Psyllid ID: psy4403

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-
Protein Sequence
MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYDNSAPNSKYCVQSMLGSQQESPLGKKFLESQTLEQIW
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHccccEEEEEccHHccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHccccccHHHHHHHHcccHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHccccccccHHHHHcccHHHHc
Coil and Loop (DISEMBL)
mdpsggskeivDYGGILKFKADTNASSVMIARAAqdncsifsptkgIQDIHQMIKEYLRYCVdydnsapnsKYCVQSMlgsqqesplgkkflESQTLEQIW
Flexible Loop (DISEMBL)
MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYDNSAPNSKYCVQSMLgsqqesplgkkflesqtleqiw
Low Complexity Region (SEG)
MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYDNSAPNSKYCVQSMLGSQQESPLGKKFLESQTLEQIW
Disordered region (IsUnstruct)
*********IVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYDNSAPNSKYCV**************************
Disordered Region (DISOPRED)
MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYDNSAPNSKYCVQSMLGSQQESPLGKKFLESQTLEQIW
Disordered Region (DISEMBL)
MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYDNSAPNSKYCVQSMLGSQQESPLGKKFLESQTLEQIW
Disordered Region (DISPRO)
*****GSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYDNSAPNSKYCVQSMLGSQQESPLGKKFLESQTLE*IW
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYDNSAPNSKYCVQSMLGSQQESPLGKKFLESQTLEQIW
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	101	2.2.26 [Sep-21-2011]
Q9NX74	493	tRNA-dihydrouridine(20) s	yes	N/A	0.950	0.194	0.428	1e-13
Q9D7B1	493	tRNA-dihydrouridine(20) s	yes	N/A	0.950	0.194	0.418	5e-13

>sp|Q9NX74|DUS2L_HUMAN tRNA-dihydrouridine(20) synthase [NAD(P)+]-like OS=Homo sapiens GN=DUS2L PE=1 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/98 (42%), Positives = 62/98 (63%), Gaps = 2/98 (2%)

Query: 4   SGGSKE-IVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCV 62
           +GGS + I  Y  I  F+  T ASSVM+ARAA  N SIF   +G++ + +++++Y+RY V
Sbjct: 214 NGGSHDHIQQYSDIEDFRQATAASSVMVARAAMWNPSIFL-KEGLRPLEEVMQKYIRYAV 272

Query: 63  DYDNSAPNSKYCVQSMLGSQQESPLGKKFLESQTLEQI 100
            YDN   N+KYC+  ML  Q ESP G+    +Q+  +I
Sbjct: 273 QYDNHYTNTKYCLCQMLREQLESPQGRLLHAAQSSREI 310

Dihydrouridine synthase. Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.
Homo sapiens (taxid: 9606)
EC: 1EC: .EC: 3EC: .EC: 1EC: .EC: -

>sp|Q9D7B1|DUS2L_MOUSE tRNA-dihydrouridine(20) synthase [NAD(P)+]-like OS=Mus musculus GN=Dus2l PE=1 SV=1

 Score = 72.8 bits (177), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 41/98 (41%), Positives = 62/98 (63%), Gaps = 2/98 (2%)

Query: 4   SGGSKE-IVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCV 62
           +GGS + I  +  I  F+  T ASSVM+ARAA  N SIF    G++ + +++++Y+RY V
Sbjct: 214 NGGSHDHIQQHVDIEDFRQATAASSVMVARAAMWNPSIFL-KDGLRPLEEVMQKYIRYAV 272

Query: 63  DYDNSAPNSKYCVQSMLGSQQESPLGKKFLESQTLEQI 100
            YDN   N+KYC+  ML  Q ESP G+    +Q+ ++I
Sbjct: 273 QYDNHYTNTKYCLCQMLREQLESPQGRLLHAAQSSQEI 310

Dihydrouridine synthase. Catalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
242005452	409	tRNA-dihydrouridine synthase, putative [	0.950	0.234	0.618	1e-26
91082415	455	PREDICTED: similar to tRNA-dihydrouridin	0.950	0.210	0.597	2e-25
328787042	460	PREDICTED: tRNA-dihydrouridine synthase	0.950	0.208	0.628	1e-24
380016047	460	PREDICTED: tRNA-dihydrouridine(20) synth	0.950	0.208	0.628	1e-24
350412745	467	PREDICTED: tRNA-dihydrouridine synthase	0.950	0.205	0.628	1e-24
345479115	465	PREDICTED: tRNA-dihydrouridine synthase	0.950	0.206	0.587	3e-24
340720499	450	PREDICTED: tRNA-dihydrouridine synthase	0.950	0.213	0.618	3e-24
307169925	467	tRNA-dihydrouridine synthase 2-like [Cam	0.950	0.205	0.587	6e-24
383849955	467	PREDICTED: tRNA-dihydrouridine(20) synth	0.950	0.205	0.597	2e-23
357623751	438	putative tRNA-dihydrouridine synthase [D	0.950	0.219	0.587	3e-23

>gi|242005452|ref|XP_002423579.1| tRNA-dihydrouridine synthase, putative [Pediculus humanus corporis] gi|212506727|gb|EEB10841.1| tRNA-dihydrouridine synthase, putative [Pediculus humanus corporis]

 Score =  123 bits (309), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 60/97 (61%), Positives = 76/97 (78%), Gaps = 1/97 (1%)

Query: 4   SGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVD 63
           +GGSKEI +Y  ILKFK  T  SS+M+ARAA+ NCS+FS  KG  DI  +IK+YL+Y +D
Sbjct: 169 NGGSKEIDNYNDILKFKEATGCSSIMLARAAEWNCSVFS-NKGKVDIDTIIKQYLKYAID 227

Query: 64  YDNSAPNSKYCVQSMLGSQQESPLGKKFLESQTLEQI 100
           YDNS  NSKYC+Q++L   QE+P GKKFLE+QT+EQI
Sbjct: 228 YDNSPANSKYCIQNILKELQETPRGKKFLEAQTMEQI 264

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91082415|ref|XP_970120.1| PREDICTED: similar to tRNA-dihydrouridine synthase [Tribolium castaneum] gi|270007514|gb|EFA03962.1| hypothetical protein TcasGA2_TC014107 [Tribolium castaneum]

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/97 (59%), Positives = 74/97 (76%), Gaps = 1/97 (1%)

Query: 4   SGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVD 63
           +GGSKEI  Y  I+KFK +   SSVMIARAA+ NCSIF   +G+ DI  +I++YL+Y +D
Sbjct: 215 NGGSKEIEKYQDIIKFKEECGCSSVMIARAAEANCSIFR-KQGLLDIETVIEQYLKYAID 273

Query: 64  YDNSAPNSKYCVQSMLGSQQESPLGKKFLESQTLEQI 100
           YDNS  N+KYC+Q++L   QE+P GKKFLE QTLEQI
Sbjct: 274 YDNSPSNTKYCIQNILKELQETPRGKKFLECQTLEQI 310

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328787042|ref|XP_393745.3| PREDICTED: tRNA-dihydrouridine synthase 2-like [Apis mellifera]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/97 (62%), Positives = 72/97 (74%), Gaps = 1/97 (1%)

Query: 4   SGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVD 63
           +GGSKEI  Y  I KFK  T  SSVM+ARAA+ NCSIFS  KG+  +  +IK YL+Y VD
Sbjct: 216 NGGSKEIQKYSDIFKFKEITGCSSVMLARAAEWNCSIFSE-KGLLPMEDVIKSYLKYAVD 274

Query: 64  YDNSAPNSKYCVQSMLGSQQESPLGKKFLESQTLEQI 100
            DNS  N+KYC+Q++L  QQES LGKKFL SQTLEQI
Sbjct: 275 CDNSPSNTKYCIQNILREQQESTLGKKFLSSQTLEQI 311

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380016047|ref|XP_003692004.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like [Apis florea]

 Score =  117 bits (292), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/97 (62%), Positives = 72/97 (74%), Gaps = 1/97 (1%)

Query: 4   SGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVD 63
           +GGSKEI  Y  I KFK  T  SSVM+ARAA+ NCSIFS  KG+  +  +IK YL+Y VD
Sbjct: 216 NGGSKEIQKYSDIFKFKEITGCSSVMLARAAEWNCSIFSE-KGLLPMEDVIKSYLKYAVD 274

Query: 64  YDNSAPNSKYCVQSMLGSQQESPLGKKFLESQTLEQI 100
            DNS  N+KYC+Q++L  QQES LGKKFL SQTLEQI
Sbjct: 275 CDNSPSNTKYCIQNILREQQESTLGKKFLSSQTLEQI 311

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|350412745|ref|XP_003489746.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Bombus impatiens]

 Score =  116 bits (291), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/97 (62%), Positives = 72/97 (74%), Gaps = 1/97 (1%)

Query: 4   SGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVD 63
           +GGSKEI  Y  I KFK  T  SSVM+ARAAQ NCSIFS  +G+  +  +IK YL+Y VD
Sbjct: 221 NGGSKEIQKYSDIFKFKEITGCSSVMLARAAQWNCSIFSK-EGLLPMEDVIKSYLKYAVD 279

Query: 64  YDNSAPNSKYCVQSMLGSQQESPLGKKFLESQTLEQI 100
            DNS  N+KYC+Q++L  QQES LGKKFL SQTLEQI
Sbjct: 280 CDNSPSNTKYCIQNILREQQESTLGKKFLSSQTLEQI 316

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345479115|ref|XP_001602214.2| PREDICTED: tRNA-dihydrouridine synthase 2-like [Nasonia vitripennis]

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 57/97 (58%), Positives = 71/97 (73%), Gaps = 1/97 (1%)

Query: 4   SGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVD 63
           +GGSKEI     I KFK +T  SSVMIARAA+ NCSIF    G+  +  +I+ YL+  VD
Sbjct: 220 NGGSKEIEKRADIFKFKKETGCSSVMIARAAEWNCSIFREA-GMLPMEDVIRSYLKLAVD 278

Query: 64  YDNSAPNSKYCVQSMLGSQQESPLGKKFLESQTLEQI 100
           YDNS  N+KYCVQ++L   QESPLGK+FL++QTLEQI
Sbjct: 279 YDNSPSNTKYCVQNILRELQESPLGKRFLDTQTLEQI 315

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720499|ref|XP_003398674.1| PREDICTED: tRNA-dihydrouridine synthase 2-like [Bombus terrestris]

 Score =  115 bits (288), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 60/97 (61%), Positives = 72/97 (74%), Gaps = 1/97 (1%)

Query: 4   SGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVD 63
           +GGSKEI  Y  I KFK  T  SSVM+ARAA+ NCSIFS  +G+  +  +IK YL+Y VD
Sbjct: 221 NGGSKEIQKYSDIFKFKEITGCSSVMLARAAEWNCSIFSK-EGLLPMEDVIKSYLKYAVD 279

Query: 64  YDNSAPNSKYCVQSMLGSQQESPLGKKFLESQTLEQI 100
            DNS  N+KYC+Q++L  QQES LGKKFL SQTLEQI
Sbjct: 280 CDNSPSNTKYCIQNILREQQESTLGKKFLSSQTLEQI 316

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307169925|gb|EFN62434.1| tRNA-dihydrouridine synthase 2-like [Camponotus floridanus]

 Score =  114 bits (286), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 57/97 (58%), Positives = 72/97 (74%), Gaps = 1/97 (1%)

Query: 4   SGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVD 63
           +GGSK+I  +  I +FK  T  SSVM+ARAAQ NCSIF   +G+  +  +IK YL+Y VD
Sbjct: 220 NGGSKDIQQHSDIFRFKEKTGCSSVMLARAAQWNCSIFR-KEGLLSMENVIKSYLKYAVD 278

Query: 64  YDNSAPNSKYCVQSMLGSQQESPLGKKFLESQTLEQI 100
            DNS  N+KYCVQ++L   QESPLG+KFL+SQTLEQI
Sbjct: 279 CDNSPSNTKYCVQNILRELQESPLGRKFLDSQTLEQI 315

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849955|ref|XP_003700598.1| PREDICTED: tRNA-dihydrouridine(20) synthase [NAD(P)+]-like [Megachile rotundata]

 Score =  113 bits (282), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 58/97 (59%), Positives = 70/97 (72%), Gaps = 1/97 (1%)

Query: 4   SGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVD 63
           +GGSKEI  +  I KFK  T  SSVM+ARAA+ NCSIFS   G+  +  +IK YL+Y VD
Sbjct: 221 NGGSKEIQKHSDIFKFKEVTGCSSVMLARAAEWNCSIFS-KNGLLPMEDVIKSYLKYAVD 279

Query: 64  YDNSAPNSKYCVQSMLGSQQESPLGKKFLESQTLEQI 100
            DN   N+KYC+Q++L  QQES LGKKFL SQTLEQI
Sbjct: 280 CDNPPSNTKYCIQNILREQQESELGKKFLNSQTLEQI 316

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|357623751|gb|EHJ74777.1| putative tRNA-dihydrouridine synthase [Danaus plexippus]

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 57/97 (58%), Positives = 72/97 (74%), Gaps = 1/97 (1%)

Query: 4   SGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVD 63
           +GGSKEI  Y  ILKFK  T   SVMIARAA+ NCSIF   +G+ D+ Q+I+EYL+  V 
Sbjct: 197 NGGSKEIEKYADILKFKEMTGCKSVMIARAAEWNCSIFR-KEGMLDMDQVIREYLKLAVL 255

Query: 64  YDNSAPNSKYCVQSMLGSQQESPLGKKFLESQTLEQI 100
           +DNS  N+KYCVQ++L   QE+P G+KFL+ QTLEQI
Sbjct: 256 FDNSPSNTKYCVQNILRELQETPRGRKFLDCQTLEQI 292

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	101
FB|FBgn0030554	473	CG1434 [Drosophila melanogaste	0.950	0.202	0.536	3.5e-22
ZFIN|ZDB-GENE-100922-233	504	dus2l "dihydrouridine synthase	0.950	0.190	0.438	7e-15
UNIPROTKB|E7EUN9	458	DUS2L "tRNA-dihydrouridine(20)	0.950	0.209	0.428	6.9e-14
UNIPROTKB|Q9NX74	493	DUS2L "tRNA-dihydrouridine(20)	0.950	0.194	0.428	8.1e-14
UNIPROTKB|E1C4F6	493	DUS2L "Uncharacterized protein	0.950	0.194	0.428	1.7e-13
UNIPROTKB|E2RKU2	493	DUS2L "Uncharacterized protein	0.950	0.194	0.418	4.6e-13
UNIPROTKB|Q0VC60	493	DUS2L "Uncharacterized protein	0.950	0.194	0.428	6e-13
MGI|MGI:1913619	493	Dus2l "dihydrouridine synthase	0.950	0.194	0.418	6e-13
RGD|1305612	493	Dus2l "dihydrouridine synthase	0.950	0.194	0.418	6e-13
UNIPROTKB|I3LES5	493	DUS2L "Uncharacterized protein	0.950	0.194	0.418	7.6e-13

FB|FBgn0030554 CG1434 [Drosophila melanogaster (taxid:7227)]

 Score = 263 (97.6 bits), Expect = 3.5e-22, P = 3.5e-22
 Identities = 52/97 (53%), Positives = 72/97 (74%)

Query:     4 SGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVD 63
             +GGSK +  Y  + KF+ +  A SVM+ARAAQ N SIF P +G+  + ++I++YLR CVD
Sbjct:   227 NGGSKNMHCYDDLRKFQMECGADSVMVARAAQINVSIFRP-EGLLPMDELIEKYLRLCVD 285

Query:    64 YDNSAPNSKYCVQSMLGSQQESPLGKKFLESQTLEQI 100
             YDN+  N+KYCVQS+L   QE+P GK+FL+ QTL+QI
Sbjct:   286 YDNAPHNAKYCVQSILRELQETPRGKRFLQCQTLQQI 322

GO:0017150 "tRNA dihydrouridine synthase activity" evidence=ISS

GO:0003725 "double-stranded RNA binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

ZFIN|ZDB-GENE-100922-233 dus2l "dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 197 (74.4 bits), Expect = 7.0e-15, P = 7.0e-15
 Identities = 43/98 (43%), Positives = 64/98 (65%)

Query:     4 SGGSKEIV-DYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCV 62
             +GGS +IV ++  I  F+  T ASSVM+ARAA  N S+F   +G   + Q+++EY+ Y V
Sbjct:   219 NGGSSDIVKEFEDIETFRESTGASSVMLARAAMWNPSVFRQ-QGALSVDQVMQEYITYAV 277

Query:    63 DYDNSAPNSKYCVQSMLGSQQESPLGKKFLESQTLEQI 100
              YDN+  N+KYC+  ML  + ESP GK+   +QT ++I
Sbjct:   278 RYDNNPFNTKYCLCQMLRDRVESPFGKRLHAAQTNQEI 315

GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|E7EUN9 DUS2L "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like" [Homo sapiens (taxid:9606)]

 Score = 187 (70.9 bits), Expect = 6.9e-14, P = 6.9e-14
 Identities = 42/98 (42%), Positives = 62/98 (63%)

Query:     4 SGGSKE-IVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCV 62
             +GGS + I  Y  I  F+  T ASSVM+ARAA  N SIF   +G++ + +++++Y+RY V
Sbjct:   179 NGGSHDHIQQYSDIEDFRQATAASSVMVARAAMWNPSIFLK-EGLRPLEEVMQKYIRYAV 237

Query:    63 DYDNSAPNSKYCVQSMLGSQQESPLGKKFLESQTLEQI 100
              YDN   N+KYC+  ML  Q ESP G+    +Q+  +I
Sbjct:   238 QYDNHYTNTKYCLCQMLREQLESPQGRLLHAAQSSREI 275

GO:0003725 "double-stranded RNA binding" evidence=IEA

GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q9NX74 DUS2L "tRNA-dihydrouridine(20) synthase [NAD(P)+]-like" [Homo sapiens (taxid:9606)]

 Score = 187 (70.9 bits), Expect = 8.1e-14, P = 8.1e-14
 Identities = 42/98 (42%), Positives = 62/98 (63%)

Query:     4 SGGSKE-IVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCV 62
             +GGS + I  Y  I  F+  T ASSVM+ARAA  N SIF   +G++ + +++++Y+RY V
Sbjct:   214 NGGSHDHIQQYSDIEDFRQATAASSVMVARAAMWNPSIFLK-EGLRPLEEVMQKYIRYAV 272

Query:    63 DYDNSAPNSKYCVQSMLGSQQESPLGKKFLESQTLEQI 100
              YDN   N+KYC+  ML  Q ESP G+    +Q+  +I
Sbjct:   273 QYDNHYTNTKYCLCQMLREQLESPQGRLLHAAQSSREI 310

GO:0003725 "double-stranded RNA binding" evidence=IEA

GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|E1C4F6 DUS2L "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 184 (69.8 bits), Expect = 1.7e-13, P = 1.7e-13
 Identities = 42/98 (42%), Positives = 63/98 (64%)

Query:     4 SGGSKEIV-DYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCV 62
             +GGS + + +YG I  F+  T ASSVMIARAA  N SIF   +G   + +++++Y++Y V
Sbjct:   216 NGGSHDFIKEYGDIETFQKATAASSVMIARAAMWNPSIFRK-EGPFPLRKVMQDYIKYAV 274

Query:    63 DYDNSAPNSKYCVQSMLGSQQESPLGKKFLESQTLEQI 100
              YDN   N+KYC+  ML  Q E+  GKK   +Q+ ++I
Sbjct:   275 RYDNHYTNTKYCLCQMLREQLETAQGKKLHVAQSTQEI 312

GO:0003725 "double-stranded RNA binding" evidence=IEA

GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E2RKU2 DUS2L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 180 (68.4 bits), Expect = 4.6e-13, P = 4.6e-13
 Identities = 41/98 (41%), Positives = 63/98 (64%)

Query:     4 SGGSKE-IVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCV 62
             +GGS + I  Y  I  F+  T ASSVM+ARAA  N SIF   +G++ + +++++Y+RY V
Sbjct:   214 NGGSHDHIQKYLDIEDFRQATAASSVMVARAAMWNPSIFLK-EGLRPLEEVMQKYIRYAV 272

Query:    63 DYDNSAPNSKYCVQSMLGSQQESPLGKKFLESQTLEQI 100
              Y+N   N+KYC+  ML  Q ESP G+    +Q+ ++I
Sbjct:   273 QYENHYTNTKYCLCQMLREQLESPQGRLLHAAQSSQEI 310

GO:0005739 "mitochondrion" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA

UNIPROTKB|Q0VC60 DUS2L "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 179 (68.1 bits), Expect = 6.0e-13, P = 6.0e-13
 Identities = 42/98 (42%), Positives = 62/98 (63%)

Query:     4 SGGSKE-IVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCV 62
             +GGS + I  Y  I  F+  T ASSVM+ARAA  N SIF   +G + + +++++Y+RY V
Sbjct:   214 NGGSHDHIQGYLDIEDFRRATAASSVMVARAAMWNPSIFLK-EGPRPLEEVMQKYIRYAV 272

Query:    63 DYDNSAPNSKYCVQSMLGSQQESPLGKKFLESQTLEQI 100
              YDN   N+KYC+  ML  Q ESP G+    +Q+ ++I
Sbjct:   273 QYDNHYTNTKYCLCQMLREQLESPQGRLLHAAQSSQEI 310

GO:0005739 "mitochondrion" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA

MGI|MGI:1913619 Dus2l "dihydrouridine synthase 2-like (SMM1, S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 179 (68.1 bits), Expect = 6.0e-13, P = 6.0e-13
 Identities = 41/98 (41%), Positives = 62/98 (63%)

Query:     4 SGGSKE-IVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCV 62
             +GGS + I  +  I  F+  T ASSVM+ARAA  N SIF    G++ + +++++Y+RY V
Sbjct:   214 NGGSHDHIQQHVDIEDFRQATAASSVMVARAAMWNPSIFLKD-GLRPLEEVMQKYIRYAV 272

Query:    63 DYDNSAPNSKYCVQSMLGSQQESPLGKKFLESQTLEQI 100
              YDN   N+KYC+  ML  Q ESP G+    +Q+ ++I
Sbjct:   273 QYDNHYTNTKYCLCQMLREQLESPQGRLLHAAQSSQEI 310

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0008033 "tRNA processing" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

RGD|1305612 Dus2l "dihydrouridine synthase 2-like, SMM1 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 179 (68.1 bits), Expect = 6.0e-13, P = 6.0e-13
 Identities = 41/98 (41%), Positives = 62/98 (63%)

Query:     4 SGGSKE-IVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCV 62
             +GGS + I  +  I  F+  T ASSVM+ARAA  N SIF    G++ + +++++Y+RY V
Sbjct:   214 NGGSHDHIQQHLDIEDFRQATAASSVMVARAAMWNPSIFLKD-GLRPLEEVMQKYIRYAV 272

Query:    63 DYDNSAPNSKYCVQSMLGSQQESPLGKKFLESQTLEQI 100
              YDN   N+KYC+  ML  Q ESP G+    +Q+ ++I
Sbjct:   273 QYDNHYTNTKYCLCQMLREQLESPQGRMLHAAQSSQEI 310

GO:0003725 "double-stranded RNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

UNIPROTKB|I3LES5 DUS2L "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 178 (67.7 bits), Expect = 7.6e-13, P = 7.6e-13
 Identities = 41/98 (41%), Positives = 62/98 (63%)

Query:     4 SGGSKE-IVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCV 62
             +GGS + I  Y  I  F+  T ASSVM+ARAA  N S+F   +G + + +++++Y+RY V
Sbjct:   214 NGGSHDHIQKYLDIEDFRQATAASSVMVARAAMWNPSVFLK-EGPRPLEEVMQKYIRYAV 272

Query:    63 DYDNSAPNSKYCVQSMLGSQQESPLGKKFLESQTLEQI 100
              YDN   N+KYC+  ML  Q ESP G+    +Q+ ++I
Sbjct:   273 QYDNHHTNTKYCLCQMLREQLESPQGRLLHAAQSSQEI 310

GO:0005739 "mitochondrion" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA

GO:0017150 "tRNA dihydrouridine synthase activity" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	101
cd02801	231	cd02801, DUS_like_FMN, Dihydrouridine synthase-lik	3e-04

>gnl|CDD|239200 cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain

 Score = 37.5 bits (88), Expect = 3e-04
 Identities = 11/41 (26%), Positives = 16/41 (39%)

Query: 9   EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQD 49
           +I      L+    T    VMI R A  N  +F   K + +
Sbjct: 191 DIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFREIKELLE 231

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. Length = 231

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	101
PRK10550	312	tRNA-dihydrouridine synthase C; Provisional	99.87
PRK10415	321	tRNA-dihydrouridine synthase B; Provisional	99.86
COG0042	323	tRNA-dihydrouridine synthase [Translation, ribosom	99.85
KOG2335|consensus	358		99.8
PF01207	309	Dus: Dihydrouridine synthase (Dus); InterPro: IPR0	99.8
TIGR00742	318	yjbN tRNA dihydrouridine synthase A. Members of th	99.78
TIGR00737	319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	99.76
KOG2334|consensus	477		99.69
PRK11815	333	tRNA-dihydrouridine synthase A; Provisional	99.68
KOG2333|consensus	614		99.5
cd02911	233	arch_FMN Archeal FMN-binding domain. This family o	99.17
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	98.99
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	98.87
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	98.79
cd04734	343	OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN	98.71
cd04741	294	DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c	98.58
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	98.48
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	98.38
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	98.34
cd02931	382	ER_like_FMN Enoate reductase (ER)-like FMN-binding	98.34
cd02929	370	TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH)	98.32
PRK13523	337	NADPH dehydrogenase NamA; Provisional	98.31
cd02930	353	DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin	98.3
cd04733	338	OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN	98.26
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	98.26
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	98.19
cd02803	327	OYE_like_FMN_family Old yellow enzyme (OYE)-like F	98.17
cd04738	327	DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl	98.16
cd04735	353	OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN	98.15
PRK05286	344	dihydroorotate dehydrogenase 2; Reviewed	98.14
cd02933	338	OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind	98.07
PRK14024	241	phosphoribosyl isomerase A; Provisional	98.07
PRK08318	420	dihydropyrimidine dehydrogenase subunit B; Validat	98.05
cd02932	336	OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN	97.96
cd04747	361	OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN	97.95
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.89
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	97.81
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	97.8
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	97.79
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	97.74
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	97.73
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	97.65
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	97.58
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	97.5
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.48
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	97.27
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	97.24
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	97.24
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	97.17
TIGR02708	367	L_lactate_ox L-lactate oxidase. Members of this pr	97.05
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	96.76
PRK04180	293	pyridoxal biosynthesis lyase PdxS; Provisional	96.74
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	96.68
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	96.44
TIGR00343	287	pyridoxal 5'-phosphate synthase, synthase subunit	96.34
PF00724	341	Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox	96.29
cd04727	283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	96.26
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	96.26
PRK10605	362	N-ethylmaleimide reductase; Provisional	96.25
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	96.25
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	96.12
TIGR02151	333	IPP_isom_2 isopentenyl-diphosphate delta-isomerase	96.07
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	95.94
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	95.94
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	95.84
PRK02506	310	dihydroorotate dehydrogenase 1A; Reviewed	95.83
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	95.78
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	95.48
PRK04128	228	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	95.47
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	95.43
TIGR03151	307	enACPred_II putative enoyl-(acyl-carrier-protein)	95.38
TIGR01036	335	pyrD_sub2 dihydroorotate dehydrogenase, subfamily	95.02
PLN02411	391	12-oxophytodienoate reductase	94.54
PRK05437	352	isopentenyl pyrophosphate isomerase; Provisional	94.38
TIGR01306	321	GMP_reduct_2 guanosine monophosphate reductase, ba	94.3
COG0167	310	PyrD Dihydroorotate dehydrogenase [Nucleotide tran	94.22
cd04728	248	ThiG Thiazole synthase (ThiG) is the tetrameric en	94.09
COG1902	363	NemA NADH:flavin oxidoreductases, Old Yellow Enzym	94.09
PRK00208	250	thiG thiazole synthase; Reviewed	94.05
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	94.01
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	93.96
cd02811	326	IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di	93.92
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	93.56
PRK07695	201	transcriptional regulator TenI; Provisional	93.21
PF01180	295	DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP	93.16
COG0106	241	HisA Phosphoribosylformimino-5-aminoimidazole carb	93.0
PLN02495	385	oxidoreductase, acting on the CH-CH group of donor	92.88
TIGR01919	243	hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy	92.85
COG0106	241	HisA Phosphoribosylformimino-5-aminoimidazole carb	92.71
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	92.71
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	92.62
PRK04128	228	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	92.58
PRK14024	241	phosphoribosyl isomerase A; Provisional	92.52
cd02812	219	PcrB_like PcrB_like proteins. One member of this f	92.44
COG0107	256	HisF Imidazoleglycerol-phosphate synthase [Amino a	92.41
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	92.4
PF00218	254	IGPS: Indole-3-glycerol phosphate synthase; InterP	92.24
TIGR00734	221	hisAF_rel hisA/hisF family protein. This alignment	92.05
KOG1606|consensus	296		91.93
PRK13586	232	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	91.65
PRK14114	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	91.52
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	91.52
TIGR01768	223	GGGP-family geranylgeranylglyceryl phosphate synth	91.52
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	91.48
PLN02460	338	indole-3-glycerol-phosphate synthase	91.4
COG0134	254	TrpC Indole-3-glycerol phosphate synthase [Amino a	91.23
PLN02535	364	glycolate oxidase	91.16
PRK13586	232	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	91.09
cd04723	233	HisA_HisF Phosphoribosylformimino-5-aminoimidazole	90.98
PLN02826	409	dihydroorotate dehydrogenase	90.69
PRK13957	247	indole-3-glycerol-phosphate synthase; Provisional	89.99
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	89.63
TIGR01919	243	hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy	89.42
PF00977	229	His_biosynth: Histidine biosynthesis protein; Inte	89.27
PRK06739	352	pyruvate kinase; Validated	89.25
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	89.11
PRK04302	223	triosephosphate isomerase; Provisional	88.68
cd02808	392	GltS_FMN Glutamate synthase (GltS) FMN-binding dom	88.65
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	88.49
PRK04169	232	geranylgeranylglyceryl phosphate synthase-like pro	87.6
cd04736	361	MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin	87.53
cd02922	344	FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom	87.47
PF00977	229	His_biosynth: Histidine biosynthesis protein; Inte	87.26
PRK14114	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	87.17
PRK13802	695	bifunctional indole-3-glycerol phosphate synthase/	87.0
PRK09427	454	bifunctional indole-3-glycerol phosphate synthase/	86.42
PRK14725	608	pyruvate kinase; Provisional	86.19
PRK14567	253	triosephosphate isomerase; Provisional	85.87
PF00478	352	IMPDH: IMP dehydrogenase / GMP reductase domain; I	85.85
PRK11197	381	lldD L-lactate dehydrogenase; Provisional	85.56
cd03332	383	LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin	85.44
PLN02461	511	Probable pyruvate kinase	85.36
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	85.33
TIGR00734	221	hisAF_rel hisA/hisF family protein. This alignment	84.98
PTZ00066	513	pyruvate kinase; Provisional	84.91
PLN02762	509	pyruvate kinase complex alpha subunit	84.86
PLN02446	262	(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy	84.75
PLN02979	366	glycolate oxidase	84.37
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	84.07
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	83.85
PLN02765	526	pyruvate kinase	83.77
PLN02446	262	(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy	83.68
COG1304	360	idi Isopentenyl diphosphate isomerase (BS_ypgA, MT	83.37
COG0214	296	SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta	82.81
KOG2334|consensus	477		82.61
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	82.59
PLN02274	505	inosine-5'-monophosphate dehydrogenase	82.08
PLN02493	367	probable peroxisomal (S)-2-hydroxy-acid oxidase	81.79
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	81.78
TIGR02129	253	hisA_euk phosphoribosylformimino-5-aminoimidazole	80.25

>PRK10550 tRNA-dihydrouridine synthase C; Provisional

Probab=99.87  E-value=3.6e-22  Score=147.35  Aligned_cols=97  Identities=20%  Similarity=0.160  Sum_probs=79.7

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCC---CCCHHH---HHHHHHHHHHHhcCCC---CcH
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKG---IQDIHQ---MIKEYLRYCVDYDNSA---PNS   71 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~---~~~~~~---~~~~~l~~~~~~~~~~---~~~   71 (101)
                      +++||   ||+|++|++++++.||||+||||||+++|||||+++..   ..++.+   ++.+|+++..++....   ..+
T Consensus       197 Vi~nG---dI~t~~da~~~l~~~g~DgVmiGRg~l~nP~lf~~~~~g~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~  273 (312)
T PRK10550        197 VIANG---EIWDWQSAQQCMAITGCDAVMIGRGALNIPNLSRVVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLYHVARI  273 (312)
T ss_pred             EEEeC---CcCCHHHHHHHHhccCCCEEEEcHHhHhCcHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHhcCcchhHHHHH
Confidence            46788   99999999999999999999999999999999998632   234544   4677777655554322   226


Q ss_pred             HHHHHhhhCCCCC-hHHHHHHHhcCChhhh
Q psy4403          72 KYCVQSMLGSQQE-SPLGKKFLESQTLEQI  100 (101)
Q Consensus        72 k~~l~~~~~~~~~-~~~~~~i~~~~~~~e~  100 (101)
                      |.++.+|++++++ +++|+++.+++|++|+
T Consensus       274 rk~~~~y~~~~~~~~~~r~~i~~~~~~~e~  303 (312)
T PRK10550        274 KQWLGYLRKEYDEATELFQEIRALNNSPDI  303 (312)
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHcCCCHHHH
Confidence            8999999999999 9999999999999986

>PRK10415 tRNA-dihydrouridine synthase B; Provisional

Probab=99.86  E-value=5.6e-22  Score=146.69  Aligned_cols=97  Identities=21%  Similarity=0.203  Sum_probs=82.5

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCC-----C----CCCHH---HHHHHHHHHHHHhcCCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTK-----G----IQDIH---QMIKEYLRYCVDYDNSA   68 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~-----~----~~~~~---~~~~~~l~~~~~~~~~~   68 (101)
                      +++||   ||.|++|++++++.|||||||||||+++|||||+++.     +    +.++.   +++.+|++.+.+|.++.
T Consensus       197 VI~nG---gI~s~~da~~~l~~~gadgVmiGR~~l~nP~if~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (321)
T PRK10415        197 VIANG---DITDPLKARAVLDYTGADALMIGRAAQGRPWIFREIQHYLDTGELLPPLPLAEVKRLLCAHVRELHDFYGPA  273 (321)
T ss_pred             EEEeC---CCCCHHHHHHHHhccCCCEEEEChHhhcCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHChH
Confidence            46788   9999999999999999999999999999999998861     2    23343   56788888888876543


Q ss_pred             ---CcHHHHHHhhhCCCCC-hHHHHHHHhcCChhhh
Q psy4403          69 ---PNSKYCVQSMLGSQQE-SPLGKKFLESQTLEQI  100 (101)
Q Consensus        69 ---~~~k~~l~~~~~~~~~-~~~~~~i~~~~~~~e~  100 (101)
                         ...|+++.+|++++++ +++|+.+.+++|++|+
T Consensus       274 ~~~~~~rk~~~~y~~~~~~~~~~r~~~~~~~~~~~~  309 (321)
T PRK10415        274 KGYRIARKHVSWYLQEHAPNDQFRRTFNAIEDASEQ  309 (321)
T ss_pred             HHHHHHHHHHHHHHhcCCchHHHHHHHHcCCCHHHH
Confidence               3478999999999999 9999999999999986

>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=99.85  E-value=2.7e-21  Score=143.27  Aligned_cols=97  Identities=18%  Similarity=0.236  Sum_probs=82.0

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC----CCC---CCHH---HHHHHHHHHHHHhcC--CC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT----KGI---QDIH---QMIKEYLRYCVDYDN--SA   68 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~----~~~---~~~~---~~~~~~l~~~~~~~~--~~   68 (101)
                      +++||   ||+|++|++++++.||||||||||||++|||||.++    .+.   .++.   +++.+|++...++.+  ..
T Consensus       201 vi~NG---dI~s~~~a~~~l~~tg~DgVMigRga~~nP~l~~~i~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~  277 (323)
T COG0042         201 VIANG---DIKSLEDAKEMLEYTGADGVMIGRGALGNPWLFRQIDYLETGELLPPTLAEVLDILREHLELLLEYYGKKGL  277 (323)
T ss_pred             EEeCC---CcCCHHHHHHHHHhhCCCEEEEcHHHccCCcHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHhccccHH
Confidence            47888   999999999999999999999999999999999963    222   3443   678889988888774  23


Q ss_pred             CcHHHHHHhhhCCCCC-hHHHHHHHhcCChhhh
Q psy4403          69 PNSKYCVQSMLGSQQE-SPLGKKFLESQTLEQI  100 (101)
Q Consensus        69 ~~~k~~l~~~~~~~~~-~~~~~~i~~~~~~~e~  100 (101)
                      ...+.|+.+|+++.++ +++|+.+.++.+.+++
T Consensus       278 ~~~r~h~~~~~~~~~~a~~~r~~~~~~~~~~~~  310 (323)
T COG0042         278 RRLRKHLGYYLKGLPGARELRRALNKAEDGAEV  310 (323)
T ss_pred             HHHHHHHHHHhhcCccHHHHHHHHhccCcHHHH
Confidence            4478899999999999 9999999999998875

>KOG2335|consensus

Probab=99.80  E-value=7.5e-20  Score=135.78  Aligned_cols=95  Identities=18%  Similarity=0.166  Sum_probs=78.0

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHHhcCC--CCcHHHHHHhh
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYDNS--APNSKYCVQSM   78 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~k~~l~~~   78 (101)
                      ++|||   +|.+++|+.+|+++||+||||+|||+|.|||+|.......+..+++.+|++++.++.+.  ++..+.|+.+|
T Consensus       206 viaNG---nI~~~~d~~~~~~~tG~dGVM~arglL~NPa~F~~~~~~~~~~~~~~~~l~~~~e~~g~~~~~~~~~Hl~~m  282 (358)
T KOG2335|consen  206 VIANG---NILSLEDVERCLKYTGADGVMSARGLLYNPALFLTAGYGPTPWGCVEEYLDIAREFGGLSSFSLIRHHLFKM  282 (358)
T ss_pred             EEeeC---CcCcHHHHHHHHHHhCCceEEecchhhcCchhhccCCCCCCHHHHHHHHHHHHHHcCCCchhhHHHHHHHHH
Confidence            57899   99999999999999999999999999999999944122344569999999999999855  78899999999


Q ss_pred             hCCCCC--hHHHHHHHhcCChh
Q psy4403          79 LGSQQE--SPLGKKFLESQTLE   98 (101)
Q Consensus        79 ~~~~~~--~~~~~~i~~~~~~~   98 (101)
                      ++....  ..+|..+...++.+
T Consensus       283 ~~~~~~~~~~~r~~~~~~~~~~  304 (358)
T KOG2335|consen  283 LRPLLSIHQDLRRDLAALNSCE  304 (358)
T ss_pred             HHHHHhhhHHHHHHHhhccchh
Confidence            876443  44777777666444

>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA

Probab=99.80  E-value=5.7e-21  Score=140.65  Aligned_cols=97  Identities=18%  Similarity=0.232  Sum_probs=71.1

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccC---CC----CC-CCCH---HHHHHHHHHHHHHhcCCCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFS---PT----KG-IQDI---HQMIKEYLRYCVDYDNSAP   69 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~---~~----~~-~~~~---~~~~~~~l~~~~~~~~~~~   69 (101)
                      +++||   ||+|++|++++++.||||||||||||+.|||||+   ++    .. ..+.   .+++.+|++...++.+...
T Consensus       186 vi~NG---dI~s~~d~~~~~~~tg~dgvMigRgal~nP~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (309)
T PF01207_consen  186 VIANG---DIFSPEDAERMLEQTGADGVMIGRGALGNPWLFREIDQIKEGEPEPFPPIAERLDIILRHYDYMEEFYGEEK  262 (309)
T ss_dssp             EEEES---S--SHHHHHHHCCCH-SSEEEESHHHCC-CCHHCHHHCHHHHTT--S--HHHHHHHHHHHHHHHHHHHHCCH
T ss_pred             eEEcC---ccCCHHHHHHHHHhcCCcEEEEchhhhhcCHHhhhhhhhccCCCCCCCchhHHHHHHHHHHHHHHHHhccCc
Confidence            46888   9999999999999999999999999999999999   32    11 1222   2667888887777654333


Q ss_pred             c---HHHHHHhhhCCCCC-hHHHHHHHhcCChhhh
Q psy4403          70 N---SKYCVQSMLGSQQE-SPLGKKFLESQTLEQI  100 (101)
Q Consensus        70 ~---~k~~l~~~~~~~~~-~~~~~~i~~~~~~~e~  100 (101)
                      .   .+.++.+|+.++++ +++|+.+.++++.+|+
T Consensus       263 ~~~~~~k~~~~y~~~~~~~~~~r~~l~~~~~~~e~  297 (309)
T PF01207_consen  263 ALRQMRKHLKWYFKGFPGARKFRRELNKCKTLEEF  297 (309)
T ss_dssp             HHHHHHTTCCCCTTTSTTHHHHHHHHCCH-SHHHH
T ss_pred             hHHHHHHHHHHHHccCCcHHHHHHHHHhhCCHHHH
Confidence            2   45566777888888 9999999999998875

Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.

