~~La~~~~~-G~~V~liE~~~~   42 (538)
T 2aqj_A            4 PIKNIVIVGGGTAGWMAASYLVRALQQ-QANITLIESAAI   42 (538)
T ss_dssp             BCCEEEEECCSHHHHHHHHHHHHHCCS-SCEEEEEECSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhcCC-CCEEEEECCCCC
Confidence            35899999999999999999998   5 899999999653

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=97.34  E-value=0.00015  Score=65.99  Aligned_cols=35  Identities=31%  Similarity=0.455  Sum_probs=31.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCC-eEEEeccCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKW-KVLLLESGE   88 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~-~vl~lE~G~   88 (284)
                      .++|++|||+|++|+.+|.+|++ .+. +|+|||+..
T Consensus         3 ~~~~vvIIGaG~aGl~aA~~l~~-~g~~~v~lie~~~   38 (369)
T 3d1c_A            3 QHHKVAIIGAGAAGIGMAITLKD-FGITDVIILEKGT   38 (369)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHH-TTCCCEEEECSSS
T ss_pred             ccCcEEEECcCHHHHHHHHHHHH-cCCCcEEEEecCC
Confidence            35899999999999999999999 488 999999985

>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}

Probab=97.33  E-value=0.00011  Score=74.05  Aligned_cols=37  Identities=27%  Similarity=0.482  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcC-----CCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSEN-----PKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~-----~~~~vl~lE~G~~   89 (284)
                      .++||||||+|.+|+.+|..|++.     ++.+|+|||++..
T Consensus        21 ~~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~   62 (662)
T 3gyx_A           21 HSVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASL   62 (662)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCT
T ss_pred             EEcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCC
Confidence            369999999999999999999983     2899999998753

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=97.33  E-value=0.00014  Score=71.15  Aligned_cols=37  Identities=30%  Similarity=0.430  Sum_probs=33.6

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++||||||+|++|+++|..|++ .+.+|+|||+.+..
T Consensus        25 ~~~dVlIVGaGpaGl~~A~~La~-~G~~V~vlEr~~~~   61 (549)
T 2r0c_A           25 IETDVLILGGGPVGMALALDLAH-RQVGHLVVEQTDGT   61 (549)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSCSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH-CCCCEEEEeCCCCC
Confidence            46899999999999999999999 59999999998654

>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*

Probab=97.33  E-value=0.00013  Score=74.79  Aligned_cols=36  Identities=33%  Similarity=0.610  Sum_probs=32.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCC-eEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKW-KVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~-~vl~lE~G~~   89 (284)
                      .++|+||||+|.+|+++|..|++ .+. +|+|||++..
T Consensus         3 ~~~dVvIIGgGi~Gls~A~~La~-~G~~~V~vlE~~~~   39 (830)
T 1pj5_A            3 STPRIVIIGAGIVGTNLADELVT-RGWNNITVLDQGPL   39 (830)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHH-TTCCCEEEECSSCT
T ss_pred             CCCCEEEECcCHHHHHHHHHHHh-CCCCcEEEEeCCCC
Confidence            46899999999999999999999 487 9999999864

>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*

Probab=97.33  E-value=0.00017  Score=71.89  Aligned_cols=38  Identities=26%  Similarity=0.427  Sum_probs=34.1

Q ss_pred             CCcccEEEECCChHHHHHHHHHhc-CCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSE-NPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~-~~~~~vl~lE~G~~~   90 (284)
                      ..++||||||+|++|+++|..|++ . +.+|+|||+.+..
T Consensus        30 ~~~~dVlIVGaGpaGL~~A~~La~~~-G~~V~viEr~~~~   68 (639)
T 2dkh_A           30 PSQVDVLIVGCGPAGLTLAAQLAAFP-DIRTCIVEQKEGP   68 (639)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHTTCT-TSCEEEECSSSSC
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHHhC-CCCEEEEeCCCCC
Confidence            457999999999999999999998 6 8999999997643

>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*

Probab=97.32  E-value=0.00013  Score=72.98  Aligned_cols=35  Identities=29%  Similarity=0.392  Sum_probs=32.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      .+||+||||+|++|+.+|..|++ .+.+|+|||.+.
T Consensus        26 ~~yDVIVIGgG~AGl~AAlalAr-~G~kVlLIEk~~   60 (637)
T 2zxi_A           26 DEFDVVVIGGGHAGIEAALAAAR-MGAKTAMFVLNA   60 (637)
T ss_dssp             GCCSEEEECCSHHHHHHHHHHHH-TTCCEEEEESCG
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH-CCCCEEEEEecc
Confidence            46999999999999999999999 599999999874

>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*

Probab=97.32  E-value=0.00015  Score=72.62  Aligned_cols=37  Identities=35%  Similarity=0.438  Sum_probs=32.6

Q ss_pred             CcccEEEECCChHHHHHHHHHh---cCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLS---ENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~---~~~~~~vl~lE~G~~   89 (284)
                      .++||||||+|.+|+++|..|+   +..+.+|+|||++..
T Consensus        21 ~~~DVvVIG~G~AGl~AAl~aa~~~~~~G~~V~vlEK~~~   60 (643)
T 1jnr_A           21 VETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAV   60 (643)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCT
T ss_pred             ccCCEEEECcCHHHHHHHHHHhhhhhhCCCeEEEEeCcCC
Confidence            4699999999999999999999   424899999999864

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=97.32  E-value=0.00015  Score=64.49  Aligned_cols=32  Identities=31%  Similarity=0.454  Sum_probs=30.2

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCC-eEEEeccC
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKW-KVLLLESG   87 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~-~vl~lE~G   87 (284)
                      ||++|||+|++|+.+|..|++ .+. +|+|||+.
T Consensus         2 ~dvvIIG~G~aGl~aA~~l~~-~g~~~v~lie~~   34 (311)
T 2q0l_A            2 IDCAIIGGGPAGLSAGLYATR-GGVKNAVLFEKG   34 (311)
T ss_dssp             EEEEEECCSHHHHHHHHHHHH-TTCSSEEEECSS
T ss_pred             ceEEEECccHHHHHHHHHHHH-CCCCcEEEEcCC
Confidence            799999999999999999999 589 99999985

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=97.32  E-value=0.00014  Score=67.19  Aligned_cols=38  Identities=32%  Similarity=0.514  Sum_probs=32.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~   90 (284)
                      .++|++|||+|++|+.+|..|++. ++.+|+|+|++...
T Consensus        64 ~~~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~  102 (326)
T 2gjc_A           64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP  102 (326)
T ss_dssp             TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             CcCCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccc
Confidence            357999999999999999999983 38999999997644

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=97.31  E-value=0.00013  Score=69.17  Aligned_cols=35  Identities=34%  Similarity=0.537  Sum_probs=31.8

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCC--CeEEEeccCCc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPK--WKVLLLESGED   89 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~--~~vl~lE~G~~   89 (284)
                      .+|+||||+|.+|+++|.+|++. +  .+|+|||+...
T Consensus         4 ~~~v~IiGaG~~Gl~~A~~L~~~-g~~~~v~v~E~~~~   40 (475)
T 3lov_A            4 SKRLVIVGGGITGLAAAYYAERA-FPDLNITLLEAGER   40 (475)
T ss_dssp             SCEEEEECCBHHHHHHHHHHHHH-CTTSEEEEECSSSS
T ss_pred             cccEEEECCCHHHHHHHHHHHHh-CCCCCEEEEECCCC
Confidence            58999999999999999999994 7  99999999654

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=97.30  E-value=0.00016  Score=69.58  Aligned_cols=34  Identities=29%  Similarity=0.536  Sum_probs=31.4

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEecc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLES   86 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~   86 (284)
                      ..+||+||||+|++|+++|.+|++ .+.+|+|||+
T Consensus         4 ~~~~DvvVIG~G~aGl~aA~~la~-~G~~V~liEk   37 (488)
T 3dgz_A            4 QQSFDLLVIGGGSGGLACAKEAAQ-LGKKVAVADY   37 (488)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHh-CCCeEEEEEe
Confidence            356999999999999999999999 5999999997

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=97.30  E-value=0.00017  Score=69.05  Aligned_cols=35  Identities=37%  Similarity=0.629  Sum_probs=32.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ..+|+||||+|++|+.+|.+|++ .+.+|+|+|++.
T Consensus         3 ~~~dVvIIGgG~aGl~aA~~l~~-~g~~V~liE~~~   37 (463)
T 2r9z_A            3 QHFDLIAIGGGSGGLAVAEKAAA-FGKRVALIESKA   37 (463)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred             ccCcEEEECCCHHHHHHHHHHHh-CCCcEEEEcCCC
Confidence            46999999999999999999999 699999999874

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=97.30  E-value=0.00016  Score=68.79  Aligned_cols=35  Identities=40%  Similarity=0.652  Sum_probs=32.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ..+|++|||+|++|+.+|.+|++ .+.+|+|+|++.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~-~g~~V~liE~~~   37 (450)
T 1ges_A            3 KHYDYIAIGGGSGGIASINRAAM-YGQKCALIEAKE   37 (450)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHT-TTCCEEEEESSC
T ss_pred             ccCCEEEECCCHHHHHHHHHHHh-CCCeEEEEcCCC
Confidence            46999999999999999999999 699999999874

>4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum}

Probab=97.29  E-value=0.00016  Score=71.10  Aligned_cols=34  Identities=38%  Similarity=0.708  Sum_probs=31.2

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      +||+||||+|++|.++|.++++ .+.+|+|||...
T Consensus        42 dYDviVIG~GpaG~~aA~~aa~-~G~kValIE~~~   75 (542)
T 4b1b_A           42 DYDYVVIGGGPGGMASAKEAAA-HGARVLLFDYVK   75 (542)
T ss_dssp             SEEEEEECCSHHHHHHHHHHHT-TTCCEEEECCCC
T ss_pred             CCCEEEECCCHHHHHHHHHHHH-CCCeEEEEeccc
Confidence            4999999999999999999999 599999999643

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=97.29  E-value=0.00023  Score=69.15  Aligned_cols=37  Identities=27%  Similarity=0.382  Sum_probs=34.1

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ....+|+||||+|++|+.+|.+|++ .+.+|+|||++.
T Consensus        40 ~~~~~dVvIIGgG~aGl~aA~~l~~-~G~~V~liE~~~   76 (523)
T 1mo9_A           40 DPREYDAIFIGGGAAGRFGSAYLRA-MGGRQLIVDRWP   76 (523)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHH-TTCCEEEEESSS
T ss_pred             CCCcCCEEEECCCHHHHHHHHHHHH-CCCCEEEEeCCC
Confidence            4567999999999999999999999 499999999987

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=97.28  E-value=0.00018  Score=68.93  Aligned_cols=34  Identities=29%  Similarity=0.468  Sum_probs=31.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEecc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLES   86 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~   86 (284)
                      ..+||+||||+|++|+++|.+|++ .+.+|+|||+
T Consensus         7 ~~~~DvvVIGgG~aGl~aA~~la~-~G~~V~liEk   40 (483)
T 3dgh_A            7 SYDYDLIVIGGGSAGLACAKEAVL-NGARVACLDF   40 (483)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHH-TTCCEEEECC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHH-CCCEEEEEEe
Confidence            356999999999999999999999 5999999994

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=97.28  E-value=0.0002  Score=69.29  Aligned_cols=37  Identities=22%  Similarity=0.266  Sum_probs=33.6

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ...+|++|||+|++|+.+|..|++ .+.+|+|||+.+.
T Consensus        90 ~~~~dVvIVGgG~aGl~aA~~La~-~G~~V~liEk~~~  126 (497)
T 2bry_A           90 CTNTKCLVVGAGPCGLRAAVELAL-LGARVVLVEKRIK  126 (497)
T ss_dssp             TTTCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESCSS
T ss_pred             cCCCCEEEECccHHHHHHHHHHHH-CCCeEEEEEeccc
Confidence            456899999999999999999999 5999999999864

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=97.28  E-value=0.0002  Score=69.63  Aligned_cols=37  Identities=35%  Similarity=0.555  Sum_probs=32.9

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ....||+||||+|++|+++|.+|++ .+.+|+|||+.+
T Consensus        29 ~~~~~DVvVIGgGpaGl~aA~~la~-~G~~V~liEk~~   65 (519)
T 3qfa_A           29 KSYDYDLIIIGGGSGGLAAAKEAAQ-YGKKVMVLDFVT   65 (519)
T ss_dssp             SSCSEEEEEECCSHHHHHHHHHHHH-TTCCEEEECCCC
T ss_pred             cCCCCCEEEECCCHHHHHHHHHHHh-CCCeEEEEeccC
Confidence            3457999999999999999999999 599999999843

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=97.28  E-value=0.00018  Score=68.87  Aligned_cols=36  Identities=36%  Similarity=0.679  Sum_probs=32.6

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ...||+||||+|++|+.+|.+|++ .+.+|+|||++.
T Consensus        18 ~~~~dVvIIGgG~aGl~aA~~la~-~G~~V~liE~~~   53 (478)
T 3dk9_A           18 VASYDYLVIGGGSGGLASARRAAE-LGARAAVVESHK   53 (478)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHh-CCCeEEEEecCC
Confidence            346999999999999999999999 599999999764

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=97.26  E-value=0.00021  Score=65.63  Aligned_cols=34  Identities=32%  Similarity=0.529  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .|+|||+|++|+++|..|++ .+.+|+|+|+.+..
T Consensus         3 ~V~IVGaGpaGl~~A~~L~~-~G~~v~v~Er~~~~   36 (412)
T 4hb9_A            3 HVGIIGAGIGGTCLAHGLRK-HGIKVTIYERNSAA   36 (412)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSCSS
T ss_pred             EEEEECcCHHHHHHHHHHHh-CCCCEEEEecCCCC
Confidence            68999999999999999999 59999999987643

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=97.26  E-value=0.00016  Score=66.99  Aligned_cols=35  Identities=29%  Similarity=0.717  Sum_probs=31.3

Q ss_pred             cEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~   90 (284)
                      |+||||+|++|+++|..|++. ++.+|+|||+.+..
T Consensus         2 dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            2 KILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             eEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            899999999999999999983 38999999998654

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=97.26  E-value=0.00018  Score=68.96  Aligned_cols=36  Identities=39%  Similarity=0.668  Sum_probs=32.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ..++|+||||+|++|+.+|.+|++ .+.+|+|||++.
T Consensus         9 ~~~~dVvVIGgG~aGl~aA~~l~~-~g~~V~liE~~~   44 (479)
T 2hqm_A            9 TKHYDYLVIGGGSGGVASARRAAS-YGAKTLLVEAKA   44 (479)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHH-TSCCEEEEESSC
T ss_pred             cccCCEEEEcCCHHHHHHHHHHHH-CCCcEEEEeCCC
Confidence            356999999999999999999999 599999999874

>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*

Probab=97.26  E-value=0.00015  Score=72.12  Aligned_cols=36  Identities=22%  Similarity=0.258  Sum_probs=32.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCC--CeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPK--WKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~--~~vl~lE~G~~   89 (284)
                      .++||||||+|++|+++|..|++ .+  .+|+|||++..
T Consensus         4 ~~~DVvIVG~G~AGl~aAl~la~-~G~~~~V~vlEk~~~   41 (602)
T 1kf6_A            4 FQADLAIVGAGGAGLRAAIAAAQ-ANPNAKIALISKVYP   41 (602)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH-HCTTCCEEEEESSCG
T ss_pred             ccCCEEEECCCHHHHHHHHHHHh-cCCCCcEEEEeCCCC
Confidence            35899999999999999999999 47  99999999754

>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*

Probab=97.25  E-value=0.00011  Score=70.71  Aligned_cols=34  Identities=38%  Similarity=0.608  Sum_probs=29.6

Q ss_pred             ccEEEECCChHHHHHHHHHhc---CCCCeEEEeccCCc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSE---NPKWKVLLLESGED   89 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~---~~~~~vl~lE~G~~   89 (284)
                      +||||||+|++|+++|..|++   . +.+|+|||+...
T Consensus         3 ~dVvIVGgG~aGl~~A~~La~~~~~-G~~V~lvE~~~~   39 (511)
T 2weu_A            3 RSVVIVGGGTAGWMTASYLKAAFDD-RIDVTLVESGNV   39 (511)
T ss_dssp             CEEEEECCHHHHHHHHHHHHHHHGG-GSEEEEEEC---
T ss_pred             ceEEEECCCHHHHHHHHHHHhhcCC-CCEEEEEecCCC
Confidence            799999999999999999998   5 899999999753

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=97.25  E-value=0.0002  Score=63.62  Aligned_cols=32  Identities=25%  Similarity=0.417  Sum_probs=29.7

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEecc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLES   86 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~   86 (284)
                      +||++|||+|++|+.+|..|++ .+.+|+|||.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~-~g~~v~li~~   32 (310)
T 1fl2_A            1 AYDVLIVGSGPAGAAAAIYSAR-KGIRTGLMGE   32 (310)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHT-TTCCEEEECS
T ss_pred             CCCEEEECcCHHHHHHHHHHHH-CCCcEEEEeC
Confidence            4899999999999999999999 5999999986

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=97.24  E-value=0.00015  Score=64.62  Aligned_cols=34  Identities=18%  Similarity=0.305  Sum_probs=31.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      ..+|++|||+|++|+++|..|++ .+.+|+|||+.
T Consensus         4 ~~~~vvIIG~G~aGl~aA~~l~~-~g~~v~lie~~   37 (320)
T 1trb_A            4 KHSKLLILGSGPAGYTAAVYAAR-ANLQPVLITGM   37 (320)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHT-TTCCCEEECCS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH-CCCcEEEEccC
Confidence            45899999999999999999999 58999999964

>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}

Probab=97.24  E-value=0.00019  Score=68.96  Aligned_cols=31  Identities=29%  Similarity=0.374  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      |+||||+|++|+++|..|++ .+.+|+|||++
T Consensus         1 DVvVIG~G~AGl~aA~~la~-~G~~V~viek~   31 (472)
T 2e5v_A            1 MIYIIGSGIAGLSAGVALRR-AGKKVTLISKR   31 (472)
T ss_dssp             CEEEECCSHHHHHHHHHHHH-TTCCEEEECSS
T ss_pred             CEEEECCCHHHHHHHHHHHH-CCCCEEEEeCC
Confidence            89999999999999999998 59999999998

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=97.24  E-value=0.0002  Score=68.04  Aligned_cols=35  Identities=37%  Similarity=0.564  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      +||++|||+|++|+.+|.+|++ .+.+|+|||+++.
T Consensus         1 ~~dvvIIG~G~aGl~aA~~l~~-~g~~V~lie~~~~   35 (455)
T 2yqu_A            1 MYDLLVIGAGPGGYVAAIRAAQ-LGMKVGVVEKEKA   35 (455)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSSS
T ss_pred             CCCEEEECCChhHHHHHHHHHH-CCCeEEEEeCCCC
Confidence            3899999999999999999999 4999999999853

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.24  E-value=0.00022  Score=68.89  Aligned_cols=34  Identities=41%  Similarity=0.717  Sum_probs=31.8

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      +||+||||+|++|+.+|.+|++ .+.+|+|+|++.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~-~g~~V~liE~~~   35 (500)
T 1onf_A            2 VYDLIVIGGGSGGMAAARRAAR-HNAKVALVEKSR   35 (500)
T ss_dssp             CBSEEEECCSHHHHHHHHHHHH-TTCCEEEEESSS
T ss_pred             ccCEEEECCCHHHHHHHHHHHH-CCCcEEEEeCCC
Confidence            4899999999999999999999 599999999985

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=97.23  E-value=0.00023  Score=67.81  Aligned_cols=35  Identities=26%  Similarity=0.344  Sum_probs=32.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ..+|++|||+|++|+.+|.+|++ .+.+|+|||++.
T Consensus         3 ~~~dvvIIGgG~aGl~aA~~l~~-~g~~V~lie~~~   37 (467)
T 1zk7_A            3 PPVQVAVIGSGGAAMAAALKAVE-QGAQVTLIERGT   37 (467)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH-CCCEEEEEeCCC
Confidence            46899999999999999999999 589999999883

>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}

Probab=97.23  E-value=0.0002  Score=71.82  Aligned_cols=36  Identities=25%  Similarity=0.410  Sum_probs=32.4

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ...||+||||+|.+|+.+|..|++ .+.+|+|||...
T Consensus        19 ~~~yDVIVIGgG~AGl~AAlaLAr-~G~kVlLIEk~~   54 (641)
T 3cp8_A           19 SHMYDVIVVGAGHAGCEAALAVAR-GGLHCLLITSDL   54 (641)
T ss_dssp             -CCEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESCG
T ss_pred             cCcCCEEEECccHHHHHHHHHHHH-CCCcEEEEEecc
Confidence            346999999999999999999999 599999999874

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=97.22  E-value=0.00026  Score=66.24  Aligned_cols=36  Identities=22%  Similarity=0.522  Sum_probs=32.7

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ++|++|||+|.+|+++|.+|++ .+.+|+|+|+....
T Consensus         3 ~~~v~iiG~G~~Gl~~A~~l~~-~g~~v~v~E~~~~~   38 (384)
T 2bi7_A            3 SKKILIVGAGFSGAVIGRQLAE-KGHQVHIIDQRDHI   38 (384)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHT-TTCEEEEEESSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHH-CCCcEEEEEecCCc
Confidence            4799999999999999999999 48999999997654

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=97.22  E-value=0.00025  Score=69.23  Aligned_cols=37  Identities=30%  Similarity=0.461  Sum_probs=33.7

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ...+|++|||+|++|+.+|.+|.+ .+.+|+|||+++.
T Consensus        14 ~~~~dVvIIGaG~aGl~aA~~L~~-~G~~v~iiE~~~~   50 (542)
T 1w4x_A           14 PEEVDVLVVGAGFSGLYALYRLRE-LGRSVHVIETAGD   50 (542)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHh-CCCCEEEEeCCCC
Confidence            457999999999999999999999 4999999999864

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=97.22  E-value=0.00023  Score=67.89  Aligned_cols=35  Identities=34%  Similarity=0.548  Sum_probs=32.3

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ++|++|||+|++|+.+|.+|++ .+.+|+|||+++.
T Consensus         2 ~~dvvIIGgG~aGl~aA~~l~~-~g~~V~lie~~~~   36 (468)
T 2qae_A            2 PYDVVVIGGGPGGYVASIKAAQ-LGMKTACVEKRGA   36 (468)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSSS
T ss_pred             CCCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence            5899999999999999999999 5999999999853

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=97.21  E-value=0.00021  Score=68.55  Aligned_cols=37  Identities=35%  Similarity=0.547  Sum_probs=32.9

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ..++|+||||+|++|+.+|.+|++ .+.+|+|||+.+.
T Consensus         4 ~~~~dVvIIGaG~aGl~aA~~l~~-~G~~V~liE~~~~   40 (482)
T 1ojt_A            4 DAEYDVVVLGGGPGGYSAAFAAAD-EGLKVAIVERYKT   40 (482)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSSC
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHh-CCCeEEEEeCCCC
Confidence            346999999999999999999999 5999999999543

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=97.20  E-value=0.00016  Score=68.56  Aligned_cols=36  Identities=28%  Similarity=0.341  Sum_probs=33.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCC-----CeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPK-----WKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~-----~~vl~lE~G~~   89 (284)
                      ..+|+||||+|++|+.+|..|++. +     .+|+|||+.+.
T Consensus        29 ~~~dVvIIGaG~aGl~aA~~L~~~-g~~~~~~~v~liE~~~~   69 (463)
T 3s5w_A           29 VVHDLIGVGFGPSNIALAIALQER-AQAQGALEVLFLDKQGD   69 (463)
T ss_dssp             CEESEEEECCSHHHHHHHHHHHHH-HHHHCCCCEEEEESCSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHhc-ccccCcccEEEEecCCC
Confidence            579999999999999999999984 6     89999999874

>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A

Probab=97.20  E-value=0.00024  Score=69.50  Aligned_cols=37  Identities=24%  Similarity=0.383  Sum_probs=32.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcC--CCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSEN--PKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~--~~~~vl~lE~G~~   89 (284)
                      ..+||||||+|++|+++|..|++.  .+.+|+|||+...
T Consensus        24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~   62 (550)
T 2e4g_A           24 KIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDI   62 (550)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCC
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCC
Confidence            468999999999999999999982  3899999999654

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=97.19  E-value=0.00032  Score=66.52  Aligned_cols=37  Identities=32%  Similarity=0.376  Sum_probs=32.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCC--eEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKW--KVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~--~vl~lE~G~~~   90 (284)
                      ..+|++|||+|++|+++|..|++ .+.  +|+|+|+....
T Consensus         5 ~~~dV~IIGaG~aGl~aA~~L~~-~G~~~~V~v~E~~~~~   43 (447)
T 2gv8_A            5 TIRKIAIIGAGPSGLVTAKALLA-EKAFDQVTLFERRGSP   43 (447)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHT-TTCCSEEEEECSSSSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHh-cCCCCCeEEEecCCCC
Confidence            45899999999999999999999 488  99999987543

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=97.19  E-value=0.00018  Score=63.68  Aligned_cols=34  Identities=29%  Similarity=0.433  Sum_probs=31.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEE-eccC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLL-LESG   87 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~-lE~G   87 (284)
                      ..+|++|||+|++|+.+|..|++ .+.+|+| +|+.
T Consensus         3 ~~~~vvIIG~G~aGl~aA~~l~~-~g~~v~li~e~~   37 (315)
T 3r9u_A            3 AMLDVAIIGGGPAGLSAGLYATR-GGLKNVVMFEKG   37 (315)
T ss_dssp             SCEEEEEECCSHHHHHHHHHHHH-HTCSCEEEECSS
T ss_pred             CCceEEEECCCHHHHHHHHHHHH-CCCCeEEEEeCC
Confidence            56999999999999999999999 5899999 9983

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=97.18  E-value=0.00026  Score=67.63  Aligned_cols=35  Identities=31%  Similarity=0.448  Sum_probs=32.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      .++|++|||+|++|+++|.+|++ .+.+|+|||+.+
T Consensus         4 ~~~dVvIIGgG~aGl~aA~~l~~-~G~~V~liE~~~   38 (478)
T 1v59_A            4 KSHDVVIIGGGPAGYVAAIKAAQ-LGFNTACVEKRG   38 (478)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH-CCCeEEEEecCC
Confidence            36999999999999999999999 489999999954

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=97.17  E-value=0.00024  Score=67.80  Aligned_cols=37  Identities=30%  Similarity=0.478  Sum_probs=33.3

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      +.++|++|||+|++|+.+|.+|++ .+.+|+|||+.+.
T Consensus         4 ~~~~dvvIIGgG~aGl~aA~~l~~-~g~~V~liE~~~~   40 (474)
T 1zmd_A            4 PIDADVTVIGSGPGGYVAAIKAAQ-LGFKTVCIEKNET   40 (474)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEECSSS
T ss_pred             CCCCCEEEECCCHHHHHHHHHHHh-CCCeEEEEeCCCC
Confidence            346999999999999999999999 4999999999863

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=97.17  E-value=0.00022  Score=64.05  Aligned_cols=33  Identities=24%  Similarity=0.351  Sum_probs=30.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEecc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLES   86 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~   86 (284)
                      ..+|++|||+|++|+.+|..|++ .+.+|+|||+
T Consensus         7 ~~~~vvIIG~G~aGl~~A~~l~~-~g~~v~lie~   39 (333)
T 1vdc_A            7 HNTRLCIVGSGPAAHTAAIYAAR-AELKPLLFEG   39 (333)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH-TTCCCEEECC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHH-CCCeEEEEec
Confidence            45899999999999999999999 5999999998

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.16  E-value=0.00025  Score=67.54  Aligned_cols=37  Identities=38%  Similarity=0.528  Sum_probs=33.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ...+|++|||+|++|+.+|.+|++ .+.+|+|||+.+.
T Consensus         4 ~~~~dvvIIGaG~aGl~aA~~l~~-~g~~V~liE~~~~   40 (470)
T 1dxl_A            4 SDENDVVIIGGGPGGYVAAIKAAQ-LGFKTTCIEKRGA   40 (470)
T ss_dssp             CCCCCEEEECCSHHHHHHHHHHHH-HTCCEEEEECSSS
T ss_pred             CccCCEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence            346999999999999999999999 4899999999853

>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}

Probab=97.16  E-value=0.00023  Score=69.06  Aligned_cols=37  Identities=32%  Similarity=0.600  Sum_probs=32.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcC-----------CCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSEN-----------PKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~-----------~~~~vl~lE~G~~   89 (284)
                      ..+||||||+|++|+++|..|++.           .+.+|+|||+...
T Consensus         6 ~~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~   53 (526)
T 2pyx_A            6 PITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDV   53 (526)
T ss_dssp             CCCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCC
Confidence            358999999999999999999981           4899999998653

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=97.15  E-value=0.00024  Score=64.25  Aligned_cols=35  Identities=23%  Similarity=0.329  Sum_probs=31.8

