Psyllid ID: psy4192

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------
Protein Sequence
MASFRPLARSFSTSQVSQQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNALTTAPLKLARSFSTSQISQQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLTGHPSNSS
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccEEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEEEEccccccccccccccccccHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccEEEEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHccccccccEEEEccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccHHHHHHHHHHHHHHHccccEEEEEEEEccHHcccEEEEcccHHHHHHHHHHHHHHHcHccccccEEEEccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccEEEEEEEHHHHHcccccccc
Coil and Loop (DISEMBL)
masfrplarsfstsQVSQQLVKapvqvfgtdgrYATALYSAATKLKQLDGVEKELISFQKSLKIEALKIVGQKKNFSAASINLLALLAEngkiknidgvINNFSIIMAAhrgdlpvevitarpleeadkSELQSTLKLFAKKGENillttkvdpsiigdpksnalttaplkLARSFSTSQISQQLVkapvqvfgtdgrYATALYSAATKLKQLDGVEKELISFQQALKTDVkfrdfvldptiqkSLKIEALKIVGQKKNFSAASINLLALLAEngkiknidgvINNFSIIMAAHRGDLPVEVITARFwltghpsnss
Flexible Loop (DISEMBL)
masfrplarsfstsqvsqqlvkapvqvfgtdGRYATALYSAATKLKQLDGVEKELISFQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKkgenillttkvdpsiigdpksnALTTAPLKLARSFSTSQISQQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARFwltghpsnss
Low Complexity Region (SEG)
MASFRPLARSFSTSQVSQQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQKSLKIEALKIVGQKKNFsaasinllallaENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNALTTAPLKLARSFSTSQISQQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFsaasinllallaENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLTGHPSNSS
Disordered region (IsUnstruct)
*******************LVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITAR************TLKLFAKKGENILLTTKVDPSIIG***********LKLAR*F**SQISQQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLT*******
Disordered Region (DISOPRED)
*********SFST************QVFGTDGRYATALYSAATKLKQLDGVEKELISFQKSLKIE********KNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNALTTAPLKLA********************GTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARF**********
Disordered Region (DISEMBL)
*******************LVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNALTTAPLKLARSFSTSQISQQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLTGHPSNSS
Disordered Region (DISPRO)
****RPLA*SFSTSQVSQQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNALTTAPLKLARSFSTSQISQQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLT*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASFRPLARSFSTSQVSQQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNALTTAPLKLARSFSTSQISQQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLTGHPSNSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	317	2.2.26 [Sep-21-2011]
Q24439	209	ATP synthase subunit O, m	yes	N/A	0.495	0.751	0.466	2e-36
Q06647	213	ATP synthase subunit O, m	yes	N/A	0.473	0.704	0.482	3e-35
Q5RD23	213	ATP synthase subunit O, m	yes	N/A	0.473	0.704	0.452	3e-34
P48047	213	ATP synthase subunit O, m	yes	N/A	0.473	0.704	0.447	1e-33
B1MT69	213	ATP synthase subunit O, m	N/A	N/A	0.473	0.704	0.452	3e-33
B0VXH3	213	ATP synthase subunit O, m	yes	N/A	0.473	0.704	0.452	3e-33
Q2EN81	213	ATP synthase subunit O, m	yes	N/A	0.473	0.704	0.447	5e-33
B2B9A1	213	ATP synthase subunit O, m	N/A	N/A	0.498	0.741	0.432	6e-33
Q9DB20	213	ATP synthase subunit O, m	yes	N/A	0.473	0.704	0.447	6e-33
P13621	213	ATP synthase subunit O, m	yes	N/A	0.473	0.704	0.435	2e-31

>sp|Q24439|ATPO_DROME ATP synthase subunit O, mitochondrial OS=Drosophila melanogaster GN=Oscp PE=2 SV=2

 Score =  152 bits (385), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 84/180 (46%), Positives = 116/180 (64%), Gaps = 23/180 (12%)

Query: 1   MASFRPLA---RSFSTSQVSQQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELIS 57
           MAS   LA   R+ S S  +Q  VK PVQVFG +GRYATALYSAA+KL QLD VEK+L +
Sbjct: 1   MASINKLALLSRTLS-SAAAQATVKPPVQVFGLEGRYATALYSAASKLSQLDQVEKDLTA 59

Query: 58  FQKSLKIE-------------------ALKIVGQKKNFSAASINLLALLAENGKIKNIDG 98
            Q +++ +                   ALK   +K  F+ A++NLL LLA+NG++K +D 
Sbjct: 60  LQATIRSDKKLREYVTSPIINKKVMATALKEASEKLRFAPATVNLLGLLADNGRLKKLDT 119

Query: 99  VINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIG 158
           VIN +  IMAAHRG++  EV+TA+PL+ +   +L+  LK F K  E++ +T++VDPSIIG
Sbjct: 120 VINAYKTIMAAHRGEVVCEVVTAKPLDASQSKQLEGALKSFLKGNESLKITSRVDPSIIG 179

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.
Drosophila melanogaster (taxid: 7227)

>sp|Q06647|ATPO_RAT ATP synthase subunit O, mitochondrial OS=Rattus norvegicus GN=Atp5o PE=1 SV=1

 Score =  149 bits (376), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 82/170 (48%), Positives = 111/170 (65%), Gaps = 20/170 (11%)

Query: 9   RSFSTSQVS--QQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELIS--------- 57
           RSFSTS V    +LV+ PVQV+G +GRYATALYSAA+K K+LD VEKEL+          
Sbjct: 14  RSFSTSVVRPFSKLVRPPVQVYGIEGRYATALYSAASKQKRLDQVEKELLRVGQLLKDPK 73

Query: 58  ---------FQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMA 108
                     ++S+K+++LK +  K+ FS  + NL+ LLAENG++ N  GVI+ FS IM+
Sbjct: 74  VSLAVLNPYIKRSIKVKSLKDITTKEKFSPLTANLMNLLAENGRLGNTQGVISAFSTIMS 133

Query: 109 AHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIG 158
            HRG++P  V TA PL+EA  SEL++ L  F  KG+ + L  K DPSI+G
Sbjct: 134 VHRGEVPCTVTTAFPLDEAVLSELKTVLNSFLSKGQILNLEVKTDPSIMG 183

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Rattus norvegicus (taxid: 10116)

>sp|Q5RD23|ATPO_PONAB ATP synthase subunit O, mitochondrial OS=Pongo abelii GN=ATP5O PE=2 SV=1

 Score =  145 bits (367), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 77/170 (45%), Positives = 110/170 (64%), Gaps = 20/170 (11%)

Query: 9   RSFSTSQVSQ--QLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISF-------- 58
           R FSTS V    +LV+ PVQV+G +GRYATALYSAA+K  +L+ VEKEL+          
Sbjct: 14  RCFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPK 73

Query: 59  ----------QKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMA 108
                     ++S+K+++L  +  K+ FS  + NL+ LLAENG++ N  GV++ FS +M+
Sbjct: 74  VAAPVLNPYVKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMS 133

Query: 109 AHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIG 158
           AHRG++P  V +A PLEEA  SEL++ LK F  +G+ + L  K DPSI+G
Sbjct: 134 AHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSILG 183

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Pongo abelii (taxid: 9601)

>sp|P48047|ATPO_HUMAN ATP synthase subunit O, mitochondrial OS=Homo sapiens GN=ATP5O PE=1 SV=1

 Score =  143 bits (361), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 109/170 (64%), Gaps = 20/170 (11%)

Query: 9   RSFSTSQVS--QQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISF-------- 58
           R FSTS V    +LV+ PVQV+G +GRYATALYSAA+K  +L+ VEKEL+          
Sbjct: 14  RCFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPK 73

Query: 59  ----------QKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMA 108
                     ++S+K+++L  +  K+ FS  + NL+ LLAENG++ N  GV++ FS +M+
Sbjct: 74  VAASVLNPYVKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMS 133

Query: 109 AHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIG 158
            HRG++P  V +A PLEEA  SEL++ LK F  +G+ + L  K DPSI+G
Sbjct: 134 VHRGEVPCTVTSASPLEEATLSELKTVLKSFLSQGQVLKLEAKTDPSILG 183

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Homo sapiens (taxid: 9606)

>sp|B1MT69|ATPO_CALMO ATP synthase subunit O, mitochondrial OS=Callicebus moloch GN=ATP5O PE=3 SV=1

 Score =  142 bits (359), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 77/170 (45%), Positives = 108/170 (63%), Gaps = 20/170 (11%)

Query: 9   RSFSTSQVSQ--QLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISF-------- 58
           R FSTS V    +LV+ PVQV+G +GRYATALYSAA+K K+L+ VEKEL+          
Sbjct: 14  RYFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQKKLEQVEKELLRVAQILKEPK 73

Query: 59  ----------QKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMA 108
                     + S+K+++L  +  K+ FS  + NL+ LLAENG++ N  GV++ FS +M+
Sbjct: 74  VAASVLNPYVKHSVKVKSLSDIIAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMS 133

Query: 109 AHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIG 158
            HRG++P  V TA PLEE   SEL++ LK F  +G+ + L  K DPSI+G
Sbjct: 134 VHRGEIPCTVTTASPLEETTLSELKTVLKSFLSQGQILKLEVKTDPSIMG 183

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Callicebus moloch (taxid: 9523)

>sp|B0VXH3|ATPO_CALJA ATP synthase subunit O, mitochondrial OS=Callithrix jacchus GN=ATP5O PE=3 SV=1

 Score =  142 bits (359), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 77/170 (45%), Positives = 108/170 (63%), Gaps = 20/170 (11%)

Query: 9   RSFSTSQVS--QQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISF-------- 58
           R F TS V    +LV+ PVQV+G +GRYATALYSAA+K K+L+ VEKEL+          
Sbjct: 14  RYFGTSVVRPFAKLVRPPVQVYGVEGRYATALYSAASKQKKLEQVEKELLRVAQILKEPK 73

Query: 59  ----------QKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMA 108
                     + S+K+++L  +  K+ FS  + NL+ LLAENG++ N  GV++ FS +M+
Sbjct: 74  VAASVLNPYVKHSIKVKSLSDIIAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMMS 133

Query: 109 AHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIG 158
            HRG++P  V TA PLEEA  SEL++ LK F  +G+ + L  K DPSI+G
Sbjct: 134 VHRGEVPCTVTTASPLEEATLSELKTVLKSFLSQGQILKLEVKTDPSIMG 183

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Callithrix jacchus (taxid: 9483)

>sp|Q2EN81|ATPO_PIG ATP synthase subunit O, mitochondrial OS=Sus scrofa GN=ATP5O PE=1 SV=1

 Score =  141 bits (356), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 110/170 (64%), Gaps = 20/170 (11%)

Query: 9   RSFSTSQVS--QQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISF-------- 58
           R FSTS V    +LV+ PVQ++G +GRYATALYSAA+K  +L+ VEKEL+          
Sbjct: 14  RCFSTSVVRPFAKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILKEPK 73

Query: 59  ----------QKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMA 108
                     ++S+K+++L  +  K+ FS  + NL+ LLAENG++ +  GVI+ FS +M+
Sbjct: 74  VAASIMNPYVKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLSSTPGVISAFSTMMS 133

Query: 109 AHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIG 158
            HRG++P  V TA PL+EA  +EL++ LK F  KG+ + L  KVDPSI+G
Sbjct: 134 VHRGEVPCSVTTASPLDEATLTELKTVLKSFLSKGQILKLEVKVDPSIMG 183

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Sus scrofa (taxid: 9823)

>sp|B2B9A1|ATPO_RHIFE ATP synthase subunit O, mitochondrial OS=Rhinolophus ferrumequinum GN=ATP5O PE=3 SV=1

 Score =  141 bits (356), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 77/178 (43%), Positives = 111/178 (62%), Gaps = 20/178 (11%)

Query: 1   MASFRPLARSFSTSQVS--QQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELIS- 57
           ++ F    R FSTS V    +LV+ PVQ++G +GRYATALYSAA+K  +L+ VEKEL+  
Sbjct: 6   VSGFSRQVRCFSTSVVRPFTKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRV 65

Query: 58  -----------------FQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVI 100
                             ++S+K+++L  +  K+ FS  + NL+ LLAENG++ N  GVI
Sbjct: 66  AQLLKEPKMAASIMNPYIKRSIKVKSLNDMTTKEKFSPLTSNLMNLLAENGRLNNTPGVI 125

Query: 101 NNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIG 158
           + FS IM+ HRG++P  V TA PL+EA  SEL++ L+ F  K + + L  K DPSI+G
Sbjct: 126 SAFSTIMSVHRGEVPCSVTTASPLDEATLSELKTVLQSFLSKNQILKLEVKTDPSIMG 183

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Rhinolophus ferrumequinum (taxid: 59479)

>sp|Q9DB20|ATPO_MOUSE ATP synthase subunit O, mitochondrial OS=Mus musculus GN=Atp5o PE=1 SV=1

 Score =  141 bits (355), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 76/170 (44%), Positives = 110/170 (64%), Gaps = 20/170 (11%)

Query: 9   RSFSTSQVSQ--QLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELIS--------- 57
           RSFSTS V    +LV+ PVQV+G +GRYATALYSAA+K K+LD VEKEL+          
Sbjct: 14  RSFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKEKKLDQVEKELLRVGQLLKDPK 73

Query: 58  ---------FQKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMA 108
                     ++++K+++L  + +++ FS  + NL+ LLAENG++ N  G+I+ FS IM+
Sbjct: 74  VSLAVLNPYIKRTVKVKSLNDITKREKFSPLTANLMNLLAENGRLGNTQGIISAFSTIMS 133

Query: 109 AHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIG 158
            HRG++P  V TA PL++A  SEL++ LK F    + + L  K DPSI+G
Sbjct: 134 VHRGEVPCTVTTASPLDDAVLSELKTVLKSFLSPNQILKLEIKTDPSIMG 183

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Mus musculus (taxid: 10090)

>sp|P13621|ATPO_BOVIN ATP synthase subunit O, mitochondrial OS=Bos taurus GN=ATP5O PE=1 SV=2

 Score =  137 bits (344), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 108/170 (63%), Gaps = 20/170 (11%)

Query: 9   RSFSTSQVS--QQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISF-------- 58
           R FSTS V    +LV+ PVQ++G +GRYATALYSAA+K  +L+ VEKEL+          
Sbjct: 14  RCFSTSVVRPFAKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILKEPK 73

Query: 59  ----------QKSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMA 108
                     ++S+K+++L  +  K+ FS  + NL+ LLAENG++ N   VI+ FS +M+
Sbjct: 74  MAASLLNPYVKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTMMS 133

Query: 109 AHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIG 158
            HRG++P  V TA  L+EA  +EL++ LK F  KG+ + L  K+DPSI+G
Sbjct: 134 VHRGEVPCTVTTASALDEATLTELKTVLKSFLSKGQVLKLEVKIDPSIMG 183

Mitochondrial membrane ATP synthase (F(1)F(0) ATP synthase or Complex V) produces ATP from ADP in the presence of a proton gradient across the membrane which is generated by electron transport complexes of the respiratory chain. F-type ATPases consist of two structural domains, F(1) - containing the extramembraneous catalytic core and F(0) - containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation. Part of the complex F(0) domain and the peripheric stalk, which acts as a stator to hold the catalytic alpha(3)beta(3) subcomplex and subunit a/ATP6 static relative to the rotary elements.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
357216922	163	ATPase [Bactericera cockerelli]	0.406	0.791	0.763	3e-55
90819982	209	putative ATP synthase oligomycin sensiti	0.473	0.717	0.550	4e-45
91077486	209	PREDICTED: similar to H+ transporting AT	0.479	0.727	0.561	2e-43
322799129	209	hypothetical protein SINV_08671 [Solenop	0.498	0.755	0.519	6e-41
307189529	208	ATP synthase subunit O, mitochondrial [C	0.479	0.730	0.538	1e-40
357628614	202	H+ transporting ATP synthase O subunit i	0.479	0.752	0.532	5e-40
288856345	207	ATP synthase subunit O, mitochondrial [N	0.473	0.724	0.532	1e-39
332016348	220	ATP synthase subunit O, mitochondrial [A	0.485	0.7	0.520	3e-39
383852147	207	PREDICTED: ATP synthase subunit O, mitoc	0.498	0.763	0.491	3e-39
318065010	209	H+ transporting ATP synthase O subunit [	0.479	0.727	0.526	9e-39

>gi|357216922|gb|AET71146.1| ATPase [Bactericera cockerelli]

 Score =  221 bits (563), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 113/148 (76%), Positives = 127/148 (85%), Gaps = 19/148 (12%)

Query: 30  TDGRYATALYSAATKLKQLDGVEKELISFQK-------------------SLKIEALKIV 70
           T+GRYATALYSAATKLKQL+GVEKELISFQK                   +LKIEALK +
Sbjct: 1   TEGRYATALYSAATKLKQLEGVEKELISFQKALKTDVKFRDFVLDPTIKKTLKIEALKSI 60

Query: 71  GQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKS 130
           GQK+ FSAASINLL+LLAENG++K+IDGVINNFSIIMAAHRGDLPVEVITARPL++ADK+
Sbjct: 61  GQKQKFSAASINLLSLLAENGRLKSIDGVINNFSIIMAAHRGDLPVEVITARPLDDADKT 120

Query: 131 ELQSTLKLFAKKGENILLTTKVDPSIIG 158
           ELQSTLKLFAKKGENI+LT+KVDPSIIG
Sbjct: 121 ELQSTLKLFAKKGENIILTSKVDPSIIG 148

Source: Bactericera cockerelli

Species: Bactericera cockerelli

Genus: Bactericera

Family: Triozidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|90819982|gb|ABD98749.1| putative ATP synthase oligomycin sensitivity conferral protein [Graphocephala atropunctata]

 Score =  187 bits (476), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 93/169 (55%), Positives = 119/169 (70%), Gaps = 19/169 (11%)

Query: 9   RSFSTSQVSQQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQ--------- 59
           RS STS +  Q+VK P+Q+FG +GRYATALYSAATKLKQL+ VE EL+ FQ         
Sbjct: 11  RSLSTSSMRHQMVKPPIQIFGLEGRYATALYSAATKLKQLETVESELVKFQGTMKTDKKL 70

Query: 60  ----------KSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAA 109
                     +SLK+EALK V      S  + NL+ LLAENG++KN++ +IN F ++M+A
Sbjct: 71  NEFIRDPSLKRSLKVEALKQVSSSLKLSPPTANLIGLLAENGRLKNLNAIINAFKVLMSA 130

Query: 110 HRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIG 158
           HRG++P EV TA+PL++A K EL + LK FAKKGENILL TKVDP+IIG
Sbjct: 131 HRGEIPCEVTTAKPLDDATKQELTAALKSFAKKGENILLQTKVDPNIIG 179

Source: Graphocephala atropunctata

Species: Graphocephala atropunctata

Genus: Graphocephala

Family: Cicadellidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91077486|ref|XP_968733.1| PREDICTED: similar to H+ transporting ATP synthase O subunit [Tribolium castaneum] gi|270002753|gb|EEZ99200.1| oligomycin sensitivity-conferring protein [Tribolium castaneum]

 Score =  182 bits (461), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 96/171 (56%), Positives = 118/171 (69%), Gaps = 19/171 (11%)

Query: 7   LARSFSTSQVSQQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQ------- 59
           L RSFSTS V+ Q+VK PVQVFG DGRYATALYSAA+K K LD VEK+L+ FQ       
Sbjct: 9   LVRSFSTSNVASQMVKPPVQVFGIDGRYATALYSAASKQKTLDSVEKDLLKFQSAIKSDP 68

Query: 60  ------------KSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIM 107
                       + LK EALK +  K + +A + NLL  LA+NG++KN+DGVIN F ++M
Sbjct: 69  KLREFIKNPTIKRGLKSEALKQIASKISLNAQTSNLLQTLADNGRLKNLDGVINAFKVMM 128

Query: 108 AAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIG 158
           AAHRG++  EVITAR L+ A KS+L+S LK F K  E I L+TKVDPSIIG
Sbjct: 129 AAHRGEVTCEVITARDLDAAQKSKLESVLKSFVKSSETIQLSTKVDPSIIG 179

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322799129|gb|EFZ20576.1| hypothetical protein SINV_08671 [Solenopsis invicta]

 Score =  174 bits (440), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 92/177 (51%), Positives = 122/177 (68%), Gaps = 19/177 (10%)

Query: 1   MASFRPLARSFSTSQVSQQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQK 60
           M+  R + R+FST+  +QQLVK P+QVFG +GRYATALYSAA+K K LD VEK+L +FQ 
Sbjct: 3   MSVGRIITRTFSTATAAQQLVKPPIQVFGLEGRYATALYSAASKQKALDAVEKDLNNFQG 62

Query: 61  SLK-------------------IEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVIN 101
            LK                   +EA K +G K + + A+ NLL LLAENG++  ++ +IN
Sbjct: 63  FLKTDTALLDFIKNPSIKRKDKVEAFKAIGSKVSMNPATGNLLTLLAENGRLTKLNAIIN 122

Query: 102 NFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIG 158
           ++ +IMAA+RG++  EVITA PL+   KS+L+STLK   KKG+ ILLTTKVDPSIIG
Sbjct: 123 SYKLIMAANRGEVVCEVITANPLDTDTKSKLESTLKRLMKKGQTILLTTKVDPSIIG 179

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189529|gb|EFN73906.1| ATP synthase subunit O, mitochondrial [Camponotus floridanus]

 Score =  172 bits (437), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 92/171 (53%), Positives = 119/171 (69%), Gaps = 19/171 (11%)

Query: 7   LARSFSTSQVSQQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQKSLKI-- 64
           + R+FS S V+QQLVK P+QVFG +GRYATAL+SAA+K K LD VEK+LI+FQ  LK   
Sbjct: 8   ITRTFSVSTVAQQLVKPPIQVFGLEGRYATALFSAASKQKALDAVEKDLITFQGLLKTDA 67

Query: 65  -----------------EALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIM 107
                            EA K +G K N + A+ NLL LLAENG++  I+ +IN + +IM
Sbjct: 68  KLTDFVKDPSIKRKDKAEAFKAIGNKVNINPATANLLTLLAENGRLGKINQIINLYKLIM 127

