Psyllid ID: psy422

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
PAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRTGAGSGGMWRYYTDDSPGIKVKSPAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRSSS
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccEEEcccccccccccEEHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccEEEcccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
papasstsvgsgtrspkaggpggrptgstvrqrkpttttaarsnrtgagsggmwryytddspgikvkspapasstsvgsgtrspkaggpggrptgstvrqrkpttttaarsnrtgagsggmwryytddspgikvgpvPVLVMSLLFIASVFMLHIWgkytrsss
Flexible Loop (DISEMBL)
papasstsvgsgtrspkaggpggrptgstvrqrkpttttaarsnrtgagsggmwRYYTDDSpgikvkspapasstsvgsgtrspkaggpggrptgstvrqrkpttttaarsnrtgagsggmwRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRSSS
Low Complexity Region (SEG)
PAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRTGAGSGGMWRYYTDDSPGIKVKSPAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRSSS
Disordered region (IsUnstruct)
*****************************************************WRYY**************************************************************GMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKY*****
Disordered Region (DISOPRED)
***************************************************************************************************************************YYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS**
Disordered Region (DISEMBL)
**********************************************GAGSGGMWRYYTDDSPGIK*************************************************GAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRSSS
Disordered Region (DISPRO)
***************************************************G*WR*YTDDSPGIKVK***************************************************GGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTR***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
PAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRTGAGSGGMWRYYTDDSPGIKVKSPAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRSSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	164	2.2.26 [Sep-21-2011]
Q5RB31	96	Protein transport protein	yes	N/A	0.542	0.927	0.681	9e-26
P60468	96	Protein transport protein	yes	N/A	0.542	0.927	0.681	9e-26
P60467	96	Protein transport protein	yes	N/A	0.542	0.927	0.681	9e-26
Q9CQS8	96	Protein transport protein	yes	N/A	0.542	0.927	0.670	2e-25
Q54YR4	61	Protein transport protein	yes	N/A	0.335	0.901	0.492	2e-10
Q9HFC7	91	Protein transport protein	yes	N/A	0.347	0.626	0.483	2e-07
O43002	102	Protein transport protein	yes	N/A	0.530	0.852	0.357	3e-07
P38389	82	Protein transport protein	no	N/A	0.378	0.756	0.444	5e-07
Q8J2P4	88	Protein transport protein	yes	N/A	0.414	0.772	0.316	0.0003
P52871	88	Protein transport protein	yes	N/A	0.445	0.829	0.312	0.0003

>sp|Q5RB31|SC61B_PONAB Protein transport protein Sec61 subunit beta OS=Pongo abelii GN=SEC61B PE=3 SV=3

 Score =  115 bits (289), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 62/91 (68%), Positives = 70/91 (76%), Gaps = 2/91 (2%)

Query: 73  SSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRT-GAGSGGMWRYYTDDSPG 131
           S T+VGS  RSP +     R  GSTVRQRK  +     + RT  AG+GGMWR+YT+DSPG
Sbjct: 7   SGTNVGSSGRSP-SKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPG 65

Query: 132 IKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 162
           +KVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct: 66  LKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

Necessary for protein translocation in the endoplasmic reticulum.
Pongo abelii (taxid: 9601)

>sp|P60468|SC61B_HUMAN Protein transport protein Sec61 subunit beta OS=Homo sapiens GN=SEC61B PE=1 SV=2

 Score =  115 bits (289), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 62/91 (68%), Positives = 70/91 (76%), Gaps = 2/91 (2%)

Query: 73  SSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRT-GAGSGGMWRYYTDDSPG 131
           S T+VGS  RSP +     R  GSTVRQRK  +     + RT  AG+GGMWR+YT+DSPG
Sbjct: 7   SGTNVGSSGRSP-SKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPG 65

Query: 132 IKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 162
           +KVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct: 66  LKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

Necessary for protein translocation in the endoplasmic reticulum.

Homo sapiens (taxid: 9606)

>sp|P60467|SC61B_CANFA Protein transport protein Sec61 subunit beta OS=Canis familiaris GN=SEC61B PE=1 SV=2

 Score =  115 bits (289), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 62/91 (68%), Positives = 70/91 (76%), Gaps = 2/91 (2%)

Query: 73  SSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRT-GAGSGGMWRYYTDDSPG 131
           S T+VGS  RSP +     R  GSTVRQRK  +     + RT  AG+GGMWR+YT+DSPG
Sbjct: 7   SGTNVGSSGRSP-SKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPG 65

Query: 132 IKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 162
           +KVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct: 66  LKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

Necessary for protein translocation in the endoplasmic reticulum.

Canis familiaris (taxid: 9615)

>sp|Q9CQS8|SC61B_MOUSE Protein transport protein Sec61 subunit beta OS=Mus musculus GN=Sec61b PE=1 SV=3

 Score =  115 bits (287), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/91 (67%), Positives = 70/91 (76%), Gaps = 2/91 (2%)

Query: 73  SSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRT-GAGSGGMWRYYTDDSPG 131
           S T+VGS  RSP +     R  GSTVRQRK  +     + RT  AG+GGMWR+YT+DSPG
Sbjct: 7   SGTNVGSSGRSP-SKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPG 65

Query: 132 IKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 162
           +KVGPVPVLVMSLLFIA+VFMLHIWGKYTRS
Sbjct: 66  LKVGPVPVLVMSLLFIAAVFMLHIWGKYTRS 96

Necessary for protein translocation in the endoplasmic reticulum.

Mus musculus (taxid: 10090)

>sp|Q54YR4|SC61B_DICDI Protein transport protein Sec61 subunit beta OS=Dictyostelium discoideum GN=sec61b PE=3 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 39/63 (61%), Gaps = 8/63 (12%)

Query: 100 QRKPTTTTAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKY 159
           QR P T           G   M ++Y++D+ G+KVGP  VL MSL+FIA V +LHI GKY
Sbjct: 7   QRAPATV--------NKGGNSMMKFYSEDAIGLKVGPTAVLFMSLIFIAFVIILHIMGKY 58

Query: 160 TRS 162
           TRS
Sbjct: 59  TRS 61

Necessary for protein translocation in the endoplasmic reticulum.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9HFC7|SC61B_YARLI Protein transport protein Sec61 subunit beta OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SBH1 PE=3 SV=1

 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/60 (48%), Positives = 38/60 (63%), Gaps = 3/60 (5%)

Query: 101 RKPTTTTAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYT 160
           ++PT+T   RS   G  S  M + YTD+S G+KV PV V+V+SL FI SV  LHI  K +
Sbjct: 30  QRPTST---RSVGAGGSSSTMLKLYTDESQGLKVDPVVVMVLSLGFIFSVVALHILAKVS 86

