Psyllid ID: psy4159

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170
Protein Sequence
MSASSQVTKNKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQIVMSVSLPILLRLCLTLDPYKS
Secondary Structure (PSIPRED)
ccccccccccHHHHHHHHHHHHcccccEEEEccccccccccccccccccccEEEEEEEccccccccccccccccHHHHHHccccccccccccccccccEEEEEEEcccccccccHHHHHHHHcccHHHHHHHHHHHHHccccccEEEEEEccccHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
cccccHccccHHHHHHHHHHHHHccccHHEEEEcccccccccccccccccccEEEEEEccHccccHHHHHHcHHHHHHHHHHcccccccccccHHHHcccEEEEEEcccccccEEEEEEEEEEcHHHHHHHHHHHHHHHHHcHHHHHHHHHHccHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
msassqvtkNKITLKIENILtkklnpshidvinesfshtgispseepelaSHFKIVVVSSqfenkpfiaklnpshidvinesfshtgispseepelaSHFKIVVVSsqfenkpfIAFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQIVMSVSLPILLRLCLTLDPYKS
Flexible Loop (DISEMBL)
msassqvtknkitLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQIVMSVSLPILLRLCLTLDPYKS
Low Complexity Region (SEG)
MSASSQVTKNKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQIVMSVSLPILLRLCLTLDPYKS
Disordered region (IsUnstruct)
***********ITLKIENILTKKLNPSHIDVINE***************ASHFKIVVVSSQFENKPFIAKLNPSHIDVINESF*************ASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQIVMSVSLPILLRLCLTLD****
Disordered Region (DISOPRED)
****************ENILTKKLNPSHIDVINESF******************IVVVSSQFENKPFIAKLNPSHIDV********************HFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQIVMSVSLPILLRLCLTLDPY**
Disordered Region (DISEMBL)
*********NKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQIVMSVSLPILLRLCLTLDPYKS
Disordered Region (DISPRO)
********KNKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEP*LASHFKIVVVSSQFENKPFIAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQIVMSVSLPILLRLCLTLDPYK*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSASSQVTKNKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQIVMSVSLPILLRLCLTLDPYKS
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
298709748	106	conserved unknown protein [Ectocarpus si	0.4	0.641	0.392	4e-06
299473621	171	BolA protein [Ectocarpus siliculosus]	0.288	0.286	0.490	1e-05
380027850	107	PREDICTED: bolA-like protein DDB_G027416	0.435	0.691	0.411	2e-05
301096687	126	BolA-like protein [Phytophthora infestan	0.4	0.539	0.392	4e-05
348676437	130	hypothetical protein PHYSODRAFT_316294 [	0.4	0.523	0.369	5e-05
221107609	109	PREDICTED: bolA-like protein 1-like [Hyd	0.329	0.513	0.475	6e-05
299529222	88	BolA-like protein [Comamonas testosteron	0.488	0.943	0.319	7e-05
238783611	107	hypothetical protein yberc0001_13940 [Ye	0.458	0.728	0.368	0.0001
383855412	131	PREDICTED: bolA-like protein DDB_G027416	0.364	0.473	0.417	0.0001
238751004	106	hypothetical protein yrohd0001_1360 [Yer	0.458	0.735	0.378	0.0001

>gi|298709748|emb|CBJ31551.1| conserved unknown protein [Ectocarpus siliculosus]

 Score = 56.2 bits (134), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 48/84 (57%), Gaps = 16/84 (19%)

Query: 67  FIAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSR 126
              +L PSHI+VINES +H     +E     SHFK++VVS++FE KP +A          
Sbjct: 11  LTTELTPSHIEVINESGNHGAPLGAE-----SHFKVIVVSTKFEGKPLLAR--------- 56

Query: 127 CHRLVQGALQDAGIYDIVHAIQIV 150
            HR+V  AL++  + DI HA+ + 
Sbjct: 57  -HRMVNAALKEELVEDI-HALSMT 78

Source: Ectocarpus siliculosus

Species: Ectocarpus siliculosus

Genus: Ectocarpus

Family: Ectocarpaceae

Order: Ectocarpales

Phylum: Phaeophyceae

Superkingdom: Eukaryota

>gi|299473621|emb|CBN78015.1| BolA protein [Ectocarpus siliculosus]

 Score = 55.1 bits (131), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 27/55 (49%), Positives = 40/55 (72%), Gaps = 6/55 (10%)

Query: 16  IENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAK 70
           IE  L++ L+P H++VINES  H+G  P++E    SHFK++VVS +FE KP +A+
Sbjct: 71  IEARLSEALSPVHLEVINESHMHSG--PAKE----SHFKVIVVSDEFEGKPLLAR 119

Source: Ectocarpus siliculosus

Species: Ectocarpus siliculosus

Genus: Ectocarpus

Family: Ectocarpaceae

Order: Ectocarpales

Phylum: Phaeophyceae

Superkingdom: Eukaryota

>gi|380027850|ref|XP_003697628.1| PREDICTED: bolA-like protein DDB_G0274169-like [Apis florea]

 Score = 54.3 bits (129), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 49/90 (54%), Gaps = 16/90 (17%)

Query: 65  KPFIAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVT 124
           K  I  LNPS+I+VINES+ H     SE     +HFKI+VVS  F++KP I         
Sbjct: 13  KKLIDSLNPSYIEVINESYMHNVPKGSE-----THFKIIVVSDLFKDKPLI--------- 58

Query: 125 SRCHRLVQGALQDAGIYDIVHAIQIVMSVS 154
            + HR+V   LQ A +   VHA+ I+   S
Sbjct: 59  -KRHRMVNELLQ-AELQGGVHALSIIAKTS 86

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|301096687|ref|XP_002897440.1| BolA-like protein [Phytophthora infestans T30-4] gi|262107131|gb|EEY65183.1| BolA-like protein [Phytophthora infestans T30-4]

 Score = 53.1 bits (126), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 46/84 (54%), Gaps = 16/84 (19%)

Query: 67  FIAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSR 126
            +A   P+H+DVINES  H+    SE     +HFK+VVV+ QF+ KP I          +
Sbjct: 16  LLAAFAPTHLDVINESHMHSVPKNSE-----THFKVVVVTDQFDGKPLI----------Q 60

Query: 127 CHRLVQGALQDAGIYDIVHAIQIV 150
            HR+V   LQ   + D VHA+ I+
Sbjct: 61  RHRMVNAVLQQE-LDDGVHALSIL 83

Source: Phytophthora infestans T30-4

Species: Phytophthora infestans

Genus: Phytophthora

Order: Peronosporales

Superkingdom: Eukaryota

>gi|348676437|gb|EGZ16255.1| hypothetical protein PHYSODRAFT_316294 [Phytophthora sojae]

 Score = 52.8 bits (125), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 46/84 (54%), Gaps = 16/84 (19%)

Query: 67  FIAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSR 126
            +A   P+H+DVINES  H     +E     +HFK+VVV+ QF+ KP +          +
Sbjct: 20  LLAAFTPTHLDVINESHMHNVPRGAE-----THFKVVVVAEQFDGKPLL----------Q 64

Query: 127 CHRLVQGALQDAGIYDIVHAIQIV 150
            HR+V   LQ+  + D VHA+ I+
Sbjct: 65  RHRMVNAVLQEE-LNDGVHALSIL 87

Source: Phytophthora sojae

Species: Phytophthora sojae

Genus: Phytophthora

Order: Peronosporales

Superkingdom: Eukaryota

>gi|221107609|ref|XP_002161313.1| PREDICTED: bolA-like protein 1-like [Hydra magnipapillata]

 Score = 52.4 bits (124), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 37/61 (60%), Gaps = 5/61 (8%)

Query: 10 NKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIA 69
          N I   I   LT+ L PSH+DVINESF H     +E     +HFK+VVVS +F+ KP I 
Sbjct: 7  NVIRASIIQKLTEALKPSHLDVINESFMHNVPKGAE-----THFKVVVVSKEFDGKPLIQ 61

Query: 70 K 70
          +
Sbjct: 62 R 62

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|299529222|ref|ZP_07042667.1| BolA-like protein [Comamonas testosteroni S44] gi|418531209|ref|ZP_13097126.1| BolA-like protein [Comamonas testosteroni ATCC 11996] gi|298722845|gb|EFI63757.1| BolA-like protein [Comamonas testosteroni S44] gi|371451711|gb|EHN64746.1| BolA-like protein [Comamonas testosteroni ATCC 11996]

 Score = 52.4 bits (124), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/94 (31%), Positives = 49/94 (52%), Gaps = 11/94 (11%)

Query: 56  VVVSSQFENKPFIAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFI 115
           V +S+Q  +     +L P+ ++VI+ES+ H G + + +  + +HF++ +    F+ K  +
Sbjct: 3   VTISAQAMDAALRQRLAPTRLEVIDESYQHAGHAGANDSGVGTHFRVRIAGPAFDGKTRV 62

Query: 116 AFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQI 149
           A           HRLV  ALQD  I   VHAI I
Sbjct: 63  A----------RHRLVYDALQDF-IDQGVHAIAI 85

Source: Comamonas testosteroni S44

Species: Comamonas testosteroni

Genus: Comamonas

Family: Comamonadaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|238783611|ref|ZP_04627632.1| hypothetical protein yberc0001_13940 [Yersinia bercovieri ATCC 43970] gi|238715489|gb|EEQ07480.1| hypothetical protein yberc0001_13940 [Yersinia bercovieri ATCC 43970]

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/95 (36%), Positives = 55/95 (57%), Gaps = 17/95 (17%)

Query: 55  IVVVSSQFENKPFIAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPF 114
           ++++  Q E K  +A   P H++VINES+ H   + SE     SHFKIV+VS++F+++ F
Sbjct: 2   MILIREQIEEKLKMA-FEPDHLEVINESYRHNVPAGSE-----SHFKIVIVSNKFQDQRF 55

Query: 115 IAFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQI 149
           +         SR HR + GAL D  +   VHA+ +
Sbjct: 56  L---------SR-HRAIYGALADE-LAGSVHALAL 79

Source: Yersinia bercovieri ATCC 43970

Species: Yersinia bercovieri

Genus: Yersinia

Family: Enterobacteriaceae

Order: Enterobacteriales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|383855412|ref|XP_003703206.1| PREDICTED: bolA-like protein DDB_G0274169-like [Megachile rotundata]

 Score = 51.6 bits (122), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 5/67 (7%)

Query: 4  SSQVTKNKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFE 63
          S+  T N +   I   LT  LNPSHI++INES+ H     SE     +HFK++VVS +F 
Sbjct: 23 STIATNNPVEHSIRTKLTNSLNPSHIEIINESYMHNVPKGSE-----THFKVIVVSDKFV 77

Query: 64 NKPFIAK 70
          +KP + +
Sbjct: 78 DKPLLKR 84

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|238751004|ref|ZP_04612500.1| hypothetical protein yrohd0001_1360 [Yersinia rohdei ATCC 43380] gi|238710694|gb|EEQ02916.1| hypothetical protein yrohd0001_1360 [Yersinia rohdei ATCC 43380]

 Score = 51.2 bits (121), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 54/95 (56%), Gaps = 17/95 (17%)

Query: 55  IVVVSSQFENKPFIAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPF 114
           ++++  Q E K  IA   P H++VINES+ H   + SE     SHFKIV+VS++FE++ F
Sbjct: 1   MILIREQIEEKLKIA-FEPDHLEVINESYRHNVPAGSE-----SHFKIVIVSNKFEDQRF 54

Query: 115 IAFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQI 149
           +         SR HR +  AL D  +   VHA+ +
Sbjct: 55  L---------SR-HRAIYSALADE-LASTVHALAL 78

