Psyllid ID: psy4297

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------7
Protein Sequence
MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLRPGLATPVLGAS
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccEEEHHHHHHHHcccccccccccccccHHHHHHHHcccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MECLVANVENIKFDIEIALEnqhdilpspfpgmdksmTAVCEFYVrgecnkdtmcplrpglatpvlgas
Flexible Loop (DISEMBL)
MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGEcnkdtmcplrpglatpvlgas
Low Complexity Region (SEG)
MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLRPGLATPVLGAS
Disordered region (IsUnstruct)
**CLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLRPG*********
Disordered Region (DISOPRED)
*ECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLRPGLATPVLG**
Disordered Region (DISEMBL)
MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLRPGLATPVLGAS
Disordered Region (DISPRO)
*ECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLRPGLATPVLG**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLRPGLATPVLGAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	69	2.2.26 [Sep-21-2011]
Q5FVR7	243	Cleavage and polyadenylat	yes	N/A	0.840	0.238	0.551	5e-13
Q8BQZ5	211	Cleavage and polyadenylat	yes	N/A	0.840	0.274	0.551	6e-13
O19137	243	Cleavage and polyadenylat	yes	N/A	0.840	0.238	0.551	8e-13
O95639	269	Cleavage and polyadenylat	no	N/A	0.840	0.215	0.551	8e-13
Q66KE3	269	Cleavage and polyadenylat	yes	N/A	0.840	0.215	0.534	3e-12
Q6DJP7	269	Cleavage and polyadenylat	N/A	N/A	0.840	0.215	0.517	9e-12
A6NMK7	179	Putative cleavage and pol	no	N/A	0.840	0.324	0.413	9e-07

>sp|Q5FVR7|CPSF4_RAT Cleavage and polyadenylation specificity factor subunit 4 OS=Rattus norvegicus GN=Cpsf4 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 43/58 (74%)

Query: 1  MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
          M+ ++A+V++IKFD+EIA+E Q    P PFPGMDKS  AVCEF+++  C K  MCP R
Sbjct: 1  MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58

Component of the cleavage and polyadenylation specificity factor (CPSF) complex that play a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. CPSF4 binds RNA polymers with a preference for poly(U).
Rattus norvegicus (taxid: 10116)

>sp|Q8BQZ5|CPSF4_MOUSE Cleavage and polyadenylation specificity factor subunit 4 OS=Mus musculus GN=Cpsf4 PE=2 SV=1

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 43/58 (74%)

Query: 1  MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
          M+ ++A+V++IKFD+EIA+E Q    P PFPGMDKS  AVCEF+++  C K  MCP R
Sbjct: 1  MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58

Component of the cleavage and polyadenylation specificity factor (CPSF) complex that play a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. CPSF4 binds RNA polymers with a preference for poly(U).

Mus musculus (taxid: 10090)

>sp|O19137|CPSF4_BOVIN Cleavage and polyadenylation specificity factor subunit 4 OS=Bos taurus GN=CPSF4 PE=2 SV=1

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 43/58 (74%)

Query: 1  MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
          M+ ++A+V++IKFD+EIA+E Q    P PFPGMDKS  AVCEF+++  C K  MCP R
Sbjct: 1  MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58

Component of the cleavage and polyadenylation specificity factor (CPSF) complex that play a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. CPSF4 binds RNA polymers with a preference for poly(U).

Bos taurus (taxid: 9913)

>sp|O95639|CPSF4_HUMAN Cleavage and polyadenylation specificity factor subunit 4 OS=Homo sapiens GN=CPSF4 PE=1 SV=1

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 32/58 (55%), Positives = 43/58 (74%)

Query: 1  MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
          M+ ++A+V++IKFD+EIA+E Q    P PFPGMDKS  AVCEF+++  C K  MCP R
Sbjct: 1  MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58

Component of the cleavage and polyadenylation specificity factor (CPSF) complex that play a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. CPSF4 binds RNA polymers with a preference for poly(U).

Homo sapiens (taxid: 9606)

>sp|Q66KE3|CPSF4_XENTR Cleavage and polyadenylation specificity factor subunit 4 OS=Xenopus tropicalis GN=cpsf4 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/58 (53%), Positives = 42/58 (72%)

Query: 1  MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
          M+ L+A V++I+FD+E+A+E Q    P PFPGMDKS  AVCEF+++  C K  MCP R
Sbjct: 1  MQELIACVDHIRFDLELAVEQQLGAQPLPFPGMDKSGAAVCEFFLKSACGKGGMCPFR 58

Component of the cleavage and polyadenylation specificity factor (CPSF) complex that play a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. Cpsf4 binds RNA polymers with a preference for poly(U).

Xenopus tropicalis (taxid: 8364)

>sp|Q6DJP7|CPSF4_XENLA Cleavage and polyadenylation specificity factor subunit 4 OS=Xenopus laevis GN=cpsf4 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 30/58 (51%), Positives = 42/58 (72%)

Query: 1  MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
          M+ L+A V++++FD+E+A+E Q    P PFPGMDKS  AVCEF+++  C K  MCP R
Sbjct: 1  MQELIACVDHLRFDLELAVEQQLGAQPLPFPGMDKSGAAVCEFFLKSACGKGGMCPFR 58

Component of the cleavage and polyadenylation specificity factor (CPSF) complex that play a key role in pre-mRNA 3'-end formation, recognizing the AAUAAA signal sequence and interacting with poly(A) polymerase and other factors to bring about cleavage and poly(A) addition. Cpsf4 binds RNA polymers with a preference for poly(U).

Xenopus laevis (taxid: 8355)

>sp|A6NMK7|CPS4L_HUMAN Putative cleavage and polyadenylation specificity factor subunit 4-like protein OS=Homo sapiens GN=CPSF4L PE=2 SV=3

 Score = 52.4 bits (124), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 33/58 (56%)

Query: 1  MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
          M+ ++A +E   F  E  +E Q      PF GMDKS +AVC F+ +G C K  +CP R
Sbjct: 1  MQEVIAGLERFTFAFEKDVEMQKGTGLLPFQGMDKSASAVCNFFTKGLCEKGKLCPFR 58

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
332028091	290	Cleavage and polyadenylation specificity	0.840	0.2	0.620	1e-14
307183125	287	Cleavage and polyadenylation specificity	0.840	0.202	0.637	2e-14
340719465	286	PREDICTED: cleavage and polyadenylation	0.840	0.202	0.655	2e-14
66517749	286	PREDICTED: cleavage and polyadenylation	0.840	0.202	0.655	2e-14
345488132	297	PREDICTED: cleavage and polyadenylation	0.840	0.195	0.620	4e-14
383862768	286	PREDICTED: cleavage and polyadenylation	0.840	0.202	0.637	4e-14
307200583	285	Cleavage and polyadenylation specificity	0.840	0.203	0.620	1e-13
239792848	148	ACYPI007246 [Acyrthosiphon pisum]	0.840	0.391	0.586	1e-12
270002662	258	hypothetical protein TcasGA2_TC005002 [T	0.840	0.224	0.610	1e-12
193624968	280	PREDICTED: cleavage and polyadenylation	0.840	0.207	0.586	1e-12

>gi|332028091|gb|EGI68142.1| Cleavage and polyadenylation specificity factor subunit 4 [Acromyrmex echinatior]

 Score = 84.0 bits (206), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 46/58 (79%)

Query: 1  MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
          MEC+VANVE+++FDIE+AL+ Q+  LP PF GMDKS+ AVC+FY +G CNK   CP R
Sbjct: 1  MECIVANVEHMRFDIEVALDEQYGALPLPFTGMDKSIAAVCQFYPKGSCNKGASCPFR 58