Necessary for protein translocation in the endoplasmic reticulum.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|O43002|SC61B_SCHPO Protein transport protein sec61 subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sbh1 PE=3 SV=1

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 11/98 (11%)

Query: 73  SSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRTGAGSGG---------MWR 123
           SST      ++  A  PGG P  S +R+R         SN   AG+           + +
Sbjct: 2   SSTKASGSVKNSAASAPGG-P-KSQIRRRAAVEKNTKESNSGPAGARAAGAPGSTPTLLK 59

Query: 124 YYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTR 161
            YTD++ G KV PV V+V+S+ FIASVF+LHI  +  +
Sbjct: 60  LYTDEASGFKVDPVVVMVLSVGFIASVFLLHIVARILK 97

Necessary for protein translocation in the endoplasmic reticulum.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P38389|SC61B_ARATH Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana GN=At2g45070 PE=3 SV=1

 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 44/63 (69%), Gaps = 1/63 (1%)

Query: 96  STVRQRKPTTTTAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHI 155
           +++R+RKPT+        +G  +G M ++YTDD+PG+K+ P  VL+MS+ FIA V +LH+
Sbjct: 16  ASMRRRKPTSGAGGGGA-SGGAAGSMLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHV 74

Query: 156 WGK 158
            GK
Sbjct: 75  MGK 77

Necessary for protein translocation in the endoplasmic reticulum.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8J2P4|SC61B_KLULA Protein transport protein Sec61 subunit beta OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=SBH1 PE=3 SV=1

 Score = 44.7 bits (104), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 43/79 (54%), Gaps = 11/79 (13%)

Query: 89  PGGRPTGSTVRQRKPTTTTAARSNRT-----GAGSGG----MWRYYTDDSPGIKVGPVPV 139
           PGG+ T    ++R        ++N+T      AG GG    + + YTD++ G++V P+ V
Sbjct: 6   PGGQRTLQ--KRRNAQLQKEKKANQTPASPRQAGFGGSSSSILKLYTDEANGLRVDPLVV 63

Query: 140 LVMSLLFIASVFMLHIWGK 158
           L +++ F+ SV  LH+  K
Sbjct: 64  LFLAVAFVFSVVALHVVAK 82

Necessary for protein translocation in the endoplasmic reticulum.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|P52871|SC6B2_YEAST Protein transport protein SBH2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SBH2 PE=1 SV=1

 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 7/80 (8%)

Query: 89  PGG------RPTGSTVRQRKPTTT-TAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLV 141
           PGG      R    ++++++   T T+ R    G  S  + + YTD++ G +V  + VL 
Sbjct: 7   PGGQRILQKRRQAQSIKEKQAKQTPTSTRQAGYGGSSSSILKLYTDEANGFRVDSLVVLF 66

Query: 142 MSLLFIASVFMLHIWGKYTR 161
           +S+ FI SV  LH+  K+T 
Sbjct: 67  LSVGFIFSVIALHLLTKFTH 86

Part of the Ssh1 complex, which probably is the major component of a channel-forming translocon complex that may function exclusively in the cotranslational pathway of protein endoplasmic reticulum (ER) import.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
195150464	100	GL11450 [Drosophila persimilis] gi|19845	0.554	0.91	0.715	2e-29
194757028	100	GF11335 [Drosophila ananassae] gi|190622	0.554	0.91	0.715	2e-29
91083317	94	PREDICTED: similar to AGAP011504-PA [Tri	0.530	0.925	0.75	2e-29
195429427	100	GK19628 [Drosophila willistoni] gi|19415	0.554	0.91	0.705	5e-29
195122970	109	GI20777 [Drosophila mojavensis] gi|19391	0.573	0.862	0.75	3e-28
149898803	96	Sec61 protein translocation complex beta	0.573	0.979	0.778	3e-28
156540298	95	PREDICTED: protein transport protein Sec	0.567	0.978	0.712	3e-28
112983408	97	transport protein Sec61 beta subunit [Bo	0.573	0.969	0.770	4e-28
322795695	159	hypothetical protein SINV_05925 [Solenop	0.640	0.660	0.669	5e-28
195028746	99	GH21806 [Drosophila grimshawi] gi|195382	0.554	0.919	0.762	9e-28

>gi|195150464|ref|XP_002016174.1| GL11450 [Drosophila persimilis] gi|198457263|ref|XP_001360608.2| GA10096 [Drosophila pseudoobscura pseudoobscura] gi|194110021|gb|EDW32064.1| GL11450 [Drosophila persimilis] gi|198135920|gb|EAL25183.2| GA10096 [Drosophila pseudoobscura pseudoobscura]

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/102 (71%), Positives = 83/102 (81%), Gaps = 11/102 (10%)

Query: 69  PAPASSTSVGSGTRSP------KAGGPGGRPTGSTVRQRKPTTTTAARSNRT--GAGSGG 120
           PAPASSTSVGSG+RSP      ++ G GG   GST++QRK T++T A  +R   GAG+GG
Sbjct: 2   PAPASSTSVGSGSRSPSKLSAPRSAGAGG---GSTLKQRKTTSSTTAARSRAPGGAGTGG 58

Query: 121 MWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 162
           MWR+YTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKY RS
Sbjct: 59  MWRFYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYNRS 100

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194757028|ref|XP_001960767.1| GF11335 [Drosophila ananassae] gi|190622065|gb|EDV37589.1| GF11335 [Drosophila ananassae]

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 73/102 (71%), Positives = 83/102 (81%), Gaps = 11/102 (10%)

Query: 69  PAPASSTSVGSGTRSP------KAGGPGGRPTGSTVRQRKPTTTTAARSNRT--GAGSGG 120
           PAPASSTSVGSG+RSP      ++ G GG   GST++QRK T++T A  +R   GAG+GG
Sbjct: 2   PAPASSTSVGSGSRSPSKLSAPRSSGAGG---GSTLKQRKTTSSTTAARSRAPGGAGTGG 58

Query: 121 MWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 162
           MWR+YTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKY RS
Sbjct: 59  MWRFYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYNRS 100

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91083317|ref|XP_974792.1| PREDICTED: similar to AGAP011504-PA [Tribolium castaneum] gi|270006931|gb|EFA03379.1| hypothetical protein TcasGA2_TC013365 [Tribolium castaneum]

 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 75/100 (75%), Positives = 80/100 (80%), Gaps = 13/100 (13%)

Query: 69  PAPASSTSVGSGTRSP------KAGGPGGRPTGSTVRQRKPTTTTAARSNRTGAGSGGMW 122
           PAPASST+VGSG RSP      ++GG      G TVRQRK T+   AR N TGAGSGGMW
Sbjct: 2   PAPASSTTVGSGGRSPSKTVAPRSGG------GGTVRQRKTTSAAPARRN-TGAGSGGMW 54