>TIGR00742 yjbN tRNA dihydrouridine synthase A

Probab=99.78  E-value=3.1e-19  Score=132.10  Aligned_cols=92  Identities=14%  Similarity=0.234  Sum_probs=71.1

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCC-----C---CCCHHHHHHHHHHHHHHhcCC---CC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTK-----G---IQDIHQMIKEYLRYCVDYDNS---AP   69 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~-----~---~~~~~~~~~~~l~~~~~~~~~---~~   69 (101)
                      +++||   ||+|++|+.++++  ||||||||||++.|||||.++.     +   ..+..+.+..+++++.++.+.   ..
T Consensus       198 Vi~NG---dI~s~~da~~~l~--g~dgVMigRgal~nP~if~~~~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~  272 (318)
T TIGR00742       198 IEING---GIKNSEQIKQHLS--HVDGVMVGREAYENPYLLANVDREIFNETDEILTRKEIVEQMLPYIEEYLSQGLSLN  272 (318)
T ss_pred             EEEEC---CcCCHHHHHHHHh--CCCEEEECHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHccchHH
Confidence            36788   9999999999995  8999999999999999998851     1   134556655555555444322   34


Q ss_pred             cHHHHHHhhhCCCCC-hHHHHHHHhcCCh
Q psy4403          70 NSKYCVQSMLGSQQE-SPLGKKFLESQTL   97 (101)
Q Consensus        70 ~~k~~l~~~~~~~~~-~~~~~~i~~~~~~   97 (101)
                      ..|+++.+|++++++ +++|.++.++.+.
T Consensus       273 ~~rk~~~~y~~g~~~~~~~r~~~~~~~~~  301 (318)
T TIGR00742       273 HITRHLLGLFQGKPGAKQWRRYLSENAPK  301 (318)
T ss_pred             HHHHHHHHHHccCCCHHHHHHHHHhcccC
Confidence            578999999999999 9999999886554

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family

Probab=99.76  E-value=1.8e-18  Score=127.62  Aligned_cols=97  Identities=18%  Similarity=0.228  Sum_probs=80.4

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCC-----C----CCCHH---HHHHHHHHHHHHhcCCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTK-----G----IQDIH---QMIKEYLRYCVDYDNSA   68 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~-----~----~~~~~---~~~~~~l~~~~~~~~~~   68 (101)
                      +++||   +|.|++|+.++++.+|||+||||||++.|||+|.++.     +    +.++.   +++.+|++++.++.++.
T Consensus       195 vi~nG---gI~~~~da~~~l~~~gad~VmigR~~l~~P~l~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~  271 (319)
T TIGR00737       195 VIGNG---DIFSPEDAKAMLETTGCDGVMIGRGALGNPWLFRQIEQYLTTGKYKPPPTFAEKLDAILRHLQLLADYYGES  271 (319)
T ss_pred             EEEeC---CCCCHHHHHHHHHhhCCCEEEEChhhhhCChHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHhCcc
Confidence            36788   9999999999999999999999999999999998751     2    12333   56888888887765442


Q ss_pred             ---CcHHHHHHhhhCCCCC-hHHHHHHHhcCChhhh
Q psy4403          69 ---PNSKYCVQSMLGSQQE-SPLGKKFLESQTLEQI  100 (101)
Q Consensus        69 ---~~~k~~l~~~~~~~~~-~~~~~~i~~~~~~~e~  100 (101)
                         ...|+++.+|++++++ +++|+.+.+++|++|+
T Consensus       272 ~~~~~~r~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  307 (319)
T TIGR00737       272 KGLRIARKHIAWYLKGFPGNAALRQTLNHASSFQEV  307 (319)
T ss_pred             hHHHHHHHHHHHHHhcCCcHHHHHHHHHcCCCHHHH
Confidence               3367888999999998 9999999999999986

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>KOG2334|consensus

Probab=99.69  E-value=1.8e-17  Score=125.17  Aligned_cols=99  Identities=45%  Similarity=0.691  Sum_probs=89.6

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHhhhC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYDNSAPNSKYCVQSMLG   80 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~~l~~~~~   80 (101)
                      +++||++-|+.-+.|++...+.|++++|||+|.|+.||++|+. +|.+|+.+.+++|++++.+|++.+.++||++.+++.
T Consensus       212 vi~ng~~~~~e~y~Di~~~~~~~~~~~vmiAR~A~~n~SiF~~-eG~~~~~~~~~~fl~~a~~~dn~~~ntkycl~~il~  290 (477)
T KOG2334|consen  212 VIVNGGSMDIEQYSDIEDFQEKTGADSVMIARAAESNPSIFRE-EGCLSEKEVIREFLRLAVQYDNHYGNTKYCLQRILR  290 (477)
T ss_pred             EeeccchhhHHhhhhHHHHHHHhccchhhhhHhhhcCCceeee-cCCchHHHHHHHHHHHHHHHhhcccchhHHHHHHhh
Confidence            4689976666669999999999999999999999999999999 888889999999999999999999999999999998


Q ss_pred             CCCC-hHHHHHHHhcCChhhh
Q psy4403          81 SQQE-SPLGKKFLESQTLEQI  100 (101)
Q Consensus        81 ~~~~-~~~~~~i~~~~~~~e~  100 (101)
                      +... -+.++.++.+.+.+++
T Consensus       291 ~~~~~~p~~~~~~~~~~~~~i  311 (477)
T KOG2334|consen  291 GIQEGCPRGKRIQAAQTVAQI  311 (477)
T ss_pred             hhhccCchhhHhhcchhHHHH
Confidence            8766 4788888888887765

>PRK11815 tRNA-dihydrouridine synthase A; Provisional

Probab=99.68  E-value=4.5e-17  Score=121.11  Aligned_cols=92  Identities=14%  Similarity=0.142  Sum_probs=72.7

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCC----C----CCCHHHHHHHHHHHHHHhcC---CCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTK----G----IQDIHQMIKEYLRYCVDYDN---SAP   69 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~----~----~~~~~~~~~~~l~~~~~~~~---~~~   69 (101)
                      +++||   ||+|++|++++++  +|||||||||++.|||+|.++.    +    ..++.+++..+++++.++..   ...
T Consensus       208 VI~nG---gI~s~eda~~~l~--~aDgVmIGRa~l~nP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (333)
T PRK11815        208 IEING---GIKTLEEAKEHLQ--HVDGVMIGRAAYHNPYLLAEVDRELFGEPAPPLSRSEVLEAMLPYIERHLAQGGRLN  282 (333)
T ss_pred             EEEEC---CcCCHHHHHHHHh--cCCEEEEcHHHHhCCHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHcCchHH
Confidence            46788   9999999999997  5999999999999999999851    2    13466776666666555432   234


Q ss_pred             cHHHHHHhhhCCCCC-hHHHHHHHhcCCh
Q psy4403          70 NSKYCVQSMLGSQQE-SPLGKKFLESQTL   97 (101)
Q Consensus        70 ~~k~~l~~~~~~~~~-~~~~~~i~~~~~~   97 (101)
                      ..|+++.+|++++++ +++|.++.++.+.
T Consensus       283 ~~rk~~~~y~~~~~~~~~~r~~~~~~~~~  311 (333)
T PRK11815        283 HITRHMLGLFQGLPGARAWRRYLSENAHK  311 (333)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHhhccc
Confidence            578899999999999 9999999887654

>KOG2333|consensus

Probab=99.50  E-value=1.6e-14  Score=111.00  Aligned_cols=65  Identities=25%  Similarity=0.297  Sum_probs=54.6

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcC-CCeeeeecccccCCCccCCCCCCCCH-------HHHHHHHHHHHHHhcCCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTN-ASSVMIARAAQDNCSIFSPTKGIQDI-------HQMIKEYLRYCVDYDNSA   68 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg-~dgvMigRgAl~nP~iF~~~~~~~~~-------~~~~~~~l~~~~~~~~~~   68 (101)
                      +++||   ||.|++|+.+-+..++ +++||||||||-.||||.+|.....|       -++++.|.++..+|.+..
T Consensus       457 liGNG---Di~S~eDw~~~~~~~p~v~svMIaRGALIKPWIFtEIkeqq~wD~sSteRldiL~df~nyGLeHWGSD  529 (614)
T KOG2333|consen  457 LIGNG---DILSWEDWYERLNQNPNVDSVMIARGALIKPWIFTEIKEQQHWDISSTERLDILKDFCNYGLEHWGSD  529 (614)
T ss_pred             eEecC---ccccHHHHHHHhhcCCCcceEEeeccccccchHhhhhhhhhcCCccchHHHHHHHHHHhhhhhhcCCc
Confidence            36777   9999999999999988 99999999999999999998432211       289999999999988653

>cd02911 arch_FMN Archeal FMN-binding domain

Probab=99.17  E-value=8.8e-12  Score=88.88  Aligned_cols=38  Identities=13%  Similarity=-0.001  Sum_probs=34.9

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      +++||   ||+|++|+.++++ +|||+||||||  +|||+|+++
T Consensus       194 VIgnG---gI~s~eda~~~l~-~GaD~VmiGR~--~~p~~~~~~  231 (233)
T cd02911         194 IIGNN---SVTTIESAKEMFS-YGADMVSVARA--SLPENIEWL  231 (233)
T ss_pred             EEEEC---CcCCHHHHHHHHH-cCCCEEEEcCC--CCchHHHHh
Confidence            46788   9999999999997 89999999999  999999874

This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=98.99  E-value=1.8e-10  Score=80.81  Aligned_cols=41  Identities=27%  Similarity=0.361  Sum_probs=37.9

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      +++||   +|.|++|+.++++.+|||+||+||+++.|||+|.++
T Consensus       186 vi~~G---gi~~~~d~~~~l~~~gad~V~igr~~l~~P~~~~~~  226 (231)
T cd02801         186 VIANG---DIFSLEDALRCLEQTGVDGVMIGRGALGNPWLFREI  226 (231)
T ss_pred             EEEeC---CCCCHHHHHHHHHhcCCCEEEEcHHhHhCCHHHHhh
Confidence            35777   999999999999999999999999999999999874

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=98.87  E-value=9.9e-10  Score=78.43  Aligned_cols=33  Identities=21%  Similarity=0.153  Sum_probs=30.4

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN   37 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n   37 (101)
                      +++||   ||+|++|+.++++ ||||+||||||++.|
T Consensus       194 IIgNG---gI~s~eda~e~l~-~GAd~VmvgR~~l~~  226 (231)
T TIGR00736       194 IIGNN---SIDDIESAKEMLK-AGADFVSVARAILKG  226 (231)
T ss_pred             EEEEC---CcCCHHHHHHHHH-hCCCeEEEcHhhccC
Confidence            46788   9999999999998 999999999999976

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=98.79  E-value=3.4e-09  Score=77.52  Aligned_cols=39  Identities=23%  Similarity=0.267  Sum_probs=36.0

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~   43 (101)
                      +++||   +|.|++|+.++++ +|||+|||||+++.|||+|.+
T Consensus       237 vi~~G---GI~s~~da~~~l~-~GAd~V~igr~~l~~p~~~~~  275 (300)
T TIGR01037       237 IIGVG---GITSFEDALEFLM-AGASAVQVGTAVYYRGFAFKK  275 (300)
T ss_pred             EEEEC---CCCCHHHHHHHHH-cCCCceeecHHHhcCchHHHH
Confidence            46777   8999999999997 899999999999999999986

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3

Probab=98.71  E-value=4.3e-09  Score=78.73  Aligned_cols=41  Identities=20%  Similarity=0.121  Sum_probs=38.0

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      |++||   +|.+++++++++++++||.||+||+++.|||++.++
T Consensus       288 vi~~G---~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l~~k~  328 (343)
T cd04734         288 VFHAG---RIRDPAEAEQALAAGHADMVGMTRAHIADPHLVAKA  328 (343)
T ss_pred             EEeeC---CCCCHHHHHHHHHcCCCCeeeecHHhHhCccHHHHH
Confidence            35677   999999999999999999999999999999999875

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.

>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain

Probab=98.58  E-value=1.5e-08  Score=74.33  Aligned_cols=40  Identities=20%  Similarity=0.338  Sum_probs=36.1

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc-CCCccCCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD-NCSIFSPT   44 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~-nP~iF~~~   44 (101)
                      +++||   +|.|.+|+.+++. +|||+|||++|++. +||+|+++
T Consensus       246 Iig~G---GI~s~~da~e~l~-aGA~~Vqv~ta~~~~gp~~~~~i  286 (294)
T cd04741         246 IIGVG---GVLDGRGAFRMRL-AGASAVQVGTALGKEGPKVFARI  286 (294)
T ss_pred             EEEeC---CCCCHHHHHHHHH-cCCCceeEchhhhhcCchHHHHH
Confidence            35777   8999999999997 99999999999995 99999873

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=98.48  E-value=9.5e-08  Score=69.70  Aligned_cols=39  Identities=23%  Similarity=0.212  Sum_probs=35.8

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~   43 (101)
                      +++||   +|.|++|+.++++ .|||+||+||+++.+||+|++
T Consensus       234 ii~~G---GI~~~~da~~~l~-~GAd~V~igra~l~~p~~~~~  272 (296)
T cd04740         234 IIGVG---GIASGEDALEFLM-AGASAVQVGTANFVDPEAFKE  272 (296)
T ss_pred             EEEEC---CCCCHHHHHHHHH-cCCCEEEEchhhhcChHHHHH
Confidence            35677   8999999999996 899999999999999999986

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=98.38  E-value=7.1e-08  Score=70.03  Aligned_cols=40  Identities=20%  Similarity=0.149  Sum_probs=36.2

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC-CCccCCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN-CSIFSPT   44 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n-P~iF~~~   44 (101)
                      ++++|   +|.|++|+.++++ .|||+||+||+++.| ||+|.++
T Consensus       246 iia~G---GI~~~~da~~~l~-~GAd~V~vg~a~~~~GP~~~~~i  286 (289)
T cd02810         246 IIGVG---GIDSGEDVLEMLM-AGASAVQVATALMWDGPDVIRKI  286 (289)
T ss_pred             EEEEC---CCCCHHHHHHHHH-cCccHheEcHHHHhcCccHHHHH
Confidence            35677   8999999999997 899999999999999 9999864

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=98.34  E-value=2.6e-07  Score=67.66  Aligned_cols=39  Identities=21%  Similarity=0.189  Sum_probs=35.6

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~   43 (101)
                      +++||   +|.|++|+.++++ .|||.|||||+++.+|++|.+
T Consensus       237 vi~~G---GI~~~~da~~~l~-aGAd~V~igr~ll~~P~~~~~  275 (301)
T PRK07259        237 IIGMG---GISSAEDAIEFIM-AGASAVQVGTANFYDPYAFPK  275 (301)
T ss_pred             EEEEC---CCCCHHHHHHHHH-cCCCceeEcHHHhcCcHHHHH
Confidence            35677   8999999999996 899999999999999999986

>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain

Probab=98.34  E-value=1.5e-07  Score=71.32  Aligned_cols=40  Identities=10%  Similarity=0.021  Sum_probs=37.6

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      ++||   +|.+++++++++++++||.||+||+++.||++++++
T Consensus       309 i~~G---~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~  348 (382)
T cd02931         309 IMAG---RMEDPELASEAINEGIADMISLGRPLLADPDVVNKI  348 (382)
T ss_pred             EEeC---CCCCHHHHHHHHHcCCCCeeeechHhHhCccHHHHH
Confidence            5677   999999999999999999999999999999999886

Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.

>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain

Probab=98.32  E-value=1.6e-07  Score=70.91  Aligned_cols=41  Identities=7%  Similarity=-0.021  Sum_probs=37.8

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      ++++|   +|.++++++++++.++||.||+||++|+|||++.++
T Consensus       292 vi~~G---~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~k~  332 (370)
T cd02929         292 VVGVG---RFTSPDKMVEVVKSGILDLIGAARPSIADPFLPKKI  332 (370)
T ss_pred             EEEeC---CCCCHHHHHHHHHcCCCCeeeechHhhhCchHHHHH
Confidence            35667   999999999999999999999999999999999886

TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.

>PRK13523 NADPH dehydrogenase NamA; Provisional

Probab=98.31  E-value=1.2e-07  Score=70.96  Aligned_cols=41  Identities=15%  Similarity=0.062  Sum_probs=37.5

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      |++||   +|.|++++++++++++||.||+||++++||+++.++
T Consensus       278 Vi~~G---~i~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~  318 (337)
T PRK13523        278 TGAVG---LITSGAQAEEILQNNRADLIFIGRELLRNPYFPRIA  318 (337)
T ss_pred             EEEeC---CCCCHHHHHHHHHcCCCChHHhhHHHHhCccHHHHH
Confidence            35677   999999999999999999999999999999998774

>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain

Probab=98.30  E-value=1.3e-07  Score=70.82  Aligned_cols=40  Identities=20%  Similarity=0.105  Sum_probs=37.4

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      ++||   ++.+++++++++++++||.||+||+++.|||+|+++
T Consensus       280 i~~G---~i~~~~~a~~~i~~g~~D~V~~gR~~l~dP~~~~k~  319 (353)
T cd02930         280 IASN---RINTPEVAERLLADGDADMVSMARPFLADPDFVAKA  319 (353)
T ss_pred             EEcC---CCCCHHHHHHHHHCCCCChhHhhHHHHHCccHHHHH
Confidence            4667   999999999999999999999999999999999875

DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi

>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2

Probab=98.26  E-value=3.1e-07  Score=68.45  Aligned_cols=40  Identities=10%  Similarity=0.042  Sum_probs=36.7

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~   43 (101)
                      |+++|   +|.+++++++++++..||.||+||++++||+++.+
T Consensus       295 Vi~~G---~i~t~~~a~~~l~~g~aD~V~lgR~~iadP~~~~k  334 (338)
T cd04733         295 LMVTG---GFRTRAAMEQALASGAVDGIGLARPLALEPDLPNK  334 (338)
T ss_pred             EEEeC---CCCCHHHHHHHHHcCCCCeeeeChHhhhCccHHHH
Confidence            35677   89999999999999999999999999999999875

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=98.26  E-value=2.8e-07  Score=67.71  Aligned_cols=40  Identities=20%  Similarity=0.259  Sum_probs=35.8

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc-CCCccCCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD-NCSIFSPT   44 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~-nP~iF~~~   44 (101)
                      +++||   +|.|.+|+.+++. +|||+|||+||++. .|.+|.++
T Consensus       255 Iig~G---GI~~~~da~~~l~-aGA~~V~i~ta~~~~g~~~~~~i  295 (299)
T cd02940         255 ISGIG---GIESWEDAAEFLL-LGASVVQVCTAVMNQGFTIVDDM  295 (299)
T ss_pred             EEEEC---CCCCHHHHHHHHH-cCCChheEceeecccCCcHHHHH
Confidence            35777   8999999999996 99999999999999 99998764

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=98.19  E-value=5.6e-07  Score=73.38  Aligned_cols=40  Identities=15%  Similarity=0.071  Sum_probs=36.4

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCC-CccCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNC-SIFSP   43 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP-~iF~~   43 (101)
                      |++||   +|++++++++++++++||.||+||++|+|| |+|..
T Consensus       690 v~~~G---~i~~~~~a~~~l~~g~~D~v~~gR~~l~dP~~~~~~  730 (765)
T PRK08255        690 TIAVG---AISEADHVNSIIAAGRADLCALARPHLADPAWTLHE  730 (765)
T ss_pred             EEEeC---CCCCHHHHHHHHHcCCcceeeEcHHHHhCccHHHHH
Confidence            35677   999999999999999999999999999999 77765

>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain

Probab=98.17  E-value=5.6e-07  Score=66.30  Aligned_cols=39  Identities=21%  Similarity=0.103  Sum_probs=36.0

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~   43 (101)
                      ++||   +|.|+++++++++..+||.||+||+++.||+++.+
T Consensus       285 i~~G---gi~t~~~a~~~l~~g~aD~V~igR~~ladP~l~~k  323 (327)
T cd02803         285 IAVG---GIRDPEVAEEILAEGKADLVALGRALLADPDLPNK  323 (327)
T ss_pred             EEeC---CCCCHHHHHHHHHCCCCCeeeecHHHHhCccHHHH
Confidence            5667   89999999999999999999999999999999865

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2

Probab=98.16  E-value=3e-07  Score=68.39  Aligned_cols=39  Identities=13%  Similarity=-0.052  Sum_probs=34.9

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC-CCccCCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN-CSIFSPT   44 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n-P~iF~~~   44 (101)
                      +++|   +|.|.+|+.+++. +|||.|||||+++.+ ||+|.++
T Consensus       284 i~~G---GI~t~~da~e~l~-aGAd~V~vg~~~~~~gP~~~~~i  323 (327)
T cd04738         284 IGVG---GISSGEDAYEKIR-AGASLVQLYTGLVYEGPGLVKRI  323 (327)
T ss_pred             EEEC---CCCCHHHHHHHHH-cCCCHHhccHHHHhhCcHHHHHH
Confidence            4666   8999999999997 999999999999875 9999864

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.

>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4

Probab=98.15  E-value=3.6e-07  Score=68.59  Aligned_cols=40  Identities=18%  Similarity=0.076  Sum_probs=36.8

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      +++||   +|+|+++++++++. |||.||+||+++.||+++.++
T Consensus       287 Vi~~G---gi~t~e~ae~~l~~-gaD~V~~gR~liadPdl~~k~  326 (353)
T cd04735         287 LIAVG---SINTPDDALEALET-GADLVAIGRGLLVDPDWVEKI  326 (353)
T ss_pred             EEEEC---CCCCHHHHHHHHHc-CCChHHHhHHHHhCccHHHHH
Confidence            35777   89999999999998 999999999999999999875

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK05286 dihydroorotate dehydrogenase 2; Reviewed

Probab=98.14  E-value=5.6e-07  Score=67.39  Aligned_cols=38  Identities=16%  Similarity=-0.043  Sum_probs=34.5

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc-CCCccCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD-NCSIFSP   43 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~-nP~iF~~   43 (101)
                      +++|   +|.|.+|+.++++ .|||.|||||+++. +||+|.+
T Consensus       293 ig~G---GI~s~eda~e~l~-aGAd~V~v~~~~~~~gP~~~~~  331 (344)
T PRK05286        293 IGVG---GIDSAEDAYEKIR-AGASLVQIYSGLIYEGPGLVKE  331 (344)
T ss_pred             EEEC---CCCCHHHHHHHHH-cCCCHHHHHHHHHHhCchHHHH
Confidence            5666   8999999999997 99999999999987 5999987

>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain

Probab=98.07  E-value=1.4e-06  Score=65.20  Aligned_cols=40  Identities=18%  Similarity=0.052  Sum_probs=36.4

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      ++++|   +|. ++++++++++.+||.||+||++++||+++.++
T Consensus       288 vi~~G---~i~-~~~a~~~l~~g~~D~V~~gR~~ladP~~~~k~  327 (338)
T cd02933         288 LIAAG---GYD-AESAEAALADGKADLVAFGRPFIANPDLVERL  327 (338)
T ss_pred             EEEEC---CCC-HHHHHHHHHcCCCCEEEeCHhhhhCcCHHHHH
Confidence            35677   897 99999999999999999999999999999875

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=98.07  E-value=2.1e-06  Score=61.35  Aligned_cols=35  Identities=9%  Similarity=0.190  Sum_probs=30.4

Q ss_pred             CccCCCCCCCCCHHHHHHHHH--hcCCCeeeeecccccCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKA--DTNASSVMIARAAQDNC   38 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~--~tg~dgvMigRgAl~nP   38 (101)
                      +++||   +|+|++|+.++.+  .+|||||||||+++.++
T Consensus       193 viasG---Gi~s~~D~~~l~~~~~~GvdgV~igra~~~g~  229 (241)
T PRK14024        193 VVASG---GVSSLDDLRALAELVPLGVEGAIVGKALYAGA  229 (241)
T ss_pred             EEEeC---CCCCHHHHHHHhhhccCCccEEEEeHHHHcCC
Confidence            35777   9999999999974  58999999999998775

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated

Probab=98.05  E-value=1.4e-06  Score=66.65  Aligned_cols=40  Identities=20%  Similarity=0.251  Sum_probs=35.3

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc-CCCccCCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD-NCSIFSPT   44 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~-nP~iF~~~   44 (101)
                      +++||   +|.|.+|+.+++. +|||+|||+||++. .|.++.++
T Consensus       256 Iig~G---GI~s~~da~e~i~-aGA~~Vqi~ta~~~~gp~ii~~I  296 (420)
T PRK08318        256 ISGIG---GIETWRDAAEFIL-LGAGTVQVCTAAMQYGFRIVEDM  296 (420)
T ss_pred             EEeec---CcCCHHHHHHHHH-hCCChheeeeeeccCCchhHHHH
Confidence            35677   9999999999997 99999999999999 78887764

>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain

Probab=97.96  E-value=3.3e-06  Score=62.90  Aligned_cols=39  Identities=18%  Similarity=-0.031  Sum_probs=35.5

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~   43 (101)
                      +++|   +|.|+++++++++...||.||+||+++.||++..+
T Consensus       294 i~~G---~i~t~~~a~~~l~~g~aD~V~~gR~~i~dP~~~~k  332 (336)
T cd02932         294 IAVG---LITDPEQAEAILESGRADLVALGRELLRNPYWPLH  332 (336)
T ss_pred             EEeC---CCCCHHHHHHHHHcCCCCeehhhHHHHhCccHHHH
Confidence            4666   89999999999999999999999999999998654

YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.

>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5

Probab=97.95  E-value=2e-06  Score=65.00  Aligned_cols=35  Identities=11%  Similarity=0.055  Sum_probs=32.8

Q ss_pred             CCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403          10 IVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus        10 I~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      +.|+++++++++..+||.||+||++|.|||++.++
T Consensus       307 ~~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~~k~  341 (361)
T cd04747         307 PASLDRLLERLERGEFDLVAVGRALLSDPAWVAKV  341 (361)
T ss_pred             cCCHHHHHHHHHCCCCCeehhhHHHHhCcHHHHHH
Confidence            37999999999999999999999999999999875

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=97.89  E-value=8.8e-06  Score=57.26  Aligned_cols=34  Identities=21%  Similarity=0.278  Sum_probs=29.8

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN   37 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n   37 (101)
                      +++||   +|.|++|++++++.+||+|||+||+++..
T Consensus       193 via~G---Gi~~~~di~~~~~~g~~~gv~vg~a~~~~  226 (233)
T PRK00748        193 VIASG---GVSSLDDIKALKGLGAVEGVIVGRALYEG  226 (233)
T ss_pred             EEEeC---CCCCHHHHHHHHHcCCccEEEEEHHHHcC
Confidence            35777   89999999999998889999999998754

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=97.81  E-value=7.8e-06  Score=58.57  Aligned_cols=39  Identities=23%  Similarity=0.204  Sum_probs=35.4

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      .++|   .|.|.+|++++++ +||++|+||++++.||++|.++
T Consensus        78 ~~~G---Gi~s~~~~~~~l~-~Ga~~Viigt~~l~~p~~~~ei  116 (253)
T PRK02083         78 TVGG---GIRSVEDARRLLR-AGADKVSINSAAVANPELISEA  116 (253)
T ss_pred             EeeC---CCCCHHHHHHHHH-cCCCEEEEChhHhhCcHHHHHH
Confidence            4566   8999999999998 8999999999999999999775

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=97.80  E-value=1.4e-05  Score=59.52  Aligned_cols=39  Identities=21%  Similarity=0.243  Sum_probs=33.4

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC-CCccCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN-CSIFSP   43 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n-P~iF~~   43 (101)
                      +++||   +|+|.+|+.+++. +||++|||+|+++.+ |.++.+
T Consensus       242 Iig~G---GI~s~~Da~e~l~-aGA~~V~v~t~~~~~g~~~~~~  281 (334)
T PRK07565        242 LAATT---GVHDAEDVIKMLL-AGADVVMIASALLRHGPDYIGT  281 (334)
T ss_pred             EEEEC---CCCCHHHHHHHHH-cCCCceeeehHHhhhCcHHHHH
Confidence            35677   8999999999996 999999999999985 766554

>cd04732 HisA HisA

Probab=97.79  E-value=1.8e-05  Score=55.66  Aligned_cols=34  Identities=18%  Similarity=0.246  Sum_probs=30.6

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCS   39 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~   39 (101)
                      ++||   +|.+.+|+.++++ +||+|||+||+++.+|-
T Consensus       194 i~~G---Gi~~~~di~~~~~-~Ga~gv~vg~~~~~~~~  227 (234)
T cd04732         194 IASG---GVSSLDDIKALKE-LGVAGVIVGKALYEGKI  227 (234)
T ss_pred             EEec---CCCCHHHHHHHHH-CCCCEEEEeHHHHcCCC
Confidence            5677   8999999999997 69999999999999873

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=97.74  E-value=1.1e-05  Score=60.16  Aligned_cols=39  Identities=21%  Similarity=0.281  Sum_probs=34.3

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC-CCccCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN-CSIFSP   43 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n-P~iF~~   43 (101)
                      +++||   +|.|.+|+.+++. +||++|||+++++.+ |.++.+
T Consensus       240 Iig~G---GI~s~~Da~e~l~-aGA~~Vqv~ta~~~~gp~~~~~  279 (325)
T cd04739         240 LAASG---GVHDAEDVVKYLL-AGADVVMTTSALLRHGPDYIGT  279 (325)
T ss_pred             EEEEC---CCCCHHHHHHHHH-cCCCeeEEehhhhhcCchHHHH
Confidence            35677   8999999999996 999999999999985 887765

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=97.73  E-value=2.3e-05  Score=55.19  Aligned_cols=32  Identities=16%  Similarity=0.305  Sum_probs=28.6

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN   37 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n   37 (101)
                      +++|   +|.|.+|++++++ +||||||||++++.+
T Consensus       193 ia~G---Gi~~~~di~~~~~-~Gadgv~ig~a~~~~  224 (230)
T TIGR00007       193 IASG---GVSSIDDLIALKK-LGVYGVIVGKALYEG  224 (230)
T ss_pred             EEeC---CCCCHHHHHHHHH-CCCCEEEEeHHHHcC
Confidence            5677   8999999999885 999999999999876

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=97.65  E-value=1.8e-05  Score=56.23  Aligned_cols=39  Identities=21%  Similarity=0.208  Sum_probs=35.0

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      +++|   .|.|.+|++++++ +||++|++||+++.||++|.++
T Consensus        75 ~~~G---GI~s~~d~~~~l~-~G~~~v~ig~~~~~~p~~~~~i  113 (243)
T cd04731          75 TVGG---GIRSLEDARRLLR-AGADKVSINSAAVENPELIREI  113 (243)
T ss_pred             EEeC---CCCCHHHHHHHHH-cCCceEEECchhhhChHHHHHH
Confidence            4567   8999999999996 7999999999999999998765

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=97.58  E-value=5e-05  Score=53.95  Aligned_cols=31  Identities=13%  Similarity=0.028  Sum_probs=28.2

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQ   35 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl   35 (101)
                      ++||   +|+|++|+.++++.+|||+||+||+..
T Consensus       197 ia~G---Gi~~~~di~~~l~~~g~dgv~vg~al~  227 (243)
T cd04731         197 IASG---GAGKPEHFVEAFEEGGADAALAASIFH  227 (243)
T ss_pred             EEeC---CCCCHHHHHHHHHhCCCCEEEEeHHHH
Confidence            5677   899999999999999999999999864

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=97.50  E-value=4.8e-05  Score=55.92  Aligned_cols=34  Identities=26%  Similarity=0.249  Sum_probs=29.7

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~   43 (101)
                      +++||   +|++..|+.+++. +|||+|||||     ||+|..
T Consensus       230 via~G---GI~~~~d~~kal~-lGAd~V~ig~-----~~l~~~  263 (299)
T cd02809         230 VLLDG---GIRRGTDVLKALA-LGADAVLIGR-----PFLYGL  263 (299)
T ss_pred             EEEeC---CCCCHHHHHHHHH-cCCCEEEEcH-----HHHHHH
Confidence            36777   8999999999996 9999999999     777764

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.48  E-value=6e-05  Score=53.37  Aligned_cols=38  Identities=13%  Similarity=0.191  Sum_probs=32.7

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~   43 (101)
                      +++|   +|+|++|+.++ ..+||+|||+|++++.+|.-+.+
T Consensus       197 ia~G---GI~~~~di~~~-~~~Ga~gv~vgsa~~~~~~~~~~  234 (241)
T PRK13585        197 IASG---GVTTLDDLRAL-KEAGAAGVVVGSALYKGKFTLEE  234 (241)
T ss_pred             EEeC---CCCCHHHHHHH-HHcCCCEEEEEHHHhcCCcCHHH
Confidence            5677   89999999995 67999999999999999876543