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      ...+|++|||+|++|+.+|..|++ .+.+|+|||+.
T Consensus        12 ~~~~~vvIIG~G~aGl~aA~~l~~-~g~~v~lie~~   46 (335)
T 2a87_A           12 HPVRDVIVIGSGPAGYTAALYAAR-AQLAPLVFEGT   46 (335)
T ss_dssp             CCCEEEEEECCHHHHHHHHHHHHH-TTCCCEEECCS
T ss_pred             CCcCCEEEECCCHHHHHHHHHHHh-CCCeEEEEecC
Confidence            456999999999999999999999 59999999964

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=97.14  E-value=0.00029  Score=67.30  Aligned_cols=37  Identities=30%  Similarity=0.431  Sum_probs=33.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..+|++|||+|.+|+.+|..|++ .+.+|+|||+....
T Consensus        32 ~~~~v~IiGaG~~Gl~aA~~l~~-~g~~v~vlE~~~~~   68 (498)
T 2iid_A           32 NPKHVVIVGAGMAGLSAAYVLAG-AGHQVTVLEASERP   68 (498)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHH-HTCEEEEECSSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHh-CCCeEEEEECCCCC
Confidence            45899999999999999999999 59999999997644

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=97.13  E-value=0.00029  Score=66.92  Aligned_cols=33  Identities=36%  Similarity=0.575  Sum_probs=31.2

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      +||+||||+|++|+.+|.+|++ .+.+|+|||+.
T Consensus         3 ~~dvvIIGgG~aGl~aA~~l~~-~g~~V~lie~~   35 (455)
T 1ebd_A            3 ETETLVVGAGPGGYVAAIRAAQ-LGQKVTIVEKG   35 (455)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHH-TTCCEEEEESS
T ss_pred             cCCEEEECCCHHHHHHHHHHHh-CCCeEEEEECC
Confidence            5899999999999999999999 49999999987

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=97.13  E-value=0.00029  Score=67.09  Aligned_cols=33  Identities=33%  Similarity=0.578  Sum_probs=31.2

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      ++|++|||+|++|+.+|.+|++ .+.+|+|||+.
T Consensus         3 ~~dvvIIGaG~aGl~aA~~l~~-~G~~V~liE~~   35 (464)
T 2a8x_A            3 HYDVVVLGAGPGGYVAAIRAAQ-LGLSTAIVEPK   35 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSS
T ss_pred             cCCEEEECCCHHHHHHHHHHHh-CCCeEEEEeCC
Confidence            5899999999999999999999 49999999987

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=97.10  E-value=0.00039  Score=66.98  Aligned_cols=37  Identities=32%  Similarity=0.296  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCC-CeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPK-WKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~-~~vl~lE~G~~~   90 (284)
                      ..+|++|||+|++|+++|.+|++. + .+|+|+|+.+..
T Consensus         8 ~~~~v~iiG~G~~Gl~~A~~l~~~-g~~~v~v~E~~~~~   45 (484)
T 4dsg_A            8 LTPKIVIIGAGPTGLGAAVRLTEL-GYKNWHLYECNDTP   45 (484)
T ss_dssp             CSCCEEEECCSHHHHHHHHHHHHT-TCCSEEEEESSSSS
T ss_pred             cCCCEEEECcCHHHHHHHHHHHHc-CCCCEEEEeCCCCC
Confidence            468999999999999999999995 6 799999998754

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=97.09  E-value=0.00024  Score=68.48  Aligned_cols=35  Identities=26%  Similarity=0.393  Sum_probs=31.5

Q ss_pred             cccEEEECCChHHHHHHHHHhcC-C-CCeEEEeccCC
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSEN-P-KWKVLLLESGE   88 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~-~-~~~vl~lE~G~   88 (284)
                      .+|+||||+|++|+++|.+|++. + +.+|+|||++.
T Consensus         2 ~~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~   38 (499)
T 1xdi_A            2 VTRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   38 (499)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             CCCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC
Confidence            48999999999999999999983 2 88999999985

>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*

Probab=97.08  E-value=0.00036  Score=70.07  Aligned_cols=36  Identities=31%  Similarity=0.480  Sum_probs=32.8

Q ss_pred             cccEEEECCChHHHHHHHHHhc-----CCCCeEEEeccCCcc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSE-----NPKWKVLLLESGEDE   90 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~-----~~~~~vl~lE~G~~~   90 (284)
                      ++||+|||+|++|+++|..|++     . +++|+|||+.+..
T Consensus         8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~-Gi~v~viE~~~~~   48 (665)
T 1pn0_A            8 YCDVLIVGAGPAGLMAARVLSEYVRQKP-DLKVRIIDKRSTK   48 (665)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHHHHHHST-TCCEEEECSSSSC
T ss_pred             CCcEEEECcCHHHHHHHHHHhccccccC-CCCEEEEeCCCCC
Confidence            6899999999999999999998     5 9999999987643

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=97.06  E-value=0.00047  Score=69.18  Aligned_cols=40  Identities=28%  Similarity=0.448  Sum_probs=36.2

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCccc
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDEN   91 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~   91 (284)
                      ++.+|||||||+|..|+++|..|++ .+++||+||+..+..
T Consensus         5 ~~~~~D~~i~GtGl~~~~~a~~~~~-~g~~vl~id~~~~~g   44 (650)
T 1vg0_A            5 LPSDFDVIVIGTGLPESIIAAACSR-SGQRVLHVDSRSYYG   44 (650)
T ss_dssp             CCSBCSEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSSC
T ss_pred             CCCcCCEEEECCcHHHHHHHHHHHh-CCCEEEEEcCCCccc
Confidence            3557999999999999999999999 599999999998763

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=97.06  E-value=0.00034  Score=67.38  Aligned_cols=32  Identities=31%  Similarity=0.596  Sum_probs=29.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhc-CCCCeEEEec
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSE-NPKWKVLLLE   85 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~-~~~~~vl~lE   85 (284)
                      .+||++|||+|++|+++|.+|++ . +.+|+|||
T Consensus         2 ~~~dvvVIGgG~aGl~aA~~la~~~-G~~V~liE   34 (490)
T 1fec_A            2 RAYDLVVIGAGSGGLEAGWNAASLH-KKRVAVID   34 (490)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHH-CCCEEEEE
T ss_pred             ccccEEEECCCHHHHHHHHHHHHHc-CCEEEEEe
Confidence            35999999999999999999998 6 89999999

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=97.05  E-value=0.00039  Score=66.42  Aligned_cols=34  Identities=44%  Similarity=0.708  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ++|+||||+|++|+.+|.+|++ .+.+|+|||++.
T Consensus         6 ~~dvvIIG~G~aG~~aA~~l~~-~g~~V~lie~~~   39 (464)
T 2eq6_A            6 TYDLIVIGTGPGGYHAAIRAAQ-LGLKVLAVEAGE   39 (464)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred             cCCEEEECcCHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence            6999999999999999999999 589999999875

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=97.04  E-value=0.00046  Score=67.71  Aligned_cols=37  Identities=41%  Similarity=0.530  Sum_probs=33.4

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ...+|+||||+|++|+.+|.+|.+ .+.+|+|||+++.
T Consensus         7 ~~~~dVvIIGaG~aGl~aA~~L~~-~g~~v~iiE~~~~   43 (545)
T 3uox_A            7 SPALDAVVIGAGVTGIYQAFLINQ-AGMKVLGIEAGED   43 (545)
T ss_dssp             CCSEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             CCCCCEEEECccHHHHHHHHHHHh-CCCCEEEEeCCCC
Confidence            346999999999999999999999 6999999999864

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=97.04  E-value=0.00042  Score=65.95  Aligned_cols=37  Identities=30%  Similarity=0.505  Sum_probs=32.0

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCC-eEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKW-KVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~-~vl~lE~G~~~   90 (284)
                      ..+|++|||+|++|+++|.+|++ .+. +|+|+|++...
T Consensus         3 ~~~~~~iiG~G~~g~~~a~~l~~-~g~~~v~~~e~~~~~   40 (472)
T 1b37_A            3 VGPRVIVVGAGMSGISAAKRLSE-AGITDLLILEATDHI   40 (472)
T ss_dssp             --CCEEEECCBHHHHHHHHHHHH-TTCCCEEEECSSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHh-cCCCceEEEeCCCCC
Confidence            45899999999999999999999 487 89999998654

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=97.02  E-value=0.00044  Score=67.77  Aligned_cols=36  Identities=25%  Similarity=0.451  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHh-cCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLS-ENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~-~~~~~~vl~lE~G~~   89 (284)
                      ..+|+||||+|++|+.+|.+|. + .+.+|+|||+++.
T Consensus         7 ~~~dVvIIGaG~aGl~aA~~L~~~-~G~~v~viE~~~~   43 (540)
T 3gwf_A            7 HTVDAVVIGAGFGGIYAVHKLHHE-LGLTTVGFDKADG   43 (540)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHT-TCCCEEEEESSSS
T ss_pred             CCCCEEEECcCHHHHHHHHHHHHc-CCCCEEEEECCCC
Confidence            4699999999999999999999 7 6999999999753

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=97.02  E-value=0.00046  Score=67.77  Aligned_cols=37  Identities=24%  Similarity=0.506  Sum_probs=33.0

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ...+|+||||+|++|+.+|.+|.+ .+.+|+|||+++.
T Consensus        19 ~~~~dVvIIGaG~aGl~aA~~L~~-~G~~v~iiE~~~~   55 (549)
T 4ap3_A           19 TTSYDVVVVGAGIAGLYAIHRFRS-QGLTVRAFEAASG   55 (549)
T ss_dssp             -CEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSS
T ss_pred             CCCCCEEEECchHHHHHHHHHHHh-CCCCEEEEeCCCC
Confidence            456999999999999999999999 6999999999753

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.99  E-value=0.0004  Score=66.22  Aligned_cols=35  Identities=34%  Similarity=0.502  Sum_probs=31.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ..+|++|||+|++|+.+|.+|++ .+.+|+|+|++.
T Consensus         4 ~~~dvvIIG~G~aGl~aA~~l~~-~g~~V~lie~~~   38 (458)
T 1lvl_A            4 IQTTLLIIGGGPGGYVAAIRAGQ-LGIPTVLVEGQA   38 (458)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH-HTCCEEEECSSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH-CCCEEEEEccCC
Confidence            46999999999999999999999 589999999943

>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*

Probab=96.97  E-value=0.00056  Score=65.11  Aligned_cols=34  Identities=26%  Similarity=0.264  Sum_probs=31.7

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      +|+||||+|.+|+.+|..|++ .+.+|+|+|..+.
T Consensus         2 ~dViVIGgG~AG~~AA~~la~-~G~~V~liE~~~~   35 (443)
T 3g5s_A            2 ERVNVVGAGLAGSEAAWTLLR-LGVPVRLFEMRPK   35 (443)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH-TTCCEEEECCTTT
T ss_pred             CCEEEECchHHHHHHHHHHHH-CCCcEEEEeccCC
Confidence            699999999999999999999 5999999998874

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=96.95  E-value=0.00047  Score=66.58  Aligned_cols=33  Identities=24%  Similarity=0.451  Sum_probs=30.4

Q ss_pred             CCcccEEEECCChHHHHHHHHHhc-CCCCeEEEec
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSE-NPKWKVLLLE   85 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~-~~~~~vl~lE   85 (284)
                      ...||+||||+|++|+.+|.+|++ . +.+|+|||
T Consensus         5 ~~~~dvvVIGgG~aGl~aA~~la~~~-G~~V~liE   38 (495)
T 2wpf_A            5 SKAFDLVVIGAGSGGLEAGWNAATLY-GKRVAVVD   38 (495)
T ss_dssp             CEEEEEEEECCSHHHHHHHHHHHHHH-CCCEEEEE
T ss_pred             ccccCEEEECCChhHHHHHHHHHHhc-CCeEEEEe
Confidence            346999999999999999999998 6 89999999

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=96.91  E-value=0.00061  Score=67.10  Aligned_cols=35  Identities=29%  Similarity=0.513  Sum_probs=31.8

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      ...||++|||+|++|+.+|.+|++ .+.+|+|+|+.
T Consensus       105 ~~~~dvvVIG~GpAGl~aA~~l~~-~g~~v~liE~~  139 (598)
T 2x8g_A          105 KYDYDLIVIGGGSGGLAAGKEAAK-YGAKTAVLDYV  139 (598)
T ss_dssp             SSSEEEEEECCSHHHHHHHHHHHH-TTCCEEEECCC
T ss_pred             cccccEEEECCCccHHHHHHHHHh-CCCeEEEEecc
Confidence            456999999999999999999999 59999999973

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=96.91  E-value=0.00062  Score=68.43  Aligned_cols=39  Identities=28%  Similarity=0.423  Sum_probs=34.5

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ....+|++|||+|++|+.+|..|++ .+.+|+|+|++...
T Consensus       388 ~~~~~~VvIIGgG~AGl~aA~~La~-~G~~V~liE~~~~~  426 (690)
T 3k30_A          388 KESDARVLVVGAGPSGLEAARALGV-RGYDVVLAEAGRDL  426 (690)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHH-HTCEEEEECSSSSS
T ss_pred             ccccceEEEECCCHHHHHHHHHHHH-CCCeEEEEecCCCC
Confidence            4567899999999999999999999 59999999997643

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=96.90  E-value=0.00068  Score=66.70  Aligned_cols=37  Identities=35%  Similarity=0.382  Sum_probs=33.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..+|+||||+|++|+.+|..|++ .+.+|+|||+.+..
T Consensus       125 ~~~~v~viG~G~aG~~aa~~~~~-~g~~v~~~e~~~~~  161 (572)
T 1d4d_A          125 ETTDVVIIGSGGAGLAAAVSARD-AGAKVILLEKEPIP  161 (572)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHS-SSCCEEEECSSSSS
T ss_pred             CCCCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence            36899999999999999999999 58999999998754

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=96.84  E-value=0.00081  Score=64.50  Aligned_cols=38  Identities=18%  Similarity=0.257  Sum_probs=33.8

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ...+|++|||+|++|+.+|..|++ .+.+|+|+|+....
T Consensus       120 ~~~~~V~IIGgGpAGl~aA~~L~~-~G~~V~v~e~~~~~  157 (456)
T 2vdc_G          120 ELGLSVGVIGAGPAGLAAAEELRA-KGYEVHVYDRYDRM  157 (456)
T ss_dssp             SCCCCEEEECCSHHHHHHHHHHHH-HTCCEEEECSSSSC
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHH-CCCeEEEEeccCCC
Confidence            356899999999999999999999 58999999998643

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=96.81  E-value=0.00069  Score=64.24  Aligned_cols=35  Identities=14%  Similarity=0.334  Sum_probs=31.5

Q ss_pred             ccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGED   89 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~   89 (284)
                      +|+||||+|++|+.+|.+|++. ++.+|+|||+.+.
T Consensus         1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~   36 (452)
T 2cdu_A            1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDN   36 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCC
Confidence            5899999999999999999983 3899999999874

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=96.78  E-value=0.00077  Score=69.01  Aligned_cols=38  Identities=29%  Similarity=0.387  Sum_probs=33.7

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ...+|+||||+|++|+++|..|++ .+.+|+|||++...
T Consensus       334 ~~~~~v~viG~G~~Gl~aA~~l~~-~g~~v~v~E~~~~~  371 (776)
T 4gut_A          334 YHNKSVIIIGAGPAGLAAARQLHN-FGIKVTVLEAKDRI  371 (776)
T ss_dssp             GTSCEEEEECCSHHHHHHHHHHHH-HTCEEEEECSSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHH-CCCcEEEEecccce
Confidence            346899999999999999999999 59999999997644

>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A

Probab=96.76  E-value=0.00095  Score=64.85  Aligned_cols=34  Identities=24%  Similarity=0.382  Sum_probs=31.1

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEecc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLES   86 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~   86 (284)
                      ...+|++|||+|++|+.+|..|++ .+.+|+|+|.
T Consensus       210 ~~~~dVvIIGgG~AGl~aA~~la~-~G~~v~lie~  243 (521)
T 1hyu_A          210 RDAYDVLIVGSGPAGAAAAVYSAR-KGIRTGLMGE  243 (521)
T ss_dssp             SCCEEEEEECCSHHHHHHHHHHHH-TTCCEEEECS
T ss_pred             cCcccEEEECCcHHHHHHHHHHHh-CCCeEEEEEC
Confidence            346999999999999999999999 5999999986

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=96.75  E-value=0.0011  Score=61.34  Aligned_cols=35  Identities=23%  Similarity=0.399  Sum_probs=30.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCC--CeEEEeccCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPK--WKVLLLESGE   88 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~--~~vl~lE~G~   88 (284)
                      ..+|+||||+|++|+.+|.+|.+. +  .+|+|+|+..
T Consensus         3 ~~~dvvIIG~G~aGl~aA~~l~~~-g~~~~V~lie~~~   39 (384)
T 2v3a_A            3 ERAPLVIIGTGLAGYNLAREWRKL-DGETPLLMITADD   39 (384)
T ss_dssp             -CCCEEEECCSHHHHHHHHHHHTT-CSSSCEEEECSSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHhh-CCCCCEEEEECCC
Confidence            358999999999999999999984 5  5799999864

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=96.75  E-value=0.00074  Score=65.11  Aligned_cols=35  Identities=34%  Similarity=0.335  Sum_probs=31.8

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .+|++|||+|++|+.+|.+|++ . .+|+|||+++..
T Consensus       108 ~~dVvIIGgG~aGl~aA~~L~~-~-~~V~vie~~~~~  142 (493)
T 1y56_A          108 VVDVAIIGGGPAGIGAALELQQ-Y-LTVALIEERGWL  142 (493)
T ss_dssp             EESCCEECCSHHHHHHHHHHTT-T-CCEEEECTTSSS
T ss_pred             cCCEEEECccHHHHHHHHHHHh-c-CCEEEEeCCCCC
Confidence            5799999999999999999999 4 999999998754

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=96.73  E-value=0.0012  Score=61.78  Aligned_cols=38  Identities=32%  Similarity=0.517  Sum_probs=33.0

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCe--EEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWK--VLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~--vl~lE~G~~~   90 (284)
                      ...+|++|||+|++|+.+|.+|.+. +.+  |+|||+.+..
T Consensus         7 ~~~~~vvIIGaG~aGl~aA~~L~~~-g~~~~V~lie~~~~~   46 (415)
T 3lxd_A            7 AERADVVIVGAGHGGAQAAIALRQN-GFEGRVLVIGREPEI   46 (415)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHHT-TCCSCEEEEESSSSC
T ss_pred             CCCCcEEEECChHHHHHHHHHHHcc-CcCCCEEEEecCCCC
Confidence            4569999999999999999999994 655  9999998754

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=96.72  E-value=0.0016  Score=65.24  Aligned_cols=38  Identities=16%  Similarity=0.334  Sum_probs=33.8

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ...+|++|||+|++|+.+|..|++ .+.+|+|+|+.+..
T Consensus       371 ~~~~~vvIIGgG~AGl~aA~~l~~-~g~~V~lie~~~~~  408 (671)
T 1ps9_A          371 VQKKNLAVVGAGPAGLAFAINAAA-RGHQVTLFDAHSEI  408 (671)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHT-TTCEEEEEESSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHh-CCCeEEEEeCCCCC
Confidence            456899999999999999999999 59999999997643

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=96.72  E-value=0.0011  Score=63.36  Aligned_cols=34  Identities=18%  Similarity=0.310  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHhc---CCCCe---EEEeccCCc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSE---NPKWK---VLLLESGED   89 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~---~~~~~---vl~lE~G~~   89 (284)
                      +|++|||+|++|+++|..|++   . +.+   |+|+|+.+.
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~-G~~~~~V~v~E~~~~   42 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEK-GAEIPELVCFEKQAD   42 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHT-TCCCCEEEEECSSSS
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhc-CCCCCcEEEEEcCCC
Confidence            699999999999999999998   5 788   999999864

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=96.68  E-value=0.0014  Score=65.59  Aligned_cols=38  Identities=32%  Similarity=0.398  Sum_probs=34.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ...+|++|||+|++|+++|..|++ .+.+|+|+|+....
T Consensus       105 ~~~~~v~viG~G~~gl~~a~~l~~-~g~~v~~~e~~~~~  142 (662)
T 2z3y_A          105 KKTGKVIIIGSGVSGLAAARQLQS-FGMDVTLLEARDRV  142 (662)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             cCCCeEEEECcCHHHHHHHHHHHH-CCCeEEEEecCCCC
Confidence            456899999999999999999999 59999999998654

>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*

Probab=96.67  E-value=0.0012  Score=63.76  Aligned_cols=40  Identities=25%  Similarity=0.454  Sum_probs=34.0

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE   90 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~   90 (284)
                      ....+|+||||+|++|+.+|..|.+. .+.+|+|||+.+..
T Consensus         8 ~~~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~   48 (493)
T 1m6i_A            8 APSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   48 (493)
T ss_dssp             CCSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCCcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            45679999999999999999988762 48899999998653

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=96.67  E-value=0.0013  Score=60.80  Aligned_cols=35  Identities=29%  Similarity=0.453  Sum_probs=30.9

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..|++|||+|++|+.+|.+|.+. + +|+|+|++...
T Consensus         8 ~~~vvIIGgG~AGl~aA~~l~~~-g-~V~lie~~~~~   42 (367)
T 1xhc_A            8 GSKVVIVGNGPGGFELAKQLSQT-Y-EVTVIDKEPVP   42 (367)
T ss_dssp             -CEEEEECCSHHHHHHHHHHTTT-S-EEEEECSSSSC
T ss_pred             CCcEEEECCcHHHHHHHHHHhhc-C-CEEEEECCCCC
Confidence            47999999999999999999984 7 99999998753

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=96.64  E-value=0.0015  Score=61.72  Aligned_cols=35  Identities=29%  Similarity=0.508  Sum_probs=31.3

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCC--eEEEeccCCc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKW--KVLLLESGED   89 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~--~vl~lE~G~~   89 (284)
                      .+|++|||+|++|+.+|..|.+. +.  +|+|||+.+.
T Consensus         4 ~~~vvIIGgG~aGl~aA~~l~~~-g~~~~V~lie~~~~   40 (431)
T 1q1r_A            4 NDNVVIVGTGLAGVEVAFGLRAS-GWEGNIRLVGDATV   40 (431)
T ss_dssp             SCEEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSCCS
T ss_pred             CCcEEEEcCHHHHHHHHHHHHcc-CcCCCEEEEECCCC
Confidence            58999999999999999999984 66  8999998764

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=96.62  E-value=0.0011  Score=62.87  Aligned_cols=36  Identities=22%  Similarity=0.353  Sum_probs=32.2

Q ss_pred             ccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~   90 (284)
                      .|++|||+|++|+.+|.+|++. ++.+|+|||+++..
T Consensus         3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~   39 (452)
T 3oc4_A            3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATV   39 (452)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCC
T ss_pred             CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            5899999999999999999983 48999999998754

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=96.61  E-value=0.0018  Score=65.63  Aligned_cols=38  Identities=29%  Similarity=0.411  Sum_probs=33.9

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ...+|++|||+|++|+.+|..|++ .+.+|+|+|+....
T Consensus       387 ~~~~~VvIIGgGpAGl~aA~~L~~-~G~~Vtlie~~~~~  424 (729)
T 1o94_A          387 KNKDSVLIVGAGPSGSEAARVLME-SGYTVHLTDTAEKI  424 (729)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSST
T ss_pred             cCCceEEEECCCHHHHHHHHHHHH-CCCeEEEEeCCCCc
Confidence            456899999999999999999999 59999999997653

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=96.61  E-value=0.0013  Score=62.34  Aligned_cols=37  Identities=38%  Similarity=0.611  Sum_probs=32.6

Q ss_pred             cccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE   90 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~   90 (284)
                      .+|++|||+|++|+.+|..|.+. ++.+|+|||+++..
T Consensus         3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~   40 (449)
T 3kd9_A            3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWV   40 (449)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCC
T ss_pred             cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCcc
Confidence            47999999999999999999983 47899999998753

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=96.57  E-value=0.0014  Score=62.83  Aligned_cols=37  Identities=35%  Similarity=0.518  Sum_probs=32.2

Q ss_pred             cccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE   90 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~   90 (284)
                      ..|+||||+|++|+.+|.+|++. ++.+|+|||+.+..
T Consensus        36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~   73 (480)
T 3cgb_A           36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIY   73 (480)
T ss_dssp             -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCC
T ss_pred             cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCC
Confidence            47999999999999999999983 48899999998753

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=96.56  E-value=0.0012  Score=62.97  Aligned_cols=37  Identities=22%  Similarity=0.271  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE   90 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~   90 (284)
                      ..|++|||+|++|+.+|.+|.+. ++.+|+|||+.+..
T Consensus         3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~   40 (472)
T 3iwa_A            3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRI   40 (472)
T ss_dssp             -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---
T ss_pred             CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCcc
Confidence            36999999999999999999983 48999999998764

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=96.56  E-value=0.001  Score=63.84  Aligned_cols=36  Identities=11%  Similarity=0.350  Sum_probs=31.9

Q ss_pred             cccEEEECCChHHHHHHHHHhcC--CCCeEEEeccCCc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSEN--PKWKVLLLESGED   89 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~--~~~~vl~lE~G~~   89 (284)
                      .+|+||||+|++|+.+|.+|++.  ++.+|+|||+...
T Consensus        35 ~~dvvIIGaG~aGl~aA~~l~~~g~~~~~V~lie~~~~   72 (490)
T 2bc0_A           35 GSKIVVVGANHAGTACIKTMLTNYGDANEIVVFDQNSN   72 (490)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHHHGGGSEEEEECSSSC
T ss_pred             CCcEEEECCCHHHHHHHHHHHhcCCCCCeEEEEECCCC
Confidence            58999999999999999999984  1399999999874

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=96.54  E-value=0.0014  Score=61.91  Aligned_cols=36  Identities=19%  Similarity=0.351  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~   90 (284)
                      .|++|||+|++|+.+|.+|++. ++.+|+|||+.+..
T Consensus         1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~   37 (447)
T 1nhp_A            1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (447)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCcc
Confidence            3899999999999999999983 48999999998753

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=96.52  E-value=0.0015  Score=60.80  Aligned_cols=36  Identities=19%  Similarity=0.279  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHhcC--CCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSEN--PKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~--~~~~vl~lE~G~~~   90 (284)
                      .|++|||+|++|+.+|..|++.  .+.+|+|||+....
T Consensus         2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~   39 (409)
T 3h8l_A            2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFS   39 (409)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEE
T ss_pred             CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCc
Confidence            3799999999999999999981  38999999998754

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=96.48  E-value=0.0017  Score=63.65  Aligned_cols=39  Identities=31%  Similarity=0.507  Sum_probs=34.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~   90 (284)
                      ....|++|||+|++|+.+|.+|.+. ++.+|+|||+++..
T Consensus        34 ~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~   73 (588)
T 3ics_A           34 WGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYI   73 (588)
T ss_dssp             CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCS
T ss_pred             ccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCc
Confidence            4568999999999999999999983 47899999999864

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=96.45  E-value=0.0019  Score=67.45  Aligned_cols=37  Identities=24%  Similarity=0.443  Sum_probs=33.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..+|++|||+|++|+.+|..|++ .+.+|+|||+.+..
T Consensus       127 ~~~dVvVIGaGpAGl~AA~~la~-~G~~V~lie~~~~~  163 (965)
T 2gag_A          127 VHTDVLVVGAGPAGLAAAREASR-SGARVMLLDERAEA  163 (965)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             cCCCEEEECCCHHHHHHHHHHHh-CCCcEEEEeCCCCC
Confidence            35899999999999999999999 59999999998644

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=96.35  E-value=0.0028  Score=59.14  Aligned_cols=35  Identities=26%  Similarity=0.415  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCC--eEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKW--KVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~--~vl~lE~G~~~   90 (284)
                      .|++|||+|++|+.+|..|.+. +.  +|+|||+.+..
T Consensus         2 k~vvIIGaG~aGl~aA~~L~~~-g~~~~V~lie~~~~~   38 (404)
T 3fg2_P            2 DTVLIAGAGHAGFQVAVSLRQA-KYPGRIALINDEKHL   38 (404)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCCSCEEEECCSSSS
T ss_pred             CCEEEEcChHHHHHHHHHHHhh-CcCCCEEEEeCCCCC
Confidence            4899999999999999999994 66  89999998744

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=96.34  E-value=0.0033  Score=64.96  Aligned_cols=38  Identities=32%  Similarity=0.398  Sum_probs=34.0

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ....|++|||+|++|+.+|..|++ .+.+|+|+|+....
T Consensus       276 ~~~~~v~viG~G~aGl~~A~~l~~-~g~~v~v~E~~~~~  313 (852)
T 2xag_A          276 KKTGKVIIIGSGVSGLAAARQLQS-FGMDVTLLEARDRV  313 (852)
T ss_dssp             SCCCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             CCCCeEEEECCCHHHHHHHHHHHH-CCCcEEEEEecCcC
Confidence            456899999999999999999999 59999999987654

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=96.30  E-value=0.0025  Score=59.67  Aligned_cols=37  Identities=11%  Similarity=0.306  Sum_probs=31.9