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307183125|gb|EFN70042.1| Cleavage and polyadenylation specificity factor subunit 4 [Camponotus floridanus]

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 37/58 (63%), Positives = 46/58 (79%)

Query: 1  MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
          MEC+VANVE+++FDIEIAL+ Q+  LP PF GMDKS+ AVC+FY RG C+K   CP R
Sbjct: 1  MECVVANVEHMRFDIEIALDEQYGALPLPFTGMDKSIAAVCQFYPRGTCSKGASCPFR 58

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340719465|ref|XP_003398174.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 4-like [Bombus terrestris] gi|350410464|ref|XP_003489048.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 4-like [Bombus impatiens]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/58 (65%), Positives = 44/58 (75%)

Query: 1  MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
          MECLVANV+N++FDIEIAL+ Q+  LP PF GMDKS  AVC+FY RG C K   CP R
Sbjct: 1  MECLVANVDNMRFDIEIALDEQYGALPLPFTGMDKSTAAVCQFYPRGTCVKGASCPFR 58

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|66517749|ref|XP_396082.2| PREDICTED: cleavage and polyadenylation specificity factor subunit 4 [Apis mellifera] gi|380029307|ref|XP_003698318.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 4-like [Apis florea]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/58 (65%), Positives = 44/58 (75%)

Query: 1  MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
          MECLVANV+N++FDIEIAL+ Q+  LP PF GMDKS  AVC+FY RG C K   CP R
Sbjct: 1  MECLVANVDNMRFDIEIALDEQYGALPLPFTGMDKSTAAVCQFYPRGTCVKGASCPFR 58

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345488132|ref|XP_001604679.2| PREDICTED: cleavage and polyadenylation specificity factor subunit 4-like [Nasonia vitripennis]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 45/58 (77%)

Query: 1  MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
          MEC+VANV+N++FDIEIAL+ Q+  LP PF GMDKS+ AVC+FY +G C K   CP R
Sbjct: 1  MECIVANVDNMRFDIEIALDEQYGALPLPFTGMDKSVAAVCQFYPKGTCTKGAACPFR 58

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862768|ref|XP_003706855.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 4-like [Megachile rotundata]

 Score = 82.0 bits (201), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 37/58 (63%), Positives = 44/58 (75%)

Query: 1  MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
          MEC+VANV+N++FDIEIAL+ Q+  LP PF GMDKS  AVC+FY RG C K   CP R
Sbjct: 1  MECIVANVDNMRFDIEIALDEQYGALPLPFTGMDKSTAAVCQFYPRGTCVKGASCPFR 58

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307200583|gb|EFN80724.1| Cleavage and polyadenylation specificity factor subunit 4 [Harpegnathos saltator]

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 44/58 (75%)

Query: 1  MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
          MEC+VANV+N++FDIE AL+ Q+  LP PF GMDKS+ AVC+FY RG C K   CP R
Sbjct: 1  MECIVANVDNMQFDIETALDEQYGALPLPFTGMDKSIAAVCQFYPRGTCVKGASCPFR 58

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|239792848|dbj|BAH72717.1| ACYPI007246 [Acyrthosiphon pisum]

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 44/58 (75%)

Query: 1  MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
          ME LVA  ++IKF++EIAL+ QH  LP PF GMDKS+ AVC FY +G C+K  +CP+R
Sbjct: 1  MELLVAGFDDIKFNVEIALDEQHGALPLPFNGMDKSIAAVCSFYPKGSCSKGALCPMR 58

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002662|gb|EEZ99109.1| hypothetical protein TcasGA2_TC005002 [Tribolium castaneum]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 44/59 (74%), Gaps = 1/59 (1%)

Query: 1  MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGE-CNKDTMCPLR 58
          MEC+VANV++IKFDIE+AL+ Q   LP PFPGMDKS+ AVC+FY   + C K   CP R
Sbjct: 1  MECIVANVDHIKFDIEVALDEQFGALPLPFPGMDKSIAAVCQFYTSIQGCQKGPQCPFR 59

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193624968|ref|XP_001945316.1| PREDICTED: cleavage and polyadenylation specificity factor subunit 4-like [Acyrthosiphon pisum]

 Score = 77.0 bits (188), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 44/58 (75%)

Query: 1  MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
          ME LVA  ++IKF++EIAL+ QH  LP PF GMDKS+ AVC FY +G C+K  +CP+R
Sbjct: 1  MELLVAGFDDIKFNVEIALDEQHGALPLPFNGMDKSIAAVCSFYPKGSCSKGALCPMR 58

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	69
UNIPROTKB|D4A905	243	Cpsf4 "Cleavage and polyadenyl	0.840	0.238	0.551	6.2e-14
UNIPROTKB|E1BV31	243	CPSF4 "Uncharacterized protein	0.840	0.238	0.551	1e-13
UNIPROTKB|O19137	243	CPSF4 "Cleavage and polyadenyl	0.840	0.238	0.551	1e-13
UNIPROTKB|E2RBK7	212	CPSF4 "Uncharacterized protein	0.840	0.273	0.551	1e-13
UNIPROTKB|J9P398	269	CPSF4 "Uncharacterized protein	0.840	0.215	0.551	1e-13
UNIPROTKB|C9JEV9	211	CPSF4 "Cleavage and polyadenyl	0.840	0.274	0.551	1e-13
UNIPROTKB|O95639	269	CPSF4 "Cleavage and polyadenyl	0.840	0.215	0.551	1e-13
UNIPROTKB|F1REX3	269	LOC100518830 "Uncharacterized	0.840	0.215	0.551	1e-13
MGI|MGI:1861602	211	Cpsf4 "cleavage and polyadenyl	0.840	0.274	0.551	1e-13
RGD|620440	243	Cpsf4 "cleavage and polyadenyl	0.840	0.238	0.551	1e-13

UNIPROTKB|D4A905 Cpsf4 "Cleavage and polyadenylation-specificity factor subunit 4" [Rattus norvegicus (taxid:10116)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 32/58 (55%), Positives = 44/58 (75%)

Query:     1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
             M+ ++A+V++IKFD+ IA+E Q    P PFPGMDKS TAVCEF+++  C K +MCP R
Sbjct:     1 MQEIIASVDHIKFDLAIAVEQQLGAQPLPFPGMDKSGTAVCEFFLKAACGKGSMCPFR 58

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E1BV31 CPSF4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 32/58 (55%), Positives = 43/58 (74%)

Query:     1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
             M+ L+A+V++IKFD+E+A+E Q    P PFPGMDKS  AVCEF+++  C K  MCP R
Sbjct:     1 MQELIASVDHIKFDLELAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=IEA

UNIPROTKB|O19137 CPSF4 "Cleavage and polyadenylation specificity factor subunit 4" [Bos taurus (taxid:9913)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 32/58 (55%), Positives = 43/58 (74%)

Query:     1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
             M+ ++A+V++IKFD+EIA+E Q    P PFPGMDKS  AVCEF+++  C K  MCP R
Sbjct:     1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=ISS

GO:0005739 "mitochondrion" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|E2RBK7 CPSF4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 32/58 (55%), Positives = 43/58 (74%)

Query:     1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
             M+ ++A+V++IKFD+EIA+E Q    P PFPGMDKS  AVCEF+++  C K  MCP R
Sbjct:     1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|J9P398 CPSF4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 32/58 (55%), Positives = 43/58 (74%)

Query:     1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
             M+ ++A+V++IKFD+EIA+E Q    P PFPGMDKS  AVCEF+++  C K  MCP R
Sbjct:     1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|C9JEV9 CPSF4 "Cleavage and polyadenylation-specificity factor subunit 4" [Homo sapiens (taxid:9606)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 32/58 (55%), Positives = 43/58 (74%)