Query: 108 AAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIG 158
           AA+RG++  EVITA+PL+   KS+L+S LK F KKG+ ILL+TKVDPSIIG
Sbjct: 128 AANRGEVVCEVITAKPLDADTKSKLESALKGFLKKGQTILLSTKVDPSIIG 178

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357628614|gb|EHJ77886.1| H+ transporting ATP synthase O subunit isoform 1 [Danaus plexippus]

 Score =  171 bits (432), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 91/171 (53%), Positives = 113/171 (66%), Gaps = 19/171 (11%)

Query: 7   LARSFSTSQVSQQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQKS----- 61
           L RS STS  + QLVK PVQVFG +GRYA+ALYSAA+K K LD VEKEL  FQKS     
Sbjct: 2   LVRSLSTSSAAAQLVKPPVQVFGLEGRYASALYSAASKSKSLDAVEKELSQFQKSIKSDP 61

Query: 62  --------------LKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIM 107
                         LK++ALK V  K N SA + NLL L+AENG++  ++ VIN F ++M
Sbjct: 62  KVKEFIINPTLKRNLKVDALKQVAVKTNLSATTSNLLGLMAENGRLDKLEAVINAFKMMM 121

Query: 108 AAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIG 158
           AAHRG++  EVITA+PL+ A K  L++ LK F K  E + LT KVDPS+IG
Sbjct: 122 AAHRGEVTCEVITAKPLDPAQKQSLEAALKKFLKGNETLQLTAKVDPSLIG 172

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|288856345|ref|NP_001165823.1| ATP synthase subunit O, mitochondrial [Nasonia vitripennis]

 Score =  169 bits (429), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 91/171 (53%), Positives = 120/171 (70%), Gaps = 21/171 (12%)

Query: 7   LARSFSTSQVSQQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQ------- 59
           +AR+FS+S V+QQ+VK PVQVFG +GRYATAL+SAA+K K LD VEK+L+ FQ       
Sbjct: 9   IARTFSSSSVAQQMVKPPVQVFGLEGRYATALFSAASKQKSLDAVEKDLVKFQGQMKTDL 68

Query: 60  ------------KSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIM 107
                       + LK EA K +G   N   A+ NLL+LLAENG++  ++ VIN F +IM
Sbjct: 69  KLAEFIKDPSIKRKLKAEAFKKIGASLN--PATSNLLSLLAENGRLGKLNQVINAFKLIM 126

Query: 108 AAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIG 158
           AA+RG++  EVITA+PL+  +K +L+S LK F K+G+ ILLTTKVDPSIIG
Sbjct: 127 AANRGEVVCEVITAKPLDADNKGKLESALKAFLKQGQTILLTTKVDPSIIG 177

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332016348|gb|EGI57261.1| ATP synthase subunit O, mitochondrial [Acromyrmex echinatior]

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 90/173 (52%), Positives = 116/173 (67%), Gaps = 19/173 (10%)

Query: 5   RPLARSFSTSQVSQQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQKSLK- 63
           R + R+FSTS   QQ+VK P+QVFG +GRYATAL+SAATK K LD VEK+LISFQ  LK 
Sbjct: 18  REITRTFSTSTAVQQMVKPPIQVFGLEGRYATALFSAATKQKALDAVEKDLISFQGLLKK 77

Query: 64  ------------------IEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSI 105
                              EA K +G+K   S  + NLL LLAENG++  ++ +IN + +
Sbjct: 78  DTALIDFIKNPSIKRKDKAEAFKAIGKKSGMSPTTENLLTLLAENGRLAKLNVIINLYKL 137

Query: 106 IMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIG 158
           +MAA+RG++  EVITA PL+   K++L++TLK   KKGE  LLTTKVDPSIIG
Sbjct: 138 LMAANRGEVVCEVITASPLDADIKTKLETTLKRLLKKGETALLTTKVDPSIIG 190

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852147|ref|XP_003701590.1| PREDICTED: ATP synthase subunit O, mitochondrial-like [Megachile rotundata]

 Score =  168 bits (425), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 87/177 (49%), Positives = 120/177 (67%), Gaps = 19/177 (10%)

Query: 1   MASFRPLARSFSTSQVSQQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQK 60
           M+  R + RSFS+S  +QQ+VK P+QVFG DGRYATALYSAA+K K L+ VEK+L+ F+ 
Sbjct: 1   MSFSRVIVRSFSSSLATQQMVKPPIQVFGVDGRYATALYSAASKQKSLNAVEKDLLKFEG 60

Query: 61  SLKI-------------------EALKIVGQKKNFSAASINLLALLAENGKIKNIDGVIN 101
            LK                    E+LK +G K + S  + NLLALLAENG++  ++ +IN
Sbjct: 61  LLKTDQKLNEFVKDPAIKRKDKAESLKAIGSKISLSKETTNLLALLAENGRLGYLNSIIN 120

Query: 102 NFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIG 158
            F ++MAA+RG++P EV TA+PL+   K++L+  LK F  K +NILLTTKVDP+I+G
Sbjct: 121 TFKLLMAANRGEVPCEVTTAKPLDADMKAKLEKALKGFLSKNQNILLTTKVDPTILG 177

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|318065010|gb|ADV36665.1| H+ transporting ATP synthase O subunit [Antheraea yamamai]

 Score =  166 bits (421), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 90/171 (52%), Positives = 111/171 (64%), Gaps = 19/171 (11%)

Query: 7   LARSFSTSQVSQQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQKSL---- 62
           L RS STS  + QL+K PVQVFG +GRYA+ALYSAA K K L+ VEKEL  FQ+SL    
Sbjct: 9   LVRSLSTSAATAQLIKPPVQVFGLEGRYASALYSAAYKNKALEIVEKELTQFQQSLRTDA 68

Query: 63  ---------------KIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIM 107
                          K EALK V  K N SA + NLL  LAENG++  +D +IN F I+M
Sbjct: 69  KLKEFIINPTLKRNLKAEALKHVATKTNLSATTSNLLGALAENGRLSKLDTIINAFKIMM 128

Query: 108 AAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIG 158
           AAHRG++  EVITA+PL++A +  L++ LK F K  E I LT KVDPS+IG
Sbjct: 129 AAHRGEVTCEVITAKPLDQAQRQSLEAALKKFLKGNETIQLTAKVDPSLIG 179

Source: Antheraea yamamai

Species: Antheraea yamamai

Genus: Antheraea

Family: Saturniidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	317
RGD|621379	213	Atp5o "ATP synthase, H+ transp	0.438	0.652	0.471	2.5e-26
UNIPROTKB|Q5RD23	213	ATP5O "ATP synthase subunit O,	0.413	0.615	0.432	1.8e-23
UNIPROTKB|E2RPE8	225	ATP5O "Uncharacterized protein	0.413	0.582	0.425	2.9e-23
UNIPROTKB|J9P621	213	ATP5O "Uncharacterized protein	0.413	0.615	0.425	2.9e-23
UNIPROTKB|P48047	213	ATP5O "ATP synthase subunit O,	0.413	0.615	0.425	2.9e-23
UNIPROTKB|B0VXH3	213	ATP5O "ATP synthase subunit O,	0.413	0.615	0.432	2.9e-23
UNIPROTKB|B2B9A1	213	ATP5O "ATP synthase subunit O,	0.413	0.615	0.432	1.1e-23
UNIPROTKB|B1MT69	213	ATP5O "ATP synthase subunit O,	0.413	0.615	0.440	1.4e-23
UNIPROTKB|Q2EN81	213	ATP5O "ATP synthase subunit O,	0.413	0.615	0.410	1.6e-22
MGI|MGI:106341	213	Atp5o "ATP synthase, H+ transp	0.413	0.615	0.462	7.6e-25

RGD|621379 Atp5o "ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit" [Rattus norvegicus (taxid:10116)]

 Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
 Identities = 67/142 (47%), Positives = 92/142 (64%)

Query:   166 TTAPLKLARSFSTSQIS--QQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISF 223
             T+   +  RSFSTS +    +LV+ PVQV+G +GRYATALYSAA+K K+LD VEKEL+  
Sbjct:     6 TSVLSRQVRSFSTSVVRPFSKLVRPPVQVYGIEGRYATALYSAASKQKRLDQVEKELLRV 65

Query:   224 QQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFXXXXXXXXXXXXENGKIKNIDGV 283
              Q LK D K    VL+P I++S+K+++LK +  K+ F            ENG++ N  GV
Sbjct:    66 GQLLK-DPKVSLAVLNPYIKRSIKVKSLKDITTKEKFSPLTANLMNLLAENGRLGNTQGV 124

Query:   284 INNFSIIMAAHRGDLPVEVITA 305
             I+ FS IM+ HRG++P  V TA
Sbjct:   125 ISAFSTIMSVHRGEVPCTVTTA 146

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IDA

GO:0005496 "steroid binding" evidence=IDA

GO:0005739 "mitochondrion" evidence=ISO;TAS

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISO;IDA

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0008144 "drug binding" evidence=IEA;ISO

GO:0032403 "protein complex binding" evidence=IDA

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=IEA;ISO

GO:0045263 "proton-transporting ATP synthase complex, coupling factor F(o)" evidence=TAS

GO:0046034 "ATP metabolic process" evidence=IDA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0016887 "ATPase activity" evidence=ISO

UNIPROTKB|Q5RD23 ATP5O "ATP synthase subunit O, mitochondrial" [Pongo abelii (taxid:9601)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 58/134 (43%), Positives = 87/134 (64%)

Query:   174 RSFSTSQISQ--QLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDV 231
             R FSTS +    +LV+ PVQV+G +GRYATALYSAA+K  +L+ VEKEL+   Q LK + 
Sbjct:    14 RCFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILK-EP 72

Query:   232 KFRDFVLDPTIQKSLKIEALKIVGQKKNFXXXXXXXXXXXXENGKIKNIDGVINNFSIIM 291
             K    VL+P +++S+K+++L  +  K+ F            ENG++ N  GV++ FS +M
Sbjct:    73 KVAAPVLNPYVKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMM 132

Query:   292 AAHRGDLPVEVITA 305
             +AHRG++P  V +A
Sbjct:   133 SAHRGEVPCTVTSA 146

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

UNIPROTKB|E2RPE8 ATP5O "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 57/134 (42%), Positives = 86/134 (64%)

Query:   174 RSFSTSQIS--QQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDV 231
             R FSTS +    +LV+ PVQ++G +GRYATALYSAA+K  +L+ VEKEL+   Q LK + 
Sbjct:    26 RCFSTSVVRPFSKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILK-EP 84

Query:   232 KFRDFVLDPTIQKSLKIEALKIVGQKKNFXXXXXXXXXXXXENGKIKNIDGVINNFSIIM 291
             K    +++P I++S+K+++L  +  K+ F            ENG++ N  GVI+ FS +M
Sbjct:    85 KMAASIMNPYIKRSVKVKSLNDMTAKERFSPITSNLINLLAENGRLNNTPGVISAFSTMM 144

Query:   292 AAHRGDLPVEVITA 305
             + HRG++P  V TA
Sbjct:   145 SVHRGEVPCTVTTA 158

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

UNIPROTKB|J9P621 ATP5O "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 57/134 (42%), Positives = 86/134 (64%)

Query:   174 RSFSTSQIS--QQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDV 231
             R FSTS +    +LV+ PVQ++G +GRYATALYSAA+K  +L+ VEKEL+   Q LK + 
Sbjct:    14 RCFSTSVVRPFSKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILK-EP 72

Query:   232 KFRDFVLDPTIQKSLKIEALKIVGQKKNFXXXXXXXXXXXXENGKIKNIDGVINNFSIIM 291
             K    +++P I++S+K+++L  +  K+ F            ENG++ N  GVI+ FS +M
Sbjct:    73 KMAASIMNPYIKRSVKVKSLNDMTAKERFSPITSNLINLLAENGRLNNTPGVISAFSTMM 132

Query:   292 AAHRGDLPVEVITA 305
             + HRG++P  V TA
Sbjct:   133 SVHRGEVPCTVTTA 146

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

UNIPROTKB|P48047 ATP5O "ATP synthase subunit O, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 57/134 (42%), Positives = 86/134 (64%)

Query:   174 RSFSTSQISQ--QLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDV 231
             R FSTS +    +LV+ PVQV+G +GRYATALYSAA+K  +L+ VEKEL+   Q LK + 
Sbjct:    14 RCFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILK-EP 72

Query:   232 KFRDFVLDPTIQKSLKIEALKIVGQKKNFXXXXXXXXXXXXENGKIKNIDGVINNFSIIM 291
             K    VL+P +++S+K+++L  +  K+ F            ENG++ N  GV++ FS +M
Sbjct:    73 KVAASVLNPYVKRSIKVKSLNDITAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMM 132

Query:   292 AAHRGDLPVEVITA 305
             + HRG++P  V +A
Sbjct:   133 SVHRGEVPCTVTSA 146

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA

GO:0005496 "steroid binding" evidence=IEA

GO:0032403 "protein complex binding" evidence=IEA

GO:0006200 "ATP catabolic process" evidence=IDA

GO:0006754 "ATP biosynthetic process" evidence=NAS

GO:0015992 "proton transport" evidence=NAS

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=IMP;TAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=NAS;IDA

GO:0008144 "drug binding" evidence=IDA

GO:0016887 "ATPase activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0022857 "transmembrane transporter activity" evidence=IC

GO:0005215 "transporter activity" evidence=NAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|B0VXH3 ATP5O "ATP synthase subunit O, mitochondrial" [Callithrix jacchus (taxid:9483)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 58/134 (43%), Positives = 85/134 (63%)

Query:   174 RSFSTSQISQ--QLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDV 231
             R F TS +    +LV+ PVQV+G +GRYATALYSAA+K K+L+ VEKEL+   Q LK + 
Sbjct:    14 RYFGTSVVRPFAKLVRPPVQVYGVEGRYATALYSAASKQKKLEQVEKELLRVAQILK-EP 72

Query:   232 KFRDFVLDPTIQKSLKIEALKIVGQKKNFXXXXXXXXXXXXENGKIKNIDGVINNFSIIM 291
             K    VL+P ++ S+K+++L  +  K+ F            ENG++ N  GV++ FS +M
Sbjct:    73 KVAASVLNPYVKHSIKVKSLSDIIAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMM 132

Query:   292 AAHRGDLPVEVITA 305
             + HRG++P  V TA
Sbjct:   133 SVHRGEVPCTVTTA 146

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

UNIPROTKB|B2B9A1 ATP5O "ATP synthase subunit O, mitochondrial" [Rhinolophus ferrumequinum (taxid:59479)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 58/134 (43%), Positives = 86/134 (64%)

Query:   174 RSFSTSQISQ--QLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDV 231
             R FSTS +    +LV+ PVQ++G +GRYATALYSAA+K  +L+ VEKEL+   Q LK + 
Sbjct:    14 RCFSTSVVRPFTKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVAQLLK-EP 72

Query:   232 KFRDFVLDPTIQKSLKIEALKIVGQKKNFXXXXXXXXXXXXENGKIKNIDGVINNFSIIM 291
             K    +++P I++S+K+++L  +  K+ F            ENG++ N  GVI+ FS IM
Sbjct:    73 KMAASIMNPYIKRSIKVKSLNDMTTKEKFSPLTSNLMNLLAENGRLNNTPGVISAFSTIM 132

Query:   292 AAHRGDLPVEVITA 305
             + HRG++P  V TA
Sbjct:   133 SVHRGEVPCSVTTA 146

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

UNIPROTKB|B1MT69 ATP5O "ATP synthase subunit O, mitochondrial" [Callicebus moloch (taxid:9523)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 59/134 (44%), Positives = 86/134 (64%)

Query:   174 RSFSTSQISQ--QLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDV 231
             R FSTS +    +LV+ PVQV+G +GRYATALYSAA+K K+L+ VEKEL+   Q LK + 
Sbjct:    14 RYFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKQKKLEQVEKELLRVAQILK-EP 72

Query:   232 KFRDFVLDPTIQKSLKIEALKIVGQKKNFXXXXXXXXXXXXENGKIKNIDGVINNFSIIM 291
             K    VL+P ++ S+K+++L  +  K+ F            ENG++ N  GV++ FS +M
Sbjct:    73 KVAASVLNPYVKHSVKVKSLSDIIAKERFSPLTTNLINLLAENGRLSNTQGVVSAFSTMM 132

Query:   292 AAHRGDLPVEVITA 305
             + HRG++P  V TA
Sbjct:   133 SVHRGEIPCTVTTA 146

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

UNIPROTKB|Q2EN81 ATP5O "ATP synthase subunit O, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 261 (96.9 bits), Expect = 1.6e-22, P = 1.6e-22
 Identities = 55/134 (41%), Positives = 86/134 (64%)

Query:   174 RSFSTSQISQ--QLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDV 231
             R FSTS +    +LV+ PVQ++G +GRYATALYSAA+K  +L+ VEKEL+   Q LK + 
Sbjct:    14 RCFSTSVVRPFAKLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVAQILK-EP 72

Query:   232 KFRDFVLDPTIQKSLKIEALKIVGQKKNFXXXXXXXXXXXXENGKIKNIDGVINNFSIIM 291
             K    +++P +++S+K+++L  +  K+ F            ENG++ +  GVI+ FS +M
Sbjct:    73 KVAASIMNPYVKRSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLSSTPGVISAFSTMM 132

Query:   292 AAHRGDLPVEVITA 305
             + HRG++P  V TA
Sbjct:   133 SVHRGEVPCSVTTA 146

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=IEA

GO:0008144 "drug binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

MGI|MGI:106341 Atp5o "ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit" [Mus musculus (taxid:10090)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 62/134 (46%), Positives = 89/134 (66%)

Query:   174 RSFSTSQISQ--QLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDV 231
             RSFSTS +    +LV+ PVQV+G +GRYATALYSAA+K K+LD VEKEL+   Q LK D 
Sbjct:    14 RSFSTSVVRPFAKLVRPPVQVYGIEGRYATALYSAASKEKKLDQVEKELLRVGQLLK-DP 72

Query:   232 KFRDFVLDPTIQKSLKIEALKIVGQKKNFXXXXXXXXXXXXENGKIKNIDGVINNFSIIM 291
             K    VL+P I++++K+++L  + +++ F            ENG++ N  G+I+ FS IM
Sbjct:    73 KVSLAVLNPYIKRTVKVKSLNDITKREKFSPLTANLMNLLAENGRLGNTQGIISAFSTIM 132

Query:   292 AAHRGDLPVEVITA 305
             + HRG++P  V TA
Sbjct:   133 SVHRGEVPCTVTTA 146

GO:0000276 "mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)" evidence=ISO

GO:0005496 "steroid binding" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006200 "ATP catabolic process" evidence=ISO

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0008144 "drug binding" evidence=ISO

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0032403 "protein complex binding" evidence=ISO

GO:0042776 "mitochondrial ATP synthesis coupled proton transport" evidence=ISO

GO:0046034 "ATP metabolic process" evidence=ISO

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	317
pfam00213	171	pfam00213, OSCP, ATP synthase delta (OSCP) subunit	1e-23
pfam00213	171	pfam00213, OSCP, ATP synthase delta (OSCP) subunit	2e-21
COG0712	178	COG0712, AtpH, F0F1-type ATP synthase, delta subun	1e-16
PRK05758	177	PRK05758, PRK05758, F0F1 ATP synthase subunit delt	2e-16
COG0712	178	COG0712, AtpH, F0F1-type ATP synthase, delta subun	1e-15
PRK13429	181	PRK13429, PRK13429, F0F1 ATP synthase subunit delt	2e-13
PRK05758	177	PRK05758, PRK05758, F0F1 ATP synthase subunit delt	5e-13
TIGR01145	172	TIGR01145, ATP_synt_delta, ATP synthase, F1 delta	1e-09
TIGR01145	172	TIGR01145, ATP_synt_delta, ATP synthase, F1 delta	1e-09
PRK13429	181	PRK13429, PRK13429, F0F1 ATP synthase subunit delt	5e-08
PRK13430	271	PRK13430, PRK13430, F0F1 ATP synthase subunit delt	0.002

>gnl|CDD|215793 pfam00213, OSCP, ATP synthase delta (OSCP) subunit

 Score = 94.5 bits (236), Expect = 1e-23
 Identities = 48/146 (32%), Positives = 68/146 (46%), Gaps = 22/146 (15%)

Query: 32  GRYATALYSAATKLKQLDGVEKELISFQKSL-------------------KIEALKIVGQ 72
            RYA AL+  A +   LD VE++L + +  L                   K   LK V  
Sbjct: 3   RRYAKALFELAKEKGSLDEVEEDLEALKAVLAENPDLREFLSNPLISAEEKKALLKAVFG 62

Query: 73  KKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSEL 132
            K  S  + N L LLAENG++  +  +   F  +   HRG +   V +A PL E     L
Sbjct: 63  GK-LSELTKNFLKLLAENGRLSLLPEIAEEFEELYNEHRGIVEATVTSAVPLSEEQLKAL 121

Query: 133 QSTLKLFAKKGENILLTTKVDPSIIG 158
           ++ L+   K G+ + L TKVDPS+IG
Sbjct: 122 KAALE--KKTGKKVKLETKVDPSLIG 145

The ATP D subunit from E. coli is the same as the OSCP subunit which is this family. The ATP D subunit from metazoa are found in family pfam00401. Length = 171

>gnl|CDD|215793 pfam00213, OSCP, ATP synthase delta (OSCP) subunit

 Score = 88.7 bits (221), Expect = 2e-21
 Identities = 36/110 (32%), Positives = 54/110 (49%), Gaps = 1/110 (0%)

Query: 197 GRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQ 256
            RYA AL+  A +   LD VE++L + +  L  +   R+F+ +P I    K   LK V  
Sbjct: 3   RRYAKALFELAKEKGSLDEVEEDLEALKAVLAENPDLREFLSNPLISAEEKKALLKAVFG 62

Query: 257 KKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITAR 306
            K  S  + N L LLAENG++  +  +   F  +   HRG +   V +A 
Sbjct: 63  GK-LSELTKNFLKLLAENGRLSLLPEIAEEFEELYNEHRGIVEATVTSAV 111