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCC--eEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKW--KVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~--~vl~lE~G~~~   90 (284)
                      ..+|++|||+|++|+.+|.+|.+. +.  +|+|||+.+..
T Consensus         6 ~~~~vvIIG~G~aGl~aA~~l~~~-g~~~~V~lie~~~~~   44 (408)
T 2gqw_A            6 LKAPVVVLGAGLASVSFVAELRQA-GYQGLITVVGDEAER   44 (408)
T ss_dssp             CCSSEEEECCSHHHHHHHHHHHHH-TCCSCEEEEESSCSC
T ss_pred             CCCcEEEECChHHHHHHHHHHHcc-CCCCeEEEEECCCCC
Confidence            458999999999999999999984 55  69999998653

>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*

Probab=96.28  E-value=0.0026  Score=60.02  Aligned_cols=37  Identities=27%  Similarity=0.426  Sum_probs=32.6

Q ss_pred             cccEEEECCChHHHHHHHHHhc--CCCCeEEEeccCCcc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSE--NPKWKVLLLESGEDE   90 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~--~~~~~vl~lE~G~~~   90 (284)
                      ..|++|||+|++|+.+|..|.+  ..+.+|+|||+.+..
T Consensus         4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~   42 (437)
T 3sx6_A            4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYF   42 (437)
T ss_dssp             SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEE
T ss_pred             CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCC
Confidence            4699999999999999999998  248999999998854

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=96.09  E-value=0.0035  Score=60.89  Aligned_cols=36  Identities=31%  Similarity=0.484  Sum_probs=31.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~   90 (284)
                      .|++|||+|++|+.+|.+|.+. ++.+|+|+|+.+..
T Consensus         2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~   38 (565)
T 3ntd_A            2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYV   38 (565)
T ss_dssp             CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCS
T ss_pred             CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCc
Confidence            4799999999999999999983 37899999999764

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=96.07  E-value=0.004  Score=59.63  Aligned_cols=38  Identities=18%  Similarity=0.238  Sum_probs=32.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~   90 (284)
                      ..+|++|||+|++|+.+|..|.+. ++.+|+|+|+.+..
T Consensus         5 ~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~   43 (460)
T 1cjc_A            5 QTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   43 (460)
T ss_dssp             -CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcC
Confidence            348999999999999999999984 23999999998654

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=95.98  E-value=0.0049  Score=64.79  Aligned_cols=36  Identities=17%  Similarity=0.281  Sum_probs=32.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCC-eEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKW-KVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~-~vl~lE~G~~   89 (284)
                      ..+|++|||+|++|+.+|..|++ .+. +|+|+|+...
T Consensus       186 ~~~~VvVIGgGpAGl~aA~~L~~-~G~~~Vtv~E~~~~  222 (1025)
T 1gte_A          186 YSAKIALLGAGPASISCASFLAR-LGYSDITIFEKQEY  222 (1025)
T ss_dssp             GGCCEEEECCSHHHHHHHHHHHH-TTCCCEEEEESSSS
T ss_pred             CCCEEEEECccHHHHHHHHHHHh-cCCCcEEEEeCCCC
Confidence            46899999999999999999999 488 7999998753

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=95.96  E-value=0.0068  Score=56.55  Aligned_cols=39  Identities=15%  Similarity=0.134  Sum_probs=33.3

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      -.++..++|||+|++|+.+|..|.. .+.+|+|+|+.+..
T Consensus         6 ~~~~~~~vIvGgG~AGl~aA~~L~~-~~~~itlie~~~~~   44 (385)
T 3klj_A            6 HHKSTKILILGAGPAGFSAAKAALG-KCDDITMINSEKYL   44 (385)
T ss_dssp             --CBCSEEEECCSHHHHHHHHHHTT-TCSCEEEECSSSSC
T ss_pred             ccCCCCEEEEcCcHHHHHHHHHHhC-CCCEEEEEECCCCC
Confidence            3567899999999999999999955 78999999998764

>3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A*

Probab=95.95  E-value=0.0049  Score=57.00  Aligned_cols=34  Identities=35%  Similarity=0.683  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCc
Q psy4112          56 DFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGED   89 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~   89 (284)
                      .+||||+|++|+++|.+|.+. ++.+|+|||....
T Consensus         4 kVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~   38 (401)
T 3vrd_B            4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNET   38 (401)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSS
T ss_pred             EEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCC
Confidence            489999999999999999763 4579999998764

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=95.91  E-value=0.0036  Score=59.86  Aligned_cols=37  Identities=24%  Similarity=0.269  Sum_probs=32.1

Q ss_pred             cccEEEECCChHHHHHHHHHhc-C-C----CCeEEEeccCCcc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSE-N-P----KWKVLLLESGEDE   90 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~-~-~----~~~vl~lE~G~~~   90 (284)
                      .+|++|||+|++|+.+|..|.+ . +    +.+|+|+|+.+..
T Consensus         3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~   45 (456)
T 1lqt_A            3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   45 (456)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCC
Confidence            4899999999999999999987 4 2    7899999998643

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=95.90  E-value=0.0066  Score=56.80  Aligned_cols=35  Identities=29%  Similarity=0.466  Sum_probs=30.7

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCe--EEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWK--VLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~--vl~lE~G~~~   90 (284)
                      .|++|||+|++|+.+|..|.+. +.+  |+|+|+.+..
T Consensus         3 ~~vvIIGaG~AGl~aA~~L~~~-g~~~~V~li~~~~~~   39 (410)
T 3ef6_A            3 THVAIIGNGVGGFTTAQALRAE-GFEGRISLIGDEPHL   39 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT-TCCSEEEEEECSSSS
T ss_pred             CCEEEEcccHHHHHHHHHHHcc-CcCCeEEEEECCCCC
Confidence            4899999999999999999984 655  9999998754

>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*

Probab=95.66  E-value=0.0028  Score=61.24  Aligned_cols=39  Identities=21%  Similarity=0.218  Sum_probs=30.7

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcC-------------CCCeEEEeccCCc
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSEN-------------PKWKVLLLESGED   89 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~-------------~~~~vl~lE~G~~   89 (284)
                      ..+.||+||||+|++|+.+|..|.+.             ....++.+|+-+.
T Consensus        36 ~~~i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~   87 (501)
T 4b63_A           36 QDELHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQ   87 (501)
T ss_dssp             TTSCEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSS
T ss_pred             CCCcCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCC
Confidence            34569999999999999999999762             2346778887654

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=95.64  E-value=0.0095  Score=57.64  Aligned_cols=38  Identities=16%  Similarity=0.312  Sum_probs=33.0

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ..+...+||||+|.+|+.+|.+|.+ .+.+|+|||..+.
T Consensus        39 ~~~KprVVIIGgG~AGl~~A~~L~~-~~~~VtLId~~~~   76 (502)
T 4g6h_A           39 HSDKPNVLILGSGWGAISFLKHIDT-KKYNVSIISPRSY   76 (502)
T ss_dssp             SCSSCEEEEECSSHHHHHHHHHSCT-TTCEEEEEESSSE
T ss_pred             CCCCCCEEEECCcHHHHHHHHHhhh-CCCcEEEECCCCC
Confidence            4456789999999999999999988 5899999998764

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=95.59  E-value=0.0069  Score=57.38  Aligned_cols=35  Identities=20%  Similarity=0.472  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~   90 (284)
                      .+||||+|++|+++|.+|.+. ++.+|+|||+++..
T Consensus         2 KVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~   37 (437)
T 4eqs_A            2 KIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM   37 (437)
T ss_dssp             CEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCS
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCC
Confidence            489999999999999999874 34689999998653

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=95.50  E-value=0.0061  Score=61.85  Aligned_cols=35  Identities=29%  Similarity=0.534  Sum_probs=31.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCC--------CeEEEeccCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPK--------WKVLLLESGE   88 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~--------~~vl~lE~G~   88 (284)
                      ...+++|||+|++|+++|.+|.+ .+        .+|+|+|+..
T Consensus        55 ~~~~v~IiGaGiaGL~aA~~L~~-~g~~~~~~~~~~V~v~E~~~   97 (721)
T 3ayj_A           55 GNYRIAIVGGGAGGIAALYELGR-LAATLPAGSGIDVQIYEADP   97 (721)
T ss_dssp             SEEEEEEECCSHHHHHHHHHHHH-HHTTSCTTCEEEEEEECCCT
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH-cCcccccCCCceEEEEeccC
Confidence            35799999999999999999998 36        8999999987

>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*

Probab=95.21  E-value=0.012  Score=55.32  Aligned_cols=35  Identities=37%  Similarity=0.576  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~   90 (284)
                      .++|||+|++|+.+|.+|.+. ++.+|+|||..+..
T Consensus         4 ~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~   39 (430)
T 3hyw_A            4 HVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYF   39 (430)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEE
T ss_pred             cEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCC
Confidence            489999999999999999873 56899999987653

>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A*

Probab=92.05  E-value=0.13  Score=48.24  Aligned_cols=36  Identities=22%  Similarity=0.293  Sum_probs=32.2

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..+++|||+|..|+.+|..|++ .+.+|.|+|+++..
T Consensus       149 ~~~vvIiG~G~~g~e~A~~l~~-~g~~Vtlv~~~~~~  184 (447)
T 1nhp_A          149 VNNVVVIGSGYIGIEAAEAFAK-AGKKVTVIDILDRP  184 (447)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSSST
T ss_pred             CCeEEEECCCHHHHHHHHHHHH-CCCeEEEEecCccc
Confidence            4689999999999999999999 59999999998753

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=91.99  E-value=0.22  Score=39.11  Aligned_cols=34  Identities=18%  Similarity=0.387  Sum_probs=30.3

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      =.++|+|.|..|..+|..|.+ .+.+|+++|.-+.
T Consensus         8 ~~viIiG~G~~G~~la~~L~~-~g~~v~vid~~~~   41 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLA-SDIPLVVIETSRT   41 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHH-TTCCEEEEESCHH
T ss_pred             CCEEEECcCHHHHHHHHHHHH-CCCCEEEEECCHH
Confidence            469999999999999999999 5999999997653

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=91.57  E-value=0.18  Score=44.46  Aligned_cols=34  Identities=21%  Similarity=0.283  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++ -+.+|.|+|+++..
T Consensus       147 ~vvViGgG~ig~E~A~~l~~-~g~~Vtlv~~~~~~  180 (312)
T 4gcm_A          147 RLFVIGGGDSAVEEGTFLTK-FADKVTIVHRRDEL  180 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TCSEEEEECSSSSC
T ss_pred             EEEEECCCHHHHHHHHHHHh-cCCEEEEEeccccc
Confidence            58999999999999999998 58999999998754

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=91.34  E-value=0.2  Score=39.12  Aligned_cols=32  Identities=22%  Similarity=0.485  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      .++|+|+|..|..+|..|.+ .+.+|.++|.-+
T Consensus         8 ~v~I~G~G~iG~~la~~L~~-~g~~V~~id~~~   39 (141)
T 3llv_A            8 EYIVIGSEAAGVGLVRELTA-AGKKVLAVDKSK   39 (141)
T ss_dssp             SEEEECCSHHHHHHHHHHHH-TTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHH-CCCeEEEEECCH
Confidence            58999999999999999999 499999999753

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=90.98  E-value=0.23  Score=38.02  Aligned_cols=33  Identities=27%  Similarity=0.394  Sum_probs=28.8

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      -.++|||+|..|..+|..|.+ .+.+|.++|..+
T Consensus         5 m~i~IiG~G~iG~~~a~~L~~-~g~~v~~~d~~~   37 (140)
T 1lss_A            5 MYIIIAGIGRVGYTLAKSLSE-KGHDIVLIDIDK   37 (140)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEEESCH
T ss_pred             CEEEEECCCHHHHHHHHHHHh-CCCeEEEEECCH
Confidence            358999999999999999998 489999998643

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=90.68  E-value=0.25  Score=39.42  Aligned_cols=34  Identities=32%  Similarity=0.419  Sum_probs=29.6

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      .-.++|+|+|..|..+|..|.+ .+.+|.+++.-+
T Consensus        19 ~~~v~IiG~G~iG~~la~~L~~-~g~~V~vid~~~   52 (155)
T 2g1u_A           19 SKYIVIFGCGRLGSLIANLASS-SGHSVVVVDKNE   52 (155)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESCG
T ss_pred             CCcEEEECCCHHHHHHHHHHHh-CCCeEEEEECCH
Confidence            3468999999999999999998 488999998754

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=90.58  E-value=0.25  Score=39.27  Aligned_cols=32  Identities=13%  Similarity=0.151  Sum_probs=28.8

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      -.++|+|+|..|..+|..|.+ .+.+|.++|.-
T Consensus         4 ~~vlI~G~G~vG~~la~~L~~-~g~~V~vid~~   35 (153)
T 1id1_A            4 DHFIVCGHSILAINTILQLNQ-RGQNVTVISNL   35 (153)
T ss_dssp             SCEEEECCSHHHHHHHHHHHH-TTCCEEEEECC
T ss_pred             CcEEEECCCHHHHHHHHHHHH-CCCCEEEEECC
Confidence            358999999999999999998 58999999975

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=90.43  E-value=0.2  Score=46.48  Aligned_cols=35  Identities=23%  Similarity=0.142  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      -.++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus       147 ~~vvVIGgG~~g~E~A~~l~~-~g~~Vtvv~~~~~~  181 (385)
T 3klj_A          147 GKAFIIGGGILGIELAQAIID-SGTPASIGIILEYP  181 (385)
T ss_dssp             SCEEEECCSHHHHHHHHHHHH-HTCCEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHh-CCCeEEEEEcCCcc
Confidence            369999999999999999998 58999999998754

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=90.12  E-value=0.26  Score=46.26  Aligned_cols=34  Identities=24%  Similarity=0.335  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+.+|..|++ .+.+|.|+|+++..
T Consensus       169 ~vvIiGgG~~g~e~A~~l~~-~g~~V~lv~~~~~~  202 (455)
T 2yqu_A          169 RLIVVGGGVIGLELGVVWHR-LGAEVIVLEYMDRI  202 (455)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCEEEEEecCCcc
Confidence            58899999999999999998 58999999998753

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=90.05  E-value=0.27  Score=46.50  Aligned_cols=34  Identities=24%  Similarity=0.313  Sum_probs=30.8

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+.+|..|++ .+.+|.|+|+++..
T Consensus       171 ~vvViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~~  204 (464)
T 2eq6_A          171 RLLVIGGGAVGLELGQVYRR-LGAEVTLIEYMPEI  204 (464)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHH-CCCeEEEEEcCCcc
Confidence            58999999999999999999 58999999998753

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=89.83  E-value=0.29  Score=46.01  Aligned_cols=35  Identities=29%  Similarity=0.378  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      -+++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus       171 ~~vvViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~~  205 (455)
T 1ebd_A          171 KSLVVIGGGYIGIELGTAYAN-FGTKVTILEGAGEI  205 (455)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHH-cCCcEEEEEcCCcc
Confidence            468999999999999999999 58999999998643

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=89.73  E-value=0.23  Score=46.83  Aligned_cols=34  Identities=24%  Similarity=0.319  Sum_probs=30.9

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+.+|..|++ .+.+|.|+|+++..
T Consensus       173 ~vvViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~~  206 (458)
T 1lvl_A          173 HLVVVGGGYIGLELGIAYRK-LGAQVSVVEARERI  206 (458)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-HTCEEEEECSSSSS
T ss_pred             eEEEECcCHHHHHHHHHHHH-CCCeEEEEEcCCcc
Confidence            58999999999999999998 58999999998754

>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*

Probab=89.43  E-value=0.33  Score=44.44  Aligned_cols=35  Identities=23%  Similarity=0.372  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      -+++|||+|..|+.+|..|++ .+.+|.++|+++..
T Consensus       146 ~~v~ViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~~  180 (384)
T 2v3a_A          146 RRVLLLGAGLIGCEFANDLSS-GGYQLDVVAPCEQV  180 (384)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHh-CCCeEEEEecCcch
Confidence            468999999999999999999 59999999998754

>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=89.40  E-value=0.28  Score=44.95  Aligned_cols=35  Identities=34%  Similarity=0.487  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      -.++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~~  178 (367)
T 1xhc_A          144 GEAIIIGGGFIGLELAGNLAE-AGYHVKLIHRGAMF  178 (367)
T ss_dssp             SEEEEEECSHHHHHHHHHHHH-TTCEEEEECSSSCC
T ss_pred             CcEEEECCCHHHHHHHHHHHh-CCCEEEEEeCCCee
Confidence            368999999999999999999 58999999998753

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=89.37  E-value=0.38  Score=42.06  Aligned_cols=35  Identities=23%  Similarity=0.293  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      -.++|||+|..|+-+|..|++ -+.+|.|+|+....
T Consensus       153 ~~vvViGgG~ig~e~A~~l~~-~G~~Vt~v~~~~~~  187 (314)
T 4a5l_A          153 KVLMVVGGGDAAMEEALHLTK-YGSKVIILHRRDAF  187 (314)
T ss_dssp             SEEEEECSSHHHHHHHHHHTT-TSSEEEEECSSSSC
T ss_pred             CeEEEECCChHHHHHHHHHHH-hCCeeeeecccccc
Confidence            468999999999999999998 59999999987654

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=88.80  E-value=0.38  Score=45.43  Aligned_cols=34  Identities=29%  Similarity=0.335  Sum_probs=30.8

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       185 ~vvViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~~  218 (478)
T 1v59_A          185 RLTIIGGGIIGLEMGSVYSR-LGSKVTVVEFQPQI  218 (478)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCEEEEEEeCCcc
Confidence            58999999999999999999 58999999998754

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=88.16  E-value=0.44  Score=44.79  Aligned_cols=34  Identities=18%  Similarity=0.205  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+.+|..|++ .+.+|.|+|+++..
T Consensus       169 ~vvViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~~  202 (450)
T 1ges_A          169 RVAVVGAGYIGVELGGVING-LGAKTHLFEMFDAP  202 (450)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHh-cCCEEEEEEeCCch
Confidence            58999999999999999999 59999999998653

>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*

Probab=87.97  E-value=0.47  Score=44.01  Aligned_cols=35  Identities=29%  Similarity=0.354  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      -.++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       146 ~~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~~  180 (408)
T 2gqw_A          146 SRLLIVGGGVIGLELAATART-AGVHVSLVETQPRL  180 (408)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHh-CCCEEEEEEeCCcc
Confidence            479999999999999999999 58999999998754

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=87.76  E-value=0.38  Score=39.21  Aligned_cols=33  Identities=24%  Similarity=0.183  Sum_probs=29.1

Q ss_pred             ccEEEECCChHHHHHHHHHhcCC-CCeEEEeccCC
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENP-KWKVLLLESGE   88 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~-~~~vl~lE~G~   88 (284)
                      -.++|+|.|..|..+|..|.+ . +.+|.++|.-+
T Consensus        40 ~~v~IiG~G~~G~~~a~~L~~-~~g~~V~vid~~~   73 (183)
T 3c85_A           40 AQVLILGMGRIGTGAYDELRA-RYGKISLGIEIRE   73 (183)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH-HHCSCEEEEESCH
T ss_pred             CcEEEECCCHHHHHHHHHHHh-ccCCeEEEEECCH
Confidence            469999999999999999998 6 78999998754

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=87.64  E-value=0.47  Score=42.47  Aligned_cols=34  Identities=26%  Similarity=0.371  Sum_probs=28.2

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       168 ~vvVvG~G~~g~e~a~~l~~-~g~~V~lv~~~~~~  201 (369)
T 3d1c_A          168 QYVVIGGNESGFDAAYQLAK-NGSDIALYTSTTGL  201 (369)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECC----
T ss_pred             EEEEECCCcCHHHHHHHHHh-cCCeEEEEecCCCC
Confidence            68999999999999999999 48899999998653

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=87.48  E-value=0.49  Score=36.25  Aligned_cols=31  Identities=26%  Similarity=0.404  Sum_probs=27.7

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      .++|+|+|..|..+|..|.+ .+.+|.+++..
T Consensus         8 ~v~I~G~G~iG~~~a~~l~~-~g~~v~~~d~~   38 (144)
T 2hmt_A            8 QFAVIGLGRFGGSIVKELHR-MGHEVLAVDIN   38 (144)
T ss_dssp             SEEEECCSHHHHHHHHHHHH-TTCCCEEEESC
T ss_pred             cEEEECCCHHHHHHHHHHHH-CCCEEEEEeCC
Confidence            48999999999999999998 48899999864

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=87.10  E-value=0.38  Score=45.65  Aligned_cols=35  Identities=34%  Similarity=0.427  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      -+++|||+|..|+.+|..|++ .+.+|.++|+++..
T Consensus       187 ~~vvViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~~  221 (480)
T 3cgb_A          187 EDVTIIGGGAIGLEMAETFVE-LGKKVRMIERNDHI  221 (480)
T ss_dssp             CEEEEECCHHHHHHHHHHHHH-TTCEEEEECCGGGT
T ss_pred             CeEEEECCCHHHHHHHHHHHh-cCCeEEEEEeCCch
Confidence            468999999999999999999 58999999998643

>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A*

Probab=86.93  E-value=0.57  Score=44.55  Aligned_cols=35  Identities=17%  Similarity=0.278  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      -.++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       195 ~~vvVIGgG~ig~E~A~~l~~-~g~~Vtlv~~~~~~  229 (490)
T 2bc0_A          195 KRVAVVGAGYIGVELAEAFQR-KGKEVVLIDVVDTC  229 (490)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSSST
T ss_pred             ceEEEECCCHHHHHHHHHHHH-CCCeEEEEEcccch
Confidence            358999999999999999999 58999999998753

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=86.90  E-value=0.45  Score=40.04  Aligned_cols=32  Identities=22%  Similarity=0.452  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      .++|+|+|..|..+|..|.+ .+..|+++|.-+
T Consensus         2 ~iiIiG~G~~G~~la~~L~~-~g~~v~vid~~~   33 (218)
T 3l4b_C            2 KVIIIGGETTAYYLARSMLS-RKYGVVIINKDR   33 (218)
T ss_dssp             CEEEECCHHHHHHHHHHHHH-TTCCEEEEESCH
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCCeEEEEECCH
Confidence            37999999999999999998 589999999654

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=86.62  E-value=0.6  Score=43.66  Aligned_cols=34  Identities=12%  Similarity=0.200  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCe-EEEeccCCc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWK-VLLLESGED   89 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~-vl~lE~G~~   89 (284)
                      -.++|||+|..|+-+|..|++. +.+ |.++++++.
T Consensus       213 k~VvVvG~G~sg~e~A~~l~~~-~~~~V~l~~r~~~  247 (447)
T 2gv8_A          213 ESVLVVGGASSANDLVRHLTPV-AKHPIYQSLLGGG  247 (447)
T ss_dssp             CCEEEECSSHHHHHHHHHHTTT-SCSSEEEECTTCC
T ss_pred             CEEEEEccCcCHHHHHHHHHHH-hCCcEEEEeCCCC
Confidence            4699999999999999999985 777 999998763

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=86.58  E-value=0.64  Score=40.55  Aligned_cols=34  Identities=32%  Similarity=0.354  Sum_probs=30.4

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++ .+.+|.++++++..
T Consensus       146 ~v~VvG~G~~g~e~A~~l~~-~g~~Vtlv~~~~~~  179 (310)
T 1fl2_A          146 RVAVIGGGNSGVEAAIDLAG-IVEHVTLLEFAPEM  179 (310)
T ss_dssp             EEEEECCSHHHHHHHHHHHT-TBSEEEEECSSSSC
T ss_pred             EEEEECCCHHHHHHHHHHHH-hCCEEEEEEeCccc
Confidence            58999999999999999998 58899999988754

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=86.49  E-value=0.63  Score=34.34  Aligned_cols=32  Identities=19%  Similarity=0.489  Sum_probs=27.8

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCC-CeEEEeccC
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPK-WKVLLLESG   87 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~-~~vl~lE~G   87 (284)
                      -.++|+|+|..|..+|..|.+. + .+|.++++.
T Consensus         6 ~~v~I~G~G~iG~~~~~~l~~~-g~~~v~~~~r~   38 (118)
T 3ic5_A            6 WNICVVGAGKIGQMIAALLKTS-SNYSVTVADHD   38 (118)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHC-SSEEEEEEESC
T ss_pred             CeEEEECCCHHHHHHHHHHHhC-CCceEEEEeCC
Confidence            3589999999999999999985 6 889998864

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=86.29  E-value=0.65  Score=43.77  Aligned_cols=34  Identities=24%  Similarity=0.201  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       180 ~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~~  213 (474)
T 1zmd_A          180 KMVVIGAGVIGVELGSVWQR-LGADVTAVEFLGHV  213 (474)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCEEEEEeccCcc
Confidence            58999999999999999998 58999999998753

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=86.15  E-value=0.67  Score=43.55  Aligned_cols=34  Identities=21%  Similarity=0.184  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus       173 ~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~~  206 (464)
T 2a8x_A          173 SIIIAGAGAIGMEFGYVLKN-YGVDVTIVEFLPRA  206 (464)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             eEEEECCcHHHHHHHHHHHH-cCCeEEEEEcCCcc
Confidence            58899999999999999999 58999999998753

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=86.03  E-value=0.78  Score=40.01  Aligned_cols=35  Identities=23%  Similarity=0.236  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      -.++|||+|..|+-+|..|++ .+.+|.++++++..
T Consensus       144 ~~v~VvG~G~~g~e~A~~l~~-~g~~Vtlv~~~~~~  178 (311)
T 2q0l_A          144 KEVAVLGGGDTAVEEAIYLAN-ICKKVYLIHRRDGF  178 (311)
T ss_dssp             SEEEEECCSHHHHHHHHHHHT-TSSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHh-cCCEEEEEeeCCcc
Confidence            468999999999999999998 48999999988654

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=86.01  E-value=0.69  Score=43.68  Aligned_cols=33  Identities=24%  Similarity=0.239  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++|||+|..|+.+|..|++ .+.+|.++|+++.
T Consensus       168 ~vvVvGgG~~g~e~A~~l~~-~G~~Vtlv~~~~~  200 (463)
T 2r9z_A          168 RVAIIGAGYIGIELAGLLRS-FGSEVTVVALEDR  200 (463)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHh-cCCEEEEEEcCCc
Confidence            58999999999999999999 5999999999864

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=85.77  E-value=1  Score=43.66  Aligned_cols=35  Identities=17%  Similarity=0.187  Sum_probs=31.6

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .-.++|||+|..|+-+|..|++ .+.+|.|+++.+.
T Consensus       178 ~krV~VIG~G~sgve~a~~l~~-~~~~Vtv~~r~~~  212 (540)
T 3gwf_A          178 GRRVGVIGTGSTGQQVITSLAP-EVEHLTVFVRTPQ  212 (540)
T ss_dssp             TSEEEEECCSHHHHHHHHHHTT-TCSEEEEEESSCC
T ss_pred             cceEEEECCCchHHHHHHHHHh-hCCEEEEEECCCC
Confidence            3469999999999999999998 4899999999986

>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*

Probab=85.23  E-value=0.81  Score=42.35  Aligned_cols=35  Identities=31%  Similarity=0.527  Sum_probs=31.5

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      -.++|||+|..|+-+|..|.+ .+.+|.++|+.+..
T Consensus       144 ~~vvViGgG~~g~E~A~~l~~-~g~~Vtvv~~~~~~  178 (410)
T 3ef6_A          144 TRLLIVGGGLIGCEVATTARK-LGLSVTILEAGDEL  178 (410)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHHh-CCCeEEEEecCCcc
Confidence            469999999999999999999 58999999998754

>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*

Probab=85.21  E-value=0.81  Score=42.78  Aligned_cols=35  Identities=31%  Similarity=0.424  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      -.++|||+|..|+-+|..|.+ .+.+|.++|+++..
T Consensus       150 ~~vvViGgG~~g~E~A~~l~~-~G~~Vtlv~~~~~~  184 (431)
T 1q1r_A          150 NRLVVIGGGYIGLEVAATAIK-ANMHVTLLDTAARV  184 (431)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHh-CCCEEEEEEeCCcc
Confidence            468999999999999999999 58999999998653

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=85.21  E-value=0.79  Score=40.45  Aligned_cols=35  Identities=20%  Similarity=0.262  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      -.++|||+|..|+-+|..|++ .+.+|.++++++..
T Consensus       153 ~~v~viG~G~~g~e~a~~l~~-~g~~V~~v~~~~~~  187 (335)
T 2zbw_A          153 KRVLIVGGGDSAVDWALNLLD-TARRITLIHRRPQF  187 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHTTT-TSSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHh-hCCEEEEEEcCCcc
Confidence            368999999999999999998 48899999998754

>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii}

Probab=85.14  E-value=0.81  Score=42.80  Aligned_cols=34  Identities=32%  Similarity=0.470  Sum_probs=31.1

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       150 ~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~~  183 (449)
T 3kd9_A          150 NVVIIGGGYIGIEMAEAFAA-QGKNVTMIVRGERV  183 (449)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEEESSSST
T ss_pred             eEEEECCCHHHHHHHHHHHh-CCCeEEEEEcCCcc
Confidence            79999999999999999999 58999999998754