Query: 123 RYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 162
           R+YTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct: 55  RFYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 94

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195429427|ref|XP_002062764.1| GK19628 [Drosophila willistoni] gi|194158849|gb|EDW73750.1| GK19628 [Drosophila willistoni]

 Score =  132 bits (332), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 72/102 (70%), Positives = 82/102 (80%), Gaps = 11/102 (10%)

Query: 69  PAPASSTSVGSGTRSP------KAGGPGGRPTGSTVRQRKPTTTTAARSNRT--GAGSGG 120
           PAPASSTSVGSG+RSP      ++ G GG   GST++QRK T++  A  +R   GAG+GG
Sbjct: 2   PAPASSTSVGSGSRSPSKLSAPRSAGAGG---GSTLKQRKTTSSNTAARSRAPGGAGTGG 58

Query: 121 MWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 162
           MWR+YTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKY RS
Sbjct: 59  MWRFYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYNRS 100

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195122970|ref|XP_002005983.1| GI20777 [Drosophila mojavensis] gi|193911051|gb|EDW09918.1| GI20777 [Drosophila mojavensis]

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/104 (75%), Positives = 86/104 (82%), Gaps = 10/104 (9%)

Query: 66  VKSPAPASSTSVGSGTRSP------KAGGPGGRPTGSTVRQRKPTTTTAARSNRTG-AGS 118
           V+ PAPASSTSVGSG+RSP      ++ G GG   GST++QRK TTTTAARS   G AG+
Sbjct: 9   VQPPAPASSTSVGSGSRSPSKLSAPRSAGAGG---GSTLKQRKTTTTTAARSRAPGGAGT 65

Query: 119 GGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 162
           GGMWR+YTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKY RS
Sbjct: 66  GGMWRFYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYNRS 109

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|149898803|gb|ABR27863.1| Sec61 protein translocation complex beta subunit [Triatoma infestans] gi|344190604|gb|AEM97988.1| Sec61 protein translocation complex beta subunit [Dipetalogaster maximus]

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 74/95 (77%), Positives = 77/95 (81%), Gaps = 1/95 (1%)

Query: 69  PAPASSTSVGSGTRSP-KAGGPGGRPTGSTVRQRKPTTTTAARSNRTGAGSGGMWRYYTD 127
           PA  SST+VGSG+RSP K   P       TVRQRK TTTTAARS  T A SGGMWR+YTD
Sbjct: 2   PAAPSSTAVGSGSRSPAKMAAPRSSAGSGTVRQRKTTTTTAARSRNTAANSGGMWRFYTD 61

Query: 128 DSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 162
           DSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct: 62  DSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

Source: Triatoma infestans

Species: Triatoma infestans

Genus: Triatoma

Family: Reduviidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156540298|ref|XP_001599008.1| PREDICTED: protein transport protein Sec61 subunit beta-like [Nasonia vitripennis]

 Score =  129 bits (325), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/94 (71%), Positives = 72/94 (76%)

Query: 69  PAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRTGAGSGGMWRYYTDD 128
           PA  SSTSVG+ +RSP          G TVRQRK    T+AR+  TG  SGGMWR+YTDD
Sbjct: 2   PAAPSSTSVGAASRSPSKAVAPRAGLGGTVRQRKAAPATSARNRNTGTNSGGMWRFYTDD 61

Query: 129 SPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 162
           SPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct: 62  SPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 95

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|112983408|ref|NP_001037632.1| transport protein Sec61 beta subunit [Bombyx mori] gi|87248599|gb|ABD36352.1| transport protein Sec61 beta protein [Bombyx mori] gi|107953794|gb|ABF85698.1| transport protein Sec61 beta subunit [Bombyx mori]

 Score =  129 bits (325), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 74/96 (77%), Positives = 80/96 (83%), Gaps = 2/96 (2%)

Query: 69  PAPASSTSVGSGTRSPKAGGPGGR-PTGSTVRQRKPTTTTAARSNR-TGAGSGGMWRYYT 126
           P   S+TSVGSG+RSP     G R  +GSTVRQRK TTTT A  NR TGAGSGGMWR+YT
Sbjct: 2   PQSPSATSVGSGSRSPTKASAGPRTASGSTVRQRKSTTTTTAARNRSTGAGSGGMWRFYT 61

Query: 127 DDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 162
           DDSPG+KVGPVPVLVMSLLFIASVFMLHIWGKYTR+
Sbjct: 62  DDSPGVKVGPVPVLVMSLLFIASVFMLHIWGKYTRA 97

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795695|gb|EFZ18374.1| hypothetical protein SINV_05925 [Solenopsis invicta]

 Score =  129 bits (323), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 73/109 (66%), Positives = 82/109 (75%), Gaps = 4/109 (3%)

Query: 56  YYTDDSPGIKVKSPAPASSTSVGSGTRSP-KAGGPGGRPTGS-TVRQRKPTTTTAARSNR 113
           + + D   +    PA  S+TSVGS  RSP KA  P  R  GS TVRQRK T T++AR+  
Sbjct: 53  FESPDERTLAYVGPAAPSATSVGSVGRSPSKAIAP--RTGGSGTVRQRKTTVTSSARNRN 110

Query: 114 TGAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 162
           TG  SGGMWR+YTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTR+
Sbjct: 111 TGTSSGGMWRFYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRN 159

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195028746|ref|XP_001987237.1| GH21806 [Drosophila grimshawi] gi|195382290|ref|XP_002049863.1| GJ20512 [Drosophila virilis] gi|193903237|gb|EDW02104.1| GH21806 [Drosophila grimshawi] gi|194144660|gb|EDW61056.1| GJ20512 [Drosophila virilis]

 Score =  128 bits (321), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 77/101 (76%), Positives = 84/101 (83%), Gaps = 10/101 (9%)

Query: 69  PAPASSTSVGSGTRSP------KAGGPGGRPTGSTVRQRKPTTTTAARSNRTG-AGSGGM 121
           PAPASSTSVGSG+RSP      ++ G GG   GST++QRK TTTTAARS   G AG+GGM
Sbjct: 2   PAPASSTSVGSGSRSPSKLSAPRSAGAGG---GSTLKQRKTTTTTAARSRAPGGAGTGGM 58

Query: 122 WRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 162
           WR+YTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKY RS
Sbjct: 59  WRFYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYNRS 99