Query:     1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
             M+ ++A+V++IKFD+EIA+E Q    P PFPGMDKS  AVCEF+++  C K  MCP R
Sbjct:     1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|O95639 CPSF4 "Cleavage and polyadenylation specificity factor subunit 4" [Homo sapiens (taxid:9606)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 32/58 (55%), Positives = 43/58 (74%)

Query:     1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
             M+ ++A+V++IKFD+EIA+E Q    P PFPGMDKS  AVCEF+++  C K  MCP R
Sbjct:     1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=IDA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0019048 "virus-host interaction" evidence=TAS

GO:0019054 "modulation by virus of host cellular process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0046778 "modification by virus of host mRNA processing" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|F1REX3 LOC100518830 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 32/58 (55%), Positives = 43/58 (74%)

Query:     1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
             M+ ++A+V++IKFD+EIA+E Q    P PFPGMDKS  AVCEF+++  C K  MCP R
Sbjct:     1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:1861602 Cpsf4 "cleavage and polyadenylation specific factor 4" [Mus musculus (taxid:10090)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 32/58 (55%), Positives = 43/58 (74%)

Query:     1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
             M+ ++A+V++IKFD+EIA+E Q    P PFPGMDKS  AVCEF+++  C K  MCP R
Sbjct:     1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|620440 Cpsf4 "cleavage and polyadenylation specific factor 4" [Rattus norvegicus (taxid:10116)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 32/58 (55%), Positives = 43/58 (74%)

Query:     1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLR 58
             M+ ++A+V++IKFD+EIA+E Q    P PFPGMDKS  AVCEF+++  C K  MCP R
Sbjct:     1 MQEIIASVDHIKFDLEIAVEQQLGAQPLPFPGMDKSGAAVCEFFLKAACGKGGMCPFR 58

GO:0003723 "RNA binding" evidence=IEA

GO:0005847 "mRNA cleavage and polyadenylation specificity factor complex" evidence=ISS

GO:0006397 "mRNA processing" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O19137	CPSF4_BOVIN	No assigned EC number	0.5517	0.8405	0.2386	yes	N/A
Q8BQZ5	CPSF4_MOUSE	No assigned EC number	0.5517	0.8405	0.2748	yes	N/A
Q5FVR7	CPSF4_RAT	No assigned EC number	0.5517	0.8405	0.2386	yes	N/A
Q66KE3	CPSF4_XENTR	No assigned EC number	0.5344	0.8405	0.2156	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	69
KOG1040|consensus	325		98.9
KOG0153|consensus	377		98.48
smart00356	27	ZnF_C3H1 zinc finger.	98.17
PF00642	27	zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and si	97.76
PF14608	19	zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type	97.24
KOG1040|consensus	325		96.11
PF10650	23	zf-C3H1: Putative zinc-finger domain; InterPro: IP	94.49
KOG1763|consensus	343		94.15
KOG1677|consensus	332		93.69
KOG2202|consensus	260		92.36
KOG2494|consensus	331		91.51
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	90.52
KOG4791|consensus	667		88.97
KOG2185|consensus	486		87.32
COG5084	285	YTH1 Cleavage and polyadenylation specificity fact	81.35
KOG4791|consensus	667		80.11

>KOG1040|consensus

Probab=98.90  E-value=1.1e-09  Score=83.41  Aligned_cols=67  Identities=24%  Similarity=0.383  Sum_probs=62.6

Q ss_pred             CcccccccCCcchhHHHHHHhhcCCCCCCCCCCCcccccccccccc--ccCCCCCCCCCCCCC---CCcccc
Q psy4297           1 MECLVANVENIKFDIEIALENQHDILPSPFPGMDKSMTAVCEFYVR--GECNKDTMCPLRPGL---ATPVLG   67 (69)
Q Consensus         1 M~~~ia~v~~~~Fd~E~~le~Q~G~~~lPF~gmDks~a~vC~ff~~--G~C~kG~~CPfRH~~---gek~Vv   67 (69)
                      |+....+.+...|++|..+++|.|+-+.||+++|+++.++|.|+.+  -.|.+|+.||.+|..   ++++||
T Consensus         8 ~~~p~~~~~~~~~~~e~~~~~e~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   79 (325)
T KOG1040|consen    8 TELPMLDDDSLKTDFEKSLDREPGASLAPFRVRDESGRATCEFNESREKPCERGPICPKSHNDVSDSRGKVV   79 (325)
T ss_pred             cccCcccccccccccchhhhhcccccccccccccccccchhcccccCCCCccCCCCCccccCCccccCCcee
Confidence            6788899999999999999999999999999999999999999988  789999999999999   778776

>KOG0153|consensus

Probab=98.48  E-value=5.6e-08  Score=75.87  Aligned_cols=37  Identities=27%  Similarity=0.723  Sum_probs=33.2

Q ss_pred             CCCCCCCCCCCccccccccccccccCCCCCCCCCCCCCC
Q psy4297          24 DILPSPFPGMDKSMTAVCEFYVRGECNKDTMCPLRPGLA   62 (69)
Q Consensus        24 G~~~lPF~gmDks~a~vC~ff~~G~C~kG~~CPfRH~~g   62 (69)
                      -++..|+++  +|.+.||+||++|+|.||++|||||++.
T Consensus       149 l~rt~p~yk--rn~p~Icsf~v~geckRG~ec~yrhEkp  185 (377)
T KOG0153|consen  149 LQRTTPYYK--RNRPHICSFFVKGECKRGAECPYRHEKP  185 (377)
T ss_pred             HhccCcccc--CCCCccccceeeccccccccccccccCC
Confidence            345678886  8999999999999999999999999986

>smart00356 ZnF_C3H1 zinc finger

Probab=98.17  E-value=1.2e-06  Score=43.19  Aligned_cols=25  Identities=32%  Similarity=0.735  Sum_probs=22.1

Q ss_pred             ccccccccccccCCCCCCCCCCCCC
Q psy4297          37 MTAVCEFYVRGECNKDTMCPLRPGL   61 (69)
Q Consensus        37 ~a~vC~ff~~G~C~kG~~CPfRH~~   61 (69)
                      ...+|.+|..|.|.+|..|+|.|..
T Consensus         3 k~~~C~~~~~g~C~~g~~C~~~H~~   27 (27)
T smart00356        3 KTELCKFFKRGYCPYGDRCKFAHPL   27 (27)
T ss_pred             CCCcCcCccCCCCCCCCCcCCCCcC
Confidence            4568999988999999999999963

>PF00642 zf-CCCH: Zinc finger C-x8-C-x5-C-x3-H type (and similar); InterPro: IPR000571 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.76  E-value=6.2e-06  Score=42.25  Aligned_cols=24  Identities=33%  Similarity=0.852  Sum_probs=18.6

Q ss_pred             ccccccccc-ccCCCCCCCCCCCCC
Q psy4297          38 TAVCEFYVR-GECNKDTMCPLRPGL   61 (69)
Q Consensus        38 a~vC~ff~~-G~C~kG~~CPfRH~~   61 (69)
                      ..+|.+|.+ |.|.+|+.|+|.|..
T Consensus         3 ~~~C~~f~~~g~C~~G~~C~f~H~~   27 (27)
T PF00642_consen    3 TKLCRFFMRTGTCPFGDKCRFAHGE   27 (27)
T ss_dssp             SSB-HHHHHTS--TTGGGSSSBSSG
T ss_pred             cccChhhccCCccCCCCCcCccCCC
Confidence            478999988 999999999999963

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents C-x8-C-x5-C-x3-H (CCCH) type Zinc finger (Znf) domains. Proteins containing CCCH Znf domains include Znf proteins from eukaryotes involved in cell cycle or growth phase-related regulation, e.g. human TIS11B (butyrate response factor 1), a probable regulatory protein involved in regulating the response to growth factors, and the mouse TTP growth factor-inducible nuclear protein, which has the same function. The mouse TTP protein is induced by growth factors. Another protein containing this domain is the human splicing factor U2AF 35kDa subunit, which plays a critical role in both constitutive and enhancer-dependent splicing by mediating essential protein-protein interactions and protein-RNA interactions required for 3' splice site selection. It has been shown that different CCCH-type Znf proteins interact with the 3'-untranslated region of various mRNA [, ]. This type of Znf is very often present in two copies. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding; PDB: 1M9O_A 1RGO_A 2CQE_A 2FC6_A 2D9M_A 2E5S_A 2RHK_C 2D9N_A 3D2S_A 3D2Q_C ....