Source: Yersinia rohdei ATCC 43380

Species: Yersinia rohdei

Genus: Yersinia

Family: Enterobacteriaceae

Order: Enterobacteriales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	170
UNIPROTKB|Q488Q2	104	bolA "BolA protein" [Colwellia	0.452	0.740	0.340	6.1e-07
TIGR_CMR|CPS_0712	104	CPS_0712 "bolA protein" [Colwe	0.452	0.740	0.340	6.1e-07
ZFIN|ZDB-GENE-040801-76	122	bola1 "bolA homolog 1 (E. coli	0.370	0.516	0.405	1.3e-06
DICTYBASE|DDB_G0274169	114	DDB_G0274169 "bolA family prot	0.329	0.491	0.409	2.6e-06
TIGR_CMR|SO_1099	106	SO_1099 "bolA protein" [Shewan	0.294	0.471	0.381	9e-06
DICTYBASE|DDB_G0290319	151	DDB_G0290319 "bolA family prot	0.311	0.350	0.370	0.00084

UNIPROTKB|Q488Q2 bolA "BolA protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 32/94 (34%), Positives = 49/94 (52%)

Query:    56 VVVSSQFENKPFIAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFI 115
             + V+S  E K  +    PSH+DVINES +H  + P  E    SHFK+V+V+  FEN+  I
Sbjct:     1 MTVASVIEQK-LLDAFQPSHLDVINESNNHN-VPPGSE----SHFKVVIVAKAFENERLI 54

Query:   116 AFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQI 149
                       + HRL+   L    + + +HA+ +
Sbjct:    55 ----------KRHRLINNVLSQE-LAEKIHALAL 77

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|CPS_0712 CPS_0712 "bolA protein" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 114 (45.2 bits), Expect = 6.1e-07, P = 6.1e-07
 Identities = 32/94 (34%), Positives = 49/94 (52%)

Query:    56 VVVSSQFENKPFIAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFI 115
             + V+S  E K  +    PSH+DVINES +H  + P  E    SHFK+V+V+  FEN+  I
Sbjct:     1 MTVASVIEQK-LLDAFQPSHLDVINESNNHN-VPPGSE----SHFKVVIVAKAFENERLI 54

Query:   116 AFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQI 149
                       + HRL+   L    + + +HA+ +
Sbjct:    55 ----------KRHRLINNVLSQE-LAEKIHALAL 77

GO:0003674 "molecular_function" evidence=ND

GO:0006950 "response to stress" evidence=ISS

GO:0008360 "regulation of cell shape" evidence=ISS

ZFIN|ZDB-GENE-040801-76 bola1 "bolA homolog 1 (E. coli)" [Danio rerio (taxid:7955)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 32/79 (40%), Positives = 43/79 (54%)

Query:    71 LNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRL 130
             LNP H++VINES  H  + P  E    SHFK++VVS QFE          L +  R HRL
Sbjct:    21 LNPEHLEVINESHMHA-VPPGSE----SHFKVLVVSLQFEG---------LSLLQR-HRL 65

Query:   131 VQGALQDAGIYDIVHAIQI 149
             V   L++  +   +HA+ I
Sbjct:    66 VNETLKEE-LSTCIHALSI 83

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0274169 DDB_G0274169 "bolA family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 108 (43.1 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 25/61 (40%), Positives = 37/61 (60%)

Query:     8 TKNKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPF 67
             T   I  +I+ +LTK+LNP ++++INES+ H     SE     SHFK+ +VS +FE    
Sbjct:     3 TIGPIENEIKELLTKELNPINLEIINESYMHNVPKGSE-----SHFKVKIVSEKFETLSM 57

Query:    68 I 68
             I
Sbjct:    58 I 58

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

TIGR_CMR|SO_1099 SO_1099 "bolA protein" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 103 (41.3 bits), Expect = 9.0e-06, P = 9.0e-06
 Identities = 21/55 (38%), Positives = 35/55 (63%)

Query:    16 IENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAK 70
             I   LT+  +P+H++V+NES  H  + P+ E    +HFK+VV+S +FE    +A+
Sbjct:    14 INQKLTESFSPTHLEVLNESHRHH-VPPNSE----THFKVVVISDEFEGLRLLAR 63

GO:0006950 "response to stress" evidence=ISS

GO:0008360 "regulation of cell shape" evidence=ISS

DICTYBASE|DDB_G0290319 DDB_G0290319 "bolA family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 97 (39.2 bits), Expect = 0.00084, P = 0.00084
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query:     9 KNKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFI 68
             KN I  K+ N    +  P H+DV+NES+ H+    SE     +HFK+++VS  F  K  +
Sbjct:    42 KNTIIEKLSN----QFKPIHLDVVNESYMHSVPRGSE-----THFKVIIVSDIFNGKSVV 92

Query:    69 AK 70
             A+
Sbjct:    93 AQ 94


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.133   0.369    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      170       170   0.00086  108 3  11 22  0.39    32
                                                     31  0.47    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  519 (55 KB)
  Total size of DFA:  119 KB (2078 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.71u 0.08s 16.79t   Elapsed:  00:00:05
  Total cpu time:  16.71u 0.08s 16.79t   Elapsed:  00:00:07
  Start:  Thu Aug 15 13:02:18 2013   End:  Thu Aug 15 13:02:25 2013

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	170
pfam01722	72	pfam01722, BolA, BolA-like protein	7e-12
COG0271	90	COG0271, BolA, Stress-induced morphogen (activity	1e-09
COG0271	90	COG0271, BolA, Stress-induced morphogen (activity	1e-08
pfam01722	72	pfam01722, BolA, BolA-like protein	3e-08
PRK11628	105	PRK11628, PRK11628, transcriptional regulator BolA	4e-07
PRK11628	105	PRK11628, PRK11628, transcriptional regulator BolA	1e-06

>gnl|CDD|216662 pfam01722, BolA, BolA-like protein

 Score = 57.6 bits (140), Expect = 7e-12
 Identities = 28/82 (34%), Positives = 39/82 (47%), Gaps = 21/82 (25%)

Query: 69  AKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCH 128
           A L P+H++V +ES    G          SHFK+VVVS  FE K  +            H
Sbjct: 5   AALPPAHLEVEDESHKGDG----------SHFKVVVVSDAFEGKSLVK----------RH 44

Query: 129 RLVQGALQDAGIYDIVHAIQIV 150
           RLV  AL++  +   +HA+ I 
Sbjct: 45  RLVYAALKEE-LASGIHALSIK 65

This family consist of the morphoprotein BolA from E. coli and its various homologues. In E. coli over expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase. BolA is also induced by stress during early stages of growth and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5. Length = 72

>gnl|CDD|223349 COG0271, BolA, Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]

 Score = 52.4 bits (126), Expect = 1e-09
 Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 15/82 (18%)

Query: 68  IAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRC 127
            A   PS +++I+ES  H G +        SHFK+V+VS  F+ K  +A         R 
Sbjct: 13  RAAFPPSFLEIIDESHRHHGHAGGGG----SHFKVVIVSEAFQGKSLVA---------R- 58

Query: 128 HRLVQGALQDAGIYDIVHAIQI 149
           HRLV  AL+D  +   +HA+ +
Sbjct: 59  HRLVYSALKDE-LSGGIHALAL 79

Length = 90

>gnl|CDD|223349 COG0271, BolA, Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]

 Score = 49.7 bits (119), Expect = 1e-08
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 15 KIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIA 69
          +IE  L     PS +++I+ES  H G +        SHFK+V+VS  F+ K  +A
Sbjct: 7  RIEKKLRAAFPPSFLEIIDESHRHHGHAGGGG----SHFKVVIVSEAFQGKSLVA 57

Length = 90

>gnl|CDD|216662 pfam01722, BolA, BolA-like protein

 Score = 47.9 bits (115), Expect = 3e-08
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 10/52 (19%)

Query: 19 ILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAK 70
          +L   L P+H++V +ES    G          SHFK+VVVS  FE K  + +
Sbjct: 2  LLEAALPPAHLEVEDESHKGDG----------SHFKVVVVSDAFEGKSLVKR 43

This family consist of the morphoprotein BolA from E. coli and its various homologues. In E. coli over expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase. BolA is also induced by stress during early stages of growth and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5. Length = 72

>gnl|CDD|183243 PRK11628, PRK11628, transcriptional regulator BolA; Provisional

 Score = 45.9 bits (109), Expect = 4e-07
 Identities = 27/92 (29%), Positives = 47/92 (51%), Gaps = 17/92 (18%)

Query: 56  VVVSSQFENKPFIAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFI 115
           +++  Q E K   A   P  ++V++ES+ H   + SE     SHFK+V+VS +F  + F+
Sbjct: 1   MMIREQIEEK-LRAAFQPVFLEVVDESYRHNVPAGSE-----SHFKVVLVSDRFTGERFL 54

Query: 116 AFIIILEVTSRCHRLVQGALQDAGIYDIVHAI 147
                    +R HR++   L +  +   VHA+
Sbjct: 55  ---------NR-HRMIYSTLAEE-LSTTVHAL 75

Length = 105

>gnl|CDD|183243 PRK11628, PRK11628, transcriptional regulator BolA; Provisional

 Score = 44.4 bits (105), Expect = 1e-06
 Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 5/56 (8%)

Query: 15 KIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAK 70
          +IE  L     P  ++V++ES+ H   + SE     SHFK+V+VS +F  + F+ +
Sbjct: 6  QIEEKLRAAFQPVFLEVVDESYRHNVPAGSE-----SHFKVVLVSDRFTGERFLNR 56

Length = 105

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	170
PRK11628	105	transcriptional regulator BolA; Provisional	99.96
COG0271	90	BolA Stress-induced morphogen (activity unknown) [	99.96
KOG2313|consensus	100		99.95
PF01722	76	BolA: BolA-like protein; InterPro: IPR002634 This	99.95
KOG3348|consensus	85		99.9
COG5007	80	Predicted transcriptional regulator, BolA superfam	99.86
COG5007	80	Predicted transcriptional regulator, BolA superfam	97.83
COG0271	90	BolA Stress-induced morphogen (activity unknown) [	97.31
KOG2313|consensus	100		96.98
PF01722	76	BolA: BolA-like protein; InterPro: IPR002634 This	96.07
PRK11628	105	transcriptional regulator BolA; Provisional	95.94
KOG3348|consensus	85		93.42

>PRK11628 transcriptional regulator BolA; Provisional

Probab=99.96  E-value=5.9e-30  Score=192.37  Aligned_cols=95  Identities=26%  Similarity=0.365  Sum_probs=83.3

Q ss_pred             chHHHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeeccccCCCCC
Q psy4159          10 NKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESFSHTGIS   89 (170)
Q Consensus        10 ~~~~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS~~HagHa   89 (170)
                      |.+.++|+++|+++|+|.+|+|+|+|++|+||.|                                              
T Consensus         1 mm~~~~I~~~L~~~l~~~~l~V~d~S~~H~~~~g----------------------------------------------   34 (105)
T PRK11628          1 MMIREQIEEKLRAAFQPVFLEVVDESYRHNVPAG----------------------------------------------   34 (105)
T ss_pred             CCcHHHHHHHHHhhCCCcEEEEEECcccccCCCC----------------------------------------------
Confidence            4567899999999999999999999999987643                                              


Q ss_pred             CCCCCCCCCeEEEEEEcCCCCCCCchhhhhhhhhchhHHHHHHHHHHhhcCCCCccEEEeeecCcHHHHHh-ccCCCCC
Q psy4159          90 PSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQIVMSVSLPILLR-LCLTLDP  167 (170)
Q Consensus        90 ~~~~~~~~~hf~i~ivs~~F~g~~~i~~~~~~~~~~~rhr~V~~~L~~~~~~~~iHAl~i~~~~~~e~~~~-~~~~~~~  167 (170)
                            +++||+|+|||+.|+||++|          +|||+||++|+++|.++ ||||+|+++||+||..+ ...+.+|
T Consensus        35 ------~~~Hf~v~IVS~~F~G~s~v----------~RHRlVy~~L~~~i~~~-IHALsi~t~tp~Ew~~~~~~~~~sp   96 (105)
T PRK11628         35 ------SESHFKVVLVSDRFTGERFL----------NRHRMIYSTLAEELSTT-VHALALHTYTIKEWEGLQDTVFASP   96 (105)
T ss_pred             ------CCceEEEEEEChHhCCCCHH----------HHHHHHHHHHHHHHhCC-ccceeeecCCHHHHHHhhCCCCCCC
Confidence                  27899999999999999999          99999999999999965 99999999999999864 3344444