The ATP D subunit from E. coli is the same as the OSCP subunit which is this family. The ATP D subunit from metazoa are found in family pfam00401. Length = 171

>gnl|CDD|223784 COG0712, AtpH, F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]

 Score = 76.1 bits (188), Expect = 1e-16
 Identities = 42/146 (28%), Positives = 66/146 (45%), Gaps = 22/146 (15%)

Query: 32  GRYATALYSAATKLKQLDGVEKELISFQ-------------------KSLKIEALKIVGQ 72
            RYA AL+  A +  QL+ VE+EL                          K E L  + +
Sbjct: 9   RRYAKALFELAEEKGQLEEVEEELTFLAEILKNSPKLKQLLSSPAVSAEDKKELLISIFK 68

Query: 73  KKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSEL 132
           K        N L LLAEN ++  +  ++  F  + A  RG +  EV +A  L +   ++L
Sbjct: 69  KIGDPLL-QNFLRLLAENKRLNLLPEILEEFLKLAAESRGIVEAEVTSAFELSDEQLTKL 127

Query: 133 QSTLKLFAKKGENILLTTKVDPSIIG 158
           ++ L+   K G+ + L  K+DPS+IG
Sbjct: 128 EAKLE--KKFGKKVKLNNKIDPSLIG 151

Length = 178

>gnl|CDD|235593 PRK05758, PRK05758, F0F1 ATP synthase subunit delta; Validated

 Score = 75.6 bits (187), Expect = 2e-16
 Identities = 42/145 (28%), Positives = 62/145 (42%), Gaps = 24/145 (16%)

Query: 33  RYATALYSAATKLKQLDGVEKELISFQ------------------KSLKIEALKIVGQKK 74
            YA AL+  A +   LD   +EL                         K + L  V   K
Sbjct: 10  PYAKALFEVALEKGSLDAWSEELTFLAEVAENEDLAALLSSPLVSAEQKKKLLAAVF--K 67

Query: 75  NFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQS 134
           + S    N L +LAENG++  +  ++  F  + A H   +  EV +A PL E    +L++
Sbjct: 68  SLSEYVQNFLKVLAENGRLALLPEILEQFEALRAEHENIVDAEVTSAFPLSEEQLDKLKA 127

Query: 135 TL-KLFAKKGENILLTTKVDPSIIG 158
            L K   +K   + L  KVDPS+IG
Sbjct: 128 ALEKRLGRK---VKLNEKVDPSLIG 149

Length = 177

>gnl|CDD|223784 COG0712, AtpH, F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]

 Score = 73.0 bits (180), Expect = 1e-15
 Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 1/109 (0%)

Query: 197 GRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQ 256
            RYA AL+  A +  QL+ VE+EL    + LK   K +  +  P +    K E L  + +
Sbjct: 9   RRYAKALFELAEEKGQLEEVEEELTFLAEILKNSPKLKQLLSSPAVSAEDKKELLISIFK 68

Query: 257 KKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITA 305
           K        N L LLAEN ++  +  ++  F  + A  RG +  EV +A
Sbjct: 69  KIGDPLL-QNFLRLLAENKRLNLLPEILEEFLKLAAESRGIVEAEVTSA 116

Length = 178

>gnl|CDD|237386 PRK13429, PRK13429, F0F1 ATP synthase subunit delta; Provisional

 Score = 66.8 bits (164), Expect = 2e-13
 Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 21/145 (14%)

Query: 33  RYATALYSAATKLKQLDGVEKELISFQKSL-------------------KIEALKIVGQK 73
           RYA AL+  A +  QLD V +EL    + L                   K   L+ +  K
Sbjct: 9   RYAKALFQLAKEKGQLDSVYEELKQLAELLEDSPELRDALSNPVLSAEEKKAVLEKLLGK 68

Query: 74  KNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQ 133
              S   +N L LLA+  ++  +  +   +  +    +G +   V +A PL EA +  ++
Sbjct: 69  LKVSPEVLNFLKLLADRRRLGILPEIAARYLELADEQKGIVRATVTSAVPLSEAQQEAIR 128

Query: 134 STLKLFAKKGENILLTTKVDPSIIG 158
             L+     G+ + L T VDPS+IG
Sbjct: 129 QKLE--KMTGKKVELDTAVDPSLIG 151

Length = 181

>gnl|CDD|235593 PRK05758, PRK05758, F0F1 ATP synthase subunit delta; Validated

 Score = 66.0 bits (162), Expect = 5e-13
 Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 3/108 (2%)

Query: 198 RYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQK 257
            YA AL+  A +   LD   +EL +F   +  +      +  P +    K + L  V   
Sbjct: 10  PYAKALFEVALEKGSLDAWSEEL-TFLAEVAENEDLAALLSSPLVSAEQKKKLLAAVF-- 66

Query: 258 KNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITA 305
           K+ S    N L +LAENG++  +  ++  F  + A H   +  EV +A
Sbjct: 67  KSLSEYVQNFLKVLAENGRLALLPEILEQFEALRAEHENIVDAEVTSA 114

Length = 177

>gnl|CDD|130215 TIGR01145, ATP_synt_delta, ATP synthase, F1 delta subunit

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 19/144 (13%)

Query: 33  RYATALYSAATKLKQLDGVEKELIS----FQKSLKIEAL----KIVGQKK---------- 74
            YA AL+  A +   L+   + L       + + +++       I  +KK          
Sbjct: 4   PYAKALFEIANEKSSLEEWGEMLNFVKEVLKNNKELKKFLSNPLISAEKKKEFIKNVFGE 63

Query: 75  NFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQS 134
               +S+NLL LLAENG++  +  +++ F  +    +    VEVI+A+PL E  ++++  
Sbjct: 64  QLDESSLNLLLLLAENGRLAALPDILDQFLKLSYEAQQTADVEVISAKPLTEDQQAKIAE 123

Query: 135 TLKLFAKKGENILLTTKVDPSIIG 158
            L+      + + L  KVD  +IG
Sbjct: 124 KLEKITGAAK-VKLNCKVDKDLIG 146

This model describes the ATP synthase delta subunit in bacteria, mitochondria, and chloroplasts. It is sometimes called OSCP for Oligomycin Sensitivity Conferring Protein. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Delta subunit belongs to the F1 cluster or sector and functionally implicated in the overall stability of the complex. Expression of truncated forms of this subunit results in low ATPase activity [Energy metabolism, ATP-proton motive force interconversion]. Length = 172

>gnl|CDD|130215 TIGR01145, ATP_synt_delta, ATP synthase, F1 delta subunit

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 1/108 (0%)

Query: 198 RYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQK 257
            YA AL+  A +   L+   + L   ++ LK + + + F+ +P I    K E +K V   
Sbjct: 4   PYAKALFEIANEKSSLEEWGEMLNFVKEVLKNNKELKKFLSNPLISAEKKKEFIKNVF-G 62

Query: 258 KNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITA 305
           +    +S+NLL LLAENG++  +  +++ F  +    +    VEVI+A
Sbjct: 63  EQLDESSLNLLLLLAENGRLAALPDILDQFLKLSYEAQQTADVEVISA 110

This model describes the ATP synthase delta subunit in bacteria, mitochondria, and chloroplasts. It is sometimes called OSCP for Oligomycin Sensitivity Conferring Protein. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Delta subunit belongs to the F1 cluster or sector and functionally implicated in the overall stability of the complex. Expression of truncated forms of this subunit results in low ATPase activity [Energy metabolism, ATP-proton motive force interconversion]. Length = 172

>gnl|CDD|237386 PRK13429, PRK13429, F0F1 ATP synthase subunit delta; Provisional

 Score = 51.7 bits (125), Expect = 5e-08
 Identities = 28/108 (25%), Positives = 50/108 (46%)

Query: 198 RYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQK 257
           RYA AL+  A +  QLD V +EL    + L+   + RD + +P +    K   L+ +  K
Sbjct: 9   RYAKALFQLAKEKGQLDSVYEELKQLAELLEDSPELRDALSNPVLSAEEKKAVLEKLLGK 68

Query: 258 KNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITA 305
              S   +N L LLA+  ++  +  +   +  +    +G +   V +A
Sbjct: 69  LKVSPEVLNFLKLLADRRRLGILPEIAARYLELADEQKGIVRATVTSA 116

Length = 181

>gnl|CDD|237387 PRK13430, PRK13430, F0F1 ATP synthase subunit delta; Provisional

 Score = 38.8 bits (91), Expect = 0.002
 Identities = 36/147 (24%), Positives = 57/147 (38%), Gaps = 26/147 (17%)

Query: 32  GRYATALYSAATKLKQLDGVEKELISFQKSL-------------------KIEAL-KIVG 71
           G  A    + A     LD VE EL    + L                   K E L +++ 
Sbjct: 103 GVRALLASAEAQG--ALDDVEDELFRLGRILASNPELRLALSDRAAPAEAKRELLARLLY 160

Query: 72  QKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSE 131
            K   +  +  L        + ++I+  ++  S + AA RG     V TA PL +  K  
Sbjct: 161 GK--VTPVTERLAEQAVGRPRGRSIEEGLDELSNLAAARRGRSVATVTTAVPLSDEQKQR 218

Query: 132 LQSTLKLFAKKGENILLTTKVDPSIIG 158
           L + L      G  + L ++VDPS++G
Sbjct: 219 LAAALS--RIYGRPVHLNSEVDPSVLG 243

Length = 271

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	317
KOG1662|consensus	210		100.0
PRK13436	179	F0F1 ATP synthase subunit delta; Provisional	100.0
COG0712	178	AtpH F0F1-type ATP synthase, delta subunit (mitoch	100.0
PRK13434	184	F0F1 ATP synthase subunit delta; Provisional	100.0
PRK13441	180	F0F1 ATP synthase subunit delta; Provisional	100.0
PRK13430	271	F0F1 ATP synthase subunit delta; Provisional	99.98
TIGR01145	172	ATP_synt_delta ATP synthase, F1 delta subunit. Thi	99.97
CHL00119	184	atpD ATP synthase CF1 delta subunit; Validated	99.97
PRK08474	176	F0F1 ATP synthase subunit delta; Validated	99.97
PRK13429	181	F0F1 ATP synthase subunit delta; Provisional	99.97
PF00213	172	OSCP: ATP synthase delta (OSCP) subunit; InterPro:	99.97
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	99.97
PRK05758	177	F0F1 ATP synthase subunit delta; Validated	99.96
KOG1662|consensus	210		99.94
PRK13436	179	F0F1 ATP synthase subunit delta; Provisional	99.92
COG0712	178	AtpH F0F1-type ATP synthase, delta subunit (mitoch	99.91
PRK13434	184	F0F1 ATP synthase subunit delta; Provisional	99.91
CHL00119	184	atpD ATP synthase CF1 delta subunit; Validated	99.91
PRK08474	176	F0F1 ATP synthase subunit delta; Validated	99.9
TIGR01145	172	ATP_synt_delta ATP synthase, F1 delta subunit. Thi	99.9
PRK13431	180	F0F1 ATP synthase subunit delta; Provisional	99.89
PRK13429	181	F0F1 ATP synthase subunit delta; Provisional	99.89
PRK13441	180	F0F1 ATP synthase subunit delta; Provisional	99.88
PRK05758	177	F0F1 ATP synthase subunit delta; Validated	99.86
PRK13431	180	F0F1 ATP synthase subunit delta; Provisional	99.86
PRK13430	271	F0F1 ATP synthase subunit delta; Provisional	99.85
PF00213	172	OSCP: ATP synthase delta (OSCP) subunit; InterPro:	99.85
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	99.82
TIGR03321	246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	99.58
PRK14474	250	F0F1 ATP synthase subunit B; Provisional	98.58
PRK06669	281	fliH flagellar assembly protein H; Validated	96.79
TIGR03825	255	FliH_bacil flagellar assembly protein FliH. This b	90.9
PRK03963	198	V-type ATP synthase subunit E; Provisional	90.2
PF02108	128	FliH: Flagellar assembly protein FliH; InterPro: I	89.93
PRK02292	188	V-type ATP synthase subunit E; Provisional	87.94
PRK06937	204	type III secretion system protein; Reviewed	87.2
PRK06328	223	type III secretion system protein; Validated	85.62
PRK05687	246	fliH flagellar assembly protein H; Validated	84.48

>KOG1662|consensus

Probab=100.00  E-value=8.8e-38  Score=266.30  Aligned_cols=174  Identities=36%  Similarity=0.543  Sum_probs=161.2

Q ss_pred             hhhhh---hhhcccCCCchhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------------------HHHHHHHH
Q psy4192          11 FSTSQ---VSQQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQK-------------------SLKIEALK   68 (317)
Q Consensus        11 ~~~~~---~~~~~~~~~~~~~~va~~YA~AL~~~a~e~~~~~~v~~~l~~l~~-------------------~~K~~ll~   68 (317)
                      |++|.   ++++..+||+|.+|+.++||.|||+.|...+++|.+..||..+.+                   +.|...++
T Consensus        11 ~~~s~~~aaaq~tv~pPVql~G~eG~YAtaLY~AA~K~~~ld~vetdL~kl~~v~k~~pk~~~f~~nP~l~~~~k~~~i~   90 (210)
T KOG1662|consen   11 LSSSLARAAAQLTVKPPVQLYGLEGRYATALYSAAVKNSKLDQVETDLNKLEQVLKTDPKFAQFVLNPTLTREKKKTAID   90 (210)
T ss_pred             cchHHHHHHHhCCCCCCeEEecccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChHHHHHhcCCccchHHHHHHHH
Confidence            55554   334558999999999999999999999999999999999999987                   88999999


Q ss_pred             HHhccCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEE
Q psy4192          69 IVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILL  148 (317)
Q Consensus        69 ~~~~~~~~~~~~~nfL~vl~e~~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l  148 (317)
                      ++.++.++.+++.|||.+|+||||++.+.+|+.+|..++++++|.+.|+|+||.||+..+.++|++.|++.+++|+++.+
T Consensus        91 di~~~~~~~~~t~NflnlLaeNgRL~~l~~Ivk~F~~lm~ahrGev~~~VtSa~pLd~~~~k~l~~~l~k~l~~gk~l~v  170 (210)
T KOG1662|consen   91 DIVEKLKLAPLTKNFLNLLAENGRLNNLTEIVKAFETLMNAHRGEVKVEVTSAEPLDAKQLKQLEKALQKILGGGKKLKV  170 (210)
T ss_pred             HHHHHhcccHhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHhCCceEEEEEecccCChHHHHHHHHHHHHHhcCCceEEE
Confidence            99998789999999999999999999999999999999999999999999999999999999999999999888999999


Q ss_pred             EEEecCCCcCCcEeccCCcchhhhhhccchhhhhhhh
Q psy4192         149 TTKVDPSIIGDPKSNALTTAPLKLARSFSTSQISQQL  185 (317)
Q Consensus       149 ~~~vDpsLIGG~~I~vg~~viD~svr~~~~~~~~~~~  185 (317)
                      +++|||||+||++|++||+.+|.||++ ...++.+.|
T Consensus       171 ~~~vdPSI~GGliVeiGdK~vDmSI~t-r~q~l~~ll  206 (210)
T KOG1662|consen  171 ENKVDPSIIGGLIVEIGDKYVDMSIKT-RLQKLNKLL  206 (210)
T ss_pred             EeecChhhhcceEEEEcCeeEeeeHHH-HHHHHHHHh
Confidence            999999999999999999999999999 665555544

>PRK13436 F0F1 ATP synthase subunit delta; Provisional

Probab=100.00  E-value=5.2e-36  Score=260.96  Aligned_cols=156  Identities=20%  Similarity=0.248  Sum_probs=149.9

Q ss_pred             hhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------------------HHHHHHHHHHhccCCCCHHHHHHHHHHH
Q psy4192          28 FGTDGRYATALYSAATKLKQLDGVEKELISFQK-------------------SLKIEALKIVGQKKNFSAASINLLALLA   88 (317)
Q Consensus        28 ~~va~~YA~AL~~~a~e~~~~~~v~~~l~~l~~-------------------~~K~~ll~~~~~~~~~~~~~~nfL~vl~   88 (317)
                      ..|+++||+|||++|.+.+.++.|+++|..+.+                   ++|.+++..+|+ +++++.+.|||++|+
T Consensus         5 ~~va~~YA~AL~~~a~e~~~l~~v~~~l~~~~~~~~~~~~l~~~l~~P~i~~~~K~~~l~~l~~-~~~~~~~~nfl~ll~   83 (179)
T PRK13436          5 NKNIYNYAEALFDIANEENNVEKYINEVFKIIEILKNNKDLIKLLTSYFIDKEEKFKIIDKIFS-AKIDIYLVNFLKILA   83 (179)
T ss_pred             HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcChHHHHHHcCCCCCHHHHHHHHHHHHh-ccCCHHHHHHHHHHH
Confidence            378999999999999999999999999999987                   889999999997 479999999999999


Q ss_pred             HcCCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEeccCCcc
Q psy4192          89 ENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNALTTA  168 (317)
Q Consensus        89 e~~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~vg~~v  168 (317)
                      +|+|+.+|++|+++|.++++++.|+..|+|+||.|||++|+++|.+.+++++  |+++.++++||||||||++|++||++
T Consensus        84 ~~~R~~~l~~I~~~f~~~~~~~~~~~~~~V~sA~~Ls~~~~~~i~~~l~~~~--g~~v~l~~~vDpslIGGi~i~~gd~v  161 (179)
T PRK13436         84 KNNLFIYIKQILKKFVKLSNEKLNITYGEIYTTEPLSEVQISRFESKLSKKL--NKKVHLVNKIDPKLIAGIKIKVDNKV  161 (179)
T ss_pred             HCChHHHHHHHHHHHHHHHHHHcCeEEEEEEecCCCCHHHHHHHHHHHHHHH--CCeEEEEeecCHHHcCceEEEECCEE
Confidence            9999999999999999999999999999999999999999999999999999  78999999999999999999999999


Q ss_pred             hhhhhhccchhhhhhhhhc
Q psy4192         169 PLKLARSFSTSQISQQLVK  187 (317)
Q Consensus       169 iD~svr~~~~~~~~~~~~~  187 (317)
                      ||+|+|+ .+.+++++|.+
T Consensus       162 iD~Sik~-~L~~l~~~l~~  179 (179)
T PRK13436        162 FENSIKS-KLKELKKQVLK  179 (179)
T ss_pred             eehhHHH-HHHHHHHHHhC
Confidence            9999999 99999888754

>COG0712 AtpH F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]

Probab=100.00  E-value=3.7e-35  Score=254.45  Aligned_cols=157  Identities=27%  Similarity=0.330  Sum_probs=148.7

Q ss_pred             chhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------------------HHHHHHHHHHhccCCCCHHHHHHHH
Q psy4192          25 VQVFGTDGRYATALYSAATKLKQLDGVEKELISFQK-------------------SLKIEALKIVGQKKNFSAASINLLA   85 (317)
Q Consensus        25 ~~~~~va~~YA~AL~~~a~e~~~~~~v~~~l~~l~~-------------------~~K~~ll~~~~~~~~~~~~~~nfL~   85 (317)
                      ....+++++||+|||++|.|++.++.|+++|..+.+                   ++|.+++.++|++ ..++++.|||.
T Consensus         2 ~~~~~va~~YA~ALf~~A~e~~~~~~~~~~L~~~~~i~~~~~~l~~ll~sp~~~~~~k~~li~~i~~~-~~~~~~~nfL~   80 (178)
T COG0712           2 SELSTVARRYAKALFELAEEKGQLEEVEEELTFLAEILKNSPKLKQLLSSPAVSAEDKKELLISIFKK-IGDPLLQNFLR   80 (178)
T ss_pred             chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCHhHHHHhcCcCCCHHHHHHHHHHHHhc-cCcHHHHHHHH
Confidence            456789999999999999999999999999999887                   8999999999983 44599999999


Q ss_pred             HHHHcCCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEeccC
Q psy4192          86 LLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNAL  165 (317)
Q Consensus        86 vl~e~~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~vg  165 (317)
                      +|++|+|+.++|+|+..|..+.++++|+..|+|+||.|||++|+++|.+.|++++  |+++.+.++||||||||++|++|
T Consensus        81 ll~en~Rl~~l~~I~~~~~~l~~~~~~~~~a~V~SA~~Ls~~q~~~l~~~l~k~~--~~~v~i~~~VD~sliGG~iI~vg  158 (178)
T COG0712          81 LLAENKRLNLLPEILEEFLKLAAESRGIVEAEVTSAFELSDEQLTKLEAKLEKKF--GKKVKLNNKIDPSLIGGLIIKVG  158 (178)
T ss_pred             HHHHccchhhHHHHHHHHHHHHHHhcCceEEEEEEcCCCCHHHHHHHHHHHHHHh--CCCceEEeeeCHHHhCceEEEEC
Confidence            9999999999999999999999999999999999999999999999999999999  89999999999999999999999


Q ss_pred             Ccchhhhhhccchhhhhhhh
Q psy4192         166 TTAPLKLARSFSTSQISQQL  185 (317)
Q Consensus       166 ~~viD~svr~~~~~~~~~~~  185 (317)
                      |.+||+|+|+ .+.++...+
T Consensus       159 d~viD~Svr~-~L~~l~~~l  177 (178)
T COG0712         159 DEVIDGSVRG-KLKRLAKAL  177 (178)
T ss_pred             CEEEechHHH-HHHHHHHhc
Confidence            9999999999 888877654

>PRK13434 F0F1 ATP synthase subunit delta; Provisional

Probab=100.00  E-value=4.7e-35  Score=256.09  Aligned_cols=154  Identities=19%  Similarity=0.266  Sum_probs=147.1