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
FB|FBgn0010638	100	Sec61beta "Sec61beta" [Drosoph	0.573	0.94	0.777	2e-33
UNIPROTKB|Q2NKT5	96	SEC61B "Sec61 beta subunit" [B	0.560	0.958	0.684	3.1e-28
ZFIN|ZDB-GENE-040718-260	97	sec61b "Sec61 beta subunit" [D	0.560	0.948	0.653	5e-28
RGD|1304997	96	Sec61b "Sec61 beta subunit" [R	0.560	0.958	0.673	6.4e-28
UNIPROTKB|F1NWX7	96	SEC61B "Uncharacterized protei	0.554	0.947	0.677	8.2e-28
UNIPROTKB|P60467	96	SEC61B "Protein transport prot	0.560	0.958	0.673	8.2e-28
UNIPROTKB|P60468	96	SEC61B "Protein transport prot	0.560	0.958	0.673	8.2e-28
UNIPROTKB|F2Z5P0	96	SEC61B "Uncharacterized protei	0.560	0.958	0.673	8.2e-28
UNIPROTKB|Q5RB31	96	SEC61B "Protein transport prot	0.560	0.958	0.673	8.2e-28
MGI|MGI:1913462	96	Sec61b "Sec61 beta subunit" [M	0.560	0.958	0.663	1.7e-27

FB|FBgn0010638 Sec61beta "Sec61beta" [Drosophila melanogaster (taxid:7227)]

 Score = 364 (133.2 bits), Expect = 2.0e-33, P = 2.0e-33
 Identities = 77/99 (77%), Positives = 82/99 (82%)

Query:    69 PAPASSTSVGSGTRSP-KAGGP--GGRPTGSTVRQRKPTT-TTAARSNRTG-AGSGGMWR 123
             PAPASSTSVGSG+RSP K   P   G   GST++QRK TT TTAARS   G AG+GGMWR
Sbjct:     2 PAPASSTSVGSGSRSPSKLSAPRSAGSGGGSTLKQRKTTTSTTAARSRAPGGAGTGGMWR 61

Query:   124 YYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 162
             +YTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKY RS
Sbjct:    62 FYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYNRS 100

GO:0006616 "SRP-dependent cotranslational protein targeting to membrane, translocation" evidence=ISS

GO:0005784 "Sec61 translocon complex" evidence=ISS;NAS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0010507 "negative regulation of autophagy" evidence=IMP

UNIPROTKB|Q2NKT5 SEC61B "Sec61 beta subunit" [Bos taurus (taxid:9913)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 65/95 (68%), Positives = 72/95 (75%)

Query:    69 PAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTT-TAARSNRTGAGSGGMWRYYTD 127
             PAP S T+VGS  RSP       R  GSTVRQRK  +  T +    T AG+GGMWR+YT+
Sbjct:     4 PAP-SGTNVGSSGRSPSKA-VAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTE 61

Query:   128 DSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 162
             DSPG+KVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct:    62 DSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

GO:0031205 "endoplasmic reticulum Sec complex" evidence=IDA

GO:0048408 "epidermal growth factor binding" evidence=IEA

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0000060 "protein import into nucleus, translocation" evidence=IEA

ZFIN|ZDB-GENE-040718-260 sec61b "Sec61 beta subunit" [Danio rerio (taxid:7955)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 64/98 (65%), Positives = 78/98 (79%)

Query:    69 PAPASS-TSVGSGTRSP-KAGGPGGRPTGSTVRQRKPTTTTAARSNRT--GAGSGGMWRY 124
             P PA+S T+VG+ +RSP K   P  R  G++ RQRK T+++A    R+   AG+GGMWR+
Sbjct:     2 PGPAASATNVGASSRSPSKTVAP--RTAGTSARQRKATSSSARSGGRSTASAGTGGMWRF 59

Query:   125 YTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 162
             YT+DSPG+KVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct:    60 YTEDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 97

GO:0005575 "cellular_component" evidence=ND

RGD|1304997 Sec61b "Sec61 beta subunit" [Rattus norvegicus (taxid:10116)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 64/95 (67%), Positives = 72/95 (75%)

Query:    69 PAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTT-TAARSNRTGAGSGGMWRYYTD 127
             P P S+T+VGS  RSP       R  GSTVRQRK  +  T +    T AG+GGMWR+YT+
Sbjct:     4 PTP-SATNVGSSGRSPSKA-VAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTE 61

Query:   128 DSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 162
             DSPG+KVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct:    62 DSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

GO:0000060 "protein import into nucleus, translocation" evidence=IEA;ISO

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0030433 "ER-associated protein catabolic process" evidence=IEA;ISO

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IEA;ISO

GO:0043022 "ribosome binding" evidence=ISO

GO:0048408 "epidermal growth factor binding" evidence=IEA;ISO

UNIPROTKB|F1NWX7 SEC61B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 65/96 (67%), Positives = 75/96 (78%)

Query:    69 PAPASSTSVGSGTRSP-KAGGPGGRPTGSTVRQRKPTTT-TAARSNRTGAGSGGMWRYYT 126
             P+P S+T+VG+  RSP KA  P  R  GSTVRQRK  +  T +    T  G+GGMWR+YT
Sbjct:     4 PSP-SATNVGTSGRSPSKAVAP--RAAGSTVRQRKNASCGTRSAGRATSTGTGGMWRFYT 60

Query:   127 DDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 162
             +DSPG+KVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct:    61 EDSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

GO:0000060 "protein import into nucleus, translocation" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IEA

GO:0048408 "epidermal growth factor binding" evidence=IEA

UNIPROTKB|P60467 SEC61B "Protein transport protein Sec61 subunit beta" [Canis lupus familiaris (taxid:9615)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 64/95 (67%), Positives = 71/95 (74%)

Query:    69 PAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTT-TAARSNRTGAGSGGMWRYYTD 127
             P P S T+VGS  RSP       R  GSTVRQRK  +  T +    T AG+GGMWR+YT+
Sbjct:     4 PTP-SGTNVGSSGRSPSKA-VAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTE 61

Query:   128 DSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 162
             DSPG+KVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct:    62 DSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=TAS

GO:0005783 "endoplasmic reticulum" evidence=TAS

GO:0031205 "endoplasmic reticulum Sec complex" evidence=ISS

GO:0048408 "epidermal growth factor binding" evidence=IEA

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0000060 "protein import into nucleus, translocation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|P60468 SEC61B "Protein transport protein Sec61 subunit beta" [Homo sapiens (taxid:9606)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 64/95 (67%), Positives = 71/95 (74%)

Query:    69 PAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTT-TAARSNRTGAGSGGMWRYYTD 127
             P P S T+VGS  RSP       R  GSTVRQRK  +  T +    T AG+GGMWR+YT+
Sbjct:     4 PTP-SGTNVGSSGRSPSKA-VAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTE 61

Query:   128 DSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 162
             DSPG+KVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct:    62 DSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

GO:0048408 "epidermal growth factor binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0030433 "ER-associated protein catabolic process" evidence=IDA