>PF14608 zf-CCCH_2: Zinc finger C-x8-C-x5-C-x3-H type

Probab=97.24  E-value=0.00017  Score=34.74  Aligned_cols=18  Identities=28%  Similarity=0.794  Sum_probs=16.1

Q ss_pred             cccccccccCCCCCCCCCCC
Q psy4297          40 VCEFYVRGECNKDTMCPLRP   59 (69)
Q Consensus        40 vC~ff~~G~C~kG~~CPfRH   59 (69)
                      .|.||..  |+.|+.|||+|
T Consensus         1 ~Ck~~~~--C~~~~~C~f~H   18 (19)
T PF14608_consen    1 PCKFGPN--CTNGDNCPFSH   18 (19)
T ss_pred             CCcCcCC--CCCCCcCccCC
Confidence            4888877  99999999999

>KOG1040|consensus

Probab=96.11  E-value=0.002  Score=49.43  Aligned_cols=27  Identities=26%  Similarity=0.624  Sum_probs=25.1

Q ss_pred             ccccccccccccccCCCCCCCCCCCCC
Q psy4297          35 KSMTAVCEFYVRGECNKDTMCPLRPGL   61 (69)
Q Consensus        35 ks~a~vC~ff~~G~C~kG~~CPfRH~~   61 (69)
                      +++.-||.+|++|.|.+|..|.|-|+-
T Consensus        74 ~~~~~vcK~~l~glC~kgD~C~Flhe~  100 (325)
T KOG1040|consen   74 SRGKVVCKHWLRGLCKKGDQCEFLHEY  100 (325)
T ss_pred             cCCceeehhhhhhhhhccCcCcchhhh
Confidence            778899999999999999999999975

>PF10650 zf-C3H1: Putative zinc-finger domain; InterPro: IPR019607 This domain is conserved in fungi and might be a zinc-finger domain as it contains three conserved Cs and an H in the C-x8-C-x5-C-x3-H conformation typical of a zinc-finger

Probab=94.49  E-value=0.021  Score=29.12  Aligned_cols=22  Identities=23%  Similarity=0.617  Sum_probs=18.8

Q ss_pred             ccccccccc-cCCCCCCCCCCCCC
Q psy4297          39 AVCEFYVRG-ECNKDTMCPLRPGL   61 (69)
Q Consensus        39 ~vC~ff~~G-~C~kG~~CPfRH~~   61 (69)
                      +.|.|.+.| .|+. ..|+|.|.+
T Consensus         1 ~lC~yEl~Gg~Cnd-~~C~~QHfr   23 (23)
T PF10650_consen    1 PLCPYELTGGVCND-PDCEFQHFR   23 (23)
T ss_pred             CCCccccCCCeeCC-CCCCccccC
Confidence            469999998 9985 899999974

>KOG1763|consensus

Probab=94.15  E-value=0.016  Score=45.22  Aligned_cols=25  Identities=36%  Similarity=0.891  Sum_probs=22.9

Q ss_pred             cccccccccccCCCCCCCCCCCCCC
Q psy4297          38 TAVCEFYVRGECNKDTMCPLRPGLA   62 (69)
Q Consensus        38 a~vC~ff~~G~C~kG~~CPfRH~~g   62 (69)
                      +-||-||.+|+|++|.-|-|.|...
T Consensus        92 SvvCafFk~g~C~KG~kCKFsHdl~  116 (343)
T KOG1763|consen   92 SVVCAFFKQGTCTKGDKCKFSHDLA  116 (343)
T ss_pred             HHHHHHHhccCCCCCCcccccchHH
Confidence            5799999999999999999999763

>KOG1677|consensus

Probab=93.69  E-value=0.043  Score=40.01  Aligned_cols=31  Identities=23%  Similarity=0.454  Sum_probs=27.6

Q ss_pred             cccccccccccc-ccCCCCCCCCCCCCCCCcc
Q psy4297          35 KSMTAVCEFYVR-GECNKDTMCPLRPGLATPV   65 (69)
Q Consensus        35 ks~a~vC~ff~~-G~C~kG~~CPfRH~~gek~   65 (69)
                      |-+...|..|.+ |.|..|..|-|.|...+.+
T Consensus       174 ~~kt~lC~~f~~tG~C~yG~rC~F~H~~~~~~  205 (332)
T KOG1677|consen  174 KYKTKLCPKFQKTGLCKYGSRCRFIHGEPEDR  205 (332)
T ss_pred             CCCCcCCCccccCCCCCCCCcCeecCCCcccc
Confidence            677899999998 9999999999999987654

>KOG2202|consensus

Probab=92.36  E-value=0.057  Score=40.94  Aligned_cols=25  Identities=24%  Similarity=0.534  Sum_probs=22.9

Q ss_pred             ccccccccccccCCCCCCCCCCCCC
Q psy4297          37 MTAVCEFYVRGECNKDTMCPLRPGL   61 (69)
Q Consensus        37 ~a~vC~ff~~G~C~kG~~CPfRH~~   61 (69)
                      .-++|.+|.++.|++|..|-|-|..
T Consensus       151 rea~C~~~e~~~C~rG~~CnFmH~k  175 (260)
T KOG2202|consen  151 REAICGQFERTECSRGGACNFMHVK  175 (260)
T ss_pred             hhhhhcccccccCCCCCcCcchhhh
Confidence            3589999999999999999999975

>KOG2494|consensus

Probab=91.51  E-value=0.065  Score=41.82  Aligned_cols=25  Identities=20%  Similarity=0.563  Sum_probs=22.5

Q ss_pred             ccccccccccccCCCCCC-CCCCCCC
Q psy4297          37 MTAVCEFYVRGECNKDTM-CPLRPGL   61 (69)
Q Consensus        37 ~a~vC~ff~~G~C~kG~~-CPfRH~~   61 (69)
                      .-.||+=|.||.|+||+. |-|+|=.
T Consensus        36 ~~eVCReF~rn~C~R~d~~CkfaHP~   61 (331)
T KOG2494|consen   36 TLEVCREFLRNTCSRGDRECKFAHPP   61 (331)
T ss_pred             HHHHHHHHHhccccCCCccccccCCC
Confidence            358999999999999999 9999954

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=90.52  E-value=0.19  Score=38.29  Aligned_cols=34  Identities=26%  Similarity=0.629  Sum_probs=25.8