Q ss_pred             hhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------------------HHHHHHHHHHhccCCCCHHHHHHHHHHH
Q psy4192          28 FGTDGRYATALYSAATKLKQLDGVEKELISFQK-------------------SLKIEALKIVGQKKNFSAASINLLALLA   88 (317)
Q Consensus        28 ~~va~~YA~AL~~~a~e~~~~~~v~~~l~~l~~-------------------~~K~~ll~~~~~~~~~~~~~~nfL~vl~   88 (317)
                      .+|++|||+|||+   +.+.+++|.++|..+.+                   ++|.+++.++++ +++++.+.|||++|+
T Consensus         4 ~~va~rYA~AL~~---~~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~P~i~~~~K~~~l~~~~~-~~~~~~~~nfl~lL~   79 (184)
T PRK13434          4 SGVSKVYASALLG---AANSPEEVEQELGDLVQLLFKDEKIRNFFLSPTVSPEEKEQTLAKNLR-GKISDITLNFLGVLL   79 (184)
T ss_pred             hhhHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHH-ccCCHHHHHHHHHHH
Confidence            4799999999999   56899999999988887                   789999999996 579999999999999


Q ss_pred             HcCCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEeccCCcc
Q psy4192          89 ENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNALTTA  168 (317)
Q Consensus        89 e~~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~vg~~v  168 (317)
                      +|+|+.++++|+..|.+++++++|+..|+|+||.|||++|+++|.+.|++++  |+++.++++||||||||++|++||++
T Consensus        80 e~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~sA~~Ls~~q~~~l~~~L~k~~--g~~v~l~~~vDpsLIGG~ii~igd~v  157 (184)
T PRK13434         80 NKGRFIYLPEIQKDFTVELDKKKGRVRAQIVSYPSLEPAQVDKLGSILSEKF--KSEFILEVSEDKNLLGGFVVQFNDLK  157 (184)
T ss_pred             HCCcHHHHHHHHHHHHHHHHHHcCeEEEEEEEcCCCCHHHHHHHHHHHHHHH--CCEeEEEeeeChHHcCceEEEECCEE
Confidence            9999999999999999999999999999999999999999999999999999  89999999999999999999999999


Q ss_pred             hhhhhhccchhhhhhhhhcc
Q psy4192         169 PLKLARSFSTSQISQQLVKA  188 (317)
Q Consensus       169 iD~svr~~~~~~~~~~~~~~  188 (317)
                      ||+|+|+ ++.+++++|.+.
T Consensus       158 iD~Svk~-~L~~l~~~l~~~  176 (184)
T PRK13434        158 IEKSIAS-QLGEIKKAMLEK  176 (184)
T ss_pred             EeHhHHH-HHHHHHHHHHhc
Confidence            9999999 999999999766

>PRK13441 F0F1 ATP synthase subunit delta; Provisional

Probab=100.00  E-value=3.9e-33  Score=243.23  Aligned_cols=158  Identities=17%  Similarity=0.196  Sum_probs=149.6

Q ss_pred             hhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----------------HHHHHHHHHHhc--cCCCCHHHHHHHHHHHH
Q psy4192          28 FGTDGRYATALYSAATKLKQLDGVEKELISFQK----------------SLKIEALKIVGQ--KKNFSAASINLLALLAE   89 (317)
Q Consensus        28 ~~va~~YA~AL~~~a~e~~~~~~v~~~l~~l~~----------------~~K~~ll~~~~~--~~~~~~~~~nfL~vl~e   89 (317)
                      ..++++||+|||++|.+.+.+++|.++|..+.+                ++|.++++.+++  ++.+++.+.|||++|++
T Consensus         4 ~~va~~YA~AL~~~a~e~~~l~~v~~~l~~~~~~~~~~~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~~~nfl~vL~~   83 (180)
T PRK13441          4 SAIASKYARALLNVAIELEKEEEYGEFLDLVCQIYESAKEFFDNPIVKPEKKVSLIKEIMKEFGQEMDEFFENFLNLVFE   83 (180)
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHH
Confidence            368999999999999999999999999988777                889999999974  24699999999999999


Q ss_pred             cCCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEeccCCcch
Q psy4192          90 NGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNALTTAP  169 (317)
Q Consensus        90 ~~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~vg~~vi  169 (317)
                      |+|+.++++|+..|..++++++|+..|+|+||.||+++++++|.+.+++++  |+++.+.++|||+||||+++++||++|
T Consensus        84 ~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~sA~~L~~~~~~~i~~~l~k~~--~~~v~l~~~vD~sliGG~~i~ig~~~~  161 (180)
T PRK13441         84 NKRQKLLPQIRALFEYEKILSEQKVPVNLTTAHELSDEELKLLRKFVRKYV--LRDPVFEETIDESLIAGAVVEFEGKRL  161 (180)
T ss_pred             CChHHHHHHHHHHHHHHHHHhcCeeEEEEEecccCCHHHHHHHHHHHHHHH--CCcceEEeeeChHHhCcEEEEECCEEE
Confidence            999999999999999999999999999999999999999999999999998  899999999999999999999999999


Q ss_pred             hhhhhccchhhhhhhhhcc
Q psy4192         170 LKLARSFSTSQISQQLVKA  188 (317)
Q Consensus       170 D~svr~~~~~~~~~~~~~~  188 (317)
                      |+|+|+ .+.+++++|.|+
T Consensus       162 D~Sik~-~L~~l~~~l~~~  179 (180)
T PRK13441        162 DVTVQG-RLKKIAREVLKR  179 (180)
T ss_pred             eHhHHH-HHHHHHHHHhhC
Confidence            999999 999999998775

>PRK13430 F0F1 ATP synthase subunit delta; Provisional

Probab=99.98  E-value=3.4e-31  Score=244.42  Aligned_cols=175  Identities=21%  Similarity=0.240  Sum_probs=162.4

Q ss_pred             hhhhhhhhhhhcccCCCchhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------------------HHHHHHHH
Q psy4192           8 ARSFSTSQVSQQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQK-------------------SLKIEALK   68 (317)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~va~~YA~AL~~~a~e~~~~~~v~~~l~~l~~-------------------~~K~~ll~   68 (317)
                      |..+...++++--..|+-...++..-+..|||++|.+.|++++|+++|..+..                   ++|.+++.
T Consensus        77 ~~~~~~~~v~~rWs~~~dl~~~~e~l~~~ALf~~A~e~g~ld~v~~eL~~~~~~l~~~~~l~~~L~~p~i~~e~K~~ll~  156 (271)
T PRK13430         77 TLEVVSDAVRQRWSRPRDLADALEELGVRALLASAEAQGALDDVEDELFRLGRILASNPELRLALSDRAAPAEAKRELLA  156 (271)
T ss_pred             HHHHHHHHHHhhccCchhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHH
Confidence            44455555555556788899999999999999999999999999999999877                   88999999


Q ss_pred             HHhccCCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEE
Q psy4192          69 IVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILL  148 (317)
Q Consensus        69 ~~~~~~~~~~~~~nfL~vl~e~~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l  148 (317)
                      .+|+ +.+++.+.||+.+|++++|+.++++|+..|.+++++++|+..|+|+||.||+++|+++|.+.|+++|  |++|.+
T Consensus       157 ~l~~-~~~~~~~~nfl~~lv~~~R~~~l~~i~~~f~~l~~~~~~~~~a~VtSA~pLs~~q~~~L~~~L~k~~--g~~V~l  233 (271)
T PRK13430        157 RLLY-GKVTPVTERLAEQAVGRPRGRSIEEGLDELSNLAAARRGRSVATVTTAVPLSDEQKQRLAAALSRIY--GRPVHL  233 (271)
T ss_pred             HHHh-ccCCHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHcCeeEEEEEecCCCCHHHHHHHHHHHHHHH--CCceEE
Confidence            9997 5799999999999999999999999999999999999999999999999999999999999999999  899999


Q ss_pred             EEEecCCCcCCcEeccCCcchhhhhhccchhhhhhhhh
Q psy4192         149 TTKVDPSIIGDPKSNALTTAPLKLARSFSTSQISQQLV  186 (317)
Q Consensus       149 ~~~vDpsLIGG~~I~vg~~viD~svr~~~~~~~~~~~~  186 (317)
                      +++|||+||||++|++||++||+||++ .+.+++++|.
T Consensus       234 ~~~VDpsLIGGivI~vGd~viD~Sv~~-rL~~L~~~L~  270 (271)
T PRK13430        234 NSEVDPSVLGGMRVQVGDEVIDGSVAG-RLERLRRRLA  270 (271)
T ss_pred             EeeECccccCcEEEEECCEEEehhHHH-HHHHHHHHhc
Confidence            999999999999999999999999999 9999988763

>TIGR01145 ATP_synt_delta ATP synthase, F1 delta subunit

Probab=99.97  E-value=3e-31  Score=229.75  Aligned_cols=152  Identities=28%  Similarity=0.374  Sum_probs=145.0

Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------------------HHHHHHHHHHhccCCCCHHHHHHHHHHHHc
Q psy4192          30 TDGRYATALYSAATKLKQLDGVEKELISFQK-------------------SLKIEALKIVGQKKNFSAASINLLALLAEN   90 (317)
Q Consensus        30 va~~YA~AL~~~a~e~~~~~~v~~~l~~l~~-------------------~~K~~ll~~~~~~~~~~~~~~nfL~vl~e~   90 (317)
                      ++++||+|||++|.+.++++.|+++|..+.+                   ++|.++++++|+ +++++.+.|||++|+++
T Consensus         1 va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~l~~-~~~~~~~~nfl~~l~~~   79 (172)
T TIGR01145         1 VARPYAKALFEIANEKSSLEEWGEMLNFVKEVLKNNKELKKFLSNPLISAEKKKEFIKNVFG-EQLDESSLNLLLLLAEN   79 (172)
T ss_pred             CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHC
Confidence            5799999999999999999999999999988                   889999999997 57999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCC-eEEEEEEecCCCcCCcEeccCCcch
Q psy4192          91 GKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGE-NILLTTKVDPSIIGDPKSNALTTAP  169 (317)
Q Consensus        91 ~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~-~i~l~~~vDpsLIGG~~I~vg~~vi  169 (317)
                      +|+.++++|+.+|.+++++..|+..++|+||.||+++++++|.+.+++++  |+ ++.+.+++||+||||+++++|+++|
T Consensus        80 ~r~~~l~~I~~~~~~~~~~~~~~~~~~v~sa~~L~~~~~~~l~~~l~~~~--~~~~v~~~~~vd~~ligGi~i~~~~~~i  157 (172)
T TIGR01145        80 GRLAALPDILDQFLKLSYEAQQTADVEVISAKPLTEDQQAKIAEKLEKIT--GAAKVKLNCKVDKDLIGGVIIRIGDRVI  157 (172)
T ss_pred             CcHHHHHHHHHHHHHHHHHhcCEEEEEEEEccCCCHHHHHHHHHHHHHHh--CCCeEEEEEeECHHHhCceEEEECCEEE
Confidence            99999999999999999999999999999999999999999999999999  56 9999999999999999999999999


Q ss_pred             hhhhhccchhhhhhhh
Q psy4192         170 LKLARSFSTSQISQQL  185 (317)
Q Consensus       170 D~svr~~~~~~~~~~~  185 (317)
                      |+|+++ .+++|+.+|
T Consensus       158 D~Si~~-~L~~l~~~l  172 (172)
T TIGR01145       158 DGSVRG-QLKRLSRQL  172 (172)
T ss_pred             ehhHHH-HHHHHHhhC
Confidence            999998 888887654

This model describes the ATP synthase delta subunit in bacteria, mitochondria, and chloroplasts. It is sometimes called OSCP for Oligomycin Sensitivity Conferring Protein. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Delta subunit belongs to the F1 cluster or sector and functionally implicated in the overall stability of the complex. Expression of truncated forms of this subunit results in low ATPase activity.

>CHL00119 atpD ATP synthase CF1 delta subunit; Validated

Probab=99.97  E-value=3.8e-31  Score=231.47  Aligned_cols=158  Identities=22%  Similarity=0.270  Sum_probs=149.4

Q ss_pred             hhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------------------HHHHHHHHHHhccCCCCHHHHHHHHHH
Q psy4192          27 VFGTDGRYATALYSAATKLKQLDGVEKELISFQK-------------------SLKIEALKIVGQKKNFSAASINLLALL   87 (317)
Q Consensus        27 ~~~va~~YA~AL~~~a~e~~~~~~v~~~l~~l~~-------------------~~K~~ll~~~~~~~~~~~~~~nfL~vl   87 (317)
                      ...++++||+|||++|.+.+.++.|+++|..+.+                   ++|.+++.++|+ +++++.+.|||++|
T Consensus         5 ~~~va~~YA~AL~~~a~e~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~p~i~~~~K~~ii~~~~~-~~~~~~~~nfl~~L   83 (184)
T CHL00119          5 VSKIAQPYAEALLEFAKEKNIMEQITADIQLILTFLNESPELKKFLANPLISKNAKKEVIKKTFG-SQINENTLKFLMVL   83 (184)
T ss_pred             HhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHH-hccCHHHHHHHHHH
Confidence            4579999999999999999999999999998887                   889999999997 47999999999999


Q ss_pred             HHcCCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEeccCCc
Q psy4192          88 AENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNALTT  167 (317)
Q Consensus        88 ~e~~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~vg~~  167 (317)
                      ++|+|+.++++|+..|.+++++.+|+..++|+||.||+++++++|.+.|.+++| ++++.+.+++||+|+||+++++|+.
T Consensus        84 ~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~v~sa~~L~~~~~~~l~~~L~~~~~-~~~v~l~~~vD~~ligGi~i~~g~~  162 (184)
T CHL00119         84 VDRGRIALLDAIIEKYLELVYKLASIKIAEVSTAVPLSSAQEEALIEKLKEMTN-AKEIKLVITVDPSLIGGFLIKIGSK  162 (184)
T ss_pred             HHcCcHHHHHHHHHHHHHHHHHhcCeEEEEEEeccCCCHHHHHHHHHHHHHHhC-CCeEEEEeeeChHHhCcEEEEECCE
Confidence            999999999999999999999999999999999999999999999999999982 4799999999999999999999999


Q ss_pred             chhhhhhccchhhhhhhhhc
Q psy4192         168 APLKLARSFSTSQISQQLVK  187 (317)
Q Consensus       168 viD~svr~~~~~~~~~~~~~  187 (317)
                      +||+|+++ .++++++.|.+
T Consensus       163 ~~D~Si~~-~L~~l~~~l~~  181 (184)
T CHL00119        163 VIDTSIKG-QLKQLASHLDT  181 (184)
T ss_pred             EEeHhHHH-HHHHHHHHHHH
Confidence            99999998 88888888764

>PRK08474 F0F1 ATP synthase subunit delta; Validated

Probab=99.97  E-value=7.2e-31  Score=228.07  Aligned_cols=149  Identities=24%  Similarity=0.242  Sum_probs=140.2

Q ss_pred             hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------HHHHHHHHHHhccCCCCHHHHHHHHHHHHc
Q psy4192          29 GTDGRYATALYSAATKLKQLDGVEKELISFQK------------------SLKIEALKIVGQKKNFSAASINLLALLAEN   90 (317)
Q Consensus        29 ~va~~YA~AL~~~a~e~~~~~~v~~~l~~l~~------------------~~K~~ll~~~~~~~~~~~~~~nfL~vl~e~   90 (317)
                      .++++||+|||++|. .+.++.|.++|..+..                  ++|.+++..+++  +.++.+.|||++|++|
T Consensus         4 ~va~~YA~ALf~~a~-~~~l~~v~~~l~~l~~~~~~~~l~~~l~~P~i~~~~K~~vi~~~~~--~~~~~~~nFL~vLi~n   80 (176)
T PRK08474          4 LIAKRYAKALLSSLS-SDELNDIYSNLKILSSAFADEKFKEIISSPEISKEQKIEFLLSFVD--NANAKFQNFIKLLAEN   80 (176)
T ss_pred             hhHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHCChhHHHHHhCCCCCHHHHHHHHHHHHh--ccCHHHHHHHHHHHHC
Confidence            689999999999985 6899999999998776                  889999999997  4689999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEeccCCcchh
Q psy4192          91 GKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNALTTAPL  170 (317)
Q Consensus        91 ~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~vg~~viD  170 (317)
                      ||+.+|++|+..|..++++++|+..|+|+||.|||++|+++|.+.+++++  |+++.+++.+||  |||++|++||++||
T Consensus        81 ~R~~~L~~I~~~f~~~~~~~~~~~~~~V~SA~~Ls~~q~~~i~~~l~~~~--g~~v~l~~~vD~--IGG~ii~igd~v~D  156 (176)
T PRK08474         81 KRLELIPAIAKELERQIALKENEYVGVVYSNEKLSEETLKKLEEKLSKKF--NAKIKLKQKKSD--YDGIKVEVDDLGVE  156 (176)
T ss_pred             ChHHHHHHHHHHHHHHHHHHcCeEEEEEEECccCCHHHHHHHHHHHHHHh--CCeEEEEEEEcC--CCCEEEEECCEEEE
Confidence            99999999999999999999999999999999999999999999999999  899999999999  99999999999999


Q ss_pred             hhhhccchhhhhhhhhc
Q psy4192         171 KLARSFSTSQISQQLVK  187 (317)
Q Consensus       171 ~svr~~~~~~~~~~~~~  187 (317)
                      +   |.++..++.++.+
T Consensus       157 ~---s~~l~~~~~~~~~  170 (176)
T PRK08474        157 V---SFSKDRLKNQLIE  170 (176)
T ss_pred             e---eeeHHHHHHHHHH
Confidence            9   5678898888754

>PRK13429 F0F1 ATP synthase subunit delta; Provisional

Probab=99.97  E-value=2.2e-30  Score=226.07  Aligned_cols=155  Identities=26%  Similarity=0.357  Sum_probs=148.0

Q ss_pred             hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------------------HHHHHHHHHHhccCCCCHHHHHHHHHHHH
Q psy4192          29 GTDGRYATALYSAATKLKQLDGVEKELISFQK-------------------SLKIEALKIVGQKKNFSAASINLLALLAE   89 (317)
Q Consensus        29 ~va~~YA~AL~~~a~e~~~~~~v~~~l~~l~~-------------------~~K~~ll~~~~~~~~~~~~~~nfL~vl~e   89 (317)
                      .++++||+|||++|.+.++++.|+++|..+.+                   ++|.+++++++++.++++.+.|||++|++
T Consensus         5 ~ia~~YA~AL~~~a~~~~~l~~~~~~l~~i~~~~~~~~~~~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~~   84 (181)
T PRK13429          5 AIARRYAKALFQLAKEKGQLDSVYEELKQLAELLEDSPELRDALSNPVLSAEEKKAVLEKLLGKLKVSPEVLNFLKLLAD   84 (181)
T ss_pred             hhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            68999999999999999999999999999887                   88999999999843599999999999999


Q ss_pred             cCCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEeccCCcch
Q psy4192          90 NGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNALTTAP  169 (317)
Q Consensus        90 ~~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~vg~~vi  169 (317)
                      ++|+.++++|+..|.++++++.|+..++|+||.||+++++++|.+.|++++  |+++.+.++|||+||||+++++|+.+|
T Consensus        85 ~~r~~~l~~I~~~f~~~~~~~~~~~~~~v~sa~~ls~~~~~~l~~~L~~~~--~~~~~~~~~vd~sligG~~i~~~~~~i  162 (181)
T PRK13429         85 RRRLGILPEIAARYLELADEQKGIVRATVTSAVPLSEAQQEAIRQKLEKMT--GKKVELDTAVDPSLIGGVVVKIGDKVL  162 (181)
T ss_pred             CCcHHHHHHHHHHHHHHHHHhCCEEEEEEEEeecCCHHHHHHHHHHHHHHH--CCEEEEEeeeChhhhCceEEEECCEEE
Confidence            999999999999999999999999999999999999999999999999999  899999999999999999999999999


Q ss_pred             hhhhhccchhhhhhhhh
Q psy4192         170 LKLARSFSTSQISQQLV  186 (317)
Q Consensus       170 D~svr~~~~~~~~~~~~  186 (317)
                      |+|+++ .+++++++|.
T Consensus       163 D~Si~~-~L~~l~~~l~  178 (181)
T PRK13429        163 DASVRT-QLRRLKETLK  178 (181)
T ss_pred             ehhHHH-HHHHHHHHHh
Confidence            999998 8888888774

>PF00213 OSCP: ATP synthase delta (OSCP) subunit; InterPro: IPR000711 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.97  E-value=4.9e-34  Score=246.95  Aligned_cols=152  Identities=30%  Similarity=0.398  Sum_probs=110.8

Q ss_pred             hhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------------------HHHHHHHHHHhccCCCCHHHHHHHHHHHHc
Q psy4192          30 TDGRYATALYSAATKLKQLDGVEKELISFQK-------------------SLKIEALKIVGQKKNFSAASINLLALLAEN   90 (317)
Q Consensus        30 va~~YA~AL~~~a~e~~~~~~v~~~l~~l~~-------------------~~K~~ll~~~~~~~~~~~~~~nfL~vl~e~   90 (317)
                      ||++||+|||+.|.+.|.++.|.++|+.+..                   ++|.++++++|+ +++++.+.|||++|+++
T Consensus         1 ia~~YA~AL~~~a~e~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~-~~~~~~~~nfL~~l~~~   79 (172)
T PF00213_consen    1 IAKRYAKALFELAKEEGKLDEVLEELQSLLEILKSNPELRKFLESPFIPKEEKKELLDEIFK-GKLSEETVNFLKLLIDN   79 (172)
T ss_dssp             HHHCHHHHHHHHCCCCTTHHHHHHHHHHH-HHHCCSCCCHHHHT-TTTTCCCCCCCCCHHCT-TT-SCCCCHHHHHHCCT
T ss_pred             CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCHHHHHHHcCccccHHHHHHHHHHHHc-ccCCHHHHHHHHHHHhc
Confidence            6899999999999999999999999999965                   678999999997 37999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCC-eEEEEEEecCCCcCCcEeccCCcch
Q psy4192          91 GKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGE-NILLTTKVDPSIIGDPKSNALTTAP  169 (317)
Q Consensus        91 ~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~-~i~l~~~vDpsLIGG~~I~vg~~vi  169 (317)
                      ||++++++|+.+|.++++.+.|+..|+|+||.||+++|+++|++.+++++  |+ ++.++++|||+||||++|++||++|
T Consensus        80 ~r~~~l~~i~~~~~~~~~~~~~~~~~~V~sA~~l~~~q~~~l~~~l~~~~--~~~~v~~~~~vD~sLigG~~i~~~~~~i  157 (172)
T PF00213_consen   80 NRLSLLPEILEEFEELVNEHNGIVEATVTSAFPLSEEQKKKLEKKLKKKY--GKKKVELNYKVDPSLIGGFIIEVGDKVI  157 (172)
T ss_dssp             T-CCCHHHHHHHHHHHHHHHCCTS-B-SSS-B----SSSTTTTTTCCCTT--TT-------------------------T
T ss_pred             CCcccHHHHHHHHHHHHHHHcCeEEEEEEEecCCCHHHHHHHHHHHHHHH--CCCeeeEEEEEccccCcEEEEEECCEEE
Confidence            99999999999999999999999999999999999999999999999999  56 9999999999999999999999999


Q ss_pred             hhhhhccchhhhhhhh
Q psy4192         170 LKLARSFSTSQISQQL  185 (317)
Q Consensus       170 D~svr~~~~~~~~~~~  185 (317)
                      |+|+++ .+.+++.+|
T Consensus       158 D~Sv~~-~L~~l~~~L  172 (172)
T PF00213_consen  158 DASVKS-RLEQLKKEL  172 (172)
T ss_dssp             TTTTTT-TTTTT-TTT
T ss_pred             ehhHHH-HHHHHHhcC
Confidence            999999 888888765

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta in bacterial and chloroplast ATPase, or OSCP (oligomycin sensitivity conferral protein) in mitochondrial ATPase (note that in mitochondria there is a different delta subunit, IPR001469 from INTERPRO). The OSCP/delta subunit appears to be part of the peripheral stalk that holds the F1 complex alpha3beta3 catalytic core stationary against the torque of the rotating central stalk, and links subunit A of the F0 complex with the F1 complex. In mitochondria, the peripheral stalk consists of OSCP, as well as F0 components F6, B and D. In bacteria and chloroplasts the peripheral stalks have different subunit compositions: delta and two copies of F0 component B (bacteria), or delta and F0 components B and B' (chloroplasts) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport; PDB: 2A7U_B 1ABV_A 2WSS_S 2BO5_A 2JMX_A.