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=85.09  E-value=0.83  Score=43.57  Aligned_cols=34  Identities=15%  Similarity=0.202  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       178 ~vvViGgG~ig~E~A~~l~~-~g~~Vtlv~~~~~~  211 (500)
T 1onf_A          178 KIGIVGSGYIAVELINVIKR-LGIDSYIFARGNRI  211 (500)
T ss_dssp             EEEEECCSHHHHHHHHHHHT-TTCEEEEECSSSSS
T ss_pred             eEEEECChHHHHHHHHHHHH-cCCeEEEEecCCcc
Confidence            58999999999999999998 58999999998753

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=85.08  E-value=0.89  Score=40.05  Aligned_cols=35  Identities=26%  Similarity=0.298  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      -.++|||+|..|+-+|..|++ .+.+|.++++++..
T Consensus       160 ~~v~VvG~G~~g~e~A~~l~~-~g~~V~lv~~~~~~  194 (333)
T 1vdc_A          160 KPLAVIGGGDSAMEEANFLTK-YGSKVYIIHRRDAF  194 (333)
T ss_dssp             SEEEEECCSHHHHHHHHHHTT-TSSEEEEECSSSSC
T ss_pred             CeEEEECCChHHHHHHHHHHh-cCCeEEEEecCCcC
Confidence            368999999999999999998 48899999988653

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=85.01  E-value=0.72  Score=44.85  Aligned_cols=35  Identities=14%  Similarity=0.193  Sum_probs=31.4

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      -.++|||+|..|+-+|..|++ ...+|.|+++.+..
T Consensus       186 krV~VIG~G~tgve~a~~la~-~~~~Vtv~~r~~~~  220 (545)
T 3uox_A          186 KRVGVIGTGATGVQIIPIAAE-TAKELYVFQRTPNW  220 (545)
T ss_dssp             CEEEEECCSHHHHHHHHHHTT-TBSEEEEEESSCCC
T ss_pred             CeEEEECCCccHHHHHHHHHh-hCCEEEEEEcCCCc
Confidence            469999999999999999998 48899999999853

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=84.99  E-value=0.64  Score=44.04  Aligned_cols=34  Identities=24%  Similarity=0.316  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus       187 ~vvViGgG~ig~E~A~~l~~-~G~~Vtlv~~~~~~  220 (482)
T 1ojt_A          187 KLLIIGGGIIGLEMGTVYST-LGSRLDVVEMMDGL  220 (482)
T ss_dssp             EEEEESCSHHHHHHHHHHHH-HTCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCeEEEEEECCcc
Confidence            58899999999999999998 58999999998753

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=84.84  E-value=0.56  Score=44.09  Aligned_cols=34  Identities=21%  Similarity=0.259  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       179 ~vvViGgG~~g~e~A~~l~~-~g~~Vtli~~~~~~  212 (470)
T 1dxl_A          179 KLVVIGAGYIGLEMGSVWGR-IGSEVTVVEFASEI  212 (470)
T ss_dssp             EEEESCCSHHHHHHHHHHHH-HTCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCcEEEEEcCCcc
Confidence            58999999999999999998 58999999998753

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=84.84  E-value=0.83  Score=43.53  Aligned_cols=34  Identities=21%  Similarity=0.209  Sum_probs=31.0

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       176 ~vvViGgG~ig~E~A~~l~~-~g~~Vtlv~~~~~~  209 (492)
T 3ic9_A          176 SVAVFGPGVIGLELGQALSR-LGVIVKVFGRSGSV  209 (492)
T ss_dssp             EEEEESSCHHHHHHHHHHHH-TTCEEEEECCTTCC
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCeEEEEEECCcc
Confidence            58999999999999999999 59999999998754

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=84.83  E-value=0.85  Score=43.19  Aligned_cols=33  Identities=24%  Similarity=0.310  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++.
T Consensus       187 ~vvViGgG~ig~E~A~~l~~-~g~~Vtlv~~~~~  219 (479)
T 2hqm_A          187 KVVVVGAGYIGIELAGVFHG-LGSETHLVIRGET  219 (479)
T ss_dssp             EEEEECSSHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCceEEEEeCCc
Confidence            58999999999999999999 5899999999875

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=84.81  E-value=0.72  Score=43.66  Aligned_cols=33  Identities=9%  Similarity=0.085  Sum_probs=29.9

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++|||+|..|+-+|..|++ .+.+|.++++++.
T Consensus       199 ~VvVVG~G~sg~eiA~~l~~-~g~~V~li~~~~~  231 (464)
T 2xve_A          199 TVLLVGSSYSAEDIGSQCYK-YGAKKLISCYRTA  231 (464)
T ss_dssp             EEEEECCSTTHHHHHHHHHH-TTCSEEEEECSSC
T ss_pred             EEEEEcCCCCHHHHHHHHHH-hCCeEEEEEECCC
Confidence            58999999999999999999 4889999998764

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=84.58  E-value=0.99  Score=40.07  Aligned_cols=35  Identities=26%  Similarity=0.309  Sum_probs=30.8

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      -.++|||+|..|+-+|..|++ .+.+|.++++++..
T Consensus       156 ~~v~ViG~G~~g~e~a~~l~~-~g~~V~l~~~~~~~  190 (335)
T 2a87_A          156 QDIAVIGGGDSAMEEATFLTR-FARSVTLVHRRDEF  190 (335)
T ss_dssp             CEEEEECSSHHHHHHHHHHTT-TCSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHH-hCCeEEEEEcCCcC
Confidence            468999999999999999998 48999999988643

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=84.40  E-value=0.98  Score=39.47  Aligned_cols=35  Identities=26%  Similarity=0.233  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      -.++|||+|..|+-+|..|++ .+.+|.++++++..
T Consensus       146 ~~v~ViG~G~~g~e~A~~l~~-~g~~Vtlv~~~~~~  180 (320)
T 1trb_A          146 QKVAVIGGGNTAVEEALYLSN-IASEVHLIHRRDGF  180 (320)
T ss_dssp             SEEEEECSSHHHHHHHHHHTT-TSSEEEEECSSSSC
T ss_pred             CeEEEECCCHHHHHHHHHHHh-cCCeEEEEEeCCcc
Confidence            368999999999999999998 48999999988654

>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}

Probab=84.39  E-value=0.95  Score=42.36  Aligned_cols=34  Identities=29%  Similarity=0.454  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|.+ .+.+|.++|+++..
T Consensus       151 ~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~~  184 (452)
T 2cdu_A          151 TITIIGSGYIGAELAEAYSN-QNYNVNLIDGHERV  184 (452)
T ss_dssp             EEEEECCSHHHHHHHHHHHT-TTCEEEEEESSSST
T ss_pred             eEEEECcCHHHHHHHHHHHh-cCCEEEEEEcCCch
Confidence            58999999999999999998 58999999998753

>3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus}

Probab=84.37  E-value=0.94  Score=40.61  Aligned_cols=32  Identities=22%  Similarity=0.369  Sum_probs=29.0

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      .+.|||+|..|+..|..|++ .+..|.++.+..
T Consensus         4 kI~IiGaGaiG~~~a~~L~~-~g~~V~~~~r~~   35 (320)
T 3i83_A            4 NILVIGTGAIGSFYGALLAK-TGHCVSVVSRSD   35 (320)
T ss_dssp             EEEEESCCHHHHHHHHHHHH-TTCEEEEECSTT
T ss_pred             EEEEECcCHHHHHHHHHHHh-CCCeEEEEeCCh
Confidence            57899999999999999999 589999998865

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=84.19  E-value=1  Score=39.68  Aligned_cols=34  Identities=21%  Similarity=0.233  Sum_probs=30.3

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++ .+.+|.++++++..
T Consensus       154 ~v~VvG~G~~g~e~A~~l~~-~g~~Vtlv~~~~~~  187 (325)
T 2q7v_A          154 KVVVIGGGDAAVEEGMFLTK-FADEVTVIHRRDTL  187 (325)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TCSEEEEECSSSSC
T ss_pred             EEEEECCCHHHHHHHHHHHh-cCCEEEEEeCCCcC
Confidence            58899999999999999998 48999999988643

>4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A*

Probab=83.94  E-value=0.78  Score=43.06  Aligned_cols=34  Identities=18%  Similarity=0.258  Sum_probs=31.1

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++ .+.+|.|+|++...
T Consensus       149 ~vvViGgG~ig~E~A~~l~~-~g~~Vtlv~~~~~l  182 (437)
T 4eqs_A          149 KVLVVGAGYVSLEVLENLYE-RGLHPTLIHRSDKI  182 (437)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-HTCEEEEEESSSCC
T ss_pred             EEEEECCccchhhhHHHHHh-cCCcceeeeeeccc
Confidence            68999999999999999999 59999999998754

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=83.78  E-value=0.99  Score=42.42  Aligned_cols=33  Identities=21%  Similarity=0.216  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++.
T Consensus       178 ~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~  210 (467)
T 1zk7_A          178 RLAVIGSSVVALELAQAFAR-LGSKVTVLARNTL  210 (467)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSCT
T ss_pred             EEEEECCCHHHHHHHHHHHH-cCCEEEEEEECCc
Confidence            58999999999999999999 5899999999874

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=83.68  E-value=0.68  Score=44.19  Aligned_cols=33  Identities=21%  Similarity=0.459  Sum_probs=29.6

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .+||+|+|..|..+|..|++ .+..|+|||.-+.
T Consensus         5 ~iiI~G~G~vG~~la~~L~~-~~~~v~vId~d~~   37 (461)
T 4g65_A            5 KIIILGAGQVGGTLAENLVG-ENNDITIVDKDGD   37 (461)
T ss_dssp             EEEEECCSHHHHHHHHHTCS-TTEEEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHH-CCCCEEEEECCHH
Confidence            48999999999999999998 4999999997654

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=83.48  E-value=1.2  Score=39.07  Aligned_cols=35  Identities=26%  Similarity=0.307  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      -.++|||+|..|+-+|..|.+ .+.+|.++++++..
T Consensus       174 ~~v~vvG~G~~g~e~a~~l~~-~g~~v~~v~~~~~~  208 (338)
T 3itj_A          174 KPLAVIGGGDSACEEAQFLTK-YGSKVFMLVRKDHL  208 (338)
T ss_dssp             SEEEEECSSHHHHHHHHHHTT-TSSEEEEECSSSSC
T ss_pred             CEEEEECCCHHHHHHHHHHHh-cCCEEEEEEcCCcc
Confidence            458999999999999999998 48999999998754

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=83.38  E-value=1.1  Score=42.15  Aligned_cols=34  Identities=26%  Similarity=0.323  Sum_probs=30.6

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       176 ~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~~  209 (468)
T 2qae_A          176 TMVVIGGGVIGLELGSVWAR-LGAEVTVVEFAPRC  209 (468)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHH-hCCEEEEEecCCcc
Confidence            58899999999999999999 58999999998754

>3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens}

Probab=83.32  E-value=0.95  Score=40.44  Aligned_cols=32  Identities=22%  Similarity=0.251  Sum_probs=28.9

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      .+.|||+|..|+..|..|++ .+..|.++.+..
T Consensus         4 kI~IiGaGaiG~~~a~~L~~-~g~~V~~~~r~~   35 (312)
T 3hn2_A            4 RIAIVGAGALGLYYGALLQR-SGEDVHFLLRRD   35 (312)
T ss_dssp             CEEEECCSTTHHHHHHHHHH-TSCCEEEECSTT
T ss_pred             EEEEECcCHHHHHHHHHHHH-CCCeEEEEEcCc
Confidence            58899999999999999999 588999998865

>1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A*

Probab=82.93  E-value=1.3  Score=38.40  Aligned_cols=32  Identities=16%  Similarity=0.145  Sum_probs=28.5

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          57 FVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      +.|||+|..|..+|..|++ .+.+|.++++...
T Consensus         3 i~iiG~G~~G~~~a~~l~~-~g~~V~~~~r~~~   34 (291)
T 1ks9_A            3 ITVLGCGALGQLWLTALCK-QGHEVQGWLRVPQ   34 (291)
T ss_dssp             EEEECCSHHHHHHHHHHHH-TTCEEEEECSSCC
T ss_pred             EEEECcCHHHHHHHHHHHh-CCCCEEEEEcCcc
Confidence            7899999999999999999 5889999987654

>3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A*

Probab=82.87  E-value=1.1  Score=40.93  Aligned_cols=33  Identities=24%  Similarity=0.349  Sum_probs=29.4

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      -.|.|||+|..|.-.|..++. .+..|.++|.-+
T Consensus         7 ~~VaViGaG~MG~giA~~~a~-~G~~V~l~D~~~   39 (319)
T 3ado_A            7 GDVLIVGSGLVGRSWAMLFAS-GGFRVKLYDIEP   39 (319)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCCEEEECSCH
T ss_pred             CeEEEECCcHHHHHHHHHHHh-CCCeEEEEECCH
Confidence            358899999999999999999 599999999654

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=82.75  E-value=1.2  Score=39.19  Aligned_cols=34  Identities=32%  Similarity=0.386  Sum_probs=30.1

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++ .+.+|.++++++..
T Consensus       157 ~v~viG~G~~g~e~a~~l~~-~g~~V~~i~~~~~~  190 (319)
T 3cty_A          157 RVVTIGGGNSGAIAAISMSE-YVKNVTIIEYMPKY  190 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHTT-TBSEEEEECSSSSC
T ss_pred             eEEEECCCHHHHHHHHHHHh-hCCcEEEEEcCCcc
Confidence            58899999999999999998 48899999987643

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=82.61  E-value=1.2  Score=39.99  Aligned_cols=34  Identities=26%  Similarity=0.300  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|.+ .+.+|.++++++..
T Consensus       165 ~vvVvG~G~~g~e~A~~l~~-~g~~V~lv~~~~~~  198 (360)
T 3ab1_A          165 RVVIVGGGDSALDWTVGLIK-NAASVTLVHRGHEF  198 (360)
T ss_dssp             EEEEECSSHHHHHHHHHTTT-TSSEEEEECSSSSC
T ss_pred             cEEEECCCHHHHHHHHHHHh-cCCEEEEEEcCCCC
Confidence            58999999999999999998 48899999998754

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=82.51  E-value=1.1  Score=42.26  Aligned_cols=34  Identities=24%  Similarity=0.327  Sum_probs=30.4

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      -.+||||.|..|..+|..|.+ .+..|++||.-+.
T Consensus         5 ~~viIiG~Gr~G~~va~~L~~-~g~~vvvId~d~~   38 (413)
T 3l9w_A            5 MRVIIAGFGRFGQITGRLLLS-SGVKMVVLDHDPD   38 (413)
T ss_dssp             CSEEEECCSHHHHHHHHHHHH-TTCCEEEEECCHH
T ss_pred             CeEEEECCCHHHHHHHHHHHH-CCCCEEEEECCHH
Confidence            359999999999999999999 5999999997764

>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*

Probab=82.38  E-value=1.2  Score=42.80  Aligned_cols=34  Identities=26%  Similarity=0.359  Sum_probs=31.0

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       153 ~vvViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~~  186 (565)
T 3ntd_A          153 HATVVGGGFIGLEMMESLHH-LGIKTTLLELADQV  186 (565)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEEESSSSS
T ss_pred             EEEEECCCHHHHHHHHHHHh-cCCcEEEEEcCCcc
Confidence            69999999999999999999 48999999998754

>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}

Probab=82.08  E-value=1.3  Score=40.70  Aligned_cols=35  Identities=23%  Similarity=0.216  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      -.++|||+|..|+-+|..|.+ .+.+|.++|+.+..
T Consensus       143 ~~vvViGgG~~g~e~A~~l~~-~g~~Vtvv~~~~~~  177 (404)
T 3fg2_P          143 KHVVVIGAGFIGLEFAATARA-KGLEVDVVELAPRV  177 (404)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHh-CCCEEEEEeCCCcc
Confidence            358999999999999999998 58999999998754

>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*

Probab=82.02  E-value=0.84  Score=42.58  Aligned_cols=37  Identities=19%  Similarity=0.302  Sum_probs=32.0

Q ss_pred             cccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE   90 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~   90 (284)
                      .-.++|||+|..|+-+|..|++. ++.+|.++++++..
T Consensus       227 ~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~  264 (463)
T 3s5w_A          227 PMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASAL  264 (463)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSC
T ss_pred             CCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCC
Confidence            45799999999999999999984 37899999998754

>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}

Probab=82.01  E-value=1.3  Score=40.80  Aligned_cols=35  Identities=34%  Similarity=0.316  Sum_probs=31.3

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      -.++|||+|..|+-+|..|.+ .+.+|.++|+++..
T Consensus       153 ~~vvViGgG~~g~e~A~~l~~-~g~~Vtvv~~~~~~  187 (415)
T 3lxd_A          153 KNAVVIGGGYIGLEAAAVLTK-FGVNVTLLEALPRV  187 (415)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSSST
T ss_pred             CeEEEECCCHHHHHHHHHHHh-cCCeEEEEecCCch
Confidence            468999999999999999999 58999999998754

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=81.77  E-value=1.1  Score=42.58  Aligned_cols=34  Identities=24%  Similarity=0.325  Sum_probs=30.5

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       200 ~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~~  233 (491)
T 3urh_A          200 SMIVVGGGVIGLELGSVWAR-LGAKVTVVEFLDTI  233 (491)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-HTCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCEEEEEeccccc
Confidence            47999999999999999998 58999999998754

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=81.69  E-value=0.71  Score=44.38  Aligned_cols=36  Identities=25%  Similarity=0.383  Sum_probs=29.8

Q ss_pred             ccEEEECCChHHHHHHHHHhcC-------------CCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSEN-------------PKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~-------------~~~~vl~lE~G~~~   90 (284)
                      ..++|||+|++|+-+|..|++.             ...+|.|+|+++..
T Consensus       218 ~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~i  266 (502)
T 4g6h_A          218 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIV  266 (502)
T ss_dssp             TEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSS
T ss_pred             cceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEecccccc
Confidence            3589999999999999988751             24689999999864

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=81.49  E-value=1.4  Score=41.49  Aligned_cols=34  Identities=26%  Similarity=0.302  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus       174 ~vvViGgG~~g~e~A~~l~~-~g~~Vtlv~~~~~~  207 (466)
T 3l8k_A          174 DMVIIGAGYIGLEIASIFRL-MGVQTHIIEMLDRA  207 (466)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHH-cCCEEEEEEeCCcC
Confidence            58999999999999999999 58999999998753

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=81.06  E-value=1.5  Score=42.62  Aligned_cols=35  Identities=14%  Similarity=0.251  Sum_probs=31.4

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .-.++|||+|..|+-+|..|++ .+.+|.|+++.+.
T Consensus       191 ~krV~VIG~G~sgve~a~~l~~-~~~~Vtv~~r~~~  225 (549)
T 4ap3_A          191 GKRVGVIGTGSSGIQSIPIIAE-QAEQLFVFQRSAN  225 (549)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH-HBSEEEEEESSCC
T ss_pred             CCEEEEECCCchHHHHHHHHHh-hCCEEEEEECCCC
Confidence            3469999999999999999998 4889999999985

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=80.93  E-value=1.5  Score=41.27  Aligned_cols=33  Identities=27%  Similarity=0.218  Sum_probs=30.2

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++.
T Consensus       189 ~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~~~  221 (478)
T 3dk9_A          189 RSVIVGAGYIAVEMAGILSA-LGSKTSLMIRHDK  221 (478)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             cEEEECCCHHHHHHHHHHHH-cCCeEEEEEeCCc
Confidence            58999999999999999999 5899999999865

>2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*

Probab=80.91  E-value=1.3  Score=43.04  Aligned_cols=31  Identities=16%  Similarity=0.108  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      .++|||+|..|+-+|..|++ .+.+|.++|++
T Consensus       288 ~vvViGgG~~g~E~A~~l~~-~g~~Vtlv~~~  318 (598)
T 2x8g_A          288 KTLVIGASYVALECAGFLAS-LGGDVTVMVRS  318 (598)
T ss_dssp             SEEEECCSHHHHHHHHHHHH-TTCCEEEEESS
T ss_pred             EEEEECCCHHHHHHHHHHHH-cCCEEEEEECC
Confidence            58999999999999999999 48899999987

>3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum}

Probab=80.80  E-value=1.4  Score=39.75  Aligned_cols=31  Identities=26%  Similarity=0.431  Sum_probs=28.2

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      .+.|||+|..|+..|..|++ .+..|.++++.
T Consensus         5 kI~IiGaG~~G~~~a~~L~~-~g~~V~~~~r~   35 (335)
T 3ghy_A            5 RICIVGAGAVGGYLGARLAL-AGEAINVLARG   35 (335)
T ss_dssp             CEEEESCCHHHHHHHHHHHH-TTCCEEEECCH
T ss_pred             EEEEECcCHHHHHHHHHHHH-CCCEEEEEECh
Confidence            58899999999999999999 58899999875

>1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A*

Probab=80.56  E-value=1.5  Score=38.79  Aligned_cols=32  Identities=28%  Similarity=0.510  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      .+.|||+|..|..+|..|++ .+.+|.+++..+
T Consensus        17 ~I~VIG~G~mG~~iA~~la~-~G~~V~~~d~~~   48 (302)
T 1f0y_A           17 HVTVIGGGLMGAGIAQVAAA-TGHTVVLVDQTE   48 (302)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSCH
T ss_pred             EEEEECCCHHHHHHHHHHHh-CCCeEEEEECCH
Confidence            48899999999999999998 589999998754

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=80.51  E-value=1.8  Score=36.28  Aligned_cols=33  Identities=18%  Similarity=0.316  Sum_probs=29.1

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      -.+.|||.|..|..+|..|++ .+.+|.++++.+
T Consensus        20 ~~I~iiG~G~mG~~la~~l~~-~g~~V~~~~~~~   52 (209)
T 2raf_A           20 MEITIFGKGNMGQAIGHNFEI-AGHEVTYYGSKD   52 (209)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEECTTC
T ss_pred             CEEEEECCCHHHHHHHHHHHH-CCCEEEEEcCCH
Confidence            468899999999999999998 588999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	284
d1gpea1	391	c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penic	4e-31
d2f5va1	379	c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {W	2e-29
d1cf3a1	385	c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Asper	5e-27
d1ju2a1	351	c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {	4e-25
d3coxa1	370	c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of	4e-21
d1n4wa1	367	c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of	3e-19
d1kdga1	360	c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain	7e-18
d1d5ta1	336	c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide di	1e-06
d2bcgg1	297	c.3.1.3 (G:5-301) Guanine nucleotide dissociation	2e-06
d1rp0a1	278	c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi	3e-06
d1ryia1	276	c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {	2e-05
d1ebda1	223	c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehyd	2e-05
d3grsa1	221	c.3.1.5 (A:18-165,A:291-363) Glutathione reductase	2e-05
d2gf3a1	281	c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bac	2e-05
d1h6va1	235	c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin	4e-05
d1aoga1	238	c.3.1.5 (A:3-169,A:287-357) Trypanothione reductas	4e-05
d2i0za1	251	c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {B	4e-05
d3lada1	229	c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehyd	6e-05
d1onfa1	259	c.3.1.5 (A:1-153,A:271-376) Glutathione reductase	7e-05
d1feca1	240	c.3.1.5 (A:1-169,A:287-357) Trypanothione reductas	8e-05
d1ojta1	229	c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide deh	2e-04
d1lvla1	220	c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehyd	2e-04
d1gesa1	217	c.3.1.5 (A:3-146,A:263-335) Glutathione reductase	2e-04
d1dxla1	221	c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehyd	2e-04
d2gmha1	380	c.3.1.2 (A:4-236,A:336-482) Electron transfer flav	3e-04
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	3e-04
d1pj5a2	305	c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine ox	3e-04
d1v59a1	233	c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehyd	4e-04
d1y0pa2	308	c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (	4e-04
d3c96a1	288	c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps	5e-04
d1b5qa1	347	c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai	8e-04
d2gqfa1	253	c.3.1.8 (A:1-194,A:343-401) Hypothetical protein H	0.001
d1d4ca2	322	c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (	0.001
d1mo9a1	261	c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketop	0.001
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	0.001
d1chua2	305	c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {E	0.002
d2gjca1	311	c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th	0.002
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	0.002
d1m6ia1	213	c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing f	0.002
d1kf6a2	311	c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Es	0.002
d1pn0a1	360	c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {So	0.003
d1qo8a2	317	c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (	0.003
d2bs2a2	336	c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wo	0.004
d1jnra2	356	c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reduct	0.004
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	0.004

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} Length = 391

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

 Score =  117 bits (293), Expect = 4e-31
 Identities = 46/173 (26%), Positives = 76/173 (43%), Gaps = 21/173 (12%)

Query: 54  EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG---EDENIYTNIPLLAHFNSLTHFNW 110
            YD++I GGG+ G  VA +L+ENPK KVL++E G    ++      P        T  + 
Sbjct: 24  TYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQ 83

Query: 111 GYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTY-EAAGNKGW 169
            Y        P    + N       GKGLGGS+++N   +TR +K   D++ +  G +GW
Sbjct: 84  NYLTV-----PL---INNRTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGW 135

Query: 170 GYDSVLKYFLKSENNTSEF---------LDADIHSREGPLKVTNIPYQNLLTE 213
            +D++ +Y  K+E   +            +A  H   G ++          + 
Sbjct: 136 NWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSP 188

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} Length = 379

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

 Score =  112 bits (280), Expect = 2e-29
 Identities = 26/242 (10%), Positives = 48/242 (19%), Gaps = 36/242 (14%)

Query: 54  EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYK 113
           +YD VI+G G  G   A  L     +KV + + GE ++         +          + 
Sbjct: 4   KYDVVIVGSGPIGCTYARELVGAG-YKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFV 62

Query: 114 LEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYD--------TYEAAG 165
                +                           + +    N +                G
Sbjct: 63  NV--IQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVG 120

Query: 166 NKGWGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKV 225
                +      F + +       DAD    E     T                      
Sbjct: 121 GMSTHWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKAE------------------- 161

Query: 226 TNIPYQNLLTEKFTQAACELGY-RIYDYTGIEPATEGFSKL--QSTLSKGQRYSANRAYL 282
               Y    T++F ++                        L           +S+     
Sbjct: 162 ---SYFQTGTDQFKESIRHNLVLNKLAEEYKGQRDFQQIPLAATRRSPTFVEWSSANTVF 218

Query: 283 KS 284
             
Sbjct: 219 DL 220

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} Length = 385

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

 Score =  106 bits (264), Expect = 5e-27
 Identities = 41/202 (20%), Positives = 68/202 (33%), Gaps = 22/202 (10%)

Query: 54  EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG---EDENIYTNIPLLAHFNSLTHFNW 110
             D++I GGG+ G   A RL+ENP   VL++ESG    D                +  + 
Sbjct: 17  TVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDH 76

Query: 111 GYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKG-W 169
            Y+          L   N       G GLGGS+++N   +TR +K   D++E       W
Sbjct: 77  AYE-------TVELATNNQTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGW 129

Query: 170 GYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIP 229
            +D+V  Y L++E   +                    +    +                 
Sbjct: 130 NWDNVAAYSLQAERARAPNAKQIAA-----------GHYFNASCHGVNGTVHAGPRDTGD 178

Query: 230 YQNLLTEKFTQAACELGYRIYD 251
             + + +    A  + G     
Sbjct: 179 DYSPIVKALMSAVEDRGVPTKK 200

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} Length = 351

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

 Score =  100 bits (249), Expect = 4e-25
 Identities = 41/137 (29%), Positives = 57/137 (41%), Gaps = 12/137 (8%)

Query: 48  NKPILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTH 107
           +  +   YD+VI+GGG  G  +A  LSE   +KVL+LE G     Y N+     F     
Sbjct: 20  DLELEGSYDYVIVGGGTSGCPLAATLSEK--YKVLVLERGSLPTAYPNVLTADGFVYNLQ 77

Query: 108 FNWGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNK 167
                K       P    +  D     RG+ LGG+SI+N  +Y R N   Y     A   
Sbjct: 78  QEDDGK------TPVERFVSEDGIDNVRGRVLGGTSIINAGVYARANTSIYS----ASGV 127

Query: 168 GWGYDSVLKYFLKSENN 184
            W  D V + +   E+ 
Sbjct: 128 DWDMDLVNQTYEWVEDT 144

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

 Score = 89.6 bits (221), Expect = 4e-21
 Identities = 19/167 (11%), Positives = 47/167 (28%), Gaps = 22/167 (13%)

Query: 53  SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIP--------------- 97
                ++IG G GG+V A RL++       ++E G   +   +                 
Sbjct: 6   DRVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMW 64

Query: 98  ----LLAHFNSLTHFNWGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRG 153
                    ++   F     +++                  +G+G+GG S++N  +    
Sbjct: 65  LADKTDQPVSNFMGFGINKSIDR--YVGVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTP 122

Query: 154 NKKDYDTYEAAGNKGWGYDSVLKYFLKSENNTSEFLDADIHSREGPL 200
            +  ++    + +    Y+             +        +     
Sbjct: 123 KRNYFEEILPSVDSNEMYNKYFPRANTGLGVNNIDQAWFESTEWYKF 169

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} Length = 367

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

 Score = 84.3 bits (207), Expect = 3e-19
 Identities = 33/245 (13%), Positives = 68/245 (27%), Gaps = 41/245 (16%)