>COG0271 BolA Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]

Probab=99.96  E-value=7.7e-29  Score=181.81  Aligned_cols=84  Identities=33%  Similarity=0.455  Sum_probs=77.9

Q ss_pred             HHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeeccccCCCCCCCCC
Q psy4159          14 LKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESFSHTGISPSEE   93 (170)
Q Consensus        14 ~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS~~HagHa~~~~   93 (170)
                      ++|+++|+++|+|.+++|+|+|++|.||+|                                                  
T Consensus         6 ~~Ie~~l~~~f~p~~l~i~deS~~h~~~~~--------------------------------------------------   35 (90)
T COG0271           6 ERIEKKLRAAFPPSFLEIIDESHRHHGHAG--------------------------------------------------   35 (90)
T ss_pred             HHHHHHHHhcCCCceEEEEecccccccCCC--------------------------------------------------
Confidence            589999999999999999999999988753                                                  


Q ss_pred             CCCCCeEEEEEEcCCCCCCCchhhhhhhhhchhHHHHHHHHHHhhcCCCCccEEEeeecCcHHHHH
Q psy4159          94 PELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQIVMSVSLPILL  159 (170)
Q Consensus        94 ~~~~~hf~i~ivs~~F~g~~~i~~~~~~~~~~~rhr~V~~~L~~~~~~~~iHAl~i~~~~~~e~~~  159 (170)
                       +|++||+|+|||++|+|||+|          +|||+||++|+|+|..+ ||||+|+++||.||..
T Consensus        36 -g~~~Hf~i~IVS~~F~G~s~v----------~rHr~V~~~L~del~~~-iHALal~t~t~~e~~~   89 (90)
T COG0271          36 -GGGSHFKVVIVSEAFQGKSLV----------ARHRLVYSALKDELSGG-IHALALHTYTPEEWKG   89 (90)
T ss_pred             -CCCCeEEEEEEchhhCCccHH----------HHHHHHHHHHHHHHhcc-ceeeEeEeeccchhcc
Confidence             248999999999999999999          99999999999999998 9999999999998864

>KOG2313|consensus

Probab=99.95  E-value=3.5e-28  Score=179.72  Aligned_cols=94  Identities=29%  Similarity=0.404  Sum_probs=85.2

Q ss_pred             CCCchHHHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeeccccCC
Q psy4159           7 VTKNKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESFSHT   86 (170)
Q Consensus         7 ~~~~~~~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS~~Ha   86 (170)
                      ..-|++..+|+++|..+|+|..|+++|+|++|+||++.++                                 +      
T Consensus         6 ~~~g~~~~ri~~~l~~~lkp~~le~~n~S~~hagH~~~kg---------------------------------~------   46 (100)
T KOG2313|consen    6 GIYGPRESRIREKLFEALKPLNLELYNESHQHAGHAVPKG---------------------------------M------   46 (100)
T ss_pred             cccCcHHHHHHHHhHhhcCcceEEEeeccccccccccccC---------------------------------C------
Confidence            4458999999999999999999999999999999986431                                 0      


Q ss_pred             CCCCCCCCCCCCeEEEEEEcCCCCCCCchhhhhhhhhchhHHHHHHHHHHhhcCC-CCccEEEeeecCcHHH
Q psy4159          87 GISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQDAGIY-DIVHAIQIVMSVSLPI  157 (170)
Q Consensus        87 gHa~~~~~~~~~hf~i~ivs~~F~g~~~i~~~~~~~~~~~rhr~V~~~L~~~~~~-~~iHAl~i~~~~~~e~  157 (170)
                             .+.++||+|.|||++|+|++++          +||||||++|+||+.+ | +|||+|.++||.||
T Consensus        47 -------~~~EtHFrv~vVS~~FeG~s~v----------~RHRlVy~~L~eEl~~~g-vHAL~i~aKTP~e~  100 (100)
T KOG2313|consen   47 -------DGAETHFRVEVVSSAFEGLSLV----------KRHRLVYKALKEELAGTG-VHALSIMAKTPSEV  100 (100)
T ss_pred             -------CCCccEEEEEEechhhCCccHH----------HHHHHHHHHHHHHhhccc-eeEEEeeccCCCCC
Confidence                   1238999999999999999999          9999999999999998 7 99999999999998

>PF01722 BolA: BolA-like protein; InterPro: IPR002634 This family consist of the morpho-protein BolA from Escherichia coli and its various homologs

Probab=99.95  E-value=2e-28  Score=174.28  Aligned_cols=50  Identities=42%  Similarity=0.541  Sum_probs=47.3

Q ss_pred             CCeEEEEEEcCCCCCCCchhhhhhhhhchhHHHHHHHHHHhhcCCCCccEEEeeecCcHHH
Q psy4159          97 ASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQIVMSVSLPI  157 (170)
Q Consensus        97 ~~hf~i~ivs~~F~g~~~i~~~~~~~~~~~rhr~V~~~L~~~~~~~~iHAl~i~~~~~~e~  157 (170)
                      ++||+|+|||+.|+|||+|          +|||+||++|+|+|.++ ||||+|+|+||+||
T Consensus        27 ~sHf~i~IvS~~F~g~s~i----------~rhr~V~~~L~~~i~~~-iHAlsi~t~tp~Ew   76 (76)
T PF01722_consen   27 GSHFKIIIVSDEFEGKSRI----------KRHRLVYKALKDEIKDG-IHALSIKTYTPEEW   76 (76)
T ss_dssp             SSEEEEEEECGGGTTS-HH----------HHHHHHHHHTHHHHGCT-CSEEEEEEE-HHHH
T ss_pred             CceEEEEEEcHHhCCCCHH----------HHHHHHHHHHHHHhcCC-ceEEEEEcCCcccC
Confidence            8999999999999999999          99999999999999998 99999999999999

In E. coli, over-expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division []. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase []. BolA is also induced by stress during early stages of growth [] and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5 [, ].; PDB: 1XS3_A 1V60_A 3O2E_A 1NY8_A 3TR3_A 2KZ0_A 2DHM_A 2KDN_A 1V9J_A.

>KOG3348|consensus

Probab=99.90  E-value=7.2e-24  Score=152.96  Aligned_cols=80  Identities=30%  Similarity=0.413  Sum_probs=73.3

Q ss_pred             chHHHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeeccccCCCCC
Q psy4159          10 NKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESFSHTGIS   89 (170)
Q Consensus        10 ~~~~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS~~HagHa   89 (170)
                      ++-+++|+++|+++|.|.+++|.|.|+                                                     
T Consensus         2 ~~~e~~l~~~L~~~l~p~~v~V~D~Sg-----------------------------------------------------   28 (85)
T KOG3348|consen    2 TVTEERLEELLTEALEPEHVEVQDVSG-----------------------------------------------------   28 (85)
T ss_pred             cchHHHHHHHHHhhcCceEEEEEEcCC-----------------------------------------------------
Confidence            356888999999999999999999874                                                     


Q ss_pred             CCCCCCCCCeEEEEEEcCCCCCCCchhhhhhhhhchhHHHHHHHHHHhhcCCCCccEEEeeecCcHHHHH
Q psy4159          90 PSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQIVMSVSLPILL  159 (170)
Q Consensus        90 ~~~~~~~~~hf~i~ivs~~F~g~~~i~~~~~~~~~~~rhr~V~~~L~~~~~~~~iHAl~i~~~~~~e~~~  159 (170)
                           |||+.|.|+|||+.|+||++|          +|||+||.+|+++|+.  |||++++++||++|.+
T Consensus        29 -----GCG~~F~v~IvS~~FeGKs~L----------~rHRlVN~~L~Eeik~--iHalt~kt~t~~~w~~   81 (85)
T KOG3348|consen   29 -----GCGSMFDVVIVSAAFEGKSLL----------ARHRLVNSILAEEIKE--IHALTIKTYTPEEWSK   81 (85)
T ss_pred             -----CccceEEEEEEccccCChHHH----------HHHHHHHHHHHHHHHH--HhhheeeecChhhhcc
Confidence                 258999999999999999999          9999999999999998  9999999999999975

>COG5007 Predicted transcriptional regulator, BolA superfamily [Transcription]

Probab=99.86  E-value=5.3e-22  Score=141.73  Aligned_cols=79  Identities=19%  Similarity=0.234  Sum_probs=74.1

Q ss_pred             eChhhhccccccccCCceeeeeeccccCCCCCCCCCCCCCCeEEEEEEcCCCCCCCchhhhhhhhhchhHHHHHHHHHHh
Q psy4159          58 VSSQFENKPFIAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQD  137 (170)
Q Consensus        58 VS~eFIgkkLiarhr~~~leV~DeS~~HagHa~~~~~~~~~hf~i~ivs~~F~g~~~i~~~~~~~~~~~rhr~V~~~L~~  137 (170)
                      |..+.|+..|.+.++..+++|+.+               |+||.+++||+.|+||++|          +|||+||+.|.+
T Consensus         1 M~~e~Ik~ll~~~L~~e~v~V~Gd---------------g~Hf~vi~Vs~~F~g~srv----------krqq~vYApL~~   55 (80)
T COG5007           1 MDNEEIKSLLENALPLEEVEVEGD---------------GSHFQVIAVSEEFAGKSRV----------KRQQLVYAPLMA   55 (80)
T ss_pred             CCHHHHHHHHHhcCCccEEEEecC---------------CceEEEEEehHhhcCccHH----------HHHHHHHHHHHH
Confidence            467889999999999999999876               8999999999999999999          999999999999


Q ss_pred             hcCCCCccEEEeeecCcHHHHHhc
Q psy4159         138 AGIYDIVHAIQIVMSVSLPILLRL  161 (170)
Q Consensus       138 ~~~~~~iHAl~i~~~~~~e~~~~~  161 (170)
                      .|..+.|||++|+++||+||.++.
T Consensus        56 ~i~~~~IHAlsikt~Tp~eW~~~~   79 (80)
T COG5007          56 YIADNEIHALSIKTYTPAEWARDR   79 (80)
T ss_pred             HhhcCceEEEEeeecCHHHhhhcc
Confidence            999888999999999999999863

>COG5007 Predicted transcriptional regulator, BolA superfamily [Transcription]

Probab=97.83  E-value=8.6e-06  Score=58.63  Aligned_cols=56  Identities=20%  Similarity=0.338  Sum_probs=48.8

Q ss_pred             HHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeeccc
Q psy4159          13 TLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESF   83 (170)
Q Consensus        13 ~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS~   83 (170)
                      .+.|++.|+++|+-.+++|..|               ++||.+++||++|.+++.++|++.+|--+-+-..
T Consensus         3 ~e~Ik~ll~~~L~~e~v~V~Gd---------------g~Hf~vi~Vs~~F~g~srvkrqq~vYApL~~~i~   58 (80)
T COG5007           3 NEEIKSLLENALPLEEVEVEGD---------------GSHFQVIAVSEEFAGKSRVKRQQLVYAPLMAYIA   58 (80)
T ss_pred             HHHHHHHHHhcCCccEEEEecC---------------CceEEEEEehHhhcCccHHHHHHHHHHHHHHHhh
Confidence            5789999999999999999754               3899999999999999999999998866655543

>COG0271 BolA Stress-induced morphogen (activity unknown) [Signal transduction mechanisms]

Probab=97.31  E-value=3.6e-05  Score=56.73  Aligned_cols=65  Identities=26%  Similarity=0.366  Sum_probs=48.7

Q ss_pred             hHHHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeeccc
Q psy4159          11 KITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESF   83 (170)
Q Consensus        11 ~~~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS~   83 (170)
                      -+++++++.+...+ -...+--.--..|+|++|       +||+|+|||+.|.|+++++|||.++-.+.|+-.
T Consensus         7 ~Ie~~l~~~f~p~~-l~i~deS~~h~~~~~g~~-------~Hf~i~IVS~~F~G~s~v~rHr~V~~~L~del~   71 (90)
T COG0271           7 RIEKKLRAAFPPSF-LEIIDESHRHHGHAGGGG-------SHFKVVIVSEAFQGKSLVARHRLVYSALKDELS   71 (90)
T ss_pred             HHHHHHHhcCCCce-EEEEecccccccCCCCCC-------CeEEEEEEchhhCCccHHHHHHHHHHHHHHHHh
Confidence            36677777776555 333333343445666677       899999999999999999999999988888743