Q ss_pred             CCCCCCC--ccccccccccccccCCCCCCCCCCCCC
Q psy4297          28 SPFPGMD--KSMTAVCEFYVRGECNKDTMCPLRPGL   61 (69)
Q Consensus        28 lPF~gmD--ks~a~vC~ff~~G~C~kG~~CPfRH~~   61 (69)
                      .|+.+++  -+..-+|.||..|.|.+|..|+|-|..
T Consensus        92 ~~~~~~~~~~~s~V~c~~~~~g~c~s~~~c~~lh~~  127 (285)
T COG5084          92 TPNNHVNPVLSSSVVCKFFLRGLCKSGFSCEFLHEY  127 (285)
T ss_pred             CCccccCccccCCcccchhccccCcCCCccccccCC
Confidence            3555555  356678999999999999999888864

>KOG4791|consensus

Probab=88.97  E-value=0.15  Score=42.57  Aligned_cols=22  Identities=32%  Similarity=0.810  Sum_probs=16.2

Q ss_pred             ccccccccccCCCCCCCCCCCC
Q psy4297          39 AVCEFYVRGECNKDTMCPLRPG   60 (69)
Q Consensus        39 ~vC~ff~~G~C~kG~~CPfRH~   60 (69)
                      ..|.||....|.++..|||||.
T Consensus         4 ~dcyff~ys~cKk~d~c~~rh~   25 (667)
T KOG4791|consen    4 EDCYFFFYSTCKKGDSCPFRHC   25 (667)
T ss_pred             ccchhhhhhhhhccCcCcchhh
Confidence            4577777777777777777775

>KOG2185|consensus

Probab=87.32  E-value=0.26  Score=40.10  Aligned_cols=22  Identities=27%  Similarity=0.848  Sum_probs=20.6

Q ss_pred             ccccccccccCCCCCCCCCCCC
Q psy4297          39 AVCEFYVRGECNKDTMCPLRPG   60 (69)
Q Consensus        39 ~vC~ff~~G~C~kG~~CPfRH~   60 (69)
                      ..|.||+.|.|..|..|-|.|-
T Consensus       141 kpC~ffLeg~CRF~enCRfSHG  162 (486)
T KOG2185|consen  141 KPCKFFLEGRCRFGENCRFSHG  162 (486)
T ss_pred             ccchHhhccccccCcccccccC
Confidence            5799999999999999999995

>COG5084 YTH1 Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

Probab=81.35  E-value=1.2  Score=34.09  Aligned_cols=27  Identities=15%  Similarity=0.433  Sum_probs=21.4

Q ss_pred             ccccccc-ccccCCCCCCCCCCCCCCCc
Q psy4297          38 TAVCEFY-VRGECNKDTMCPLRPGLATP   64 (69)
Q Consensus        38 a~vC~ff-~~G~C~kG~~CPfRH~~gek   64 (69)
                      ..-|.+| ..|.|..|..|++-|+..++
T Consensus       134 ~~~c~~Fs~~G~cs~g~~c~~~h~dp~~  161 (285)
T COG5084         134 GPPCRSFSLKGSCSSGPSCGYSHIDPDS  161 (285)
T ss_pred             CCCcccccccceeccCCCCCccccCccc
Confidence            6778888 77888888888888886443

>KOG4791|consensus

Probab=80.11  E-value=0.63  Score=38.94  Aligned_cols=26  Identities=23%  Similarity=0.664  Sum_probs=19.4

Q ss_pred             cccccccccccCCCCCCCCCCCCCCCc
Q psy4297          38 TAVCEFYVRGECNKDTMCPLRPGLATP   64 (69)
Q Consensus        38 a~vC~ff~~G~C~kG~~CPfRH~~gek   64 (69)
                      --+|.+|+.+.|-+ ..|||||..-++
T Consensus        32 ~t~C~~w~~~~~C~-k~C~YRHSe~~~   57 (667)
T KOG4791|consen   32 ETVCTLWQEGRCCR-KVCRYRHSEIDK   57 (667)
T ss_pred             cchhhhhhhcCccc-ccccchhhHHhh
Confidence            46899999986554 399999975443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	69
3u1l_A	240	PRE-mRNA-splicing factor CWC2; CSMP, zinc finger;	98.27
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	98.12
2rhk_C	72	Cleavage and polyadenylation specificity factor su	98.08
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	98.05
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	97.78
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	97.77
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	97.47
2rhk_C	72	Cleavage and polyadenylation specificity factor su	97.45
2d9n_A	77	Cleavage and polyadenylation specificity factor, 3	97.42
3d2q_A	70	Muscleblind-like protein 1; tandem zinc finger dom	97.4
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	97.31
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	97.23
2e5s_A	98	Otthump00000018578; ZF-CCCHX2 domain, muscleblind-	97.21
3d2n_A	83	Muscleblind-like protein 1; tandem zinc finger dom	96.97
2cqe_A	98	KIAA1064 protein; CCCH zinc-finger, structural gen	96.63
1m9o_A	77	Tristetraproline; Cys3His type zinc finger, metal	96.25
2rpp_A	89	Muscleblind-like protein 2; zinc finger domain, C3	95.89
2fc6_A	50	Nuclear, target of EGR1, member 1; structure genom	95.68
2d9m_A	69	Zinc finger CCCH-type domain containing protein 7A	93.03
2lhn_A	80	Nuclear polyadenylated RNA-binding protein NAB2; n	84.91

>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A

Probab=98.27  E-value=1.7e-07  Score=66.79  Aligned_cols=29  Identities=17%  Similarity=0.465  Sum_probs=25.6

Q ss_pred             ccccccccccccccCCCCCCCCCCCCCCC
Q psy4297          35 KSMTAVCEFYVRGECNKDTMCPLRPGLAT   63 (69)
Q Consensus        35 ks~a~vC~ff~~G~C~kG~~CPfRH~~ge   63 (69)
                      ++.+.+|.||.||.|.+|..|||+|...+
T Consensus        67 ~~~~~~C~ffakG~C~~G~~C~y~H~lPt   95 (240)
T 3u1l_A           67 DGQLFFCLFFAKGMCCLGPKCEYLHHIPD   95 (240)
T ss_dssp             TTCCSBCHHHHTTCCSCGGGCSSBBSCCC
T ss_pred             CCCCeEcCccccCCCCCCCCCCccCCCCC
Confidence            45678999999999999999999998654

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=98.12  E-value=8.7e-07  Score=52.59  Aligned_cols=24  Identities=33%  Similarity=0.718  Sum_probs=19.0

Q ss_pred             cccccccccccCCCCC-CCCCCCCC
Q psy4297          38 TAVCEFYVRGECNKDT-MCPLRPGL   61 (69)
Q Consensus        38 a~vC~ff~~G~C~kG~-~CPfRH~~   61 (69)
                      .+||.+|.+|.|++|+ .|||.|..
T Consensus         6 ~~vC~~f~~G~C~rg~~~C~f~H~~   30 (70)
T 3d2q_A            6 LEVCREYQRGNCNRGENDCRFAHPA   30 (70)
T ss_dssp             EEBCHHHHTTCCSSCTTTCSSBCCC
T ss_pred             chhCHHHhcCCCCCCCCCCCCccCc
Confidence            4688888888888888 48888854

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=98.08  E-value=1.3e-06  Score=52.53  Aligned_cols=28  Identities=29%  Similarity=0.642  Sum_probs=23.0

Q ss_pred             ccccccccccccccCCCCCCCCCCCCCC
Q psy4297          35 KSMTAVCEFYVRGECNKDTMCPLRPGLA   62 (69)
Q Consensus        35 ks~a~vC~ff~~G~C~kG~~CPfRH~~g   62 (69)
                      .....||.||++|.|.+|..|+|.|...
T Consensus        13 ~~k~~vCk~fl~G~C~~G~~C~fsH~~~   40 (72)
T 2rhk_C           13 GEKTVVCKHWLRGLCKKGDQCEFLHEYD   40 (72)
T ss_dssp             CCCCSBCHHHHTTCCCCGGGSSSBCSCC
T ss_pred             CCcCeeCHHHhcCCCCCCCCCCCccccc
Confidence            4456789999999999998899999864