>cd04732 HisA HisA

Probab=97.27  E-value=0.0001  Score=51.84  Aligned_cols=35  Identities=23%  Similarity=0.209  Sum_probs=32.4

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      .|.|++|++++++ +|||.||||+.++.||+++.++
T Consensus        81 gI~~~e~~~~~~~-~Gad~vvigs~~l~dp~~~~~i  115 (234)
T cd04732          81 GIRSLEDIERLLD-LGVSRVIIGTAAVKNPELVKEL  115 (234)
T ss_pred             CcCCHHHHHHHHH-cCCCEEEECchHHhChHHHHHH
Confidence            7999999999995 8999999999999999988764

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=97.24  E-value=0.00025  Score=51.17  Aligned_cols=33  Identities=9%  Similarity=-0.041  Sum_probs=28.3

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD   36 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~   36 (101)
                      +++||   +|.|.+|+.++++++||+||++|++...
T Consensus       199 vIasG---Gv~s~eD~~~l~~~~GvdgVivg~a~~~  231 (258)
T PRK01033        199 LIALG---GAGSLDDIVEAILNLGADAAAAGSLFVF  231 (258)
T ss_pred             EEEeC---CCCCHHHHHHHHHHCCCCEEEEcceeee
Confidence            35777   8999999999999999999998886543

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=97.24  E-value=0.00012  Score=52.70  Aligned_cols=35  Identities=23%  Similarity=0.159  Sum_probs=32.5

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      .|+|.+|++++++ .||++|++|+.++.||+++.++
T Consensus        82 Gi~s~~d~~~~~~-~Ga~~vivgt~~~~~p~~~~~~  116 (254)
T TIGR00735        82 GIKSIEDVDKLLR-AGADKVSINTAAVKNPELIYEL  116 (254)
T ss_pred             CCCCHHHHHHHHH-cCCCEEEEChhHhhChHHHHHH
Confidence            7999999999997 7999999999999999988764

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=97.17  E-value=0.00026  Score=50.71  Aligned_cols=32  Identities=13%  Similarity=0.100  Sum_probs=28.5

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQ   35 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl   35 (101)
                      ++++|   +|.|.+|+.++++.+||+|||+|+...
T Consensus       200 via~G---Gv~s~~d~~~~~~~~G~~gvivg~al~  231 (253)
T PRK02083        200 VIASG---GAGNLEHFVEAFTEGGADAALAASIFH  231 (253)
T ss_pred             EEEEC---CCCCHHHHHHHHHhCCccEEeEhHHHH
Confidence            35677   899999999999999999999999764

>TIGR02708 L_lactate_ox L-lactate oxidase

Probab=97.05  E-value=0.00039  Score=52.87  Aligned_cols=33  Identities=15%  Similarity=0.064  Sum_probs=28.5

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN   37 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n   37 (101)
                      +++||   +|++..|+.+.+. +|||+|||||..|.-
T Consensus       286 vi~dG---GIr~g~Dv~KaLa-lGAd~V~igR~~l~~  318 (367)
T TIGR02708       286 IVFDS---GVRRGQHVFKALA-SGADLVALGRPVIYG  318 (367)
T ss_pred             EEeeC---CcCCHHHHHHHHH-cCCCEEEEcHHHHHH
Confidence            35677   8999999999998 999999999976643

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=96.76  E-value=0.0013  Score=46.32  Aligned_cols=28  Identities=14%  Similarity=0.084  Sum_probs=25.1

Q ss_pred             CCCCCCHHHHHHHHHhcCCCeeeeeccc
Q psy4403           7 SKEIVDYGGILKFKADTNASSVMIARAA   34 (101)
Q Consensus         7 sGDI~s~~d~~~~~~~tg~dgvMigRgA   34 (101)
                      +|+|.|.+|+.++++.+||||||+|.+.
T Consensus       203 ~GGi~s~~di~~~l~~~gadgV~vg~a~  230 (232)
T TIGR03572       203 LGGAGSLDDLVEVALEAGASAVAAASLF  230 (232)
T ss_pred             ECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence            4489999999998999999999999864

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional

Probab=96.74  E-value=0.0038  Score=46.18  Aligned_cols=51  Identities=14%  Similarity=0.169  Sum_probs=39.2

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHHhcC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYDN   66 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~~~   66 (101)
                      ||.|   .|.|++|+..+++ +||+||++|+++...+          .+.+..+++.+....|.+
T Consensus       209 ~AeG---GI~TPedaa~vme-~GAdgVaVGSaI~ks~----------dP~~~akafv~ai~~~~~  259 (293)
T PRK04180        209 FAAG---GIATPADAALMMQ-LGADGVFVGSGIFKSG----------DPEKRARAIVEATTHYDD  259 (293)
T ss_pred             EEeC---CCCCHHHHHHHHH-hCCCEEEEcHHhhcCC----------CHHHHHHHHHHHHHHcCC
Confidence            4778   8999999999996 9999999999876432          234566777776666654

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=96.68  E-value=0.001  Score=50.29  Aligned_cols=35  Identities=14%  Similarity=0.089  Sum_probs=30.0

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSI   40 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i   40 (101)
                      +++|   +|++..|+.+++. .||++|||||..+.-...
T Consensus       280 i~dG---GIr~g~Di~kaLa-lGA~~V~iGr~~l~~la~  314 (351)
T cd04737         280 IFDS---GVRRGEHVFKALA-SGADAVAVGRPVLYGLAL  314 (351)
T ss_pred             EEEC---CCCCHHHHHHHHH-cCCCEEEECHHHHHHHhh
Confidence            5677   8999999999998 999999999977765543

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=96.44  E-value=0.0019  Score=46.37  Aligned_cols=30  Identities=13%  Similarity=-0.007  Sum_probs=27.2

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAA   34 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgA   34 (101)
                      +++|   +|.|++|+.++++.++|||||+|+..
T Consensus       203 ia~G---Gi~s~~di~~~~~~g~~dgv~~g~a~  232 (254)
T TIGR00735       203 IASG---GAGKPEHFYEAFTKGKADAALAASVF  232 (254)
T ss_pred             EEeC---CCCCHHHHHHHHHcCCcceeeEhHHH
Confidence            5677   89999999999999889999999975

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1

Probab=96.34  E-value=0.0033  Score=46.35  Aligned_cols=51  Identities=14%  Similarity=0.204  Sum_probs=37.9

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHHhcC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYDN   66 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~~~   66 (101)
                      ||.|   .|.|++|+..+++ +|||||++|+++...+          .+.+..+++.+....|.+
T Consensus       203 fAiG---GI~TPedAa~~me-lGAdGVaVGSaI~ks~----------dP~~~akafv~ai~~~~~  253 (287)
T TIGR00343       203 FAAG---GVATPADAALMMQ-LGADGVFVGSGIFKSS----------NPEKLAKAIVEATTHYDN  253 (287)
T ss_pred             eccC---CCCCHHHHHHHHH-cCCCEEEEhHHhhcCC----------CHHHHHHHHHHHHHHcCC
Confidence            4777   8999999999997 8999999999876422          234556666665555554

This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.

>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []

Probab=96.29  E-value=0.0018  Score=48.52  Aligned_cols=39  Identities=15%  Similarity=0.014  Sum_probs=33.7

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~   43 (101)
                      +++|   .|.+++.+++.+++..||.|.+||+++.||.+...
T Consensus       295 i~~G---~i~~~~~ae~~l~~g~~DlV~~gR~~ladPd~~~k  333 (341)
T PF00724_consen  295 IGVG---GIRTPEQAEKALEEGKADLVAMGRPLLADPDLPNK  333 (341)
T ss_dssp             EEES---STTHHHHHHHHHHTTSTSEEEESHHHHH-TTHHHH
T ss_pred             EEEe---eecchhhhHHHHhcCCceEeeccHHHHhCchHHHH
Confidence            4566   89999999999999999999999999999987654

It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

Probab=96.26  E-value=0.0036  Score=46.06  Aligned_cols=50  Identities=10%  Similarity=0.132  Sum_probs=36.5

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHHhc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYD   65 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~~   65 (101)
                      +|.|   .|.+++++.++++ +||+||+++++++.-+          .+.+..+++.+....|.
T Consensus       200 iAeG---GI~Tpena~~v~e-~GAdgVaVGSAI~~a~----------dP~~~tk~f~~ai~~~~  249 (283)
T cd04727         200 FAAG---GVATPADAALMMQ-LGADGVFVGSGIFKSE----------NPEKRARAIVEAVTHYD  249 (283)
T ss_pred             EEeC---CCCCHHHHHHHHH-cCCCEEEEcHHhhcCC----------CHHHHHHHHHHHHHhcC
Confidence            4788   8999999999996 8999999999887432          12345555555444443

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=96.26  E-value=0.0035  Score=47.73  Aligned_cols=25  Identities=24%  Similarity=0.347  Sum_probs=23.7

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeeccc
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAA   34 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgA   34 (101)
                      +|.|+++++++++ +|||+||+|||.
T Consensus       194 ~V~t~e~A~~l~~-aGAD~V~VG~G~  218 (368)
T PRK08649        194 GCVTYTTALHLMR-TGAAGVLVGIGP  218 (368)
T ss_pred             CCCCHHHHHHHHH-cCCCEEEECCCC
Confidence            8999999999996 999999999986

>PRK10605 N-ethylmaleimide reductase; Provisional

Probab=96.25  E-value=0.0031  Score=47.75  Aligned_cols=39  Identities=10%  Similarity=-0.008  Sum_probs=33.9

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      +++|   .+ |++.+++.+++..||.|++||+++.||.+...+
T Consensus       296 ~~~G---~~-~~~~ae~~i~~G~~D~V~~gR~~iadPd~~~k~  334 (362)
T PRK10605        296 IGAG---AY-TAEKAETLIGKGLIDAVAFGRDYIANPDLVARL  334 (362)
T ss_pred             EEeC---CC-CHHHHHHHHHcCCCCEEEECHHhhhCccHHHHH
Confidence            3455   54 999999999988899999999999999988775

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=96.25  E-value=0.0019  Score=45.72  Aligned_cols=35  Identities=17%  Similarity=0.135  Sum_probs=32.3

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      .|.|.+|++.+++ .||++|++|..++.+|.+|.++
T Consensus        84 Gi~~~~~~~~~~~-~Ga~~v~iGs~~~~~~~~~~~i  118 (241)
T PRK13585         84 GIRSAEDAASLLD-LGVDRVILGTAAVENPEIVREL  118 (241)
T ss_pred             CcCCHHHHHHHHH-cCCCEEEEChHHhhChHHHHHH
Confidence            7999999999995 8999999999999999988764

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=96.12  E-value=0.0055  Score=46.71  Aligned_cols=29  Identities=21%  Similarity=0.376  Sum_probs=26.2

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNC   38 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP   38 (101)
                      +|.|++++.++++ +|||+||+|||.-...
T Consensus       195 ~V~t~e~A~~~~~-aGaDgV~~G~gg~~~~  223 (369)
T TIGR01304       195 GVNDYTTALHLMR-TGAAGVIVGPGGANTT  223 (369)
T ss_pred             CCCCHHHHHHHHH-cCCCEEEECCCCCccc
Confidence            8999999999997 9999999999986543

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2

Probab=96.07  E-value=0.0029  Score=47.32  Aligned_cols=33  Identities=24%  Similarity=0.101  Sum_probs=28.8

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNC   38 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP   38 (101)
                      +++|   .|++.+|+.+++. .|||.||+||+.|..=
T Consensus       258 IasG---GI~~~~di~kaLa-lGAd~V~igr~~L~~~  290 (333)
T TIGR02151       258 IASG---GLRTGLDVAKAIA-LGADAVGMARPFLKAA  290 (333)
T ss_pred             EEEC---CCCCHHHHHHHHH-hCCCeehhhHHHHHHH
Confidence            5667   7999999999998 7999999999988654

Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=95.94  E-value=0.0053  Score=43.01  Aligned_cols=35  Identities=20%  Similarity=0.103  Sum_probs=28.7

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSI   40 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i   40 (101)
                      +++|   .|.+++|+.++++ .|||||++|++.+...++
T Consensus       181 ia~G---GI~~~~~~~~~l~-~GadgV~vGsal~~~~~~  215 (219)
T cd04729         181 IAEG---RINSPEQAAKALE-LGADAVVVGSAITRPEHI  215 (219)
T ss_pred             EEeC---CCCCHHHHHHHHH-CCCCEEEEchHHhChHhH
Confidence            4556   7999999999997 789999999997655443

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=95.94  E-value=0.007  Score=45.21  Aligned_cols=35  Identities=26%  Similarity=0.278  Sum_probs=30.3

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCS   39 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~   39 (101)
                      ++|+|   .|.+..|+.+.++ .||++||+|+..++-.-
T Consensus       200 VIA~G---GI~~~~di~kAla-~GA~~VmiGt~fa~t~E  234 (325)
T cd00381         200 VIADG---GIRTSGDIVKALA-AGADAVMLGSLLAGTDE  234 (325)
T ss_pred             EEecC---CCCCHHHHHHHHH-cCCCEEEecchhccccc
Confidence            35777   8999999999996 99999999998887553

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=95.84  E-value=0.0073  Score=45.35  Aligned_cols=32  Identities=28%  Similarity=0.201  Sum_probs=27.6

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD   36 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~   36 (101)
                      ++|+|   .|.++.|+.+++.. ||++||+|+..++
T Consensus       204 VIAdG---GI~~~~Di~KaLa~-GA~aV~vG~~~~~  235 (326)
T PRK05458        204 IIADG---GIRTHGDIAKSIRF-GATMVMIGSLFAG  235 (326)
T ss_pred             EEEeC---CCCCHHHHHHHHHh-CCCEEEechhhcC
Confidence            46778   79999999999976 9999999977664

>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed

Probab=95.83  E-value=0.0036  Score=46.41  Aligned_cols=38  Identities=16%  Similarity=0.127  Sum_probs=34.0

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc-CCCccCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD-NCSIFSP   43 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~-nP~iF~~   43 (101)
                      +++|   .|.|.+|+.+++ ..||+.||++-+++. +|.+|.+
T Consensus       245 ig~G---GI~s~~da~e~i-~aGA~~Vqv~ta~~~~gp~~~~~  283 (310)
T PRK02506        245 IGTG---GVKTGRDAFEHI-LCGASMVQVGTALHKEGPAVFER  283 (310)
T ss_pred             EEEC---CCCCHHHHHHHH-HcCCCHHhhhHHHHHhChHHHHH
Confidence            5667   799999999999 799999999999997 6988876

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=95.78  E-value=0.0089  Score=41.91  Aligned_cols=33  Identities=24%  Similarity=0.149  Sum_probs=28.9

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNC   38 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP   38 (101)
                      +++|   .|.+++|+.++++ .|+||||+|++.+..+
T Consensus       160 i~~G---GI~~~~~v~~~l~-~GadgV~vgS~l~~~~  192 (236)
T cd04730         160 IAAG---GIADGRGIAAALA-LGADGVQMGTRFLATE  192 (236)
T ss_pred             EEEC---CCCCHHHHHHHHH-cCCcEEEEchhhhcCc
Confidence            4566   7999999999995 8999999999998776

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=95.48  E-value=0.0057  Score=43.09  Aligned_cols=35  Identities=23%  Similarity=0.203  Sum_probs=30.7

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      +|.|.+|++++.+ .||++|++|++++.||.++.++
T Consensus        82 gi~~~~d~~~~~~-~G~~~vilg~~~l~~~~~~~~~  116 (232)
T TIGR03572        82 GIRSLEDAKKLLS-LGADKVSINTAALENPDLIEEA  116 (232)
T ss_pred             CCCCHHHHHHHHH-cCCCEEEEChhHhcCHHHHHHH
Confidence            7999999999764 6999999999999999866553

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=95.47  E-value=0.0076  Score=42.89  Aligned_cols=34  Identities=15%  Similarity=0.182  Sum_probs=30.4

Q ss_pred             CCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403           8 KEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         8 GDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~   43 (101)
                      |.|.|.+|++++++ .|+++|.||..++ ||.+..+
T Consensus        80 GGIrs~edv~~l~~-~G~~~vivGtaa~-~~~~l~~  113 (228)
T PRK04128         80 GGLRTYESIKDAYE-IGVENVIIGTKAF-DLEFLEK  113 (228)
T ss_pred             CCCCCHHHHHHHHH-CCCCEEEECchhc-CHHHHHH
Confidence            37999999999986 6999999999999 9997765

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=95.43  E-value=0.0092  Score=41.80  Aligned_cols=27  Identities=19%  Similarity=0.058  Sum_probs=24.0

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQD   36 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~   36 (101)
                      .|.+++|+.++++ .|+|+|++|++.+.
T Consensus       181 GI~t~~~~~~~l~-~GadgV~iGsai~~  207 (221)
T PRK01130        181 RINTPEQAKKALE-LGAHAVVVGGAITR  207 (221)
T ss_pred             CCCCHHHHHHHHH-CCCCEEEEchHhcC
Confidence            7999999999996 89999999987654

>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II

Probab=95.38  E-value=0.011  Score=43.77  Aligned_cols=32  Identities=22%  Similarity=0.142  Sum_probs=27.2

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD   36 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~   36 (101)
                      ++++|   +|.+.+|+.++++ .||||||+|...+.
T Consensus       164 viaaG---GI~~~~~~~~al~-~GA~gV~iGt~f~~  195 (307)
T TIGR03151       164 VIAAG---GIADGRGMAAAFA-LGAEAVQMGTRFLC  195 (307)
T ss_pred             EEEEC---CCCCHHHHHHHHH-cCCCEeecchHHhc
Confidence            35777   8999999999997 89999999994443

This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.

>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2

Probab=95.02  E-value=0.0039  Score=46.77  Aligned_cols=35  Identities=14%  Similarity=-0.069  Sum_probs=31.3

Q ss_pred             CCCCCHHHHHHHHHhcCCCeeeeecccccC-CCccCC
Q psy4403           8 KEIVDYGGILKFKADTNASSVMIARAAQDN-CSIFSP   43 (101)
Q Consensus         8 GDI~s~~d~~~~~~~tg~dgvMigRgAl~n-P~iF~~   43 (101)
                      |.|.|.+|+.+++. .|++.|+++++++.+ |.++.+
T Consensus       295 GGI~~~~da~e~l~-aGA~~Vqv~ta~~~~Gp~~~~~  330 (335)
T TIGR01036       295 GGISSAQDALEKIR-AGASLLQIYSGFIYWGPPLVKE  330 (335)
T ss_pred             CCCCCHHHHHHHHH-cCCcHHHhhHHHHHhCchHHHH
Confidence            38999999999996 799999999999885 998765

The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.

>PLN02411 12-oxophytodienoate reductase

Probab=94.54  E-value=0.027  Score=43.15  Aligned_cols=39  Identities=15%  Similarity=-0.042  Sum_probs=33.4

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      +++|   .| +.++++++++.-.||-|.+||++|.||.+...+
T Consensus       317 i~~G---~i-~~~~a~~~l~~g~aDlV~~gR~~iadPdl~~k~  355 (391)
T PLN02411        317 MCSG---GF-TRELGMQAVQQGDADLVSYGRLFISNPDLVLRF  355 (391)
T ss_pred             EEEC---CC-CHHHHHHHHHcCCCCEEEECHHHHhCccHHHHH
Confidence            4566   68 679999999877799999999999999987765

>PRK05437 isopentenyl pyrophosphate isomerase; Provisional

Probab=94.38  E-value=0.028  Score=42.44  Aligned_cols=32  Identities=28%  Similarity=0.057  Sum_probs=28.0

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN   37 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n   37 (101)
                      +++|   .|.|..|+.+++.. |||+|++||+.|..
T Consensus       265 ia~G---GI~~~~dv~k~l~~-GAd~v~ig~~~l~~  296 (352)
T PRK05437        265 IASG---GIRNGLDIAKALAL-GADAVGMAGPFLKA  296 (352)
T ss_pred             EEEC---CCCCHHHHHHHHHc-CCCEEEEhHHHHHH
Confidence            4666   79999999999975 99999999998864

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial

Probab=94.30  E-value=0.035  Score=41.67  Aligned_cols=30  Identities=33%  Similarity=0.248  Sum_probs=25.7

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccc
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAA   34 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgA   34 (101)
                      ++|+|   .|++..|+.+++. .|||+||+||-.
T Consensus       201 VIadG---GIr~~~Di~KALa-~GAd~Vmig~~~  230 (321)
T TIGR01306       201 IIADG---GIRTHGDIAKSIR-FGASMVMIGSLF  230 (321)
T ss_pred             EEEEC---CcCcHHHHHHHHH-cCCCEEeechhh
Confidence            36777   7999999999997 599999999643

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.

>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]

Probab=94.22  E-value=0.029  Score=41.93  Aligned_cols=36  Identities=22%  Similarity=0.100  Sum_probs=32.8

Q ss_pred             CCCCCCHHHHHHHHHhcCCCeeeeecccccC-CCccCC
Q psy4403           7 SKEIVDYGGILKFKADTNASSVMIARAAQDN-CSIFSP   43 (101)
Q Consensus         7 sGDI~s~~d~~~~~~~tg~dgvMigRgAl~n-P~iF~~   43 (101)
                      .|.|.|.+|+.+++ .-||+.|.|+-|++-. |++|.+
T Consensus       247 vGGI~s~~DA~E~i-~aGA~~vQv~Tal~~~Gp~i~~~  283 (310)
T COG0167         247 VGGIETGEDALEFI-LAGASAVQVGTALIYKGPGIVKE  283 (310)
T ss_pred             ecCcCcHHHHHHHH-HcCCchheeeeeeeeeCchHHHH
Confidence            34799999999999 5899999999999999 999886

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism

Probab=94.09  E-value=0.043  Score=39.78  Aligned_cols=30  Identities=13%  Similarity=0.019  Sum_probs=26.6

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQ   35 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl   35 (101)
                      ++.|   .|.+++|+.+++| .|||||+++-|..
T Consensus       179 I~eg---GI~tpeda~~Ame-lGAdgVlV~SAIt  208 (248)
T cd04728         179 IVDA---GIGTPSDAAQAME-LGADAVLLNTAIA  208 (248)
T ss_pred             EEeC---CCCCHHHHHHHHH-cCCCEEEEChHhc
Confidence            4566   6999999999996 9999999998876

ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).

>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]

Probab=94.09  E-value=0.043  Score=41.78  Aligned_cols=40  Identities=18%  Similarity=0.079  Sum_probs=35.7

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      +++|   .|.+++.++++++.-.+|-|=+||..|.||.+-..+
T Consensus       292 i~~G---~i~~~~~Ae~~l~~g~aDlVa~gR~~ladP~~~~k~  331 (363)
T COG1902         292 IAVG---GINDPEQAEEILASGRADLVAMGRPFLADPDLVLKA  331 (363)
T ss_pred             EEeC---CCCCHHHHHHHHHcCCCCEEEechhhhcCccHHHHH
Confidence            4566   799999999999887899999999999999987664

>PRK00208 thiG thiazole synthase; Reviewed

Probab=94.05  E-value=0.043  Score=39.81  Aligned_cols=30  Identities=13%  Similarity=0.019  Sum_probs=26.4

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQ   35 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl   35 (101)
                      ++.|   .|.+++|+.+++| .|||||+++-|..
T Consensus       179 Ivea---GI~tpeda~~Ame-lGAdgVlV~SAIt  208 (250)
T PRK00208        179 IVDA---GIGTPSDAAQAME-LGADAVLLNTAIA  208 (250)
T ss_pred             EEeC---CCCCHHHHHHHHH-cCCCEEEEChHhh
Confidence            4566   6999999999997 8999999998875

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=94.01  E-value=0.06  Score=37.73  Aligned_cols=34  Identities=21%  Similarity=0.196  Sum_probs=30.5

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~   43 (101)
                      .|.|.+|++++++ .||++|++|..++.+|..+.+
T Consensus        82 GI~~~ed~~~~~~-~Ga~~vilg~~~l~~~~~l~e  115 (233)
T PRK00748         82 GIRSLETVEALLD-AGVSRVIIGTAAVKNPELVKE  115 (233)
T ss_pred             CcCCHHHHHHHHH-cCCCEEEECchHHhCHHHHHH
Confidence            7999999999887 699999999999999976654

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=93.96  E-value=0.047  Score=38.04  Aligned_cols=30  Identities=13%  Similarity=0.174  Sum_probs=26.8

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCS   39 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~   39 (101)
                      .|.+++|+.++++ .|+|||.+|++++..+.
T Consensus       180 GI~s~edi~~~~~-~Ga~gvivGsai~~~~~  209 (217)
T cd00331         180 GISTPEDVKRLAE-AGADAVLIGESLMRAPD  209 (217)
T ss_pred             CCCCHHHHHHHHH-cCCCEEEECHHHcCCCC
Confidence            6999999999985 69999999999987665

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain

Probab=93.92  E-value=0.041  Score=41.06  Aligned_cols=31  Identities=29%  Similarity=0.056  Sum_probs=27.0

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD   36 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~   36 (101)
                      +++|   .|++..|+.+++. .|||+|++||..|.
T Consensus       259 iasG---GIr~~~dv~kal~-lGAd~V~i~~~~L~  289 (326)
T cd02811         259 IASG---GIRNGLDIAKALA-LGADLVGMAGPFLK  289 (326)
T ss_pred             EEEC---CCCCHHHHHHHHH-hCCCEEEEcHHHHH
Confidence            5667   7999999999997 59999999998664

Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=93.56  E-value=0.041  Score=39.68  Aligned_cols=36  Identities=17%  Similarity=0.123  Sum_probs=31.9

Q ss_pred             CCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           8 KEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         8 GDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      |+|.|.+|+++++ ..|+++|.|+.+++.||.++.++
T Consensus        81 GGi~s~~d~~~l~-~~G~~~vvigs~~~~~~~~~~~~  116 (258)
T PRK01033         81 GGIKTLEQAKKIF-SLGVEKVSINTAALEDPDLITEA  116 (258)
T ss_pred             CCCCCHHHHHHHH-HCCCCEEEEChHHhcCHHHHHHH
Confidence            3799999999998 56999999999999999877663

>PRK07695 transcriptional regulator TenI; Provisional

Probab=93.21  E-value=0.081  Score=36.51  Aligned_cols=30  Identities=13%  Similarity=0.058  Sum_probs=26.3

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD   36 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~   36 (101)
                      ++.|   .| +++++.++++ +|+++|+++++...
T Consensus       153 ia~G---GI-~~~~~~~~~~-~Ga~gvav~s~i~~  182 (201)
T PRK07695        153 IAIG---GI-TPENTRDVLA-AGVSGIAVMSGIFS  182 (201)
T ss_pred             EEEc---CC-CHHHHHHHHH-cCCCEEEEEHHHhc
Confidence            5667   79 9999999985 99999999999874

>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway

Probab=93.16  E-value=0.017  Score=42.19  Aligned_cols=38  Identities=18%  Similarity=0.131  Sum_probs=31.1

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccc-ccCCCccCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAA-QDNCSIFSP   43 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgA-l~nP~iF~~   43 (101)
                      ++.|   .|.|.+|+.+++ .-|++.|+++-++ ...|.+|.+
T Consensus       248 ig~G---GI~s~~da~e~l-~aGA~~Vqv~Sal~~~Gp~~~~~  286 (295)
T PF01180_consen  248 IGVG---GIHSGEDAIEFL-MAGASAVQVCSALIYRGPGVIRR  286 (295)
T ss_dssp             EEES---S--SHHHHHHHH-HHTESEEEESHHHHHHGTTHHHH
T ss_pred             EEeC---CcCCHHHHHHHH-HhCCCHheechhhhhcCcHHHHH
Confidence            4555   799999999999 5899999999999 668988876

DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....

>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=93.00  E-value=0.084  Score=38.17  Aligned_cols=33  Identities=21%  Similarity=0.299  Sum_probs=27.1

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN   37 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n   37 (101)
                      ++.|   .|.|.+|++++.+..|+.||.+||++...
T Consensus       195 iaSG---Gv~s~~Di~~l~~~~G~~GvIvG~ALy~g  227 (241)
T COG0106         195 IASG---GVSSLDDIKALKELSGVEGVIVGRALYEG  227 (241)
T ss_pred             EEec---CcCCHHHHHHHHhcCCCcEEEEehHHhcC
Confidence            4555   79999999888865599999999998643

>PLN02495 oxidoreductase, acting on the CH-CH group of donors

Probab=92.88  E-value=0.12  Score=39.76  Aligned_cols=35  Identities=11%  Similarity=0.109  Sum_probs=32.0

Q ss_pred             CCCCCHHHHHHHHHhcCCCeeeeecccccC-CCccCC
Q psy4403           8 KEIVDYGGILKFKADTNASSVMIARAAQDN-CSIFSP   43 (101)
Q Consensus         8 GDI~s~~d~~~~~~~tg~dgvMigRgAl~n-P~iF~~   43 (101)
                      |.|.|.+|+.+++ .-||+.|+++-+++.+ |.++.+
T Consensus       277 GGI~s~~Da~e~i-~aGAs~VQv~Ta~~~~Gp~vi~~  312 (385)
T PLN02495        277 GGVETGGDAAEFI-LLGADTVQVCTGVMMHGYPLVKN  312 (385)
T ss_pred             CCCCCHHHHHHHH-HhCCCceeEeeeeeecCcHHHHH
Confidence            3799999999999 5899999999999999 988876

>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase

Probab=92.85  E-value=0.062  Score=38.61  Aligned_cols=34  Identities=15%  Similarity=-0.084  Sum_probs=31.2

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~   43 (101)
                      .|+|.+|++++++ .|++-|.||-.|+.||.++.+
T Consensus        82 GIrs~e~~~~~l~-~Ga~~vvigT~a~~~p~~~~~  115 (243)
T TIGR01919        82 GRRDDSSLRAALT-GGRARVNGGTAALENPWWAAA  115 (243)
T ss_pred             CCCCHHHHHHHHH-cCCCEEEECchhhCCHHHHHH
Confidence            6999999999997 799999999999999987755

This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.

>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=92.71  E-value=0.07  Score=38.56  Aligned_cols=36  Identities=17%  Similarity=0.167  Sum_probs=33.3

Q ss_pred             CCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           8 KEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         8 GDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      |.|+|.+++++.++ .|++-|.+|-.|+.||.++.++
T Consensus        82 GGIRs~~~v~~ll~-~G~~rViiGt~av~~p~~v~~~  117 (241)
T COG0106          82 GGIRSLEDVEALLD-AGVARVIIGTAAVKNPDLVKEL  117 (241)
T ss_pred             CCcCCHHHHHHHHH-CCCCEEEEecceecCHHHHHHH
Confidence            37999999999997 9999999999999999988774

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=92.71  E-value=0.12  Score=37.52  Aligned_cols=31  Identities=10%  Similarity=0.134  Sum_probs=27.3

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSI   40 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i   40 (101)
                      .|.|++|+.++++ .|+|+|.||++++..|.+
T Consensus       219 GI~t~ed~~~~~~-~Gad~vlVGsaI~~~~dp  249 (260)
T PRK00278        219 GIFTPEDLKRLAK-AGADAVLVGESLMRADDP  249 (260)
T ss_pred             CCCCHHHHHHHHH-cCCCEEEECHHHcCCCCH
Confidence            5999999999996 699999999999987653

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=92.62  E-value=0.08  Score=40.43  Aligned_cols=32  Identities=22%  Similarity=0.270  Sum_probs=27.5

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN   37 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n   37 (101)
                      +|-|   .|.+..|+.+.+. .|+|+||+|+..+.-
T Consensus       259 IAdG---GI~tg~di~kAlA-lGAdaV~iGt~~a~a  290 (369)
T TIGR01304       259 IADG---GIETSGDLVKAIA-CGADAVVLGSPLARA  290 (369)
T ss_pred             EEeC---CCCCHHHHHHHHH-cCCCEeeeHHHHHhh
Confidence            4666   7999999999996 799999999987653

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=92.58  E-value=0.12  Score=36.82  Aligned_cols=29  Identities=21%  Similarity=0.231  Sum_probs=25.3

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAA   34 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgA   34 (101)
                      +|.|   .|.|.+|+.++.+ .|++||++|++.
T Consensus       186 iasG---Gv~~~~Dl~~l~~-~g~~gvivg~al  214 (228)
T PRK04128        186 IYAG---GVSSAEDVKKLAE-IGFSGVIIGKAL  214 (228)
T ss_pred             EEEC---CCCCHHHHHHHHH-CCCCEEEEEhhh
Confidence            4556   7999999999987 799999999986

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=92.52  E-value=0.069  Score=38.12  Aligned_cols=35  Identities=26%  Similarity=0.140  Sum_probs=32.2

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      .|+|.||+++++. .||+.|-+|-.++.||.++.++
T Consensus        83 Girs~edv~~~l~-~Ga~kvviGs~~l~~p~l~~~i  117 (241)
T PRK14024         83 GIRDDESLEAALA-TGCARVNIGTAALENPEWCARV  117 (241)
T ss_pred             CCCCHHHHHHHHH-CCCCEEEECchHhCCHHHHHHH
Confidence            6999999999996 7999999999999999988764

>cd02812 PcrB_like PcrB_like proteins

Probab=92.44  E-value=0.071  Score=37.99  Aligned_cols=35  Identities=6%  Similarity=0.088  Sum_probs=30.9

Q ss_pred             CCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403           8 KEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         8 GDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~   43 (101)
                      |.|+|++++++++ ..|||+|.+|-.+..||..+.+
T Consensus       182 GGIrs~e~a~~l~-~aGAD~VVVGsai~~~p~~~~~  216 (219)
T cd02812         182 GGIRSGEQAKEMA-EAGADTIVVGNIVEEDPNAALE  216 (219)
T ss_pred             CCCCCHHHHHHHH-HcCCCEEEECchhhCCHHHHHH
Confidence            3799999999988 5799999999999999987654

One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.

>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]

Probab=92.41  E-value=0.11  Score=37.67  Aligned_cols=35  Identities=20%  Similarity=0.171  Sum_probs=32.0

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      .|.|.+|+.+++ ..|+|-|-|--+|+.||.+.+++
T Consensus        82 GI~s~eD~~~ll-~aGADKVSINsaAv~~p~lI~~~  116 (256)
T COG0107          82 GIRSVEDARKLL-RAGADKVSINSAAVKDPELITEA  116 (256)
T ss_pred             CcCCHHHHHHHH-HcCCCeeeeChhHhcChHHHHHH
Confidence            699999999999 48999999999999999987663

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=92.40  E-value=0.071  Score=38.04  Aligned_cols=35  Identities=9%  Similarity=0.151  Sum_probs=31.9

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      .|+|.+|++++++ .||+-|.||-.++.||.++.++
T Consensus        84 GIrs~e~v~~~l~-~Ga~kvvigt~a~~~~~~l~~~  118 (234)
T PRK13587         84 GIRTKSQIMDYFA-AGINYCIVGTKGIQDTDWLKEM  118 (234)
T ss_pred             CcCCHHHHHHHHH-CCCCEEEECchHhcCHHHHHHH
Confidence            6999999999995 7999999999999999887664

>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4

Probab=92.24  E-value=0.088  Score=38.29  Aligned_cols=30  Identities=13%  Similarity=0.117  Sum_probs=25.2

Q ss_pred             CCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403          10 IVDYGGILKFKADTNASSVMIARAAQDNCSI   40 (101)
Q Consensus        10 I~s~~d~~~~~~~tg~dgvMigRgAl~nP~i   40 (101)
                      |.|++|+.++. ..|+|||+||...|.+|..
T Consensus       218 I~~~~d~~~l~-~~G~davLVGe~lm~~~d~  247 (254)
T PF00218_consen  218 IKTPEDARRLA-RAGADAVLVGEALMRSPDP  247 (254)
T ss_dssp             -SSHHHHHHHC-TTT-SEEEESHHHHTSSSH
T ss_pred             CCCHHHHHHHH-HCCCCEEEECHHHhCCCCH
Confidence            99999998877 6899999999999998864

1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....

>TIGR00734 hisAF_rel hisA/hisF family protein

Probab=92.05  E-value=0.13  Score=36.43  Aligned_cols=30  Identities=23%  Similarity=0.265  Sum_probs=24.8

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQ   35 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl   35 (101)
                      ++.|   .|.|.+|+.++.+ .|+++|++|.++.
T Consensus       188 ia~G---Gi~s~ed~~~l~~-~Ga~~vivgsal~  217 (221)
T TIGR00734       188 MLGG---GISGVEDLELLKE-MGVSAVLVATAVH  217 (221)
T ss_pred             EEeC---CCCCHHHHHHHHH-CCCCEEEEhHHhh
Confidence            3455   7999999998654 7999999998764

This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.