Query: 55  YDFVIIGGGVGGSVVANRLSENPKWKVLLLESG-EDENIYTNIPLLAHFNSLTH------ 107
              V+IG G G +V A RL E    + L+LE G        +  +     +         
Sbjct: 3   VPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFK 61

Query: 108 -----------FNWGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKK 156
                      +        +        +  DQ     G+G+GG S++N  +     + 
Sbjct: 62  NRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRS 121

Query: 157 DYDTYEAAGNKGWGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQNLLTEKFT 216
            ++       +    +   +YF ++ +         +       K               
Sbjct: 122 YFEEIL---PRVDSSEMYDRYFPRANSM--------LRVNHIDTKWFEDTEWYKFARVSR 170

Query: 217 QAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIYDYTGIEPATEGFSKLQSTLSKGQRYS 276
           +             +  L   F     + GY   +  G  P +   +      +   + S
Sbjct: 171 EQAG----------KAGLGTVFVPNVYDFGYMQREAAGEVPKS-ALATEVIYGNNHGKQS 219

Query: 277 ANRAY 281
            ++ Y
Sbjct: 220 LDKTY 224

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

 Score = 80.5 bits (197), Expect = 7e-18
 Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 12/136 (8%)

Query: 54  EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLT-----HF 108
            YD++I+G G GG + A+RLSE  K KVLLLE G      T    +A + + +       
Sbjct: 2   PYDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDI 60

Query: 109 NWGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKG 168
              ++    + +P     +        G  +GG + +N  +Y   N  D+ +        
Sbjct: 61  PGLFESLFTDSNP---FWWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSV---GWP 114

Query: 169 WGYDSVLKYFLKSENN 184
             + +   Y  K  + 
Sbjct: 115 SSWTNHAPYTSKLSSR 130

>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.8 bits (109), Expect = 1e-06
 Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)

Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
          EYD +++G G+   +++  +S N K KVL ++   
Sbjct: 6  EYDVIVLGTGLTECILSGIMSVNGK-KVLHMDRNP 39

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 297

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.0 bits (107), Expect = 2e-06
 Identities = 16/81 (19%), Positives = 32/81 (39%), Gaps = 1/81 (1%)

Query: 54  EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYK 113
           +YD +++G G+   +++  LS + K KVL ++  +          L+        N   K
Sbjct: 5   DYDVIVLGTGITECILSGLLSVDGK-KVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISK 63

Query: 114 LEKNEEHPQCLGMYNDQCPCP 134
            E+  +  +      D  P  
Sbjct: 64  EERESKFGKDRDWNVDLIPKF 84

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

 Score = 45.3 bits (106), Expect = 3e-06
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
          +E D V++G G  G   A  +S+NP  +V ++E   
Sbjct: 32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSV 67

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} Length = 276

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 3/83 (3%)

Query: 53  SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE--DENIYTNIPLLAHFNSLTHFNW 110
             Y+ V+IGGG+ GS +A  L++       L ESG            +L         + 
Sbjct: 3   RHYEAVVIGGGIIGSAIAYYLAKE-NKNTALFESGTMGGRTTSAAAGMLGAHAECEERDA 61

Query: 111 GYKLEKNEEHPQCLGMYNDQCPC 133
            +    + +              
Sbjct: 62  FFDFAMHSQRLYKGLGEELYALS 84

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 223

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 42.5 bits (99), Expect = 2e-05
 Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 54  EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYK 113
           E + +++G G GG V A R ++    KV ++E G    +  N+  +     ++  +   +
Sbjct: 3   ETETLVVGAGPGGYVAAIRAAQL-GQKVTIVEKGNLGGVCLNVGCIPSKALISASHRYEQ 61

Query: 114 LEKNEEHPQC 123
            + +EE    
Sbjct: 62  AKHSEEMGIK 71

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 6/90 (6%)

Query: 52  LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLES----GEDENIYTNIPLLAHFNSLTH 107
           ++ YD+++IGGG GG   A R +E    +  ++ES    G   N+      +    ++ H
Sbjct: 1   VASYDYLVIGGGSGGLASARRAAEL-GARAAVVESHKLGGTCVNVGCVPKKVMWNTAV-H 58

Query: 108 FNWGYKLEKNEEHPQCLGMYNDQCPCPRGK 137
             + +                      R  
Sbjct: 59  SEFMHDHADYGFPSCEGKFNWRVIKEKRDA 88

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} Length = 281

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

 Score = 42.8 bits (99), Expect = 2e-05
 Identities = 8/36 (22%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
          + +D +++G G  G     +L++    K LL+++ +
Sbjct: 2  THFDVIVVGAGSMGMAAGYQLAKQ-GVKTLLVDAFD 36

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 235

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (96), Expect = 4e-05
 Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 2/78 (2%)

Query: 54  EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYK 113
           ++D +IIGGG GG   A   ++    KV++L+      + TN  L               
Sbjct: 3   DFDLIIIGGGSGGLAAAKEAAKF-DKKVMVLDFVTPTPLGTNWGLGGTCV-NVGCIPKKL 60

Query: 114 LEKNEEHPQCLGMYNDQC 131
           + +     Q L    +  
Sbjct: 61  MHQAALLGQALKDSRNYG 78

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} Length = 238

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 41.6 bits (96), Expect = 4e-05
 Identities = 12/86 (13%), Positives = 27/86 (31%), Gaps = 2/86 (2%)

Query: 54  EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDEN--IYTNIPLLAHFNSLTHFNWG 111
            +D V+IG G GG   A   +   K +V +++         ++ +               
Sbjct: 3   IFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVPKKLM 62

Query: 112 YKLEKNEEHPQCLGMYNDQCPCPRGK 137
               +  EH +    +  +      +
Sbjct: 63  VTGAQYMEHLRESAGFGWEFDRTTLR 88

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Length = 251

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

 Score = 41.6 bits (96), Expect = 4e-05
 Identities = 21/135 (15%), Positives = 37/135 (27%), Gaps = 13/135 (9%)

Query: 54  EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED------------ENIYTNIPLLAH 101
            YD ++IGGG  G + A   +E     VLLL+ G               N+   +PL   
Sbjct: 2   HYDVIVIGGGPSGLMAAIGAAEE-GANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEI 60

Query: 102 FNSLTHFNWGYKLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTY 161
              +           +  + + +  + +       +   G                    
Sbjct: 61  VKHIPGNGRFLYSAFSIFNNEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRL 120

Query: 162 EAAGNKGWGYDSVLK 176
           +  G K      V  
Sbjct: 121 KDLGVKIRTNTPVET 135

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

 Score = 41.2 bits (95), Expect = 6e-05
 Identities = 15/116 (12%), Positives = 35/116 (30%), Gaps = 10/116 (8%)

Query: 54  EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYK 113
           ++D ++IG G GG V A + ++    K  L+E  + +   T +                 
Sbjct: 3   KFDVIVIGAGPGGYVAAIKSAQL-GLKTALIEKYKGKEGKTALG---------GTCLNVG 52

Query: 114 LEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGW 169
              ++        +++     +  G+    +   +      K         G    
Sbjct: 53  CIPSKALLDSSYKFHEAHESFKLHGISTGEVAIDVPTMIARKDQIVRNLTGGVASL 108

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} Length = 259

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

 Score = 41.2 bits (95), Expect = 7e-05
 Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 1/83 (1%)

Query: 55  YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYKL 114
           YD ++IGGG GG   A R + +   KV L+E         N+  +         +    L
Sbjct: 2   YDLIVIGGGSGGMAAARRAARH-NAKVALVEKSRLGGTCVNVGCVPKKIMFNAASVHDIL 60

Query: 115 EKNEEHPQCLGMYNDQCPCPRGK 137
           E +  +        +       +
Sbjct: 61  ENSRHYGFDTKFSFNLPLLVERR 83

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} Length = 240

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

 Score = 40.7 bits (94), Expect = 8e-05
 Identities = 13/84 (15%), Positives = 24/84 (28%), Gaps = 2/84 (2%)

Query: 54  EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYK 113
            YD V+IG G GG       +   K +V +++  +         L      +       K
Sbjct: 3   AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPHYAALGGT--CVNVGCVPKK 60

Query: 114 LEKNEEHPQCLGMYNDQCPCPRGK 137
           L     +       +        +
Sbjct: 61  LMVTGANYMDTIRESAGFGWELDR 84

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} Length = 229

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

 Score = 39.9 bits (92), Expect = 2e-04
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
          +EYD V++GGG GG   A   ++    KV ++E  +
Sbjct: 5  AEYDVVVLGGGPGGYSAAFAAADE-GLKVAIVERYK 39

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 220

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
          +   +IIGGG GG V A R  +      +L+E   
Sbjct: 5  QTTLLIIGGGPGGYVAAIRAGQL-GIPTVLVEGQA 38

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} Length = 217

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
           YD++ IGGG GG    NR +     K  L+E+ E
Sbjct: 2  HYDYIAIGGGSGGIASINRAAMY-GQKCALIEAKE 35

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 221

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
          E D VIIGGG GG V A + ++   +K   +E   
Sbjct: 3  ENDVVIIGGGPGGYVAAIKAAQL-GFKTTCIEKRG 36

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} Length = 380

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 13/40 (32%), Positives = 16/40 (40%), Gaps = 5/40 (12%)

Query: 54 EYDFVIIGGGVGGSVVANRLS-----ENPKWKVLLLESGE 88
          E D VI+G G  G   A RL           +V L+E   
Sbjct: 32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAA 71

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 39.4 bits (91), Expect = 3e-04
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)

Query: 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLES 86
          YD++I+G G+ G+V AN L +    KVL++E 
Sbjct: 2  YDYIIVGSGLFGAVCANELKKL-NKKVLVIEK 32

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

 Score = 39.4 bits (90), Expect = 3e-04
 Identities = 10/34 (29%), Positives = 17/34 (50%)

Query: 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
             VIIG G+ G+ +A+ L       + +L+ G 
Sbjct: 2  PRIVIIGAGIVGTNLADELVTRGWNNITVLDQGP 35

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 233

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (89), Expect = 4e-04
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
           +D VIIGGG  G V A + ++   +    +E   
Sbjct: 5  SHDVVIIGGGPAGYVAAIKAAQL-GFNTACVEKRG 38

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 308

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 38.9 bits (89), Expect = 4e-04
 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG 87
            D V++G G  G   A   +++   KV+L+E  
Sbjct: 16 TVDVVVVGSGGAGFSAAISATDSGA-KVILIEKE 48

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 38.6 bits (88), Expect = 5e-04
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89
          D +I G G+GG   A  L +    KV LLES  +
Sbjct: 3  DILIAGAGIGGLSCALALHQAGIGKVTLLESSSE 36

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

 Score = 38.0 bits (86), Expect = 8e-04
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
            +++G G+ G   A RLSE     +L+LE+ +
Sbjct: 2  RVIVVGAGMSGISAAKRLSEAGITDLLILEATD 34

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Length = 253

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

 Score = 37.6 bits (86), Expect = 0.001
 Identities = 9/35 (25%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89
           + +IIG G  G   A +L++     V + ++G+ 
Sbjct: 5  SENIIIGAGAAGLFCAAQLAKL-GKSVTVFDNGKK 38

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} Length = 322

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

 Score = 37.7 bits (86), Expect = 0.001
 Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)

Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG 87
            D VIIG G  G   A    +    KV+LLE  
Sbjct: 23 TTDVVIIGSGGAGLAAAVSARDAGA-KVILLEKE 55

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} Length = 261

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

 Score = 37.2 bits (85), Expect = 0.001
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED 89
          EYD + IGGG  G   +  L      + L+++    
Sbjct: 42 EYDAIFIGGGAAGRFGSAYLRAMGG-RQLIVDRWPF 76

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 37.4 bits (85), Expect = 0.001
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
          +  ++GGG+ G  VA+ L        +LLES  
Sbjct: 2  NVAVVGGGISGLAVAHHLRSRG-TDAVLLESSA 33

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} Length = 305

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

 Score = 36.8 bits (84), Expect = 0.002
 Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG 87
            D +IIG G  G  +A RL++    +V++L  G
Sbjct: 7  SCDVLIIGSGAAGLSLALRLADQH--QVIVLSKG 38

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.8 bits (84), Expect = 0.002
 Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 53 SEYDFVIIGGGVGGSVVANRLSE-NPKWKVLLLESGE 88
          +  D +I+G G  G   A  +++  P  KV ++ES  
Sbjct: 49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSV 85

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (84), Expect = 0.002
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
          D V++GGG+ G   A  L ++    V++LE+ +
Sbjct: 1  DVVVVGGGISGMAAAKLLHDS-GLNVVVLEARD 32

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 13/46 (28%), Positives = 19/46 (41%)

Query: 53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPL 98
          S   F++IGGG      A  +        +L+ S + E  Y   PL
Sbjct: 3  SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPL 48

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} Length = 311

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 54 EYDFVIIGGGVGGSVVANRLSE-NPKWKVLLLE 85
          + D  I+G G  G   A   ++ NP  K+ L+ 
Sbjct: 5  QADLAIVGAGGAGLRAAIAAAQANPNAKIALIS 37

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} Length = 360

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 4/37 (10%)

Query: 53 SEYDFVIIGGGVGGSVVANRLSENPK----WKVLLLE 85
          S  D +I+G G  G + A  LSE  +     KV +++
Sbjct: 6  SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIID 42

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} Length = 317

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

 Score = 36.1 bits (82), Expect = 0.003
 Identities = 5/34 (14%), Positives = 13/34 (38%), Gaps = 1/34 (2%)

Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG 87
              +++G G  G   +    +     V+L++  
Sbjct: 19 TTQVLVVGAGSAGFNASLAAKKAGA-NVILVDKA 51

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} Length = 336

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

 Score = 35.9 bits (81), Expect = 0.004
 Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 1/34 (2%)

Query: 54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG 87
            D ++IGGG+ G   A    +      ++L   
Sbjct: 5  YCDSLVIGGGLAGLRAAVATQQKGL-STIVLSLI 37

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 356

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 35.7 bits (81), Expect = 0.004
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 3/37 (8%)

Query: 54 EYDFVIIGGGVGGSVVANRLSENPKW---KVLLLESG 87
          E D +IIGGG  G   A   +   K    KV L+E  
Sbjct: 21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKA 57

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 35.9 bits (81), Expect = 0.004
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 39 EFRENIFLGNKPILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE 88
          EF E    G K   +    VI+G G+ G   A  L+     +V +LE+ E
Sbjct: 15 EFLEIARNGLKATSNPKHVVIVGAGMAGLSAAYVLAGAG-HQVTVLEASE 63

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	284
d1gpea1	391	Glucose oxidase {Penicillium amagasakiense [TaxId:	100.0
d1cf3a1	385	Glucose oxidase {Aspergillus niger [TaxId: 5061]}	100.0
d1kdga1	360	Flavoprotein domain of flavocytochrome cellobiose	99.97
d1ju2a1	351	Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI	99.96
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	99.89
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	99.87
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	99.49
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	98.81
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	98.81
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	98.38
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	98.34
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	98.33
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	98.31
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	98.31
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	98.28
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	98.28
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	98.24
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	98.24
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	98.23
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	98.21
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	98.2
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	98.2
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	98.19
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	98.17
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	98.16
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	98.15
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	98.14
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	98.12
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	98.11
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	98.1
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	98.1
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	98.02
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	98.0
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	97.98
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	97.96
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	97.96
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	97.95
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	97.95
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	97.92
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	97.92
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	97.91
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	97.91
d1aoga1	238	Trypanothione reductase {Trypanosoma cruzi [TaxId:	97.87
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	97.84
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	97.79
d2cula1	230	GidA-related protein TTHA1897 {Thermus thermophilu	97.79
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	97.79
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	97.72
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	97.69
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	97.69
d1feca1	240	Trypanothione reductase {Crithidia fasciculata [Ta	97.68
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	97.64
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	97.63
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	97.62
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	97.6
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	97.55
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	97.43
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	97.3
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	97.23
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	97.14
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.1
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.86
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	96.65
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	96.58
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	96.49
d1fcda1	186	Flavocytochrome c sulfide dehydrogenase, FCSD, fla	96.39
d1xhca2	122	NADH oxidase /nitrite reductase {Pyrococcus furios	96.38
d1d7ya2	121	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	96.35
d1m6ia1	213	Apoptosis-inducing factor (AIF) {Human (Homo sapie	96.27
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	96.19
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.17
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	96.12
d1q1ra1	185	Putidaredoxin reductase {Pseudomonas putida [TaxId	96.1
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	96.1
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	96.05
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	96.0
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	95.56
d1xhca1	167	NADH oxidase /nitrite reductase {Pyrococcus furios	95.53
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	95.44
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.42
d1mo9a2	121	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	95.23
d1nhpa1	198	NADH peroxidase {Enterococcus faecalis [TaxId: 135	95.22
d1d7ya1	183	NADH-dependent ferredoxin reductase, BphA4 {Pseudo	94.81
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	94.73
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.68
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	94.54
d1e5qa1	182	Saccharopine reductase {Rice blast fungus (Magnapo	94.29
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	94.24
d1h6va2	122	Mammalian thioredoxin reductase {Rat (Rattus norve	94.09
d1bg6a2	184	N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A	93.9
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	93.82
d1ks9a2	167	Ketopantoate reductase PanE {Escherichia coli [Tax	93.66
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	93.65
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	93.42
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	92.15
d2gv8a2	107	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	91.41
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	89.26
d1djqa2	156	Trimethylamine dehydrogenase, C-terminal domain {M	88.88
d1gtea3	153	Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su	88.3
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	87.94
d1n1ea2	189	Glycerol-3- phosphate dehydrogenase {Trypanosome (	86.92
d1mv8a2	202	GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos	85.95
d1txga2	180	Glycerol-3- phosphate dehydrogenase {Archaeoglobus	85.61
d1id1a_	153	Rck domain from putative potassium channel Kch {Es	85.48
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	85.43
d1jaya_	212	Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae	85.39
d1kyqa1	150	Bifunctional dehydrogenase/ferrochelatase Met8p, N	85.31
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	85.24
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	83.98
d2dt5a2	126	Transcriptional repressor Rex, C-terminal domain {	81.54
d1vdca2	130	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	80.74

>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Penicillium amagasakiense [TaxId: 63559]

Probab=100.00  E-value=1.9e-38  Score=298.86  Aligned_cols=203  Identities=29%  Similarity=0.426  Sum_probs=169.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCccc---cccccccccccccCCcccccccccCCCCCccccCCCC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDEN---IYTNIPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYN  128 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~---~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~  128 (284)
                      .++|||||||+|++||++|.||+|+++.+|||||||+...   ...++|........+.+||+|.++|+.        ++
T Consensus        22 ~~tyD~IIVGsG~aG~vlA~rLae~~~~~VLlLEaG~~~~~~~~~~~~p~~~~~~~~~~~dw~~~t~p~~--------~~   93 (391)
T d1gpea1          22 GKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGTTVDQNYLTVPLI--------NN   93 (391)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHTSTTCCEEEEESSCCCTTSCHHHHCGGGTTTTTTSTTBCCEECCCCT--------TS
T ss_pred             CCeeeEEEECcCHHHHHHHHHHHHCCCCeEEEEcCCCCCCCCCceeeCHHHHHHhhCCCcccCceeeecC--------CC
Confidence            4579999999999999999999997668999999998653   334677766666678899999998864        57


Q ss_pred             CCcccCcccccCCccccccccccCCChhhHHHHHhc-CCCCCChhhHHHHHHHHhhccCCC---------CCCCCCCccc
Q psy4112         129 DQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAA-GNKGWGYDSVLKYFLKSENNTSEF---------LDADIHSREG  198 (284)
Q Consensus       129 ~~~~~~rGk~lGGsS~iN~~~~~R~~~~D~d~W~~~-G~~gW~~~~l~pyf~k~E~~~~~~---------~~~~~hG~~G  198 (284)
                      +.+.+++||+|||||+||+|+|+|+++.||+.|.+. |+++|+|++++|||+|+|++..+.         .+...|+..|
T Consensus        94 r~~~~~~G~~lGGsS~in~~~~~rg~~~d~~~w~~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~~~~~~~~~~~g~~~  173 (391)
T d1gpea1          94 RTNNIKAGKGLGGSTLINGDSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTNG  173 (391)
T ss_dssp             CCCEECCBCSTTGGGGTSCCEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEECCCCHHHHHHTCCCCGGGCCBSS
T ss_pred             cEeeeceeeccCcccceeeeEEeeccccccccccccCCCCccccchhHHHHHHhhhccCCcchhcccccCccccccCCCC
Confidence            888999999999999999999999999999999876 899999999999999999987653         4567899999


Q ss_pred             CceeecCCcchhhhhhhhcccCCCCcccCCcccchHHHHHHHHHHHcCCCcc-CCCCCCCCCccccccccccc-CCcccc
Q psy4112         199 PLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLS-KGQRYS  276 (284)
Q Consensus       199 pl~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~A~~~lG~~~~-D~n~~~~~~~G~~~~~~ti~-~G~R~s  276 (284)
                      ++++.....                    .....++.+.|.++++++|++.. +++++..  .|++..+.++. ++.|.+
T Consensus       174 ~~~~~~~~~--------------------~~~~~p~~~~~~~a~~~~G~~~~~~~~~g~~--~~~~~~~~~~~~~~~r~s  231 (391)
T d1gpea1         174 TVQSGARDN--------------------GQPWSPIMKALMNTVSALGVPVQQDFLCGHP--RGVSMIMNNLDENQVRVD  231 (391)
T ss_dssp             SEEEBCCCC--------------------SSCBCTHHHHHHHHHHHTTCCBSCCTTSSCC--CEEECCEESBCTTCCBCC
T ss_pred             ccccccccc--------------------ccccCHHHHHHHHHHHhcCCceeeccccCcc--cccccccceeeccccccc
Confidence            998875433                    01156889999999999999987 6887777  66666555554 668888


Q ss_pred             hhhhccCC
Q psy4112         277 ANRAYLKS  284 (284)
Q Consensus       277 a~~ayL~~  284 (284)
                      ++.+|+.+
T Consensus       232 ~a~~~~~p  239 (391)
T d1gpea1         232 AARAWLLP  239 (391)
T ss_dssp             HHHHHTTT
T ss_pred             hhhhccCc
Confidence            88888753

>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glucose oxidase
species: Aspergillus niger [TaxId: 5061]

Probab=100.00  E-value=4.2e-38  Score=295.40  Aligned_cols=203  Identities=28%  Similarity=0.389  Sum_probs=166.4

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCccc---cccccccccccccCCcccccccccCCCCCccccCCCC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDEN---IYTNIPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYN  128 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~---~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~  128 (284)
                      .++|||||||+|++||++|.||+|+++++|||||+|+...   +..+.|.....+..+.++|.|.++++       .+++
T Consensus        15 ~~tyD~IIVGsG~aG~vlA~rLse~~~~~VLvLEaG~~~~~~~~~~~~~~~~~~~~~~~~dw~~~t~~~-------~~~~   87 (385)
T d1cf3a1          15 GRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYGDIFGSSVDHAYETVEL-------ATNN   87 (385)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHTTSTTCCEEEEESSCCCTTSCHHHHBGGGTTTTTTSTTBCCEECCCC-------TTTS
T ss_pred             CCeEEEEEECcCHHHHHHHHHHHHCCCCeEEEECCCCCCCCCCccccCHhHHhhhcCCCCCcCccccCc-------CCCC
Confidence            4579999999999999999999998779999999998643   23345555555566789999988765       4678


Q ss_pred             CCcccCcccccCCccccccccccCCChhhHHHHHhc-CCCCCChhhHHHHHHHHhhccCCC---------CCCCCCCccc
Q psy4112         129 DQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAA-GNKGWGYDSVLKYFLKSENNTSEF---------LDADIHSREG  198 (284)
Q Consensus       129 ~~~~~~rGk~lGGsS~iN~~~~~R~~~~D~d~W~~~-G~~gW~~~~l~pyf~k~E~~~~~~---------~~~~~hG~~G  198 (284)
                      +.+.+++||+|||||+||+|+|+|+++.|||.|+++ ++++|+|++|+|||+|+|++.++.         .+...||..+
T Consensus        88 r~~~~~~G~~lGGsS~in~~~~~R~~~~d~d~w~~~~~~~gw~~~~l~Pyf~k~E~~~~~~~~~~~~~~~~~~~~~g~~~  167 (385)
T d1cf3a1          88 QTALIRSGNGLGGSTLVNGGTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVNG  167 (385)
T ss_dssp             CCCEECCBCSTTGGGGTSCCBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEECCCCHHHHHHTCCCCGGGSCSSS
T ss_pred             ceeeecccccccccceeeeeeeeccChhhhcccccccCCCcCchhhhHHHHHHHHhhcCCCcccccccccccccccCCcc
Confidence            899999999999999999999999999999999988 889999999999999999987764         3556788899


Q ss_pred             CceeecCCcchhhhhhhhcccCCCCcccCCcccchHHHHHHHHHHHcCCCcc-CCCCCCCCCccccccccccc-CCcccc
Q psy4112         199 PLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLS-KGQRYS  276 (284)
Q Consensus       199 pl~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~A~~~lG~~~~-D~n~~~~~~~G~~~~~~ti~-~G~R~s  276 (284)
                      ++.+.....                    .....++.+.|.++++++|++.. |+|+...  .|++.++.++. .+.|++
T Consensus       168 ~~~~~~~~~--------------------~~~~~p~~~~~~~a~~~~G~~~~~d~n~~~~--~~~~~~~~~~~~~~~~~~  225 (385)
T d1cf3a1         168 TVHAGPRDT--------------------GDDYSPIVKALMSAVEDRGVPTKKDFGCGDP--HGVSMFPNTLHEDQVRSD  225 (385)
T ss_dssp             SEEEBCCCC--------------------SSCBCTHHHHHHHHHHTTTCCBCCCTTSSCC--CEEECCCBSBCTTCBBCC
T ss_pred             ccccccccc--------------------ccccCHHHHHHHHHHHHcCCCCcCCcccccc--cccccccccccccccchh
Confidence            988765433                    11256899999999999999986 8998887  77666666555 456666


Q ss_pred             hhhhccC
Q psy4112         277 ANRAYLK  283 (284)
Q Consensus       277 a~~ayL~  283 (284)
                      ++.+|+.
T Consensus       226 s~~~~~~  232 (385)
T d1cf3a1         226 AAREWLL  232 (385)
T ss_dssp             HHHHHTG
T ss_pred             hhhhhcC
Confidence            7777764

>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain
species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]

Probab=99.97  E-value=7.4e-32  Score=250.68  Aligned_cols=184  Identities=24%  Similarity=0.311  Sum_probs=139.3

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcccccc----ccccccc-cccC---CcccccccccCCCCCccccC
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYT----NIPLLAH-FNSL---THFNWGYKLEKNEEHPQCLG  125 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~~~~----~~p~~~~-~~~~---~~~~w~~~~~p~~~~~~~~~  125 (284)
                      .|||||||+|++||++|.||+| ++.+|||||+|+......    ..|.... ....   ....|.+.+.++.      .
T Consensus         2 ~YD~IIVGsG~aG~v~A~rLae-~g~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~   74 (360)
T d1kdga1           2 PYDYIIVGAGPGGIIAADRLSE-AGKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKFDIPGLFESLFTDSNP------F   74 (360)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSCCCSGGGTCCCCCGGGGGGTCCTTTCGGGGGGGGTCSCC------T
T ss_pred             cCCEEEECcCHHHHHHHHHHhh-CCCeEEEEEccCCCCcccccccccchhhccCcccccCcccccccccCCCc------c
Confidence            5999999999999999999999 489999999997553211    1111111 1111   2234566677776      5


Q ss_pred             CCCCCcccCcccccCCccccccccccCCChhhHHHHHhcCCCCC--ChhhHHHHHHHHhhccCCCCCCCCCCcccCceee
Q psy4112         126 MYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGW--GYDSVLKYFLKSENNTSEFLDADIHSREGPLKVT  203 (284)
Q Consensus       126 ~~~~~~~~~rGk~lGGsS~iN~~~~~R~~~~D~d~W~~~G~~gW--~~~~l~pyf~k~E~~~~~~~~~~~hG~~Gpl~v~  203 (284)
                      +.++.+.+++||+|||||+||+|+|+|+++.||+.|.     +|  +|++++|||+|+|+.++.   ...|+.+|++.+ 
T Consensus        75 ~~~~~~~~~~G~~lGGsS~in~~~~~r~~~~D~~~~~-----gwp~~~~~l~py~~~~e~~~~~---~~~~~~~g~~~~-  145 (360)
T d1kdga1          75 WWCKDITVFAGCLVGGGTSVNGALYWYPNDGDFSSSV-----GWPSSWTNHAPYTSKLSSRLPS---TDHPSTDGQRYL-  145 (360)
T ss_dssp             TBCTTBSSCCBCSTTGGGGTSCCBCCCCCGGGGCGGG-----TCCGGGSCCHHHHHHHHHHSCC---BSCCSTTSCCCS-
T ss_pred             cCCccccccceeeecchhccccccccccchhhheecc-----cccccccchhhhhhhhhccccc---cceecCCCcccc-
Confidence            6778899999999999999999999999999999884     45  899999999999998774   345666666532 