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=99.97  E-value=3.2e-30  Score=253.04  Aligned_cols=161  Identities=19%  Similarity=0.218  Sum_probs=153.1

Q ss_pred             CCchhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------------------HHHHHHHHHHhccC-CCCHHHHH
Q psy4192          23 APVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQK-------------------SLKIEALKIVGQKK-NFSAASIN   82 (317)
Q Consensus        23 ~~~~~~~va~~YA~AL~~~a~e~~~~~~v~~~l~~l~~-------------------~~K~~ll~~~~~~~-~~~~~~~n   82 (317)
                      |-=...++.+.|++|||++|.+.|.++.|+++|..+..                   ++|.+++..+|++. ++++.+.|
T Consensus       264 ~~dl~~~~~~~~~~AL~~~A~e~~~l~~v~~eL~~~~~~l~~~~el~~~L~~p~i~~~~K~~ll~~l~~~~~~~~~~~~n  343 (445)
T PRK13428        264 NSDLIDALEHVARLALLERAERAGQVDEVEDQLFRFSRILDAQPRLAILLSDYTVPADGRVALLRKVLGGASTVNPVTVA  343 (445)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCHHHHHHHhCCCCCHHHHHHHHHHHHhccccCCHHHHH
Confidence            33456789999999999999999999999999999988                   88999999999731 69999999


Q ss_pred             HHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEe
Q psy4192          83 LLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKS  162 (317)
Q Consensus        83 fL~vl~e~~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I  162 (317)
                      ||.++++++|+..+++|+..|.+++++++|+..|+|+||.|||++|+++|.+.|+++|  |++|.++++|||+||||++|
T Consensus       344 fl~~lv~~~R~~~l~~i~~~~~~l~~~~~g~~~a~VtsA~pLs~~q~~~L~~~L~k~~--g~~V~l~~~VDpsLiGGivI  421 (445)
T PRK13428        344 LLSQTVELLRGQPAEEAVLFLAELAVARRGEVVAQVSAAAELSDAQRTRLTEVLSRIY--GRPVSVQLHIDPELLGGLSI  421 (445)
T ss_pred             HHHHHHHCCchhhHHHHHHHHHHHHHHHCCeeEEEEEeecCCCHHHHHHHHHHHHHHH--CCceEEEeeeCchhhCceEE
Confidence            9999999999999999999999999999999999999999999999999999999999  89999999999999999999


Q ss_pred             ccCCcchhhhhhccchhhhhhhhh
Q psy4192         163 NALTTAPLKLARSFSTSQISQQLV  186 (317)
Q Consensus       163 ~vg~~viD~svr~~~~~~~~~~~~  186 (317)
                      ++||.+||+||++ .+.+++++|+
T Consensus       422 ~vGd~viD~Sv~~-rL~~l~~~l~  444 (445)
T PRK13428        422 AVGDEVIDGTLSS-RLAAAEAQLP  444 (445)
T ss_pred             EECCEEeehhHHH-HHHHHHhhCC
Confidence            9999999999999 9999999886

>PRK05758 F0F1 ATP synthase subunit delta; Validated

Probab=99.96  E-value=2.9e-29  Score=218.25  Aligned_cols=153  Identities=27%  Similarity=0.336  Sum_probs=144.9

Q ss_pred             hhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------------------HHHHHHHHHHhccCCCCHHHHHHHHHHH
Q psy4192          28 FGTDGRYATALYSAATKLKQLDGVEKELISFQK-------------------SLKIEALKIVGQKKNFSAASINLLALLA   88 (317)
Q Consensus        28 ~~va~~YA~AL~~~a~e~~~~~~v~~~l~~l~~-------------------~~K~~ll~~~~~~~~~~~~~~nfL~vl~   88 (317)
                      ..++++||+|||++|.+.+.++.|+++|.. .+                   ++|.++++++|+  +.++.+.|||.+|+
T Consensus         5 ~~~a~~YA~AL~~~a~~~~~~~~v~~~l~~-~~~~~~~~~~~~~l~~p~i~~~~K~~~l~~~~~--~~~~~~~nfL~~l~   81 (177)
T PRK05758          5 STVARPYAKALFEVALEKGSLDAWSEELTF-LAEVAENEDLAALLSSPLVSAEQKKKLLAAVFK--SLSEYVQNFLKVLA   81 (177)
T ss_pred             hhhHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHhcCHHHHHHHhCCCCCHHHHHHHHHHHHc--cCCHHHHHHHHHHH
Confidence            578999999999999999999999999988 54                   889999999997  34999999999999


Q ss_pred             HcCCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEeccCCcc
Q psy4192          89 ENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNALTTA  168 (317)
Q Consensus        89 e~~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~vg~~v  168 (317)
                      ++||+.++++|+.+|.+++++..|+..++|+||.||+++++++|.+.+++.+  |+++.+.+++||+|+||+++++|+++
T Consensus        82 ~~~r~~~l~~i~~~~~~~~~~~~~~~~~~v~sa~~l~~~~~~~i~~~l~~~~--~~~v~l~~~vd~~ligG~~i~~~~~~  159 (177)
T PRK05758         82 ENGRLALLPEILEQFEALRAEHENIVDAEVTSAFPLSEEQLDKLKAALEKRL--GRKVKLNEKVDPSLIGGVIIKVGDRV  159 (177)
T ss_pred             HCCcHHHHHHHHHHHHHHHHHHcCEEEEEEEEccCCCHHHHHHHHHHHHHHH--CCeeEEEeeEChHHhCceEEEECCEE
Confidence            9999999999999999999999999999999999999999999999999999  78899999999999999999999999


Q ss_pred             hhhhhhccchhhhhhhhh
Q psy4192         169 PLKLARSFSTSQISQQLV  186 (317)
Q Consensus       169 iD~svr~~~~~~~~~~~~  186 (317)
                      +|+|+++ .++++++.+.
T Consensus       160 ~d~Si~~-~L~~l~~~l~  176 (177)
T PRK05758        160 IDGSVRG-KLERLKDALK  176 (177)
T ss_pred             eehhHHH-HHHHHHHHhc
Confidence            9999998 8888888764

>KOG1662|consensus

Probab=99.94  E-value=7.3e-27  Score=199.51  Aligned_cols=136  Identities=43%  Similarity=0.668  Sum_probs=131.1

Q ss_pred             hhhhhhh-hccCcccccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhCCHHHHHhhhCCCCCHHHHHHHHHHHhhc
Q psy4192         179 SQISQQL-VKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQK  257 (317)
Q Consensus       179 ~~~~~~~-~~~~~~~~~ia~~YA~AL~~~A~e~~~l~~v~~~L~~l~~v~~~~~~l~~~L~~p~i~~~~K~~ll~~v~~~  257 (317)
                      .++..++ ++||+|..+++++||.|||..|..++++|.++.+|..+.++++.+|+|.+|+.||.++.+.|...|+++++.
T Consensus        16 ~~aaaq~tv~pPVql~G~eG~YAtaLY~AA~K~~~ld~vetdL~kl~~v~k~~pk~~~f~~nP~l~~~~k~~~i~di~~~   95 (210)
T KOG1662|consen   16 ARAAAQLTVKPPVQLYGLEGRYATALYSAAVKNSKLDQVETDLNKLEQVLKTDPKFAQFVLNPTLTREKKKTAIDDIVEK   95 (210)
T ss_pred             HHHHHhCCCCCCeEEecccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcChHHHHHhcCCccchHHHHHHHHHHHHH
Confidence            4556666 999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCceeEEEEeeccCCCCCCC
Q psy4192         258 KNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLTGHPS  314 (317)
Q Consensus       258 ~~~~~~~~nfL~lL~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~SA~~Ls~~q~~  314 (317)
                      .++++.+.|||.+|+||||+..+.+|+.+|..+++.|+|++.|+||||.||++.+++
T Consensus        96 ~~~~~~t~NflnlLaeNgRL~~l~~Ivk~F~~lm~ahrGev~~~VtSa~pLd~~~~k  152 (210)
T KOG1662|consen   96 LKLAPLTKNFLNLLAENGRLNNLTEIVKAFETLMNAHRGEVKVEVTSAEPLDAKQLK  152 (210)
T ss_pred             hcccHhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHhCCceEEEEEecccCChHHHH
Confidence            899999999999999999999999999999999999999999999999999998875

>PRK13436 F0F1 ATP synthase subunit delta; Provisional

Probab=99.92  E-value=3.6e-25  Score=192.81  Aligned_cols=123  Identities=17%  Similarity=0.157  Sum_probs=118.5

Q ss_pred             cccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhCCHHHHHhhhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy4192         192 VFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALL  271 (317)
Q Consensus       192 ~~~ia~~YA~AL~~~A~e~~~l~~v~~~L~~l~~v~~~~~~l~~~L~~p~i~~~~K~~ll~~v~~~~~~~~~~~nfL~lL  271 (317)
                      .+.+|+|||+|||+.|.+.+.+++|.++|..+.+++.++|+|+.+|.||.++.++|.++++.+|++ ++++.+.|||++|
T Consensus         4 ~~~va~~YA~AL~~~a~e~~~l~~v~~~l~~~~~~~~~~~~l~~~l~~P~i~~~~K~~~l~~l~~~-~~~~~~~nfl~ll   82 (179)
T PRK13436          4 KNKNIYNYAEALFDIANEENNVEKYINEVFKIIEILKNNKDLIKLLTSYFIDKEEKFKIIDKIFSA-KIDIYLVNFLKIL   82 (179)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcChHHHHHHcCCCCCHHHHHHHHHHHHhc-cCCHHHHHHHHHH
Confidence            357899999999999999999999999999999999999999999999999999999999999985 8999999999999


Q ss_pred             HHcCCcccHHHHHHHHHHHHHHHcCceeEEEEeeccCCCCCCCC
Q psy4192         272 AENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLTGHPSN  315 (317)
Q Consensus       272 ~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~SA~~Ls~~q~~~  315 (317)
                      ++++|+..+++|+++|..++++++|+..|+|+||.|||++|++.
T Consensus        83 ~~~~R~~~l~~I~~~f~~~~~~~~~~~~~~V~sA~~Ls~~~~~~  126 (179)
T PRK13436         83 AKNNLFIYIKQILKKFVKLSNEKLNITYGEIYTTEPLSEVQISR  126 (179)
T ss_pred             HHCChHHHHHHHHHHHHHHHHHHcCeEEEEEEecCCCCHHHHHH
Confidence            99999999999999999999999999999999999999998754

>COG0712 AtpH F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]

Probab=99.91  E-value=2.3e-24  Score=187.03  Aligned_cols=124  Identities=27%  Similarity=0.323  Sum_probs=118.5

Q ss_pred             cccccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhCCHHHHHhhhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHH
Q psy4192         190 VQVFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLA  269 (317)
Q Consensus       190 ~~~~~ia~~YA~AL~~~A~e~~~l~~v~~~L~~l~~v~~~~~~l~~~L~~p~i~~~~K~~ll~~v~~~~~~~~~~~nfL~  269 (317)
                      +..+++|+|||+|||+.|.|++++++|.++|..+.++++++|+|+.+|.||.++.++|.+++.++|++ ..++.+.|||.
T Consensus         2 ~~~~~va~~YA~ALf~~A~e~~~~~~~~~~L~~~~~i~~~~~~l~~ll~sp~~~~~~k~~li~~i~~~-~~~~~~~nfL~   80 (178)
T COG0712           2 SELSTVARRYAKALFELAEEKGQLEEVEEELTFLAEILKNSPKLKQLLSSPAVSAEDKKELLISIFKK-IGDPLLQNFLR   80 (178)
T ss_pred             chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCHhHHHHhcCcCCCHHHHHHHHHHHHhc-cCcHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999984 44499999999


Q ss_pred             HHHHcCCcccHHHHHHHHHHHHHHHcCceeEEEEeeccCCCCCCC
Q psy4192         270 LLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLTGHPS  314 (317)
Q Consensus       270 lL~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~SA~~Ls~~q~~  314 (317)
                      +|++|+|+.++++|+..|..++++++|++.|+||||.|||++|++
T Consensus        81 ll~en~Rl~~l~~I~~~~~~l~~~~~~~~~a~V~SA~~Ls~~q~~  125 (178)
T COG0712          81 LLAENKRLNLLPEILEEFLKLAAESRGIVEAEVTSAFELSDEQLT  125 (178)
T ss_pred             HHHHccchhhHHHHHHHHHHHHHHhcCceEEEEEEcCCCCHHHHH
Confidence            999999999999999999999999999999999999999999875

>PRK13434 F0F1 ATP synthase subunit delta; Provisional

Probab=99.91  E-value=9.3e-24  Score=184.76  Aligned_cols=120  Identities=23%  Similarity=0.344  Sum_probs=114.1

Q ss_pred             cccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhCCHHHHHhhhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy4192         192 VFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALL  271 (317)
Q Consensus       192 ~~~ia~~YA~AL~~~A~e~~~l~~v~~~L~~l~~v~~~~~~l~~~L~~p~i~~~~K~~ll~~v~~~~~~~~~~~nfL~lL  271 (317)
                      .+++|+|||+|||+   +.+.+++|.++|..+.+++.++|+|+.+|.||.++.++|.+++.++|++ ++++.+.|||++|
T Consensus         3 ~~~va~rYA~AL~~---~~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~P~i~~~~K~~~l~~~~~~-~~~~~~~nfl~lL   78 (184)
T PRK13434          3 DSGVSKVYASALLG---AANSPEEVEQELGDLVQLLFKDEKIRNFFLSPTVSPEEKEQTLAKNLRG-KISDITLNFLGVL   78 (184)
T ss_pred             chhhHHHHHHHHHH---hcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHHc-cCCHHHHHHHHHH
Confidence            46899999999999   5689999999999999999999999999999999999999999999974 8999999999999


Q ss_pred             HHcCCcccHHHHHHHHHHHHHHHcCceeEEEEeeccCCCCCCCC
Q psy4192         272 AENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLTGHPSN  315 (317)
Q Consensus       272 ~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~SA~~Ls~~q~~~  315 (317)
                      ++|+|+..+++|+++|.+++++++|++.|+|+||.|||++|++.
T Consensus        79 ~e~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~sA~~Ls~~q~~~  122 (184)
T PRK13434         79 LNKGRFIYLPEIQKDFTVELDKKKGRVRAQIVSYPSLEPAQVDK  122 (184)
T ss_pred             HHCCcHHHHHHHHHHHHHHHHHHcCeEEEEEEEcCCCCHHHHHH
Confidence            99999999999999999999999999999999999999988653

>CHL00119 atpD ATP synthase CF1 delta subunit; Validated

Probab=99.91  E-value=9.1e-24  Score=184.81  Aligned_cols=124  Identities=19%  Similarity=0.254  Sum_probs=119.2

Q ss_pred             cccccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhCCHHHHHhhhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHH
Q psy4192         190 VQVFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLA  269 (317)
Q Consensus       190 ~~~~~ia~~YA~AL~~~A~e~~~l~~v~~~L~~l~~v~~~~~~l~~~L~~p~i~~~~K~~ll~~v~~~~~~~~~~~nfL~  269 (317)
                      +..+.+|++||+|||++|.+.+.+++|.++|..+.+++.++|+|+++|.||.++.++|.++++.+|++ ++++.+.|||+
T Consensus         3 ~~~~~va~~YA~AL~~~a~e~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~p~i~~~~K~~ii~~~~~~-~~~~~~~nfl~   81 (184)
T CHL00119          3 PLVSKIAQPYAEALLEFAKEKNIMEQITADIQLILTFLNESPELKKFLANPLISKNAKKEVIKKTFGS-QINENTLKFLM   81 (184)
T ss_pred             chHhHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHHh-ccCHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999984 79999999999


Q ss_pred             HHHHcCCcccHHHHHHHHHHHHHHHcCceeEEEEeeccCCCCCCC
Q psy4192         270 LLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLTGHPS  314 (317)
Q Consensus       270 lL~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~SA~~Ls~~q~~  314 (317)
                      +|++|+|+..+++|+.+|.+++++++|+..++|+||+||++++++
T Consensus        82 ~L~~~~r~~~l~~I~~~f~~~~~~~~~~~~~~v~sa~~L~~~~~~  126 (184)
T CHL00119         82 VLVDRGRIALLDAIIEKYLELVYKLASIKIAEVSTAVPLSSAQEE  126 (184)
T ss_pred             HHHHcCcHHHHHHHHHHHHHHHHHhcCeEEEEEEeccCCCHHHHH
Confidence            999999999999999999999999999999999999999998764

>PRK08474 F0F1 ATP synthase subunit delta; Validated

Probab=99.90  E-value=1.1e-23  Score=182.90  Aligned_cols=118  Identities=25%  Similarity=0.282  Sum_probs=112.0

Q ss_pred             ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhCCHHHHHhhhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy4192         193 FGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLA  272 (317)
Q Consensus       193 ~~ia~~YA~AL~~~A~e~~~l~~v~~~L~~l~~v~~~~~~l~~~L~~p~i~~~~K~~ll~~v~~~~~~~~~~~nfL~lL~  272 (317)
                      ..+|+|||+|||++|. ++.+++|.++|..+..+++ +|+|+++|.||.++.++|.++++.+|+  +.++.+.|||++|+
T Consensus         3 ~~va~~YA~ALf~~a~-~~~l~~v~~~l~~l~~~~~-~~~l~~~l~~P~i~~~~K~~vi~~~~~--~~~~~~~nFL~vLi   78 (176)
T PRK08474          3 ELIAKRYAKALLSSLS-SDELNDIYSNLKILSSAFA-DEKFKEIISSPEISKEQKIEFLLSFVD--NANAKFQNFIKLLA   78 (176)
T ss_pred             hhhHHHHHHHHHHHHh-cCcHHHHHHHHHHHHHHHC-ChhHHHHHhCCCCCHHHHHHHHHHHHh--ccCHHHHHHHHHHH
Confidence            3689999999999985 6899999999999999995 799999999999999999999999997  46899999999999


Q ss_pred             HcCCcccHHHHHHHHHHHHHHHcCceeEEEEeeccCCCCCCC
Q psy4192         273 ENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLTGHPS  314 (317)
Q Consensus       273 ~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~SA~~Ls~~q~~  314 (317)
                      +|+|+..|++|+.+|..++++.+|++.|+|+||.|||++|++
T Consensus        79 ~n~R~~~L~~I~~~f~~~~~~~~~~~~~~V~SA~~Ls~~q~~  120 (176)
T PRK08474         79 ENKRLELIPAIAKELERQIALKENEYVGVVYSNEKLSEETLK  120 (176)
T ss_pred             HCChHHHHHHHHHHHHHHHHHHcCeEEEEEEECccCCHHHHH
Confidence            999999999999999999999999999999999999998865

>TIGR01145 ATP_synt_delta ATP synthase, F1 delta subunit

Probab=99.90  E-value=2.6e-23  Score=180.07  Aligned_cols=119  Identities=27%  Similarity=0.387  Sum_probs=115.3

Q ss_pred             chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhCCHHHHHhhhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHc
Q psy4192         195 TDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAEN  274 (317)
Q Consensus       195 ia~~YA~AL~~~A~e~~~l~~v~~~L~~l~~v~~~~~~l~~~L~~p~i~~~~K~~ll~~v~~~~~~~~~~~nfL~lL~~~  274 (317)
                      ++++||+|||+.|.+++++++|.++|..+..+++++|+|+++|.||.++.++|.++++++|++ ++++.+.|||++|+++
T Consensus         1 va~~YA~AL~~~a~e~~~l~~v~~~l~~i~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~l~~~-~~~~~~~nfl~~l~~~   79 (172)
T TIGR01145         1 VARPYAKALFEIANEKSSLEEWGEMLNFVKEVLKNNKELKKFLSNPLISAEKKKEFIKNVFGE-QLDESSLNLLLLLAEN   79 (172)
T ss_pred             CChhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhCCHHHHHHHhCCCCCHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHC
Confidence            579999999999999999999999999999999999999999999999999999999999984 8999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHHHcCceeEEEEeeccCCCCCCC
Q psy4192         275 GKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLTGHPS  314 (317)
Q Consensus       275 ~R~~~l~~I~~~f~~l~~~~~~~~~~~V~SA~~Ls~~q~~  314 (317)
                      +|+..+++|+.+|..+++++.|++.++|+||.||++++++
T Consensus        80 ~r~~~l~~I~~~~~~~~~~~~~~~~~~v~sa~~L~~~~~~  119 (172)
T TIGR01145        80 GRLAALPDILDQFLKLSYEAQQTADVEVISAKPLTEDQQA  119 (172)
T ss_pred             CcHHHHHHHHHHHHHHHHHhcCEEEEEEEEccCCCHHHHH
Confidence            9999999999999999999999999999999999998764

This model describes the ATP synthase delta subunit in bacteria, mitochondria, and chloroplasts. It is sometimes called OSCP for Oligomycin Sensitivity Conferring Protein. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Delta subunit belongs to the F1 cluster or sector and functionally implicated in the overall stability of the complex. Expression of truncated forms of this subunit results in low ATPase activity.