>KOG1606|consensus

Probab=91.93  E-value=0.2  Score=36.02  Aligned_cols=28  Identities=4%  Similarity=0.030  Sum_probs=23.7

Q ss_pred             CCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403           8 KEIVDYGGILKFKADTNASSVMIARAAQD   36 (101)
Q Consensus         8 GDI~s~~d~~~~~~~tg~dgvMigRgAl~   36 (101)
                      |.|-++.|+.-++ +.|||||-+|-|...
T Consensus       216 GGvaTPADAALmM-QLGCdGVFVGSgiFk  243 (296)
T KOG1606|consen  216 GGVATPADAALMM-QLGCDGVFVGSGIFK  243 (296)
T ss_pred             cCcCChhHHHHHH-HcCCCeEEecccccc
Confidence            3799999997777 699999999988543

>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=91.65  E-value=0.1  Score=37.29  Aligned_cols=35  Identities=11%  Similarity=0.205  Sum_probs=31.8

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      .|+|.+|+++.++ .|++-|.||-.++.||.++.++
T Consensus        81 GIrs~e~~~~~l~-~Ga~kvvigt~a~~~p~~~~~~  115 (232)
T PRK13586         81 GIRDIEKAKRLLS-LDVNALVFSTIVFTNFNLFHDI  115 (232)
T ss_pred             CcCCHHHHHHHHH-CCCCEEEECchhhCCHHHHHHH
Confidence            6999999999996 7999999999999999987663

>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=91.52  E-value=0.11  Score=37.35  Aligned_cols=34  Identities=9%  Similarity=0.047  Sum_probs=30.6

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~   43 (101)
                      .|+|.+|+++.++ .|++-|.||-.|+.||.++.+
T Consensus        81 GIrs~e~~~~~l~-~Ga~rvvigT~a~~~p~~l~~  114 (241)
T PRK14114         81 GIRSLDYAEKLRK-LGYRRQIVSSKVLEDPSFLKF  114 (241)
T ss_pred             CCCCHHHHHHHHH-CCCCEEEECchhhCCHHHHHH
Confidence            6999999999996 799999999999999976644

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=91.52  E-value=0.18  Score=39.04  Aligned_cols=32  Identities=31%  Similarity=0.280  Sum_probs=28.3

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN   37 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n   37 (101)
                      +|-|   .|++.+|+.+++. .||++||+|+...+-
T Consensus       260 IAdG---GI~~~~Di~KALa-lGA~aVmvGs~~agt  291 (404)
T PRK06843        260 IADG---GIRFSGDVVKAIA-AGADSVMIGNLFAGT  291 (404)
T ss_pred             EEeC---CCCCHHHHHHHHH-cCCCEEEEcceeeee
Confidence            5667   7999999999996 999999999988773

>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein

Probab=91.52  E-value=0.19  Score=35.91  Aligned_cols=35  Identities=6%  Similarity=0.092  Sum_probs=30.2

Q ss_pred             CCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403           8 KEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         8 GDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~   43 (101)
                      |.|+|.+++++++ ..|+|+|.+|-.+..||..+.+
T Consensus       186 GGIrs~e~a~~l~-~aGAD~VVVGs~~~~dp~~~~~  220 (223)
T TIGR01768       186 GGIRSVEKAREMA-EAGADTIVTGNVIEEDVDKALE  220 (223)
T ss_pred             cCCCCHHHHHHHH-HcCCCEEEECcHHhhCHHHHHH
Confidence            3799999999988 4699999999999999876543

This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=91.48  E-value=0.1  Score=36.54  Aligned_cols=35  Identities=20%  Similarity=0.213  Sum_probs=31.5

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      .|.+.+|++++++ .||+.|+++-.++.||-.+.++
T Consensus        80 GI~~~ed~~~~~~-~Ga~~vvlgs~~l~d~~~~~~~  114 (230)
T TIGR00007        80 GIRSLEDVEKLLD-LGVDRVIIGTAAVENPDLVKEL  114 (230)
T ss_pred             CcCCHHHHHHHHH-cCCCEEEEChHHhhCHHHHHHH
Confidence            6999999999996 8999999999999999877664

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>PLN02460 indole-3-glycerol-phosphate synthase

Probab=91.40  E-value=0.24  Score=37.51  Aligned_cols=31  Identities=3%  Similarity=0.079  Sum_probs=27.7

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSI   40 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i   40 (101)
                      .|.|++|+.++.+ .|+|+|.||...|..|..
T Consensus       296 GI~t~~Dv~~l~~-~GadAvLVGEsLMr~~dp  326 (338)
T PLN02460        296 GLFTPDDVAYVQN-AGVKAVLVGESLVKQDDP  326 (338)
T ss_pred             CCCCHHHHHHHHH-CCCCEEEECHHHhCCCCH
Confidence            3999999988885 899999999999998764

>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]

Probab=91.23  E-value=0.23  Score=36.19  Aligned_cols=30  Identities=10%  Similarity=0.125  Sum_probs=27.6

Q ss_pred             CCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403          10 IVDYGGILKFKADTNASSVMIARAAQDNCSI   40 (101)
Q Consensus        10 I~s~~d~~~~~~~tg~dgvMigRgAl~nP~i   40 (101)
                      |.+++|+.++. ..|++|+.||.+.|.+|.+
T Consensus       216 I~~~~dv~~l~-~~ga~a~LVG~slM~~~~~  245 (254)
T COG0134         216 ISTPEDVRRLA-KAGADAFLVGEALMRADDP  245 (254)
T ss_pred             CCCHHHHHHHH-HcCCCEEEecHHHhcCCCH
Confidence            99999998877 5999999999999999876

>PLN02535 glycolate oxidase

Probab=91.16  E-value=0.24  Score=37.77  Aligned_cols=37  Identities=16%  Similarity=0.105  Sum_probs=30.6

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFS   42 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~   42 (101)
                      ++-|   .|.+..|+.+.+. .|+++|||||..+.-+..-.
T Consensus       282 i~dG---GIr~g~Dv~KALa-lGA~aV~vGr~~l~~l~~~g  318 (364)
T PLN02535        282 LLDG---GVRRGTDVFKALA-LGAQAVLVGRPVIYGLAAKG  318 (364)
T ss_pred             EeeC---CCCCHHHHHHHHH-cCCCEEEECHHHHhhhhhcc
Confidence            3455   7999999999995 79999999999888766533

>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=91.09  E-value=0.26  Score=35.20  Aligned_cols=27  Identities=7%  Similarity=0.081  Sum_probs=23.9

Q ss_pred             CCCCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403           8 KEIVDYGGILKFKADTNASSVMIARAAQ   35 (101)
Q Consensus         8 GDI~s~~d~~~~~~~tg~dgvMigRgAl   35 (101)
                      |.|.|.+|+.++. ..|++||.+|+++-
T Consensus       196 GGv~s~~Dl~~l~-~~G~~gvivg~Aly  222 (232)
T PRK13586        196 GGVSSDADLEYLK-NVGFDYIIVGMAFY  222 (232)
T ss_pred             CCCCCHHHHHHHH-HCCCCEEEEehhhh
Confidence            3799999999998 47999999999865

>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=90.98  E-value=0.26  Score=34.97  Aligned_cols=28  Identities=21%  Similarity=0.258  Sum_probs=24.8

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDN   37 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~n   37 (101)
                      .|.|.+|++++++ .|+++|.+|.++..+
T Consensus       197 Gi~s~edi~~l~~-~G~~~vivGsal~~g  224 (233)
T cd04723         197 GVRSVEDLELLKK-LGASGALVASALHDG  224 (233)
T ss_pred             CCCCHHHHHHHHH-cCCCEEEEehHHHcC
Confidence            7999999999987 699999999987544

The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl

>PLN02826 dihydroorotate dehydrogenase

Probab=90.69  E-value=0.082  Score=40.87  Aligned_cols=35  Identities=14%  Similarity=-0.017  Sum_probs=29.7

Q ss_pred             CCCCCHHHHHHHHHhcCCCeeeeecccccC-CCccCC
Q psy4403           8 KEIVDYGGILKFKADTNASSVMIARAAQDN-CSIFSP   43 (101)
Q Consensus         8 GDI~s~~d~~~~~~~tg~dgvMigRgAl~n-P~iF~~   43 (101)
                      |.|.|.+|+.+++. -|++.|+|+++.+-+ |+++.+
T Consensus       348 GGI~sg~Da~e~i~-AGAs~VQv~Ta~~~~Gp~~i~~  383 (409)
T PLN02826        348 GGVSSGEDAYKKIR-AGASLVQLYTAFAYEGPALIPR  383 (409)
T ss_pred             CCCCCHHHHHHHHH-hCCCeeeecHHHHhcCHHHHHH
Confidence            37999999999995 799999999998875 766554

>PRK13957 indole-3-glycerol-phosphate synthase; Provisional

Probab=89.99  E-value=0.38  Score=34.93  Aligned_cols=30  Identities=17%  Similarity=0.214  Sum_probs=26.7

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSI   40 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i   40 (101)
                      .|.|++|+.++.+ . +|||.||...|.+|..
T Consensus       210 GI~t~~d~~~l~~-~-~davLvG~~lm~~~d~  239 (247)
T PRK13957        210 GIESRSDLDKFRK-L-VDAALIGTYFMEKKDI  239 (247)
T ss_pred             CCCCHHHHHHHHH-h-CCEEEECHHHhCCCCH
Confidence            3999999999886 4 9999999999998864

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=89.63  E-value=0.27  Score=37.49  Aligned_cols=31  Identities=29%  Similarity=0.277  Sum_probs=27.3

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD   36 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~   36 (101)
                      +|.|   .|.+..|+.+.+. .|+|+||+|+...+
T Consensus       260 IAdG---GI~~~~diakAla-lGAd~Vm~Gs~fa~  290 (368)
T PRK08649        260 IADG---GIGTSGDIAKAIA-CGADAVMLGSPLAR  290 (368)
T ss_pred             EEeC---CCCCHHHHHHHHH-cCCCeecccchhcc
Confidence            4666   7999999999996 79999999998776

>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase

Probab=89.42  E-value=0.21  Score=35.83  Aligned_cols=31  Identities=13%  Similarity=0.047  Sum_probs=25.2

Q ss_pred             ccCCCCCCCCCHHHHHHHHH--hcCCCeeeeecccc
Q psy4403           2 DPSGGSKEIVDYGGILKFKA--DTNASSVMIARAAQ   35 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~--~tg~dgvMigRgAl   35 (101)
                      +|.|   .|.|.+|+.++.+  ..|++||++|++..
T Consensus       197 iasG---Gv~s~eDl~~l~~l~~~Gv~gvivg~Al~  229 (243)
T TIGR01919       197 AASG---GSSLLDDLRAIKYLDEGGVSVAIGGKLLY  229 (243)
T ss_pred             EEEC---CcCCHHHHHHHHhhccCCeeEEEEhHHHH
Confidence            4555   7999999999854  46999999999864

This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.

>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes

Probab=89.27  E-value=0.13  Score=36.41  Aligned_cols=35  Identities=14%  Similarity=0.173  Sum_probs=30.2

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      .|+|.+|+++.++ .||+-|.|+..++.||.++.++
T Consensus        81 GIrs~ed~~~ll~-~Ga~~Vvigt~~~~~~~~l~~~  115 (229)
T PF00977_consen   81 GIRSIEDAERLLD-AGADRVVIGTEALEDPELLEEL  115 (229)
T ss_dssp             SE-SHHHHHHHHH-TT-SEEEESHHHHHCCHHHHHH
T ss_pred             ccCcHHHHHHHHH-hCCCEEEeChHHhhchhHHHHH
Confidence            5999999999996 8999999999999999988764

Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....

>PRK06739 pyruvate kinase; Validated

Probab=89.25  E-value=0.93  Score=34.52  Aligned_cols=51  Identities=20%  Similarity=0.189  Sum_probs=32.7

Q ss_pred             CCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHhhhCC
Q psy4403          25 ASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYDNSAPNSKYCVQSMLGS   81 (101)
Q Consensus        25 ~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~~l~~~~~~   81 (101)
                      +||||||||=|+-=-=|.+    .|  .+=++.++.|.++..+.--.-++|-.|...
T Consensus       230 sDgimVARGDLgve~~~e~----vp--~~Qk~Ii~~c~~~gkPvIvATqmLeSM~~~  280 (352)
T PRK06739        230 ADGIMIARGDLGVELPYQF----IP--LLQKMMIQECNRTNTYVITATQMLQSMVDH  280 (352)
T ss_pred             cCEEEEECcccccccCHHH----HH--HHHHHHHHHHHHhCCCEEEEcchHHhhccC
Confidence            5999999998874322221    12  344566777888776655556677777654

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=89.11  E-value=0.33  Score=34.62  Aligned_cols=27  Identities=22%  Similarity=0.335  Sum_probs=24.4

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQD   36 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~   36 (101)
                      .|.|.+|+.++++ .|+++|.+|.++..
T Consensus       200 Gi~s~edi~~l~~-~G~~~vivG~a~~~  226 (234)
T PRK13587        200 GIRHQQDIQRLAS-LNVHAAIIGKAAHQ  226 (234)
T ss_pred             CCCCHHHHHHHHH-cCCCEEEEhHHHHh
Confidence            7999999999985 89999999998764

>PRK04302 triosephosphate isomerase; Provisional

Probab=88.68  E-value=0.56  Score=32.97  Aligned_cols=30  Identities=13%  Similarity=0.080  Sum_probs=26.1

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCS   39 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~   39 (101)
                      .|.+++++.++. +.|+|||.+|.+.+.-|.
T Consensus       181 gI~~~e~~~~~~-~~gadGvlVGsa~l~~~~  210 (223)
T PRK04302        181 GISTGEDVKAAL-ELGADGVLLASGVVKAKD  210 (223)
T ss_pred             CCCCHHHHHHHH-cCCCCEEEEehHHhCCcC
Confidence            799999999877 599999999999996543

>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain

Probab=88.65  E-value=0.89  Score=34.86  Aligned_cols=27  Identities=26%  Similarity=0.081  Sum_probs=25.1

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQD   36 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~   36 (101)
                      -|.|..|+.+++. -|||+|.+||.+|.
T Consensus       293 GI~~g~Dv~kala-LGAd~V~ig~~~l~  319 (392)
T cd02808         293 GLRTGADVAKALA-LGADAVGIGTAALI  319 (392)
T ss_pred             CCCCHHHHHHHHH-cCCCeeeechHHHH
Confidence            7999999999996 79999999999984

GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=88.49  E-value=0.46  Score=37.56  Aligned_cols=31  Identities=29%  Similarity=0.283  Sum_probs=27.0

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD   36 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~   36 (101)
                      ++.|   .|.++.|+.+.+. .|+++||+|+...+
T Consensus       348 IadG---Gi~~~~di~kAla-~GA~~Vm~G~~~a~  378 (495)
T PTZ00314        348 IADG---GIKNSGDICKALA-LGADCVMLGSLLAG  378 (495)
T ss_pred             EecC---CCCCHHHHHHHHH-cCCCEEEECchhcc
Confidence            4566   7999999999996 99999999998655

>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed

Probab=87.60  E-value=0.56  Score=33.70  Aligned_cols=30  Identities=10%  Similarity=0.158  Sum_probs=27.3

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCS   39 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~   39 (101)
                      .|+|.++++++++ .|||+|.+|-.+..||.
T Consensus       192 GIrs~e~a~~~l~-~GAD~VVVGSai~~d~~  221 (232)
T PRK04169        192 GIRSPEQARELMA-AGADTIVVGNIIEEDPK  221 (232)
T ss_pred             CCCCHHHHHHHHH-hCCCEEEEChHHhhCHH
Confidence            7999999999885 79999999999998886

>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain

Probab=87.53  E-value=0.45  Score=36.29  Aligned_cols=54  Identities=19%  Similarity=0.250  Sum_probs=34.1

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHHh
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDY   64 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~   64 (101)
                      .|++..|+.+.+ ..|++.|||||..|.-=....+ .+-...-+.+++-++.+...
T Consensus       297 GIr~g~Dv~KAL-aLGA~aV~iGr~~l~~la~~G~-~gv~~~l~~l~~el~~~m~l  350 (361)
T cd04736         297 GIRRGSDIVKAL-ALGANAVLLGRATLYGLAARGE-AGVSEVLRLLKEEIDRTLAL  350 (361)
T ss_pred             CCCCHHHHHHHH-HcCCCEEEECHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHHHH
Confidence            799999999999 4899999999977643332222 12111224455555544443

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain

Probab=87.47  E-value=0.45  Score=35.97  Aligned_cols=32  Identities=19%  Similarity=0.045  Sum_probs=28.6

Q ss_pred             CCCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403           8 KEIVDYGGILKFKADTNASSVMIARAAQDNCSI   40 (101)
Q Consensus         8 GDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i   40 (101)
                      |.|.+..|+.+++. -|+++|+|||..+..+..
T Consensus       278 GGIr~G~Dv~kala-LGA~aV~iG~~~l~~l~~  309 (344)
T cd02922         278 GGVRRGTDVLKALC-LGAKAVGLGRPFLYALSA  309 (344)
T ss_pred             CCCCCHHHHHHHHH-cCCCEEEECHHHHHHHhh
Confidence            37999999999995 699999999999987755

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.

>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes

Probab=87.26  E-value=0.33  Score=34.40  Aligned_cols=30  Identities=17%  Similarity=0.287  Sum_probs=23.6

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQ   35 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl   35 (101)
                      ++.|   .|.|.+|+.++. ..|++||++|++..
T Consensus       195 iasG---Gv~~~~Dl~~l~-~~G~~gvivg~al~  224 (229)
T PF00977_consen  195 IASG---GVRSLEDLRELK-KAGIDGVIVGSALH  224 (229)
T ss_dssp             EEES---S--SHHHHHHHH-HTTECEEEESHHHH
T ss_pred             EEec---CCCCHHHHHHHH-HCCCcEEEEehHhh
Confidence            3455   799999999988 79999999999763

Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....

>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=87.17  E-value=0.42  Score=34.35  Aligned_cols=31  Identities=16%  Similarity=0.141  Sum_probs=25.5

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhc----C-CCeeeeecccc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADT----N-ASSVMIARAAQ   35 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~t----g-~dgvMigRgAl   35 (101)
                      +|.|   .|.|.+|+.++.+..    | ++||.+|++..
T Consensus       192 iasG---Gv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al~  227 (241)
T PRK14114        192 FAAG---GISSENSLKTAQRVHRETNGLLKGVIVGRAFL  227 (241)
T ss_pred             EEEC---CCCCHHHHHHHHhcccccCCcEEEEEEehHHH
Confidence            4556   799999999998752    5 99999999863

>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional

Probab=87.00  E-value=0.72  Score=38.08  Aligned_cols=30  Identities=7%  Similarity=0.139  Sum_probs=27.8

Q ss_pred             CCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403          10 IVDYGGILKFKADTNASSVMIARAAQDNCSI   40 (101)
Q Consensus        10 I~s~~d~~~~~~~tg~dgvMigRgAl~nP~i   40 (101)
                      |.+++|+.++.+ .|+|+|+||...|..|.+
T Consensus       220 I~~~~d~~~l~~-~G~davLIGeslm~~~dp  249 (695)
T PRK13802        220 VFGAVEVEDYAR-AGADAVLVGEGVATADDH  249 (695)
T ss_pred             CCCHHHHHHHHH-CCCCEEEECHHhhCCCCH
Confidence            999999999885 899999999999999974

>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional

Probab=86.42  E-value=0.75  Score=36.13  Aligned_cols=29  Identities=10%  Similarity=0.100  Sum_probs=26.2

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCS   39 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~   39 (101)
                      .|.|++|+.++.+  |+|||.||...|.+|.
T Consensus       218 GI~t~~d~~~~~~--~~davLiG~~lm~~~d  246 (454)
T PRK09427        218 GIYTHAQVRELSP--FANGFLIGSSLMAEDD  246 (454)
T ss_pred             CCCCHHHHHHHHh--cCCEEEECHHHcCCCC
Confidence            3999999999864  6999999999999997

>PRK14725 pyruvate kinase; Provisional

Probab=86.19  E-value=1.4  Score=35.83  Aligned_cols=51  Identities=20%  Similarity=0.137  Sum_probs=32.6

Q ss_pred             CCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHhhhCC
Q psy4403          25 ASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYDNSAPNSKYCVQSMLGS   81 (101)
Q Consensus        25 ~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~~l~~~~~~   81 (101)
                      +||||||||=|+-=-=|.+    +  ..+=++.+..|..+..+.--.-++|-.|..+
T Consensus       501 ~DGIMIARGDLgvEi~~e~----l--p~iQk~Ii~~c~~~~kPVI~ATQmLESM~~~  551 (608)
T PRK14725        501 RFGVMIARGDLAVEVGFER----L--AEVQEEILWLCEAAHVPVIWATQVLESLAKK  551 (608)
T ss_pred             CcEEEEECCccccccCHHH----H--HHHHHHHHHHHHHcCCCEEEEcchHhhhccC
Confidence            6999999998864222221    1  1344667777887776655556777777644

>PRK14567 triosephosphate isomerase; Provisional

Probab=85.87  E-value=0.85  Score=33.21  Aligned_cols=32  Identities=9%  Similarity=0.110  Sum_probs=27.4

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCccC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFS   42 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~   42 (101)
                      .| +++++.++++.-.+||++||++.| +|.-|.
T Consensus       210 SV-~~~N~~~l~~~~diDG~LVGgasL-~~~~F~  241 (253)
T PRK14567        210 SL-KAENAKDILSLPDVDGGLIGGASL-KAAEFN  241 (253)
T ss_pred             cC-CHHHHHHHHcCCCCCEEEeehhhh-cHHHHH
Confidence            67 999999999999999999999998 554444

>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase

Probab=85.85  E-value=0.6  Score=35.56  Aligned_cols=29  Identities=31%  Similarity=0.346  Sum_probs=23.0

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAA   34 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgA   34 (101)
                      +|-|   .|.+..|+.+.+. .|+|.||+|+-.
T Consensus       215 IADG---Gi~~sGDi~KAla-~GAd~VMlG~ll  243 (352)
T PF00478_consen  215 IADG---GIRTSGDIVKALA-AGADAVMLGSLL  243 (352)
T ss_dssp             EEES---S-SSHHHHHHHHH-TT-SEEEESTTT
T ss_pred             eecC---CcCcccceeeeee-ecccceeechhh
Confidence            5667   7999999999994 899999999743

These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....

>PRK11197 lldD L-lactate dehydrogenase; Provisional

Probab=85.56  E-value=0.53  Score=36.17  Aligned_cols=31  Identities=19%  Similarity=0.167  Sum_probs=26.1

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD   36 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~   36 (101)
                      ++.|   .|++..|+.+.+. .|+++||+||..+.
T Consensus       304 i~dG---GIr~g~Di~KALa-LGA~~V~iGr~~l~  334 (381)
T PRK11197        304 LADS---GIRNGLDVVRMIA-LGADTVLLGRAFVY  334 (381)
T ss_pred             EeeC---CcCcHHHHHHHHH-cCcCceeEhHHHHH
Confidence            4555   7999999999995 79999999997654

>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain

Probab=85.44  E-value=0.63  Score=35.80  Aligned_cols=26  Identities=27%  Similarity=0.270  Sum_probs=24.0

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQ   35 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl   35 (101)
                      .|++..|+.+.+. .|+|+|+|||..+
T Consensus       316 GIr~G~Dv~KALa-LGA~~v~iGr~~l  341 (383)
T cd03332         316 GVRTGADIMKALA-LGAKAVLIGRPYA  341 (383)
T ss_pred             CcCcHHHHHHHHH-cCCCEEEEcHHHH
Confidence            7999999999995 7999999999877

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.

>PLN02461 Probable pyruvate kinase

Probab=85.36  E-value=0.7  Score=36.88  Aligned_cols=27  Identities=19%  Similarity=0.259  Sum_probs=17.2

Q ss_pred             CCHHHHHHHHHhc-CCCeeeeecccccC
Q psy4403          11 VDYGGILKFKADT-NASSVMIARAAQDN   37 (101)
Q Consensus        11 ~s~~d~~~~~~~t-g~dgvMigRgAl~n   37 (101)
                      -+++.++++-+-- -+||||||||=|+-
T Consensus       243 E~~~av~nl~eIi~~sDgIMVARGDLGv  270 (511)
T PLN02461        243 ENQEGLDNFDDILAESDAFMVARGDLGM  270 (511)
T ss_pred             CCHHHHHHHHHHHHhcCEEEEecccccc
Confidence            3444444444332 27999999998875

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=85.33  E-value=0.81  Score=35.98  Aligned_cols=31  Identities=32%  Similarity=0.284  Sum_probs=26.2

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD   36 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~   36 (101)
                      +|.|   .|+++.|+.+++. .|||.||+|...-+
T Consensus       335 iadG---Gi~~~~di~kAla-~GA~~v~~G~~~a~  365 (486)
T PRK05567        335 IADG---GIRYSGDIAKALA-AGASAVMLGSMLAG  365 (486)
T ss_pred             EEcC---CCCCHHHHHHHHH-hCCCEEEECccccc
Confidence            4566   7999999999996 79999999976544

>TIGR00734 hisAF_rel hisA/hisF family protein

Probab=84.98  E-value=0.53  Score=33.29  Aligned_cols=36  Identities=14%  Similarity=0.112  Sum_probs=31.4

Q ss_pred             CCCCHHHHHHHHHh-cCCCeeeeecccccCCCccCCC
Q psy4403           9 EIVDYGGILKFKAD-TNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         9 DI~s~~d~~~~~~~-tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      .|+|.+|+++++.. .+|+-|.||-.++.||.++.++
T Consensus        85 Girs~e~~~~~~~~l~~a~rvvigT~a~~~p~~l~~~  121 (221)
T TIGR00734        85 GVRSPEDLETLPFTLEFASRVVVATETLDITELLREC  121 (221)
T ss_pred             ccCCHHHHHHHHhhhccceEEeecChhhCCHHHHHHh
Confidence            69999999999764 3699999999999999977664

This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.

>PTZ00066 pyruvate kinase; Provisional

Probab=84.91  E-value=3.4  Score=33.08  Aligned_cols=64  Identities=14%  Similarity=0.168  Sum_probs=36.2

Q ss_pred             CHHHHHHHHHhc-CCCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHhhhCC
Q psy4403          12 DYGGILKFKADT-NASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYDNSAPNSKYCVQSMLGS   81 (101)
Q Consensus        12 s~~d~~~~~~~t-g~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~~l~~~~~~   81 (101)
                      +.+.++++-+-- -+||||||||=|+-=-=|.+    .|.  +=++.++.|.++..+.--.-++|-.|..+
T Consensus       260 ~~~av~NldeIl~~sDGIMVARGDLGvEip~e~----vp~--~QK~II~~c~~~gkPVIvATQmLeSMi~n  324 (513)
T PTZ00066        260 NIEGLINFDEILAESDGIMVARGDLGMEIPPEK----VFL--AQKMMISKCNVAGKPVITATQMLESMIKN  324 (513)
T ss_pred             CHHHHHHHHHHHHhcCEEEEEccccccccChHH----cch--HHHHHHHHHHHhCCCEEEechhHHHHhhC
Confidence            334443333332 26999999998874222221    232  23455566777766654456677777654

>PLN02762 pyruvate kinase complex alpha subunit

Probab=84.86  E-value=0.77  Score=36.60  Aligned_cols=28  Identities=14%  Similarity=0.217  Sum_probs=17.4

Q ss_pred             CCCHHHHHHHHHhc-CCCeeeeecccccC
Q psy4403          10 IVDYGGILKFKADT-NASSVMIARAAQDN   37 (101)
Q Consensus        10 I~s~~d~~~~~~~t-g~dgvMigRgAl~n   37 (101)
                      |-+++.+..+-+-- -+||||||||=|+-
T Consensus       253 IE~~~av~nl~eIi~~sDgiMVARGDLGv  281 (509)
T PLN02762        253 IESLDSLKNLEEIIRASDGAMVARGDLGA  281 (509)
T ss_pred             eCCHHHHHHHHHHHHhcCEEEEecCcccc
Confidence            33444444444332 37999999997764

>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

Probab=84.75  E-value=0.88  Score=33.34  Aligned_cols=46  Identities=15%  Similarity=0.213  Sum_probs=34.0

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhc-CCCeeeeecccccCCCccCCCCCCCCHHHHHHHH
Q psy4403           2 DPSGGSKEIVDYGGILKFKADT-NASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEY   57 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~t-g~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~   57 (101)
                      +|.|   .|.|.+|+.++.+.. |+.||.+|+++-    ||.   +..+..+.+..|
T Consensus       211 IASG---Gv~sleDi~~L~~~g~g~~gvIvGkAl~----~y~---g~~~l~ea~~~~  257 (262)
T PLN02446        211 TYAG---GVRSLDDLERVKVAGGGRVDVTVGSALD----IFG---GNLPYDDVVAWH  257 (262)
T ss_pred             EEEC---CCCCHHHHHHHHHcCCCCEEEEEEeeHH----HhC---CCccHHHHHHHH
Confidence            4566   799999999998764 789999999974    444   345666655544

>PLN02979 glycolate oxidase

Probab=84.37  E-value=0.75  Score=35.22  Aligned_cols=31  Identities=23%  Similarity=0.153  Sum_probs=26.1

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD   36 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~   36 (101)
                      ++.|   .|++..|+.+.+. .|+|+|+|||..|.
T Consensus       282 i~dG---GIr~G~Di~KALA-LGAdaV~iGrp~L~  312 (366)
T PLN02979        282 FLDG---GVRRGTDVFKALA-LGASGIFIGRPVVF  312 (366)
T ss_pred             EEeC---CcCcHHHHHHHHH-cCCCEEEEcHHHHH
Confidence            4455   7999999999995 79999999997664

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=84.07  E-value=0.98  Score=35.21  Aligned_cols=38  Identities=24%  Similarity=0.191  Sum_probs=31.4

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~   43 (101)
                      +|.|   .|++..|+.++++ -||+.||+|+...+-...-.+
T Consensus       331 iadG---Gi~~~~di~kAla-~GA~~V~~G~~~a~~~e~pg~  368 (450)
T TIGR01302       331 IADG---GIRYSGDIVKALA-AGADAVMLGSLLAGTTESPGE  368 (450)
T ss_pred             EEeC---CCCCHHHHHHHHH-cCCCEEEECchhhcCCcCCCc
Confidence            5667   6999999999996 699999999988776665544

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=83.85  E-value=0.88  Score=36.14  Aligned_cols=31  Identities=23%  Similarity=0.081  Sum_probs=26.3

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD   36 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~   36 (101)
                      ++-|   .|++..|+.+.+. .|+|+||+||-.-+
T Consensus       356 iadg---Gir~~gdi~KAla-~GA~~vm~G~~~ag  386 (502)
T PRK07107        356 CSDG---GIVYDYHMTLALA-MGADFIMLGRYFAR  386 (502)
T ss_pred             EEcC---CCCchhHHHHHHH-cCCCeeeeChhhhc
Confidence            4556   6999999999996 99999999997655

>PLN02765 pyruvate kinase

Probab=83.77  E-value=0.9  Score=36.39  Aligned_cols=13  Identities=15%  Similarity=0.345  Sum_probs=11.0

Q ss_pred             CCeeeeecccccC
Q psy4403          25 ASSVMIARAAQDN   37 (101)
Q Consensus        25 ~dgvMigRgAl~n   37 (101)
                      +||||||||=|+-
T Consensus       272 sDgIMVARGDLGv  284 (526)
T PLN02765        272 ADGIILSRGNLGI  284 (526)
T ss_pred             cCEEEEecCcccc
Confidence            6999999997764

>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

Probab=83.68  E-value=0.45  Score=34.86  Aligned_cols=34  Identities=9%  Similarity=0.135  Sum_probs=29.6

Q ss_pred             CCCCCHHHHHHHHHhcCCCeeeeecccccC----CCccCC
Q psy4403           8 KEIVDYGGILKFKADTNASSVMIARAAQDN----CSIFSP   43 (101)
Q Consensus         8 GDI~s~~d~~~~~~~tg~dgvMigRgAl~n----P~iF~~   43 (101)
                      |.|++ ++++++++ .||+-|.||-.|+.|    |.++.+
T Consensus        90 GGIR~-e~i~~~l~-~Ga~rViigT~Av~~~~~~p~~v~~  127 (262)
T PLN02446         90 GGVNS-ENAMSYLD-AGASHVIVTSYVFRDGQIDLERLKD  127 (262)
T ss_pred             CCccH-HHHHHHHH-cCCCEEEEchHHHhCCCCCHHHHHH
Confidence            36996 99999995 999999999999999    876654

>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]

Probab=83.37  E-value=0.51  Score=35.98  Aligned_cols=57  Identities=18%  Similarity=0.146  Sum_probs=36.3

Q ss_pred             CCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHHhcC
Q psy4403           8 KEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYDN   66 (101)
Q Consensus         8 GDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~~~   66 (101)
                      |.|++..|+.+++. .||+.|+|||..|.-=..=.+ .|-...-+.+++-++.+...-+
T Consensus       280 GGiR~G~Dv~KAlA-LGA~~v~igrp~L~~l~~~g~-~GV~~~le~~~~El~~~M~L~G  336 (360)
T COG1304         280 GGIRSGLDVAKALA-LGADAVGIGRPFLYGLAAGGE-AGVERVLEIIRKELKIAMALTG  336 (360)
T ss_pred             CCCCCHHHHHHHHH-hCCchhhhhHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHhcC
Confidence            37999999999995 899999999966543222111 1111122556666666655544

>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]

Probab=82.81  E-value=1.7  Score=31.83  Aligned_cols=46  Identities=15%  Similarity=0.246  Sum_probs=31.4

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHHhc
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYD   65 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~~   65 (101)
                      .|-|+.|+.-++ +.|||||-+|-|      ||.. .   .+.+..+...+-...|.
T Consensus       216 GvATPADAALMM-~LGadGVFVGSG------IFKS-~---~P~~~A~AIV~A~~~yd  261 (296)
T COG0214         216 GVATPADAALMM-QLGADGVFVGSG------IFKS-S---NPEKRAKAIVEATTHYD  261 (296)
T ss_pred             CcCChhHHHHHH-HhCCCeEEeccc------ccCC-C---CHHHHHHHHHHHHHccC
Confidence            799999997777 699999999988      4554 2   23344454444343343

>KOG2334|consensus

Probab=82.61  E-value=0.69  Score=36.22  Aligned_cols=72  Identities=21%  Similarity=0.260  Sum_probs=51.0

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHHhcCCCCcHHHHHHhhhCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYDNSAPNSKYCVQSMLGS   81 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~k~~l~~~~~~   81 (101)
                      .+||   ++....+.    ..+++.++|.+||++.|-+||.. .+..-|+++...++.-.--........+|.+..|...
T Consensus       389 ~~~~---~~ye~~~~----~d~lf~si~~~~~~~~~ssi~~~-n~k~aeq~aa~~~l~~s~l~e~~V~~~~~sl~~~~a~  460 (477)
T KOG2334|consen  389 KANG---PVYETVQR----TDKLFSSIATARGQKYNSSIWSP-NKKSAEQDAAIVALRKSNLWEADVGSENYSLKEMIAH  460 (477)
T ss_pred             cCCC---cchhhhhh----hhhhhHHHhhhhhhhhhccccCc-chhhHHHHHHHHHHHhcCcchhhhcccchhHHHHHhh
Confidence            3566   77766664    46788899999999999999997 5545566777777775544444455567777777643

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=82.59  E-value=1.1  Score=35.41  Aligned_cols=33  Identities=21%  Similarity=0.095  Sum_probs=28.1

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNC   38 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP   38 (101)
                      +|-|   .|.++.|+.+++. .||++||+|.-..+-.
T Consensus       334 ia~g---gi~~~~~~~~al~-~ga~~v~~g~~~ag~~  366 (479)
T PRK07807        334 WADG---GVRHPRDVALALA-AGASNVMIGSWFAGTY  366 (479)
T ss_pred             EecC---CCCCHHHHHHHHH-cCCCeeeccHhhccCc
Confidence            5667   7999999999997 7999999998776544

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=82.08  E-value=1.3  Score=35.19  Aligned_cols=31  Identities=29%  Similarity=0.309  Sum_probs=26.8

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD   36 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~   36 (101)
                      +|-|   .|.+.+|+.+.+. .||++||+|....+
T Consensus       355 IadG---GI~~~~di~kAla-~GA~~V~vGs~~~~  385 (505)
T PLN02274        355 IADG---GISNSGHIVKALT-LGASTVMMGSFLAG  385 (505)
T ss_pred             EEeC---CCCCHHHHHHHHH-cCCCEEEEchhhcc
Confidence            4556   7999999999996 79999999987665

>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase

Probab=81.79  E-value=1.1  Score=34.25  Aligned_cols=31  Identities=23%  Similarity=0.153  Sum_probs=26.3

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD   36 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~   36 (101)
                      ++.|   .|++..|+.+.+. .|+++|+|||..|.
T Consensus       283 i~dG---GIr~G~Dv~KALA-LGA~aV~iGr~~l~  313 (367)
T PLN02493        283 FLDG---GVRRGTDVFKALA-LGASGIFIGRPVVF  313 (367)
T ss_pred             EEeC---CcCcHHHHHHHHH-cCCCEEEEcHHHHH
Confidence            4455   7999999999996 69999999997664

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=81.78  E-value=1.3  Score=34.90  Aligned_cols=30  Identities=20%  Similarity=0.093  Sum_probs=25.6