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.05  E-value=2.3e-06  Score=51.43  Aligned_cols=27  Identities=30%  Similarity=0.669  Sum_probs=20.0

Q ss_pred             ccccccccccccCCCCCCCCCCCCCCC
Q psy4297          37 MTAVCEFYVRGECNKDTMCPLRPGLAT   63 (69)
Q Consensus        37 ~a~vC~ff~~G~C~kG~~CPfRH~~ge   63 (69)
                      ...+|.||++|.|.+|..|+|.|....
T Consensus         9 k~~~C~~fl~G~C~~G~~C~fsH~~~~   35 (77)
T 2d9n_A            9 KTVVCKHWLRGLCKKGDQCEFLHEYDM   35 (77)
T ss_dssp             TTSBCHHHHTTCCSCTTSSSSBCSCCT
T ss_pred             cceeCHhHccCcCCCCCCCCCcccccc
Confidence            446788888888888888888887543

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.78  E-value=4.7e-06  Score=52.79  Aligned_cols=36  Identities=17%  Similarity=0.372  Sum_probs=29.0

Q ss_pred             CCCCCCCCccccccccccccccCCCCC-CCCCCCCCC
Q psy4297          27 PSPFPGMDKSMTAVCEFYVRGECNKDT-MCPLRPGLA   62 (69)
Q Consensus        27 ~lPF~gmDks~a~vC~ff~~G~C~kG~-~CPfRH~~g   62 (69)
                      ..+.-..|.....||.+|++|.|+||. .|+|.|...
T Consensus         9 ~~~~K~~~~~k~~VCr~FlrG~C~rgd~~C~FsH~~~   45 (98)
T 2e5s_A            9 TATQKLLRTDKLEVCREFQRGNCARGETDCRFAHPAD   45 (98)
T ss_dssp             SCCCCCCCSSEEEBCSHHHHTCCSSHHHHCSSBCCSS
T ss_pred             cccccccChhhhhhhHHHhcCcCCCCCCCCCCcCCch
Confidence            345666677778899999999999998 799999864

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=97.77  E-value=1.1e-05  Score=50.85  Aligned_cols=24  Identities=33%  Similarity=0.937  Sum_probs=20.1

Q ss_pred             ccccccccccccCCCCCCCCCCCC
Q psy4297          37 MTAVCEFYVRGECNKDTMCPLRPG   60 (69)
Q Consensus        37 ~a~vC~ff~~G~C~kG~~CPfRH~   60 (69)
                      ...+|.||.+|.|.+|..|||.|.
T Consensus        12 k~~lC~~f~~G~C~~G~~C~f~H~   35 (98)
T 2cqe_A           12 KRELCKFYITGFCARAENCPYMHG   35 (98)
T ss_dssp             CCSBCTTTTTTCCSCSTTCSSBSS
T ss_pred             CCccCcccccCcCCCCCCCCCCCC
Confidence            457888888888888888888886

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=97.47  E-value=9.9e-05  Score=43.09  Aligned_cols=29  Identities=28%  Similarity=0.674  Sum_probs=23.9

Q ss_pred             ccccccccccc-cccCCCCCCCCCCCCCCC
Q psy4297          35 KSMTAVCEFYV-RGECNKDTMCPLRPGLAT   63 (69)
Q Consensus        35 ks~a~vC~ff~-~G~C~kG~~CPfRH~~ge   63 (69)
                      +....+|.+|. .|.|..|..|.|-|...+
T Consensus         9 ~~kt~~C~~f~~~G~C~~G~~C~f~H~~~e   38 (77)
T 1m9o_A            9 RYKTELCRTYSESGRCRYGAKCQFAHGLGE   38 (77)
T ss_dssp             CCCSCCCSGGGGTSCCTTTTTCSSCSSSCC
T ss_pred             CccchhCHHhhhCCCcCCCCCccCCCCChh
Confidence            45668999885 789999999999998765

>2rhk_C Cleavage and polyadenylation specificity factor subunit 4; influenza A, nonstructural protein, viral protein: HOST complex, Zn finger; 1.95A {Homo sapiens}

Probab=97.45  E-value=4.9e-05  Score=45.47  Aligned_cols=28  Identities=29%  Similarity=0.660  Sum_probs=23.9

Q ss_pred             ccccccccccc-ccCCCCCCCCCCCCCCCc
Q psy4297          36 SMTAVCEFYVR-GECNKDTMCPLRPGLATP   64 (69)
Q Consensus        36 s~a~vC~ff~~-G~C~kG~~CPfRH~~gek   64 (69)
                      +...+|.||++ |.|.+ ..|||+|...+.
T Consensus        42 ~~~~~C~~f~~~G~C~~-~~C~y~H~~p~~   70 (72)
T 2rhk_C           42 TKMSECYFYSKFGECSN-KECPFLHIDPES   70 (72)
T ss_dssp             TSCCBCHHHHHHSCCSB-TTCCSBCCCCC-
T ss_pred             ccCCcccccCCCCCCCC-CCeeccCCCccc
Confidence            45679999999 99999 999999987653

>2d9n_A Cleavage and polyadenylation specificity factor, 30 kDa subunit; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.42  E-value=6.3e-05  Score=45.07  Aligned_cols=26  Identities=31%  Similarity=0.694  Sum_probs=22.8

Q ss_pred             cccccccccc-ccCCCCCCCCCCCCCCC
Q psy4297          37 MTAVCEFYVR-GECNKDTMCPLRPGLAT   63 (69)
Q Consensus        37 ~a~vC~ff~~-G~C~kG~~CPfRH~~ge   63 (69)
                      ...+|.||++ |.|. |..|+|+|...+
T Consensus        37 ~~~~C~~f~~~G~C~-~~~C~f~H~~~~   63 (77)
T 2d9n_A           37 KMPECYFYSKFGECS-NKECPFLHIDPE   63 (77)
T ss_dssp             TSCBCHHHHHTCCCC-CSSCSSBCCCTT
T ss_pred             cCCCCcccCCCCccC-CCCeeccCCCcc
Confidence            3569999999 9999 899999998754

>3d2q_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 1.50A {Homo sapiens} PDB: 3d2s_A

Probab=97.40  E-value=5.4e-05  Score=44.74  Aligned_cols=26  Identities=23%  Similarity=0.635  Sum_probs=23.0

Q ss_pred             ccccccccccccccCCCCCCCCCCCCC
Q psy4297          35 KSMTAVCEFYVRGECNKDTMCPLRPGL   61 (69)
Q Consensus        35 ks~a~vC~ff~~G~C~kG~~CPfRH~~   61 (69)
                      .....+|.+|++|.|++| .|+|.|..
T Consensus        39 ~~~~~vC~~flkG~C~r~-~C~y~H~~   64 (70)
T 3d2q_A           39 DNTVTVCMDYIKGRCSRE-KCKYFHPP   64 (70)
T ss_dssp             TTEEEBCHHHHTTCCCCT-TCCSBCCC
T ss_pred             CCcceeccccCcCCCCCC-CcCeeCCH
Confidence            345789999999999999 99999975

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=97.31  E-value=0.0001  Score=45.49  Aligned_cols=25  Identities=24%  Similarity=0.592  Sum_probs=22.6