GO:0031205 "endoplasmic reticulum Sec complex" evidence=ISS

GO:0016021 "integral to membrane" evidence=NAS

GO:0000060 "protein import into nucleus, translocation" evidence=IMP

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IMP

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F2Z5P0 SEC61B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 64/95 (67%), Positives = 71/95 (74%)

Query:    69 PAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTT-TAARSNRTGAGSGGMWRYYTD 127
             P P S T+VGS  RSP       R  GSTVRQRK  +  T +    T AG+GGMWR+YT+
Sbjct:     4 PTP-SGTNVGSSGRSPSKA-VAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTE 61

Query:   128 DSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 162
             DSPG+KVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct:    62 DSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

GO:0048408 "epidermal growth factor binding" evidence=IEA

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=IEA

GO:0000060 "protein import into nucleus, translocation" evidence=IEA

UNIPROTKB|Q5RB31 SEC61B "Protein transport protein Sec61 subunit beta" [Pongo abelii (taxid:9601)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 64/95 (67%), Positives = 71/95 (74%)

Query:    69 PAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTT-TAARSNRTGAGSGGMWRYYTD 127
             P P S T+VGS  RSP       R  GSTVRQRK  +  T +    T AG+GGMWR+YT+
Sbjct:     4 PTP-SGTNVGSSGRSPSKA-VAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTE 61

Query:   128 DSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 162
             DSPG+KVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct:    62 DSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

GO:0031205 "endoplasmic reticulum Sec complex" evidence=ISS

MGI|MGI:1913462 Sec61b "Sec61 beta subunit" [Mus musculus (taxid:10090)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 63/95 (66%), Positives = 71/95 (74%)

Query:    69 PAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTT-TAARSNRTGAGSGGMWRYYTD 127
             P P S T+VGS  RSP       R  GSTVRQRK  +  T +    T AG+GGMWR+YT+
Sbjct:     4 PTP-SGTNVGSSGRSPSKA-VAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTE 61

Query:   128 DSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 162
             DSPG+KVGPVPVLVMSLLFIA+VFMLHIWGKYTRS
Sbjct:    62 DSPGLKVGPVPVLVMSLLFIAAVFMLHIWGKYTRS 96

GO:0000060 "protein import into nucleus, translocation" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030433 "ER-associated protein catabolic process" evidence=ISO

GO:0030970 "retrograde protein transport, ER to cytosol" evidence=ISO

GO:0043022 "ribosome binding" evidence=IDA

GO:0048408 "epidermal growth factor binding" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5RB31	SC61B_PONAB	No assigned EC number	0.6813	0.5426	0.9270	yes	N/A
P60467	SC61B_CANFA	No assigned EC number	0.6813	0.5426	0.9270	yes	N/A
Q9CQS8	SC61B_MOUSE	No assigned EC number	0.6703	0.5426	0.9270	yes	N/A
P60468	SC61B_HUMAN	No assigned EC number	0.6813	0.5426	0.9270	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	164
pfam03911	41	pfam03911, Sec61_beta, Sec61beta family	2e-20
PRK01253	54	PRK01253, PRK01253, preprotein translocase subunit	3e-05
pfam03911	41	pfam03911, Sec61_beta, Sec61beta family	1e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.004

>gnl|CDD|202805 pfam03911, Sec61_beta, Sec61beta family

 Score = 78.8 bits (195), Expect = 2e-20
 Identities = 24/40 (60%), Positives = 30/40 (75%)

Query: 118 SGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWG 157
           S G+ R+Y +++PGIKV P  VLV+SL FIASV  LHI G
Sbjct: 2   SAGLLRFYEEEAPGIKVDPKVVLVLSLGFIASVIALHILG 41

This family consists of homologues of Sec61beta - a component of the Sec61/SecYEG protein secretory system. The domain is found in eukaryotes and archaea and is possibly homologous to the bacterial SecG. It consists of a single putative transmembrane helix, preceded by a short stretch containing various charged residues; this arrangement may help determine orientation in the cell membrane. Length = 41

>gnl|CDD|179263 PRK01253, PRK01253, preprotein translocase subunit SecG; Reviewed

 Score = 39.5 bits (93), Expect = 3e-05
 Identities = 12/49 (24%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 108 AARSNRTGAGSG-GMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHI 155
             +    G  S  G+ RY+ +++  IK+ P  V+ + L     V +L+ 
Sbjct: 2   KKKKEGGGLMSSAGLIRYFEEETEAIKIDPKTVIAIGLALGIFVLVLNA 50

Length = 54

>gnl|CDD|202805 pfam03911, Sec61_beta, Sec61beta family

 Score = 37.2 bits (87), Expect = 1e-04
 Identities = 10/20 (50%), Positives = 15/20 (75%), Gaps = 1/20 (5%)

Query: 50 SGGMWRYYTDDSPGIKVKSP 69
          S G+ R+Y +++PGIKV  P
Sbjct: 2  SAGLLRFYEEEAPGIKV-DP 20

This family consists of homologues of Sec61beta - a component of the Sec61/SecYEG protein secretory system. The domain is found in eukaryotes and archaea and is possibly homologous to the bacterial SecG. It consists of a single putative transmembrane helix, preceded by a short stretch containing various charged residues; this arrangement may help determine orientation in the cell membrane. Length = 41

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 36.5 bits (85), Expect = 0.004
 Identities = 17/125 (13%), Positives = 26/125 (20%), Gaps = 2/125 (1%)

Query: 1   PAPASSTSVGSGTRSPKAGGPG--GRPTGSTVRQRKPTTTTAARSNRTGAGSGGMWRYYT 58
             PA+  +  +      AG        + +                   A  GG      
Sbjct: 613 ARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAK 672

Query: 59  DDSPGIKVKSPAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRTGAGS 118
                     PAPA +        +P    P    T    +   P       +    A S
Sbjct: 673 AGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPS 732

Query: 119 GGMWR 123
                
Sbjct: 733 PAADD 737

Length = 824

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
KOG3457|consensus	88		99.96
PF03911	41	Sec61_beta: Sec61beta family; InterPro: IPR005609	99.71
PRK01253	54	preprotein translocase subunit SecG; Reviewed	99.59
KOG3457|consensus	88		99.45
COG4023	57	SBH1 Preprotein translocase subunit Sec61beta [Int	98.44
PF03911	41	Sec61_beta: Sec61beta family; InterPro: IPR005609	97.79
PRK01253	54	preprotein translocase subunit SecG; Reviewed	97.23

>KOG3457|consensus

Probab=99.96  E-value=2.3e-30  Score=191.41  Aligned_cols=70  Identities=56%  Similarity=0.925  Sum_probs=61.8