>KOG2313|consensus

Probab=96.98  E-value=8.8e-05  Score=55.46  Aligned_cols=44  Identities=23%  Similarity=0.286  Sum_probs=36.6

Q ss_pred             CCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeecc
Q psy4159          37 SHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINES   82 (170)
Q Consensus        37 ~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS   82 (170)
                      .|++..|+.+  .|+||+|.|||++|.++++++|||.+|-.+.||-
T Consensus        39 gH~~~kg~~~--~EtHFrv~vVS~~FeG~s~v~RHRlVy~~L~eEl   82 (100)
T KOG2313|consen   39 GHAVPKGMDG--AETHFRVEVVSSAFEGLSLVKRHRLVYKALKEEL   82 (100)
T ss_pred             ccccccCCCC--CccEEEEEEechhhCCccHHHHHHHHHHHHHHHh
Confidence            4666665322  4799999999999999999999999998888874

>PF01722 BolA: BolA-like protein; InterPro: IPR002634 This family consist of the morpho-protein BolA from Escherichia coli and its various homologs

Probab=96.07  E-value=0.00072  Score=48.05  Aligned_cols=59  Identities=36%  Similarity=0.501  Sum_probs=51.3

Q ss_pred             HHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeecc
Q psy4159          19 ILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINES   82 (170)
Q Consensus        19 kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS   82 (170)
                      ||+++|+|.+|+|+|+|++|+||++     +++||+|.|||++|.|+++++|||.+|-.+.|+-
T Consensus         1 Kl~~~l~~~~l~V~d~S~~H~~h~~-----g~sHf~i~IvS~~F~g~s~i~rhr~V~~~L~~~i   59 (76)
T PF01722_consen    1 KLKAALPPTHLEVEDESHKHAGHAG-----GGSHFKIIIVSDEFEGKSRIKRHRLVYKALKDEI   59 (76)
T ss_dssp             HHHHHHTTSEEEEEE-SSSSSS-CC-----SSSEEEEEEECGGGTTS-HHHHHHHHHHHTHHHH
T ss_pred             ChhHhCCCcEEEEEECcccccCCCC-----CCceEEEEEEcHHhCCCCHHHHHHHHHHHHHHHh
Confidence            6889999999999999999999983     4899999999999999999999999988887764

In E. coli, over-expression of this protein causes round morphology and may be involved in switching the cell between elongation and septation systems during cell division []. The expression of BolA is growth rate regulated and is induced during the transition into the the stationary phase []. BolA is also induced by stress during early stages of growth [] and may have a general role in stress response. It has also been suggested that BolA can induce the transcription of penicillin binding proteins 6 and 5 [, ].; PDB: 1XS3_A 1V60_A 3O2E_A 1NY8_A 3TR3_A 2KZ0_A 2DHM_A 2KDN_A 1V9J_A.

>PRK11628 transcriptional regulator BolA; Provisional

Probab=95.94  E-value=0.0012  Score=49.83  Aligned_cols=65  Identities=20%  Similarity=0.246  Sum_probs=45.1

Q ss_pred             chHHHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeeccc
Q psy4159          10 NKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESF   83 (170)
Q Consensus        10 ~~~~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS~   83 (170)
                      -.+.++|+..|... .-...+.-..-..|.|-.+        ||+|+|||+.|.|+++++|||.+|-.+.++-.
T Consensus         5 ~~I~~~L~~~l~~~-~l~V~d~S~~H~~~~g~~~--------Hf~v~IVS~~F~G~s~v~RHRlVy~~L~~~i~   69 (105)
T PRK11628          5 EQIEEKLRAAFQPV-FLEVVDESYRHNVPAGSES--------HFKVVLVSDRFTGERFLNRHRMIYSTLAEELS   69 (105)
T ss_pred             HHHHHHHHhhCCCc-EEEEEECcccccCCCCCCc--------eEEEEEEChHhCCCCHHHHHHHHHHHHHHHHh
Confidence            35778888888532 2222222211133666666        89999999999999999999999877777643

>KOG3348|consensus

Probab=93.42  E-value=0.0093  Score=43.56  Aligned_cols=31  Identities=32%  Similarity=0.487  Sum_probs=26.9

Q ss_pred             ceEEEEEeChhhhccccccccCCceeeeeec
Q psy4159          51 SHFKIVVVSSQFENKPFIAKLNPSHIDVINE   81 (170)
Q Consensus        51 sHF~v~IVS~eFIgkkLiarhr~~~leV~De   81 (170)
                      +.|+|.|||+.|.|+++++|||.+.-.+.++
T Consensus        32 ~~F~v~IvS~~FeGKs~L~rHRlVN~~L~Ee   62 (85)
T KOG3348|consen   32 SMFDVVIVSAAFEGKSLLARHRLVNSILAEE   62 (85)
T ss_pred             ceEEEEEEccccCChHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999876555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	170
2dhm_A	107	Protein BOLA; stationary-phase, stress-induced, mo	3e-14
2dhm_A	107	Protein BOLA; stationary-phase, stress-induced, mo	4e-13
1v60_A	123	BOLA1, riken cDNA 1810037G04; stationary phase mor	1e-13
1v60_A	123	BOLA1, riken cDNA 1810037G04; stationary phase mor	3e-12
1v9j_A	113	BOLA-like protein riken cDNA 1110025L05; stationar	5e-12
1v9j_A	113	BOLA-like protein riken cDNA 1110025L05; stationar	6e-11
2kdn_A	108	Putative uncharacterized protein PFE0790C; solutio	3e-11
2kdn_A	108	Putative uncharacterized protein PFE0790C; solutio	5e-10
3o2e_A	105	BOLA-like protein; ssgcid, iodide, SAD, seattle st	9e-10
3o2e_A	105	BOLA-like protein; ssgcid, iodide, SAD, seattle st	1e-08
3tr3_A	82	BOLA; cellular processes, stress-induced, unknown	1e-06
3tr3_A	82	BOLA; cellular processes, stress-induced, unknown	1e-05
1xs3_A	80	Hypothetical protein XC975; BOLA-like, structural	1e-05
1xs3_A	80	Hypothetical protein XC975; BOLA-like, structural	1e-04
1ny8_A	97	Protein YRBA; structure, autoassign, autostructure	2e-05
1ny8_A	97	Protein YRBA; structure, autoassign, autostructure	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
2kz0_A	76	BOLA family protein; BOLA protein family, human mo	2e-04

>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural GEN NPPSFA; NMR {Escherichia coli str} Length = 107

 Score = 63.9 bits (156), Expect = 3e-14
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 16/81 (19%)

Query: 69  AKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCH 128
           A   P  ++V++ES+ H   + SE     SHFK+V+VS +F  + F+            H
Sbjct: 20  AAFQPVFLEVVDESYRHNVPAGSE-----SHFKVVLVSDRFTGERFLN----------RH 64

Query: 129 RLVQGALQDAGIYDIVHAIQI 149
           R++   L +  +   VHA+ +
Sbjct: 65  RMIYSTLAEE-LSTTVHALAL 84

>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural GEN NPPSFA; NMR {Escherichia coli str} Length = 107

 Score = 61.2 bits (149), Expect = 4e-13
 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 5/67 (7%)

Query: 3  ASSQVTKNKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQF 62
           SS  +   I  +IE  L     P  ++V++ES+ H   + SE     SHFK+V+VS +F
Sbjct: 1  GSSGSSGMMIRERIEEKLRAAFQPVFLEVVDESYRHNVPAGSE-----SHFKVVLVSDRF 55

Query: 63 ENKPFIA 69
            + F+ 
Sbjct: 56 TGERFLN 62

>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 123

 Score = 63.2 bits (154), Expect = 1e-13
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 16/81 (19%)

Query: 69  AKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCH 128
             L+P  +++ NES  H   + SE     +HF++ VVSS+FE    +            H
Sbjct: 37  QALSPEVLELRNESGGHAVPAGSE-----THFRVAVVSSRFEGMSPLQ----------RH 81

Query: 129 RLVQGALQDAGIYDIVHAIQI 149
           RLV  AL +  +   VHA+ I
Sbjct: 82  RLVHEALSEE-LAGPVHALAI 101

>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 123

 Score = 59.4 bits (144), Expect = 3e-12
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 5/55 (9%)

Query: 15 KIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIA 69
           I   L + L+P  +++ NES  H   + SE     +HF++ VVSS+FE    + 
Sbjct: 30 AIRAKLEQALSPEVLELRNESGGHAVPAGSE-----THFRVAVVSSRFEGMSPLQ 79

>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} SCOP: d.52.6.1 Length = 113

 Score = 58.7 bits (142), Expect = 5e-12
 Identities = 19/83 (22%), Positives = 33/83 (39%), Gaps = 26/83 (31%)

Query: 69  AKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCH 128
             L   H++V + + +             + F+++VVS++FE KP +            H
Sbjct: 41  QDLEAEHVEVEDTTLNRCA----------TSFRVLVVSAKFEGKPLLQ----------RH 80

Query: 129 RLVQGALQD--AGIYDIVHAIQI 149
           RLV   L +    I    HA + 
Sbjct: 81  RLVNECLAEELPHI----HAFEQ 99

>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} SCOP: d.52.6.1 Length = 113

 Score = 55.6 bits (134), Expect = 6e-11
 Identities = 12/55 (21%), Positives = 26/55 (47%), Gaps = 10/55 (18%)

Query: 15 KIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIA 69
           +   L + L   H++V + + +             + F+++VVS++FE KP + 
Sbjct: 34 YLREKLRQDLEAEHVEVEDTTLNRCA----------TSFRVLVVSAKFEGKPLLQ 78

>2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum} Length = 108

 Score = 56.3 bits (136), Expect = 3e-11
 Identities = 24/115 (20%), Positives = 43/115 (37%), Gaps = 28/115 (24%)

Query: 37  SHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESFSHTGISPSEEPEL 96
           SH     S   E       + +    E+K   + L P+ ++++++S              
Sbjct: 4   SHHHHHHSSGRENLYFQGHMCIQKVIEDK-LSSALKPTFLELVDKSCGC----------- 51

Query: 97  ASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQD--AGIYDIVHAIQI 149
            + F  V+VS+ FE+K  +            HRLV   L++    I    HA  +
Sbjct: 52  GTSFDAVIVSNNFEDKKLLD----------RHRLVNTILKEELQNI----HAFSM 92

>2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum} Length = 108

 Score = 52.8 bits (127), Expect = 5e-10
 Identities = 13/55 (23%), Positives = 27/55 (49%), Gaps = 11/55 (20%)

Query: 15 KIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIA 69
           IE+ L+  L P+ ++++++S               + F  V+VS+ FE+K  + 
Sbjct: 28 VIEDKLSSALKPTFLELVDKSCGC-----------GTSFDAVIVSNNFEDKKLLD 71

>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis} Length = 105

 Score = 52.5 bits (126), Expect = 9e-10
 Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 23/81 (28%)

Query: 69  AKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCH 128
           + L+P  + V + S               + F   +VS QFE K  +             
Sbjct: 34  SMLSPQFLKVTDNSGGC-----------GAAFNAYIVSQQFEGKGLLD----------RQ 72

Query: 129 RLVQGALQDAGIYDIVHAIQI 149
           RLV  A+        +HA  +
Sbjct: 73  RLVNSAIAAE--MPQIHAFTM 91

>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis} Length = 105

 Score = 49.4 bits (118), Expect = 1e-08
 Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 11/55 (20%)

Query: 15 KIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIA 69
           +E  L   L+P  + V + S               + F   +VS QFE K  + 
Sbjct: 27 IVEERLRSMLSPQFLKVTDNSGGC-----------GAAFNAYIVSQQFEGKGLLD 70

>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii} Length = 82

 Score = 43.1 bits (102), Expect = 1e-06
 Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 25/81 (30%)

Query: 69  AKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCH 128
             L+ S +                      HF+ VV+   FE +  +            H
Sbjct: 16  TGLSESRVISAEGD--------------GHHFEAVVLCPTFEGQTALT----------RH 51