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQ   35 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl   35 (101)
                      +|-|   .|.++.|+.+.+. .|++.||+|.-.-
T Consensus       332 iadG---gi~~~~di~kala-~GA~~vm~g~~~a  361 (475)
T TIGR01303       332 WADG---GVRHPRDVALALA-AGASNVMVGSWFA  361 (475)
T ss_pred             EEeC---CCCCHHHHHHHHH-cCCCEEeechhhc
Confidence            5666   7999999999996 9999999997543

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type

Probab=80.25  E-value=0.74  Score=33.53  Aligned_cols=29  Identities=17%  Similarity=0.124  Sum_probs=26.2

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCS   39 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~   39 (101)
                      .|++ ++++++++ .||+.|.||-.|+.||.
T Consensus        84 GIr~-e~v~~~l~-aGa~rVvIGS~av~~~~  112 (253)
T TIGR02129        84 GIND-TNAQEWLD-EGASHVIVTSWLFTKGK  112 (253)
T ss_pred             CcCH-HHHHHHHH-cCCCEEEECcHHHhCCC
Confidence            6997 99999996 99999999999999943

This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	101
1vhn_A	318	Putative flavin oxidoreducatase; structural genomi	99.69
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	99.64
3kru_A	343	NADH:flavin oxidoreductase/NADH oxidase; homotetra	98.45
4ef8_A	354	Dihydroorotate dehydrogenase; phenyl isothiocyanat	98.43
1icp_A	376	OPR1, 12-oxophytodienoate reductase 1; beta-alpha-	98.41
2hsa_B	402	12-oxophytodienoate reductase 3; alpha beta 8 barr	98.4
3oix_A	345	Putative dihydroorotate dehydrogenase; dihydrooro	98.39
3o07_A	291	Pyridoxine biosynthesis protein SNZ1; (beta/alpha)	98.39
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	98.37
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	98.36
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	98.36
2r14_A	377	Morphinone reductase; H-tunnelling, flavoprotein,	98.36
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	98.36
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	98.35
1vyr_A	364	Pentaerythritol tetranitrate reductase; oxidoreduc	98.35
1f76_A	336	Dihydroorotate dehydrogenase; monomer, alpha-beta-	98.34
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	98.34
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	98.33
2gou_A	365	Oxidoreductase, FMN-binding; OLD yeallow enzyme, f	98.32
4ab4_A	362	Xenobiotic reductase B; oxidoreductase, OLD yellow	98.31
2agk_A	260	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	98.3
3gka_A	361	N-ethylmaleimide reductase; decode biostructures,	98.27
3aty_A	379	Tcoye, prostaglandin F2A synthase; alpha/beta barr	98.23
3zwt_A	367	Dihydroorotate dehydrogenase (quinone), mitochond;	98.21
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	98.2
3l5a_A	419	NADH/flavin oxidoreductase/NADH oxidase; OLD yello	98.14
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	98.14
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	98.13
3l5l_A	363	Xenobiotic reductase A; TIM barrel, oxidoreductase	98.1
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	98.1
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	98.1
3i65_A	415	Dihydroorotate dehydrogenase homolog, mitochondria	98.1
3tjl_A	407	NADPH dehydrogenase; OLD yellow enzyme, flavin mon	98.03
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	98.01
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	98.0
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	97.99
1tv5_A	443	Dhodehase, dihydroorotate dehydrogenase homolog, m	97.91
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	97.86
3tjx_A	354	Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh	97.79
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	97.7
2yzr_A	330	Pyridoxal biosynthesis lyase PDXS; redox protein,	97.67
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	97.55
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	97.47
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	97.39
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	97.35
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	97.31
1vcf_A	332	Isopentenyl-diphosphate delta-isomerase; TIM barre	97.29
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	97.26
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	97.16
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	97.14
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	97.1
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	97.02
2nv1_A	305	Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b	96.93
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	96.91
3cwo_X	237	Beta/alpha-barrel protein based on 1THF and 1TMY;	96.9
1p4c_A	380	L(+)-mandelate dehydrogenase; TIM barrel, hydroxy	96.9
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	96.86
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	96.83
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	96.82
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	96.8
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	96.57
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	96.57
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	96.49
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	96.44
3bw2_A	369	2-nitropropane dioxygenase; TIM barrel, oxidoreduc	96.36
4a3u_A	358	NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET	96.35
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	96.17
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	96.17
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	96.17
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	96.12
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	96.11
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	95.96
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	95.89
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	95.89
2gjl_A	328	Hypothetical protein PA1024; 2-nitropropane dioxyg	95.87
3vkj_A	368	Isopentenyl-diphosphate delta-isomerase; type 2 is	95.82
2zbt_A	297	Pyridoxal biosynthesis lyase PDXS; pyridoxine bios	95.77
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	95.77
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	95.76
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	95.6
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	95.58
3bo9_A	326	Putative nitroalkan dioxygenase; TM0800, structura	95.51
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	95.5
3vzx_A	228	Heptaprenylglyceryl phosphate synthase; biosynthes	94.99
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	94.93
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	94.75
1viz_A	240	PCRB protein homolog; structural genomics, unknown	94.68
3vk5_A	286	MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S	94.67
4adt_A	297	Pyridoxine biosynthetic enzyme PDX1 homologue, PU;	94.52
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	94.36
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	94.25
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	93.97
2f6u_A	234	GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy	93.82
3w01_A	235	Heptaprenylglyceryl phosphate synthase; biosynthes	93.71
4gbu_A	400	NADPH dehydrogenase 1; alpha/beta barrel, enenone	93.64
1wv2_A	265	Thiazole moeity, thiazole biosynthesis protein THI	93.0
4a29_A	258	Engineered retro-aldol enzyme RA95.0; de novo prot	92.73
1yad_A	221	Regulatory protein TENI; TIM barrel, transcription	92.69
4gj1_A	243	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	92.49
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	92.35
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	91.1
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	91.02
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	91.01
1xi3_A	215	Thiamine phosphate pyrophosphorylase; structural g	90.32
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	90.03
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	89.91
1xm3_A	264	Thiazole biosynthesis protein THIG; structural gen	89.43
1i4n_A	251	Indole-3-glycerol phosphate synthase; thermostable	86.6
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	86.27
2htm_A	268	Thiazole biosynthesis protein THIG; thiamin biosyn	85.68
1w8s_A	263	FBP aldolase, fructose-bisphosphate aldolase class	84.98
2h6r_A	219	Triosephosphate isomerase; beta-alpha barrel; 2.30	84.17
1pii_A	452	N-(5'phosphoribosyl)anthranilate isomerase; bifunc	82.35
2tps_A	227	Protein (thiamin phosphate synthase); thiamin bios	82.34
2pgw_A	384	Muconate cycloisomerase; enolase superfamily, octa	81.18
1hg3_A	225	Triosephosphate isomerase; thermostability, tetram	80.09

>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1

Probab=99.69  E-value=9.6e-18  Score=122.38  Aligned_cols=97  Identities=12%  Similarity=0.169  Sum_probs=81.6

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCC-----CC---CCHH---HHHHHHHHHHHHhcCC--
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTK-----GI---QDIH---QMIKEYLRYCVDYDNS--   67 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~-----~~---~~~~---~~~~~~l~~~~~~~~~--   67 (101)
                      +++||   +|+|++|+.++++.+|||+|||||+++.|||+|.++.     +.   .++.   +++.+|++.+.++.+.  
T Consensus       186 Vi~~G---gI~s~~da~~~l~~~gad~V~iGR~~l~~P~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  262 (318)
T 1vhn_A          186 TFVSG---DIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLRSGKYSEPSREEILRTFERHLELLIKTKGERK  262 (318)
T ss_dssp             EEEES---SCCSHHHHHHHHHHHCCSEEEESGGGTTCTTHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred             EEEEC---CcCCHHHHHHHHHcCCCCEEEECHHHHhCcchHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHhcCchH
Confidence            46788   9999999999999999999999999999999998761     32   2333   6788999988887653  


Q ss_pred             -CCcHHHHHHhhhCCCCC-hHHHHHHHhcCChhhh
Q psy4403          68 -APNSKYCVQSMLGSQQE-SPLGKKFLESQTLEQI  100 (101)
Q Consensus        68 -~~~~k~~l~~~~~~~~~-~~~~~~i~~~~~~~e~  100 (101)
                       ...+|.++.+|++++++ +++|+.|.+++|++|+
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  297 (318)
T 1vhn_A          263 AVVEMRKFLAGYTKDLKGARRFREKVMKIEEVQIL  297 (318)
T ss_dssp             HHHHHHTTHHHHTTTCTTHHHHHHHHTTCCCHHHH
T ss_pred             HHHHHHHHHHHHHhcCCChHHHHHHHHcCCCHHHH
Confidence             23467888999999999 9999999999999886

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=99.64  E-value=1.1e-16  Score=118.37  Aligned_cols=95  Identities=13%  Similarity=0.130  Sum_probs=75.5

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC----CC---CCCHHHHHHHHHHH---HHHhcCCCCc
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT----KG---IQDIHQMIKEYLRY---CVDYDNSAPN   70 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~----~~---~~~~~~~~~~~l~~---~~~~~~~~~~   70 (101)
                      +++||   +|.|++|+.++++  |||+|||||+++.|||+|.++    .+   ..++.+++..++++   ..++......
T Consensus       200 VianG---gI~s~eda~~~l~--GaD~V~iGRa~l~~P~l~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  274 (350)
T 3b0p_A          200 FVTNG---GIRSLEEALFHLK--RVDGVMLGRAVYEDPFVLEEADRRVFGLPRRPSRLEVARRMRAYLEEEVLKGTPPWA  274 (350)
T ss_dssp             EEEES---SCCSHHHHHHHHT--TSSEEEECHHHHHCGGGGTTHHHHTTCCSCCCCHHHHHHHHHHHHHHHHHHTCCHHH
T ss_pred             EEEEC---CcCCHHHHHHHHh--CCCEEEECHHHHhCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence            46788   9999999999997  899999999999999999986    12   23466655544444   4444433344


Q ss_pred             HHHHHHhhhCCCCC-hHHHHHHHhcCChhhh
Q psy4403          71 SKYCVQSMLGSQQE-SPLGKKFLESQTLEQI  100 (101)
Q Consensus        71 ~k~~l~~~~~~~~~-~~~~~~i~~~~~~~e~  100 (101)
                      .++|+.+|++++++ +++|+.|.++++++++
T Consensus       275 ~~kh~~~~~~g~~~~~~~r~~l~~~~~~~~~  305 (350)
T 3b0p_A          275 VLRHMLNLFRGRPKGRLWRRLLSEGRSLQAL  305 (350)
T ss_dssp             HHTTSTTTTTTSTTHHHHHHHHHHHCSHHHH
T ss_pred             HHHHHHHHHccCCCHHHHHHHHHCCCCHHHH
Confidence            67888999999999 9999999999999876

>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*

Probab=98.45  E-value=3.2e-08  Score=73.05  Aligned_cols=42  Identities=17%  Similarity=0.025  Sum_probs=38.2

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTK   45 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~   45 (101)
                      +++||   +|.|+++++++++..+||.||+||+++.||+++.++.
T Consensus       280 Vi~~G---gi~t~e~Ae~~l~~G~aD~V~iGR~~lanPdl~~k~~  321 (343)
T 3kru_A          280 TSAVG---LITTQELAEEILSNERADLVALGRELLRNPYWVLHTY  321 (343)
T ss_dssp             EEEES---SCCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHTC
T ss_pred             cceee---eeeHHHHHHHHHhchhhHHHHHHHHHhcCCeEEEEEe
Confidence            35677   8999999999999888999999999999999998855

>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*

Probab=98.43  E-value=4.2e-08  Score=72.76  Aligned_cols=39  Identities=23%  Similarity=0.195  Sum_probs=35.6

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC-CCccCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN-CSIFSP   43 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n-P~iF~~   43 (101)
                      +++||   +|+|.+|+.++++ +|||+|||||+++.| ||+|.+
T Consensus       280 II~~G---GI~s~~da~~~l~-aGAd~V~vgra~l~~GP~~~~~  319 (354)
T 4ef8_A          280 IFGCG---GVYTGEDAFLHVL-AGASMVQVGTALQEEGPSIFER  319 (354)
T ss_dssp             EEEES---CCCSHHHHHHHHH-HTEEEEEECHHHHHHCTTHHHH
T ss_pred             EEEEC---CcCCHHHHHHHHH-cCCCEEEEhHHHHHhCHHHHHH
Confidence            35777   8999999999996 899999999999999 999886

>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*

Probab=98.41  E-value=6.5e-08  Score=72.08  Aligned_cols=39  Identities=15%  Similarity=-0.031  Sum_probs=36.1

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      ++||   +| ++++++++++.++||.||+||++++|||++.++
T Consensus       305 i~~G---~i-~~~~a~~~l~~g~aD~V~~gR~~l~~P~l~~k~  343 (376)
T 1icp_A          305 IVAG---GY-DREDGNRALIEDRADLVAYGRLFISNPDLPKRF  343 (376)
T ss_dssp             EEES---SC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHH
T ss_pred             EEeC---CC-CHHHHHHHHHCCCCcEEeecHHHHhCccHHHHH
Confidence            5677   89 999999999999999999999999999999875

>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*

Probab=98.40  E-value=6.7e-08  Score=72.63  Aligned_cols=40  Identities=18%  Similarity=-0.010  Sum_probs=36.6

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      +++||   +| |+++++++++.++||.||+||+++.|||++.++
T Consensus       322 vi~~G---~i-~~~~a~~~l~~g~aD~V~igR~~l~dP~l~~k~  361 (402)
T 2hsa_B          322 FICSG---GY-TRELGIEAVAQGDADLVSYGRLFISNPDLVMRI  361 (402)
T ss_dssp             EEEES---SC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHH
T ss_pred             EEEeC---CC-CHHHHHHHHHCCCCceeeecHHHHhCchHHHHH
Confidence            35677   89 999999999999999999999999999999875

>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}

Probab=98.39  E-value=8.7e-08  Score=70.85  Aligned_cols=39  Identities=23%  Similarity=0.227  Sum_probs=35.4

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecc-cccCCCccCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARA-AQDNCSIFSP   43 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRg-Al~nP~iF~~   43 (101)
                      +++||   +|.|.+|+.++++ +|||+|||||+ ++.+||+|.+
T Consensus       278 IIg~G---GI~s~~da~~~l~-aGAd~V~igra~~~~gP~~~~~  317 (345)
T 3oix_A          278 IIGTG---GVXTGRDAFEHIL-CGASMVQIGTALHQEGPQIFKR  317 (345)
T ss_dssp             EEEES---SCCSHHHHHHHHH-HTCSEEEESHHHHHHCTHHHHH
T ss_pred             EEEEC---CCCChHHHHHHHH-hCCCEEEEChHHHhcChHHHHH
Confidence            35777   8999999999996 89999999999 8999999876

>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A

Probab=98.39  E-value=2.1e-07  Score=67.21  Aligned_cols=50  Identities=6%  Similarity=0.114  Sum_probs=38.0

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHHhc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYD   65 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~~   65 (101)
                      ||||   +|.|++|+.+++ ++||||||+|||++..|.          +....+.+.+....|.
T Consensus       204 IAnG---GI~TpedA~~~l-e~GaDGVmVGrAI~~s~D----------P~~~Akafv~Av~~~~  253 (291)
T 3o07_A          204 FAAG---GVATPADAALLM-QLGCDGVFVGSGIFKSSN----------PVRLATAVVEATTHFD  253 (291)
T ss_dssp             EBCS---SCCSHHHHHHHH-HTTCSCEEECGGGGGSSC----------HHHHHHHHHHHHHTTT
T ss_pred             ecCC---CCCCHHHHHHHH-HhCCCEEEEchHHhCCCC----------HHHHHHHHHHHHHhcc
Confidence            5788   999999999999 789999999999987543          2344555555554443

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=98.37  E-value=1.1e-07  Score=75.08  Aligned_cols=41  Identities=7%  Similarity=-0.021  Sum_probs=38.0

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      +++||   +|.++++++++++.++||.||+||++++|||++.++
T Consensus       297 vi~~G---~i~~~~~a~~~l~~g~~d~v~~gR~~~~~P~~~~~~  337 (690)
T 3k30_A          297 VVGVG---RFTSPDAMVRQIKAGILDLIGAARPSIADPFLPNKI  337 (690)
T ss_dssp             EEECS---CCCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHH
T ss_pred             EEEeC---CCCCHHHHHHHHHCCCcceEEEcHHhHhCccHHHHH
Confidence            35777   999999999999999999999999999999999876

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=98.36  E-value=5.4e-08  Score=67.56  Aligned_cols=40  Identities=10%  Similarity=0.126  Sum_probs=36.3

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhc--CCCeeeeecccccCCCccCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADT--NASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~t--g~dgvMigRgAl~nP~iF~~   43 (101)
                      +++||   +|.+++|+.++++.|  |||+||+||+++.+||.|.+
T Consensus       196 via~G---GI~~~~d~~~~~~~~~~Gad~v~vG~al~~~~~~~~~  237 (244)
T 2y88_A          196 VIASG---GVSSLDDLRAIATLTHRGVEGAIVGKALYARRFTLPQ  237 (244)
T ss_dssp             EEEES---CCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCHHH
T ss_pred             EEEEC---CCCCHHHHHHHHhhccCCCCEEEEcHHHHCCCcCHHH
Confidence            35778   899999999999888  99999999999999998865

>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*

Probab=98.36  E-value=1e-07  Score=71.12  Aligned_cols=40  Identities=20%  Similarity=0.120  Sum_probs=36.3

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      +++||   +| ++++++++++.++||.||+||++++|||++.++
T Consensus       302 vi~~G---gi-~~~~a~~~l~~g~aD~V~igR~~l~~P~l~~k~  341 (377)
T 2r14_A          302 LIYCG---NY-DAGRAQARLDDNTADAVAFGRPFIANPDLPERF  341 (377)
T ss_dssp             EEEES---SC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHH
T ss_pred             EEEEC---CC-CHHHHHHHHHCCCceEEeecHHHHhCchHHHHH
Confidence            35777   89 799999999999999999999999999999775

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=98.36  E-value=1.1e-07  Score=69.94  Aligned_cols=41  Identities=15%  Similarity=-0.008  Sum_probs=37.0

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      +++||   +|.|+++++++++..+||.||+||+++.||+++.++
T Consensus       280 Vi~~G---gI~s~e~a~~~L~~G~aD~V~iGR~~lanPdl~~ki  320 (340)
T 3gr7_A          280 TGAVG---LITSGWQAEEILQNGRADLVFLGRELLRNPYWPYAA  320 (340)
T ss_dssp             EEEES---SCCCHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHH
T ss_pred             EEeeC---CCCCHHHHHHHHHCCCeeEEEecHHHHhCchHHHHH
Confidence            35677   899999999999988899999999999999998764

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=98.35  E-value=1.2e-07  Score=68.23  Aligned_cols=39  Identities=18%  Similarity=0.173  Sum_probs=34.8

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc-CCCccCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD-NCSIFSP   43 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~-nP~iF~~   43 (101)
                      +++||   +|.|++|+.++++ +|||+||+||+++. +||+|.+
T Consensus       245 vi~~G---GI~~~~da~~~l~-~GAd~V~vg~~~l~~~p~~~~~  284 (311)
T 1jub_A          245 IIGTG---GIETGQDAFEHLL-CGATMLQIGTALHKEGPAIFDR  284 (311)
T ss_dssp             EEEES---SCCSHHHHHHHHH-HTCSEEEECHHHHHHCTHHHHH
T ss_pred             EEEEC---CCCCHHHHHHHHH-cCCCEEEEchHHHhcCcHHHHH
Confidence            35677   8999999999994 79999999999996 9999876

>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...

Probab=98.35  E-value=1.1e-07  Score=70.59  Aligned_cols=40  Identities=10%  Similarity=0.017  Sum_probs=36.5

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      +++||   +| |+++++++++..+||.||+||+++.|||++.++
T Consensus       297 vi~~G---gi-t~~~a~~~l~~g~aD~V~~gR~~l~~P~~~~~~  336 (364)
T 1vyr_A          297 IIGAG---AY-TAEKAEDLIGKGLIDAVAFGRDYIANPDLVARL  336 (364)
T ss_dssp             EEEES---SC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHH
T ss_pred             EEEEC---Cc-CHHHHHHHHHCCCccEEEECHHHHhChhHHHHH
Confidence            35777   89 999999999999999999999999999999875

>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1

Probab=98.34  E-value=4.1e-08  Score=71.57  Aligned_cols=39  Identities=18%  Similarity=-0.049  Sum_probs=35.2

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc-CCCccCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD-NCSIFSP   43 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~-nP~iF~~   43 (101)
                      ++++|   +|.|.+|+.++++ .|||+||+||+++. |||+|.+
T Consensus       292 Vi~~G---GI~~~~da~~~l~-~GAd~V~igr~~l~~~P~~~~~  331 (336)
T 1f76_A          292 IIGVG---GIDSVIAAREKIA-AGASLVQIYSGFIFKGPPLIKE  331 (336)
T ss_dssp             EEEES---SCCSHHHHHHHHH-HTCSEEEESHHHHHHCHHHHHH
T ss_pred             EEEEC---CCCCHHHHHHHHH-CCCCEEEeeHHHHhcCcHHHHH
Confidence            35677   8999999999997 79999999999998 9999875

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=98.34  E-value=1.5e-07  Score=69.02  Aligned_cols=40  Identities=15%  Similarity=0.089  Sum_probs=36.7

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      ++||   +|.|+++++++++..+||.||+||+++.||+++.++
T Consensus       281 i~~G---gi~s~~~a~~~l~~G~aD~V~iGR~~i~nPdl~~ki  320 (338)
T 1z41_A          281 GAVG---MITDGSMAEEILQNGRADLIFIGRELLRDPFFARTA  320 (338)
T ss_dssp             EECS---SCCSHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHH
T ss_pred             EEEC---CCCCHHHHHHHHHcCCceEEeecHHHHhCchHHHHH
Confidence            5677   899999999999988899999999999999999764

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=98.33  E-value=1.5e-07  Score=67.84  Aligned_cols=39  Identities=21%  Similarity=0.156  Sum_probs=34.8

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc-CCCccCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD-NCSIFSP   43 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~-nP~iF~~   43 (101)
                      +++||   +|.|++|+.+++ ..|||+||+||+++. +||+|.+
T Consensus       247 vi~~G---GI~~~~da~~~l-~~GAd~V~ig~~~l~~~p~~~~~  286 (314)
T 2e6f_A          247 VFGCG---GVYSGEDAFLHI-LAGASMVQVGTALQEEGPGIFTR  286 (314)
T ss_dssp             EEEES---SCCSHHHHHHHH-HHTCSSEEECHHHHHHCTTHHHH
T ss_pred             EEEEC---CCCCHHHHHHHH-HcCCCEEEEchhhHhcCcHHHHH
Confidence            35677   899999999999 479999999999996 9999876

>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*

Probab=98.32  E-value=1.2e-07  Score=70.29  Aligned_cols=40  Identities=13%  Similarity=-0.027  Sum_probs=36.5

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      +++||   +| |+++++++++..+||.||+||+++.|||++.++
T Consensus       296 vi~~G---gi-~~~~a~~~l~~g~aD~V~igR~~i~~P~l~~~~  335 (365)
T 2gou_A          296 LIYAG---RY-NAEKAEQAINDGLADMIGFGRPFIANPDLPERL  335 (365)
T ss_dssp             EEEES---SC-CHHHHHHHHHTTSCSEEECCHHHHHCTTHHHHH
T ss_pred             EEEeC---CC-CHHHHHHHHHCCCcceehhcHHHHhCchHHHHH
Confidence            35777   89 999999999998899999999999999999775

>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}

Probab=98.31  E-value=1.6e-07  Score=69.86  Aligned_cols=40  Identities=13%  Similarity=-0.045  Sum_probs=36.5

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      +++||   ++ |+++++++++..+||.||+||+++.||+++.++
T Consensus       282 vi~~G---gi-t~e~a~~~l~~g~aD~V~iGR~~lanPdl~~k~  321 (362)
T 4ab4_A          282 YIVNE---RF-DKASANAALASGKADAVAFGVPFIANPDLPARL  321 (362)
T ss_dssp             EEEES---SC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHH
T ss_pred             EEEeC---CC-CHHHHHHHHHcCCccEEEECHHhHhCcHHHHHH
Confidence            35777   89 999999999999999999999999999999775

>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}

Probab=98.30  E-value=1.2e-07  Score=67.46  Aligned_cols=40  Identities=5%  Similarity=-0.009  Sum_probs=35.9

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhc-CCCeeeeeccc--ccCC-CccCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADT-NASSVMIARAA--QDNC-SIFSP   43 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~t-g~dgvMigRgA--l~nP-~iF~~   43 (101)
                      ++|||   +|.|++|+.++++.| ||++||+||++  ..+| |.|.+
T Consensus       208 VIasG---Gi~s~ed~~~l~~~~~G~~gvivg~al~l~~g~~~~~~~  251 (260)
T 2agk_A          208 IVYAG---GAKSVDDLKLVDELSHGKVDLTFGSSLDIFGGNLVKFED  251 (260)
T ss_dssp             EEEES---CCCCTHHHHHHHHHHTTCEEEECCTTBGGGTCSSBCHHH
T ss_pred             EEEeC---CCCCHHHHHHHHHhcCCCCEEEeeCCHHHcCCCCCCHHH
Confidence            36777   899999999999999 99999999998  8888 88875

>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0

Probab=98.27  E-value=2.1e-07  Score=69.11  Aligned_cols=40  Identities=8%  Similarity=-0.084  Sum_probs=36.4

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      +++||   ++ |+++++++++..+||.||+||+++.||+++.++
T Consensus       290 vi~~G---gi-t~e~a~~~l~~G~aD~V~iGR~~ladPdl~~k~  329 (361)
T 3gka_A          290 FIVNE---NF-TLDSAQAALDAGQADAVAWGKLFIANPDLPRRF  329 (361)
T ss_dssp             EEEES---SC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHH
T ss_pred             EEEeC---CC-CHHHHHHHHHcCCccEEEECHHhHhCcHHHHHH
Confidence            35677   79 999999999998999999999999999999875

>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A*

Probab=98.23  E-value=2.9e-07  Score=68.71  Aligned_cols=40  Identities=8%  Similarity=-0.016  Sum_probs=36.3

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      +++||   +| |+++++++++..+||.||+||+++.||+++.++
T Consensus       310 vi~~G---~i-t~~~a~~~l~~g~aD~V~igR~~l~~P~l~~k~  349 (379)
T 3aty_A          310 KISNL---RY-DFEEADQQIREGKVDAVAFGAKFIANPDLVERA  349 (379)
T ss_dssp             EEEES---SC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHH
T ss_pred             EEEEC---CC-CHHHHHHHHHcCCCeEEEecHHHHhCcHHHHHH
Confidence            35677   89 999999999998899999999999999999765

>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...

Probab=98.21  E-value=4.2e-07  Score=67.65  Aligned_cols=39  Identities=15%  Similarity=0.011  Sum_probs=34.7

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccc-cCCCccCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQ-DNCSIFSP   43 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl-~nP~iF~~   43 (101)
                      +++||   +|.|.+|+.++++ +|||+|||||+++ .+||+|.+
T Consensus       301 vI~~G---GI~s~~da~~~l~-~GAd~V~vgra~l~~gP~~~~~  340 (367)
T 3zwt_A          301 IIGVG---GVSSGQDALEKIR-AGASLVQLYTALTFWGPPVVGK  340 (367)
T ss_dssp             EEEES---SCCSHHHHHHHHH-HTCSEEEESHHHHHHCTHHHHH
T ss_pred             EEEEC---CCCCHHHHHHHHH-cCCCEEEECHHHHhcCcHHHHH
Confidence            35777   8999999999997 8999999999996 67999876

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=98.20  E-value=4.3e-07  Score=72.17  Aligned_cols=41  Identities=12%  Similarity=0.053  Sum_probs=37.7

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      +++||   +|.|+++++++++..+||.||+||++|.||+++.++
T Consensus       294 vi~~G---~i~~~~~a~~~l~~g~aD~V~~gR~~l~~P~~~~~~  334 (729)
T 1o94_A          294 VLGVG---RYTDPEKMIEIVTKGYADIIGCARPSIADPFLPQKV  334 (729)
T ss_dssp             EECCS---CCCCHHHHHHHHHTTSCSBEEESHHHHHCTTHHHHH
T ss_pred             EEEeC---CCCCHHHHHHHHHCCCCCEEEeCchhhcCchHHHHH
Confidence            35677   899999999999999999999999999999999775

>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}

Probab=98.14  E-value=5.9e-07  Score=67.87  Aligned_cols=39  Identities=15%  Similarity=0.038  Sum_probs=35.5

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      +++||   +|.|+++++++++.  ||.||+||+++.||+++.++
T Consensus       321 VI~~G---gI~t~e~Ae~~L~~--aDlVaiGR~~IanPdlv~ki  359 (419)
T 3l5a_A          321 LIASG---GINSPESALDALQH--ADMVGMSSPFVTEPDFVHKL  359 (419)
T ss_dssp             EEECS---SCCSHHHHHHHGGG--CSEEEESTHHHHCTTHHHHH
T ss_pred             EEEEC---CCCCHHHHHHHHHh--CCcHHHHHHHHHCcHHHHHH
Confidence            35677   89999999999998  99999999999999999765

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*

Probab=98.14  E-value=8.2e-07  Score=65.39  Aligned_cols=40  Identities=13%  Similarity=0.019  Sum_probs=36.2

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      ++||   .|.|+++++++++...||.||+||+++.||+++.++
T Consensus       292 i~~G---gi~t~e~a~~~l~~G~aD~V~iGR~~lanPdl~~k~  331 (349)
T 3hgj_A          292 GAVG---LITTPEQAETLLQAGSADLVLLGRVLLRDPYFPLRA  331 (349)
T ss_dssp             EECS---SCCCHHHHHHHHHTTSCSEEEESTHHHHCTTHHHHH
T ss_pred             EEEC---CCCCHHHHHHHHHCCCceEEEecHHHHhCchHHHHH
Confidence            5677   899999999999988899999999999999998763

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=98.13  E-value=1.2e-06  Score=62.69  Aligned_cols=39  Identities=15%  Similarity=0.184  Sum_probs=34.9

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~   43 (101)
                      ++++|   .|.|++|+.++++ .|||+||+||+++.+|+++.+
T Consensus       244 via~G---GI~~~~d~~~~l~-~GAd~V~vg~~~l~~p~~~~~  282 (311)
T 1ep3_A          244 IIGMG---GVANAQDVLEMYM-AGASAVAVGTANFADPFVCPK  282 (311)
T ss_dssp             EEECS---SCCSHHHHHHHHH-HTCSEEEECTHHHHCTTHHHH
T ss_pred             EEEEC---CcCCHHHHHHHHH-cCCCEEEECHHHHcCcHHHHH
Confidence            35677   8999999999997 799999999999999998765

>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*

Probab=98.10  E-value=8.6e-07  Score=65.62  Aligned_cols=40  Identities=8%  Similarity=-0.204  Sum_probs=36.5

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      ++||   .|.|+++++++++...||.||+||+++.||+++.++
T Consensus       299 i~~G---gI~s~e~a~~~l~~G~aD~V~iGR~~lanPdl~~k~  338 (363)
T 3l5l_A          299 TSAW---GFGTPQLAEAALQANQLDLVSVGRAHLADPHWAYFA  338 (363)
T ss_dssp             EECS---STTSHHHHHHHHHTTSCSEEECCHHHHHCTTHHHHH
T ss_pred             EEeC---CCCCHHHHHHHHHCCCccEEEecHHHHhCchHHHHH
Confidence            5677   899999999999988899999999999999998764

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=98.10  E-value=8.3e-07  Score=69.02  Aligned_cols=40  Identities=10%  Similarity=-0.169  Sum_probs=37.2

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~   43 (101)
                      ++|||   +|.|++|+.++++.+||+|||+||++..+||.|.+
T Consensus       499 VIasG---Gi~s~~d~~~~~~~~G~~gvivg~a~~~~~~~~~e  538 (555)
T 1jvn_A          499 VIASS---GAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVND  538 (555)
T ss_dssp             EEECS---CCCSHHHHHHHHHHSCCSEEEESHHHHTTSCCHHH
T ss_pred             EEEEC---CCCCHHHHHHHHHhcCChHHHHHHHHHcCCCCHHH
Confidence            46788   89999999999998999999999999999999886

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=98.10  E-value=4.5e-07  Score=63.03  Aligned_cols=40  Identities=8%  Similarity=0.135  Sum_probs=36.1

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhc--CCCeeeeecccccCCCccCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADT--NASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~t--g~dgvMigRgAl~nP~iF~~   43 (101)
                      ++++|   +|.+++|+.++++.|  ||||||+||+++.+||.|.+
T Consensus       193 via~G---GI~~~~d~~~~~~~~~~Gadgv~vG~al~~~~~~~~~  234 (244)
T 1vzw_A          193 VVASG---GVSSLDDLRAIAGLVPAGVEGAIVGKALYAKAFTLEE  234 (244)
T ss_dssp             EEEES---CCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCHHH
T ss_pred             EEEEC---CCCCHHHHHHHHhhccCCCceeeeeHHHHcCCCCHHH
Confidence            35777   899999999999888  99999999999999998765

>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*

Probab=98.10  E-value=6.2e-07  Score=67.80  Aligned_cols=39  Identities=18%  Similarity=-0.020  Sum_probs=35.2

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC-CCccCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN-CSIFSP   43 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n-P~iF~~   43 (101)
                      ++++|   +|.|.+|+.++++ +|||+|||||+++.+ ||+|.+
T Consensus       348 IIg~G---GI~s~eDa~e~l~-aGAd~VqIgra~l~~GP~~~~~  387 (415)
T 3i65_A          348 IIASG---GIFSGLDALEKIE-AGASVCQLYSCLVFNGMKSAVQ  387 (415)
T ss_dssp             EEECS---SCCSHHHHHHHHH-HTEEEEEESHHHHHHGGGHHHH
T ss_pred             EEEEC---CCCCHHHHHHHHH-cCCCEEEEcHHHHhcCHHHHHH
Confidence            35677   8999999999997 899999999999988 999876

>3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A*

Probab=98.03  E-value=2.5e-07  Score=69.81  Aligned_cols=41  Identities=12%  Similarity=0.004  Sum_probs=36.8

Q ss_pred             CccCCCCCCCCCHHHHHHHHHh---cCCCeeeeecccccCCCccCCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKAD---TNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~---tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      +++||   +|.+.+|+.++++.   ++||.||+||+++.||+++.++
T Consensus       316 vI~~G---gi~~~~dA~~~i~~~~~g~aDlVa~GR~~iaNPdL~~ri  359 (407)
T 3tjl_A          316 ILKAG---NYSYDAPEFKTLKEDIADKRTLVGFSRYFTSNPNLVWKL  359 (407)
T ss_dssp             EEEES---CGGGGTTTTHHHHHHHTTSSEEEECSHHHHHCTTHHHHH
T ss_pred             EEecC---CCCCHHHHHHHHHhhccCCCeEEEeChhhhhCchHHHHH
Confidence            36788   89999999888888   8899999999999999999875

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=98.01  E-value=1.4e-06  Score=60.59  Aligned_cols=39  Identities=13%  Similarity=-0.023  Sum_probs=34.8

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~   43 (101)
                      ++++|   +|.+++|+.++++ +||||||+|++++.+||.|.+
T Consensus       199 via~G---GI~~~~d~~~~~~-~Gadgv~vgsal~~~~~~~~~  237 (252)
T 1ka9_F          199 VIASG---GAGRMEHFLEAFQ-AGAEAALAASVFHFGEIPIPK  237 (252)
T ss_dssp             EEEES---CCCSHHHHHHHHH-TTCSEEEESHHHHTTSSCHHH
T ss_pred             EEEeC---CCCCHHHHHHHHH-CCCHHHHHHHHHHcCCCCHHH
Confidence            35777   8999999999985 999999999999999988765

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=98.00  E-value=2e-06  Score=67.52  Aligned_cols=40  Identities=18%  Similarity=0.120  Sum_probs=36.8

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      ++||   +|.|+++++++++..+||.||+||+++.||+++.++
T Consensus       284 i~~G---gi~~~~~a~~~l~~g~aD~V~~gR~~l~~P~l~~k~  323 (671)
T 1ps9_A          284 VTTN---RINDPQVADDILSRGDADMVSMARPFLADAELLSKA  323 (671)
T ss_dssp             EECS---SCCSHHHHHHHHHTTSCSEEEESTHHHHCTTHHHHH
T ss_pred             EEeC---CCCCHHHHHHHHHcCCCCEEEeCHHHHhCcHHHHHH
Confidence            5677   899999999999988899999999999999999765

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=97.99  E-value=2.5e-06  Score=59.85  Aligned_cols=39  Identities=13%  Similarity=-0.057  Sum_probs=27.6

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      +++|   +|.+++|+.++++ +||||||+|++++.+||.|.++
T Consensus       204 ia~G---GI~~~ed~~~~~~-~Gadgv~vgsal~~~~~~~~~~  242 (266)
T 2w6r_A          204 IASG---GAGKMEHFLEAFL-AGADAALAASVFHFREIDMREL  242 (266)
T ss_dssp             EEES---CCCSHHHHHHHHH-HTCSEEEESTTTC---------
T ss_pred             EEeC---CCCCHHHHHHHHH-cCCHHHHccHHHHcCCCCHHHH
Confidence            5677   8999999999985 9999999999999999998874