Q ss_pred             cCCcchhhhhhhhcccCCCCcccCCcccchHHHHHHHHHHHcCCCcc---CCCCCCCCCcccccccccccCCcccchhhh
Q psy4112         204 NIPYQNLLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIY---DYTGIEPATEGFSKLQSTLSKGQRYSANRA  280 (284)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~A~~~lG~~~~---D~n~~~~~~~G~~~~~~ti~~G~R~sa~~a  280 (284)
                                                  .+....+.++++++|+...   |.++...  .|++.++.+|.+|.|+|+.++
T Consensus       146 ----------------------------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--~~~g~~~~~~~~G~R~s~~~~  195 (360)
T d1kdga1         146 ----------------------------EQSFNVVSQLLKGQGYNQATINDNPNYKD--HVFGYSAFDFLNGKRAGPVAT  195 (360)
T ss_dssp             ----------------------------CHHHHHHHHHHHTTTCEECCGGGSTTCCT--TEEEECCBCEETTEECHHHHT
T ss_pred             ----------------------------cchhHHHHHHHHHhhccCCCcccCCCccc--cccceeeeeccccccccccch
Confidence                                        2344566777788887653   4555444  677778889999999999999


Q ss_pred             ccC
Q psy4112         281 YLK  283 (284)
Q Consensus       281 yL~  283 (284)
                      ||.
T Consensus       196 yl~  198 (360)
T d1kdga1         196 YLQ  198 (360)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            985

>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Hydroxynitrile lyase
species: Almond (Prunus dulcis) [TaxId: 3755]

Probab=99.96  E-value=1.9e-30  Score=240.57  Aligned_cols=180  Identities=28%  Similarity=0.328  Sum_probs=135.4

Q ss_pred             CCCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCccccccccccccccccCCcccccccccCCCCCccccCCCCC
Q psy4112          50 PILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLAHFNSLTHFNWGYKLEKNEEHPQCLGMYND  129 (284)
Q Consensus        50 ~~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~  129 (284)
                      ++..+|||||||||++|+++|.||+|  +.+|||||+|+.+.....++...........+|.+.+.++.      .+.++
T Consensus        22 ~~~~~YD~IIVGsG~aG~vlA~rLae--~~kVLvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~   93 (351)
T d1ju2a1          22 ELEGSYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDDGKTPVER------FVSED   93 (351)
T ss_dssp             CSEEEEEEEEECCSTTHHHHHHHHTT--TSCEEEECSSBCGGGSGGGGBGGGHHHHHHSCCCSSSSEEE------EECTT
T ss_pred             cccCCccEEEECccHHHHHHHHHhcC--CCCEEEEecCCCCcCccccccchhhhccCcCCCCCCCcccc------ccCCC
Confidence            45667999999999999999999998  38999999998653322222221111122345555666665      56678


Q ss_pred             CcccCcccccCCccccccccccCCChhhHHHHHhcCCCCCChhhHHHHHHHHhhccCCCCCCCCCCcccCceeecCCcch
Q psy4112         130 QCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGYDSVLKYFLKSENNTSEFLDADIHSREGPLKVTNIPYQN  209 (284)
Q Consensus       130 ~~~~~rGk~lGGsS~iN~~~~~R~~~~D~d~W~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~hG~~Gpl~v~~~~~~~  209 (284)
                      .+.+++||+|||||+||+|+|+|+++.|||.|    ..+|+|+++.|||+++|+.....                 +.  
T Consensus        94 ~~~~~rG~~lGGsS~in~~~~~R~~~~dfd~~----~~~W~~~~~~p~~~~~e~~~~~~-----------------~~--  150 (351)
T d1ju2a1          94 GIDNVRGRVLGGTSIINAGVYARANTSIYSAS----GVDWDMDLVNQTYEWVEDTIVYK-----------------PN--  150 (351)
T ss_dssp             SCEEEEECBTTGGGGTSCCEECBCCTTSSTTS----SSCCCHHHHHHHHHHHHHHHCBC-----------------CC--
T ss_pred             ceeeeeeeecccccccceeeeccCCHHHHhhc----ccccChhHhCcceeecccccccc-----------------cc--
Confidence            89999999999999999999999999999998    47899999999999999864421                 01  


Q ss_pred             hhhhhhhcccCCCCcccCCcccchHHHHHHHHHHHcCCCcc-CCCCCCCCCcccccccccccCCcccchhhhccC
Q psy4112         210 LLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIY-DYTGIEPATEGFSKLQSTLSKGQRYSANRAYLK  283 (284)
Q Consensus       210 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~A~~~lG~~~~-D~n~~~~~~~G~~~~~~ti~~G~R~sa~~ayL~  283 (284)
                                           .......+.+++.+.|++.. |+|....  .++.....+++++.|+++..+||.
T Consensus       151 ---------------------~~~~~~~~~~a~~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~s~~~~~l~  202 (351)
T d1ju2a1         151 ---------------------SQSWQSVTKTAFLEAGVHPNHGFSLDHE--EGTRITGSTFDNKGTRHAADELLN  202 (351)
T ss_dssp             ---------------------CCHHHHHHHHHHHHTTCCCEEEECCBCC--SEEEECEESBCTTSBBCCGGGGGG
T ss_pred             ---------------------cccccccccchhhhhccccccccccccc--cccccccccccCCCcccccchhhc
Confidence                                 12344556677788898876 6776665  566666778888888888888885

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=99.89  E-value=2.3e-23  Score=191.72  Aligned_cols=195  Identities=14%  Similarity=0.134  Sum_probs=127.7

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcccccccccccc-cc------------------ccCCcccccc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYTNIPLLA-HF------------------NSLTHFNWGY  112 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~~~~~~p~~~-~~------------------~~~~~~~w~~  112 (284)
                      .++||+||||||++|+++|.+|+| ++++|||||+|.........+... ..                  .....+.|.+
T Consensus         5 ~~~~dvIVVGsG~aG~v~A~rLae-aG~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (370)
T d3coxa1           5 GDRVPALVIGSGYGGAVAALRLTQ-AGIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWLADKTDQPVSNFMGFGINK   83 (370)
T ss_dssp             TCEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSCCSCSCCTTSCSSCCSSSCCTTSBBSCSBCCCSSCSBTTBSCCC
T ss_pred             CCCCCEEEECcCHHHHHHHHHHHH-CCCeEEEEeCCCCCCCcccccccccccccccccccccccccccccccccccccCc
Confidence            568999999999999999999999 699999999997542111110000 00                  0001223333


Q ss_pred             cccCCCCCccccCCCCCCcccCcccccCCccccccccccCCChhhHHHHHhcCCCCCChhhHHHHHHHHhhccCCCCCCC
Q psy4112         113 KLEKNEEHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGYDSVLKYFLKSENNTSEFLDAD  192 (284)
Q Consensus       113 ~~~p~~~~~~~~~~~~~~~~~~rGk~lGGsS~iN~~~~~R~~~~D~d~W~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~  192 (284)
                      .+.+..  ........+.+.+++|++|||+|.+|++++.|+++.||+.|..   ..+.++++.|||+++|+..++..   
T Consensus        84 ~~~~~~--~~~~~~~~~~~~~~~g~~vGG~S~~~~~~~~r~~~~df~~~~~---~~~~~~~~~~~y~~~e~~lgv~~---  155 (370)
T d3coxa1          84 SIDRYV--GVLDSERFSGIKVYQGRGVGGGSLVNGGMAVTPKRNYFEEILP---SVDSNEMYNKYFPRANTGLGVNN---  155 (370)
T ss_dssp             BCCCCB--CSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCT---TSCHHHHHHTHHHHHHHHHTCBC---
T ss_pred             cccccc--ccccccCCCcceeeeeccccccccccCceeccCCHHHhhcccc---cCCcHHHHHHHHHHHHHhcCCcc---
Confidence            333322  2222334566778899999999999999999999999999953   33457889999999999877531   


Q ss_pred             CCCcccCceeecCCcchhhhhhhhcccCCCCcccCCcccchHHHHHHHHHHHcCCCcc------CCC------CCCCCCc
Q psy4112         193 IHSREGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIY------DYT------GIEPATE  260 (284)
Q Consensus       193 ~hG~~Gpl~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~A~~~lG~~~~------D~n------~~~~~~~  260 (284)
                           .+......+.                       ..++.+.+.++++++|++..      +++      .+...|.
T Consensus       156 -----~~~~~~~~~~-----------------------~~~~~~~~~~~a~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~  207 (370)
T d3coxa1         156 -----IDQAWFESTE-----------------------WYKFARTGRKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKS  207 (370)
T ss_dssp             -----CCHHHHHHCG-----------------------GGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSCCS
T ss_pred             -----ccCCcccCCC-----------------------CccHHHHHHHHHHHcCCccccccccccccccccccccccccc
Confidence                 0101111111                       45688899999999998653      111      0111223


Q ss_pred             ccccccccccCCcccchhhhccC
Q psy4112         261 GFSKLQSTLSKGQRYSANRAYLK  283 (284)
Q Consensus       261 G~~~~~~ti~~G~R~sa~~ayL~  283 (284)
                      .++.+...+.++.|.|+..+||.
T Consensus       208 ~~~~~~~~~~~~~k~s~~~~~L~  230 (370)
T d3coxa1         208 GLGGEVIYGNNAGKKSLDKTYLA  230 (370)
T ss_dssp             TTTTCSTTCCSSSBCCGGGTHHH
T ss_pred             eecccccccccccccChHHHHHH
Confidence            34444456678889999998874

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=99.87  E-value=1.2e-22  Score=186.39  Aligned_cols=194  Identities=18%  Similarity=0.120  Sum_probs=121.9

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcccccc-ccccccccc-cCCccccccc--ccCCC-----------
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIYT-NIPLLAHFN-SLTHFNWGYK--LEKNE-----------  118 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~~~~-~~p~~~~~~-~~~~~~w~~~--~~p~~-----------  118 (284)
                      .+||||||||++|+++|.||+| ++++|||||+|....... ..+...... ......|...  ..+..           
T Consensus         2 ~v~VIVVGsG~aG~v~A~rLae-aG~~VlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (367)
T d1n4wa1           2 YVPAVVIGTGYGAAVSALRLGE-AGVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFKNRTEAPLGSFLWLDVVNRN   80 (367)
T ss_dssp             EEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSCCCCCCCTTSSSSCCTTSCCGGGSBSCSBCCCCTTCHHHHGGGCCB
T ss_pred             cCeEEEeCcCHHHHHHHHHHHH-CcCeEEEEecCCCCCCccccccccccccccccccccccccccccccccccccCCCcc
Confidence            3799999999999999999999 699999999997543211 111110000 0111122111  11100           


Q ss_pred             ---CCccccCCCCCCcccCcccccCCccccccccccCCChhhHHHHHhcCCCCCChhhHHHHHHHHhhccCCCCCCCCCC
Q psy4112         119 ---EHPQCLGMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAGNKGWGYDSVLKYFLKSENNTSEFLDADIHS  195 (284)
Q Consensus       119 ---~~~~~~~~~~~~~~~~rGk~lGGsS~iN~~~~~R~~~~D~d~W~~~G~~gW~~~~l~pyf~k~E~~~~~~~~~~~hG  195 (284)
                         ..........+.+.+++|++|||+|.+|++++.|+++.||+.|..   ..|.+++|.|||+++|+.+++...     
T Consensus        81 ~~~~~g~~~~~~~~~~~~~~g~~lGG~S~i~~~~~~r~~~~~f~~~~~---~~~~~~~l~pyy~~ae~~l~~~~~-----  152 (367)
T d1n4wa1          81 IDPYAGVLDRVNYDQMSVYVGRGVGGGSLVNGGMAVEPKRSYFEEILP---RVDSSEMYDRYFPRANSMLRVNHI-----  152 (367)
T ss_dssp             CCCCBCSEEEEECSSCEEEEECSTTGGGGTSCCBCCCCCHHHHHHHCT---TSCHHHHHHTHHHHHHHHHTCBCC-----
T ss_pred             cccccCccccccCCccceeeEEecCCCCceecceeeccChhHhhcccc---ccCcHHHHHHHHHHHHHHhCCCCC-----
Confidence               000011223456678899999999999999999999999999943   344678999999999999876310     


Q ss_pred             cccCceeecCCcchhhhhhhhcccCCCCcccCCcccchHHHHHHHHHHHcCCCcc--C-----------CCCCCCCCccc
Q psy4112         196 REGPLKVTNIPYQNLLTEKFTQAKEGPLKVTNIPYQNLLTEKFTQAACELGYRIY--D-----------YTGIEPATEGF  262 (284)
Q Consensus       196 ~~Gpl~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~A~~~lG~~~~--D-----------~n~~~~~~~G~  262 (284)
                         |........                       ..+..+.+.+++.++|+...  +           .++... ++.+
T Consensus       153 ---~~~~~~~~~-----------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~-~~~~  205 (367)
T d1n4wa1         153 ---DTKWFEDTE-----------------------WYKFARVSREQAGKAGLGTVFVPNVYDFGYMQREAAGEVP-KSAL  205 (367)
T ss_dssp             ---CHHHHHHCG-----------------------GGHHHHHHHHHHHHTTCCEEECCBSBCHHHHHHHHTTSSC-CSGG
T ss_pred             ---CCCccccCC-----------------------CChHHHHHHHHHHHcCcccccccchhhcCCcccccccccC-cccc
Confidence               100000000                       34667888899999998653  1           112222 2333


Q ss_pred             ccccccccCCcccchhhhccC
Q psy4112         263 SKLQSTLSKGQRYSANRAYLK  283 (284)
Q Consensus       263 ~~~~~ti~~G~R~sa~~ayL~  283 (284)
                      +.....+.++.|.|+..+||.
T Consensus       206 ~g~~~~~~~~~k~s~~~~yl~  226 (367)
T d1n4wa1         206 ATEVIYGNNHGKQSLDKTYLA  226 (367)
T ss_dssp             GTCSTTCCSSSBCCTTTTHHH
T ss_pred             cccccccccccccChhHhhhH
Confidence            333345667788999888874

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=99.49  E-value=6.7e-15  Score=132.89  Aligned_cols=134  Identities=16%  Similarity=0.123  Sum_probs=78.6

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCccccc--cccccccccc-----------cCCcccccccccCCC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDENIY--TNIPLLAHFN-----------SLTHFNWGYKLEKNE  118 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~~~--~~~p~~~~~~-----------~~~~~~w~~~~~p~~  118 (284)
                      ..+|||||||||++|+++|.+|++ ++++|||||+|+.....  ...+......           ......+.+...+..
T Consensus         2 d~~yDviIVGsG~aG~v~A~~La~-~G~kVlvLEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (379)
T d2f5va1           2 DIKYDVVIVGSGPIGCTYARELVG-AGYKVAMFDIGEIDSGLKIGAHKKNTVEYQKNIDKFVNVIQGQLMSVSVPVNTLV   80 (379)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSCCCSSSSTTCCTTCSHHHHHCGGGHHHHHHHTCEESCCCCCCCC
T ss_pred             CCcccEEEECcCHHHHHHHHHHhh-CCCeEEEEecCCCCCCcccccchhhcccccccccccccccccccccccccccccc
Confidence            468999999999999999999999 69999999999865321  1111000000           000000000000000


Q ss_pred             -----------CCcccc-------CCCCCCcccCcccccCCccccccccccCCChhhHHHHHhcC----CCCC--ChhhH
Q psy4112         119 -----------EHPQCL-------GMYNDQCPCPRGKGLGGSSILNYMIYTRGNKKDYDTYEAAG----NKGW--GYDSV  174 (284)
Q Consensus       119 -----------~~~~~~-------~~~~~~~~~~rGk~lGGsS~iN~~~~~R~~~~D~d~W~~~G----~~gW--~~~~l  174 (284)
                                 .+....       ........+.+++.+||+|.+|.+++.|..+.||+.|...+    ...|  .|+++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gg~~~~~~~~~~r~~~~d~~~~~~~~~~~~~~~~~~~~~~~  160 (379)
T d2f5va1          81 VDTLSPTSWQASTFFVRNGSNPEQDPLRNLSGQAVTRVVGGMSTHWTCATPRFDREQRPLLVKDDADADDAEWDRLYTKA  160 (379)
T ss_dssp             CCCSCTTSCCCSSCCCCTTCCTTCCTTSCCTTCEECCSTTGGGGTCCCBCCCCCGGGSCCSSSSCHHHHHHHHHHHHHHH
T ss_pred             ccCCCCCCccCCCeEeccCCCchhhhhhccccchhhhcCCCCccccccEeccCCHHHhhhccccCCCccCCcCccchhhh
Confidence                       000000       00011123456789999999999999999999997764421    1224  56677


Q ss_pred             HHHHHHHhhccC
Q psy4112         175 LKYFLKSENNTS  186 (284)
Q Consensus       175 ~pyf~k~E~~~~  186 (284)
                      .+||.+.++...
T Consensus       161 ~~~~~~~~~~~~  172 (379)
T d2f5va1         161 ESYFQTGTDQFK  172 (379)
T ss_dssp             HHHHTEESCTTT
T ss_pred             hhhhhHHHHHHH
Confidence            777776665443

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.81  E-value=1.6e-09  Score=89.01  Aligned_cols=39  Identities=26%  Similarity=0.480  Sum_probs=35.1

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      +.++||+||||||.+|+++|.+|++ .+++|+|||++...
T Consensus         2 m~~~yDviViGaG~~Gl~~A~~La~-~G~~V~vlE~~~~~   40 (297)
T d2bcgg1           2 IDTDYDVIVLGTGITECILSGLLSV-DGKKVLHIDKQDHY   40 (297)
T ss_dssp             CCCBCSEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             CCCcCCEEEECcCHHHHHHHHHHHH-CCCCEEEEcCCCCC
Confidence            3568999999999999999999999 59999999997644

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.38  E-value=1e-07  Score=87.50  Aligned_cols=38  Identities=34%  Similarity=0.516  Sum_probs=34.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhc-----CCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSE-----NPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~-----~~~~~vl~lE~G~~~   90 (284)
                      .+|||||||+|+||+++|.+|++     ..+.+|+|||++...
T Consensus        31 ~e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~p   73 (380)
T d2gmha1          31 EEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI   73 (380)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSST
T ss_pred             ccCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCC
Confidence            46999999999999999999996     369999999999765

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=98.34  E-value=1.6e-07  Score=80.58  Aligned_cols=36  Identities=39%  Similarity=0.625  Sum_probs=33.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      .++||+||||+|.+|+++|..|++ .+.+|+|||++.
T Consensus         2 ~~~~DvvIIGaGi~Gls~A~~La~-~G~~V~vlE~~~   37 (276)
T d1ryia1           2 KRHYEAVVIGGGIIGSAIAYYLAK-ENKNTALFESGT   37 (276)
T ss_dssp             CSEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSS
T ss_pred             CccCCEEEECcCHHHHHHHHHHHH-CCCcEEEEeCCC
Confidence            457999999999999999999999 599999999975

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=98.33  E-value=1.7e-07  Score=79.29  Aligned_cols=36  Identities=39%  Similarity=0.638  Sum_probs=33.3

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      +||+||||+|++|+++|..|++ .+.+|+|||++...
T Consensus         2 ~yDViIIGaG~aGl~aA~~la~-~G~~V~liEk~~~~   37 (251)
T d2i0za1           2 HYDVIVIGGGPSGLMAAIGAAE-EGANVLLLDKGNKL   37 (251)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             cCCEEEECcCHHHHHHHHHHHH-CCCcEEEEeCCCCC
Confidence            5999999999999999999999 59999999998654

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=98.31  E-value=1.9e-07  Score=80.56  Aligned_cols=36  Identities=22%  Similarity=0.485  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .+||+||||+|.+|+++|.+|++ .+.+|+|||++..
T Consensus         2 ~~yDvvIIGaGi~Gls~A~~La~-~G~~V~viE~~~~   37 (281)
T d2gf3a1           2 THFDVIVVGAGSMGMAAGYQLAK-QGVKTLLVDAFDP   37 (281)
T ss_dssp             CCEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSCS
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH-CCCcEEEEeCCCC
Confidence            57999999999999999999999 5999999999753

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=98.31  E-value=1.6e-07  Score=77.87  Aligned_cols=36  Identities=31%  Similarity=0.528  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ++||+||||+|+||+++|..+++ .+++|+|||.+..
T Consensus         2 ~kYDviIIGgGpAGl~aA~~aar-~G~~V~viE~~~~   37 (229)
T d3lada1           2 QKFDVIVIGAGPGGYVAAIKSAQ-LGLKTALIEKYKG   37 (229)
T ss_dssp             CCCSEEEECCSHHHHHHHHHHHH-HTCCEEEEECCBC
T ss_pred             CcCCEEEECcCHHHHHHHHHHHH-CCCeEEEEecccC
Confidence            57999999999999999999999 5999999998653

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.28  E-value=2.4e-07  Score=81.12  Aligned_cols=38  Identities=26%  Similarity=0.323  Sum_probs=34.6

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||||||+|++|+++|.+|++ .+.+|+|||+++..
T Consensus        14 ~e~~DVlVIG~G~aGl~aA~~la~-~G~~V~lvEK~~~~   51 (308)
T d1y0pa2          14 HDTVDVVVVGSGGAGFSAAISATD-SGAKVILIEKEPVI   51 (308)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             CCcCCEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence            467999999999999999999999 59999999998654

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=98.28  E-value=2.1e-07  Score=79.72  Aligned_cols=38  Identities=24%  Similarity=0.364  Sum_probs=34.4

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .+.+|+||||+|++|+.+|..|++ .+.+|+|||+++..
T Consensus         2 ~~~~DViIIGaG~aGl~aA~~la~-~G~~V~vlEk~~~~   39 (253)
T d2gqfa1           2 SQYSENIIIGAGAAGLFCAAQLAK-LGKSVTVFDNGKKI   39 (253)
T ss_dssp             EEECSEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             CCCCcEEEECcCHHHHHHHHHHHH-CCCcEEEEecCCCC
Confidence            356999999999999999999999 59999999998754

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.24  E-value=3.2e-07  Score=81.00  Aligned_cols=36  Identities=39%  Similarity=0.653  Sum_probs=32.8

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .||+||||||++|+++|.+|++ .+.+|+|||+....
T Consensus         1 M~dv~IIGaG~sGl~~A~~L~~-~g~~V~iiEk~~~i   36 (298)
T d1i8ta1           1 MYDYIIVGSGLFGAVCANELKK-LNKKVLVIEKRNHI   36 (298)
T ss_dssp             CEEEEEECCSHHHHHHHHHHGG-GTCCEEEECSSSSS
T ss_pred             CccEEEECCcHHHHHHHHHHHh-CCCcEEEEECCCCc
Confidence            4899999999999999999998 59999999997654

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=4e-07  Score=77.12  Aligned_cols=38  Identities=32%  Similarity=0.398  Sum_probs=34.4

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++.+|||||+|.+|+++|.+|++ .+.+|+|||+....
T Consensus         3 ~~~~kViVIGaG~aGL~aA~~L~~-~G~~V~VlEa~~r~   40 (449)
T d2dw4a2           3 KKTGKVIIIGSGVSGLAAARQLQS-FGMDVTLLEARDRV   40 (449)
T ss_dssp             SCCCEEEEECCBHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             CCCCcEEEECCCHHHHHHHHHHHh-CCCCEEEEeCCCCC
Confidence            566889999999999999999999 59999999998754

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=3.8e-07  Score=75.84  Aligned_cols=35  Identities=40%  Similarity=0.652  Sum_probs=32.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ++||+||||+|++|+.+|.++++ .+.+|+|||++.
T Consensus         1 k~yDvvVIG~G~aG~~aA~~a~~-~G~kV~iiE~~~   35 (217)
T d1gesa1           1 KHYDYIAIGGGSGGIASINRAAM-YGQKCALIEAKE   35 (217)
T ss_dssp             CEEEEEEECCSHHHHHHHHHHHT-TTCCEEEEESSC
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH-CCCEEEEEeccC
Confidence            46999999999999999999999 599999999864

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=98.21  E-value=3.9e-07  Score=75.69  Aligned_cols=36  Identities=39%  Similarity=0.562  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ++||+||||+|++|+.+|..+++ .+.+|+|||++..
T Consensus         2 ~~yDvvVIGgGpaGl~aA~~aa~-~G~kV~vie~~~~   37 (221)
T d1dxla1           2 DENDVVIIGGGPGGYVAAIKAAQ-LGFKTTCIEKRGA   37 (221)
T ss_dssp             CCCCEEEECCSHHHHHHHHHHHH-HTCCEEEEECSSS
T ss_pred             CcCCEEEECCCHHHHHHHHHHHH-CCCcEEEEEecCC
Confidence            57999999999999999999999 5999999998754

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.20  E-value=3.1e-07  Score=76.64  Aligned_cols=37  Identities=30%  Similarity=0.401  Sum_probs=33.7

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++||+||||+|++|+.+|..+++ .+.+|+|||..+.
T Consensus         3 ~~~yDviVIG~GpAGl~aA~~aa~-~G~kV~lie~~~~   39 (233)
T d1v59a1           3 NKSHDVVIIGGGPAGYVAAIKAAQ-LGFNTACVEKRGK   39 (233)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSSS
T ss_pred             CcccCEEEECCCHHHHHHHHHHHH-CCCcEEEEEecCC
Confidence            467999999999999999999999 5999999998654

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.20  E-value=4.7e-07  Score=76.10  Aligned_cols=36  Identities=33%  Similarity=0.598  Sum_probs=33.2

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      +||+||||+|++|+++|.++++ .+.+|+|||.++..
T Consensus         3 dYDviVIG~GpaGl~aA~~aa~-~G~kV~viE~~~~~   38 (235)
T d1h6va1           3 DFDLIIIGGGSGGLAAAKEAAK-FDKKVMVLDFVTPT   38 (235)
T ss_dssp             SEEEEEECCSHHHHHHHHHHGG-GCCCEEEECCCCCC
T ss_pred             cCCEEEECCCHHHHHHHHHHHH-CCCeEEEEeccCCC
Confidence            6999999999999999999999 59999999987654

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=98.19  E-value=5.2e-07  Score=78.38  Aligned_cols=38  Identities=32%  Similarity=0.552  Sum_probs=34.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|+||||+|++|+++|.+|++..+.+|+|||+++..
T Consensus        32 ~e~DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~   69 (278)
T d1rp0a1          32 AETDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSP   69 (278)
T ss_dssp             TEEEEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSC
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCC
Confidence            56999999999999999999997569999999998753

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=98.17  E-value=5.8e-07  Score=75.51  Aligned_cols=34  Identities=32%  Similarity=0.551  Sum_probs=31.1

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ||+|||+|++|+++|.+|++ .+.+|+|||+.+..
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~-~G~~V~vlE~~~~~   35 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRS-RGTDAVLLESSARL   35 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHT-TTCCEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHHh-CCCCEEEEecCCCC
Confidence            79999999999999999999 59999999997543

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=98.16  E-value=5.9e-07  Score=75.61  Aligned_cols=37  Identities=35%  Similarity=0.547  Sum_probs=33.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ..+||+||||+|++|+++|..|++ .+.+|+|||+.+.
T Consensus         4 ~~dyDviIIG~GPaGlsaA~~aa~-~G~~V~viE~~~~   40 (229)
T d1ojta1           4 DAEYDVVVLGGGPGGYSAAFAAAD-EGLKVAIVERYKT   40 (229)
T ss_dssp             EEEEEEEEECCSHHHHHHHHHHHH-TTCCEEEEESSSC
T ss_pred             CCccCEEEECcCHHHHHHHHHHHH-CCCeEEEEeccCC
Confidence            357999999999999999999999 5999999998764

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.15  E-value=6.9e-07  Score=72.77  Aligned_cols=35  Identities=31%  Similarity=0.551  Sum_probs=30.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCC-eEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKW-KVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~-~vl~lE~G~~~   90 (284)
                      .||||||+|++|+++|.+|++ .+. +|+|||+....
T Consensus         1 P~V~IIGaG~aGL~aA~~L~~-~G~~~V~vlE~~~~~   36 (347)
T d1b5qa1           1 PRVIVVGAGMSGISAAKRLSE-AGITDLLILEATDHI   36 (347)
T ss_dssp             CCEEEECCBHHHHHHHHHHHH-TTCCCEEEECSSSSS
T ss_pred             CCEEEECCcHHHHHHHHHHHh-CCCCcEEEEECCCCC
Confidence            489999999999999999999 585 69999997643

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=98.14  E-value=7.2e-07  Score=78.80  Aligned_cols=39  Identities=33%  Similarity=0.371  Sum_probs=35.0

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..+++||||||+|++|+++|.+|++ .+.+|+|||+++..
T Consensus        20 ~~et~DVvVIG~G~aGl~aA~~la~-~G~~V~llEk~~~~   58 (322)
T d1d4ca2          20 VKETTDVVIIGSGGAGLAAAVSARD-AGAKVILLEKEPIP   58 (322)
T ss_dssp             CCEECSEEEECSSHHHHHHHHHHHT-TTCCEEEECSSSSS
T ss_pred             CCCcceEEEECcCHHHHHHHHHHHH-CCCcEEEEeCCCCC
Confidence            3567999999999999999999999 59999999998653