>PRK13431 F0F1 ATP synthase subunit delta; Provisional

Probab=99.89  E-value=2.3e-22  Score=174.13  Aligned_cols=150  Identities=12%  Similarity=0.122  Sum_probs=134.9

Q ss_pred             hhhhHHHHHHHHHHHHhc-CCHHHHHHHHHHHHH----------------HHHHHHHHHHhc---cCCCCHHHHHHHHHH
Q psy4192          28 FGTDGRYATALYSAATKL-KQLDGVEKELISFQK----------------SLKIEALKIVGQ---KKNFSAASINLLALL   87 (317)
Q Consensus        28 ~~va~~YA~AL~~~a~e~-~~~~~v~~~l~~l~~----------------~~K~~ll~~~~~---~~~~~~~~~nfL~vl   87 (317)
                      ..||+|||+|||++|.+. +.++.++++|..+..                ++|.+++.++++   ++..++.+.|||++|
T Consensus         5 g~IAkRYAkAL~~~a~e~~~~le~v~~~L~~L~~~f~~~el~~il~~P~~~~Kkk~l~~l~~~a~~~~~~~~~~NFl~LL   84 (180)
T PRK13431          5 KVISKHYAKALKNHTKGDLALLEEIVVGLKNVAEAIKLHKLNQVLAHVSLKVKKEVVFEILEKITSIKACSVLKPVMEVV   84 (180)
T ss_pred             chhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccHHHHHHHhCccHHHHHHHHHHHHhhhccccccHHHHHHHHHH
Confidence            359999999999999999 999999999999988                788888888886   136899999999999


Q ss_pred             HHcCCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEeccCCc
Q psy4192          88 AENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNALTT  167 (317)
Q Consensus        88 ~e~~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~vg~~  167 (317)
                      ++|+|+.+||+|+.+   ++++..|+..|+|+||.||+++++++|.+.|++++  |+++.+.+.+++  .-|++|.++|.
T Consensus        85 ~en~Rl~~LpeIa~~---L~~~~~~i~~~~V~SA~~Ls~~~~~~I~~~L~kk~--g~kV~L~~~~~~--~~gik~~v~~l  157 (180)
T PRK13431         85 LKNNRLDMLELITEE---LSFDSKRTLEATLLVPEKLENNELEAVQQKLQARF--NAPVEIAQDTWS--KKGVSLSVSSL  157 (180)
T ss_pred             HHcChHHHHHHHHHH---HHHHHcCeEEEEEEecccCCHHHHHHHHHHHHHHH--CCeEEEEeeccC--CCceEEEEecC
Confidence            999999999999994   99999999999999999999999999999999999  889999999988  88999999997


Q ss_pred             chhhhhhccchhhhhhhhhc
Q psy4192         168 APLKLARSFSTSQISQQLVK  187 (317)
Q Consensus       168 viD~svr~~~~~~~~~~~~~  187 (317)
                      -+   .-|||-+.+..+..+
T Consensus       158 g~---ei~fs~~~~~~~~~~  174 (180)
T PRK13431        158 DL---EIGFSKEDILKKIEK  174 (180)
T ss_pred             ce---EEEeeHHHHHHHHHH
Confidence            76   567887666655544

>PRK13429 F0F1 ATP synthase subunit delta; Provisional

Probab=99.89  E-value=1.4e-22  Score=176.91  Aligned_cols=122  Identities=23%  Similarity=0.303  Sum_probs=117.2

Q ss_pred             ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhCCHHHHHhhhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q psy4192         193 FGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLA  272 (317)
Q Consensus       193 ~~ia~~YA~AL~~~A~e~~~l~~v~~~L~~l~~v~~~~~~l~~~L~~p~i~~~~K~~ll~~v~~~~~~~~~~~nfL~lL~  272 (317)
                      ..++++||+|||++|.+++++++|.++|..+..+++++|+|+.+|.||.++.++|.++++++|++.++++.+.|||++|+
T Consensus         4 ~~ia~~YA~AL~~~a~~~~~l~~~~~~l~~i~~~~~~~~~~~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~nfl~~l~   83 (181)
T PRK13429          4 NAIARRYAKALFQLAKEKGQLDSVYEELKQLAELLEDSPELRDALSNPVLSAEEKKAVLEKLLGKLKVSPEVLNFLKLLA   83 (181)
T ss_pred             chhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999985459999999999999


Q ss_pred             HcCCcccHHHHHHHHHHHHHHHcCceeEEEEeeccCCCCCCC
Q psy4192         273 ENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLTGHPS  314 (317)
Q Consensus       273 ~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~SA~~Ls~~q~~  314 (317)
                      +++|+..+++|+..|.++++++.|+..|+|+||.||++++.+
T Consensus        84 ~~~r~~~l~~I~~~f~~~~~~~~~~~~~~v~sa~~ls~~~~~  125 (181)
T PRK13429         84 DRRRLGILPEIAARYLELADEQKGIVRATVTSAVPLSEAQQE  125 (181)
T ss_pred             HCCcHHHHHHHHHHHHHHHHHhCCEEEEEEEEeecCCHHHHH
Confidence            999999999999999999999999999999999999998754

>PRK13441 F0F1 ATP synthase subunit delta; Provisional

Probab=99.88  E-value=3.9e-22  Score=173.92  Aligned_cols=121  Identities=19%  Similarity=0.196  Sum_probs=113.0

Q ss_pred             cccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhCCHHHHHhhhCCCCCHHHHHHHHHHHhh--cCCCCHHHHHHHH
Q psy4192         192 VFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQ--KKNFSAASINLLA  269 (317)
Q Consensus       192 ~~~ia~~YA~AL~~~A~e~~~l~~v~~~L~~l~~v~~~~~~l~~~L~~p~i~~~~K~~ll~~v~~--~~~~~~~~~nfL~  269 (317)
                      .+.+++|||+|||++|.+.+.+++|.++|..+.+++.+   ++++|.||.++.++|.++++.+|+  +.++++.+.|||+
T Consensus         3 ~~~va~~YA~AL~~~a~e~~~l~~v~~~l~~~~~~~~~---~~~~l~~p~i~~~~K~~~l~~~~~~~~~~~~~~~~nfl~   79 (180)
T PRK13441          3 YSAIASKYARALLNVAIELEKEEEYGEFLDLVCQIYES---AKEFFDNPIVKPEKKVSLIKEIMKEFGQEMDEFFENFLN   79 (180)
T ss_pred             cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---HHHHHhCCCCCHHHHHHHHHHHHHHhccccCHHHHHHHH
Confidence            46799999999999999999999999999999999974   578999999999999999999974  2358999999999


Q ss_pred             HHHHcCCcccHHHHHHHHHHHHHHHcCceeEEEEeeccCCCCCCCC
Q psy4192         270 LLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLTGHPSN  315 (317)
Q Consensus       270 lL~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~SA~~Ls~~q~~~  315 (317)
                      +|++|+|+..+++|+..|..++++++|++.|+|+||.||++++++.
T Consensus        80 vL~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~sA~~L~~~~~~~  125 (180)
T PRK13441         80 LVFENKRQKLLPQIRALFEYEKILSEQKVPVNLTTAHELSDEELKL  125 (180)
T ss_pred             HHHHCChHHHHHHHHHHHHHHHHHhcCeeEEEEEecccCCHHHHHH
Confidence            9999999999999999999999999999999999999999988653

>PRK05758 F0F1 ATP synthase subunit delta; Validated

Probab=99.86  E-value=2.1e-21  Score=168.83  Aligned_cols=120  Identities=23%  Similarity=0.277  Sum_probs=114.8

Q ss_pred             cccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhCCHHHHHhhhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy4192         192 VFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALL  271 (317)
Q Consensus       192 ~~~ia~~YA~AL~~~A~e~~~l~~v~~~L~~l~~v~~~~~~l~~~L~~p~i~~~~K~~ll~~v~~~~~~~~~~~nfL~lL  271 (317)
                      .+.++++||+|||+.|.+++.++.|.++|.. .+++.++|+|+.+|.||.++.++|..+|+++|++  .++.+.|||.+|
T Consensus         4 ~~~~a~~YA~AL~~~a~~~~~~~~v~~~l~~-~~~~~~~~~~~~~l~~p~i~~~~K~~~l~~~~~~--~~~~~~nfL~~l   80 (177)
T PRK05758          4 LSTVARPYAKALFEVALEKGSLDAWSEELTF-LAEVAENEDLAALLSSPLVSAEQKKKLLAAVFKS--LSEYVQNFLKVL   80 (177)
T ss_pred             chhhHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHHhcCHHHHHHHhCCCCCHHHHHHHHHHHHcc--CCHHHHHHHHHH
Confidence            4678999999999999999999999999999 9999999999999999999999999999999984  499999999999


Q ss_pred             HHcCCcccHHHHHHHHHHHHHHHcCceeEEEEeeccCCCCCCC
Q psy4192         272 AENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLTGHPS  314 (317)
Q Consensus       272 ~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~SA~~Ls~~q~~  314 (317)
                      ++++|+..+++|+.+|.++++++.|++.|+|+||.||++++.+
T Consensus        81 ~~~~r~~~l~~i~~~~~~~~~~~~~~~~~~v~sa~~l~~~~~~  123 (177)
T PRK05758         81 AENGRLALLPEILEQFEALRAEHENIVDAEVTSAFPLSEEQLD  123 (177)
T ss_pred             HHCCcHHHHHHHHHHHHHHHHHHcCEEEEEEEEccCCCHHHHH
Confidence            9999999999999999999999999999999999999998754

>PRK13431 F0F1 ATP synthase subunit delta; Provisional

Probab=99.86  E-value=2e-21  Score=168.24  Aligned_cols=118  Identities=11%  Similarity=0.130  Sum_probs=107.5

Q ss_pred             cccchhHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHhhCCHHHHHhhhCCCCCHHHHHHHHHHHhh---cCCCCHHHHHH
Q psy4192         192 VFGTDGRYATALYSAATKL-KQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQ---KKNFSAASINL  267 (317)
Q Consensus       192 ~~~ia~~YA~AL~~~A~e~-~~l~~v~~~L~~l~~v~~~~~~l~~~L~~p~i~~~~K~~ll~~v~~---~~~~~~~~~nf  267 (317)
                      +..||+|||+|||++|.++ +.+++++++|..+.++|.. ++|++++.||.+  ++|.+++.++|+   +..+++.+.||
T Consensus         4 ~g~IAkRYAkAL~~~a~e~~~~le~v~~~L~~L~~~f~~-~el~~il~~P~~--~~Kkk~l~~l~~~a~~~~~~~~~~NF   80 (180)
T PRK13431          4 LKVISKHYAKALKNHTKGDLALLEEIVVGLKNVAEAIKL-HKLNQVLAHVSL--KVKKEVVFEILEKITSIKACSVLKPV   80 (180)
T ss_pred             cchhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHcc-HHHHHHHhCccH--HHHHHHHHHHHhhhccccccHHHHHH
Confidence            4679999999999999999 9999999999999999986 799999999999  777777777775   12689999999


Q ss_pred             HHHHHHcCCcccHHHHHHHHHHHHHHHcCceeEEEEeeccCCCCCCCC
Q psy4192         268 LALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLTGHPSN  315 (317)
Q Consensus       268 L~lL~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~SA~~Ls~~q~~~  315 (317)
                      |++|++|+|+.+||+|+..   ++++++|++.|+|+||+|||+++++.
T Consensus        81 l~LL~en~Rl~~LpeIa~~---L~~~~~~i~~~~V~SA~~Ls~~~~~~  125 (180)
T PRK13431         81 MEVVLKNNRLDMLELITEE---LSFDSKRTLEATLLVPEKLENNELEA  125 (180)
T ss_pred             HHHHHHcChHHHHHHHHHH---HHHHHcCeEEEEEEecccCCHHHHHH
Confidence            9999999999999999994   99999999999999999999988754

>PRK13430 F0F1 ATP synthase subunit delta; Provisional

Probab=99.85  E-value=5.4e-21  Score=176.62  Aligned_cols=137  Identities=19%  Similarity=0.154  Sum_probs=131.2

Q ss_pred             hhhhhhhhhccCcccccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhCCHHHHHhhhCCCCCHHHHHHHHHHHhhc
Q psy4192         178 TSQISQQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQK  257 (317)
Q Consensus       178 ~~~~~~~~~~~~~~~~~ia~~YA~AL~~~A~e~~~l~~v~~~L~~l~~v~~~~~~l~~~L~~p~i~~~~K~~ll~~v~~~  257 (317)
                      ....+++...|+-...++..-+.+|||+.|.+.|++++|.++|+.+.+++.++|+|+.+|.||.++.++|.+++..+|++
T Consensus        82 ~~~v~~rWs~~~dl~~~~e~l~~~ALf~~A~e~g~ld~v~~eL~~~~~~l~~~~~l~~~L~~p~i~~e~K~~ll~~l~~~  161 (271)
T PRK13430         82 SDAVRQRWSRPRDLADALEELGVRALLASAEAQGALDDVEDELFRLGRILASNPELRLALSDRAAPAEAKRELLARLLYG  161 (271)
T ss_pred             HHHHHhhccCchhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcCHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence            36677899999999999999999999999999999999999999999999999999999999999999999999999984


Q ss_pred             CCCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCceeEEEEeeccCCCCCCCC
Q psy4192         258 KNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLTGHPSN  315 (317)
Q Consensus       258 ~~~~~~~~nfL~lL~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~SA~~Ls~~q~~~  315 (317)
                       ++++.+.||+.+|++++|+..+++|++.|.+++++++|++.|+|+||+|||++|.+.
T Consensus       162 -~~~~~~~nfl~~lv~~~R~~~l~~i~~~f~~l~~~~~~~~~a~VtSA~pLs~~q~~~  218 (271)
T PRK13430        162 -KVTPVTERLAEQAVGRPRGRSIEEGLDELSNLAAARRGRSVATVTTAVPLSDEQKQR  218 (271)
T ss_pred             -cCCHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHcCeeEEEEEecCCCCHHHHHH
Confidence             799999999999999999999999999999999999999999999999999988753

>PF00213 OSCP: ATP synthase delta (OSCP) subunit; InterPro: IPR000711 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.85  E-value=3.9e-23  Score=178.74  Aligned_cols=121  Identities=27%  Similarity=0.387  Sum_probs=106.3

Q ss_pred             chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhCCHHHHHhhhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHc
Q psy4192         195 TDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALLAEN  274 (317)
Q Consensus       195 ia~~YA~AL~~~A~e~~~l~~v~~~L~~l~~v~~~~~~l~~~L~~p~i~~~~K~~ll~~v~~~~~~~~~~~nfL~lL~~~  274 (317)
                      ||++||+|||+.|.+.+.++.|.++|..+..++.++|+|+.+|.||.++.++|.++++.+|++ ++++.+.|||++|+++
T Consensus         1 ia~~YA~AL~~~a~e~~~l~~v~~~l~~l~~~~~~~~~l~~~l~~p~i~~~~K~~~l~~~~~~-~~~~~~~nfL~~l~~~   79 (172)
T PF00213_consen    1 IAKRYAKALFELAKEEGKLDEVLEELQSLLEILKSNPELRKFLESPFIPKEEKKELLDEIFKG-KLSEETVNFLKLLIDN   79 (172)
T ss_dssp             HHHCHHHHHHHHCCCCTTHHHHHHHHHHH-HHHCCSCCCHHHHT-TTTTCCCCCCCCCHHCTT-T-SCCCCHHHHHHCCT
T ss_pred             CchHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCHHHHHHHcCccccHHHHHHHHHHHHcc-cCCHHHHHHHHHHHhc
Confidence            689999999999999999999999999999999999999999999999999999999999984 7999999999999999


Q ss_pred             CCcccHHHHHHHHHHHHHHHcCceeEEEEeeccCCCCCCCCC
Q psy4192         275 GKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLTGHPSNS  316 (317)
Q Consensus       275 ~R~~~l~~I~~~f~~l~~~~~~~~~~~V~SA~~Ls~~q~~~~  316 (317)
                      +|+..+++|+..|.++++++.|+..|+|+||.|||++|.+..
T Consensus        80 ~r~~~l~~i~~~~~~~~~~~~~~~~~~V~sA~~l~~~q~~~l  121 (172)
T PF00213_consen   80 NRLSLLPEILEEFEELVNEHNGIVEATVTSAFPLSEEQKKKL  121 (172)
T ss_dssp             T-CCCHHHHHHHHHHHHHHHCCTS-B-SSS-B----SSSTTT
T ss_pred             CCcccHHHHHHHHHHHHHHHcCeEEEEEEEecCCCHHHHHHH
Confidence            999999999999999999999999999999999999998753

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta in bacterial and chloroplast ATPase, or OSCP (oligomycin sensitivity conferral protein) in mitochondrial ATPase (note that in mitochondria there is a different delta subunit, IPR001469 from INTERPRO). The OSCP/delta subunit appears to be part of the peripheral stalk that holds the F1 complex alpha3beta3 catalytic core stationary against the torque of the rotating central stalk, and links subunit A of the F0 complex with the F1 complex. In mitochondria, the peripheral stalk consists of OSCP, as well as F0 components F6, B and D. In bacteria and chloroplasts the peripheral stalks have different subunit compositions: delta and two copies of F0 component B (bacteria), or delta and F0 components B and B' (chloroplasts) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport; PDB: 2A7U_B 1ABV_A 2WSS_S 2BO5_A 2JMX_A.

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=99.82  E-value=5.4e-20  Score=180.85  Aligned_cols=164  Identities=16%  Similarity=0.169  Sum_probs=139.8

Q ss_pred             ecCCCcCCcEeccCCcchhhhhhc--c--chhhhhhhhhccCcccccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Q psy4192         152 VDPSIIGDPKSNALTTAPLKLARS--F--STSQISQQLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQQAL  227 (317)
Q Consensus       152 vDpsLIGG~~I~vg~~viD~svr~--~--~~~~~~~~~~~~~~~~~~ia~~YA~AL~~~A~e~~~l~~v~~~L~~l~~v~  227 (317)
                      -||+-=|.-+...=+.++++-+-.  .  -.+..+++.-.|--..+++.+.|++|||++|.+.|.+++|+++|+.+.+++
T Consensus       224 ~d~~~~~~~k~~l~~~l~~~~~~~~~~~~~~~~~~~rws~~~dl~~~~~~~~~~AL~~~A~e~~~l~~v~~eL~~~~~~l  303 (445)
T PRK13428        224 TEPAEDAAPKIRLVERLFSGKVGAPTLEVLRTAVSQRWSANSDLIDALEHVARLALLERAERAGQVDEVEDQLFRFSRIL  303 (445)
T ss_pred             CCCCCChhhHHHHHHHHhCcCCCHHHHHHHHHHHhCccCccccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            466665555554444444433321  1  225666777777667788999999999999999999999999999999999


Q ss_pred             hCCHHHHHhhhCCCCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCceeEEEEeec
Q psy4192         228 KTDVKFRDFVLDPTIQKSLKIEALKIVGQKK-NFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITAR  306 (317)
Q Consensus       228 ~~~~~l~~~L~~p~i~~~~K~~ll~~v~~~~-~~~~~~~nfL~lL~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~SA~  306 (317)
                      .++|+|+.+|.||.++.++|.+++..+|++. ++++.+.||+.+|++++|+..+++|+..|.+++++++|++.|+||||+
T Consensus       304 ~~~~el~~~L~~p~i~~~~K~~ll~~l~~~~~~~~~~~~nfl~~lv~~~R~~~l~~i~~~~~~l~~~~~g~~~a~VtsA~  383 (445)
T PRK13428        304 DAQPRLAILLSDYTVPADGRVALLRKVLGGASTVNPVTVALLSQTVELLRGQPAEEAVLFLAELAVARRGEVVAQVSAAA  383 (445)
T ss_pred             hcCHHHHHHHhCCCCCHHHHHHHHHHHHhccccCCHHHHHHHHHHHHCCchhhHHHHHHHHHHHHHHHCCeeEEEEEeec
Confidence            9999999999999999999999999999732 699999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCC
Q psy4192         307 FWLTGHPSN  315 (317)
Q Consensus       307 ~Ls~~q~~~  315 (317)
                      |||++|.++
T Consensus       384 pLs~~q~~~  392 (445)
T PRK13428        384 ELSDAQRTR  392 (445)
T ss_pred             CCCHHHHHH
Confidence            999988653

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B

Probab=99.58  E-value=3.4e-14  Score=129.84  Aligned_cols=105  Identities=16%  Similarity=0.187  Sum_probs=82.5

Q ss_pred             CCCHHHH-HHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEec
Q psy4192          75 NFSAASI-NLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVD  153 (317)
Q Consensus        75 ~~~~~~~-nfL~vl~e~~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vD  153 (317)
                      .++.... .++.-.++.  +..+|+-...+..-.....| ..++|+||+||+++++++|.+.|.+.+  |+++.+++.||
T Consensus       140 ~~d~~~~~~lid~~i~~--l~~l~~~~~~~l~~~~~~~~-~~~~v~sa~~l~~~~~~~i~~~l~~~~--~~~v~~~~~vd  214 (246)
T TIGR03321       140 LADTDLEERMVDVFVQR--LRTLDPDEKAALAEALADSG-NPVLVRSAFELPEEQREQIRDTIRETL--GPEIRLRFQTE  214 (246)
T ss_pred             hcChHHHHHHHHHHHHH--hhcCCHHHHHHHHHHHhCCC-CceEEEecCCCCHHHHHHHHHHHHHHH--CCCeeEEeeeC
Confidence            3443333 555655544  55555554454433333344 669999999999999999999999999  78999999999


Q ss_pred             CCCcCCcEeccCCcchhhhhhccchhhhhhhh
Q psy4192         154 PSIIGDPKSNALTTAPLKLARSFSTSQISQQL  185 (317)
Q Consensus       154 psLIGG~~I~vg~~viD~svr~~~~~~~~~~~  185 (317)
                      |+|||||+|++||++||+|+++ .+.+++.++
T Consensus       215 p~ligGi~l~~g~~~id~Si~~-~L~~l~~~~  245 (246)
T TIGR03321       215 PDLIGGIELTAGGHKLAWSVDD-YLESLEEDV  245 (246)
T ss_pred             chhcCceEEEECCEEEechHHH-HHHHHHhhc
Confidence            9999999999999999999999 888887764

CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.