Q ss_pred             cccccccccccCCCCC-CCCCCCCCC
Q psy4297          38 TAVCEFYVRGECNKDT-MCPLRPGLA   62 (69)
Q Consensus        38 a~vC~ff~~G~C~kG~-~CPfRH~~g   62 (69)
                      -+||.+|++|.|++|. .|+|.|...
T Consensus         9 ~~VCr~FlrG~C~r~d~~C~f~H~~~   34 (83)
T 3d2n_A            9 LEVCREFQRGTCSRPDTECKFAHPSK   34 (83)
T ss_dssp             EEBCTTGGGTCCCSCTTTCSSBCCCT
T ss_pred             chhcHHHhcCCCCCCCCCCCCcCCCc
Confidence            5899999999999995 999999974

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=97.23  E-value=0.00021  Score=44.77  Aligned_cols=26  Identities=23%  Similarity=0.592  Sum_probs=22.9

Q ss_pred             ccccccccccccCCCCC-CCCCCCCCC
Q psy4297          37 MTAVCEFYVRGECNKDT-MCPLRPGLA   62 (69)
Q Consensus        37 ~a~vC~ff~~G~C~kG~-~CPfRH~~g   62 (69)
                      ..+||..|++|.|+||. .|+|.|...
T Consensus        16 ~~~VCrdFlrG~C~r~d~~CrfsH~~~   42 (89)
T 2rpp_A           16 TLEVCRQFQRGTCSRSDEECKFAHPPK   42 (89)
T ss_dssp             EECBCHHHHHTCCCCCTTTSSSBCCCS
T ss_pred             hhhhchHHhcCCCCCCCCCCCCcCCCc
Confidence            46899999999999997 999999865

>2e5s_A Otthump00000018578; ZF-CCCHX2 domain, muscleblind-like 2, isoform 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.21  E-value=0.00011  Score=46.44  Aligned_cols=27  Identities=26%  Similarity=0.603  Sum_probs=23.8

Q ss_pred             ccccccccccccccCCCCCCCCCCCCCC
Q psy4297          35 KSMTAVCEFYVRGECNKDTMCPLRPGLA   62 (69)
Q Consensus        35 ks~a~vC~ff~~G~C~kG~~CPfRH~~g   62 (69)
                      .....+|.+|++|.|.+| .|||.|...
T Consensus        53 ~~~~~vC~~flkG~C~r~-~C~y~H~~~   79 (98)
T 2e5s_A           53 DNTVTVCMDYIKGRCMRE-KCKYFHPPA   79 (98)
T ss_dssp             TCEEEBCHHHHHTCCCCT-TCCSBCCCH
T ss_pred             CCccccchhhccCCCCCC-CcCccCChH
Confidence            356789999999999999 999999863

>3d2n_A Muscleblind-like protein 1; tandem zinc finger domain, alternative splicing, metal- binding, nucleus, RNA-binding, zinc, zinc-finger, metal binding; 2.70A {Homo sapiens}

Probab=96.97  E-value=0.00022  Score=43.99  Aligned_cols=26  Identities=15%  Similarity=0.396  Sum_probs=22.9

Q ss_pred             ccccccccccccccCCCCCCCCCCCCC
Q psy4297          35 KSMTAVCEFYVRGECNKDTMCPLRPGL   61 (69)
Q Consensus        35 ks~a~vC~ff~~G~C~kG~~CPfRH~~   61 (69)
                      .....+|..|++|.|.++ .|||.|..
T Consensus        40 ~~~~~vC~dflkG~C~r~-~C~y~H~~   65 (83)
T 3d2n_A           40 NGRVIACFDSLKGRCSRE-NCKYLHPP   65 (83)
T ss_dssp             TTEEECCHHHHTTCCCCS-SCSSCCCC
T ss_pred             CCceeehhHhhhccccCC-CcceeCCh
Confidence            345799999999999998 89999975

>2cqe_A KIAA1064 protein; CCCH zinc-finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.66.1.1 g.66.1.1

Probab=96.63  E-value=0.00072  Score=42.39  Aligned_cols=25  Identities=20%  Similarity=0.490  Sum_probs=22.0

Q ss_pred             cccccccc-cccCCCCCCCCCCCCCC
Q psy4297          38 TAVCEFYV-RGECNKDTMCPLRPGLA   62 (69)
Q Consensus        38 a~vC~ff~-~G~C~kG~~CPfRH~~g   62 (69)
                      ..+|.||. +|.|.+|..|+|.|..-
T Consensus        36 ~~~C~~f~~~G~C~~G~~C~f~H~~~   61 (98)
T 2cqe_A           36 DFPCKLYHTTGNCINGDDCMFSHDPL   61 (98)
T ss_dssp             SSBCSHHHHTSCCSSCTTCSSBCCCC
T ss_pred             CCcCcCcccCCcCCCCCCCcccCCCC
Confidence            47899995 89999999999999853

>1m9o_A Tristetraproline; Cys3His type zinc finger, metal binding protein; NMR {Mus musculus} SCOP: g.66.1.1 PDB: 1rgo_A

Probab=96.25  E-value=0.00071  Score=39.38  Aligned_cols=27  Identities=22%  Similarity=0.567  Sum_probs=0.0

Q ss_pred             cccccc-ccccccCCCCCCCCCCCCCCC
Q psy4297          37 MTAVCE-FYVRGECNKDTMCPLRPGLAT   63 (69)
Q Consensus        37 ~a~vC~-ff~~G~C~kG~~CPfRH~~ge   63 (69)
                      ...+|. |+..|.|..|..|.|.|...|
T Consensus        49 k~~~C~~f~~~G~C~~G~~C~f~H~~~e   76 (77)
T 1m9o_A           49 KTELCHKFKLQGRCPYGSRCHFIHNPTE   76 (77)
T ss_dssp             ----------------------------
T ss_pred             cCCcccchhhCcCCCCcCcCCCCCCCCC
Confidence            357997 456799999999999998765

>2rpp_A Muscleblind-like protein 2; zinc finger domain, C3H, alternative splicing, cytoplasm, metal-binding, nucleus, RNA-binding, zinc, zinc-finger; NMR {Homo sapiens}

Probab=95.89  E-value=0.0029  Score=39.51  Aligned_cols=25  Identities=16%  Similarity=0.401  Sum_probs=22.5

Q ss_pred             cccccccccccccCCCCCCCCCCCCC
Q psy4297          36 SMTAVCEFYVRGECNKDTMCPLRPGL   61 (69)
Q Consensus        36 s~a~vC~ff~~G~C~kG~~CPfRH~~   61 (69)
                      ....+|..|++|.|+++ .|+|-|..
T Consensus        49 ~~~~vC~dflkG~C~r~-~Cky~H~~   73 (89)
T 2rpp_A           49 GRVIACFDSLKGRCSRE-NCKYLHPP   73 (89)
T ss_dssp             TBEEBCHHHHHTCCCCT-TCCSBCCC
T ss_pred             CceeeehhhhhCcCCCC-CcceecCH
Confidence            45799999999999998 89999974

>2fc6_A Nuclear, target of EGR1, member 1; structure genomics, ZF-CCCH domain, member 1(nuclear), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.66.1.1

Probab=95.68  E-value=0.0043  Score=36.07  Aligned_cols=26  Identities=23%  Similarity=0.613  Sum_probs=22.7

Q ss_pred             ccccccccccc-ccCCCCCCCCCCCCC
Q psy4297          36 SMTAVCEFYVR-GECNKDTMCPLRPGL   61 (69)
Q Consensus        36 s~a~vC~ff~~-G~C~kG~~CPfRH~~   61 (69)
                      ....||.-|.- |-|.+|..||+.|..
T Consensus        18 ~~~~iC~~FSayGwCp~G~~Cp~SHDi   44 (50)
T 2fc6_A           18 HPTSICDNFSAYGWCPLGPQCPQSHDI   44 (50)
T ss_dssp             CCSCBCSHHHHTCCCTTGGGCSSBCCC
T ss_pred             cccchhhhccccccCCCCCCCCccccC
Confidence            46789998865 999999999999975