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.12  E-value=8.5e-07  Score=73.39  Aligned_cols=35  Identities=34%  Similarity=0.513  Sum_probs=32.4

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      +||+||||+|++|+++|..+++ .+.+|+|||++..
T Consensus         3 ~~DviVIG~GpaGl~aA~~aar-~G~kV~vIEk~~~   37 (223)
T d1ebda1           3 ETETLVVGAGPGGYVAAIRAAQ-LGQKVTIVEKGNL   37 (223)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHH-TTCCEEEEESSCT
T ss_pred             cCCEEEECCCHHHHHHHHHHHH-CCCEEEEEecCCC
Confidence            6999999999999999999999 6999999998753

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=98.11  E-value=8.2e-07  Score=78.34  Aligned_cols=36  Identities=22%  Similarity=0.272  Sum_probs=32.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      +.|||||||+|++|+++|..+++ .+.+|+|||+++.
T Consensus         4 ~~~DVvVIG~G~AGl~AAl~aa~-~G~~V~liEK~~~   39 (336)
T d2bs2a2           4 QYCDSLVIGGGLAGLRAAVATQQ-KGLSTIVLSLIPV   39 (336)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHT-TTCCEEEECSSCG
T ss_pred             eecCEEEECcCHHHHHHHHHHHH-CCCCEEEEecCCC
Confidence            35899999999999999999999 5999999999764

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=9.7e-07  Score=73.30  Aligned_cols=35  Identities=37%  Similarity=0.633  Sum_probs=32.2

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      +||+||||+|++|+.+|..+++ .+.+|+|||.+..
T Consensus         3 ~yDviIIG~GpaG~~aA~~aar-~G~kV~vIEk~~~   37 (221)
T d3grsa1           3 SYDYLVIGGGSGGLASARRAAE-LGARAAVVESHKL   37 (221)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHH-TTCCEEEEESSCT
T ss_pred             ccCEEEECCCHHHHHHHHHHHH-CCCEEEEEeccCC
Confidence            6999999999999999999999 5999999998653

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=9e-07  Score=76.65  Aligned_cols=33  Identities=33%  Similarity=0.678  Sum_probs=30.7

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ||||||+|++|+++|.+|++ .+.+|+|||+...
T Consensus         1 DViVIGaG~aGL~aA~~L~~-~G~~V~VlE~~~~   33 (383)
T d2v5za1           1 DVVVVGGGISGMAAAKLLHD-SGLNVVVLEARDR   33 (383)
T ss_dssp             SEEEECCBHHHHHHHHHHHH-TTCCEEEEESSSS
T ss_pred             CEEEECCCHHHHHHHHHHHh-CCCCEEEEecCCC
Confidence            89999999999999999999 5999999998654

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=98.02  E-value=1.3e-06  Score=77.08  Aligned_cols=38  Identities=13%  Similarity=0.217  Sum_probs=34.6

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .+++||||||+|.+|+++|..+++ .+.+|+|||+++..
T Consensus        17 ~e~~DVvVIGaG~aGl~AA~~aa~-~G~~V~vlEK~~~~   54 (317)
T d1qo8a2          17 SETTQVLVVGAGSAGFNASLAAKK-AGANVILVDKAPFS   54 (317)
T ss_dssp             SEEEEEEEECCSHHHHHHHHHHHH-HTCCEEEECSSSSS
T ss_pred             CCccCEEEECcCHHHHHHHHHHHH-CCCcEEEEeCCCCC
Confidence            567999999999999999999999 59999999998654

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=98.00  E-value=2.2e-06  Score=71.61  Aligned_cols=34  Identities=26%  Similarity=0.410  Sum_probs=30.8

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .|||||+|++|+++|.+|++ .+.+|+|||+++..
T Consensus         3 kV~IIGaG~aGL~aA~~La~-~G~~V~vlE~~~~~   36 (373)
T d1seza1           3 RVAVIGAGVSGLAAAYKLKI-HGLNVTVFEAEGKA   36 (373)
T ss_dssp             EEEEECCSHHHHHHHHHHHT-TSCEEEEECSSSSS
T ss_pred             EEEEECcCHHHHHHHHHHHh-CCCCEEEEeCCCCC
Confidence            48999999999999999999 59999999997653

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=97.98  E-value=2.2e-06  Score=69.04  Aligned_cols=33  Identities=24%  Similarity=0.394  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      .||+||||+|++|+.+|..+++ .+.+|+|||..
T Consensus         1 ~yDViIIGgGpaGl~AAi~aar-~G~~v~iie~~   33 (184)
T d1fl2a1           1 AYDVLIVGSGPAGAAAAIYSAR-KGIRTGLMGER   33 (184)
T ss_dssp             CEEEEEECCSHHHHHHHHHHHT-TTCCEEEECSS
T ss_pred             CCcEEEECcCHHHHHHHHHHHH-cCCeEEEEEEe
Confidence            4999999999999999999999 59999999963

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=2.5e-06  Score=74.73  Aligned_cols=37  Identities=32%  Similarity=0.541  Sum_probs=32.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||||||+|++|+++|..+++ .+ +|+|||+++..
T Consensus         5 ~~~~DVvVVG~G~AGl~AA~~a~~-~g-~V~llEK~~~~   41 (305)
T d1chua2           5 EHSCDVLIIGSGAAGLSLALRLAD-QH-QVIVLSKGPVT   41 (305)
T ss_dssp             SEECSEEEECCSHHHHHHHHHHTT-TS-CEEEECSSCTT
T ss_pred             cccCCEEEECccHHHHHHHHHhhc-CC-CEEEEECCCCC
Confidence            457999999999999999999987 46 99999998744

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.96  E-value=2.5e-06  Score=75.66  Aligned_cols=37  Identities=38%  Similarity=0.444  Sum_probs=32.5

Q ss_pred             cccEEEECCChHHHHHHHHHhc---CCCCeEEEeccCCcc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSE---NPKWKVLLLESGEDE   90 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~---~~~~~vl~lE~G~~~   90 (284)
                      ++||||||+|++|+++|.++++   +++.+|+|||+++..
T Consensus        21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~   60 (356)
T d1jnra2          21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVE   60 (356)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTT
T ss_pred             ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCC
Confidence            6899999999999999999875   368999999998653

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=97.95  E-value=2.6e-06  Score=72.92  Aligned_cols=37  Identities=30%  Similarity=0.431  Sum_probs=32.7

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..-+|+|||+|++|+++|.+|++ .+.+|+|||+.+..
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~-~G~~V~vlE~~~~~   65 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAG-AGHQVTVLEASERP   65 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHH-HTCEEEEECSSSSS
T ss_pred             CCCeEEEECCCHHHHHHHHHHHH-CCCCEEEEeCCCCC
Confidence            33589999999999999999999 59999999997643

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.95  E-value=2.9e-06  Score=72.81  Aligned_cols=33  Identities=42%  Similarity=0.758  Sum_probs=31.2

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ||+||||+|++|..+|.++++ .+.+|+|||++.
T Consensus         2 yDviVIG~G~aG~~aA~~aa~-~G~~V~liE~~~   34 (259)
T d1onfa1           2 YDLIVIGGGSGGMAAARRAAR-HNAKVALVEKSR   34 (259)
T ss_dssp             BSEEEECCSHHHHHHHHHHHH-TTCCEEEEESSS
T ss_pred             ceEEEECCCHHHHHHHHHHHH-CCCeEEEEecCC
Confidence            899999999999999999999 599999999864

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=97.92  E-value=2e-06  Score=76.44  Aligned_cols=38  Identities=29%  Similarity=0.359  Sum_probs=34.3

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ..+|||||||+|+||+.+|.++++ .+.+|+|||+++..
T Consensus         5 ~~~~DVlVVG~G~AGl~AAl~aa~-~G~~V~lleK~~~~   42 (330)
T d1neka2           5 VREFDAVVIGAGGAGMRAALQISQ-SGQTCALLSKVFPT   42 (330)
T ss_dssp             EEEESCEEECCSHHHHHHHHHHHH-TTCCCEEECSSCGG
T ss_pred             cccCCEEEECcCHHHHHHHHHHHH-cCCeEEEEeCCCCC
Confidence            458999999999999999999999 59999999998654

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=97.92  E-value=4.2e-06  Score=74.02  Aligned_cols=39  Identities=28%  Similarity=0.400  Sum_probs=35.4

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      +++++|+||||+|++|+++|.+|.+ .+.+|+|+|+++..
T Consensus         4 p~~~~dV~IIGAG~sGl~~a~~L~~-~G~~v~i~Ek~~~i   42 (298)
T d1w4xa1           4 PPEEVDVLVVGAGFSGLYALYRLRE-LGRSVHVIETAGDV   42 (298)
T ss_dssp             CCSEEEEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSS
T ss_pred             CCCCCCEEEECccHHHHHHHHHHHh-CCCCEEEEEcCCCc
Confidence            4678999999999999999999999 59999999998754

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=97.91  E-value=4.1e-06  Score=69.77  Aligned_cols=36  Identities=28%  Similarity=0.320  Sum_probs=32.2

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      ..+-+|||||+|++|+++|.+|++ .+.+|+|||++.
T Consensus         4 ~~~~kVvVIGaGiaGl~~A~~L~~-~G~~V~vier~~   39 (268)
T d1c0pa1           4 HSQKRVVVLGSGVIGLSSALILAR-KGYSVHILARDL   39 (268)
T ss_dssp             CCSCEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSC
T ss_pred             CCCCcEEEECccHHHHHHHHHHHH-CCCCEEEEeCCC
Confidence            345689999999999999999999 599999999864

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=97.91  E-value=2.8e-06  Score=70.74  Aligned_cols=35  Identities=34%  Similarity=0.502  Sum_probs=32.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      -+||+||||+|++|+.+|..+++ .+.+|+|||.+.
T Consensus         4 ~~~DlvVIG~GpaGl~aA~~aa~-~G~~V~liE~~~   38 (220)
T d1lvla1           4 IQTTLLIIGGGPGGYVAAIRAGQ-LGIPTVLVEGQA   38 (220)
T ss_dssp             EECSEEEECCSHHHHHHHHHHHH-HTCCEEEECSSC
T ss_pred             cccCEEEECCCHHHHHHHHHHHH-CCCcEEEEecCC
Confidence            46999999999999999999999 599999999874

>d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=97.87  E-value=5.5e-06  Score=68.86  Aligned_cols=37  Identities=27%  Similarity=0.357  Sum_probs=31.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      +.||+||||+|+||+++|.++++....+|+|+|....
T Consensus         2 ~~YDviIIG~GpaGl~aA~~aa~~g~k~V~iie~~~~   38 (238)
T d1aoga1           2 KIFDLVVIGAGSGGLEAAWNAATLYKKRVAVIDVQMV   38 (238)
T ss_dssp             CSBSEEEECCSHHHHHHHHHHHHTSCCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEeecc
Confidence            5799999999999999999999853457999997643

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=97.84  E-value=5.6e-06  Score=72.39  Aligned_cols=38  Identities=34%  Similarity=0.555  Sum_probs=33.1

Q ss_pred             CcccEEEECCChHHHHHHHHHhc----CCCCeEEEeccCCcc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSE----NPKWKVLLLESGEDE   90 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~----~~~~~vl~lE~G~~~   90 (284)
                      ..|||||||+|++|+++|..|++    ..+.+|+|||+.+..
T Consensus         6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~   47 (360)
T d1pn0a1           6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK   47 (360)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred             CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence            45999999999999999999973    368999999997654

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=97.79  E-value=7.6e-06  Score=70.92  Aligned_cols=33  Identities=33%  Similarity=0.696  Sum_probs=29.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCC-eEEEeccCC
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKW-KVLLLESGE   88 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~-~vl~lE~G~   88 (284)
                      .||||||+|.+|+++|.+|++. +. +|+|||++.
T Consensus         2 ~dViIIGaGi~G~s~A~~La~~-G~~~V~liE~~~   35 (305)
T d1pj5a2           2 PRIVIIGAGIVGTNLADELVTR-GWNNITVLDQGP   35 (305)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHT-TCCCEEEECSSC
T ss_pred             CCEEEECcCHHHHHHHHHHHHc-CCCcEEEEeCCC
Confidence            5999999999999999999995 74 799999985

>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GidA-like
domain: GidA-related protein TTHA1897
species: Thermus thermophilus [TaxId: 274]

Probab=97.79  E-value=6.7e-06  Score=70.38  Aligned_cols=33  Identities=30%  Similarity=0.487  Sum_probs=30.5

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      .|||||||+|+||+.+|...++ .+.+|+|||.-
T Consensus         2 ~YDVIVIGgG~AG~eAA~~aAR-~G~ktllit~~   34 (230)
T d2cula1           2 AYQVLIVGAGFSGAETAFWLAQ-KGVRVGLLTQS   34 (230)
T ss_dssp             CCSEEEECCSHHHHHHHHHHHH-TTCCEEEEESC
T ss_pred             CCcEEEECcCHHHHHHHHHHHH-CCCcEEEEEec
Confidence            5999999999999999999999 59999999853

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.79  E-value=8e-06  Score=68.84  Aligned_cols=35  Identities=40%  Similarity=0.556  Sum_probs=31.8

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCC-eEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKW-KVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~-~vl~lE~G~~~   90 (284)
                      +||+|||+|++|+++|..|++ .+. +|+|+|+.+..
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~-~Gi~~V~V~Er~~~~   37 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQ-AGIGKVTLLESSSEI   37 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCSEEEEEESSSSC
T ss_pred             CEEEEECcCHHHHHHHHHHHh-CCCCeEEEEeCCCCC
Confidence            699999999999999999999 485 99999998764

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.72  E-value=9.1e-06  Score=69.83  Aligned_cols=35  Identities=23%  Similarity=0.370  Sum_probs=32.1

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ++||+|||+|++|+++|..|++ .+++|+|||+.+.
T Consensus         2 k~~V~IvGaGp~Gl~~A~~L~~-~G~~v~vlE~~~~   36 (292)
T d1k0ia1           2 KTQVAIIGAGPSGLLLGQLLHK-AGIDNVILERQTP   36 (292)
T ss_dssp             BCSEEEECCSHHHHHHHHHHHH-HTCCEEEECSSCH
T ss_pred             CCCEEEECcCHHHHHHHHHHHH-CCCCEEEEeCCCC
Confidence            4699999999999999999999 5999999999764

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=97.69  E-value=1.7e-05  Score=67.94  Aligned_cols=39  Identities=26%  Similarity=0.301  Sum_probs=34.9

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ...+||+||||+|++|+.+|..+++ .+.+|+|||.++..
T Consensus        39 ~~k~yDvvVIGgG~aG~~aA~~~a~-~G~kv~vve~~~~l   77 (261)
T d1mo9a1          39 DPREYDAIFIGGGAAGRFGSAYLRA-MGGRQLIVDRWPFL   77 (261)
T ss_dssp             CCSCBSEEEECCSHHHHHHHHHHHH-TTCCEEEEESSSSS
T ss_pred             CCccCCEEEECCCHHHHHHHHHHHH-CCCeEEEEeccCcc
Confidence            4678999999999999999999999 59999999987643

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=97.69  E-value=1.4e-05  Score=70.88  Aligned_cols=36  Identities=22%  Similarity=0.524  Sum_probs=32.0

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCccc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDEN   91 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~   91 (284)
                      -.++|||||++|+++|.+|++ .+.+|+|+|+.....
T Consensus         3 KKI~IIGaG~sGL~aA~~L~k-~G~~V~viEk~~~iG   38 (314)
T d2bi7a1           3 KKILIVGAGFSGAVIGRQLAE-KGHQVHIIDQRDHIG   38 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHT-TTCEEEEEESSSSSS
T ss_pred             CEEEEECCcHHHHHHHHHHHh-CCCCEEEEECCCCCc
Confidence            358999999999999999999 589999999987653

>d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=97.68  E-value=9.3e-06  Score=68.25  Aligned_cols=37  Identities=27%  Similarity=0.455  Sum_probs=31.4

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ++||+||||+|+||..+|..+++....+|+|+|....
T Consensus         2 k~YDvvVIG~GpAG~~aAi~aa~~g~k~V~vie~~~~   38 (240)
T d1feca1           2 RAYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKH   38 (240)
T ss_dssp             CSEEEEEECCSHHHHHHHHHHHHHHCCCEEEEESCSS
T ss_pred             CccCEEEECCCHHHHHHHHHHHHcCCCEEEEEEEecc
Confidence            5799999999999999999999842357999997654

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=97.64  E-value=2.2e-05  Score=65.87  Aligned_cols=36  Identities=19%  Similarity=0.316  Sum_probs=31.8

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ..-.|+|||+|++|+++|..|++ .+.+|+|||+.+.
T Consensus         3 ~~~kV~IiGaG~aGl~~A~~L~~-~G~~v~v~Er~~~   38 (265)
T d2voua1           3 TTDRIAVVGGSISGLTAALMLRD-AGVDVDVYERSPQ   38 (265)
T ss_dssp             CCSEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSS
T ss_pred             CCCcEEEECcCHHHHHHHHHHHH-CCCCEEEEeCCCC
Confidence            34579999999999999999999 5999999998653

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=97.63  E-value=1.8e-05  Score=69.77  Aligned_cols=37  Identities=24%  Similarity=0.321  Sum_probs=32.5

Q ss_pred             cccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE   90 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~   90 (284)
                      ++||||||+|.||+.+|.++++. ++.+|+|||++...
T Consensus         5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~   42 (311)
T d1kf6a2           5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPM   42 (311)
T ss_dssp             ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGG
T ss_pred             ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCC
Confidence            69999999999999999999973 57899999987643

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.62  E-value=2.1e-05  Score=69.05  Aligned_cols=39  Identities=28%  Similarity=0.488  Sum_probs=34.4

Q ss_pred             CCcccEEEECCChHHHHHHHHHhc-CCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSE-NPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~-~~~~~vl~lE~G~~~   90 (284)
                      ..++|++|||+|++|+++|..|++ +++.+|+|+|+....
T Consensus        48 ~~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~   87 (311)
T d2gjca1          48 FAVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAP   87 (311)
T ss_dssp             TTEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSC
T ss_pred             ccCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCC
Confidence            346999999999999999999996 368999999998764

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=97.60  E-value=1.8e-05  Score=64.23  Aligned_cols=36  Identities=19%  Similarity=0.326  Sum_probs=32.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      +..|++|||+|++|+.+|..|++ .+.+|+|||+...
T Consensus         4 k~~dVvIIGGGpaGl~AA~~~ar-~g~~v~iie~~~~   39 (190)
T d1trba1           4 KHSKLLILGSGPAGYTAAVYAAR-ANLQPVLITGMEK   39 (190)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHT-TTCCCEEECCSST
T ss_pred             CCCcEEEECCCHHHHHHHHHHHH-cCCceEEEEeecc
Confidence            45899999999999999999999 5999999997654

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.55  E-value=2.5e-05  Score=63.73  Aligned_cols=36  Identities=22%  Similarity=0.264  Sum_probs=32.3

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ..+|++|||+|++|+.+|..|++ .+.+|+|+|.+..
T Consensus         4 ~~~~VvIIGgGpaGl~aA~~~ar-~g~~v~vie~~~~   39 (192)
T d1vdca1           4 HNTRLCIVGSGPAAHTAAIYAAR-AELKPLLFEGWMA   39 (192)
T ss_dssp             EEEEEEEECCSHHHHHHHHHHHH-TTCCCEEECCSSB
T ss_pred             ccceEEEECCCHHHHHHHHHHHH-cCCcEEEEEeecc
Confidence            35899999999999999999999 5999999997654

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=97.43  E-value=8.3e-05  Score=60.87  Aligned_cols=39  Identities=15%  Similarity=0.319  Sum_probs=34.4

Q ss_pred             CCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          51 ILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        51 ~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .....+++|||+|++|+.+|..|++ .+++|.|+|+.+..
T Consensus        40 ~~~~k~V~IIGaGPAGL~AA~~la~-~G~~Vtl~E~~~~~   78 (179)
T d1ps9a3          40 AVQKKNLAVVGAGPAGLAFAINAAA-RGHQVTLFDAHSEI   78 (179)
T ss_dssp             CSSCCEEEEECCSHHHHHHHHHHHT-TTCEEEEEESSSSS
T ss_pred             CCCCcEEEEECccHHHHHHHHHHHh-hccceEEEeccCcc
Confidence            4556789999999999999999999 59999999987654

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.30  E-value=9.2e-05  Score=59.43  Aligned_cols=35  Identities=17%  Similarity=0.284  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCe-EEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWK-VLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~-vl~lE~G~~~   90 (284)
                      -.|+|||+|++|+.+|..|++ .+.+ |.|+|+++..
T Consensus         5 ~kVaIIGaGpaGl~aA~~l~~-~G~~~V~v~E~~~~~   40 (196)
T d1gtea4           5 AKIALLGAGPASISCASFLAR-LGYSDITIFEKQEYV   40 (196)
T ss_dssp             CCEEEECCSHHHHHHHHHHHH-TTCCCEEEEESSSSC
T ss_pred             CEEEEECChHHHHHHHHHHHH-CCCCeEEEEEecCcc
Confidence            358999999999999999999 4875 9999998765

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.23  E-value=0.00015  Score=60.65  Aligned_cols=38  Identities=29%  Similarity=0.411  Sum_probs=34.4

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ...-+++|||+|++|+.+|..|++ .+.+|.|+|+....
T Consensus        47 ~~~k~VvIIGaGpAGl~aA~~l~~-~G~~v~l~E~~~~~   84 (233)
T d1djqa3          47 KNKDSVLIVGAGPSGSEAARVLME-SGYTVHLTDTAEKI   84 (233)
T ss_dssp             SSCCEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSST
T ss_pred             cCCceEEEEcccHHHHHHHHHHHH-hccceeeEeecccc
Confidence            456899999999999999999999 59999999998765

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.14  E-value=0.00014  Score=60.21  Aligned_cols=36  Identities=19%  Similarity=0.250  Sum_probs=31.0

Q ss_pred             ccEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~   90 (284)
                      ..++|||+|+||+++|..|.+. .+.+|.|+|+.+..
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~   38 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVP   38 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSS
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence            4689999999999999999763 47799999999765

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.10  E-value=0.0001  Score=60.93  Aligned_cols=36  Identities=25%  Similarity=0.259  Sum_probs=31.1

Q ss_pred             ccEEEECCChHHHHHHHHHhcC------CCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSEN------PKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~------~~~~vl~lE~G~~~   90 (284)
                      +.|+|||+|+||+++|..|++.      .+.+|.|+|+.+..
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~   44 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTP   44 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSC
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCC
Confidence            6899999999999999999883      23689999998754

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.86  E-value=0.00042  Score=60.76  Aligned_cols=35  Identities=31%  Similarity=0.365  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~   90 (284)
                      .|+|||+|++|+++|..|.+. ...+|.|+|+....
T Consensus         6 rVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~i   41 (335)
T d2gv8a1           6 KIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSP   41 (335)
T ss_dssp             EEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSS
T ss_pred             eEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCC
Confidence            599999999999999999874 23599999999754

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.65  E-value=0.00048  Score=57.46  Aligned_cols=34  Identities=24%  Similarity=0.344  Sum_probs=27.9

Q ss_pred             ccEEEECCChHHHHHHHHHhcC--CCCeEEEeccCC
Q psy4112          55 YDFVIIGGGVGGSVVANRLSEN--PKWKVLLLESGE   88 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~--~~~~vl~lE~G~   88 (284)
                      .++||||+|++|.++|.++++.  .+.+|+|+|++.
T Consensus         2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~~   37 (233)
T d1xdia1           2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG   37 (233)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC
T ss_pred             cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecCC
Confidence            4799999999999998877652  357899999864

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.58  E-value=0.00016  Score=59.42  Aligned_cols=31  Identities=32%  Similarity=0.260  Sum_probs=27.1

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      .++|||+|.+|+++|..|++ .+.+|+++|+.
T Consensus         2 kV~VIGaGi~GlstA~~L~~-~G~~v~v~e~~   32 (246)
T d1kifa1           2 RVVVIGAGVIGLSTALCIHE-RYHSVLQPLDV   32 (246)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-HHTTTSSSCEE
T ss_pred             EEEEECchHHHHHHHHHHHH-CCCCceEEeee
Confidence            38999999999999999999 58888887764

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.49  E-value=0.0013  Score=49.07  Aligned_cols=34  Identities=29%  Similarity=0.410  Sum_probs=31.7

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++ -+.+|.|+|+++..
T Consensus        24 ~v~IiGgG~ig~E~A~~l~~-~G~~Vtlve~~~~i   57 (117)
T d1ebda2          24 SLVVIGGGYIGIELGTAYAN-FGTKVTILEGAGEI   57 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEEESSSSS
T ss_pred             eEEEECCCccceeeeeeecc-cccEEEEEEeccee
Confidence            69999999999999999999 59999999999865

>d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit
species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]

Probab=96.39  E-value=0.0012  Score=51.37  Aligned_cols=35  Identities=34%  Similarity=0.647  Sum_probs=30.0

Q ss_pred             cEEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~   90 (284)
                      .+||||+|.+|+.+|.+|.+. ++.+|.|||+.+..
T Consensus         4 rivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~   39 (186)
T d1fcda1           4 KVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDY   39 (186)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCE
T ss_pred             cEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCcc
Confidence            589999999999999999874 45799999987643

>d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=96.38  E-value=0.0013  Score=49.56  Aligned_cols=35  Identities=34%  Similarity=0.487  Sum_probs=31.7

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      -+++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus        33 ~~vvIiGgG~iG~E~A~~l~~-~g~~Vtlv~~~~~l   67 (122)
T d1xhca2          33 GEAIIIGGGFIGLELAGNLAE-AGYHVKLIHRGAMF   67 (122)
T ss_dssp             SEEEEEECSHHHHHHHHHHHH-TTCEEEEECSSSCC
T ss_pred             CcEEEECCcHHHHHHHHHhhc-ccceEEEEeccccc
Confidence            368999999999999999999 59999999998754

>d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=96.35  E-value=0.0017  Score=49.07  Aligned_cols=35  Identities=29%  Similarity=0.354  Sum_probs=32.1

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      -.++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus        31 ~~vvIIGgG~iG~E~A~~l~~-~g~~Vtli~~~~~~   65 (121)
T d1d7ya2          31 SRLLIVGGGVIGLELAATART-AGVHVSLVETQPRL   65 (121)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSSST
T ss_pred             CeEEEECcchhHHHHHHHhhc-ccceEEEEeecccc
Confidence            579999999999999999999 59999999998764

>d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.27  E-value=0.0018  Score=53.36  Aligned_cols=39  Identities=26%  Similarity=0.489  Sum_probs=32.4

Q ss_pred             CCcccEEEECCChHHHHHHHHHhc-CCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSE-NPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~-~~~~~vl~lE~G~~~   90 (284)
                      +.++++||||+|.+|+.+|..|.+ ++..+|++|++.+..
T Consensus         2 p~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~   41 (213)
T d1m6ia1           2 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPEL   41 (213)
T ss_dssp             CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSC
T ss_pred             CCCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCC
Confidence            567999999999999999999976 355689999876543

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=96.19  E-value=0.0025  Score=47.60  Aligned_cols=34  Identities=18%  Similarity=0.205  Sum_probs=31.2

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus        23 ~vvIiGgG~ig~E~A~~l~~-~G~~Vtlve~~~~~   56 (116)
T d1gesa2          23 RVAVVGAGYIGVELGGVING-LGAKTHLFEMFDAP   56 (116)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             EEEEECCChhhHHHHHHhhc-cccEEEEEeecchh
Confidence            48999999999999999999 59999999999865

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.17  E-value=0.0024  Score=48.95  Aligned_cols=35  Identities=31%  Similarity=0.424  Sum_probs=32.3

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      -.++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus        36 k~v~VIGgG~iG~E~A~~l~~-~g~~Vtvie~~~~~   70 (133)
T d1q1ra2          36 NRLVVIGGGYIGLEVAATAIK-ANMHVTLLDTAARV   70 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSST
T ss_pred             CEEEEECCchHHHHHHHHHHh-hCcceeeeeecccc
Confidence            579999999999999999999 59999999999865

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=96.12  E-value=0.0027  Score=47.94  Aligned_cols=35  Identities=23%  Similarity=0.320  Sum_probs=31.7

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      -.++|||+|..|+-+|..|++ .+.+|.|+|+.+..
T Consensus        31 k~vvViGgG~iG~E~A~~l~~-~g~~Vtlie~~~~~   65 (123)
T d1nhpa2          31 NNVVVIGSGYIGIEAAEAFAK-AGKKVTVIDILDRP   65 (123)
T ss_dssp             CEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSSST
T ss_pred             CEEEEECChHHHHHHHHHhhc-cceEEEEEEecCcc
Confidence            378999999999999999999 59999999998754