>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1

Probab=97.91  E-value=9.6e-07  Score=67.22  Aligned_cols=39  Identities=15%  Similarity=-0.049  Sum_probs=34.8

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc-CCCccCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD-NCSIFSP   43 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~-nP~iF~~   43 (101)
                      ++++|   +|.|.+|+.++++ .|||+|||||+++. +||+|.+
T Consensus       376 VIg~G---GI~s~~DA~e~l~-aGAd~Vqigrall~~gP~l~~~  415 (443)
T 1tv5_A          376 IIASG---GIFSGLDALEKIE-AGASVCQLYSCLVFNGMKSAVQ  415 (443)
T ss_dssp             EEEES---SCCSHHHHHHHHH-TTEEEEEESHHHHHHGGGHHHH
T ss_pred             EEEEC---CCCCHHHHHHHHH-cCCCEEEEcHHHHhcChHHHHH
Confidence            35677   8999999999996 79999999999886 9999876

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=97.86  E-value=3.7e-06  Score=58.50  Aligned_cols=38  Identities=13%  Similarity=-0.060  Sum_probs=33.6

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~   43 (101)
                      +++|   +|.+++|+.++++ +||||||+|++++.+||.+.+
T Consensus       199 ia~G---GI~~~~d~~~~~~-~Gadgv~vGsal~~~~~~~~~  236 (253)
T 1thf_D          199 IASG---GAGKMEHFLEAFL-AGADAALAASVFHFREIDVRE  236 (253)
T ss_dssp             EEES---CCCSHHHHHHHHH-TTCSEEEESHHHHTTCSCHHH
T ss_pred             EEEC---CCCCHHHHHHHHH-cCChHHHHHHHHHcCCCCHHH
Confidence            5677   8999999999995 999999999999999987654

>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A*

Probab=97.79  E-value=2.1e-06  Score=63.09  Aligned_cols=38  Identities=24%  Similarity=0.174  Sum_probs=33.7

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccc-cCCCccCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQ-DNCSIFSP   43 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl-~nP~iF~~   43 (101)
                      +++|   +|.|.+|+.+++. .|||.|||++|++ .+||+|.+
T Consensus       281 Ig~G---GI~s~~Da~e~i~-aGAs~Vqv~Ta~~y~GP~~~~~  319 (354)
T 3tjx_A          281 FGCG---GVYTGEDAFLHVL-AGASMVQVGTALQEEGPSIFER  319 (354)
T ss_dssp             EEES---SCCSHHHHHHHHH-HTEEEEEECHHHHHHCTTHHHH
T ss_pred             EEeC---CcCCHHHHHHHHH-cCCCEEEEChhhhhcCchHHHH
Confidence            5677   8999999999995 8999999999976 78999876

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A

Probab=97.70  E-value=9.9e-06  Score=56.18  Aligned_cols=38  Identities=13%  Similarity=0.130  Sum_probs=33.2

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhc----C-CCeeeeecccccCCCcc
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADT----N-ASSVMIARAAQDNCSIF   41 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~t----g-~dgvMigRgAl~nP~iF   41 (101)
                      ++|+|   +|.+++|+.++++.|    | |||||+|++++..|.-+
T Consensus       191 via~G---GI~~~~d~~~~~~~~~~~~G~adgv~vgsal~~~~~~~  233 (241)
T 1qo2_A          191 VLAAG---GISSENSLKTAQKVHTETNGLLKGVIVGRAFLEGILTV  233 (241)
T ss_dssp             EEEES---SCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTTSSCH
T ss_pred             EEEEC---CCCCHHHHHHHHhcccccCCeEeEEEeeHHHHcCCCCH
Confidence            35777   899999999999988    9 99999999999877643

>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}

Probab=97.67  E-value=1.6e-05  Score=58.51  Aligned_cols=32  Identities=6%  Similarity=0.050  Sum_probs=29.0

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN   37 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n   37 (101)
                      +|||   +|.|++|+.++++. |||||||||+++..
T Consensus       246 VAeG---GI~Tpeda~~~l~~-GaDgV~VGsaI~~a  277 (330)
T 2yzr_A          246 FAAG---GVATPADAALMMQL-GSDGVFVGSGIFKS  277 (330)
T ss_dssp             EECS---CCCSHHHHHHHHHT-TCSCEEESHHHHTS
T ss_pred             EEEC---CCCCHHHHHHHHHc-CcCEEeeHHHHhcC
Confidence            5888   89999999999985 99999999999853

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=97.55  E-value=1.4e-05  Score=59.40  Aligned_cols=58  Identities=17%  Similarity=0.170  Sum_probs=41.4

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC-CCCC---CHHHHHHHHHHHHHHhcCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT-KGIQ---DIHQMIKEYLRYCVDYDNS   67 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~-~~~~---~~~~~~~~~l~~~~~~~~~   67 (101)
                      ++++|   +|++.+|+.+++. .|||+|||||     ||+|... .|..   ...+.+.++++.+..+.+.
T Consensus       287 Via~G---GI~~g~D~~kala-lGAd~V~iGr-----~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~  348 (368)
T 2nli_A          287 IVFDS---GVRRGEHVAKALA-SGADVVALGR-----PVLFGLALGGWQGAYSVLDYFQKDLTRVMQLTGS  348 (368)
T ss_dssp             EEECS---SCCSHHHHHHHHH-TTCSEEEECH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEEC---CCCCHHHHHHHHH-cCCCEEEECH-----HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCC
Confidence            35677   8999999999998 9999999999     6676631 1111   1225667777776666554

>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A

Probab=97.47  E-value=2.5e-05  Score=54.41  Aligned_cols=38  Identities=26%  Similarity=0.183  Sum_probs=33.6

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~   43 (101)
                      ++||   .|.|++|++++++ .|||+|+|||.++.||+++.+
T Consensus        83 i~~G---gi~~~~~~~~~l~-~Gad~V~ig~~~l~dp~~~~~  120 (247)
T 3tdn_A           83 IASG---GAGKMEHFLEAFL-RGADKVSINTAAVENPSLITQ  120 (247)
T ss_dssp             EEES---CCCSHHHHHHHHH-TTCSEECCSHHHHHCTHHHHH
T ss_pred             EEeC---CCCCHHHHHHHHH-cCCCeeehhhHHhhChHHHHH
Confidence            4567   8999999999995 799999999999999997755

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=97.39  E-value=6.3e-05  Score=61.91  Aligned_cols=35  Identities=23%  Similarity=0.211  Sum_probs=31.3

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCS   39 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~   39 (101)
                      +++||   +|.|.+|+.++++ .|||+|||||+++.+||
T Consensus       790 vi~~G---GI~s~~da~~~l~-~Ga~~v~vg~~~l~~~~  824 (1025)
T 1gte_A          790 ILATG---GIDSAESGLQFLH-SGASVLQVCSAVQNQDF  824 (1025)
T ss_dssp             EEEES---SCCSHHHHHHHHH-TTCSEEEESHHHHTSCT
T ss_pred             EEEec---CcCCHHHHHHHHH-cCCCEEEEeeccccCCc
Confidence            35777   8999999999997 89999999999998665

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=97.35  E-value=4.5e-05  Score=53.21  Aligned_cols=37  Identities=11%  Similarity=-0.030  Sum_probs=30.5

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFS   42 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~   42 (101)
                      ++++|   .|.|++|+.++++ .||||||+| .++.+||.+.
T Consensus       184 vIA~G---GI~t~~d~~~~~~-~GadgV~VG-sai~~p~~~~  220 (229)
T 3q58_A          184 VIAEG---RYNTPALAANAIE-HGAWAVTVG-SAITRIEHIC  220 (229)
T ss_dssp             EEEES---SCCSHHHHHHHHH-TTCSEEEEC-HHHHCHHHHH
T ss_pred             EEEEC---CCCCHHHHHHHHH-cCCCEEEEc-hHhcChHHHH
Confidence            35777   7999999999997 599999999 6666787653

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*

Probab=97.31  E-value=2.9e-05  Score=58.16  Aligned_cols=58  Identities=19%  Similarity=0.296  Sum_probs=39.8

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC-CCCCC---HHHHHHHHHHHHHHhcCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT-KGIQD---IHQMIKEYLRYCVDYDNS   67 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~-~~~~~---~~~~~~~~l~~~~~~~~~   67 (101)
                      ++++|   +|++.+|+.+++. .|||+|||||     ||+|... .+...   ..+.+.++++.+..+.+.
T Consensus       310 Via~G---GI~~g~Dv~kala-lGAd~V~iGr-----~~l~~~~~~g~~gv~~~l~~l~~el~~~m~~~G~  371 (392)
T 2nzl_A          310 VFLDG---GVRKGTDVLKALA-LGAKAVFVGR-----PIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGC  371 (392)
T ss_dssp             EEECS---SCCSHHHHHHHHH-TTCSEEEECH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEEC---CCCCHHHHHHHHH-hCCCeeEECH-----HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCC
Confidence            35677   8999999999998 8999999999     5555421 11111   225566777766665543

>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*

Probab=97.29  E-value=7.9e-05  Score=54.23  Aligned_cols=56  Identities=20%  Similarity=0.064  Sum_probs=38.8

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCH---HHHHHHHHHHHHHhcC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDI---HQMIKEYLRYCVDYDN   66 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~---~~~~~~~l~~~~~~~~   66 (101)
                      +++|   +|.|.+|+.+++. .|||+|||||+.+..+  .   .|....   .+.+.++++....+.+
T Consensus       260 ia~G---GI~~~~d~~kal~-~GAd~V~igr~~l~~~--~---~G~~gv~~~~~~l~~el~~~m~~~G  318 (332)
T 1vcf_A          260 VASG---GVYTGTDGAKALA-LGADLLAVARPLLRPA--L---EGAERVAAWIGDYLEELRTALFAIG  318 (332)
T ss_dssp             EEES---SCCSHHHHHHHHH-HTCSEEEECGGGHHHH--T---TCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEC---CCCCHHHHHHHHH-hCCChHhhhHHHHHHH--h---ccHHHHHHHHHHHHHHHHHHHHHhC
Confidence            5677   8999999999997 6999999999777655  1   232111   2445566665555543

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A

Probab=97.26  E-value=9.5e-05  Score=51.16  Aligned_cols=38  Identities=11%  Similarity=0.126  Sum_probs=33.4

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~   43 (101)
                      +.+|   .|.+.+++.++++ +|||+|++|++++.||+++.+
T Consensus        77 i~~G---gi~~~~~~~~~~~-~Gad~V~lg~~~l~~p~~~~~  114 (241)
T 1qo2_A           77 QIGG---GIRSLDYAEKLRK-LGYRRQIVSSKVLEDPSFLKS  114 (241)
T ss_dssp             EEES---SCCSHHHHHHHHH-TTCCEEEECHHHHHCTTHHHH
T ss_pred             EEEC---CCCCHHHHHHHHH-CCCCEEEECchHhhChHHHHH
Confidence            3566   8999999999886 799999999999999997654

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=97.16  E-value=0.00013  Score=50.93  Aligned_cols=36  Identities=11%  Similarity=-0.047  Sum_probs=29.2

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCcc
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIF   41 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF   41 (101)
                      ++++|   .|.|++|+.++++ .||||||+| .++.+|+..
T Consensus       184 vIA~G---GI~t~~d~~~~~~-~GadgV~VG-sal~~p~~~  219 (232)
T 3igs_A          184 VIAEG---RYNSPALAAEAIR-YGAWAVTVG-SAITRLEHI  219 (232)
T ss_dssp             EEEES---CCCSHHHHHHHHH-TTCSEEEEC-HHHHCHHHH
T ss_pred             EEEEC---CCCCHHHHHHHHH-cCCCEEEEe-hHhcCHHHH
Confidence            35677   7999999999997 599999999 555567653

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*

Probab=97.14  E-value=4.6e-05  Score=58.81  Aligned_cols=58  Identities=12%  Similarity=0.156  Sum_probs=40.6

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC-CCCCC---HHHHHHHHHHHHHHhcCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT-KGIQD---IHQMIKEYLRYCVDYDNS   67 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~-~~~~~---~~~~~~~~l~~~~~~~~~   67 (101)
                      ++++|   +|++.+|+.+++. .|||+|||||     ||+|... .|...   ..+.+.++++.+..+.+.
T Consensus       406 Via~G---GI~~g~Dv~kaLa-lGAdaV~iGr-----~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~  467 (511)
T 1kbi_A          406 VFVDG---GVRRGTDVLKALC-LGAKGVGLGR-----PFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGV  467 (511)
T ss_dssp             EEEES---SCCSHHHHHHHHH-HTCSEEEECH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEEC---CCCCHHHHHHHHH-cCCCEEEECH-----HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCC
Confidence            35677   8999999999997 8999999999     5555431 11111   225677777776666554

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=97.10  E-value=0.00023  Score=48.68  Aligned_cols=35  Identities=14%  Similarity=-0.015  Sum_probs=30.3

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSI   40 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i   40 (101)
                      +++|   .|.+.+|+.+++ ++|||+||+|++++.+++-
T Consensus       202 ia~G---Gi~~~~~~~~~~-~~Ga~~v~vgsal~~~~~~  236 (253)
T 1h5y_A          202 IASG---GAGRVEHFYEAA-AAGADAVLAASLFHFRVLS  236 (253)
T ss_dssp             EEES---CCCSHHHHHHHH-HTTCSEEEESHHHHTTSSC
T ss_pred             EEeC---CCCCHHHHHHHH-HcCCcHHHHHHHHHcCCCC
Confidence            4677   899999999998 5999999999999877643

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*

Probab=97.02  E-value=7.4e-05  Score=55.38  Aligned_cols=61  Identities=15%  Similarity=0.250  Sum_probs=39.5

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHHhcC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYDN   66 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~~~   66 (101)
                      ++++|   +|++.+|+.+++. .|||+|||||+.|..+....+ .+.....+.+.++++.+....+
T Consensus       275 Via~G---GI~~g~Dv~kaLa-lGA~aV~iGr~~l~~l~~~G~-~gv~~~l~~l~~el~~~m~~~G  335 (352)
T 3sgz_A          275 VYMDG---GVRTGTDVLKALA-LGARCIFLGRPILWGLACKGE-DGVKEVLDILTAELHRCMTLSG  335 (352)
T ss_dssp             EEEES---SCCSHHHHHHHHH-TTCSEEEESHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEC---CCCCHHHHHHHHH-cCCCEEEECHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHhC
Confidence            35677   8999999999997 799999999965543332111 1101122556677776655544

>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A

Probab=96.93  E-value=0.00089  Score=48.09  Aligned_cols=32  Identities=9%  Similarity=0.105  Sum_probs=28.6

Q ss_pred             cCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403           3 PSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNC   38 (101)
Q Consensus         3 aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP   38 (101)
                      ++|   .|.|++|+.++++ +|||||++||+++.+|
T Consensus       214 a~G---GI~~~~d~~~~~~-~GadgV~vGsai~~~~  245 (305)
T 2nv1_A          214 AAG---GVATPADAALMMQ-LGADGVFVGSGIFKSD  245 (305)
T ss_dssp             BCS---CCCSHHHHHHHHH-TTCSCEEECGGGGGSS
T ss_pred             ecc---CCCCHHHHHHHHH-cCCCEEEEcHHHHcCC
Confidence            788   7999999999986 8999999999998643

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=96.91  E-value=0.0004  Score=50.69  Aligned_cols=32  Identities=25%  Similarity=0.224  Sum_probs=28.6

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD   36 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~   36 (101)
                      ++++|   +|.+.+|+.+++. .|||+|||||+++.
T Consensus       213 VIa~G---GI~~g~Dv~kala-lGAdaV~iGr~~l~  244 (336)
T 1ypf_A          213 IIADG---GIRTNGDVAKSIR-FGATMVMIGSLFAG  244 (336)
T ss_dssp             EEEES---CCCSTHHHHHHHH-TTCSEEEESGGGTT
T ss_pred             EEEeC---CCCCHHHHHHHHH-cCCCEEEeChhhhc
Confidence            35677   8999999999997 79999999999995

>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A

Probab=96.90  E-value=0.00025  Score=47.52  Aligned_cols=34  Identities=9%  Similarity=-0.120  Sum_probs=31.3

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~   43 (101)
                      .+.+++++.++++ +|+|||++|+++..+||.|.+
T Consensus       182 g~~~~~~~~~~~~-~G~~~~~vg~a~~~~~~~~~~  215 (237)
T 3cwo_X          182 GAGKMEHFLEAFL-AGADAALAASVFHFREIDVRE  215 (237)
T ss_dssp             CCCSHHHHHHHHH-HTCSEEEESHHHHTTSSCHHH
T ss_pred             CCCCHHHHHHHHH-cCcHHHhhhHHHHcCCCCHHH
Confidence            6999999999996 899999999999999988775

>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*

Probab=96.90  E-value=0.00036  Score=51.88  Aligned_cols=59  Identities=15%  Similarity=0.130  Sum_probs=40.6

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCC---HHHHHHHHHHHHHHhcCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQD---IHQMIKEYLRYCVDYDNS   67 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~---~~~~~~~~l~~~~~~~~~   67 (101)
                      ++++|   +|.+.+|+.+++. .|||+|||||+++..+..    .+...   ..+.+.++++....+.+.
T Consensus       281 Via~G---GI~~~~dv~kal~-~GAdaV~iGr~~l~~~~~----~g~~~v~~~~~~l~~el~~~m~~~G~  342 (380)
T 1p4c_A          281 VLIDS---GFRRGSDIVKALA-LGAEAVLLGRATLYGLAA----RGETGVDEVLTLLKADIDRTLAQIGC  342 (380)
T ss_dssp             EEECS---SCCSHHHHHHHHH-TTCSCEEESHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEEC---CCCCHHHHHHHHH-hCCcHhhehHHHHHHHHh----cCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            35677   8999999999997 899999999998754211    11111   124566677766666554

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=96.86  E-value=0.00045  Score=51.46  Aligned_cols=36  Identities=28%  Similarity=0.173  Sum_probs=32.5

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCcc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIF   41 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF   41 (101)
                      +++|   .|.+.+|+.++++ .|||+||+||+++..|..-
T Consensus       260 ia~G---GI~~~~d~~~ala-~GAd~V~iG~~~l~~~e~~  295 (404)
T 1eep_A          260 IADG---GIRFSGDVVKAIA-AGADSVMIGNLFAGTKESP  295 (404)
T ss_dssp             EEES---CCCSHHHHHHHHH-HTCSEEEECHHHHTBTTSS
T ss_pred             EEEC---CCCCHHHHHHHHH-cCCCHHhhCHHHhcCCCCC
Confidence            5677   7999999999997 7999999999999998874

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0

Probab=96.83  E-value=0.00041  Score=51.33  Aligned_cols=58  Identities=17%  Similarity=0.208  Sum_probs=38.2

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCC---CHHHHHHHHHHHHHHhcCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQ---DIHQMIKEYLRYCVDYDNS   67 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~---~~~~~~~~~l~~~~~~~~~   67 (101)
                      +++|   +|.+.+|+.++++ .|||+|||||..+..+..    .+..   ...+.+.++++....+.+.
T Consensus       284 ia~G---GI~~~~D~~k~l~-~GAdaV~iGr~~l~~~~~----~G~~gv~~~~~~l~~el~~~m~~~G~  344 (370)
T 1gox_A          284 FLDG---GVRRGTDVFKALA-LGAAGVFIGRPVVFSLAA----EGEAGVKKVLQMMRDEFELTMALSGC  344 (370)
T ss_dssp             EEES---SCCSHHHHHHHHH-HTCSEEEECHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEC---CCCCHHHHHHHHH-cCCCEEeecHHHHHHHhh----ccHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            5677   8999999999997 899999999965533210    1111   1124566666666555543

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*

Probab=96.82  E-value=0.00046  Score=50.37  Aligned_cols=58  Identities=22%  Similarity=0.093  Sum_probs=38.2

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCC---HHHHHHHHHHHHHHhcCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQD---IHQMIKEYLRYCVDYDNS   67 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~---~~~~~~~~l~~~~~~~~~   67 (101)
                      +++|   +|.|.+|+.+++. .|||+|||||+.+..+..    .+...   ..+.+.++++.+..+.+.
T Consensus       255 ia~G---GI~~~~d~~k~l~-~GAd~V~iG~~~l~~~~~----~g~~~~~~~~~~~~~~l~~~m~~~G~  315 (349)
T 1p0k_A          255 IASG---GLQDALDVAKAIA-LGASCTGMAGHFLKALTD----SGEEGLLEEIQLILEELKLIMTVLGA  315 (349)
T ss_dssp             EEES---SCCSHHHHHHHHH-TTCSEEEECHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             EEEC---CCCCHHHHHHHHH-cCCCEEEEcHHHHHHHhh----cCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            5677   8999999999997 699999999976655421    11111   124455566655555443

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=96.80  E-value=0.00035  Score=48.33  Aligned_cols=38  Identities=26%  Similarity=0.300  Sum_probs=33.4

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~   43 (101)
                      +.||   .|.+++++.++++ .|||+|++|+.++.||+.+.+
T Consensus        78 i~~g---gI~~~~~~~~~~~-~Gad~V~lg~~~l~~p~~~~~  115 (253)
T 1thf_D           78 TVGG---GIHDFETASELIL-RGADKVSINTAAVENPSLITQ  115 (253)
T ss_dssp             EEES---SCCSHHHHHHHHH-TTCSEEEESHHHHHCTHHHHH
T ss_pred             EEeC---CCCCHHHHHHHHH-cCCCEEEEChHHHhChHHHHH
Confidence            4566   8999999999996 699999999999999987755

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}

Probab=96.57  E-value=0.0015  Score=48.37  Aligned_cols=34  Identities=21%  Similarity=0.262  Sum_probs=30.6

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCS   39 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~   39 (101)
                      +++|   .|.+.+|+.+++. .|||+||+||+++..+-
T Consensus       281 ia~G---GI~~~~dv~kala-lGA~~V~iG~~~l~~~e  314 (393)
T 2qr6_A          281 IADG---SIENSGDVVKAIA-CGADAVVLGSPLARAEE  314 (393)
T ss_dssp             EECS---SCCSHHHHHHHHH-HTCSEEEECGGGGGSTT
T ss_pred             EEEC---CCCCHHHHHHHHH-cCCCEEEECHHHHcCCC
Confidence            4666   7999999999996 79999999999999885

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=96.57  E-value=0.00097  Score=48.41  Aligned_cols=35  Identities=17%  Similarity=-0.007  Sum_probs=31.4

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSI   40 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i   40 (101)
                      +++|   .|.|++++.++++ .|+|||++||+.+.+|..
T Consensus       166 iaaG---GI~~~~~~~~al~-~GAdgV~vGs~~l~~~e~  200 (332)
T 2z6i_A          166 IAAG---GIADGEGAAAGFM-LGAEAVQVGTRFVVAKES  200 (332)
T ss_dssp             EEES---SCCSHHHHHHHHH-TTCSEEEECHHHHTBTTC
T ss_pred             EEEC---CCCCHHHHHHHHH-cCCCEEEecHHHhcCccc
Confidence            5667   7999999999997 799999999999999954

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=96.49  E-value=0.0019  Score=49.44  Aligned_cols=38  Identities=24%  Similarity=0.211  Sum_probs=33.3

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~   43 (101)
                      +|.|   .|.+.+|+.++++ .|||+||+||..++.|....+
T Consensus       362 ia~G---GI~~~~di~kala-~GAd~V~iG~~~l~~~e~~~~  399 (514)
T 1jcn_A          362 IADG---GIQTVGHVVKALA-LGASTVMMGSLLAATTEAPGE  399 (514)
T ss_dssp             EEES---CCCSHHHHHHHHH-TTCSEEEESTTTTTSTTSSCC
T ss_pred             EEEC---CCCCHHHHHHHHH-cCCCeeeECHHHHcCCcCCcc
Confidence            5667   7999999999997 799999999999999976554

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=96.44  E-value=0.0018  Score=48.09  Aligned_cols=35  Identities=29%  Similarity=0.283  Sum_probs=30.7

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCS   39 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~   39 (101)
                      ++++|   .|.+.+|+.++++ .|||+||+||..++.+-
T Consensus       202 VIAdG---GI~~~~di~kALa-~GAd~V~iGr~f~~t~E  236 (361)
T 3r2g_A          202 IVADG---GIKTSGDIVKALA-FGADFVMIGGMLAGSAP  236 (361)
T ss_dssp             EEEES---CCCSHHHHHHHHH-TTCSEEEESGGGTTBTT
T ss_pred             EEEEC---CCCCHHHHHHHHH-cCCCEEEEChHHhCCcc
Confidence            35677   7999999999997 79999999999998754

>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*

Probab=96.36  E-value=0.0017  Score=47.71  Aligned_cols=36  Identities=19%  Similarity=0.094  Sum_probs=32.3

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCcc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIF   41 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF   41 (101)
                      ++.|   .|.+++++.++++ .|+|+|++||+.+.+|..-
T Consensus       212 iaaG---GI~~~~~~~~~l~-~GAd~V~vGs~~~~~~e~~  247 (369)
T 3bw2_A          212 VAAG---GIMRGGQIAAVLA-AGADAAQLGTAFLATDESG  247 (369)
T ss_dssp             EEES---SCCSHHHHHHHHH-TTCSEEEESHHHHTSTTCC
T ss_pred             EEEC---CCCCHHHHHHHHH-cCCCEEEEChHHhCCcccC
Confidence            5667   7999999999997 7999999999999999864

>4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis}

Probab=96.35  E-value=0.0014  Score=48.27  Aligned_cols=35  Identities=9%  Similarity=-0.064  Sum_probs=32.2

Q ss_pred             CCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403          10 IVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus        10 I~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      +.|++.++++++.-.||-|.+||.+|.||.+..++
T Consensus       294 ~~~~~~ae~~l~~G~aD~V~~gR~~ladPdlp~k~  328 (358)
T 4a3u_A          294 DYTFETAQAALDSGVADAISFGRPFIGNPDLPRRF  328 (358)
T ss_dssp             SCCHHHHHHHHHHTSCSEEEESHHHHHCTTHHHHH
T ss_pred             CCCHHHHHHHHHcCCceEeHhhHHHHhChhHHHHH
Confidence            88999999999987899999999999999987664

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=96.17  E-value=0.0013  Score=45.27  Aligned_cols=38  Identities=26%  Similarity=0.216  Sum_probs=33.2

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~   43 (101)
                      +.||   .|.++++++.+++ .|||+|++++.++.||+.+.+
T Consensus        78 ~v~g---gi~~~~~~~~~l~-~Gad~V~lg~~~l~~p~~~~~  115 (244)
T 2y88_A           78 ELSG---GIRDDESLAAALA-TGCARVNVGTAALENPQWCAR  115 (244)
T ss_dssp             EEES---SCCSHHHHHHHHH-TTCSEEEECHHHHHCHHHHHH
T ss_pred             EEEC---CCCCHHHHHHHHH-cCCCEEEECchHhhChHHHHH
Confidence            3566   8999999999987 799999999999999987655

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}

Probab=96.17  E-value=0.0021  Score=47.76  Aligned_cols=57  Identities=25%  Similarity=0.143  Sum_probs=37.4

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC-CCCCC---HHHHHHHHHHHHHHhcCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT-KGIQD---IHQMIKEYLRYCVDYDNS   67 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~-~~~~~---~~~~~~~~l~~~~~~~~~   67 (101)
                      +++|   .|++..|+.+++. .|||+|||||..     ++... .+...   .-+.+.+.|+.+..+.+.
T Consensus       282 ia~G---GI~~g~Dv~KaLa-lGAdaV~ig~~~-----l~a~~~~G~~~v~~~l~~l~~eL~~~m~~~G~  342 (365)
T 3sr7_A          282 LASG---GIRHPLDIIKALV-LGAKAVGLSRTM-----LELVEQHSVHEVIAIVNGWKEDLRLIMCALNC  342 (365)
T ss_dssp             EECS---SCCSHHHHHHHHH-HTCSEEEESHHH-----HHHHHHSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             EEeC---CCCCHHHHHHHHH-cCCCEEEECHHH-----HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCC
Confidence            5677   8999999999997 999999999954     44221 12111   124455666655555443

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=96.17  E-value=0.0014  Score=45.24  Aligned_cols=38  Identities=16%  Similarity=0.153  Sum_probs=32.8

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~   43 (101)
                      +++|   .|.+.++++++++ .|||+|++|+.++.+|..+.+
T Consensus        79 i~~G---gi~~~~~~~~~~~-~Gad~V~lg~~~l~~p~~~~~  116 (252)
T 1ka9_F           79 TVGG---GVRSLEDARKLLL-SGADKVSVNSAAVRRPELIRE  116 (252)
T ss_dssp             EEES---SCCSHHHHHHHHH-HTCSEEEECHHHHHCTHHHHH
T ss_pred             EEEC---CcCCHHHHHHHHH-cCCCEEEEChHHHhCcHHHHH
Confidence            3456   7999999999997 699999999999999987654

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=96.12  E-value=0.0015  Score=44.55  Aligned_cols=38  Identities=16%  Similarity=0.104  Sum_probs=32.7

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~   43 (101)
                      ++||   .|.++++++++++ .|||+|+|++.++.+|+.+.+
T Consensus        81 i~~g---~i~~~~~~~~~~~-~Gad~V~i~~~~~~~~~~~~~  118 (253)
T 1h5y_A           81 LVGG---GVRSLEDATTLFR-AGADKVSVNTAAVRNPQLVAL  118 (253)
T ss_dssp             EEES---SCCSHHHHHHHHH-HTCSEEEESHHHHHCTHHHHH
T ss_pred             EEEC---CCCCHHHHHHHHH-cCCCEEEEChHHhhCcHHHHH
Confidence            4566   8999999988876 799999999999999987654

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=96.11  E-value=0.0018  Score=44.01  Aligned_cols=34  Identities=6%  Similarity=0.009  Sum_probs=28.0

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSI   40 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i   40 (101)
                      +++|   .|.|++|+.++++ .|||+|++||+.+ +|+.
T Consensus       179 ia~G---GI~~~~~~~~~~~-~Gad~v~vG~al~-~p~~  212 (223)
T 1y0e_A          179 IAEG---NVITPDMYKRVMD-LGVHCSVVGGAIT-RPKE  212 (223)
T ss_dssp             EEES---SCCSHHHHHHHHH-TTCSEEEECHHHH-CHHH
T ss_pred             EEec---CCCCHHHHHHHHH-cCCCEEEEChHHc-CcHH
Confidence            5667   7999999999996 6999999998854 4653

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=95.96  E-value=0.0031  Score=47.90  Aligned_cols=35  Identities=29%  Similarity=0.234  Sum_probs=30.9

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSI   40 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i   40 (101)
                      ++.|   .|.+.+|+.++++ .|||+||+||+.+..|-.
T Consensus       344 ia~G---GI~~~~di~kala-~GAd~V~iGr~~l~~~e~  378 (494)
T 1vrd_A          344 IADG---GIRYSGDIVKALA-AGAESVMVGSIFAGTEEA  378 (494)
T ss_dssp             EEES---CCCSHHHHHHHHH-TTCSEEEESHHHHTBTTS
T ss_pred             EEEC---CcCCHHHHHHHHH-cCCCEEEECHHHhcCCcC
Confidence            4566   7999999999997 699999999999987765

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=95.89  E-value=0.002  Score=44.34  Aligned_cols=38  Identities=24%  Similarity=0.193  Sum_probs=33.1

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~   43 (101)
                      +.||   .|.++++++.+++ .|||+|++++.++.||+.+.+
T Consensus        79 ~v~g---gI~~~~~~~~~l~-~Gad~V~lg~~~l~~p~~~~~  116 (244)
T 1vzw_A           79 ELSG---GIRDDDTLAAALA-TGCTRVNLGTAALETPEWVAK  116 (244)
T ss_dssp             EEES---SCCSHHHHHHHHH-TTCSEEEECHHHHHCHHHHHH
T ss_pred             EEEC---CcCCHHHHHHHHH-cCCCEEEECchHhhCHHHHHH
Confidence            3566   8999999999887 799999999999999987655

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=95.89  E-value=0.0023  Score=43.84  Aligned_cols=31  Identities=13%  Similarity=0.146  Sum_probs=26.9

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD   36 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~   36 (101)
                      ++.|   .|.|++|+.++++ .|||+|++|++.+.
T Consensus       190 ia~G---GI~s~~~~~~~~~-~Gad~v~vGsal~~  220 (234)
T 1yxy_A          190 IAEG---KIHSPEEAKKIND-LGVAGIVVGGAITR  220 (234)
T ss_dssp             EEES---CCCSHHHHHHHHT-TCCSEEEECHHHHC
T ss_pred             EEEC---CCCCHHHHHHHHH-CCCCEEEEchHHhC
Confidence            4566   7999999999996 69999999998765

>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*

Probab=95.87  E-value=0.0035  Score=45.24  Aligned_cols=34  Identities=18%  Similarity=0.145  Sum_probs=30.8

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCS   39 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~   39 (101)
                      +++|   .|.+.+|+.++++ .|+|||++|++.+..|.
T Consensus       176 iaaG---GI~~~~~v~~al~-~GAdgV~vGs~~~~~~e  209 (328)
T 2gjl_A          176 IASG---GFADGRGLVAALA-LGADAINMGTRFLATRE  209 (328)
T ss_dssp             EEES---SCCSHHHHHHHHH-HTCSEEEESHHHHTSSS
T ss_pred             EEEC---CCCCHHHHHHHHH-cCCCEEEECHHHHcCcc
Confidence            4566   7999999999997 79999999999999997

>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*

Probab=95.82  E-value=0.0037  Score=46.37  Aligned_cols=56  Identities=20%  Similarity=0.014  Sum_probs=36.9

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCC---HHHHHHHHHHHHHHhcC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQD---IHQMIKEYLRYCVDYDN   66 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~---~~~~~~~~l~~~~~~~~   66 (101)
                      +++|   +|.+..|+.+++. .|||+||+||     ||++....++..   ..+.+.+.++.+..+.+
T Consensus       271 ia~G---GI~~~~d~~kal~-lGA~~v~ig~-----~~l~~~~~G~~~v~~~l~~l~~eL~~~m~~~G  329 (368)
T 3vkj_A          271 VGSG---GIRSGLDAAKAIA-LGADIAGMAL-----PVLKSAIEGKESLEQFFRKIIFELKAAMMLTG  329 (368)
T ss_dssp             EEES---SCCSHHHHHHHHH-HTCSEEEECH-----HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEC---CCCCHHHHHHHHH-cCCCEEEEcH-----HHHHHHhcChHHHHHHHHHHHHHHHHHHHHhC
Confidence            5677   8999999999998 6999999998     555432112111   12445566665555544

>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*

Probab=95.77  E-value=0.0089  Score=42.46  Aligned_cols=31  Identities=10%  Similarity=0.113  Sum_probs=27.2

Q ss_pred             cCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403           3 PSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN   37 (101)
Q Consensus         3 aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n   37 (101)
                      +.|   .|.|++|+.++++ .|||+|++|++++..
T Consensus       214 a~G---GI~~~e~i~~~~~-aGadgvvvGsai~~~  244 (297)
T 2zbt_A          214 AAG---GIATPADAALMMH-LGMDGVFVGSGIFKS  244 (297)
T ss_dssp             BCS---SCCSHHHHHHHHH-TTCSEEEECGGGGGS
T ss_pred             eeC---CCCCHHHHHHHHH-cCCCEEEEchHHhCC
Confidence            677   7999999999986 699999999998853

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=95.77  E-value=0.005  Score=47.23  Aligned_cols=34  Identities=29%  Similarity=0.208  Sum_probs=28.9

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNC   38 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP   38 (101)
                      ++|+|   .|.+.+|+.++++ .|||+||+|+..++-+
T Consensus       337 VIa~G---GI~~~~di~kala-~GAd~V~iGs~f~~t~  370 (496)
T 4fxs_A          337 VIADG---GIRFSGDISKAIA-AGASCVMVGSMFAGTE  370 (496)
T ss_dssp             EEEES---CCCSHHHHHHHHH-TTCSEEEESTTTTTBT
T ss_pred             EEEeC---CCCCHHHHHHHHH-cCCCeEEecHHHhcCC
Confidence            35677   7999999999996 5999999999987744

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=95.76  E-value=0.0056  Score=45.24  Aligned_cols=35  Identities=34%  Similarity=0.198  Sum_probs=30.6

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSI   40 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i   40 (101)
                      +|.|   .|.+.+|+.++++ .|||+||+|+..++.|--
T Consensus       211 IA~G---GI~~~~di~kala-~GAd~V~vGs~~~~t~Es  245 (361)
T 3khj_A          211 IADG---GIRYSGDIGKALA-VGASSVMIGSILAGTEES  245 (361)
T ss_dssp             EEES---CCCSHHHHHHHHH-HTCSEEEESTTTTTBTTS
T ss_pred             EEEC---CCCCHHHHHHHHH-cCCCEEEEChhhhcCCcC
Confidence            5677   7999999999997 599999999999987753