Query: 129 RLVQGALQDAGIYDIVHAIQI 149
           RLV  AL    +   +HA+ +
Sbjct: 52  RLVYNALGSH-MQSDIHALSL 71

>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii} Length = 82

 Score = 40.8 bits (96), Expect = 1e-05
 Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 14/56 (25%)

Query: 15 KIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAK 70
           I+  +   L+ S +                      HF+ VV+   FE +  + +
Sbjct: 9  DIKQWIETGLSESRVISAEGD--------------GHHFEAVVLCPTFEGQTALTR 50

>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic} Length = 80

 Score = 40.8 bits (96), Expect = 1e-05
 Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 25/81 (30%)

Query: 69  AKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCH 128
           + L  + +DV  E                 HF+  VVS  F  K  +A           H
Sbjct: 17  SGLPEARVDVQGED--------------GVHFEATVVSPAFVGKAPLA----------RH 52

Query: 129 RLVQGALQDAGIYDIVHAIQI 149
           R+V   L +  +   +HA+Q+
Sbjct: 53  RMVYATLGEL-MGGAIHALQL 72

>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic} Length = 80

 Score = 37.7 bits (88), Expect = 1e-04
 Identities = 13/56 (23%), Positives = 20/56 (35%), Gaps = 14/56 (25%)

Query: 15 KIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAK 70
           I  ++   L  + +DV  E                 HF+  VVS  F  K  +A+
Sbjct: 10 TIRKLIESGLPEARVDVQGED--------------GVHFEATVVSPAFVGKAPLAR 51

>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1 Length = 97

 Score = 40.5 bits (95), Expect = 2e-05
 Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 25/81 (30%)

Query: 69  AKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCH 128
             L+   + V  +                SHF+++ V   F+    +             
Sbjct: 17  NALSLQEVHVSGDG---------------SHFQVIAVGELFDGMSRVK----------KQ 51

Query: 129 RLVQGALQDAGIYDIVHAIQI 149
           + V G L +    + +HA+ I
Sbjct: 52  QTVYGPLMEYIADNRIHAVSI 72

>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1 Length = 97

 Score = 38.2 bits (89), Expect = 1e-04
 Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 15/56 (26%)

Query: 15 KIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAK 70
          +I+++L   L+   + V  +                SHF+++ V   F+    + K
Sbjct: 10 EIQSVLMNALSLQEVHVSGDG---------------SHFQVIAVGELFDGMSRVKK 50

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 7e-05
 Identities = 25/138 (18%), Positives = 52/138 (37%), Gaps = 37/138 (26%)

Query: 23  KLNPSHIDVINESFSHTG--ISPSEEPELASHFKIVVVSSQFENKPFI-AKLNPSHIDVI 79
            L P ++D     +SH G  +   E PE  + F++V     F +  F+  K+        
Sbjct: 463 DLIPPYLD--QYFYSHIGHHLKNIEHPERMTLFRMV-----FLDFRFLEQKIR------- 508

Query: 80  NESFSHTGISPSEEPELASHFKIVVVSSQF--ENKP--------FIAFIIILE---VTSR 126
                H   + +    + +  + +     +  +N P         + F+  +E   + S+
Sbjct: 509 -----HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK 563

Query: 127 CHRLVQGALQ--DAGIYD 142
              L++ AL   D  I++
Sbjct: 564 YTDLLRIALMAEDEAIFE 581

>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis} Length = 76

 Score = 37.0 bits (86), Expect = 2e-04
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 14/52 (26%)

Query: 98  SHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQI 149
           +H+ I V+SSQF+ K  +            HR++   L    I    HAIQI
Sbjct: 34  NHYSIKVISSQFQGKSKLE----------QHRMIYKVLDGLNI----HAIQI 71

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	170
2dhm_A	107	Protein BOLA; stationary-phase, stress-induced, mo	99.97
1v60_A	123	BOLA1, riken cDNA 1810037G04; stationary phase mor	99.97
3o2e_A	105	BOLA-like protein; ssgcid, iodide, SAD, seattle st	99.94
1v9j_A	113	BOLA-like protein riken cDNA 1110025L05; stationar	99.93
2kdn_A	108	Putative uncharacterized protein PFE0790C; solutio	99.93
3tr3_A	82	BOLA; cellular processes, stress-induced, unknown	99.91
1xs3_A	80	Hypothetical protein XC975; BOLA-like, structural	99.9
1ny8_A	97	Protein YRBA; structure, autoassign, autostructure	99.9
2kz0_A	76	BOLA family protein; BOLA protein family, human mo	99.89
2kdn_A	108	Putative uncharacterized protein PFE0790C; solutio	99.31
3tr3_A	82	BOLA; cellular processes, stress-induced, unknown	99.04
1ny8_A	97	Protein YRBA; structure, autoassign, autostructure	98.88
1v9j_A	113	BOLA-like protein riken cDNA 1110025L05; stationar	97.21
2kz0_A	76	BOLA family protein; BOLA protein family, human mo	97.16
3o2e_A	105	BOLA-like protein; ssgcid, iodide, SAD, seattle st	96.9
1xs3_A	80	Hypothetical protein XC975; BOLA-like, structural	96.63
2dhm_A	107	Protein BOLA; stationary-phase, stress-induced, mo	96.52
1v60_A	123	BOLA1, riken cDNA 1810037G04; stationary phase mor	96.26

>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural GEN NPPSFA; NMR {Escherichia coli str}

Probab=99.97  E-value=7e-32  Score=202.34  Aligned_cols=98  Identities=26%  Similarity=0.355  Sum_probs=86.9

Q ss_pred             CCCchHHHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeeccccCC
Q psy4159           7 VTKNKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESFSHT   86 (170)
Q Consensus         7 ~~~~~~~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS~~Ha   86 (170)
                      +..|++.++|+++|+++|+|.+|+|+|+|++|+||.|                                           
T Consensus         5 ~~~m~~~~~I~~~L~~~l~p~~l~V~d~S~~H~~~~G-------------------------------------------   41 (107)
T 2dhm_A            5 SSGMMIRERIEEKLRAAFQPVFLEVVDESYRHNVPAG-------------------------------------------   41 (107)
T ss_dssp             SCCCCHHHHHHHHHHHHTCCSCCEEEECCCCCSSCCC-------------------------------------------
T ss_pred             cCCCCHHHHHHHHHHhcCCCcEEEEEECcccccCCCC-------------------------------------------
Confidence            3446789999999999999999999999999988753                                           


Q ss_pred             CCCCCCCCCCCCeEEEEEEcCCCCCCCchhhhhhhhhchhHHHHHHHHHHhhcCCCCccEEEeeecCcHHHHHhcc-CCC
Q psy4159          87 GISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQIVMSVSLPILLRLC-LTL  165 (170)
Q Consensus        87 gHa~~~~~~~~~hf~i~ivs~~F~g~~~i~~~~~~~~~~~rhr~V~~~L~~~~~~~~iHAl~i~~~~~~e~~~~~~-~~~  165 (170)
                               +|+||+|+|||++|+||++|          +|||+||++|+++|..+ ||||+|+|+||+||..+.. ...
T Consensus        42 ---------~gsHf~v~IVS~~F~G~s~v----------~RHrlVy~~L~~ei~~~-IHALsi~t~TP~Ew~~~~~~~~~  101 (107)
T 2dhm_A           42 ---------SESHFKVVLVSDRFTGERFL----------NRHRMIYSTLAEELSTT-VHALALHTYTIKEWEGLQDTVFA  101 (107)
T ss_dssp             ---------SCCCEEEEEECGGGSSCCSS----------HHHHHHHHHTHHHHHTT-CCCCEEEEECHHHHHTSSCCCCC
T ss_pred             ---------CCceEEEEEEchhhCCCCHH----------HHHHHHHHHHHHHHcCC-cceEEEEecCHHHHHhccCCCCC
Confidence                     38899999999999999999          99999999999999976 9999999999999988533 334


Q ss_pred             CC
Q psy4159         166 DP  167 (170)
Q Consensus       166 ~~  167 (170)
                      +|
T Consensus       102 sp  103 (107)
T 2dhm_A          102 SP  103 (107)
T ss_dssp             CC
T ss_pred             CC
Confidence            44

>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.97  E-value=2.5e-31  Score=203.67  Aligned_cols=97  Identities=29%  Similarity=0.363  Sum_probs=87.2

Q ss_pred             CCchHHHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeeccccCCC
Q psy4159           8 TKNKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESFSHTG   87 (170)
Q Consensus         8 ~~~~~~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS~~Hag   87 (170)
                      ..++++++|+++|+++|+|.+|+|+|+|++|+||.|                                            
T Consensus        23 ~~~~~~~~I~~~L~~~l~p~~l~V~DeS~~H~~~~G--------------------------------------------   58 (123)
T 1v60_A           23 AAGPVEAAIRAKLEQALSPEVLELRNESGGHAVPAG--------------------------------------------   58 (123)
T ss_dssp             SSCHHHHHHHHHHHHHTCCSEEEEEECCCSSSCCTT--------------------------------------------
T ss_pred             CCCcHHHHHHHHHHhhCCCeEEEEEECcccccCCCC--------------------------------------------
Confidence            357899999999999999999999999999998753                                            


Q ss_pred             CCCCCCCCCCCeEEEEEEcCCCCCCCchhhhhhhhhchhHHHHHHHHHHhhcCCCCccEEEeeecCcHHHHHhccCCCCC
Q psy4159          88 ISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQIVMSVSLPILLRLCLTLDP  167 (170)
Q Consensus        88 Ha~~~~~~~~~hf~i~ivs~~F~g~~~i~~~~~~~~~~~rhr~V~~~L~~~~~~~~iHAl~i~~~~~~e~~~~~~~~~~~  167 (170)
                              +|+||+|+|||++|+||++|          +|||+||++|+++|..+ ||||+|+++||+||..+.-...+|
T Consensus        59 --------~gsHf~v~IVS~~F~Gks~v----------~RHRlVy~aL~~ei~~~-IHALsi~t~TP~Ew~~~~~~~~Sp  119 (123)
T 1v60_A           59 --------SETHFRVAVVSSRFEGMSPL----------QRHRLVHEALSEELAGP-VHALAIQAKTPAQWRENPQLDISP  119 (123)
T ss_dssp             --------CCSEEEEEEECGGGTTCCHH----------HHHHHHHHHTHHHHTTT-CSEEEEEEECTTTTTTCCCCCSSC
T ss_pred             --------CCCeEEEEEEehhhCCCCHH----------HHHHHHHHHHHHHHcCC-cceeEeEecCHHHHHhccCCCCCC
Confidence                    38899999999999999999          99999999999999976 999999999999998865444444

>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis}

Probab=99.94  E-value=9.3e-28  Score=179.44  Aligned_cols=84  Identities=23%  Similarity=0.236  Sum_probs=76.3

Q ss_pred             CchHHHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeeccccCCCC
Q psy4159           9 KNKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESFSHTGI   88 (170)
Q Consensus         9 ~~~~~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS~~HagH   88 (170)
                      .|+++++|+++|+++|+|.+|+|+|+|+                                                    
T Consensus        21 ~M~~~~~I~~kL~~~l~p~~l~V~D~S~----------------------------------------------------   48 (105)
T 3o2e_A           21 SMVSKSIVEERLRSMLSPQFLKVTDNSG----------------------------------------------------   48 (105)
T ss_dssp             CCCCHHHHHHHHHHHHCCSEEEEEECCB----------------------------------------------------
T ss_pred             cCcHHHHHHHHHHhhCCCCEEEEEECCC----------------------------------------------------
Confidence            4678999999999999999999999983                                                    