>PRK14474 F0F1 ATP synthase subunit B; Provisional

Probab=98.58  E-value=6e-07  Score=82.28  Aligned_cols=73  Identities=10%  Similarity=-0.005  Sum_probs=65.1

Q ss_pred             cCCCceEEEeecCCCHHHHHHHHHHHHH-HhcCCCeEEEEEEecCCCcCCcEeccCCcchhhhhhccchhhhhhhhh
Q psy4192         111 RGDLPVEVITARPLEEADKSELQSTLKL-FAKKGENILLTTKVDPSIIGDPKSNALTTAPLKLARSFSTSQISQQLV  186 (317)
Q Consensus       111 ~~~~~v~V~sA~~Ls~~q~~~I~~~l~~-~~~~~~~i~l~~~vDpsLIGG~~I~vg~~viD~svr~~~~~~~~~~~~  186 (317)
                      .+...+.|+||+||++++.++|.+.+.. .+  |..+.+.+.+||+||+|+.+.+||+.+.+|+.+ -++++++.+.
T Consensus       173 ~~~~~~~i~ta~~l~~~~~~~~~~~l~~~~~--~~~~~~~f~~~p~li~Giel~~~~~~i~ws~~~-yl~~l~~~~~  246 (250)
T PRK14474        173 TTPEMLRIRTSFELSQDLRAQILESLHQTHL--IPGTDIHFVTSPELICGIELKTEGYKIAWTLAE-YLDALESQLT  246 (250)
T ss_pred             cCCCCeEEEeCCCCCHHHHHHHHHHHHHHhc--CCCCceeeecCcccccCeEEecCCceEeccHHH-HHHHHHHHHH
Confidence            4666799999999999999999999999 88  788889999999999999999999999999999 4666666543

>PRK06669 fliH flagellar assembly protein H; Validated

Probab=96.79  E-value=0.0026  Score=59.27  Aligned_cols=100  Identities=13%  Similarity=0.062  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCC-c
Q psy4192          79 ASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSI-I  157 (317)
Q Consensus        79 ~~~nfL~vl~e~~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsL-I  157 (317)
                      ...+++..+.++++.-.++-|...+..+.    +...++|.. .|=+-+........+...+  +....+....||+| -
T Consensus       175 iaekvi~~~~~~~~~~i~~li~~al~~l~----~~~~i~I~V-~p~d~~~l~~~~~~l~~~l--~~~~~i~I~~D~~l~~  247 (281)
T PRK06669        175 IAKKVIKEISENSKEIALALVKELLKEVK----DATDITIRV-NPEDYEYVKEQKDELISLL--DNEEHLKIYEDDAISK  247 (281)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHHcC----cCCcEEEEE-CHHHHHHHHHhHHHHHHhc--CCCCCeEEEECCCCCC
Confidence            44578888888888776766666555543    333455554 3333333344444455555  44456667788777 4


Q ss_pred             CCcEeccCCcchhhhhhccchhhhhhhhh
Q psy4192         158 GDPKSNALTTAPLKLARSFSTSQISQQLV  186 (317)
Q Consensus       158 GG~~I~vg~~viD~svr~~~~~~~~~~~~  186 (317)
                      ||++|..++-.+|+|+.+ ++.+|++.|.
T Consensus       248 GgcvIet~~G~IDasi~t-qLe~l~~~L~  275 (281)
T PRK06669        248 GGCVIETDFGNIDARIDT-QLKQLKEKLL  275 (281)
T ss_pred             CCeEEEcCCCeeeccHHH-HHHHHHHHHH
Confidence            999999999999999999 9998888764

>TIGR03825 FliH_bacil flagellar assembly protein FliH

Probab=90.90  E-value=5.2  Score=36.70  Aligned_cols=84  Identities=11%  Similarity=0.020  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCc-CCcEeccCCcchhhhhh
Q psy4192          96 IDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSII-GDPKSNALTTAPLKLAR  174 (317)
Q Consensus        96 l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLI-GG~~I~vg~~viD~svr  174 (317)
                      +..++..+...+   .+.-.++|+. .|-+-+.+......+...+  +....+....||+|- ||++|..++=.+|+|+.
T Consensus       161 i~~lv~~al~~l---~~~~~i~I~v-~p~d~~~v~~~~~~l~~~~--~~~~~i~i~~D~~l~~GgcvIEt~~G~iDasld  234 (255)
T TIGR03825       161 FQALVRQVLSEV---REFDEVSIYV-HPHWYERVAAQKDELQSIL--PACEHLAVYPDEKLPDGGCYVETNFGRIDASVD  234 (255)
T ss_pred             HHHHHHHHHHhc---cCCCcEEEEE-CHHHHHHHHHhHHHHHhhc--CCCCceEEEeCCCCCCCCeEEEcCCceEEeeHH
Confidence            444444444433   2333444443 2223333334445566666  444577888999996 99999999999999999


Q ss_pred             ccchhhhhhhhh
Q psy4192         175 SFSTSQISQQLV  186 (317)
Q Consensus       175 ~~~~~~~~~~~~  186 (317)
                      + ++.++++.|.
T Consensus       235 t-qLe~l~~~l~  245 (255)
T TIGR03825       235 T-QLEQLKEKLL  245 (255)
T ss_pred             H-HHHHHHHHHH
Confidence            9 8888877664

This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.

>PRK03963 V-type ATP synthase subunit E; Provisional

Probab=90.20  E-value=10  Score=33.07  Aligned_cols=63  Identities=8%  Similarity=-0.022  Sum_probs=37.2

Q ss_pred             EeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEec--cCCcchhhhhhccchhhhhhhh
Q psy4192         119 ITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSN--ALTTAPLKLARSFSTSQISQQL  185 (317)
Q Consensus       119 ~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~--vg~~viD~svr~~~~~~~~~~~  185 (317)
                      ..+.|=+.+-.+.....+.+.+  | .+.+...-+++.+|||++.  -|+-.+|.|..+ -+..+++.+
T Consensus       124 i~~~~~D~~~~~~~~~~~~~~~--~-~~~i~~~~~~~~~GGvil~s~~g~i~~dnT~e~-~l~~~~~~~  188 (198)
T PRK03963        124 VRSNERTLKLIDSRLEEIRDEL--G-DVEIELGEPIETIGGVIVETKDGTIRVDNTFEA-RMERLESEL  188 (198)
T ss_pred             EEEccccHHHHHHHHHHHHHHh--C-CeEEEECCCCCccceEEEEeCCCCEEEeCcHHH-HHHHHHHHh
Confidence            3444534444444445555666  4 3444433346789999997  677778988887 455444443

>PF02108 FliH: Flagellar assembly protein FliH; InterPro: IPR018035 This entry represents a region found in the flagellar assembly protein FliH, as well as in type III secretion system protein HrpE

Probab=89.93  E-value=4.7  Score=32.20  Aligned_cols=59  Identities=17%  Similarity=0.061  Sum_probs=43.0

Q ss_pred             HcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCC-cCCcEeccCCcchhhhhhc
Q psy4192         110 HRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSI-IGDPKSNALTTAPLKLARS  175 (317)
Q Consensus       110 ~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsL-IGG~~I~vg~~viD~svr~  175 (317)
                      ..+.-.++|+.    +++..+.+.+.+..... +.  .++...||+| -||++|..++-.+|+++.+
T Consensus        64 ~~~~~~v~I~v----~p~d~~~l~~~~~~~~~-~~--~~~l~~D~~l~~G~c~iet~~g~iD~~i~~  123 (128)
T PF02108_consen   64 PRDEEKVTIRV----HPDDYEALEELLEDELP-EL--GWELVADPSLAPGDCRIETEDGIIDASIET  123 (128)
T ss_pred             hccCCCeEEEE----CHHHHHHHHHHHHHHHh-hc--CCEEEecCCCCCCCEEEEECCeeEEeCHHH
Confidence            33444455543    68888888888875542 22  2377799997 6889999999999999887

Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export []. The sequence of fliH has been deduced and shown to encode a protein of molecular mass of 25,782 Da. Bacterial HrpE proteins are belived to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) [].

>PRK02292 V-type ATP synthase subunit E; Provisional

Probab=87.94  E-value=7.5  Score=33.72  Aligned_cols=32  Identities=6%  Similarity=-0.093  Sum_probs=24.1

Q ss_pred             ecCCCcCCcEec--cCCcchhhhhhccchhhhhhh
Q psy4192         152 VDPSIIGDPKSN--ALTTAPLKLARSFSTSQISQQ  184 (317)
Q Consensus       152 vDpsLIGG~~I~--vg~~viD~svr~~~~~~~~~~  184 (317)
                      -+++++|||++.  -|+-++|.|..+ -+..+++.
T Consensus       143 ~~~~~~GGvil~~~~g~I~~dnT~~~-rl~~~~~~  176 (188)
T PRK02292        143 GNIDCLGGVVVESEDGRVRVNNTFDS-ILEDVWED  176 (188)
T ss_pred             CCCCCCceEEEEecCCceEEeccHHH-HHHHHHHH
Confidence            468899999998  677778999888 44444443

>PRK06937 type III secretion system protein; Reviewed

Probab=87.20  E-value=18  Score=31.85  Aligned_cols=72  Identities=11%  Similarity=0.016  Sum_probs=49.0

Q ss_pred             HcCCCceEEEeecCCCHHHHHHHHHHHHHHhcC-CCeEEEEEEecCCC-cCCcEeccCCcchhhhhhccchhhhhhhhh
Q psy4192         110 HRGDLPVEVITARPLEEADKSELQSTLKLFAKK-GENILLTTKVDPSI-IGDPKSNALTTAPLKLARSFSTSQISQQLV  186 (317)
Q Consensus       110 ~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~-~~~i~l~~~vDpsL-IGG~~I~vg~~viD~svr~~~~~~~~~~~~  186 (317)
                      ..+.-.++|.    +++++.+.+.+.+...... +..-.+....||+| -||.+|..++=.+|+|+.+ ++.++++.+.
T Consensus       127 l~~~~~v~I~----V~P~D~~~v~~~~~~~~~~~~~~~~l~i~~D~~L~~Ggc~iET~~G~vDasl~t-ql~~l~~al~  200 (204)
T PRK06937        127 VSNQKQVVVR----VNPDQAAAVREQIAKVLKDFPEVGYLEVVADARLDQGGCILETEVGIIDASLDG-QLEALEQAFH  200 (204)
T ss_pred             cccCCeEEEE----ECHHHHHHHHHHHHHHHHhCCCCccEEEEeCCCCCCCCeEEecCCceEEccHHH-HHHHHHHHHH
Confidence            3344445554    3566776776654433210 22235778899998 5789999999999999999 8888877664

>PRK06328 type III secretion system protein; Validated

Probab=85.62  E-value=13  Score=33.52  Aligned_cols=58  Identities=9%  Similarity=-0.007  Sum_probs=43.1

Q ss_pred             CCHHHHHHHHHH---HHHHhcCCCeEEEEEEecCCC-cCCcEeccCCcchhhhhhccchhhhhhh
Q psy4192         124 LEEADKSELQST---LKLFAKKGENILLTTKVDPSI-IGDPKSNALTTAPLKLARSFSTSQISQQ  184 (317)
Q Consensus       124 Ls~~q~~~I~~~---l~~~~~~~~~i~l~~~vDpsL-IGG~~I~vg~~viD~svr~~~~~~~~~~  184 (317)
                      +++++.+.+.+.   +...+  +....+....||+| -||++|..+.-.+|+|+.+ ++.+|++.
T Consensus       138 VnP~D~~~v~~~~~~l~~~~--~~~~~~~I~~D~~L~~GgCiIET~~G~VDasle~-ql~~l~~a  199 (223)
T PRK06328        138 VNPKDLAIVEKSRPELKKIV--EYADSLIISPKADVTPGGCIIETEAGIINAQLDV-QLAALEKA  199 (223)
T ss_pred             ECHHHHHHHHHHHHHHHHhc--cCCCceEEEeCCCCCCCCeEEEeCCceEEecHHH-HHHHHHHH
Confidence            356666666554   44445  33346788899999 5779999999999999999 88666653

>PRK05687 fliH flagellar assembly protein H; Validated

Probab=84.48  E-value=21  Score=32.38  Aligned_cols=59  Identities=14%  Similarity=0.014  Sum_probs=45.1

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCC-cCCcEeccCCcchhhhhhccchhhhhhhhh
Q psy4192         124 LEEADKSELQSTLKLFAKKGENILLTTKVDPSI-IGDPKSNALTTAPLKLARSFSTSQISQQLV  186 (317)
Q Consensus       124 Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsL-IGG~~I~vg~~viD~svr~~~~~~~~~~~~  186 (317)
                      ++++..+.|++.+..... .  -.+....||+| -||++|..++-.+|+++.+ ...++.+.|.
T Consensus       182 v~P~D~~~v~~~~~~~~~-~--~~~~l~~D~~l~~Ggc~iet~~g~vDa~l~~-r~~~l~~~l~  241 (246)
T PRK05687        182 VNPDDLELVEQLLGAELS-L--HGWRLLADPSLHRGGCRISAEEGDVDASLET-RWQEVCRLLA  241 (246)
T ss_pred             ECHHHHHHHHHHHhhHHH-h--CCeEEEeCCCcCCCCeEEEeCCCceeccHHH-HHHHHHHHHh
Confidence            578888888888775441 2  24677899999 5889999999999999988 6666655543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	317
2wss_S	190	The Structure Of The Membrane Extrinsic Region Of B		2e-24
2wss_S	190	The Structure Of The Membrane Extrinsic Region Of B		9e-21
2bo5_A	120	Bovine Oligomycin Sensitivity Conferral Protein N-T		1e-21

>pdb|2WSS|S Chain S, The Structure Of The Membrane Extrinsic Region Of Bovine Atp Synthase Length = 190

Iteration: 1
 Score =  109 bits (273), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/158 (37%), Positives = 89/158 (56%), Gaps = 18/158 (11%)
Query: 19  QLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISF------------------QK 60
           +LV+ PVQ++G +GRYATALYSAA+K  +L+ VEKEL+                    ++
Sbjct: 3   KLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILKEPKXAASLLNPYVKR 62
Query: 61  SLKIEALKIVGQKKNFXXXXXXXXXXXXENGKIKNIDGVINNFSIIMAAHRGDLPVEVIT 120
           S+K+++L     K+ F            ENG++ N   VI+ FS   + HRG++P  V T
Sbjct: 63  SVKVKSLSDXTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTXXSVHRGEVPCTVTT 122
Query: 121 ARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIG 158
           A  L+E   +EL++ LK F  KG+ + L  K+DPSI G
Sbjct: 123 ASALDETTLTELKTVLKSFLSKGQVLKLEVKIDPSIXG 160

>pdb|2WSS|S Chain S, The Structure Of The Membrane Extrinsic Region Of Bovine Atp Synthase Length = 190

Iteration: 1
 Score = 97.4 bits (241), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 50/122 (40%), Positives = 76/122 (62%), Gaps = 1/122 (0%)
Query: 184 QLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQ 243
           +LV+ PVQ++G +GRYATALYSAA+K  +L+ VEKEL+   Q LK + K    +L+P ++
Sbjct: 3   KLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILK-EPKXAASLLNPYVK 61
Query: 244 KSLKIEALKIVGQKKNFXXXXXXXXXXXXENGKIKNIDGVINNFSIIMAAHRGDLPVEVI 303
           +S+K+++L     K+ F            ENG++ N   VI+ FS   + HRG++P  V 
Sbjct: 62  RSVKVKSLSDXTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTXXSVHRGEVPCTVT 121
Query: 304 TA 305
           TA
Sbjct: 122 TA 123

>pdb|2BO5|A Chain A, Bovine Oligomycin Sensitivity Conferral Protein N-Terminal Domain Length = 120

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 49/119 (41%), Positives = 77/119 (64%), Gaps = 1/119 (0%)
Query: 184 QLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQ 243
           +LV+ PVQ++G +GRYATALYSAA+K  +L+ VEKEL+   Q LK + K    +L+P ++
Sbjct: 3   KLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILK-EPKMAASLLNPYVK 61
Query: 244 KSLKIEALKIVGQKKNFXXXXXXXXXXXXENGKIKNIDGVINNFSIIMAAHRGDLPVEV 302
           +S+K+++L  +  K+ F            ENG++ N   VI+ FS +M+ HRG++P  V
Sbjct: 62  RSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTV 120

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	317
2wss_S	190	ATP synthase subunit O, mitochondrial; hydrogen IO	6e-34
2wss_S	190	ATP synthase subunit O, mitochondrial; hydrogen IO	3e-28
1abv_A	134	Delta subunit of the F1F0-ATP synthase; ATP synthe	1e-16
1abv_A	134	Delta subunit of the F1F0-ATP synthase; ATP synthe	1e-14

>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP synthesis, phosphoprotein, UBL conjugation, transit peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A 2jmx_A Length = 190

 Score =  121 bits (307), Expect = 6e-34
 Identities = 67/158 (42%), Positives = 99/158 (62%), Gaps = 18/158 (11%)

Query: 19  QLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQKSL---------------- 62
           +LV+ PVQ++G +GRYATALYSAA+K  +L+ VEKEL+   + L                
Sbjct: 3   KLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILKEPKMAASLLNPYVKR 62

Query: 63  --KIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVIT 120
             K+++L  +  K+ FS  + NL+ LLAENG++ N   VI+ FS +M+ HRG++P  V T
Sbjct: 63  SVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTVTT 122

Query: 121 ARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIG 158
           A  L+E   +EL++ LK F  KG+ + L  K+DPSI+G
Sbjct: 123 ASALDETTLTELKTVLKSFLSKGQVLKLEVKIDPSIMG 160

>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP synthesis, phosphoprotein, UBL conjugation, transit peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A 2jmx_A Length = 190

 Score =  106 bits (268), Expect = 3e-28
 Identities = 57/123 (46%), Positives = 86/123 (69%), Gaps = 1/123 (0%)

Query: 184 QLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQ 243
           +LV+ PVQ++G +GRYATALYSAA+K  +L+ VEKEL+   Q LK   K    +L+P ++
Sbjct: 3   KLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILKEP-KMAASLLNPYVK 61

Query: 244 KSLKIEALKIVGQKKNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVI 303
           +S+K+++L  +  K+ FS  + NL+ LLAENG++ N   VI+ FS +M+ HRG++P  V 
Sbjct: 62  RSVKVKSLSDMTAKEKFSPLTSNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTVT 121

Query: 304 TAR 306
           TA 
Sbjct: 122 TAS 124

>1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis, F1-ATPase, spectroscopy; NMR {Escherichia coli} SCOP: a.70.1.1 PDB: 2a7u_B Length = 134

 Score = 74.3 bits (183), Expect = 1e-16
 Identities = 21/108 (19%), Positives = 49/108 (45%), Gaps = 3/108 (2%)

Query: 198 RYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQK 257
            YA A +  A + + ++  +  L +F   +  + +  + +      ++L    + + G++
Sbjct: 9   PYAKAAFDFAVEHQSVERWQDML-AFAAEVTKNEQMAELLSGALAPETLAESFIAVCGEQ 67

Query: 258 KNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITA 305
                   NL+ ++AENG++  +  V+  F  + A       V+VI+A
Sbjct: 68  --LDENGQNLIRVMAENGRLNALPDVLEQFIHLRAVSEATAEVDVISA 113

>1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis, F1-ATPase, spectroscopy; NMR {Escherichia coli} SCOP: a.70.1.1 PDB: 2a7u_B Length = 134

 Score = 68.9 bits (169), Expect = 1e-14
 Identities = 23/121 (19%), Positives = 48/121 (39%), Gaps = 16/121 (13%)

Query: 33  RYATALYSAATKLKQLDGVEKELISFQKSLKIEALK----------------IVGQKKNF 76
            YA A +  A + + ++  +  L    +  K E +                 I    +  
Sbjct: 9   PYAKAAFDFAVEHQSVERWQDMLAFAAEVTKNEQMAELLSGALAPETLAESFIAVCGEQL 68

Query: 77  SAASINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTL 136
                NL+ ++AENG++  +  V+  F  + A       V+VI+A  L E   +++ + +
Sbjct: 69  DENGQNLIRVMAENGRLNALPDVLEQFIHLRAVSEATAEVDVISAAALSEQQLAKISAAM 128

Query: 137 K 137
           +
Sbjct: 129 E 129

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	317
2wss_S	190	ATP synthase subunit O, mitochondrial; hydrogen IO	100.0
1abv_A	134	Delta subunit of the F1F0-ATP synthase; ATP synthe	99.93
2wss_S	190	ATP synthase subunit O, mitochondrial; hydrogen IO	99.93
1abv_A	134	Delta subunit of the F1F0-ATP synthase; ATP synthe	99.88
2dm9_A	198	V-type ATP synthase subunit E; A-ATPase, structura	90.22

>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP synthesis, phosphoprotein, UBL conjugation, transit peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A 2jmx_A

Probab=100.00  E-value=7.2e-38  Score=274.01  Aligned_cols=169  Identities=41%  Similarity=0.640  Sum_probs=137.4