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=95.60  E-value=0.0043  Score=43.42  Aligned_cols=38  Identities=13%  Similarity=0.151  Sum_probs=29.7

Q ss_pred             ccCCCCCCCC--CHHHHHHHHH---hcCCCeeeeecccccCCCccC
Q psy4403           2 DPSGGSKEIV--DYGGILKFKA---DTNASSVMIARAAQDNCSIFS   42 (101)
Q Consensus         2 ~aNGgsGDI~--s~~d~~~~~~---~tg~dgvMigRgAl~nP~iF~   42 (101)
                      ++.|   .|.  +.+|+.++.+   .+|++||++||+++.+|+++.
T Consensus       206 va~G---Gi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~~~~~~~  248 (273)
T 2qjg_A          206 VVAG---GPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQHDDVVG  248 (273)
T ss_dssp             EEEC---CSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHTSSSHHH
T ss_pred             EEEe---CCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhCCCCHHH
Confidence            4566   688  4889666554   689999999999999987654

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=95.58  E-value=0.0072  Score=46.24  Aligned_cols=35  Identities=20%  Similarity=0.152  Sum_probs=29.7

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCS   39 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~   39 (101)
                      ++|.|   .|.+.+|+.++++ .|||+||+|+..++-+-
T Consensus       335 VIa~G---GI~~~~di~kal~-~GAd~V~vGs~~~~~~E  369 (490)
T 4avf_A          335 LIADG---GIRFSGDLAKAMV-AGAYCVMMGSMFAGTEE  369 (490)
T ss_dssp             EEEES---CCCSHHHHHHHHH-HTCSEEEECTTTTTBTT
T ss_pred             EEEeC---CCCCHHHHHHHHH-cCCCeeeecHHHhcCCC
Confidence            35677   7999999999996 59999999999887553

>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}

Probab=95.51  E-value=0.0056  Score=44.40  Aligned_cols=35  Identities=20%  Similarity=0.136  Sum_probs=31.3

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSI   40 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i   40 (101)
                      ++.|   .|.|.+|+.++++ .|++||++|++.+..|..
T Consensus       180 iaaG---GI~~~~dv~~al~-~GA~gV~vGs~~~~~~e~  214 (326)
T 3bo9_A          180 IAAG---GIADGRGMAAAFA-LGAEAVQMGTRFVASVES  214 (326)
T ss_dssp             EEES---SCCSHHHHHHHHH-HTCSEEEESHHHHTBSSC
T ss_pred             EEEC---CCCCHHHHHHHHH-hCCCEEEechHHHcCccc
Confidence            4667   7999999999997 799999999999998874

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=95.50  E-value=0.0075  Score=45.29  Aligned_cols=35  Identities=34%  Similarity=0.239  Sum_probs=30.3

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCS   39 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~   39 (101)
                      ++|.|   .|.+.+|+.++++ .||++||+|+..+.-+-
T Consensus       249 VIA~G---GI~~~~di~kala-lGAd~V~vGt~f~~t~E  283 (400)
T 3ffs_A          249 IIADG---GIRYSGDIGKALA-VGASSVMIGSILAGTEE  283 (400)
T ss_dssp             EEEES---CCCSHHHHHHHHT-TTCSEEEECGGGTTBTT
T ss_pred             EEecC---CCCCHHHHHHHHH-cCCCEEEEChHHhcCCC
Confidence            35677   7999999999996 69999999999988664

>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A

Probab=94.99  E-value=0.0059  Score=42.67  Aligned_cols=33  Identities=12%  Similarity=0.154  Sum_probs=30.0

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~   43 (101)
                      .|+|+++++++.  .|||+|.+|-++..||.++.+
T Consensus       188 GI~t~e~a~~~~--~gAD~VVVGSa~v~~p~~~~~  220 (228)
T 3vzx_A          188 GIKDAETAKQYA--EHADVIVVGNAVYEDFDRALK  220 (228)
T ss_dssp             SCCSHHHHHHHH--TTCSEEEECTHHHHCHHHHHH
T ss_pred             CCCCHHHHHHHH--hCCCEEEEChHHhcCHHHHHH
Confidence            799999999998  399999999999999987765

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=94.93  E-value=0.014  Score=44.94  Aligned_cols=34  Identities=24%  Similarity=0.208  Sum_probs=28.3

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCS   39 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~   39 (101)
                      +|.|   .|.+.+|+.++++ .||++||+||..++-.-
T Consensus       363 Ia~G---GI~~~~di~kala-~GA~~V~vGs~~~~~~e  396 (511)
T 3usb_A          363 IADG---GIKYSGDMVKALA-AGAHVVMLGSMFAGVAE  396 (511)
T ss_dssp             EEES---CCCSHHHHHHHHH-TTCSEEEESTTTTTBTT
T ss_pred             EEeC---CCCCHHHHHHHHH-hCchhheecHHHhcCcc
Confidence            5667   7999999999996 69999999997655443

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=94.75  E-value=0.018  Score=42.70  Aligned_cols=35  Identities=29%  Similarity=0.181  Sum_probs=29.9

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSI   40 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i   40 (101)
                      +|.|   .|.+.+|+.+++. .|||+||+|+..++-+--
T Consensus       215 IA~G---GI~~~~di~kala-~GAd~V~vGs~f~~t~Es  249 (366)
T 4fo4_A          215 IADG---GIRFSGDISKAIA-AGASCVMVGSMFAGTEEA  249 (366)
T ss_dssp             EEES---CCCSHHHHHHHHH-TTCSEEEESTTTTTBTTS
T ss_pred             EEeC---CCCCHHHHHHHHH-cCCCEEEEChHhhcCCCC
Confidence            5667   7999999999997 599999999998886653

>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1

Probab=94.68  E-value=0.0094  Score=41.86  Aligned_cols=33  Identities=12%  Similarity=0.243  Sum_probs=29.9

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCC-ccCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCS-IFSP   43 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~-iF~~   43 (101)
                      .|+|+++++++++  |||+|.+|-++..+|. ++.+
T Consensus       190 GI~t~e~a~~~~~--gAd~VIVGSa~v~~~~~~~~~  223 (240)
T 1viz_A          190 GIKDAETAKQYAE--HADVIVVGNAVYEDFDRALKT  223 (240)
T ss_dssp             SCCSHHHHHHHHT--TCSEEEECTHHHHCHHHHHTH
T ss_pred             ccCCHHHHHHHHh--CCCEEEEChHHHhCHHHHHHH
Confidence            6999999999886  9999999999999998 6655

>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*

Probab=94.67  E-value=0.011  Score=42.74  Aligned_cols=36  Identities=14%  Similarity=0.099  Sum_probs=31.1

Q ss_pred             CCCCCHHHHHHHHHhcCCCeeeeecccccC--CCccCCC
Q psy4403           8 KEIVDYGGILKFKADTNASSVMIARAAQDN--CSIFSPT   44 (101)
Q Consensus         8 GDI~s~~d~~~~~~~tg~dgvMigRgAl~n--P~iF~~~   44 (101)
                      |.|+|++|++++++ .|||+|.+|.+++.|  |.++.++
T Consensus       234 GGIrs~Eda~~ll~-aGAD~VVVGSAav~d~~Pelv~e~  271 (286)
T 3vk5_A          234 GNVRSGRQVTEYLD-SGADYVGFAGALEQPDWRSALAEI  271 (286)
T ss_dssp             SSCCSHHHHHHHHH-TTCSEEEESGGGSSTTHHHHHHHH
T ss_pred             eCCCCHHHHHHHHH-cCCCEEEECchhhcCCCHHHHHHH
Confidence            37999999999995 799999999999999  6666553

>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A

Probab=94.52  E-value=0.016  Score=41.83  Aligned_cols=49  Identities=8%  Similarity=0.140  Sum_probs=35.8

Q ss_pred             cCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCCCCCCHHHHHHHHHHHHHHhc
Q psy4403           3 PSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTKGIQDIHQMIKEYLRYCVDYD   65 (101)
Q Consensus         3 aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~~~~~~~~~~~~~l~~~~~~~   65 (101)
                      +.|   .|.+++|+.++++ .|||+|++|++++..|          .+.+.++++.+...+|.
T Consensus       214 A~G---GI~t~~dv~~~~~-~GAdgVlVGsai~~a~----------dp~~~~~~l~~ai~~~~  262 (297)
T 4adt_A          214 AAG---GIATPADAAMCMQ-LGMDGVFVGSGIFESE----------NPQKMASSIVMAVSNFN  262 (297)
T ss_dssp             EES---CCCSHHHHHHHHH-TTCSCEEESHHHHTSS----------CHHHHHHHHHHHHHTTT
T ss_pred             ecC---CCCCHHHHHHHHH-cCCCEEEEhHHHHcCC----------CHHHHHHHHHHHHHhhC
Confidence            667   7999999999986 5999999999987643          22345566665554443

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4

Probab=94.36  E-value=0.0087  Score=42.13  Aligned_cols=30  Identities=7%  Similarity=0.033  Sum_probs=27.2

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSI   40 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i   40 (101)
                      .|.|++|+.++++  |++||.||.+.+..|.+
T Consensus       216 GI~s~~dv~~l~~--Ga~gvlVGsAl~~~~d~  245 (254)
T 1vc4_A          216 GYSRKEELKALEG--LFDAVLIGTSLMRAPDL  245 (254)
T ss_dssp             CCCSHHHHHTTTT--TCSEEEECHHHHTSSCH
T ss_pred             CCCCHHHHHHHHc--CCCEEEEeHHHcCCCCH
Confidence            6999999999987  99999999999987754

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=94.25  E-value=0.034  Score=42.05  Aligned_cols=38  Identities=21%  Similarity=0.161  Sum_probs=31.7

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~   43 (101)
                      ++.|   .|.+.+|+.++++ .|+++||+||..+..+....+
T Consensus       340 ia~G---Gi~~~~di~kal~-~GA~~v~vG~~~~~~~e~~~~  377 (491)
T 1zfj_A          340 IADG---GIKYSGDIVKALA-AGGNAVMLGSMFAGTDEAPGE  377 (491)
T ss_dssp             EEES---CCCSHHHHHHHHH-TTCSEEEESTTTTTBSSCCCC
T ss_pred             EeeC---CCCCHHHHHHHHH-cCCcceeeCHHhhCCCcCcce
Confidence            4556   7999999999996 799999999999987765544

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=93.97  E-value=0.015  Score=40.34  Aligned_cols=34  Identities=9%  Similarity=-0.001  Sum_probs=27.7

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccc-c--CCCccCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQ-D--NCSIFSP   43 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl-~--nP~iF~~   43 (101)
                      .|.+.+++.++++ .|||+|++|+.++ .  +|..+.+
T Consensus        82 gi~~~~~i~~~~~-~Gad~v~lg~~~~~~~~~~~~~~~  118 (266)
T 2w6r_A           82 GAGKMEHFLEAFL-AGADKALAASVFHFREIDMRELKE  118 (266)
T ss_dssp             CCCSTHHHHHHHH-HTCSEEECCCCC------CHHHHH
T ss_pred             CCCCHHHHHHHHH-cCCcHhhhhHHHHhCCCCHHHHHH
Confidence            7999999999885 7999999999999 6  8987755

>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*

Probab=93.82  E-value=0.023  Score=39.73  Aligned_cols=30  Identities=7%  Similarity=0.005  Sum_probs=27.3

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSI   40 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i   40 (101)
                      .|+|+++++++.+  |||+|.+|-++..+|-=
T Consensus       198 GI~s~e~a~~~~~--gAd~VIVGSa~v~~~~~  227 (234)
T 2f6u_A          198 GIDSREKAREMLR--YADTIIVGNVIYEKGID  227 (234)
T ss_dssp             CCCSHHHHHHHHH--HSSEEEECHHHHHHCHH
T ss_pred             cCCCHHHHHHHHh--CCCEEEEChHHHhCHHH
Confidence            6999999999887  99999999999998853

>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A

Probab=93.71  E-value=0.016  Score=40.67  Aligned_cols=34  Identities=12%  Similarity=0.051  Sum_probs=30.8

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      .|.|+++++++.+  |+|+|.+|-++..||-.|.++
T Consensus       194 GI~~~e~a~~~~~--gAD~VVVGSai~~~~~~~~e~  227 (235)
T 3w01_A          194 GISSEQQATEMAA--IADTIIVGDIIYKDIKKALKT  227 (235)
T ss_dssp             CCCSHHHHHHHHT--TSSEEEECTHHHHCHHHHHHT
T ss_pred             CcCCHHHHHHHHc--CCCEEEECCceecCHHHHHHH
Confidence            7999999999886  999999999999999887764

>4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A*

Probab=93.64  E-value=0.014  Score=43.52  Aligned_cols=40  Identities=8%  Similarity=0.019  Sum_probs=33.2

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      +++|   .+.+.+++.+.+..-+||-|.+||.+|.||.+..++
T Consensus       322 i~~G---~~~~~~~~~~~~~~~~aDlV~~gR~~iadPdl~~k~  361 (400)
T 4gbu_A          322 IRAG---NFALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRL  361 (400)
T ss_dssp             EEES---SCTTCHHHHHHHTTSTTEEEECCHHHHHCTTHHHHH
T ss_pred             EEeC---CCCChHHHHHHHHcCCCeEhHHHHHHHHCcHHHHHH
Confidence            4556   788877777777777899999999999999988765

>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1

Probab=93.00  E-value=0.049  Score=38.85  Aligned_cols=30  Identities=7%  Similarity=-0.051  Sum_probs=25.8

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQ   35 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl   35 (101)
                      ++.|   .|.+++|+.++++ .|||||++|-+..
T Consensus       191 I~eG---GI~TPsDAa~Ame-LGAdgVlVgSAI~  220 (265)
T 1wv2_A          191 LVDA---GVGTASDAAIAME-LGCEAVLMNTAIA  220 (265)
T ss_dssp             EEES---CCCSHHHHHHHHH-HTCSEEEESHHHH
T ss_pred             EEeC---CCCCHHHHHHHHH-cCCCEEEEChHHh
Confidence            4556   6999999999997 5999999998874

>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...

Probab=92.73  E-value=0.072  Score=37.85  Aligned_cols=29  Identities=14%  Similarity=0.227  Sum_probs=26.5

Q ss_pred             CCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403          10 IVDYGGILKFKADTNASSVMIARAAQDNCS   39 (101)
Q Consensus        10 I~s~~d~~~~~~~tg~dgvMigRgAl~nP~   39 (101)
                      |.|++|+.++. ..|+|||.||...|.+|.
T Consensus       213 I~t~~dv~~l~-~~G~~a~LVGealmr~~d  241 (258)
T 4a29_A          213 ISERNEIEELR-KLGVNAFLISSSLMRNPE  241 (258)
T ss_dssp             SCCHHHHHHHH-HTTCCEEEECHHHHHCTT
T ss_pred             CCCHHHHHHHH-HCCCCEEEECHHHhCCCc
Confidence            99999998876 589999999999999874

>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*

Probab=92.69  E-value=0.035  Score=37.53  Aligned_cols=32  Identities=9%  Similarity=0.118  Sum_probs=27.2

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNC   38 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP   38 (101)
                      ++-|   .| +++++.++++ +|+++|.+|++.+.+|
T Consensus       168 ia~G---GI-~~~nv~~~~~-~Ga~gv~vgs~i~~~~  199 (221)
T 1yad_A          168 IAIG---GM-TPDRLRDVKQ-AGADGIAVMSGIFSSA  199 (221)
T ss_dssp             EEES---SC-CGGGHHHHHH-TTCSEEEESHHHHTSS
T ss_pred             EEEC---CC-CHHHHHHHHH-cCCCEEEEhHHhhCCC
Confidence            3456   69 9999999997 8999999999998754

>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}

Probab=92.49  E-value=0.042  Score=38.22  Aligned_cols=34  Identities=12%  Similarity=0.113  Sum_probs=31.4

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~   43 (101)
                      .|+|.+|++++++ .|+|-|.|+-.|+.||.++.+
T Consensus        83 GIrs~e~~~~~l~-~GadkVii~t~a~~~p~li~e  116 (243)
T 4gj1_A           83 GIRSKEEVKALLD-CGVKRVVIGSMAIKDATLCLE  116 (243)
T ss_dssp             SCCCHHHHHHHHH-TTCSEEEECTTTTTCHHHHHH
T ss_pred             ccccHHHHHHHHH-cCCCEEEEccccccCCchHHH
Confidence            6999999999995 899999999999999998754

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=92.35  E-value=0.065  Score=38.22  Aligned_cols=31  Identities=10%  Similarity=0.239  Sum_probs=27.5

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSI   40 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i   40 (101)
                      .|.|++|+.++. ..|++||.||.+.+..|.+
T Consensus       228 GI~t~edv~~l~-~~Ga~gvLVG~almr~~d~  258 (272)
T 3tsm_A          228 GIFTHEDCLRLE-KSGIGTFLIGESLMRQHDV  258 (272)
T ss_dssp             SCCSHHHHHHHH-TTTCCEEEECHHHHTSSCH
T ss_pred             CCCCHHHHHHHH-HcCCCEEEEcHHHcCCcCH
Confidence            599999998887 6899999999999987754

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=91.10  E-value=0.12  Score=36.76  Aligned_cols=29  Identities=10%  Similarity=0.257  Sum_probs=25.7

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNC   38 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP   38 (101)
                      .|.|++|+.++. ..|++||.||.+.+..|
T Consensus       221 GI~t~edv~~l~-~~GadgvlVGsal~~a~  249 (272)
T 3qja_A          221 GVRGTADLLAYA-GAGADAVLVGEGLVTSG  249 (272)
T ss_dssp             CCCSHHHHHHHH-HTTCSEEEECHHHHTCS
T ss_pred             CCCCHHHHHHHH-HcCCCEEEEcHHHhCCC
Confidence            699999999887 57999999999998655

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=91.02  E-value=0.13  Score=39.01  Aligned_cols=31  Identities=29%  Similarity=0.298  Sum_probs=27.2

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD   36 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~   36 (101)
                      +|.|   .|.+..|+.+.+. .|||+||+|+..+.
T Consensus       332 ia~G---Gi~~~~di~kala-lGA~~v~~g~~~~~  362 (486)
T 2cu0_A          332 IADG---GIRYSGDIVKAIA-AGADAVMLGNLLAG  362 (486)
T ss_dssp             EEES---CCCSHHHHHHHHH-TTCSEEEESTTTTT
T ss_pred             EecC---CCCCHHHHHHHHH-cCCCceeeChhhhc
Confidence            4666   6999999999996 99999999998774

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*

Probab=91.01  E-value=0.14  Score=37.54  Aligned_cols=33  Identities=18%  Similarity=0.119  Sum_probs=27.8

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNC   38 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP   38 (101)
                      ++-|   .|.+..|+.+++. .|||+||+||..+.-+
T Consensus       227 Ia~G---GI~~g~di~kAla-lGA~~V~vG~~fl~~~  259 (351)
T 2c6q_A          227 ISDG---GCSCPGDVAKAFG-AGADFVMLGGMLAGHS  259 (351)
T ss_dssp             EEES---CCCSHHHHHHHHH-TTCSEEEESTTTTTBT
T ss_pred             EEeC---CCCCHHHHHHHHH-cCCCceeccHHHhcCc
Confidence            4455   6999999999995 6999999999888643

>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1

Probab=90.32  E-value=0.063  Score=35.71  Aligned_cols=28  Identities=11%  Similarity=0.025  Sum_probs=24.5

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNC   38 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP   38 (101)
                      .|. ++++.++++ +|++||++|++.+..|
T Consensus       170 GI~-~~nv~~~~~-~Ga~gv~vgs~i~~~~  197 (215)
T 1xi3_A          170 GIN-KDNAREVLK-TGVDGIAVISAVMGAE  197 (215)
T ss_dssp             SCC-TTTHHHHHT-TTCSEEEESHHHHTSS
T ss_pred             CcC-HHHHHHHHH-cCCCEEEEhHHHhCCC
Confidence            688 999999875 8999999999998765

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=90.03  E-value=0.14  Score=39.13  Aligned_cols=31  Identities=23%  Similarity=0.081  Sum_probs=26.8

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD   36 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~   36 (101)
                      +|-|   .|++..|+.+++. .||++||+|+..++
T Consensus       356 ia~G---Gi~~~~di~kAla-lGA~~V~iG~~~~~  386 (503)
T 1me8_A          356 CSDG---GIVYDYHMTLALA-MGADFIMLGRYFAR  386 (503)
T ss_dssp             EEES---CCCSHHHHHHHHH-TTCSEEEESHHHHT
T ss_pred             EEeC---CCCCHHHHHHHHH-cCCCEEEECchhhc
Confidence            4556   7999999999996 69999999998765

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1

Probab=89.91  E-value=0.18  Score=34.57  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=19.7

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCee
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSV   28 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgv   28 (101)
                      ++||   +|+|++|+.++++ +|||-|
T Consensus       179 ia~G---GI~t~~da~~~l~-aGA~~i  201 (225)
T 1mzh_A          179 KASG---GIRDLETAISMIE-AGADRI  201 (225)
T ss_dssp             EEES---SCCSHHHHHHHHH-TTCSEE
T ss_pred             EEEC---CCCCHHHHHHHHH-hCchHH
Confidence            5677   8999999999997 899944

>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A

Probab=89.43  E-value=0.27  Score=34.48  Aligned_cols=28  Identities=14%  Similarity=0.025  Sum_probs=24.1

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDN   37 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~n   37 (101)
                      .|.+++|+.++++ .|||||.+|.+.+..
T Consensus       186 GI~t~eda~~~~~-~GAdgViVGSAi~~a  213 (264)
T 1xm3_A          186 GIGSPKDAAYAME-LGADGVLLNTAVSGA  213 (264)
T ss_dssp             CCCSHHHHHHHHH-TTCSEEEESHHHHTS
T ss_pred             CCCCHHHHHHHHH-cCCCEEEEcHHHhCC
Confidence            5999999999875 799999999986543

>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A

Probab=86.60  E-value=0.18  Score=35.44  Aligned_cols=30  Identities=10%  Similarity=0.165  Sum_probs=26.4

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSI   40 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i   40 (101)
                      .|.|++|+.++++.  +++|.||.+.+..|.+
T Consensus       210 GI~t~edv~~~~~~--a~avLVG~aimr~~d~  239 (251)
T 1i4n_A          210 GIKDPRELKDLRGK--VNAVLVGTSIMKAENP  239 (251)
T ss_dssp             CCCCGGGHHHHTTT--CSEEEECHHHHHCSSH
T ss_pred             CCCCHHHHHHHHHh--CCEEEEcHHHcCCcCH
Confidence            59999999999875  9999999999986654

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}

Probab=86.27  E-value=0.42  Score=35.12  Aligned_cols=25  Identities=20%  Similarity=0.364  Sum_probs=22.2

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeeccc
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAA   34 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgA   34 (101)
                      +|.|++|++++.+ .|||+|++++|.
T Consensus       218 gi~t~e~a~~~~~-~Gad~i~vg~Gg  242 (393)
T 2qr6_A          218 GVNDYTTALHMMR-TGAVGIIVGGGE  242 (393)
T ss_dssp             CCCSHHHHHHHHT-TTCSEEEESCCS
T ss_pred             CcCCHHHHHHHHH-cCCCEEEECCCc
Confidence            7999999988875 999999999865

>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}

Probab=85.68  E-value=0.42  Score=34.07  Aligned_cols=26  Identities=8%  Similarity=-0.020  Sum_probs=23.7

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQ   35 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl   35 (101)
                      .|.+++|+..+++ .|||||++|-|..
T Consensus       186 GI~tpsDAa~Ame-LGAdgVlVgSAI~  211 (268)
T 2htm_A          186 GLGLPSHAAEVME-LGLDAVLVNTAIA  211 (268)
T ss_dssp             CCCSHHHHHHHHH-TTCCEEEESHHHH
T ss_pred             CCCCHHHHHHHHH-cCCCEEEEChHHh
Confidence            6999999999996 8999999998875

>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A

Probab=84.98  E-value=0.69  Score=32.40  Aligned_cols=31  Identities=13%  Similarity=0.062  Sum_probs=26.4

Q ss_pred             CCCC--CHHHHHHHHH---hcCCCeeeeecccccCC
Q psy4403           8 KEIV--DYGGILKFKA---DTNASSVMIARAAQDNC   38 (101)
Q Consensus         8 GDI~--s~~d~~~~~~---~tg~dgvMigRgAl~nP   38 (101)
                      |.|.  |.+|+.++.+   +.|++|+-+||.++..|
T Consensus       203 GGi~~~~~~~~l~~i~~~~~aGA~GvsvgraI~~~~  238 (263)
T 1w8s_A          203 GGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRR  238 (263)
T ss_dssp             CCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTST
T ss_pred             eCCCCCCHHHHHHHHHHHHHcCCeEEEEehhhcCCc
Confidence            3688  9999998885   58999999999988765

>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}

Probab=84.17  E-value=0.74  Score=31.30  Aligned_cols=29  Identities=17%  Similarity=0.102  Sum_probs=24.6

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNC   38 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP   38 (101)
                      .|.+++++..+. ..|+|||.+|.+.+.-+
T Consensus       178 GI~~~~~~~~~~-~~gaDgvlVGsAi~~~~  206 (219)
T 2h6r_A          178 GISKGEDVKAAL-DLGAEGVLLASGVVKAK  206 (219)
T ss_dssp             SCCSHHHHHHHH-TTTCCCEEESHHHHTCS
T ss_pred             CcCcHHHHHHHh-hCCCCEEEEcHHHhCcc
Confidence            699999998875 57999999998888644

>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A

Probab=82.35  E-value=0.63  Score=35.39  Aligned_cols=30  Identities=17%  Similarity=0.216  Sum_probs=27.1

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSI   40 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i   40 (101)
                      .|.|++|+.++.+.  ++||.||.+.+..|.+
T Consensus       216 GI~t~edv~~~~~~--a~avLVGealmr~~d~  245 (452)
T 1pii_A          216 GINTYAQVRELSHF--ANGFLIGSALMAHDDL  245 (452)
T ss_dssp             CCCCHHHHHHHTTT--CSEEEECHHHHTCSCH
T ss_pred             CCCCHHHHHHHHHh--CCEEEEcHHHcCCcCH
Confidence            59999999999876  9999999999998764

>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*

Probab=82.34  E-value=0.28  Score=32.86  Aligned_cols=27  Identities=15%  Similarity=0.106  Sum_probs=23.2

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDN   37 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~n   37 (101)
                      .|. ++++.++++ +|++||.+|++.+..
T Consensus       180 GI~-~~nv~~~~~-~Ga~gv~vgs~i~~~  206 (227)
T 2tps_A          180 GIT-IDNAAPVIQ-AGADGVSMISAISQA  206 (227)
T ss_dssp             SCC-TTTSHHHHH-TTCSEEEESHHHHTS
T ss_pred             CCC-HHHHHHHHH-cCCCEEEEhHHhhcC
Confidence            687 999998875 899999999998764

>2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti}

Probab=81.18  E-value=0.71  Score=33.72  Aligned_cols=36  Identities=6%  Similarity=-0.000  Sum_probs=33.3

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      .+.++++++++++...||.|++-.+.++.++-+.++
T Consensus       249 ~i~~~~~~~~~i~~~~~d~v~ik~~~~GGit~~~~i  284 (384)
T 2pgw_A          249 AAFTLYDVYEICRQRAADMICIGPREIGGIQPMMKA  284 (384)
T ss_dssp             TCCSHHHHHHHHHTTCCSEEEECHHHHTSHHHHHHH
T ss_pred             CcCCHHHHHHHHHcCCCCEEEEcchhhCCHHHHHHH
Confidence            899999999999999999999999999999977664

>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1

Probab=80.09  E-value=1.5  Score=30.25  Aligned_cols=30  Identities=13%  Similarity=0.100  Sum_probs=24.8

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCS   39 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~   39 (101)
                      .|.+.+|+..+. ..|+||+.||++.|.-+.
T Consensus       184 sV~~~n~~~~~~-~~~vDG~LVG~a~l~a~~  213 (225)
T 1hg3_A          184 GISTGEDVKKAI-ELGTVGVLLASGVTKAKD  213 (225)
T ss_dssp             SCCSHHHHHHHH-HTTCSEEEESHHHHTCSS
T ss_pred             CCCcHHHHHHHH-hCCCCEEEeCHHHHCCcC
Confidence            689999987765 679999999999986543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	101
d1vhna_	305	Putative flavin oxidoreducatase TM0096 {Thermotoga	99.89
d1ep3a_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	99.01
d1y0ea_	222	Putative N-acetylmannosamine-6-phosphate 2-epimera	98.02
d1djqa1	340	Trimethylamine dehydrogenase, N-terminal domain {M	97.73
d1z41a1	337	NADPH dehydrogenase NamA {Bacillus subtilis [TaxId	97.68
d1ps9a1	330	2,4-dienoyl-CoA reductase, N-terminal domain {Esch	97.57
d1yxya1	230	Putative N-acetylmannosamine-6-phosphate 2-epimera	97.53
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	97.33
d1icpa_	364	12-oxophytodienoate reductase (OPR, OYE homolog) {	96.32
d1gwja_	374	Morphinone reductase {Pseudomonas putida [TaxId: 3	96.13
d1vyra_	363	Pentaerythritol tetranirate reductase {Enterobacte	95.66
d1juba_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	95.48
d1vcfa1	310	Isopentenyl-diphosphate delta-isomerase {Thermus t	95.06
d1oyaa_	399	Old yellow enzyme (OYE) {Lager yeast (Saccharomyce	94.49
d1q45a_	380	12-oxophytodienoate reductase (OPR, OYE homolog) {	94.06
d1p0ka_	329	Isopentenyl-diphosphate delta-isomerase {Bacillus	94.05
d1a53a_	247	Indole-3-glycerophosphate synthase, IPGS {Archaeon	93.4
d1f76a_	336	Dihydroorotate dehydrogenase {Escherichia coli [Ta	92.95
d1d3ga_	367	Dihydroorotate dehydrogenase {Human (Homo sapiens)	92.95
d1tv5a1	409	Dihydroorotate dehydrogenase {Plasmodium falciparu	92.2
d2b4ga1	312	Dihydroorotate dehydrogenase {Trypanosoma brucei [	92.03
d1p4ca_	353	Membrane-associated (S)-mandelate dehydrogenase {P	90.35
d1vzwa1	239	Phosphoribosylformimino-5-aminoimidazole carboxami	90.01
d1tb3a1	349	Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI	89.46
d1piia2	254	Indole-3-glycerophosphate synthase, IPGS {Escheric	89.34
d1jvna1	323	Cyclase subunit (or domain) of imidazoleglycerolph	89.21
d1goxa_	359	Glycolate oxidase {Spinach (Spinacia oleracea) [Ta	87.49
d1thfd_	253	Cyclase subunit (or domain) of imidazoleglycerolph	87.33
d1vc4a_	254	Indole-3-glycerophosphate synthase, IPGS {Thermus	87.19
d1vrda1	330	Inosine monophosphate dehydrogenase (IMPDH) {Therm	87.11
d1pvna1	362	Inosine monophosphate dehydrogenase (IMPDH) {Tritr	86.84
d1ka9f_	251	Cyclase subunit (or domain) of imidazoleglycerolph	86.06
d1i4na_	251	Indole-3-glycerophosphate synthase, IPGS {Thermoto	85.82
d1eepa_	388	Inosine monophosphate dehydrogenase (IMPDH) {Lyme	85.79
d1jr1a1	378	Inosine monophosphate dehydrogenase (IMPDH) {Chine	85.57
d1ka9f_	251	Cyclase subunit (or domain) of imidazoleglycerolph	84.82
d1hg3a_	224	Triosephosphate isomerase {Archaeon Pyrococcus woe	84.55
d1zfja1	365	Inosine monophosphate dehydrogenase (IMPDH) {Strep	84.36
d1kbia1	414	Flavocytochrome b2, C-terminal domain {Baker's yea	84.05
d1mo0a_	257	Triosephosphate isomerase {Nematode (Caenorhabditi	83.55
d2cu0a1	368	Inosine monophosphate dehydrogenase (IMPDH) {Pyroc	83.42
d1znna1	254	Pyridoxal biosynthesis lyase PdxS {Bacillus stearo	82.94
d1h5ya_	252	Cyclase subunit (or domain) of imidazoleglycerolph	82.36
d1qo2a_	241	Phosphoribosylformimino-5-aminoimidazole carboxami	81.18
d1vzwa1	239	Phosphoribosylformimino-5-aminoimidazole carboxami	81.14
d1e0ta2	246	Pyruvate kinase, N-terminal domain {Escherichia co	80.8
d1w0ma_	226	Triosephosphate isomerase {Thermoproteus tenax [Ta	80.62
d1o5xa_	246	Triosephosphate isomerase {Plasmodium falciparum [	80.55
d1h5ya_	252	Cyclase subunit (or domain) of imidazoleglycerolph	80.4

>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Putative flavin oxidoreducatase TM0096
species: Thermotoga maritima [TaxId: 2336]

Probab=99.89  E-value=1.3e-24  Score=156.78  Aligned_cols=97  Identities=12%  Similarity=0.169  Sum_probs=80.7

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCCC-----C---CCCHH---HHHHHHHHHHHHhcCCCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPTK-----G---IQDIH---QMIKEYLRYCVDYDNSAP   69 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~~-----~---~~~~~---~~~~~~l~~~~~~~~~~~   69 (101)
                      +++||   ||+|++|+.+++++||||||||||||++|||||.++.     +   ..++.   +++.+|++++.+++++..
T Consensus       182 vi~NG---dI~s~~d~~~~l~~tg~dgVMiGRgal~nP~if~~i~~~l~~~~~~~~~~~e~~~~~~~~~~~~~~~~g~~~  258 (305)
T d1vhna_         182 TFVSG---DIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLRSGKYSEPSREEILRTFERHLELLIKTKGERK  258 (305)
T ss_dssp             EEEES---SCCSHHHHHHHHHHHCCSEEEESGGGTTCTTHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred             hhccc---ccccHHHHHHHHHhcCCCeEehhHHHHHhhhHhhhhhhhhcCCCcccchhHHHHHhHHHHHHHHHHhcCcch
Confidence            35788   9999999999999999999999999999999998751     1   23343   567888888887765533


Q ss_pred             ---cHHHHHHhhhCCCCC-hHHHHHHHhcCChhhh
Q psy4403          70 ---NSKYCVQSMLGSQQE-SPLGKKFLESQTLEQI  100 (101)
Q Consensus        70 ---~~k~~l~~~~~~~~~-~~~~~~i~~~~~~~e~  100 (101)
                         .+|+|+.+|++++++ +++|+.|.+++|++++
T Consensus       259 ~l~~~rkhl~~~~kg~p~ak~~R~~l~~~~~~~el  293 (305)
T d1vhna_         259 AVVEMRKFLAGYTKDLKGARRFREKVMKIEEVQIL  293 (305)
T ss_dssp             HHHHHHTTHHHHTTTCTTHHHHHHHHTTCCCHHHH
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHhCCCHHHH
Confidence               356788999999999 9999999999999886

>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=99.01  E-value=1.1e-10  Score=82.07  Aligned_cols=39  Identities=15%  Similarity=0.164  Sum_probs=35.6

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~   43 (101)
                      +++||   +|+|.+|+.+++ .+|||+||||||++.|||+|.+
T Consensus       244 Iig~G---GI~s~~Da~~~i-~~GAd~V~ig~~~~~~P~i~~~  282 (311)
T d1ep3a_         244 IIGMG---GVANAQDVLEMY-MAGASAVAVGTANFADPFVCPK  282 (311)
T ss_dssp             EEECS---SCCSHHHHHHHH-HHTCSEEEECTHHHHCTTHHHH
T ss_pred             EEEeC---CcCCHHHHHHHH-HcCCCEEEecHHHHcCChHHHH
Confidence            35777   899999999999 4899999999999999999876

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.02  E-value=6.6e-07  Score=59.12  Aligned_cols=35  Identities=6%  Similarity=0.008  Sum_probs=30.2

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCcc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIF   41 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF   41 (101)
                      +++|   .|.|.+|+.++++ .||||||||+ |+.||+-+
T Consensus       179 ia~G---GI~t~~d~~~~~~-~GAdgV~iGs-Ai~rp~~~  213 (222)
T d1y0ea_         179 IAEG---NVITPDMYKRVMD-LGVHCSVVGG-AITRPKEI  213 (222)
T ss_dssp             EEES---SCCSHHHHHHHHH-TTCSEEEECH-HHHCHHHH
T ss_pred             EEeC---CCCCHHHHHHHHH-cCCCEEEEch-hhcCHHHH
Confidence            5677   7999999999996 8999999999 66677754

>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Trimethylamine dehydrogenase, N-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.73  E-value=5.2e-06  Score=59.04  Aligned_cols=41  Identities=12%  Similarity=0.053  Sum_probs=36.1