>2d9m_A Zinc finger CCCH-type domain containing protein 7A; CCCH zinc-finger, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.03  E-value=0.031  Score=33.98  Aligned_cols=25  Identities=28%  Similarity=0.765  Sum_probs=22.3

Q ss_pred             cccccccccccCCCCCCCCCCCCCC
Q psy4297          38 TAVCEFYVRGECNKDTMCPLRPGLA   62 (69)
Q Consensus        38 a~vC~ff~~G~C~kG~~CPfRH~~g   62 (69)
                      -.+|..|.+|.|+.|+.|-|-|-..
T Consensus        20 ~~LC~~~~~G~C~~G~~C~FAHG~~   44 (69)
T 2d9m_A           20 FSICDRYMNGTCPEGNSCKFAHGNA   44 (69)
T ss_dssp             CSBCHHHHHSCCSSCSSCSSBSSHH
T ss_pred             cccCcccCcCCCCCCCccCCcCCHH
Confidence            3899999999999999999999653

>2lhn_A Nuclear polyadenylated RNA-binding protein NAB2; nuclear protein; NMR {Saccharomyces cerevisiae S288C}

Probab=84.91  E-value=0.19  Score=30.97  Aligned_cols=22  Identities=23%  Similarity=0.548  Sum_probs=17.8

Q ss_pred             ccccccccccccCCCCCCCCCCCCC
Q psy4297          37 MTAVCEFYVRGECNKDTMCPLRPGL   61 (69)
Q Consensus        37 ~a~vC~ff~~G~C~kG~~CPfRH~~   61 (69)
                      ....|.||..  |++ ..|||+|.+
T Consensus         8 ~~e~CKf~~~--Ctn-~~C~f~Hp~   29 (80)
T 2lhn_A            8 SLEQCKFGTH--CTN-KRCKYRHAR   29 (80)
Confidence            3478998885  998 999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	69
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	98.07
d1m9oa_	40	Tristetraproline (ttp, tis11, nup475) {Mouse (Mus	96.63
d1rgoa1	36	Butyrate response factor 2 (Tis11D) {Human (Homo s	96.21
d1rgoa2	34	Butyrate response factor 2 (Tis11D) {Human (Homo s	94.37
d2fc6a1	37	Target of EGR1 protein 1, TOE1 {Human (Homo sapien	93.1

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=7e-07  Score=45.99  Aligned_cols=23  Identities=35%  Similarity=0.998  Sum_probs=21.4

Q ss_pred             cccccccccccCCCCCCCCCCCC
Q psy4297          38 TAVCEFYVRGECNKDTMCPLRPG   60 (69)
Q Consensus        38 a~vC~ff~~G~C~kG~~CPfRH~   60 (69)
                      ..+|.|+++|.|+||..|||-|.
T Consensus         6 kelCKfYvqGyCtrgenC~ymH~   28 (29)
T d2cqea2           6 RELCKFYITGFCARAENCPYMHG   28 (29)
T ss_dssp             CSBCTTTTTTCCSCSTTCSSBSS
T ss_pred             hhhhhhheeeeecCCcCcccccC
Confidence            47899999999999999999985

>d1m9oa_ g.66.1.1 (A:) Tristetraproline (ttp, tis11, nup475) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Tristetraproline (ttp, tis11, nup475)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.63  E-value=0.00082  Score=35.52  Aligned_cols=29  Identities=28%  Similarity=0.681  Sum_probs=24.2

Q ss_pred             cccccccccccc-ccCCCCCCCCCCCCCCC
Q psy4297          35 KSMTAVCEFYVR-GECNKDTMCPLRPGLAT   63 (69)
Q Consensus        35 ks~a~vC~ff~~-G~C~kG~~CPfRH~~ge   63 (69)
                      +=....|.+|.+ |.|..|+.|.|.|...|
T Consensus         6 ~yKT~lC~~~~~~g~C~~G~~C~FAHg~~E   35 (40)
T d1m9oa_           6 RYKTELCRTYSESGRCRYGAKCQFAHGLGE   35 (40)
T ss_dssp             CCCSCCCSGGGGTSCCTTTTTCSSCSSSCC
T ss_pred             ccccccChhhhcCCcCCCCCCCCCCCCHHH
Confidence            445689998865 89999999999997665

>d1rgoa1 g.66.1.1 (A:151-186) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.00043  Score=36.00  Aligned_cols=27  Identities=22%  Similarity=0.608  Sum_probs=23.2

Q ss_pred             cccccccccc-ccCCCCCCCCCCCCCCC
Q psy4297          37 MTAVCEFYVR-GECNKDTMCPLRPGLAT   63 (69)
Q Consensus        37 ~a~vC~ff~~-G~C~kG~~CPfRH~~ge   63 (69)
                      ....|.+|.+ |.|..|+.|.|-|-..|
T Consensus         5 KT~lC~~~~~~g~C~~G~~C~FAHg~~E   32 (36)
T d1rgoa1           5 KTELCRPFEESGTCKYGEKCQFAHGFHE   32 (36)
T ss_dssp             TSSBCHHHHHHSCCTTGGGCSSBSSGGG
T ss_pred             chhhCcchhcCCcCCCCCcCCCcCCHHH
Confidence            4678998875 99999999999998765

>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Butyrate response factor 2 (Tis11D)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.37  E-value=0.0061  Score=31.17  Aligned_cols=29  Identities=21%  Similarity=0.394  Sum_probs=24.4

Q ss_pred             cccccccccccc-ccCCCCCCCCCCCCCCC
Q psy4297          35 KSMTAVCEFYVR-GECNKDTMCPLRPGLAT   63 (69)
Q Consensus        35 ks~a~vC~ff~~-G~C~kG~~CPfRH~~ge   63 (69)
                      |-....|..|.+ |.|+.|..|-|-|...|
T Consensus         5 kyKT~lC~~f~~~g~C~yG~~C~FaHg~~E   34 (34)
T d1rgoa2           5 KYKTELCRTFHTIGFCPYGPRCHFIHNADE   34 (34)
T ss_dssp             TTTCSBCHHHHHHSCCTTGGGCSSBCCSCC
T ss_pred             CccchhccccCCCCcCCCCCcccCcCCCCC
Confidence            445689999976 99999999999997654

>d2fc6a1 g.66.1.1 (A:8-44) Target of EGR1 protein 1, TOE1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Target of EGR1 protein 1, TOE1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.10  E-value=0.02  Score=30.19  Aligned_cols=26  Identities=23%  Similarity=0.570  Sum_probs=22.0

Q ss_pred             cccccccccccc-ccCCCCCCCCCCCC
Q psy4297          35 KSMTAVCEFYVR-GECNKDTMCPLRPG   60 (69)
Q Consensus        35 ks~a~vC~ff~~-G~C~kG~~CPfRH~   60 (69)
                      .....||.-|.- |-|..|..||..|.
T Consensus        10 ~~~~~iC~~FsAyGWCP~G~qCp~SHd   36 (37)
T d2fc6a1          10 PHPTSICDNFSAYGWCPLGPQCPQSHD   36 (37)
T ss_dssp             CCCSCBCSHHHHTCCCTTGGGCSSBCC
T ss_pred             CCccchhhhhhhccccCCCCCCcccCc
Confidence            345689998865 99999999999996