Q ss_pred             CCcccccccCCC-----CCccccCCCCCCCccceeeeccCCCceeEeceeeehhhHHHHHHHHHHHhhhcccccC
Q psy422           94 TGSTVRQRKPTT-----TTAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRSS  163 (164)
Q Consensus        94 ~~~~vRqRk~~~-----~~s~r~~~~g~ss~gmlrfYtdds~GlKV~P~~VLvmSl~FI~~V~lLHI~gK~~~~~  163 (164)
                      ....+|||+...     +.++|+++.++++++||||||||++||||+|++||||||+||++||+||||+||++..
T Consensus        13 ~~~~~Rqrk~~~~a~~~pa~~raaG~~~~t~~mlkfYTDda~GlKV~PvvVLvmSvgFIasV~~LHi~gK~~~~~   87 (88)
T KOG3457|consen   13 ATAGRRQRKSGKEAGGGPASGRAAGAGGSTGGMLKFYTDDAPGLKVDPVVVLVMSVGFIASVFALHIWGKLTRSK   87 (88)
T ss_pred             hHHHHHhccccccccCCccccCcCCCCCCCCceeEEeecCCCCceeCCeeehhhhHHHHHHHHHHHHHHHHhhcc
Confidence            455689998762     4567777777899999999999999999999999999999999999999999999865

>PF03911 Sec61_beta: Sec61beta family; InterPro: IPR005609 This family consists of Sec61 subunit beta and homologues like archaeal SecG

Probab=99.71  E-value=1.2e-18  Score=112.76  Aligned_cols=41  Identities=51%  Similarity=1.014  Sum_probs=25.4

Q ss_pred             CCccceeeeccCCCceeEeceeeehhhHHHHHHHHHHHhhh
Q psy422          117 GSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWG  157 (164)
Q Consensus       117 ss~gmlrfYtdds~GlKV~P~~VLvmSl~FI~~V~lLHI~g  157 (164)
                      |++||||||+||++||||+|++||+++++||++|++||||+
T Consensus         1 Ssagl~r~y~ed~~giki~P~~Vl~~si~fi~~V~~Lhi~~   41 (41)
T PF03911_consen    1 SSAGLLRYYEEDAPGIKIDPKTVLIISIAFIAIVILLHIFA   41 (41)
T ss_dssp             ------------S-SS-BSCCHHHHHHHHHHHHHHHHT-SS
T ss_pred             CCCcceeeeeccCCcceeCCeehHHHHHHHHHHHHHHhhhC
Confidence            57899999999999999999999999999999999999985

This subunit is a component of the Sec61/SecYEG protein secretory system.; PDB: 2WWA_C 2WW9_C 3BO0_C 3KCR_C 3BO1_C 2YXR_C 3DKN_C 2YXQ_C 1RH5_C 1RHZ_C ....

>PRK01253 preprotein translocase subunit SecG; Reviewed

Probab=99.59  E-value=4e-16  Score=106.60  Aligned_cols=43  Identities=26%  Similarity=0.449  Sum_probs=40.8

Q ss_pred             CCCCccceeeeccCCCceeEeceeeehhhHHHHHHHHHHHhhh
Q psy422          115 GAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWG  157 (164)
Q Consensus       115 g~ss~gmlrfYtdds~GlKV~P~~VLvmSl~FI~~V~lLHI~g  157 (164)
                      .-+++||+||||||.+||||+|++||+|+|+||++|++||+|.
T Consensus        10 ~~ssAGL~ryy~ed~~~iKi~P~~Vi~~~~~~~~~v~~L~~~~   52 (54)
T PRK01253         10 LMSSAGLIRYFEEETEAIKIDPKTVIAIGLALGIFVLVLNALF   52 (54)
T ss_pred             CcccchhhhhhhcccCccccCCeeeeeeHHHHHHHHHHHHhhc
Confidence            4578999999999999999999999999999999999999985

>KOG3457|consensus

Probab=99.45  E-value=3.9e-14  Score=105.27  Aligned_cols=45  Identities=40%  Similarity=0.777  Sum_probs=35.6

Q ss_pred             CCCCCcceeeccCC--C---CcccccCccCCCCccceEEeecCCCCeeee
Q psy422           23 GRPTGSTVRQRKPT--T---TTAARSNRTGAGSGGMWRYYTDDSPGIKVK   67 (164)
Q Consensus        23 ~~~~~~~~RrR~~~--~---~~s~~~~~~g~~~~~mlrfYTDdspGLKi~   67 (164)
                      .++..+.+|||+..  +   ..++|+++.++++++||||||||+||||||
T Consensus        10 ~a~~~~~~Rqrk~~~~a~~~pa~~raaG~~~~t~~mlkfYTDda~GlKV~   59 (88)
T KOG3457|consen   10 GAAATAGRRQRKSGKEAGGGPASGRAAGAGGSTGGMLKFYTDDAPGLKVD   59 (88)
T ss_pred             chhhHHHHHhccccccccCCccccCcCCCCCCCCceeEEeecCCCCceeC
Confidence            44455668888864  2   245666777899999999999999999999

>COG4023 SBH1 Preprotein translocase subunit Sec61beta [Intracellular trafficking and secretion]

Probab=98.44  E-value=1.2e-07  Score=66.11  Aligned_cols=40  Identities=23%  Similarity=0.484  Sum_probs=37.1

Q ss_pred             CccceeeeccCCCc-eeEeceeeehhhHHHHHHHHHHHhhh
Q psy422          118 SGGMWRYYTDDSPG-IKVGPVPVLVMSLLFIASVFMLHIWG  157 (164)
Q Consensus       118 s~gmlrfYtdds~G-lKV~P~~VLvmSl~FI~~V~lLHI~g  157 (164)
                      +.|+++||+||..+ |||||..|+.+++.|++.|++-||+.
T Consensus        15 ~AGLi~f~eEee~~~ikidP~~vV~~~~av~~lvi~A~~f~   55 (57)
T COG4023          15 AAGLIRFFEEEEIKGIKIDPRLVVYAGIAVAILVIAAHIFA   55 (57)
T ss_pred             ccceeeeecccccCCcccCchhhHHHHHHHHHHHHHHHHhc
Confidence            67899999988875 99999999999999999999999985

>PF03911 Sec61_beta: Sec61beta family; InterPro: IPR005609 This family consists of Sec61 subunit beta and homologues like archaeal SecG

Probab=97.79  E-value=5.2e-06  Score=53.80  Aligned_cols=19  Identities=53%  Similarity=1.148  Sum_probs=4.9

Q ss_pred             CCccceEEeecCCCCeeee
Q psy422           49 GSGGMWRYYTDDSPGIKVK   67 (164)
Q Consensus        49 ~~~~mlrfYTDdspGLKi~   67 (164)
                      ++++|||||+||++|+||+
T Consensus         1 Ssagl~r~y~ed~~giki~   19 (41)
T PF03911_consen    1 SSAGLLRYYEEDAPGIKID   19 (41)
T ss_dssp             ------------S-SS-BS
T ss_pred             CCCcceeeeeccCCcceeC
Confidence            4678999999999999998

This subunit is a component of the Sec61/SecYEG protein secretory system.; PDB: 2WWA_C 2WW9_C 3BO0_C 3KCR_C 3BO1_C 2YXR_C 3DKN_C 2YXQ_C 1RH5_C 1RHZ_C ....