Q ss_pred             CCCCCCCCCCeEEEEEEcCCCCCCCchhhhhhhhhchhHHHHHHHHHHhhcCCCCccEEEeeecCcHHHHHhcc
Q psy4159          89 SPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQIVMSVSLPILLRLC  162 (170)
Q Consensus        89 a~~~~~~~~~hf~i~ivs~~F~g~~~i~~~~~~~~~~~rhr~V~~~L~~~~~~~~iHAl~i~~~~~~e~~~~~~  162 (170)
                            |||+||+|+|||+.|+||++|          +|||+||++|+++|. + ||||+|+++||+||..+++
T Consensus        49 ------g~gsHf~v~IVS~~F~Gks~v----------~RHRlVy~aL~~ei~-~-IHALsi~t~TP~Ew~~~~~  104 (105)
T 3o2e_A           49 ------GCGAAFNAYIVSQQFEGKGLL----------DRQRLVNSAIAAEMP-Q-IHAFTMKCLTPGEWEAKNR  104 (105)
T ss_dssp             ------TTBEEEEEEEECGGGTTCCHH----------HHHHHHHHHTTTTGG-G-EEEEEEEEECHHHHHHTTC
T ss_pred             ------CCCcEEEEEEEchHhCCCCHH----------HHHHHHHHHHHHHHh-c-CceeEEEeCCHHHHHHhhC
Confidence                  138899999999999999999          999999999999998 4 9999999999999988753

>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} SCOP: d.52.6.1

Probab=99.93  E-value=4.2e-27  Score=177.93  Aligned_cols=81  Identities=25%  Similarity=0.389  Sum_probs=73.7

Q ss_pred             hHHHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeeccccCCCCCC
Q psy4159          11 KITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESFSHTGISP   90 (170)
Q Consensus        11 ~~~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS~~HagHa~   90 (170)
                      ...++|+++|+++|+|.+|+|+|+|+   +                                                  
T Consensus        30 m~~~~I~~~L~~~l~p~~l~V~DeS~---~--------------------------------------------------   56 (113)
T 1v9j_A           30 LSADYLREKLRQDLEAEHVEVEDTTL---N--------------------------------------------------   56 (113)
T ss_dssp             SCHHHHHHHHHHHHTCSEEEEEECCS---S--------------------------------------------------
T ss_pred             CcHHHHHHHHHhhCCCcEEEEEeccC---C--------------------------------------------------
Confidence            36799999999999999999999983   1                                                  


Q ss_pred             CCCCCCCCeEEEEEEcCCCCCCCchhhhhhhhhchhHHHHHHHHHHhhcCCCCccEEEeeecCcHHHHHh
Q psy4159          91 SEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQIVMSVSLPILLR  160 (170)
Q Consensus        91 ~~~~~~~~hf~i~ivs~~F~g~~~i~~~~~~~~~~~rhr~V~~~L~~~~~~~~iHAl~i~~~~~~e~~~~  160 (170)
                          |||+||+|+|||++|+||++|          +|||+||++|+++|..  ||||+|+|+||+||..+
T Consensus        57 ----G~gsHF~v~IVS~~F~Gks~V----------~RHRlVy~aL~eei~~--IHALsi~t~TP~Ew~~~  110 (113)
T 1v9j_A           57 ----RCATSFRVLVVSAKFEGKPLL----------QRHRLVNECLAEELPH--IHAFEQKTLTPEQWTRQ  110 (113)
T ss_dssp             ----SSCCCEEEEEECSHHHHSCHH----------HHHHHHHHHTTTTGGG--CSSEEEEEECHHHHHHS
T ss_pred             ----CCCceEEEEEEchhhCCCCHH----------HHHHHHHHHHHHHHhc--CceEEEEecChHHHHHh
Confidence                138899999999999999999          9999999999999995  99999999999999875

>2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum}

Probab=99.93  E-value=3e-26  Score=172.02  Aligned_cols=82  Identities=22%  Similarity=0.366  Sum_probs=76.5

Q ss_pred             EeChhhhccccccccCCceeeeeeccccCCCCCCCCCCCCCCeEEEEEEcCCCCCCCchhhhhhhhhchhHHHHHHHHHH
Q psy4159          57 VVSSQFENKPFIAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQ  136 (170)
Q Consensus        57 IVS~eFIgkkLiarhr~~~leV~DeS~~HagHa~~~~~~~~~hf~i~ivs~~F~g~~~i~~~~~~~~~~~rhr~V~~~L~  136 (170)
                      +|..+.|+.+|.+.|+|.+++|.|+|+           |||+||+|+|||++|+||++|          +|||+||++|+
T Consensus        23 Mm~~~~I~~~L~~~l~p~~l~V~DeS~-----------G~gsHF~v~IVS~~F~Gks~v----------~RHRlVy~aL~   81 (108)
T 2kdn_A           23 MCIQKVIEDKLSSALKPTFLELVDKSC-----------GCGTSFDAVIVSNNFEDKKLL----------DRHRLVNTILK   81 (108)
T ss_dssp             CSHHHHHHHHHHHHHCCSEEEEEECCC-----------SSSCCEEEEEECGGGTTCCHH----------HHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHhhCCCcEEEEEeCCC-----------CCCceEEEEEEehhhCCCCHH----------HHHHHHHHHHH
Confidence            378999999999999999999999994           248999999999999999999          99999999999


Q ss_pred             hhcCCCCccEEEeeecCcHHHHHhc
Q psy4159         137 DAGIYDIVHAIQIVMSVSLPILLRL  161 (170)
Q Consensus       137 ~~~~~~~iHAl~i~~~~~~e~~~~~  161 (170)
                      ++|..  ||||+|+|+||+||..+.
T Consensus        82 ~e~~~--IHALsi~t~TP~Ew~~~~  104 (108)
T 2kdn_A           82 EELQN--IHAFSMKCHTPLEYDKLK  104 (108)
T ss_dssp             HHGGG--CSCEEEEEECHHHHHHHH
T ss_pred             HHHhc--CceEEEEecChHHHHHhh
Confidence            99985  999999999999998753

>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii}

Probab=99.91  E-value=7.2e-25  Score=157.23  Aligned_cols=78  Identities=23%  Similarity=0.232  Sum_probs=72.1

Q ss_pred             EeChhhhccccccccCCceeeeeeccccCCCCCCCCCCCCCCeEEEEEEcCCCCCCCchhhhhhhhhchhHHHHHHHHHH
Q psy4159          57 VVSSQFENKPFIAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQ  136 (170)
Q Consensus        57 IVS~eFIgkkLiarhr~~~leV~DeS~~HagHa~~~~~~~~~hf~i~ivs~~F~g~~~i~~~~~~~~~~~rhr~V~~~L~  136 (170)
                      +|..+.|+.+|.+.|+|.+++|.+.              +|+||+|+|||+.|+||++|          +|||+||++|+
T Consensus         4 Mm~~~~I~~~L~~~l~~~~l~V~~g--------------~gshf~v~IVS~~F~G~~~v----------~Rhr~V~~~L~   59 (82)
T 3tr3_A            4 MVTTHDIKQWIETGLSESRVISAEG--------------DGHHFEAVVLCPTFEGQTAL----------TRHRLVYNALG   59 (82)
T ss_dssp             CCCHHHHHHHHHHHSTTCEEEEEEE--------------CSSEEEEEEECGGGTTCCHH----------HHHHHHHHHTG
T ss_pred             cchHHHHHHHHHhhCCCcEEEEEcC--------------CCCeEEEEEEchhhCCCCHH----------HHHHHHHHHHH
Confidence            4789999999999999999999831              48999999999999999999          99999999999


Q ss_pred             hhcCCCCccEEEeeecCcHHHHH
Q psy4159         137 DAGIYDIVHAIQIVMSVSLPILL  159 (170)
Q Consensus       137 ~~~~~~~iHAl~i~~~~~~e~~~  159 (170)
                      +++.++ ||||+|+++||+||..
T Consensus        60 ~~~~~~-iHAL~i~t~Tp~Ew~~   81 (82)
T 3tr3_A           60 SHMQSD-IHALSLKTYTPDEYER   81 (82)
T ss_dssp             GGGTTT-CSEEEEEEECHHHHHC
T ss_pred             HHHcCC-cceEEEEeCCHHHHhc
Confidence            999755 9999999999999974

>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic}

Probab=99.90  E-value=1.6e-24  Score=154.73  Aligned_cols=50  Identities=28%  Similarity=0.310  Sum_probs=48.2

Q ss_pred             CCeEEEEEEcCCCCCCCchhhhhhhhhchhHHHHHHHHHHhhcCCCCccEEEeeecCcHHH
Q psy4159          97 ASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQIVMSVSLPI  157 (170)
Q Consensus        97 ~~hf~i~ivs~~F~g~~~i~~~~~~~~~~~rhr~V~~~L~~~~~~~~iHAl~i~~~~~~e~  157 (170)
                      |+||+|+|||++|+||++|          +|||+||++|+++|.++ ||||+|+++||+||
T Consensus        31 gsHf~v~IVS~~F~G~~~v----------~RHrlVy~~L~~e~~~~-iHALsi~t~Tp~E~   80 (80)
T 1xs3_A           31 GVHFEATVVSPAFVGKAPL----------ARHRMVYATLGELMGGA-IHALQLKTLTPDEA   80 (80)
T ss_dssp             TSCCEEEEECGGGCSSCCH----------HHHHHHHHHTTSTTTTC-CSCCEEEEECGGGC
T ss_pred             CCEEEEEEEchhhCCCcHH----------HHHHHHHHHHHHHHcCC-cceEEEEecCCCCC
Confidence            7899999999999999999          99999999999999965 99999999999997

>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1

Probab=99.90  E-value=9.3e-25  Score=161.13  Aligned_cols=80  Identities=16%  Similarity=0.202  Sum_probs=73.4

Q ss_pred             EeChhhhccccccccCCceeeeeeccccCCCCCCCCCCCCCCeEEEEEEcCCCCCCCchhhhhhhhhchhHHHHHHHHHH
Q psy4159          57 VVSSQFENKPFIAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQ  136 (170)
Q Consensus        57 IVS~eFIgkkLiarhr~~~leV~DeS~~HagHa~~~~~~~~~hf~i~ivs~~F~g~~~i~~~~~~~~~~~rhr~V~~~L~  136 (170)
                      +|+.+.|+.+|.++++|.+++|.+               ||+||+|+|||++|+||++|          +|||+||++|+
T Consensus         5 ~m~~~~I~~~L~~~l~p~~l~V~G---------------~gsHf~v~IVS~~F~Gks~v----------~RHRlVy~aL~   59 (97)
T 1ny8_A            5 PMENNEIQSVLMNALSLQEVHVSG---------------DGSHFQVIAVGELFDGMSRV----------KKQQTVYGPLM   59 (97)
T ss_dssp             CCCCHHHHHHHHHHHCCSEEEEEE---------------SSSEEEEEEESSTTSSSCHH----------HHHHHHHTTTH
T ss_pred             ccCHHHHHHHHHhhCCCcEEEEEc---------------CCceEEEEEEChhhCCCCHH----------HHHHHHHHHHH
Confidence            467899999999999999999981               38999999999999999999          99999999999


Q ss_pred             hhcCCCCccEEEeeecCcHHHHHhc
Q psy4159         137 DAGIYDIVHAIQIVMSVSLPILLRL  161 (170)
Q Consensus       137 ~~~~~~~iHAl~i~~~~~~e~~~~~  161 (170)
                      ++|.+|.||||+|+|+||+||..+.
T Consensus        60 ~e~~~~~IHALsi~t~TP~Ew~~~~   84 (97)
T 1ny8_A           60 EYIADNRIHAVSIKAYTPAEWARDR   84 (97)
T ss_dssp             HHHHHHTTSEEEEEECCHHHHHHHH
T ss_pred             HHHccCCcceEEeEecChHHHHhhh
Confidence            9998544999999999999998864

>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis}

Probab=99.89  E-value=3.2e-24  Score=151.91  Aligned_cols=70  Identities=29%  Similarity=0.453  Sum_probs=62.4

Q ss_pred             HHHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeeccccCCCCCCC
Q psy4159          12 ITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESFSHTGISPS   91 (170)
Q Consensus        12 ~~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS~~HagHa~~   91 (170)
                      ..++|+++|+++|+|.+|+|+|+|    |                                                   
T Consensus         7 ~~~~I~~~L~~~l~~~~l~V~d~S----G---------------------------------------------------   31 (76)
T 2kz0_A            7 TQSQLELLIRNAFPEAEITVTSLV----G---------------------------------------------------   31 (76)
T ss_dssp             TTHHHHHHHHHHCTTEEEEEECCS----S---------------------------------------------------
T ss_pred             cHHHHHHHHHhhCCCcEEEEEECC----C---------------------------------------------------
Confidence            357888888888888888888887    1                                                   