>d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.10  E-value=0.0036  Score=49.08  Aligned_cols=34  Identities=29%  Similarity=0.501  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      +++|||+|++|+.+|..|.+. +.+|.|+|.....
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~-g~~v~v~~~~~~~   38 (185)
T d1q1ra1           5 NVVIVGTGLAGVEVAFGLRAS-GWEGNIRLVGDAT   38 (185)
T ss_dssp             EEEEECCSHHHHHHHHHHHHT-TCCSEEEEECSCC
T ss_pred             CEEEECCcHHHHHHHHHHHHc-CCceEEEEecCcc
Confidence            699999999999999999984 7777777777644

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=96.10  E-value=0.0031  Score=47.34  Aligned_cols=34  Identities=15%  Similarity=0.202  Sum_probs=31.2

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++ .+.+|.|+|+++..
T Consensus        24 ~v~IiGgG~iG~E~A~~l~~-~g~~Vtlv~~~~~i   57 (117)
T d1onfa2          24 KIGIVGSGYIAVELINVIKR-LGIDSYIFARGNRI   57 (117)
T ss_dssp             EEEEECCSHHHHHHHHHHHT-TTCEEEEECSSSSS
T ss_pred             EEEEECCchHHHHHHHHHHh-ccccceeeehhccc
Confidence            58999999999999999998 69999999998754

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=96.05  E-value=0.0024  Score=47.56  Aligned_cols=34  Identities=24%  Similarity=0.319  Sum_probs=31.4

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|+.|+-+|..|++ .+.+|.|+|+++..
T Consensus        23 ~vvIiGgG~~G~E~A~~l~~-~g~~Vtlve~~~~i   56 (115)
T d1lvla2          23 HLVVVGGGYIGLELGIAYRK-LGAQVSVVEARERI   56 (115)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-HTCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHHhh-cccceEEEeeeccc
Confidence            59999999999999999999 59999999999765

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.00  E-value=0.0034  Score=58.62  Aligned_cols=41  Identities=27%  Similarity=0.430  Sum_probs=37.2

Q ss_pred             CCCCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCccc
Q psy4112          50 PILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDEN   91 (284)
Q Consensus        50 ~~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~   91 (284)
                      .++++|||||+|.|..=|++|..|++ .|.|||-||+..+..
T Consensus         2 ~lP~e~DVII~GTGL~ESILAaAlSr-~GkkVLHiD~N~yYG   42 (491)
T d1vg0a1           2 NLPSDFDVIVIGTGLPESIIAAACSR-SGQRVLHVDSRSYYG   42 (491)
T ss_dssp             CCCSBCSEEEECCSHHHHHHHHHHHH-TTCCEEEECSSSSSC
T ss_pred             CCCCccCEEEECCChHHHHHHHHHHh-cCCEEEEecCCCcCC
Confidence            36789999999999999999999999 599999999988753

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.0064  Score=45.83  Aligned_cols=34  Identities=26%  Similarity=0.193  Sum_probs=31.4

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus        24 ~vvIvGgG~iG~E~A~~l~~-~G~~Vtlv~~~~~~   57 (125)
T d3grsa2          24 RSVIVGAGYIAVEMAGILSA-LGSKTSLMIRHDKV   57 (125)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             EEEEEcCCccHHHHHHHHhc-CCcEEEEEeecccc
Confidence            58999999999999999999 59999999999754

>d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH oxidase /nitrite reductase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=95.53  E-value=0.0065  Score=47.01  Aligned_cols=33  Identities=30%  Similarity=0.566  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|++|+.+|..|++  +.+|.|+|+.+..
T Consensus         2 rVvIIGgG~~G~e~A~~l~~--~~~Vtvv~~~~~~   34 (167)
T d1xhca1           2 KVVIVGNGPGGFELAKQLSQ--TYEVTVIDKEPVP   34 (167)
T ss_dssp             EEEEECCSHHHHHHHHHHTT--TSEEEEECSSSSC
T ss_pred             eEEEECCcHHHHHHHHHHHc--CCCEEEEeccccc
Confidence            47999999999999999986  6799999987643

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=95.44  E-value=0.0076  Score=45.06  Aligned_cols=35  Identities=23%  Similarity=0.212  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      -.++|||+|..|+-+|..|++ -+.+|.++|+....
T Consensus        23 ~~i~IiG~G~ig~E~A~~l~~-~G~~Vtiv~~~~~l   57 (119)
T d3lada2          23 GKLGVIGAGVIGLELGSVWAR-LGAEVTVLEAMDKF   57 (119)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH-TTCEEEEEESSSSS
T ss_pred             CeEEEECCChHHHHHHHHHHH-cCCceEEEEeeccc
Confidence            348999999999999999999 59999999998764

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.42  E-value=0.0079  Score=45.20  Aligned_cols=34  Identities=29%  Similarity=0.335  Sum_probs=31.5

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++ -+.+|.|+|+++..
T Consensus        25 ~~vIiG~G~ig~E~A~~l~~-lG~~Vtii~~~~~~   58 (122)
T d1v59a2          25 RLTIIGGGIIGLEMGSVYSR-LGSKVTVVEFQPQI   58 (122)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSSSSS
T ss_pred             eEEEECCCchHHHHHHHHHh-hCcceeEEEecccc
Confidence            58999999999999999999 59999999998865

>d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=95.23  E-value=0.0098  Score=44.05  Aligned_cols=35  Identities=14%  Similarity=0.184  Sum_probs=31.6

Q ss_pred             ccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      -.++|||+|..|+-+|..|++ .+.+|.++|+++..
T Consensus        23 ~~vvVvGgG~ig~E~A~~l~~-~g~~vt~i~~~~~~   57 (121)
T d1mo9a2          23 STVVVVGGSKTAVEYGCFFNA-TGRRTVMLVRTEPL   57 (121)
T ss_dssp             SEEEEECCSHHHHHHHHHHHH-TTCEEEEECSSCTT
T ss_pred             CEEEEECCCHHHHHHHHHHHh-cchhheEeeccchh
Confidence            478999999999999999998 59999999998754

>d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.22  E-value=0.0071  Score=48.47  Aligned_cols=34  Identities=21%  Similarity=0.369  Sum_probs=29.7

Q ss_pred             EEEECCChHHHHHHHHHhcC-CCCeEEEeccCCcc
Q psy4112          57 FVIIGGGVGGSVVANRLSEN-PKWKVLLLESGEDE   90 (284)
Q Consensus        57 ~iivg~G~~g~~~a~~l~~~-~~~~vl~lE~G~~~   90 (284)
                      ++|||+|.+|+.+|..|.+. ++.+|.++|++...
T Consensus         3 VvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~   37 (198)
T d1nhpa1           3 VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI   37 (198)
T ss_dssp             EEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSS
T ss_pred             EEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCcc
Confidence            79999999999999999873 56789999988754

>d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent ferredoxin reductase, BphA4
species: Pseudomonas sp., KKS102 [TaxId: 306]

Probab=94.81  E-value=0.0079  Score=47.46  Aligned_cols=34  Identities=18%  Similarity=0.436  Sum_probs=27.3

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|++|+.+|..|.+. +.+|.+++.+...
T Consensus         5 ~VvIIGgG~~G~e~A~~l~~~-g~~v~i~~~~~~~   38 (183)
T d1d7ya1           5 PVVVLGAGLASVSFVAELRQA-GYQGLITVVGDEA   38 (183)
T ss_dssp             SEEEECCSHHHHHHHHHHHHH-TCCSCEEEEESSC
T ss_pred             CEEEECccHHHHHHHHHHHhc-CCceEEEEEeccc
Confidence            499999999999999999984 6666666665543

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=94.73  E-value=0.017  Score=42.85  Aligned_cols=35  Identities=23%  Similarity=0.217  Sum_probs=28.2

Q ss_pred             cEEEECCChHHHHHHHHHhcC--CCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSEN--PKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~--~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|.+-  .+..|.|+|+++..
T Consensus        22 ~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~i   58 (117)
T d1aoga2          22 RVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMI   58 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSS
T ss_pred             eEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchh
Confidence            699999999999999655431  46789999998755

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.68  E-value=0.013  Score=44.34  Aligned_cols=34  Identities=24%  Similarity=0.316  Sum_probs=31.4

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++ -+.+|.++|.++..
T Consensus        28 ~vvIiGgG~IG~E~A~~~~~-~G~~Vtive~~~~i   61 (125)
T d1ojta2          28 KLLIIGGGIIGLEMGTVYST-LGSRLDVVEMMDGL   61 (125)
T ss_dssp             EEEEESCSHHHHHHHHHHHH-HTCEEEEECSSSSS
T ss_pred             eEEEECCCHHHHHHHHHhhc-CCCEEEEEEeeccc
Confidence            58999999999999999999 59999999999865

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=94.54  E-value=0.012  Score=44.20  Aligned_cols=35  Identities=20%  Similarity=0.230  Sum_probs=31.8

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCccc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDEN   91 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~~   91 (284)
                      .++|||+|..|+-+|..|++ -+.+|.|+|+++..-
T Consensus        27 ~~viiG~G~iglE~A~~~~~-~G~~Vtvi~~~~~~l   61 (123)
T d1dxla2          27 KLVVIGAGYIGLEMGSVWGR-IGSEVTVVEFASEIV   61 (123)
T ss_dssp             EEEESCCSHHHHHHHHHHHH-HTCEEEEECSSSSSS
T ss_pred             eEEEEccchHHHHHHHHHHh-cCCeEEEEEEccccC
Confidence            58899999999999999999 599999999998653

>d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Saccharopine reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=94.29  E-value=0.017  Score=44.61  Aligned_cols=33  Identities=15%  Similarity=0.221  Sum_probs=29.4

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      -++|||+|-.|..+|..|++. +.+|.|+++-..
T Consensus         4 ~IliiGaG~~G~~~a~~L~~~-g~~V~v~dr~~~   36 (182)
T d1e5qa1           4 SVLMLGSGFVTRPTLDVLTDS-GIKVTVACRTLE   36 (182)
T ss_dssp             EEEEECCSTTHHHHHHHHHTT-TCEEEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHhC-CCEEEEEECChH
Confidence            378999999999999999994 899999997764

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=94.24  E-value=0.018  Score=43.26  Aligned_cols=33  Identities=27%  Similarity=0.444  Sum_probs=29.7

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .|||||.|..|..+|..|.+ .+..|+++|.-+.
T Consensus         2 ~~iIiG~G~~G~~la~~L~~-~g~~vvvid~d~~   34 (134)
T d2hmva1           2 QFAVIGLGRFGGSIVKELHR-MGHEVLAVDINEE   34 (134)
T ss_dssp             CEEEECCSHHHHHHHHHHHH-TTCCCEEEESCHH
T ss_pred             EEEEECCCHHHHHHHHHHHH-CCCeEEEecCcHH
Confidence            48999999999999999999 5999999997654

>d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.09  E-value=0.025  Score=42.26  Aligned_cols=31  Identities=13%  Similarity=0.119  Sum_probs=28.5

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      .++|||+|..|+-+|..|++ -+.+|.||++.
T Consensus        22 ~vvIIGgG~iG~E~A~~l~~-lG~~Vtii~~~   52 (122)
T d1h6va2          22 KTLVVGASYVALECAGFLAG-IGLDVTVMVRS   52 (122)
T ss_dssp             SEEEECCSHHHHHHHHHHHH-TTCCEEEEESS
T ss_pred             eEEEECCCccHHHHHHHHhh-cCCeEEEEEec
Confidence            59999999999999999999 59999999864

>d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase
species: Arthrobacter, strain 1c [TaxId: 1663]

Probab=93.90  E-value=0.022  Score=44.55  Aligned_cols=32  Identities=25%  Similarity=0.383  Sum_probs=29.1

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          57 FVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      +.|||+|..|+.+|..|++ .+..|.++++.+.
T Consensus         4 iaIiGaG~~G~~~A~~l~~-~G~~V~~~~r~~~   35 (184)
T d1bg6a2           4 YAVLGLGNGGHAFAAYLAL-KGQSVLAWDIDAQ   35 (184)
T ss_dssp             EEEECCSHHHHHHHHHHHH-TTCEEEEECSCHH
T ss_pred             EEEECccHHHHHHHHHHHH-CCCEEEEEECCHH
Confidence            6899999999999999999 5999999998653

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.82  E-value=0.028  Score=42.23  Aligned_cols=32  Identities=31%  Similarity=0.486  Sum_probs=28.9

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          57 FVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      ++|+|.|..|..+|..|.+ .+..|++||.-+.
T Consensus         3 IvI~G~G~~G~~la~~L~~-~g~~v~vid~d~~   34 (132)
T d1lssa_           3 IIIAGIGRVGYTLAKSLSE-KGHDIVLIDIDKD   34 (132)
T ss_dssp             EEEECCSHHHHHHHHHHHH-TTCEEEEEESCHH
T ss_pred             EEEECCCHHHHHHHHHHHH-CCCCcceecCChh
Confidence            7899999999999999998 5999999997653

>d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Ketopantoate reductase PanE
species: Escherichia coli [TaxId: 562]

Probab=93.66  E-value=0.036  Score=42.52  Aligned_cols=33  Identities=15%  Similarity=0.136  Sum_probs=30.1

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          57 FVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      +.|||+|..|+..|..|++ .+.+|.++.+....
T Consensus         3 I~IiGaG~iG~~~a~~L~~-~G~~V~~~~r~~~~   35 (167)
T d1ks9a2           3 ITVLGCGALGQLWLTALCK-QGHEVQGWLRVPQP   35 (167)
T ss_dssp             EEEECCSHHHHHHHHHHHH-TTCEEEEECSSCCS
T ss_pred             EEEECcCHHHHHHHHHHHH-CCCceEEEEcCHHH
Confidence            7899999999999999999 59999999988754

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=93.65  E-value=0.038  Score=40.59  Aligned_cols=35  Identities=20%  Similarity=0.132  Sum_probs=28.6

Q ss_pred             cEEEECCChHHHHHHHHHhc--CCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSE--NPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~--~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|..|+-+|..|++  ..+.+|.++|+++..
T Consensus        20 ~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~i   56 (117)
T d1feca2          20 RALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMI   56 (117)
T ss_dssp             EEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSS
T ss_pred             eEEEECCChHHHHHHHHhHhhcccccccceecccccc
Confidence            58999999999999975543  147899999998765

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.42  E-value=0.025  Score=42.98  Aligned_cols=36  Identities=31%  Similarity=0.343  Sum_probs=30.2

Q ss_pred             ccEEEECCChHHHHHHHHHhc---CCCCeEEEeccCCcc
Q psy4112          55 YDFVIIGGGVGGSVVANRLSE---NPKWKVLLLESGEDE   90 (284)
Q Consensus        55 ~d~iivg~G~~g~~~a~~l~~---~~~~~vl~lE~G~~~   90 (284)
                      -.++|||+|..|+-+|..|++   ..+.+|.++|+++..
T Consensus        38 k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~   76 (137)
T d1m6ia2          38 KSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGN   76 (137)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSST
T ss_pred             CEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccC
Confidence            368999999999999999974   247899999998764

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=92.15  E-value=0.09  Score=37.01  Aligned_cols=33  Identities=18%  Similarity=0.234  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      .++|+|.|-+|.++|..|.+ .+.+|.+.|....
T Consensus         7 ~v~ViGlG~sG~s~a~~L~~-~g~~v~~~D~~~~   39 (93)
T d2jfga1           7 NVVIIGLGLTGLSCVDFFLA-RGVTPRVMDTRMT   39 (93)
T ss_dssp             CEEEECCSHHHHHHHHHHHH-TTCCCEEEESSSS
T ss_pred             EEEEEeECHHHHHHHHHHHH-CCCEEEEeeCCcC
Confidence            48899999999999999999 5999999997654

>d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=91.41  E-value=0.095  Score=37.88  Aligned_cols=41  Identities=7%  Similarity=0.190  Sum_probs=30.3

Q ss_pred             ccCCCCCCCcccEEEECCChHHHHHHHHHhcCCCCeEEEecc
Q psy4112          45 FLGNKPILSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLES   86 (284)
Q Consensus        45 ~~~~~~~~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~   86 (284)
                      .|.++.....=+++|||+|.+|.-+|..|++. ..+|.++-.
T Consensus        23 ~y~~~~~f~gK~VlVVG~g~Sa~dia~~l~~~-ak~v~~~~~   63 (107)
T d2gv8a2          23 LFREPELFVGESVLVVGGASSANDLVRHLTPV-AKHPIYQSL   63 (107)
T ss_dssp             GCCCGGGGTTCCEEEECSSHHHHHHHHHHTTT-SCSSEEEEC
T ss_pred             cCcchhhcCCCeEEEECCCCCHHHHHHHHHHh-cCEEEEEEe
Confidence            45554445567899999999999999999985 445444443

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.26  E-value=0.17  Score=40.58  Aligned_cols=33  Identities=30%  Similarity=0.542  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      -+.|||+|..|...|..++. .+..|.++|.-+.
T Consensus         6 kvaViGaG~mG~~iA~~~a~-~G~~V~l~D~~~~   38 (192)
T d1f0ya2           6 HVTVIGGGLMGAGIAQVAAA-TGHTVVLVDQTED   38 (192)
T ss_dssp             EEEEECCSHHHHHHHHHHHH-TTCEEEEECSCHH
T ss_pred             EEEEECcCHHHHHHHHHHHh-CCCcEEEEECChH
Confidence            37899999999999999999 5999999997654

>d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, C-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=88.88  E-value=0.2  Score=38.04  Aligned_cols=34  Identities=15%  Similarity=0.142  Sum_probs=28.8

Q ss_pred             cEEEE--CCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVII--GGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iiv--g~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|+  |+|..|+.+|..|++ .+.+|.|+|..+..
T Consensus        41 ~vvi~d~ggg~ig~e~A~~la~-~G~~Vtlv~~~~~~   76 (156)
T d1djqa2          41 RVVILNADTYFMAPSLAEKLAT-AGHEVTIVSGVHLA   76 (156)
T ss_dssp             EEEEEECCCSSHHHHHHHHHHH-TTCEEEEEESSCTT
T ss_pred             ceEEEecCCChHHHHHHHHHHH-cCCeEEEEecCCcc
Confidence            44444  999999999999999 59999999988654

>d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: C-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 3
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=88.30  E-value=0.26  Score=37.94  Aligned_cols=35  Identities=14%  Similarity=0.090  Sum_probs=28.7

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      .++|||+|.+|+-+|..+.+....+|.++++.+..
T Consensus        47 kVvVIGGGdtA~D~A~~a~r~GA~~V~vi~rr~~~   81 (153)
T d1gtea3          47 AVIVLGAGDTAFDCATSALRCGARRVFLVFRKGFV   81 (153)
T ss_dssp             EEEEECSSHHHHHHHHHHHHTTCSEEEEECSSCGG
T ss_pred             EEEEECCChhHHHHHHHHHHcCCcceeEEEeCChh
Confidence            59999999999999998888534678899876543

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=87.94  E-value=0.18  Score=40.16  Aligned_cols=31  Identities=19%  Similarity=0.350  Sum_probs=28.2

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          57 FVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      +.|||+|..|...|..++. .+.+|.++|.-+
T Consensus         7 vaViGaG~mG~~iA~~~a~-~G~~V~l~D~~~   37 (186)
T d1wdka3           7 AAVLGAGIMGGGIAYQSAS-KGTPILMKDINE   37 (186)
T ss_dssp             EEEECCHHHHHHHHHHHHH-TTCCEEEECSSH
T ss_pred             EEEECcCHHHHHHHHHHHh-CCCeEEEEECCH
Confidence            7899999999999999998 599999999754

>d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Trypanosome (Leishmania mexicana) [TaxId: 5665]

Probab=86.92  E-value=0.28  Score=39.10  Aligned_cols=35  Identities=26%  Similarity=0.266  Sum_probs=29.5

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      ...-.+.|||+|.-|.++|..|+++ +.+|.+..+.
T Consensus         5 ~~m~KI~ViGaG~wGtAlA~~La~~-g~~V~l~~r~   39 (189)
T d1n1ea2           5 LYLNKAVVFGSGAFGTALAMVLSKK-CREVCVWHMN   39 (189)
T ss_dssp             CCEEEEEEECCSHHHHHHHHHHHTT-EEEEEEECSC
T ss_pred             ceeceEEEECCCHHHHHHHHHHHHc-CCeEEEEEec
Confidence            3445699999999999999999994 7899998754

>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: GDP-mannose 6-dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.95  E-value=0.3  Score=39.06  Aligned_cols=31  Identities=29%  Similarity=0.341  Sum_probs=28.1

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          57 FVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      +.|||.|-.|+++|..|++ .+.+|..+|.-.
T Consensus         3 I~ViGlG~vGl~~a~~la~-~g~~V~g~D~n~   33 (202)
T d1mv8a2           3 ISIFGLGYVGAVCAGCLSA-RGHEVIGVDVSS   33 (202)
T ss_dssp             EEEECCSTTHHHHHHHHHH-TTCEEEEECSCH
T ss_pred             EEEECCCHhHHHHHHHHHh-CCCcEEEEeCCH
Confidence            6799999999999999999 599999999654

>d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Glycerol-3- phosphate dehydrogenase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.61  E-value=0.29  Score=38.44  Aligned_cols=30  Identities=23%  Similarity=0.328  Sum_probs=26.4

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeccC
Q psy4112          57 FVIIGGGVGGSVVANRLSENPKWKVLLLESG   87 (284)
Q Consensus        57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G   87 (284)
                      +.|||+|.-|.++|..|++ .+.+|.+..+.
T Consensus         3 I~ViGaG~~GtalA~~la~-~g~~V~l~~r~   32 (180)
T d1txga2           3 VSILGAGAMGSALSVPLVD-NGNEVRIWGTE   32 (180)
T ss_dssp             EEEESCCHHHHHHHHHHHH-HCCEEEEECCG
T ss_pred             EEEECCCHHHHHHHHHHHH-CCCEEEEEEec
Confidence            6799999999999999999 48899997543

>d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Rck domain from putative potassium channel Kch
species: Escherichia coli [TaxId: 562]

Probab=85.48  E-value=0.37  Score=36.42  Aligned_cols=33  Identities=12%  Similarity=0.197  Sum_probs=29.3

Q ss_pred             cEEEECCChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          56 DFVIIGGGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        56 d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      -+||+|.|..|..+|..|.+ .+.+|++||.-++
T Consensus         5 HiII~G~g~~g~~l~~~L~~-~~~~v~vId~d~~   37 (153)
T d1id1a_           5 HFIVCGHSILAINTILQLNQ-RGQNVTVISNLPE   37 (153)
T ss_dssp             CEEEECCSHHHHHHHHHHHH-TTCCEEEEECCCH
T ss_pred             EEEEECCCHHHHHHHHHHHH-cCCCEEEEeccch
Confidence            48999999999999999999 4899999997653

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=85.43  E-value=0.4  Score=36.64  Aligned_cols=31  Identities=16%  Similarity=0.249  Sum_probs=27.5

Q ss_pred             EEEECCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          57 FVIIGGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        57 ~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      +.|||.|..|...|..|.+ .+.+|.+.++-.
T Consensus         3 I~iIG~G~mG~~lA~~l~~-~g~~V~~~d~~~   33 (165)
T d2f1ka2           3 IGVVGLGLIGASLAGDLRR-RGHYLIGVSRQQ   33 (165)
T ss_dssp             EEEECCSHHHHHHHHHHHH-TTCEEEEECSCH
T ss_pred             EEEEeecHHHHHHHHHHHH-CCCEEEEEECCc
Confidence            6799999999999999999 599999988654

>d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO)
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.39  E-value=0.41  Score=36.19  Aligned_cols=31  Identities=23%  Similarity=0.297  Sum_probs=27.0

Q ss_pred             EEEE-CCChHHHHHHHHHhcCCCCeEEEeccCC
Q psy4112          57 FVII-GGGVGGSVVANRLSENPKWKVLLLESGE   88 (284)
Q Consensus        57 ~iiv-g~G~~g~~~a~~l~~~~~~~vl~lE~G~   88 (284)
                      +.|| |+|.-|..+|.+|++ .+.+|+|..+.+
T Consensus         3 i~vigGaG~iG~alA~~la~-~G~~V~l~~R~~   34 (212)
T d1jaya_           3 VALLGGTGNLGKGLALRLAT-LGHEIVVGSRRE   34 (212)
T ss_dssp             EEEETTTSHHHHHHHHHHHT-TTCEEEEEESSH
T ss_pred             EEEEeCCcHHHHHHHHHHHH-CCCEEEEEECCH
Confidence            5788 779999999999999 599999997654

>d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.31  E-value=0.28  Score=37.18  Aligned_cols=32  Identities=25%  Similarity=0.387  Sum_probs=28.2

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCeEEEec
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWKVLLLE   85 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE   85 (284)
                      +.=.++|||+|..|...|..|.+ .+.+|.|+.
T Consensus        12 ~gkrvLViGgG~va~~ka~~Ll~-~GA~VtVva   43 (150)
T d1kyqa1          12 KDKRILLIGGGEVGLTRLYKLMP-TGCKLTLVS   43 (150)
T ss_dssp             TTCEEEEEEESHHHHHHHHHHGG-GTCEEEEEE
T ss_pred             CCCEEEEECCCHHHHHHHHHHHH-CCCEEEEEe
Confidence            34568999999999999999999 599999994

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=85.24  E-value=0.39  Score=34.60  Aligned_cols=32  Identities=25%  Similarity=0.270  Sum_probs=27.9

Q ss_pred             cccEEEECCChHHHHHHHHHhcCCCCeEEEecc
Q psy4112          54 EYDFVIIGGGVGGSVVANRLSENPKWKVLLLES   86 (284)
Q Consensus        54 ~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~   86 (284)
                      .--++|||+|..|...|..|.+ .+.+|.|+..
T Consensus        12 ~k~vlVvG~G~va~~ka~~ll~-~ga~v~v~~~   43 (113)
T d1pjqa1          12 DRDCLIVGGGDVAERKARLLLE-AGARLTVNAL   43 (113)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHH-TTBEEEEEES
T ss_pred             CCEEEEECCCHHHHHHHHHHHH-CCCeEEEEec
Confidence            4578999999999999999999 5889999753

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=83.98  E-value=0.51  Score=35.50  Aligned_cols=34  Identities=24%  Similarity=0.357  Sum_probs=29.5

Q ss_pred             ccEEEEC-CChHHHHHHHHHhcCCCCeEEEeccCCc
Q psy4112          55 YDFVIIG-GGVGGSVVANRLSENPKWKVLLLESGED   89 (284)
Q Consensus        55 ~d~iivg-~G~~g~~~a~~l~~~~~~~vl~lE~G~~   89 (284)
                      =-+.||| .|..|..+|..|.+ .++.|.+.+.-..
T Consensus        10 ~kI~iIGg~G~mG~~la~~L~~-~G~~V~~~d~~~~   44 (152)
T d2pv7a2          10 HKIVIVGGYGKLGGLFARYLRA-SGYPISILDREDW   44 (152)
T ss_dssp             CCEEEETTTSHHHHHHHHHHHT-TTCCEEEECTTCG
T ss_pred             CeEEEEcCCCHHHHHHHHHHHH-cCCCcEecccccc
Confidence            3688999 79999999999999 5999999987543

>d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Transcriptional repressor Rex, C-terminal domain
domain: Transcriptional repressor Rex, C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=81.54  E-value=0.42  Score=35.46  Aligned_cols=28  Identities=21%  Similarity=0.360  Sum_probs=21.5

Q ss_pred             CcccEEEECCChHHHHHHHHHhcCCCCe
Q psy4112          53 SEYDFVIIGGGVGGSVVANRLSENPKWK   80 (284)
Q Consensus        53 ~~~d~iivg~G~~g~~~a~~l~~~~~~~   80 (284)
                      .++-++|+|+|.+|..++..+..+.+.+
T Consensus         2 ~~~~v~I~GaG~~G~~l~~~l~~~~~~~   29 (126)
T d2dt5a2           2 RKWGLCIVGMGRLGSALADYPGFGESFE   29 (126)
T ss_dssp             SCEEEEEECCSHHHHHHHHCSCCCSSEE
T ss_pred             CCceEEEEcCCHHHHHHHHhHhhcCCcE
Confidence            3578999999999999988766543444

>d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.74  E-value=0.96  Score=33.68  Aligned_cols=38  Identities=24%  Similarity=0.313  Sum_probs=33.1

Q ss_pred             CCcccEEEECCChHHHHHHHHHhcCCCCeEEEeccCCcc
Q psy4112          52 LSEYDFVIIGGGVGGSVVANRLSENPKWKVLLLESGEDE   90 (284)
Q Consensus        52 ~~~~d~iivg~G~~g~~~a~~l~~~~~~~vl~lE~G~~~   90 (284)
                      ...=+++|||+|.+.+--|..|++- ..+|.+|-++...
T Consensus        32 frgk~V~VvGgGdsA~e~A~~L~~~-a~~V~li~r~~~~   69 (130)
T d1vdca2          32 FRNKPLAVIGGGDSAMEEANFLTKY-GSKVYIIHRRDAF   69 (130)
T ss_dssp             GTTSEEEEECCSHHHHHHHHHHTTT-SSEEEEECSSSSC
T ss_pred             hCCCEEEEEcCchHHHHHHHHHhCC-CCcEEEEEecccc
Confidence            4456899999999999999999985 7899999888764