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      |+++|   +|.|++++++++++..||.|++||+++.||.+..++
T Consensus       294 Vi~~G---~i~~~~~a~~~l~~G~aDlV~~gR~~iadPdl~~k~  334 (340)
T d1djqa1         294 VLGVG---RYTDPEKMIEIVTKGYADIIGCARPSIADPFLPQKV  334 (340)
T ss_dssp             EEECS---CCCCHHHHHHHHHTTSCSBEEESHHHHHCTTHHHHH
T ss_pred             EEEEC---CCCCHHHHHHHHHCCCccchhhHHHHHHCccHHHHH
Confidence            35677   899999999999988899999999999999987653

>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: NADPH dehydrogenase NamA
species: Bacillus subtilis [TaxId: 1423]

Probab=97.68  E-value=7.4e-06  Score=58.30  Aligned_cols=40  Identities=15%  Similarity=0.089  Sum_probs=35.8

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      +++|   .|.|++++++++++..||.|++||++++||.+...+
T Consensus       280 i~~G---~i~~~~~ae~~l~~g~~D~V~~gR~~iadPd~~~k~  319 (337)
T d1z41a1         280 GAVG---MITDGSMAEEILQNGRADLIFIGRELLRDPFFARTA  319 (337)
T ss_dssp             EECS---SCCSHHHHHHHHHTTSCSEEEECHHHHHCTTHHHHH
T ss_pred             EEeC---CcCCHHHHHHHHHCCCcceehhhHHHHhCchHHHHH
Confidence            4566   899999999999988899999999999999987653

>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 2,4-dienoyl-CoA reductase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.57  E-value=1.5e-05  Score=56.52  Aligned_cols=40  Identities=18%  Similarity=0.120  Sum_probs=35.7

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      +++|   .|.|++++++++++..||.|++||++|+||++...+
T Consensus       284 i~~G---~i~~~~~ae~~l~~g~~D~V~~gR~~iadP~~~~k~  323 (330)
T d1ps9a1         284 VTTN---RINDPQVADDILSRGDADMVSMARPFLADAELLSKA  323 (330)
T ss_dssp             EECS---SCCSHHHHHHHHHTTSCSEEEESTHHHHCTTHHHHH
T ss_pred             EEeC---CCCCHHHHHHHHHCCCcchhHhhHHHHhChhHHHHH
Confidence            4566   899999999999988899999999999999987653

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.53  E-value=1.3e-05  Score=53.07  Aligned_cols=29  Identities=14%  Similarity=0.160  Sum_probs=25.8

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAA   34 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgA   34 (101)
                      +++|   +|.|++|+.++++ .|||+||||++.
T Consensus       187 ia~G---GI~t~~d~~~al~-~GAd~V~vGsAi  215 (230)
T d1yxya1         187 IAEG---KIHSPEEAKKIND-LGVAGIVVGGAI  215 (230)
T ss_dssp             EEES---CCCSHHHHHHHHT-TCCSEEEECHHH
T ss_pred             EEeC---CCCCHHHHHHHHH-cCCCEEEEChhh
Confidence            5677   8999999999995 899999999964

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.33  E-value=4.6e-05  Score=53.10  Aligned_cols=39  Identities=21%  Similarity=0.278  Sum_probs=32.5

Q ss_pred             CccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC-CCccCC
Q psy4403           1 MDPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN-CSIFSP   43 (101)
Q Consensus         1 ~~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n-P~iF~~   43 (101)
                      ++++|   .|.|.+|+.+++. .|||+|||+++++.+ |.++.+
T Consensus       258 Ii~~G---GI~~~~d~~~~l~-aGA~~Vqv~ta~~~~G~~~i~~  297 (312)
T d1gtea2         258 ILATG---GIDSAESGLQFLH-SGASVLQVCSAVQNQDFTVIQD  297 (312)
T ss_dssp             EEEES---SCCSHHHHHHHHH-TTCSEEEESHHHHTSCTTHHHH
T ss_pred             EEEEc---CCCCHHHHHHHHH-cCCCeeEECHhhhccChHHHHH
Confidence            35777   7999999999995 899999999999987 555443

>d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 12-oxophytodienoate reductase (OPR, OYE homolog)
species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]

Probab=96.32  E-value=0.00069  Score=48.23  Aligned_cols=35  Identities=14%  Similarity=-0.093  Sum_probs=31.2

Q ss_pred             CCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403          10 IVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus        10 I~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      ..+++++++.+++-+||.|++||+++.||.+-..+
T Consensus       300 ~~~~~~ae~~l~~g~aD~V~~gR~~iadPd~~~k~  334 (364)
T d1icpa_         300 GYDREDGNRALIEDRADLVAYGRLFISNPDLPKRF  334 (364)
T ss_dssp             SCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHH
T ss_pred             CCCHHHHHHHHHcCCCceehhHHHHHHCccHHHHH
Confidence            46899999999998999999999999999986553

>d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Morphinone reductase
species: Pseudomonas putida [TaxId: 303]

Probab=96.13  E-value=0.00096  Score=47.62  Aligned_cols=39  Identities=21%  Similarity=0.100  Sum_probs=33.9

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      ++.|   .+ +++.+++++++-.||-|++||++|+||.+...+
T Consensus       300 i~~G---~i-~~~~ae~~l~~g~aDlV~~gR~~iadPd~~~K~  338 (374)
T d1gwja_         300 IYCG---NY-DAGRAQARLDDNTADAVAFGRPFIANPDLPERF  338 (374)
T ss_dssp             EEES---SC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHH
T ss_pred             EEEC---Cc-CHHHHHHHHHcCCCcEehhhHHHHHCccHHHHH
Confidence            3456   67 899999999988899999999999999987664

>d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Pentaerythritol tetranirate reductase
species: Enterobacter cloacae [TaxId: 550]

Probab=95.66  E-value=0.0021  Score=45.61  Aligned_cols=35  Identities=9%  Similarity=-0.038  Sum_probs=31.8

Q ss_pred             CCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403          10 IVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus        10 I~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      +.|++.+++++++-.||-|.+||.+|.||.+...+
T Consensus       301 ~~t~~~ae~~l~~G~~DlV~~gR~liadP~~~~K~  335 (363)
T d1vyra_         301 AYTAEKAEDLIGKGLIDAVAFGRDYIANPDLVARL  335 (363)
T ss_dssp             SCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHH
T ss_pred             CCCHHHHHHHHHCCCcceehhhHHHHHCccHHHHH
Confidence            67999999999987799999999999999987654

>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme A [TaxId: 1358]

Probab=95.48  E-value=0.002  Score=44.27  Aligned_cols=38  Identities=18%  Similarity=0.135  Sum_probs=31.1

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC-CCccCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN-CSIFSP   43 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n-P~iF~~   43 (101)
                      +|.|   .|.|.+|+.+++ ..|||.|+++.+++.+ |.++.+
T Consensus       246 ig~G---GI~s~~Da~~~i-~aGA~~Vql~tal~~~Gp~~i~~  284 (311)
T d1juba_         246 IGTG---GIETGQDAFEHL-LCGATMLQIGTALHKEGPAIFDR  284 (311)
T ss_dssp             EEES---SCCSHHHHHHHH-HHTCSEEEECHHHHHHCTHHHHH
T ss_pred             EecC---CcCCHHHHHHHH-HcCCCceeeeHhhHhcChHHHHH
Confidence            4566   799999999999 6999999999998754 666443

>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Thermus thermophilus [TaxId: 274]

Probab=95.06  E-value=0.0054  Score=41.58  Aligned_cols=31  Identities=19%  Similarity=0.041  Sum_probs=26.4

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD   36 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~   36 (101)
                      ++.|   .|++..|+.+++ ..|||+|||||..+.
T Consensus       238 i~dG---GIr~g~Dv~KAL-alGAdaV~iGr~~l~  268 (310)
T d1vcfa1         238 VASG---GVYTGTDGAKAL-ALGADLLAVARPLLR  268 (310)
T ss_dssp             EEES---SCCSHHHHHHHH-HHTCSEEEECGGGHH
T ss_pred             EeCC---CCCchHHHHHHH-HhCCCEeeEhHHHHH
Confidence            4456   699999999999 599999999997653

>d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Old yellow enzyme (OYE)
species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]

Probab=94.49  E-value=0.0036  Score=44.95  Aligned_cols=40  Identities=8%  Similarity=0.019  Sum_probs=33.1

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      +++|   .|.+.+++.+.+..-+||-|.+||.+|+||.+...+
T Consensus       321 i~~G---~i~~~~~~~~~i~~~~aDlV~~gR~liaDP~l~~K~  360 (399)
T d1oyaa_         321 IRAG---NFALHPEVVREEVKDKRTLIGYGRFFISNPDLVDRL  360 (399)
T ss_dssp             EEES---SCTTCHHHHHHHTTSTTEEEECCHHHHHCTTHHHHH
T ss_pred             EEEC---CCCChHHHHHHHHcCCCeEhHHHHHHHHCccHHHHH
Confidence            4556   798888877777777899999999999999987664

>d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 12-oxophytodienoate reductase (OPR, OYE homolog)
species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]

Probab=94.06  E-value=0.01  Score=42.07  Aligned_cols=35  Identities=14%  Similarity=-0.021  Sum_probs=31.5

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      .+ +++.+++.+++-.||.|.+||.++.||.+...+
T Consensus       315 g~-~~~~ae~~l~~G~~DlV~~gR~liaDPdlv~K~  349 (380)
T d1q45a_         315 GF-NKELGMQAVQQGDADLVSYGRLFIANPDLVSRF  349 (380)
T ss_dssp             SC-CHHHHHHHHHTTSCSEEEESHHHHHCTTHHHHH
T ss_pred             CC-CHHHHHHHHHcCCccchhhhHHHHHCccHHHHH
Confidence            55 799999999988899999999999999998764

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

Probab=94.05  E-value=0.011  Score=40.71  Aligned_cols=30  Identities=23%  Similarity=0.046  Sum_probs=25.3

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQ   35 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl   35 (101)
                      ++-|   .|++..|+.+++ ..|+|+|||||..+
T Consensus       235 iadG---GIr~g~Dv~KAl-alGAdaV~iGr~~l  264 (329)
T d1p0ka_         235 IASG---GLQDALDVAKAI-ALGASCTGMAGHFL  264 (329)
T ss_dssp             EEES---SCCSHHHHHHHH-HTTCSEEEECHHHH
T ss_pred             EEcC---CcccHHHHHHHH-HcCCCchhccHHHH
Confidence            4455   699999999999 58999999999543

>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.40  E-value=0.026  Score=38.13  Aligned_cols=30  Identities=13%  Similarity=0.204  Sum_probs=27.1

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCS   39 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~   39 (101)
                      .|.+++|++++. ..|+|||.||-++|.+|.
T Consensus       211 GI~t~~dv~~l~-~~G~davLIGeaLmk~~d  240 (247)
T d1a53a_         211 GISERNEIEELR-KLGVNAFLIGSSLMRNPE  240 (247)
T ss_dssp             CCCCHHHHHHHH-HTTCCEEEECHHHHHCTT
T ss_pred             CCCCHHHHHHHH-HCCCCEEEECHHHcCCCc
Confidence            499999999876 689999999999999884

>d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=92.95  E-value=0.0063  Score=42.34  Aligned_cols=35  Identities=14%  Similarity=-0.075  Sum_probs=30.7

Q ss_pred             CCCCCHHHHHHHHHhcCCCeeeeeccc-ccCCCccCC
Q psy4403           8 KEIVDYGGILKFKADTNASSVMIARAA-QDNCSIFSP   43 (101)
Q Consensus         8 GDI~s~~d~~~~~~~tg~dgvMigRgA-l~nP~iF~~   43 (101)
                      |.|.|.+|+.+++ .-||+.|.|+-|. ...|.++.+
T Consensus       296 GGI~s~~Da~e~i-~aGAsaVQv~Tal~~~Gp~ii~~  331 (336)
T d1f76a_         296 GGIDSVIAAREKI-AAGASLVQIYSGFIFKGPPLIKE  331 (336)
T ss_dssp             SSCCSHHHHHHHH-HHTCSEEEESHHHHHHCHHHHHH
T ss_pred             CCCCCHHHHHHHH-HcCCcHHHHHHHHHhcChHHHHH
Confidence            3799999999999 5899999999997 468988765

>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.95  E-value=0.021  Score=40.03  Aligned_cols=34  Identities=15%  Similarity=-0.011  Sum_probs=29.9

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccc-cCCCccCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQ-DNCSIFSP   43 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl-~nP~iF~~   43 (101)
                      .|.|.+|+.+++ ..||+.|+|+-+++ ..|.++.+
T Consensus       306 GI~s~~Da~e~i-~aGAs~VQi~Ta~~~~Gp~ii~~  340 (367)
T d1d3ga_         306 GVSSGQDALEKI-RAGASLVQLYTALTFWGPPVVGK  340 (367)
T ss_dssp             SCCSHHHHHHHH-HHTCSEEEESHHHHHHCTHHHHH
T ss_pred             CCCCHHHHHHHH-HcCCCHHHhhHHHHhcCcHHHHH
Confidence            799999999999 58999999999974 67888665

>d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Plasmodium falciparum [TaxId: 5833]

Probab=92.20  E-value=0.019  Score=41.06  Aligned_cols=35  Identities=14%  Similarity=-0.108  Sum_probs=29.9

Q ss_pred             CCCCCHHHHHHHHHhcCCCeeeeecccccC-CCccCC
Q psy4403           8 KEIVDYGGILKFKADTNASSVMIARAAQDN-CSIFSP   43 (101)
Q Consensus         8 GDI~s~~d~~~~~~~tg~dgvMigRgAl~n-P~iF~~   43 (101)
                      |.|.|.+|+.+++. .||+.|.|+-|.+-+ |.++.+
T Consensus       349 GGI~s~~Da~e~i~-AGAs~VQv~T~li~~Gp~~v~~  384 (409)
T d1tv5a1         349 GGIFSGLDALEKIE-AGASVCQLYSCLVFNGMKSAVQ  384 (409)
T ss_dssp             SSCCSHHHHHHHHH-TTEEEEEESHHHHHHGGGHHHH
T ss_pred             CCCCCHHHHHHHHH-cCCCHHhhhhHHHhcChHHHHH
Confidence            37999999999995 699999999998644 888765

>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=92.03  E-value=0.018  Score=39.42  Aligned_cols=38  Identities=21%  Similarity=0.124  Sum_probs=31.4

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC-CCccCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN-CSIFSP   43 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n-P~iF~~   43 (101)
                      ++.|   -|.|.+|+.+++ ..||+.|+++-+++-+ |.++.+
T Consensus       246 ig~G---GI~s~~Da~e~i-~aGAs~Vqv~Tal~~~Gp~~i~~  284 (312)
T d2b4ga1         246 FGCG---GVYSGEEAFLHI-LAGASMVQVGTALHDEGPIIFAR  284 (312)
T ss_dssp             EEES---SCCSHHHHHHHH-HHTEEEEEESHHHHHHCTTHHHH
T ss_pred             eecC---CcCCHHHHHHHH-HcCCChheeehhhHhcCcHHHHH
Confidence            3455   799999999999 5899999999998754 777664

>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Membrane-associated (S)-mandelate dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=90.35  E-value=0.058  Score=37.13  Aligned_cols=31  Identities=23%  Similarity=0.124  Sum_probs=26.7

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD   36 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~   36 (101)
                      ++.|   .|++.-|+.+++. .|+|.|++||..|.
T Consensus       279 iasG---GIR~G~Dv~KALa-LGAd~vgigrp~L~  309 (353)
T d1p4ca_         279 LIDS---GFRRGSDIVKALA-LGAEAVLLGRATLY  309 (353)
T ss_dssp             EECS---SCCSHHHHHHHHH-TTCSCEEESHHHHH
T ss_pred             eecC---CcCchHHHHHHHH-cCCCEEEEcHHHHH
Confidence            4555   7999999999995 99999999997764

>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Streptomyces coelicolor [TaxId: 1902]

Probab=90.01  E-value=0.04  Score=36.35  Aligned_cols=31  Identities=10%  Similarity=0.205  Sum_probs=24.9

Q ss_pred             ccCCCCCCCCCHHHHHHHHH--hcCCCeeeeecccc
Q psy4403           2 DPSGGSKEIVDYGGILKFKA--DTNASSVMIARAAQ   35 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~--~tg~dgvMigRgAl   35 (101)
                      ++.|   .|.|.+|++++.+  ..|++||.+|++..
T Consensus       193 i~sG---Gv~s~~Di~~l~~l~~~g~~gvivg~al~  225 (239)
T d1vzwa1         193 VASG---GVSSLDDLRAIAGLVPAGVEGAIVGKALY  225 (239)
T ss_dssp             EEES---CCCSHHHHHHHHTTGGGTEEEEEECHHHH
T ss_pred             EEEC---CCCCHHHHHHHHhhhhCCccEeeEhHHHH
Confidence            3455   7999999999854  47999999999743

>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.46  E-value=0.066  Score=37.21  Aligned_cols=31  Identities=19%  Similarity=0.134  Sum_probs=26.8

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD   36 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~   36 (101)
                      ++.|   .|++..|+.+.+. -|++.|+|||..|.
T Consensus       276 iadG---GIR~G~Dv~KALA-LGA~~V~igrp~L~  306 (349)
T d1tb3a1         276 YMDG---GVRTGTDVLKALA-LGARCIFLGRPILW  306 (349)
T ss_dssp             EEES---SCCSHHHHHHHHH-TTCSCEEESHHHHH
T ss_pred             Eecc---CcCcHHHHHHHHH-cCCCEEEEChHHHH
Confidence            4556   7999999999994 89999999997764

>d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Escherichia coli [TaxId: 562]

Probab=89.34  E-value=0.11  Score=35.09  Aligned_cols=29  Identities=17%  Similarity=0.266  Sum_probs=25.0

Q ss_pred             CCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403          10 IVDYGGILKFKADTNASSVMIARAAQDNCSI   40 (101)
Q Consensus        10 I~s~~d~~~~~~~tg~dgvMigRgAl~nP~i   40 (101)
                      |.+++|++++ + .|+|+|.||.++|..|..
T Consensus       217 I~~~~d~~~l-~-~g~davLiGeslm~~~dp  245 (254)
T d1piia2         217 INTYAQVREL-S-HFANGFLIGSALMAHDDL  245 (254)
T ss_dssp             CCCHHHHHHH-T-TTCSEEEECHHHHTCSCH
T ss_pred             CCCHHHHHHH-H-cCCCEEEEChHHhCCCCH
Confidence            9999999776 4 499999999999987753

>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]

Probab=89.21  E-value=0.1  Score=36.31  Aligned_cols=30  Identities=13%  Similarity=-0.190  Sum_probs=26.8

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAA   34 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgA   34 (101)
                      +++|   .+.+.+|+.++++.++++||.+|+..
T Consensus       268 IasG---Gi~s~~di~~ll~~~~v~gv~~gs~~  297 (323)
T d1jvna1         268 IASS---GAGVPEHFEEAFLKTRADACLGAGMF  297 (323)
T ss_dssp             EECS---CCCSHHHHHHHHHHSCCSEEEESHHH
T ss_pred             EEEC---CCCCHHHHHHHHHhCCCeEEEEhhHH
Confidence            4566   79999999999999999999999875

>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Glycolate oxidase
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=87.49  E-value=0.11  Score=35.92  Aligned_cols=35  Identities=20%  Similarity=0.125  Sum_probs=29.1

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNCSI   40 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i   40 (101)
                      ++.|   .|++.-|+.+.+. .|||.|+|||..|.-+..
T Consensus       283 iadG---GIR~G~Di~KALa-LGAd~vgigrp~L~~la~  317 (359)
T d1goxa_         283 FLDG---GVRRGTDVFKALA-LGAAGVFIGRPVVFSLAA  317 (359)
T ss_dssp             EEES---SCCSHHHHHHHHH-HTCSEEEECHHHHHHHHH
T ss_pred             eecc---CcCcHHHHHHHHH-cCCCEEEEcHHHHHHHHh
Confidence            4455   7999999999995 899999999988865554

>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=87.33  E-value=0.084  Score=35.07  Aligned_cols=35  Identities=26%  Similarity=0.270  Sum_probs=31.6

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      .|++.++++++++ .||+-|.|+..++.||.++.++
T Consensus        82 GIr~~e~i~~~l~-~Ga~kviigs~~~~n~~~l~~~  116 (253)
T d1thfd_          82 GIHDFETASELIL-RGADKVSINTAAVENPSLITQI  116 (253)
T ss_dssp             SCCSHHHHHHHHH-TTCSEEEESHHHHHCTHHHHHH
T ss_pred             ccccchhhhhHHh-cCCCEEEEChHHhhChHHHHHH
Confidence            6999999999995 7999999999999999887664

>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermus thermophilus [TaxId: 274]

Probab=87.19  E-value=0.11  Score=35.05  Aligned_cols=30  Identities=7%  Similarity=0.002  Sum_probs=25.3

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCc
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSI   40 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~i   40 (101)
                      .|.|++|+.++ + .|+|||.||.++|.+|..
T Consensus       216 GI~~~~dv~~l-~-~g~davLIGesLm~~~d~  245 (254)
T d1vc4a_         216 GYSRKEELKAL-E-GLFDAVLIGTSLMRAPDL  245 (254)
T ss_dssp             CCCSHHHHHTT-T-TTCSEEEECHHHHTSSCH
T ss_pred             CCCCHHHHHHH-H-cCCCEEEEChhhcCCCCH
Confidence            39999999765 4 599999999999988763

>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=87.11  E-value=0.16  Score=35.26  Aligned_cols=32  Identities=31%  Similarity=0.293  Sum_probs=27.0

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDN   37 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~n   37 (101)
                      +|-|   .|.+..|+.+.+. .|+|+||+|.-..+-
T Consensus       205 IAdG---Gi~~~gdiakAla-~GAd~Vm~Gs~fa~~  236 (330)
T d1vrda1         205 IADG---GIRYSGDIVKALA-AGAESVMVGSIFAGT  236 (330)
T ss_dssp             EEES---CCCSHHHHHHHHH-TTCSEEEESHHHHTB
T ss_pred             EecC---CcccCCchheeee-ccCceeeecchheee
Confidence            5667   7999999999994 899999999866553

>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Tritrichomonas foetus [TaxId: 5724]

Probab=86.84  E-value=0.17  Score=35.56  Aligned_cols=27  Identities=22%  Similarity=0.121  Sum_probs=23.6

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeec
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIAR   32 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigR   32 (101)
                      +|-|   .|++..|+.+.+ ..|+|.||+|.
T Consensus       224 iaDG---Gi~~~gdi~KAl-a~GAd~VM~G~  250 (362)
T d1pvna1         224 CSDG---GIVYDYHMTLAL-AMGADFIMLGR  250 (362)
T ss_dssp             EEES---CCCSHHHHHHHH-HTTCSEEEESH
T ss_pred             eecc---ccCcccceeEEE-EEeccceeehh
Confidence            5667   799999999999 48999999975

>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=86.06  E-value=0.1  Score=34.63  Aligned_cols=35  Identities=14%  Similarity=0.078  Sum_probs=31.6

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      .|+|.+++++++ ..||+-|.|+-.++.||.++.++
T Consensus        82 GIrs~e~~~~ll-~~Ga~kVii~s~~~~n~~~i~~~  116 (251)
T d1ka9f_          82 GVRSLEDARKLL-LSGADKVSVNSAAVRRPELIREL  116 (251)
T ss_dssp             SCCSHHHHHHHH-HHTCSEEEECHHHHHCTHHHHHH
T ss_pred             cccCHHHHHHHH-HcCCCEEEECchhhhCHHHHHHH
Confidence            699999999998 48999999999999999987653

>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermotoga maritima [TaxId: 2336]

Probab=85.82  E-value=0.14  Score=34.54  Aligned_cols=28  Identities=11%  Similarity=0.163  Sum_probs=24.3

Q ss_pred             CCCHHHHHHHHHhcCCCeeeeecccccCCC
Q psy4403          10 IVDYGGILKFKADTNASSVMIARAAQDNCS   39 (101)
Q Consensus        10 I~s~~d~~~~~~~tg~dgvMigRgAl~nP~   39 (101)
                      |.+++|++.+ + .|+|+|.||.++|..|.
T Consensus       211 I~~~~d~~~l-~-~G~davLIG~sLm~~~~  238 (251)
T d1i4na_         211 IKDPRELKDL-R-GKVNAVLVGTSIMKAEN  238 (251)
T ss_dssp             CCCGGGHHHH-T-TTCSEEEECHHHHHCSS
T ss_pred             CCCHHHHHHH-H-hCCCEEEEChHHhCCCC
Confidence            9999999776 4 59999999999998664

>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

Probab=85.79  E-value=0.18  Score=35.77  Aligned_cols=31  Identities=29%  Similarity=0.254  Sum_probs=26.0

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD   36 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~   36 (101)
                      +|-|   .|.+..|+.+.+ ..|+|.||+|.-.-+
T Consensus       258 IADG---Gi~~~Gdi~KAl-a~GAd~VMlG~~lAg  288 (388)
T d1eepa_         258 IADG---GIRFSGDVVKAI-AAGADSVMIGNLFAG  288 (388)
T ss_dssp             EEES---CCCSHHHHHHHH-HHTCSEEEECHHHHT
T ss_pred             Eecc---ccCcCCceeeeE-Eeccceeecchhhhc
Confidence            5667   799999999999 489999999985443

>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=85.57  E-value=0.21  Score=35.29  Aligned_cols=31  Identities=29%  Similarity=0.278  Sum_probs=26.2

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD   36 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~   36 (101)
                      +|-|   .|.+..|+.+.+ ..|+|+||+|.-..+
T Consensus       226 IADG---Gi~~~gdiakAl-a~GAd~VMmGs~fAg  256 (378)
T d1jr1a1         226 IADG---GIQNVGHIAKAL-ALGASTVMMGSLLAA  256 (378)
T ss_dssp             EEES---CCCSHHHHHHHH-HTTCSEEEESTTTTT
T ss_pred             eccc---ccccCCceeeEE-Eeecceeeecceeee
Confidence            5667   799999999999 489999999975553

>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=84.82  E-value=0.23  Score=32.73  Aligned_cols=25  Identities=12%  Similarity=-0.003  Sum_probs=22.5

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeeccc
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAA   34 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgA   34 (101)
                      .|.+.+|+.++.+ .|++||++|++.
T Consensus       203 Gv~~~~dl~~l~~-~g~~gviig~al  227 (251)
T d1ka9f_         203 GAGRMEHFLEAFQ-AGAEAALAASVF  227 (251)
T ss_dssp             CCCSHHHHHHHHH-TTCSEEEESHHH
T ss_pred             CCCCHHHHHHHHH-CCCCEEEEhHHH
Confidence            7999999999986 799999999863

>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Archaeon Pyrococcus woesei [TaxId: 2262]

Probab=84.55  E-value=0.36  Score=31.20  Aligned_cols=28  Identities=14%  Similarity=0.102  Sum_probs=24.6

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDN   37 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~n   37 (101)
                      .|.+.+|+..+.+ .|+|||.+|.+.+.-
T Consensus       183 sV~~~n~~~~~~~-~g~dGvLVGsAsl~a  210 (224)
T d1hg3a_         183 GISTGEDVKKAIE-LGTVGVLLASGVTKA  210 (224)
T ss_dssp             SCCSHHHHHHHHH-TTCSEEEESHHHHTC
T ss_pred             CcCCHHHHHHHHh-CCCCEEEEcceeecC
Confidence            7999999988876 699999999998863

>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=84.36  E-value=0.26  Score=34.68  Aligned_cols=31  Identities=23%  Similarity=0.245  Sum_probs=25.8

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeeccccc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQD   36 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~   36 (101)
                      +|-|   .|.+..|+.+.+ ..|+|.||+|.-.-+
T Consensus       214 IADG---Gi~~~GDi~KAl-a~GAd~VMlG~~lAg  244 (365)
T d1zfja1         214 IADG---GIKYSGDIVKAL-AAGGNAVMLGSMFAG  244 (365)
T ss_dssp             EEES---CCCSHHHHHHHH-HTTCSEEEESTTTTT
T ss_pred             EecC---CcCcchhhhhhh-hccCCEEEecchhcc
Confidence            5667   799999999999 489999999974443

>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Flavocytochrome b2, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.05  E-value=0.21  Score=35.40  Aligned_cols=33  Identities=18%  Similarity=0.039  Sum_probs=27.4

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecccccCC
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARAAQDNC   38 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRgAl~nP   38 (101)
                      ++.|   .|++.-|+.+++. .|+|.|+|||-.|.-.
T Consensus       310 iadG---GIR~G~DVaKALA-LGAdaVgigrp~L~~l  342 (414)
T d1kbia1         310 FVDG---GVRRGTDVLKALC-LGAKGVGLGRPFLYAN  342 (414)
T ss_dssp             EEES---SCCSHHHHHHHHH-HTCSEEEECHHHHHHH
T ss_pred             EecC---CcCcHHHHHHHHH-cCCCEEEEcHHHHHHH
Confidence            4455   7999999999995 8999999999776543

>d1mo0a_ c.1.1.1 (A:) Triosephosphate isomerase {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=83.55  E-value=0.13  Score=34.65  Aligned_cols=31  Identities=10%  Similarity=0.166  Sum_probs=25.6

Q ss_pred             CCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403          11 VDYGGILKFKADTNASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus        11 ~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~   43 (101)
                      .+++.+.++++..++||++||++.| ||- |.+
T Consensus       219 V~~~N~~~i~~~~~vDG~LVGgASL-~~~-F~~  249 (257)
T d1mo0a_         219 VTADNAAELGKKPDIDGFLVGGASL-KPD-FVK  249 (257)
T ss_dssp             CCTTTHHHHTTSTTCCEEEESGGGG-STH-HHH
T ss_pred             cCHHHHHHHhcCCCCCeEEeehHhC-ChH-HHH
Confidence            5667788888888999999999999 486 754

>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=83.42  E-value=0.31  Score=34.25  Aligned_cols=28  Identities=29%  Similarity=0.313  Sum_probs=24.6

Q ss_pred             ccCCCCCCCCCHHHHHHHHHhcCCCeeeeecc
Q psy4403           2 DPSGGSKEIVDYGGILKFKADTNASSVMIARA   33 (101)
Q Consensus         2 ~aNGgsGDI~s~~d~~~~~~~tg~dgvMigRg   33 (101)
                      +|-|   .|.+..|+.+.+ ..|+|.||+|.-
T Consensus       220 iADG---Gi~~~Gdi~KAl-a~GAd~VMlG~~  247 (368)
T d2cu0a1         220 IADG---GIRYSGDIVKAI-AAGADAVMLGNL  247 (368)
T ss_dssp             EEES---CCCSHHHHHHHH-HTTCSEEEESTT
T ss_pred             EecC---CCCcCChhheee-eeccceeeccch
Confidence            5667   799999999999 589999999975

>d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: PdxS-like
domain: Pyridoxal biosynthesis lyase PdxS
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=82.94  E-value=0.5  Score=31.67  Aligned_cols=25  Identities=8%  Similarity=0.093  Sum_probs=22.3

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeeccc
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAA   34 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgA   34 (101)
                      .|-++.|+..++ +.|||||+++-|.
T Consensus       197 Gi~tpadaa~~M-elG~dgV~v~s~I  221 (254)
T d1znna1         197 GVTTPADAALMM-HLGADGVFVGSGI  221 (254)
T ss_dssp             SCCSHHHHHHHH-HTTCSEEEECGGG
T ss_pred             CCCChhhHHHHH-HcCCCEEEEcchh
Confidence            599999999998 4899999998874

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=82.36  E-value=0.42  Score=31.54  Aligned_cols=26  Identities=15%  Similarity=0.050  Sum_probs=22.2

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccc
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQ   35 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl   35 (101)
                      .|.+.+|++++.+ .|++||.+|....
T Consensus       205 Gv~~~~di~~l~~-~g~~gv~~gs~l~  230 (252)
T d1h5ya_         205 GAGRVEHFYEAAA-AGADAVLAASLFH  230 (252)
T ss_dssp             CCCSHHHHHHHHH-TTCSEEEESHHHH
T ss_pred             CCCCHHHHHHHHH-CCCCEEEEhhHHH
Confidence            7999999999765 8999999997653

>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Thermotoga maritima [TaxId: 2336]

Probab=81.18  E-value=0.5  Score=30.78  Aligned_cols=34  Identities=9%  Similarity=0.088  Sum_probs=31.0

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSP   43 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~   43 (101)
                      .|.|.+|++++++ +|++-|.++-.+..||.+...
T Consensus        81 GI~s~~~~~~~~~-~Ga~kVvi~s~~~~~~~~~~~  114 (241)
T d1qo2a_          81 GIRSLDYAEKLRK-LGYRRQIVSSKVLEDPSFLKS  114 (241)
T ss_dssp             SCCSHHHHHHHHH-TTCCEEEECHHHHHCTTHHHH
T ss_pred             hhhhhhhhhhccc-cccceEecCcccccCchhhhh
Confidence            6999999999995 899999999999999997654

>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Streptomyces coelicolor [TaxId: 1902]

Probab=81.14  E-value=0.29  Score=31.91  Aligned_cols=35  Identities=20%  Similarity=0.122  Sum_probs=32.0

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      .|+|.+|++++++ .|++-|.++..++.||.++.++
T Consensus        82 GIrs~~~~~~ll~-~Ga~kVvi~s~~~~~~~~~~~~  116 (239)
T d1vzwa1          82 GIRDDDTLAAALA-TGCTRVNLGTAALETPEWVAKV  116 (239)
T ss_dssp             SCCSHHHHHHHHH-TTCSEEEECHHHHHCHHHHHHH
T ss_pred             ccccchhhhhhhc-cccccchhhHHhhhccccchhh
Confidence            6999999999995 8999999999999999988763

>d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Pyruvate kinase
domain: Pyruvate kinase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.80  E-value=0.23  Score=33.23  Aligned_cols=13  Identities=23%  Similarity=0.414  Sum_probs=11.3

Q ss_pred             CCeeeeecccccC
Q psy4403          25 ASSVMIARAAQDN   37 (101)
Q Consensus        25 ~dgvMigRgAl~n   37 (101)
                      +|||||+||=|+-
T Consensus       139 sDgImIaRGDLg~  151 (246)
T d1e0ta2         139 SDGIMVARGDLGV  151 (246)
T ss_dssp             SSEEEEEHHHHHH
T ss_pred             cceEEEEccchhh
Confidence            5999999998874

>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Thermoproteus tenax [TaxId: 2271]

Probab=80.62  E-value=0.51  Score=30.57  Aligned_cols=32  Identities=16%  Similarity=0.099  Sum_probs=26.2

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCcc
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIF   41 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF   41 (101)
                      .|.+.+|+..+.+ .|+|||.||.+.+.-+.-|
T Consensus       181 gV~~~n~~~~~~~-~g~dGvLVGsA~l~a~d~~  212 (226)
T d1w0ma_         181 GIESGDDVAAALR-LGTRGVLLASAAVKAKDPY  212 (226)
T ss_dssp             SCCSHHHHHHHHH-TTCSEEEECHHHHTCSSHH
T ss_pred             CcCChHHHHHHhc-CCCCEEEechheecCCCHH
Confidence            6999999987775 7999999999999655443

>d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Plasmodium falciparum [TaxId: 5833]

Probab=80.55  E-value=0.36  Score=32.11  Aligned_cols=31  Identities=13%  Similarity=0.170  Sum_probs=25.2

Q ss_pred             CCCHHHHHHHHHhcCCCeeeeecccccCCCccC
Q psy4403          10 IVDYGGILKFKADTNASSVMIARAAQDNCSIFS   42 (101)
Q Consensus        10 I~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~   42 (101)
                      =.+++.+.++++..++||++||++.|. |. |.
T Consensus       209 SV~~~N~~~i~~~~~idG~LVG~ASL~-~~-F~  239 (246)
T d1o5xa_         209 SVNTENCSSLIQQEDIDGFLVGNASLK-ES-FV  239 (246)
T ss_dssp             CCCTTTHHHHHTSTTCCEEEECGGGGS-TT-HH
T ss_pred             CCCHhHHHHHhcCCCCCEEEeecccCC-HH-HH
Confidence            346677888888999999999999995 65 53

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=80.40  E-value=0.52  Score=31.08  Aligned_cols=35  Identities=14%  Similarity=0.089  Sum_probs=31.7

Q ss_pred             CCCCHHHHHHHHHhcCCCeeeeecccccCCCccCCC
Q psy4403           9 EIVDYGGILKFKADTNASSVMIARAAQDNCSIFSPT   44 (101)
Q Consensus         9 DI~s~~d~~~~~~~tg~dgvMigRgAl~nP~iF~~~   44 (101)
                      .|++.+|+++++. .||+-|.++-.++.||.++.++
T Consensus        84 GIr~~e~~~~ll~-~G~~kVii~s~~~~~~~~~~~~  118 (252)
T d1h5ya_          84 GVRSLEDATTLFR-AGADKVSVNTAAVRNPQLVALL  118 (252)
T ss_dssp             SCCSHHHHHHHHH-HTCSEEEESHHHHHCTHHHHHH
T ss_pred             ccchhhhhhhHhh-cCCcEEEecccccCCcchHHHH
Confidence            5999999999984 7999999999999999988664