>PRK01253 preprotein translocase subunit SecG; Reviewed

Probab=97.23  E-value=7.3e-05  Score=51.29  Aligned_cols=20  Identities=30%  Similarity=0.753  Sum_probs=18.3

Q ss_pred             CCCccceEEeecCCCCeeee
Q psy422           48 AGSGGMWRYYTDDSPGIKVK   67 (164)
Q Consensus        48 ~~~~~mlrfYTDdspGLKi~   67 (164)
                      -++.+|||||+||.+|+||+
T Consensus        11 ~ssAGL~ryy~ed~~~iKi~   30 (54)
T PRK01253         11 MSSAGLIRYFEEETEAIKID   30 (54)
T ss_pred             cccchhhhhhhcccCccccC
Confidence            56678999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	164
2wwb_C	96	Cryo-Em Structure Of The Mammalian Sec61 Complex Bo		8e-27
2ww9_C	87	Cryo-Em Structure Of The Active Yeast Ssh1 Complex		3e-05

>pdb|2WWB|C Chain C, Cryo-Em Structure Of The Mammalian Sec61 Complex Bound To The Actively Translating Wheat Germ 80s Ribosome Length = 96

Iteration: 1
 Score =  115 bits (289), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 62/91 (68%), Positives = 70/91 (76%), Gaps = 2/91 (2%)
Query: 73  SSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRT-GAGSGGMWRYYTDDSPG 131
           S T+VGS  RSP +     R  GSTVRQRK  +     + RT  AG+GGMWR+YT+DSPG
Sbjct: 7   SGTNVGSSGRSP-SKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPG 65
Query: 132 IKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 162
           +KVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct: 66  LKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

>pdb|2WW9|C Chain C, Cryo-Em Structure Of The Active Yeast Ssh1 Complex Bound To The Yeast 80s Ribosome Length = 87

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 89  PGG------RPTGSTVRQRKPTTT-TAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLV 141
           PGG      R    ++++++   T T+ R    G  S  + + YTD++ G +V  + VL 
Sbjct: 7   PGGQRILQKRRQAQSIKEKQAKQTPTSTRQAGYGGSSSSILKLYTDEANGFRVDSLVVLF 66
Query: 142 MSLLFIASVFMLHIWGKYTR 161
           +S+ FI SV  LH+  K+T 
Sbjct: 67  LSVGFIFSVIALHLLTKFTH 86

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	164
2wwb_C	96	SEC61BETA, protein transport protein SEC61 subunit	9e-16
2wwb_C	96	SEC61BETA, protein transport protein SEC61 subunit	5e-05
2ww9_C	87	Protein transport protein SEB2; ribonucleoprotein,	4e-15

>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} Length = 96

 Score = 67.9 bits (165), Expect = 9e-16
 Identities = 53/95 (55%), Positives = 64/95 (67%)

Query: 68  SPAPASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRTGAGSGGMWRYYTD 127
                S T+VGS  RSP           +  +++  +  T +    T AG+GGMWR+YT+
Sbjct: 2   PGPTPSGTNVGSSGRSPSKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTE 61

Query: 128 DSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 162
           DSPG+KVGPVPVLVMSLLFIASVFMLHIWGKYTRS
Sbjct: 62  DSPGLKVGPVPVLVMSLLFIASVFMLHIWGKYTRS 96

>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris} Length = 96

 Score = 39.4 bits (91), Expect = 5e-05
 Identities = 25/65 (38%), Positives = 36/65 (55%)

Query: 2  APASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTTTTAARSNRTGAGSGGMWRYYTDDS 61
             S T+VGS  RSP           +  +++  +  T +    T AG+GGMWR+YT+DS
Sbjct: 4  PTPSGTNVGSSGRSPSKAVAARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDS 63

Query: 62 PGIKV 66
          PG+KV
Sbjct: 64 PGLKV 68

>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C Length = 87

 Score = 66.0 bits (160), Expect = 4e-15
 Identities = 23/69 (33%), Positives = 36/69 (52%)

Query: 92  RPTGSTVRQRKPTTTTAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVF 151
           R   S   ++   T T+ R    G  S  + + YTD++ G +V  + VL +S+ FI SV 
Sbjct: 17  RQAQSIKEKQAKQTPTSTRQAGYGGSSSSILKLYTDEANGFRVDSLVVLFLSVGFIFSVI 76

Query: 152 MLHIWGKYT 160
            LH+  K+T
Sbjct: 77  ALHLLTKFT 85

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
2wwb_C	96	SEC61BETA, protein transport protein SEC61 subunit	99.97
2ww9_C	87	Protein transport protein SEB2; ribonucleoprotein,	99.89
1rh5_C	53	Secbeta; protein translocation, SECY, membrane pro	99.55
2wwb_C	96	SEC61BETA, protein transport protein SEC61 subunit	99.49
2ww9_C	87	Protein transport protein SEB2; ribonucleoprotein,	98.73
1rh5_C	53	Secbeta; protein translocation, SECY, membrane pro	97.43

>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}

Probab=99.97  E-value=4.3e-33  Score=208.01  Aligned_cols=94  Identities=68%  Similarity=1.124  Sum_probs=35.0

Q ss_pred             cCCC-CCccccCCCCCCCCCCCCCCCCCCcccccccCCC-CCccccCCCCCCCccceeeeccCCCceeEeceeeehhhHH
Q psy422           68 SPAP-ASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTT-TTAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLVMSLL  145 (164)
Q Consensus        68 mp~~-~sst~vg~~grsp~~~~~~~~~~~~~vRqRk~~~-~~s~r~~~~g~ss~gmlrfYtdds~GlKV~P~~VLvmSl~  145 (164)
                      ||++ +|+|+|++++++|.+.+.+ +++++++||||.++ .++.+.++.+++++|||||||||++||||+|++||+|+|+
T Consensus         1 m~~~~~s~t~vg~~~~~p~~~a~~-~~~g~~~r~Rr~~~~~~~~~~~~~~~SsaGllRfY~dds~GlKV~P~~VLv~sl~   79 (96)
T 2wwb_C            1 MPGPTPSGTNVGSSGRSPSKAVAA-RAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVGPVPVLVMSLL   79 (96)
T ss_dssp             -------------------------------------------------------------CCSCCCCCSSCSHHHHHHH
T ss_pred             CCCcccCccccccCCCCCCccccc-ccCCcceEecccCCCccCCCCCCCCCCCcceeeeeecCCCceEECCEEehhhHHH
Confidence            7876 7999999999999887765 33556799999765 4455667778899999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhccccc
Q psy422          146 FIASVFMLHIWGKYTRS  162 (164)
Q Consensus       146 FI~~V~lLHI~gK~~~~  162 (164)
                      ||++||+||||+||+|.
T Consensus        80 Fi~~Vi~Lhi~~K~~r~   96 (96)
T 2wwb_C           80 FIASVFMLHIWGKYTRS   96 (96)
T ss_dssp             HHHHHHHHSCSSSCCCC
T ss_pred             HHHHHHHHHHhhhhccC
Confidence            99999999999999874