Q ss_pred             CCCCCCCeEEEEEEcCCCCCCCchhhhhhhhhchhHHHHHHHHHHhhcCCCCccEEEeeecCc
Q psy4159          92 EEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQIVMSVS  154 (170)
Q Consensus        92 ~~~~~~~hf~i~ivs~~F~g~~~i~~~~~~~~~~~rhr~V~~~L~~~~~~~~iHAl~i~~~~~  154 (170)
                          ||+||+|+|||++|+||++|          +|||+||++|+++   + ||||+|+|+||
T Consensus        32 ----~g~Hf~v~IVS~~F~G~s~v----------~rHr~Vy~~L~~e---~-iHALsi~t~tp   76 (76)
T 2kz0_A           32 ----DNNHYSIKVISSQFQGKSKL----------EQHRMIYKVLDGL---N-IHAIQIQTGCK   76 (76)
T ss_dssp             ----TTSCCEEEEEEGGGTTCCHH----------HHHHHHHHHTTTS---C-CCSSSEEECCC
T ss_pred             ----CccEEEEEEEchHhCCCCHH----------HHHHHHHHHhccC---C-ceEEEEEEeCC
Confidence                27899999999999999999          9999999999999   4 99999999997

>2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum}

Probab=99.31  E-value=4.7e-13  Score=100.23  Aligned_cols=63  Identities=24%  Similarity=0.377  Sum_probs=57.0

Q ss_pred             chHHHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeeccc
Q psy4159          10 NKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESF   83 (170)
Q Consensus        10 ~~~~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS~   83 (170)
                      |...++|+++|+++|+|.+|+|+|+|+           |+++||+|+|||+.|.|+++++|||.+|-.+.++-.
T Consensus        23 Mm~~~~I~~~L~~~l~p~~l~V~DeS~-----------G~gsHF~v~IVS~~F~Gks~v~RHRlVy~aL~~e~~   85 (108)
T 2kdn_A           23 MCIQKVIEDKLSSALKPTFLELVDKSC-----------GCGTSFDAVIVSNNFEDKKLLDRHRLVNTILKEELQ   85 (108)
T ss_dssp             CSHHHHHHHHHHHHHCCSEEEEEECCC-----------SSSCCEEEEEECGGGTTCCHHHHHHHHHHHHHHHGG
T ss_pred             CCcHHHHHHHHHhhCCCcEEEEEeCCC-----------CCCceEEEEEEehhhCCCCHHHHHHHHHHHHHHHHh
Confidence            467899999999999999999999993           357999999999999999999999999988887743

>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii}

Probab=99.04  E-value=4.1e-11  Score=85.59  Aligned_cols=59  Identities=17%  Similarity=0.168  Sum_probs=52.6

Q ss_pred             chHHHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeecc
Q psy4159          10 NKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINES   82 (170)
Q Consensus        10 ~~~~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS   82 (170)
                      |...++|+++|+++|+|.+|+|.+              |+++||+|+|||+.|.|+++++|||.+|-.+.++-
T Consensus         4 Mm~~~~I~~~L~~~l~~~~l~V~~--------------g~gshf~v~IVS~~F~G~~~v~Rhr~V~~~L~~~~   62 (82)
T 3tr3_A            4 MVTTHDIKQWIETGLSESRVISAE--------------GDGHHFEAVVLCPTFEGQTALTRHRLVYNALGSHM   62 (82)
T ss_dssp             CCCHHHHHHHHHHHSTTCEEEEEE--------------ECSSEEEEEEECGGGTTCCHHHHHHHHHHHTGGGG
T ss_pred             cchHHHHHHHHHhhCCCcEEEEEc--------------CCCCeEEEEEEchhhCCCCHHHHHHHHHHHHHHHH
Confidence            345899999999999999999993              25699999999999999999999999988888775

>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1

Probab=98.88  E-value=1.5e-10  Score=85.12  Aligned_cols=56  Identities=20%  Similarity=0.297  Sum_probs=50.5

Q ss_pred             HHHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeecc
Q psy4159          12 ITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINES   82 (170)
Q Consensus        12 ~~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS   82 (170)
                      ..++|+++|+++|+|.+|+|.       |        +|+||+|+|||+.|.|+++++|||.+|-.+.++-
T Consensus         7 ~~~~I~~~L~~~l~p~~l~V~-------G--------~gsHf~v~IVS~~F~Gks~v~RHRlVy~aL~~e~   62 (97)
T 1ny8_A            7 ENNEIQSVLMNALSLQEVHVS-------G--------DGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYI   62 (97)
T ss_dssp             CCHHHHHHHHHHHCCSEEEEE-------E--------SSSEEEEEEESSTTSSSCHHHHHHHHHTTTHHHH
T ss_pred             CHHHHHHHHHhhCCCcEEEEE-------c--------CCceEEEEEEChhhCCCCHHHHHHHHHHHHHHHH
Confidence            358999999999999999998       1        4699999999999999999999999988887774

>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} SCOP: d.52.6.1

Probab=97.21  E-value=3.5e-05  Score=57.87  Aligned_cols=62  Identities=21%  Similarity=0.315  Sum_probs=47.7

Q ss_pred             CCCchHHHHHHHHHhhcCCCceEEEE-ecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeeccc
Q psy4159           7 VTKNKITLKIENILTKKLNPSHIDVI-NESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESF   83 (170)
Q Consensus         7 ~~~~~~~~~I~~kL~~~l~p~~leV~-deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS~   83 (170)
                      |..-.+.++|++.|... .-...+.- +...              +||+|+|||+.|.|+++++|||.+|-.+.++-.
T Consensus        30 m~~~~I~~~L~~~l~p~-~l~V~DeS~~G~g--------------sHF~v~IVS~~F~Gks~V~RHRlVy~aL~eei~   92 (113)
T 1v9j_A           30 LSADYLREKLRQDLEAE-HVEVEDTTLNRCA--------------TSFRVLVVSAKFEGKPLLQRHRLVNECLAEELP   92 (113)
T ss_dssp             SCHHHHHHHHHHHHTCS-EEEEEECCSSSSC--------------CCEEEEEECSHHHHSCHHHHHHHHHHHTTTTGG
T ss_pred             CcHHHHHHHHHhhCCCc-EEEEEeccCCCCC--------------ceEEEEEEchhhCCCCHHHHHHHHHHHHHHHHh
Confidence            45678999999999743 33344443 2222              799999999999999999999999988887743

>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis}

Probab=97.16  E-value=3.4e-05  Score=54.00  Aligned_cols=61  Identities=23%  Similarity=0.282  Sum_probs=44.5

Q ss_pred             CCCchHHHHHHHHHhhc-CCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeeccccC
Q psy4159           7 VTKNKITLKIENILTKK-LNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESFSH   85 (170)
Q Consensus         7 ~~~~~~~~~I~~kL~~~-l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS~~H   85 (170)
                      |..-.+.++|++.|... +...... =++|                ||+|+|||+.|.|+++++|||.+|-.+.|+ .-|
T Consensus         6 m~~~~I~~~L~~~l~~~~l~V~d~S-G~g~----------------Hf~v~IVS~~F~G~s~v~rHr~Vy~~L~~e-~iH   67 (76)
T 2kz0_A            6 VTQSQLELLIRNAFPEAEITVTSLV-GDNN----------------HYSIKVISSQFQGKSKLEQHRMIYKVLDGL-NIH   67 (76)
T ss_dssp             CTTHHHHHHHHHHCTTEEEEEECCS-STTS----------------CCEEEEEEGGGTTCCHHHHHHHHHHHTTTS-CCC
T ss_pred             ccHHHHHHHHHhhCCCcEEEEEECC-CCcc----------------EEEEEEEchHhCCCCHHHHHHHHHHHhccC-Cce
Confidence            44456788888888632 2221111 2454                799999999999999999999999888888 444

>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis}

Probab=96.90  E-value=9.7e-05  Score=54.77  Aligned_cols=59  Identities=19%  Similarity=0.236  Sum_probs=45.2

Q ss_pred             CchHHHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeecc
Q psy4159           9 KNKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINES   82 (170)
Q Consensus         9 ~~~~~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS   82 (170)
                      .-.+.++|++.|... .-...+.-....              +||+|+|||+.|.|+++++|||.+|-.+.++-
T Consensus        25 ~~~I~~kL~~~l~p~-~l~V~D~S~g~g--------------sHf~v~IVS~~F~Gks~v~RHRlVy~aL~~ei   83 (105)
T 3o2e_A           25 KSIVEERLRSMLSPQ-FLKVTDNSGGCG--------------AAFNAYIVSQQFEGKGLLDRQRLVNSAIAAEM   83 (105)
T ss_dssp             HHHHHHHHHHHHCCS-EEEEEECCBTTB--------------EEEEEEEECGGGTTCCHHHHHHHHHHHTTTTG
T ss_pred             HHHHHHHHHhhCCCC-EEEEEECCCCCC--------------cEEEEEEEchHhCCCCHHHHHHHHHHHHHHHH
Confidence            456888999988533 333444443344              79999999999999999999999888777764

>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic}

Probab=96.63  E-value=0.00022  Score=50.27  Aligned_cols=59  Identities=24%  Similarity=0.214  Sum_probs=52.8

Q ss_pred             hHHHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeeccc
Q psy4159          11 KITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESF   83 (170)
Q Consensus        11 ~~~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS~   83 (170)
                      -..++|+++|+++|+|.+|+|.       |       ++|+||+|+|||+.|.|+++++|||.+|-.+.|+-.
T Consensus         6 m~~~~I~~~L~~~l~~~~l~V~-------G-------~~gsHf~v~IVS~~F~G~~~v~RHrlVy~~L~~e~~   64 (80)
T 1xs3_A            6 LDAETIRKLIESGLPEARVDVQ-------G-------EDGVHFEATVVSPAFVGKAPLARHRMVYATLGELMG   64 (80)
T ss_dssp             CHHHHHHHHHHHHSSSCEEEEE-------S-------CTTSCCEEEEECGGGCSSCCHHHHHHHHHHTTSTTT
T ss_pred             CCHHHHHHHHHhhCCCcEEEEE-------c-------CCCCEEEEEEEchhhCCCcHHHHHHHHHHHHHHHHc
Confidence            4689999999999999999998       2       256999999999999999999999999988888753

>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural GEN NPPSFA; NMR {Escherichia coli str}

Probab=96.52  E-value=0.00022  Score=52.84  Aligned_cols=65  Identities=20%  Similarity=0.281  Sum_probs=48.2

Q ss_pred             CchHHHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeecc
Q psy4159           9 KNKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINES   82 (170)
Q Consensus         9 ~~~~~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS   82 (170)
                      .-.+.++|++.|... .-...+.-.--..|.|-..        ||+|+|||+.|.|+++++|||.+|-.+.|+-
T Consensus        11 ~~~I~~~L~~~l~p~-~l~V~d~S~~H~~~~G~gs--------Hf~v~IVS~~F~G~s~v~RHrlVy~~L~~ei   75 (107)
T 2dhm_A           11 RERIEEKLRAAFQPV-FLEVVDESYRHNVPAGSES--------HFKVVLVSDRFTGERFLNRHRMIYSTLAEEL   75 (107)
T ss_dssp             HHHHHHHHHHHTCCS-CCEEEECCCCCSSCCCSCC--------CEEEEEECGGGSSCCSSHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHhcCCCc-EEEEEECcccccCCCCCCc--------eEEEEEEchhhCCCCHHHHHHHHHHHHHHHH
Confidence            467899999999643 3444443322233555545        8999999999999999999999998888774

>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=96.26  E-value=0.00038  Score=52.83  Aligned_cols=66  Identities=23%  Similarity=0.269  Sum_probs=47.7