Q ss_pred             cccCCCchhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------------------HHHHHHHHHHhccCCCCHHH
Q psy4192          19 QLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQK------------------SLKIEALKIVGQKKNFSAAS   80 (317)
Q Consensus        19 ~~~~~~~~~~~va~~YA~AL~~~a~e~~~~~~v~~~l~~l~~------------------~~K~~ll~~~~~~~~~~~~~   80 (317)
                      +.++||.+.++|++|||+|||++|.+.+.++.|+++|..+..                  ++|.+++..+|++.++++.+
T Consensus         3 ~~~~~~~~~~~ia~rYA~AL~~~A~e~~~l~~v~~~L~~l~~~~~~~~l~~~l~~P~i~~~~K~~~l~~~~~~~~~~~~~   82 (190)
T 2wss_S            3 KLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILKEPKMAASLLNPYVKRSVKVKSLSDMTAKEKFSPLT   82 (190)
T ss_dssp             CCCCCTTCCCSSSCTTHHHHHHHTTTTTCHHHHHHHHHHHHHHSSSTTSHHHHTCTTTTTSTTTTTTTHHHHTTTCCSSS
T ss_pred             cccCCchHhhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHCCHHHHHHHhCCCCCHHHHHHHHHHHHcccCCCHHH
Confidence            357999999999999999999999999999999999999987                  78999999999843699999


Q ss_pred             HHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCc
Q psy4192          81 INLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDP  160 (317)
Q Consensus        81 ~nfL~vl~e~~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~  160 (317)
                      .|||++|++|+|+.++++|+.+|.+++++++|+..|+|+||.|||++|+++|.+.|++++|+|+++.++++|||+||||+
T Consensus        83 ~nfl~ll~~~~R~~~l~~I~~~f~~l~~~~~~~~~a~V~sA~~Ls~~q~~~l~~~L~~~~g~~~~v~l~~~vDpsLiGG~  162 (190)
T 2wss_S           83 SNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTVTTASALDETTLTELKTVLKSFLSKGQVLKLEVKIDPSIMGGM  162 (190)
T ss_dssp             SHHHHHHHHTTCGGGHHHHHHHHHHHHTTTSCCCCBCSSSCBCCCCSSSTTTTTTTTSSTTTCC----------------
T ss_pred             HHHHHHHHhCCcHhhHHHHHHHHHHHHHHHcCeeEEEEEECCCCCHHHHHHHHHHHHHHHCCCCeEEEEEEEChhHhCeE
Confidence            99999999999999999999999999999999999999999999999999999999999932479999999999999999


Q ss_pred             EeccCCcchhhhhhccchhhhhhhhhcc
Q psy4192         161 KSNALTTAPLKLARSFSTSQISQQLVKA  188 (317)
Q Consensus       161 ~I~vg~~viD~svr~~~~~~~~~~~~~~  188 (317)
                      +|++||++||+|+++ .+.++++.|.+|
T Consensus       163 ~v~vgd~viD~Sv~~-~L~~l~~~L~~~  189 (190)
T 2wss_S          163 IVRIGEKYVDMSAKT-KIQKLSRAMREI  189 (190)
T ss_dssp             ------CCTTTTTTT-TTTTTCTTTTTC
T ss_pred             EEEECCEEEehhHHH-HHHHHHHHHhhc
Confidence            999999999999999 899999988665

>1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis, F1-ATPase, spectroscopy; NMR {Escherichia coli} SCOP: a.70.1.1 PDB: 2a7u_B

Probab=99.93  E-value=7.9e-26  Score=186.63  Aligned_cols=122  Identities=16%  Similarity=0.302  Sum_probs=96.7

Q ss_pred             cccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhCCHHHHHhhhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy4192         192 VFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALL  271 (317)
Q Consensus       192 ~~~ia~~YA~AL~~~A~e~~~l~~v~~~L~~l~~v~~~~~~l~~~L~~p~i~~~~K~~ll~~v~~~~~~~~~~~nfL~lL  271 (317)
                      .++||+|||+|||++|.++|.+++|. ++..+...+.++|+|+.+|. |.++.++|.+++..+|++ ++++.+.|||++|
T Consensus         3 ~~~ia~rYA~AL~~~A~e~~~l~~~~-e~~~~~~~~~~~~~l~~~l~-P~i~~~~K~~~l~~~~~~-~~~~~~~nfl~ll   79 (134)
T 1abv_A            3 FITVARPYAKAAFDFAVEHQSVERWQ-DMLAFAAEVTKNEQMAELLS-GALAPETLAESFIAVCGE-QLDENGQNLIRVM   79 (134)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHHHTSHHHHHHHT-CSSCHHHHHHHHHHHHCS-CCCHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHhcCCHHHHH-HHHHHHHHHhcCHHHHHHHC-ccCCHHHHHHHHHHHHhc-cCCHHHHHHHHHH
Confidence            46899999999999999999999996 66666677788999999999 999999999999999984 8999999999999


Q ss_pred             HHcCCcccHHHHHHHHHHHHHHHcCceeEEEEeeccCCCCCCCCC
Q psy4192         272 AENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLTGHPSNS  316 (317)
Q Consensus       272 ~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~SA~~Ls~~q~~~~  316 (317)
                      ++|+|+..|++|+..|..++++++|++.|+||||+|||++|++..
T Consensus        80 ~~~~Rl~~l~~I~~~f~~l~~~~~~~~~a~V~SA~~Ls~~q~~~l  124 (134)
T 1abv_A           80 AENGRLNALPDVLEQFIHLRAVSEATAEVDVISAAALSEQQLAKI  124 (134)
T ss_dssp             HHTTCGGGHHHHHHHHHHHHHHHHHC-------------------
T ss_pred             HHCCcHHHHHHHHHHHHHHHHHHCCeeEEEEEecCCCCHHHHHHH
Confidence            999999999999999999999999999999999999999998753

>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP synthesis, phosphoprotein, UBL conjugation, transit peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A 2jmx_A

Probab=99.93  E-value=2.4e-27  Score=207.16  Aligned_cols=132  Identities=43%  Similarity=0.685  Sum_probs=126.9

Q ss_pred             hhhccCcccccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhCCHHHHHhhhCCCCCHHHHHHHHHHHhhcCCCCHH
Q psy4192         184 QLVKAPVQVFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAA  263 (317)
Q Consensus       184 ~~~~~~~~~~~ia~~YA~AL~~~A~e~~~l~~v~~~L~~l~~v~~~~~~l~~~L~~p~i~~~~K~~ll~~v~~~~~~~~~  263 (317)
                      ..++||++.++||+|||+|||++|.+++.+++|.++|..+..++. +|+|+.+|.||.++.++|.+++.++|++.++++.
T Consensus         3 ~~~~~~~~~~~ia~rYA~AL~~~A~e~~~l~~v~~~L~~l~~~~~-~~~l~~~l~~P~i~~~~K~~~l~~~~~~~~~~~~   81 (190)
T 2wss_S            3 KLVRPPVQIYGIEGRYATALYSAASKQNKLEQVEKELLRVGQILK-EPKMAASLLNPYVKRSVKVKSLSDMTAKEKFSPL   81 (190)
T ss_dssp             CCCCCTTCCCSSSCTTHHHHHHHTTTTTCHHHHHHHHHHHHHHSS-STTSHHHHTCTTTTTSTTTTTTTHHHHTTTCCSS
T ss_pred             cccCCchHhhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHC-CHHHHHHHhCCCCCHHHHHHHHHHHHcccCCCHH
Confidence            368999999999999999999999999999999999999999999 9999999999999999999999999984468999


Q ss_pred             HHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCceeEEEEeeccCCCCCCCCC
Q psy4192         264 SINLLALLAENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARFWLTGHPSNS  316 (317)
Q Consensus       264 ~~nfL~lL~~~~R~~~l~~I~~~f~~l~~~~~~~~~~~V~SA~~Ls~~q~~~~  316 (317)
                      +.|||++|++|+|+..+++|+++|..++++++|++.|+|+||+|||++|.+..
T Consensus        82 ~~nfl~ll~~~~R~~~l~~I~~~f~~l~~~~~~~~~a~V~sA~~Ls~~q~~~l  134 (190)
T 2wss_S           82 TSNLINLLAENGRLTNTPAVISAFSTMMSVHRGEVPCTVTTASALDETTLTEL  134 (190)
T ss_dssp             SSHHHHHHHHTTCGGGHHHHHHHHHHHHTTTSCCCCBCSSSCBCCCCSSSTTT
T ss_pred             HHHHHHHHHhCCcHhhHHHHHHHHHHHHHHHcCeeEEEEEECCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998764

>1abv_A Delta subunit of the F1F0-ATP synthase; ATP synthesis, F1-ATPase, spectroscopy; NMR {Escherichia coli} SCOP: a.70.1.1 PDB: 2a7u_B

Probab=99.88  E-value=1.3e-22  Score=167.31  Aligned_cols=114  Identities=19%  Similarity=0.298  Sum_probs=78.3

Q ss_pred             hhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----------------HHHHHHHHHHhccCCCCHHHHHHHHHHH
Q psy4192          26 QVFGTDGRYATALYSAATKLKQLDGVEKELISFQK-----------------SLKIEALKIVGQKKNFSAASINLLALLA   88 (317)
Q Consensus        26 ~~~~va~~YA~AL~~~a~e~~~~~~v~~~l~~l~~-----------------~~K~~ll~~~~~~~~~~~~~~nfL~vl~   88 (317)
                      ...+|++|||+|||++|.+.|.++.|.+.+..+..                 ++|.+++..+|+ +++++.+.|||++|+
T Consensus         2 ~~~~ia~rYA~AL~~~A~e~~~l~~~~e~~~~~~~~~~~~~l~~~l~P~i~~~~K~~~l~~~~~-~~~~~~~~nfl~ll~   80 (134)
T 1abv_A            2 EFITVARPYAKAAFDFAVEHQSVERWQDMLAFAAEVTKNEQMAELLSGALAPETLAESFIAVCG-EQLDENGQNLIRVMA   80 (134)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSHHHHHHHTCSSCHHHHHHHHHHHHC-SCCCHHHHHHHHHHH
T ss_pred             chhhhhhHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCHHHHHHHCccCCHHHHHHHHHHHHh-ccCCHHHHHHHHHHH
Confidence            35789999999999999999999999754433322                 889999999997 589999999999999


Q ss_pred             HcCCcccHHHHHHHHHHHHHHHcCCCceEEEeecCCCHHHHHHHHHHHHHHh
Q psy4192          89 ENGKIKNIDGVINNFSIIMAAHRGDLPVEVITARPLEEADKSELQSTLKLFA  140 (317)
Q Consensus        89 e~~r~~~l~~I~~~f~~~~~~~~~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~  140 (317)
                      +|||+.++++|+..|..++++++|++.|+|+||.|||++|+++|.+.|++++
T Consensus        81 ~~~Rl~~l~~I~~~f~~l~~~~~~~~~a~V~SA~~Ls~~q~~~l~~~L~~~~  132 (134)
T 1abv_A           81 ENGRLNALPDVLEQFIHLRAVSEATAEVDVISAAALSEQQLAKISAAMEKRL  132 (134)
T ss_dssp             HTTCGGGHHHHHHHHHHHHHHHHHC---------------------------
T ss_pred             HCCcHHHHHHHHHHHHHHHHHHCCeeEEEEEecCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999998

>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A

Probab=90.22  E-value=0.36  Score=40.58  Aligned_cols=62  Identities=6%  Similarity=-0.102  Sum_probs=40.3

Q ss_pred             ecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEecc--CCcchhhhhhccchhhhhhhhh
Q psy4192         121 ARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNA--LTTAPLKLARSFSTSQISQQLV  186 (317)
Q Consensus       121 A~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~v--g~~viD~svr~~~~~~~~~~~~  186 (317)
                      ..|-+.+..+.+...+.+.|+ +..+.+  .-++...||++|..  |+..+|.|+.+ .+..+.+.+.
T Consensus       126 v~~~D~~~v~~~~~~~~~~~~-~~~l~i--~~~~~~~GG~~i~~~~G~i~id~tl~~-rl~~~~~~l~  189 (198)
T 2dm9_A          126 SNEKTLGLIASRIEEIKSELG-DVSIEL--GETVDTMGGVIVETEDGRIRIDNTFEA-RMERFEGEIR  189 (198)
T ss_dssp             CCHHHHHHHHHTHHHHHHHCT-TCEEEE--CCCCCCSSEEEEEETTSSCEEEEEHHH-HHHHTHHHHH
T ss_pred             ECHhHHHHHHHHHHHHHHHhc-CceEEE--CCCCCccCceEEEeCCCCEEEECcHHH-HHHHHHHHhH
Confidence            334344555555556666663 334444  22567889999988  67799999999 6666666553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	317
d1abva_	105	a.70.1.1 (A:) N-terminal domain of the delta subun	1e-11
d1abva_	105	a.70.1.1 (A:) N-terminal domain of the delta subun	3e-08

>d1abva_ a.70.1.1 (A:) N-terminal domain of the delta subunit of the F1F0-ATP synthase {Escherichia coli [TaxId: 562]} Length = 105

class: All alpha proteins
fold: ATPD N-terminal domain-like
superfamily: N-terminal domain of the delta subunit of the F1F0-ATP synthase
family: N-terminal domain of the delta subunit of the F1F0-ATP synthase
domain: N-terminal domain of the delta subunit of the F1F0-ATP synthase
species: Escherichia coli [TaxId: 562]

 Score = 58.5 bits (141), Expect = 1e-11
 Identities = 16/99 (16%), Positives = 41/99 (41%), Gaps = 3/99 (3%)

Query: 198 RYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQK 257
            YA A +  A + + ++  +  L +F   +  + +  + +      ++L    + +    
Sbjct: 9   PYAKAAFDFAVEHQSVERWQDML-AFAAEVTKNEQMAELLSGALAPETLAESFIAVC--G 65

Query: 258 KNFSAASINLLALLAENGKIKNIDGVINNFSIIMAAHRG 296
           +       NL+ ++AENG++  +  V+  F  + A    
Sbjct: 66  EQLDENGQNLIRVMAENGRLNALPDVLEQFIHLRAVSEA 104

>d1abva_ a.70.1.1 (A:) N-terminal domain of the delta subunit of the F1F0-ATP synthase {Escherichia coli [TaxId: 562]} Length = 105

class: All alpha proteins
fold: ATPD N-terminal domain-like
superfamily: N-terminal domain of the delta subunit of the F1F0-ATP synthase
family: N-terminal domain of the delta subunit of the F1F0-ATP synthase
domain: N-terminal domain of the delta subunit of the F1F0-ATP synthase
species: Escherichia coli [TaxId: 562]

 Score = 48.4 bits (115), Expect = 3e-08
 Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 16/96 (16%)

Query: 33  RYATALYSAATKLKQLDGVEKELISFQKSLKIEALK----------------IVGQKKNF 76
            YA A +  A + + ++  +  L    +  K E +                 I    +  
Sbjct: 9   PYAKAAFDFAVEHQSVERWQDMLAFAAEVTKNEQMAELLSGALAPETLAESFIAVCGEQL 68

Query: 77  SAASINLLALLAENGKIKNIDGVINNFSIIMAAHRG 112
                NL+ ++AENG++  +  V+  F  + A    
Sbjct: 69  DENGQNLIRVMAENGRLNALPDVLEQFIHLRAVSEA 104

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	317
d1abva_	105	N-terminal domain of the delta subunit of the F1F0	99.85
d1abva_	105	N-terminal domain of the delta subunit of the F1F0	99.69
d2dm9a1	118	V-type ATP synthase subunit E {Pyrococcus horikosh	85.54

>d1abva_ a.70.1.1 (A:) N-terminal domain of the delta subunit of the F1F0-ATP synthase {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: ATPD N-terminal domain-like
superfamily: N-terminal domain of the delta subunit of the F1F0-ATP synthase
family: N-terminal domain of the delta subunit of the F1F0-ATP synthase
domain: N-terminal domain of the delta subunit of the F1F0-ATP synthase
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=2.6e-21  Score=151.23  Aligned_cols=103  Identities=17%  Similarity=0.287  Sum_probs=92.5

Q ss_pred             cccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhCCHHHHHhhhCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q psy4192         192 VFGTDGRYATALYSAATKLKQLDGVEKELISFQQALKTDVKFRDFVLDPTIQKSLKIEALKIVGQKKNFSAASINLLALL  271 (317)
Q Consensus       192 ~~~ia~~YA~AL~~~A~e~~~l~~v~~~L~~l~~v~~~~~~l~~~L~~p~i~~~~K~~ll~~v~~~~~~~~~~~nfL~lL  271 (317)
                      .+|||+|||+|||++|.++|.+++|.++|..+..++ ++|++..+|.+|.++.++| ..+..++. .++++.+.|||.+|
T Consensus         3 ~~TiArrYAkALf~lA~e~~~l~~~~~~l~~l~~l~-~~~~~~~~l~~p~~~~~kk-~~l~~~~~-~~~~~~~~nfl~lL   79 (105)
T d1abva_           3 FITVARPYAKAAFDFAVEHQSVERWQDMLAFAAEVT-KNEQMAELLSGALAPETLA-ESFIAVCG-EQLDENGQNLIRVM   79 (105)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TSHHHHHHHTCSSCHHHHH-HHHHHHHC-SCCCHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHH-cCHHHHHHHhcccCcHHHH-HHHHHHHh-cccCHHHHHHHHHH
Confidence            478999999999999999999999999999999988 5899999999887766555 55556665 38999999999999


Q ss_pred             HHcCCcccHHHHHHHHHHHHHHHcCc
Q psy4192         272 AENGKIKNIDGVINNFSIIMAAHRGD  297 (317)
Q Consensus       272 ~~~~R~~~l~~I~~~f~~l~~~~~~~  297 (317)
                      ++|+|+..|++|+..|..++++++|+
T Consensus        80 ~~~~Rl~~l~~I~~~f~~L~~~~e~T  105 (105)
T d1abva_          80 AENGRLNALPDVLEQFIHLRAVSEAT  105 (105)
T ss_dssp             HHTTCGGGHHHHHHHHHHHHHHHHHC
T ss_pred             HHCccHHHHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999874

>d1abva_ a.70.1.1 (A:) N-terminal domain of the delta subunit of the F1F0-ATP synthase {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: ATPD N-terminal domain-like
superfamily: N-terminal domain of the delta subunit of the F1F0-ATP synthase
family: N-terminal domain of the delta subunit of the F1F0-ATP synthase
domain: N-terminal domain of the delta subunit of the F1F0-ATP synthase
species: Escherichia coli [TaxId: 562]

Probab=99.69  E-value=9.1e-17  Score=124.99  Aligned_cols=87  Identities=18%  Similarity=0.289  Sum_probs=78.4

Q ss_pred             hhhhhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----------------HHHHHHHHHHhccCCCCHHHHHHHHHHH
Q psy4192          26 QVFGTDGRYATALYSAATKLKQLDGVEKELISFQK-----------------SLKIEALKIVGQKKNFSAASINLLALLA   88 (317)
Q Consensus        26 ~~~~va~~YA~AL~~~a~e~~~~~~v~~~l~~l~~-----------------~~K~~ll~~~~~~~~~~~~~~nfL~vl~   88 (317)
                      +..+||+|||+|||++|.|.|.++.|.++|..+..                 ++|...+..+++ +++++.+.|||++|+
T Consensus         2 e~~TiArrYAkALf~lA~e~~~l~~~~~~l~~l~~l~~~~~~~~~l~~p~~~~~kk~~l~~~~~-~~~~~~~~nfl~lL~   80 (105)
T d1abva_           2 EFITVARPYAKAAFDFAVEHQSVERWQDMLAFAAEVTKNEQMAELLSGALAPETLAESFIAVCG-EQLDENGQNLIRVMA   80 (105)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSHHHHHHHTCSSCHHHHHHHHHHHHC-SCCCHHHHHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHHHhcCChhHHHHHHHHHHHHHcCHHHHHHHhcccCcHHHHHHHHHHHh-cccCHHHHHHHHHHH
Confidence            45789999999999999999999999999988876                 566677777776 589999999999999


Q ss_pred             HcCCcccHHHHHHHHHHHHHHHcCC
Q psy4192          89 ENGKIKNIDGVINNFSIIMAAHRGD  113 (317)
Q Consensus        89 e~~r~~~l~~I~~~f~~~~~~~~~~  113 (317)
                      +|||+.+|++|+..|.+++++++|.
T Consensus        81 ~~~Rl~~l~~I~~~f~~L~~~~e~T  105 (105)
T d1abva_          81 ENGRLNALPDVLEQFIHLRAVSEAT  105 (105)
T ss_dssp             HTTCGGGHHHHHHHHHHHHHHHHHC
T ss_pred             HCccHHHHHHHHHHHHHHHHHHcCC
Confidence            9999999999999999999998763

>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: V-type ATPase subunit E-like
family: V-type ATPase subunit E
domain: V-type ATP synthase subunit E
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=85.54  E-value=0.57  Score=34.54  Aligned_cols=60  Identities=7%  Similarity=-0.054  Sum_probs=37.4

Q ss_pred             CCCceEEEeecCCCHHHHHHHHHHHHHHhcCCCeEEEEEEecCCCcCCcEecc--CCcchhhhhhc
Q psy4192         112 GDLPVEVITARPLEEADKSELQSTLKLFAKKGENILLTTKVDPSIIGDPKSNA--LTTAPLKLARS  175 (317)
Q Consensus       112 ~~~~v~V~sA~~Ls~~q~~~I~~~l~~~~~~~~~i~l~~~vDpsLIGG~~I~v--g~~viD~svr~  175 (317)
                      +.-.+.|..... +.+-.+.+...+.+.+   +...+...-+++++|||++..  |.-.+|.|..+
T Consensus        38 ~~~ev~v~~~~~-D~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~GGvil~s~dG~I~vdnTle~   99 (118)
T d2dm9a1          38 NEKKVRVMSNEK-TLGLIASRIEEIKSEL---GDVSIELGETVDTMGGVIVETEDGRIRIDNTFEA   99 (118)
T ss_dssp             TCSEEEEECCHH-HHHHHHHTHHHHHHHC---TTCEEEECCCCCCSSEEEEEETTSSCEEEEEHHH
T ss_pred             CCCcEEEEEchh-hHHHHHHHHHHHHHHc---CCceeEeCCCCccCCCEEEEecCCCEEEECcHHH
Confidence            344455544332 4445555555555554   233445556789999999987  66788988877