>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C

Probab=99.89  E-value=8.6e-25  Score=160.80  Aligned_cols=54  Identities=37%  Similarity=0.613  Sum_probs=21.0

Q ss_pred             CccccCCCCCCCccceeeeccCCCceeEeceeeehhhHHHHHHHHHHHhhhccc
Q psy422          107 TAARSNRTGAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIWGKYT  160 (164)
Q Consensus       107 ~s~r~~~~g~ss~gmlrfYtdds~GlKV~P~~VLvmSl~FI~~V~lLHI~gK~~  160 (164)
                      .++++++.+++++||||||+||++||||+|++||+|+|+||++||+||||+||+
T Consensus        32 ~s~~~~~~ggss~gllrfYtdds~GlKV~P~~VLv~sl~FIa~VilLHI~gK~~   85 (87)
T 2ww9_C           32 TSTRQAGYGGSSSSILKLYTDEANGFRVDSLVVLFLSVGFIFSVIALHLLTKFT   85 (87)
T ss_dssp             --------------------------CCCHHHHHHHHHHHHHHHHHC-------
T ss_pred             CCCCCCCCCCCchhHHHHhhcCCCceEEcCeeehhhHHHHHHHHHHHHHhhhhc
Confidence            455666778899999999999999999999999999999999999999999997

>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C

Probab=99.55  E-value=6.9e-16  Score=104.19  Aligned_cols=42  Identities=26%  Similarity=0.348  Sum_probs=29.3

Q ss_pred             CCCCccceeeeccCCCceeEeceeeehhhHHHHHHHHHHHhh
Q psy422          115 GAGSGGMWRYYTDDSPGIKVGPVPVLVMSLLFIASVFMLHIW  156 (164)
Q Consensus       115 g~ss~gmlrfYtdds~GlKV~P~~VLvmSl~FI~~V~lLHI~  156 (164)
                      ..+++||+|||+||++||||+|++||+++++||++|++||+.
T Consensus         9 ~~ssaGLvryy~ee~~giKi~P~~Vl~~si~~i~~V~~L~~~   50 (53)
T 1rh5_C            9 LATSAGLIRYMDETFSKIRVKPEHVIGVTVAFVIIEAILTYG   50 (53)
T ss_dssp             ------------CCCCSCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CcccccchhhhhccCCccccCCeehhhhHHHHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999985

>2wwb_C SEC61BETA, protein transport protein SEC61 subunit beta; ribosome, protein EXIT tunnel, cotranslational protein translocation, protein conducting channel; 6.48A {Canis lupus familiaris}

Probab=99.49  E-value=3.1e-15  Score=111.68  Aligned_cols=66  Identities=55%  Similarity=0.917  Sum_probs=8.9

Q ss_pred             CCC-CCCCccCCCCCCCCCCCCCCCCCCcceeeccCCC-CcccccCccCCCCccceEEeecCCCCeeee
Q psy422            1 PAP-ASSTSVGSGTRSPKAGGPGGRPTGSTVRQRKPTT-TTAARSNRTGAGSGGMWRYYTDDSPGIKVK   67 (164)
Q Consensus         1 ~~~-~sst~v~~~~rs~~~~~~~~~~~~~~~RrR~~~~-~~s~~~~~~g~~~~~mlrfYTDdspGLKi~   67 (164)
                      |++ +|+|+|++++++|..... +...++++||||.++ +.+.+.++.++++++|||||+||+|||||+
T Consensus         2 ~~~~~s~t~vg~~~~~p~~~a~-~~~~g~~~r~Rr~~~~~~~~~~~~~~~SsaGllRfY~dds~GlKV~   69 (96)
T 2wwb_C            2 PGPTPSGTNVGSSGRSPSKAVA-ARAAGSTVRQRKNASCGTRSAGRTTSAGTGGMWRFYTEDSPGLKVG   69 (96)
T ss_dssp             ------------------------------------------------------------CCSCCCCCS
T ss_pred             CCcccCccccccCCCCCCcccc-cccCCcceEecccCCCccCCCCCCCCCCCcceeeeeecCCCceEEC
Confidence            344 899999999888874411 111455799999654 345556677889999999999999999999

>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C

Probab=98.73  E-value=1.1e-09  Score=80.43  Aligned_cols=29  Identities=31%  Similarity=0.610  Sum_probs=2.8

Q ss_pred             cccccCccCCCCccceEEeecCCCCeeee
Q psy422           39 TAARSNRTGAGSGGMWRYYTDDSPGIKVK   67 (164)
Q Consensus        39 ~s~~~~~~g~~~~~mlrfYTDdspGLKi~   67 (164)
                      .+.+++++|+++++||||||||+|||||+
T Consensus        32 ~s~~~~~~ggss~gllrfYtdds~GlKV~   60 (87)
T 2ww9_C           32 TSTRQAGYGGSSSSILKLYTDEANGFRVD   60 (87)
T ss_dssp             --------------------------CCC
T ss_pred             CCCCCCCCCCCchhHHHHhhcCCCceEEc
Confidence            34556678889999999999999999998

>1rh5_C Secbeta; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.29.1 PDB: 1rhz_C 2yxq_C 2yxr_C 3kcr_C 3dkn_C 3bo1_C 3bo0_C

Probab=97.43  E-value=2.8e-05  Score=52.26  Aligned_cols=20  Identities=40%  Similarity=0.607  Sum_probs=8.7

Q ss_pred             CCCccceEEeecCCCCeeee
Q psy422           48 AGSGGMWRYYTDDSPGIKVK   67 (164)
Q Consensus        48 ~~~~~mlrfYTDdspGLKi~   67 (164)
                      .++.||||||+||++|+||+
T Consensus        10 ~ssaGLvryy~ee~~giKi~   29 (53)
T 1rh5_C           10 ATSAGLIRYMDETFSKIRVK   29 (53)
T ss_dssp             -----------CCCCSCCCC
T ss_pred             cccccchhhhhccCCccccC
Confidence            56678999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00