Q ss_pred             CCchHHHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeecc
Q psy4159           8 TKNKITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINES   82 (170)
Q Consensus         8 ~~~~~~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS   82 (170)
                      ..-.+.++|++.|... .-...+.-.--..|.|-..        ||+|+|||+.|.++++++|||.+|-.+.++-
T Consensus        27 ~~~~I~~~L~~~l~p~-~l~V~DeS~~H~~~~G~gs--------Hf~v~IVS~~F~Gks~v~RHRlVy~aL~~ei   92 (123)
T 1v60_A           27 VEAAIRAKLEQALSPE-VLELRNESGGHAVPAGSET--------HFRVAVVSSRFEGMSPLQRHRLVHEALSEEL   92 (123)
T ss_dssp             HHHHHHHHHHHHTCCS-EEEEEECCCSSSCCTTCCS--------EEEEEEECGGGTTCCHHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHHhhCCCe-EEEEEECcccccCCCCCCC--------eEEEEEEehhhCCCCHHHHHHHHHHHHHHHH
Confidence            3456888999888643 3333333322223455445        8999999999999999999999998888775

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	170
d1v9ja_	113	d.52.6.1 (A:) BolA-like protein {Mouse (Mus muscul	3e-08
d1v9ja_	113	d.52.6.1 (A:) BolA-like protein {Mouse (Mus muscul	5e-08
d1ny8a_	97	d.52.6.1 (A:) Hypothetical protein YrbA {Escherich	2e-06
d1ny8a_	97	d.52.6.1 (A:) Hypothetical protein YrbA {Escherich	4e-05

>d1v9ja_ d.52.6.1 (A:) BolA-like protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 113

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: BolA-like protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.6 bits (113), Expect = 3e-08
 Identities = 12/55 (21%), Positives = 27/55 (49%), Gaps = 10/55 (18%)

Query: 16 IENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAK 70
          +   L + L   H++V + + +             + F+++VVS++FE KP + +
Sbjct: 35 LREKLRQDLEAEHVEVEDTTLNRCA----------TSFRVLVVSAKFEGKPLLQR 79

>d1v9ja_ d.52.6.1 (A:) BolA-like protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 113

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: BolA-like protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.8 bits (111), Expect = 5e-08
 Identities = 18/81 (22%), Positives = 33/81 (40%), Gaps = 22/81 (27%)

Query: 69  AKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCH 128
             L   H++V + + +             + F+++VVS++FE KP +            H
Sbjct: 41  QDLEAEHVEVEDTTLNRCA----------TSFRVLVVSAKFEGKPLLQ----------RH 80

Query: 129 RLVQGALQDAGIYDIVHAIQI 149
           RLV   L +      +HA + 
Sbjct: 81  RLVNECLAE--ELPHIHAFEQ 99

>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli [TaxId: 562]} Length = 97

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: Hypothetical protein YrbA
species: Escherichia coli [TaxId: 562]

 Score = 42.1 bits (99), Expect = 2e-06
 Identities = 13/81 (16%), Positives = 26/81 (32%), Gaps = 25/81 (30%)

Query: 69  AKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCH 128
             L+   + V  +                SHF+++ V   F+    +             
Sbjct: 17  NALSLQEVHVSGDG---------------SHFQVIAVGELFDGMSRVK----------KQ 51

Query: 129 RLVQGALQDAGIYDIVHAIQI 149
           + V G L +    + +HA+ I
Sbjct: 52  QTVYGPLMEYIADNRIHAVSI 72

>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli [TaxId: 562]} Length = 97

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: Hypothetical protein YrbA
species: Escherichia coli [TaxId: 562]

 Score = 38.6 bits (90), Expect = 4e-05
 Identities = 10/56 (17%), Positives = 22/56 (39%), Gaps = 15/56 (26%)

Query: 15 KIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAK 70
          +I+++L   L+   + V  +                SHF+++ V   F+    + K
Sbjct: 10 EIQSVLMNALSLQEVHVSGDG---------------SHFQVIAVGELFDGMSRVKK 50

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	170
d1v9ja_	113	BolA-like protein {Mouse (Mus musculus) [TaxId: 10	99.92
d1ny8a_	97	Hypothetical protein YrbA {Escherichia coli [TaxId	99.88
d1ny8a_	97	Hypothetical protein YrbA {Escherichia coli [TaxId	98.51
d1v9ja_	113	BolA-like protein {Mouse (Mus musculus) [TaxId: 10	94.54

>d1v9ja_ d.52.6.1 (A:) BolA-like protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: BolA-like protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=4.1e-26  Score=170.70  Aligned_cols=82  Identities=24%  Similarity=0.383  Sum_probs=74.4

Q ss_pred             hHHHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeeccccCCCCCC
Q psy4159          11 KITLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINESFSHTGISP   90 (170)
Q Consensus        11 ~~~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS~~HagHa~   90 (170)
                      ..+++|+++|+++|+|.+|+|+|+|+.|+                                                   
T Consensus        30 ~~~e~I~~kL~~~~~~~~leV~D~S~~h~---------------------------------------------------   58 (113)
T d1v9ja_          30 LSADYLREKLRQDLEAEHVEVEDTTLNRC---------------------------------------------------   58 (113)
T ss_dssp             SCHHHHHHHHHHHHTCSEEEEEECCSSSS---------------------------------------------------
T ss_pred             ccHHHHHHHHHhhCCCcEEEEEecCCCCC---------------------------------------------------
Confidence            35788999999999999999999996442                                                   


Q ss_pred             CCCCCCCCeEEEEEEcCCCCCCCchhhhhhhhhchhHHHHHHHHHHhhcCCCCccEEEeeecCcHHHHHhc
Q psy4159          91 SEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQDAGIYDIVHAIQIVMSVSLPILLRL  161 (170)
Q Consensus        91 ~~~~~~~~hf~i~ivs~~F~g~~~i~~~~~~~~~~~rhr~V~~~L~~~~~~~~iHAl~i~~~~~~e~~~~~  161 (170)
                            |+||+|+|||+.|+|+++|          +|||+||++|+++|+.  ||||+|+++||+||..++
T Consensus        59 ------G~Hf~i~IvS~~F~g~s~v----------~rHr~Vy~~L~~ei~~--iHAlsi~t~Tp~Ew~~~~  111 (113)
T d1v9ja_          59 ------ATSFRVLVVSAKFEGKPLL----------QRHRLVNECLAEELPH--IHAFEQKTLTPEQWTRQR  111 (113)
T ss_dssp             ------CCCEEEEEECSHHHHSCHH----------HHHHHHHHHTTTTGGG--CSSEEEEEECHHHHHHSC
T ss_pred             ------CceEEEEEEeccccCCchh----------HHHHhHHHHHHHHHhc--ceeeEEEeCCHHHHHHhh
Confidence                  5799999999999999999          9999999999999964  999999999999999874

>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: Hypothetical protein YrbA
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=5.5e-24  Score=155.23  Aligned_cols=79  Identities=16%  Similarity=0.242  Sum_probs=73.2

Q ss_pred             EeChhhhccccccccCCceeeeeeccccCCCCCCCCCCCCCCeEEEEEEcCCCCCCCchhhhhhhhhchhHHHHHHHHHH
Q psy4159          57 VVSSQFENKPFIAKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAFIIILEVTSRCHRLVQGALQ  136 (170)
Q Consensus        57 IVS~eFIgkkLiarhr~~~leV~DeS~~HagHa~~~~~~~~~hf~i~ivs~~F~g~~~i~~~~~~~~~~~rhr~V~~~L~  136 (170)
                      .|..+.|...|.+.+++.+++|.++               |+||+|+|||+.|+|+++|          +|||+||++|+
T Consensus         5 ~M~~~eI~~~L~~~l~~~~v~V~g~---------------g~hf~i~IvS~~F~g~s~v----------~RHr~Vy~~L~   59 (97)
T d1ny8a_           5 PMENNEIQSVLMNALSLQEVHVSGD---------------GSHFQVIAVGELFDGMSRV----------KKQQTVYGPLM   59 (97)
T ss_dssp             CCCCHHHHHHHHHHHCCSEEEEEES---------------SSEEEEEEESSTTSSSCHH----------HHHHHHHTTTH
T ss_pred             cCCHHHHHHHHHhhCCCcEEEEeCC---------------CcEEEEEEEcHHhCCCCHH----------HHHHHHHHHHH
Confidence            3667889999999999999999765               8999999999999999999          99999999999


Q ss_pred             hhcCCCCccEEEeeecCcHHHHHh
Q psy4159         137 DAGIYDIVHAIQIVMSVSLPILLR  160 (170)
Q Consensus       137 ~~~~~~~iHAl~i~~~~~~e~~~~  160 (170)
                      ++|..|.||||+|+|+||+||...
T Consensus        60 ~~i~~g~IHAlsikt~Tp~Ew~~~   83 (97)
T d1ny8a_          60 EYIADNRIHAVSIKAYTPAEWARD   83 (97)
T ss_dssp             HHHHHHTTSEEEEEECCHHHHHHH
T ss_pred             HHHcCCCceeeEeEeCCHHHHHHh
Confidence            999977799999999999999766

>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: Hypothetical protein YrbA
species: Escherichia coli [TaxId: 562]

Probab=98.51  E-value=3.3e-09  Score=76.13  Aligned_cols=55  Identities=18%  Similarity=0.321  Sum_probs=49.3

Q ss_pred             HHHHHHHHhhcCCCceEEEEecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeecc
Q psy4159          13 TLKIENILTKKLNPSHIDVINESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINES   82 (170)
Q Consensus        13 ~~~I~~kL~~~l~p~~leV~deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS   82 (170)
                      .++|+++|+++|++++++|.++               ++||+|.|||+.|.|+++++|||.+|-.+.|+-
T Consensus         8 ~~eI~~~L~~~l~~~~v~V~g~---------------g~hf~i~IvS~~F~g~s~v~RHr~Vy~~L~~~i   62 (97)
T d1ny8a_           8 NNEIQSVLMNALSLQEVHVSGD---------------GSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYI   62 (97)
T ss_dssp             CHHHHHHHHHHHCCSEEEEEES---------------SSEEEEEEESSTTSSSCHHHHHHHHHTTTHHHH
T ss_pred             HHHHHHHHHhhCCCcEEEEeCC---------------CcEEEEEEEcHHhCCCCHHHHHHHHHHHHHHHH
Confidence            4789999999999999999653               489999999999999999999999988887764

>d1v9ja_ d.52.6.1 (A:) BolA-like protein {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: BolA-like
family: BolA-like
domain: BolA-like protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.54  E-value=0.0018  Score=46.62  Aligned_cols=59  Identities=22%  Similarity=0.334  Sum_probs=42.1

Q ss_pred             CchHHHHHHHHHhhcCCCceEEEE-ecCCCCCCCCCCCCCCccceEEEEEeChhhhccccccccCCceeeeeecc
Q psy4159           9 KNKITLKIENILTKKLNPSHIDVI-NESFSHTGISPSEEPELASHFKIVVVSSQFENKPFIAKLNPSHIDVINES   82 (170)
Q Consensus         9 ~~~~~~~I~~kL~~~l~p~~leV~-deS~~H~gH~g~~~~~~esHF~v~IVS~eFIgkkLiarhr~~~leV~DeS   82 (170)
                      .-.+.++|++.|... .-...+.- +-...|              |+|+|||+.|.++++++|||.+|-.+.|+-
T Consensus        32 ~e~I~~kL~~~~~~~-~leV~D~S~~h~G~H--------------f~i~IvS~~F~g~s~v~rHr~Vy~~L~~ei   91 (113)
T d1v9ja_          32 ADYLREKLRQDLEAE-HVEVEDTTLNRCATS--------------FRVLVVSAKFEGKPLLQRHRLVNECLAEEL   91 (113)
T ss_dssp             HHHHHHHHHHHHTCS-EEEEEECCSSSSCCC--------------EEEEEECSHHHHSCHHHHHHHHHHHTTTTG
T ss_pred             HHHHHHHHHhhCCCc-EEEEEecCCCCCCce--------------EEEEEEeccccCCchhHHHHhHHHHHHHHH
Confidence            345788888888654 23333332 112334              899999999999999999999888777764