Psyllid ID: psy4516

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-----
Protein Sequence
MASCDPSNMRELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMSTNRYRYFKPTPKTSWLGLGLILGPIVATMLYIQKTKDDDEHQLRTGQVAYRDRWNKFL
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccEEEEcccEEEc
Coil and Loop (DISEMBL)
mascdpsnmrELFEKKTKMRMALREEFIKQVynphrhatgeggvlfdpAMQRYMTmstnryryfkptpktswlglglilGPIVATMLYIQktkdddehqlRTGQVAYRDRWNKFL
Flexible Loop (DISEMBL)
mascdpsnmrelFEKKTKMRMALREEFIKQvynphrhatgeggvlfdPAMQRYMTMSTNRYRYFKPTPKTSWLGLGLILGPIVATMLYIQKtkdddehqlrtgqvayrDRWNKFL
Low Complexity Region (SEG)
MASCDPSNMRELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMSTNRYRYFKPTPKTSWLGLGLILGPIVATMLYIQKTKDDDEHQLRTGQVAYRDRWNKFL
Disordered region (IsUnstruct)
**********************LREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMSTNRYRYFKPTPKTSWLGLGLILGPIVATMLYIQKT***********************
Disordered Region (DISOPRED)
**********ELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMSTNRYRYFKPTPKTSWLGLGLILGPIVATMLYIQKTKDDDEHQLRTGQVAYRDRWNKFL
Disordered Region (DISEMBL)
********MRELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMSTNRYRYFKPTPKTSWLGLGLILGPIVATMLYIQKTKDDDEHQLRTGQVAYRDRWNKFL
Disordered Region (DISPRO)
***CDPSNMRELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMSTNRYRYFKPTPKTSWLGLGLILGPIVATMLYIQKTKDDDEHQLRTGQVAYRDRWNKFL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MASCDPSNMRELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMSTNRYRYFKPTPKTSWLGLGLILGPIVATMLYIQKTKDDDEHQLRTGQVAYRDRWNKFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	115	2.2.26 [Sep-21-2011]
P48305	129	NADH dehydrogenase [ubiqu	yes	N/A	0.817	0.728	0.31	3e-05
P0CB71	129	NADH dehydrogenase [ubiqu	N/A	N/A	0.756	0.674	0.316	5e-05
P0CB72	129	NADH dehydrogenase [ubiqu	yes	N/A	0.747	0.666	0.282	7e-05
Q0MQD5	129	NADH dehydrogenase [ubiqu	yes	N/A	0.747	0.666	0.282	0.0001
O95168	129	NADH dehydrogenase [ubiqu	yes	N/A	0.747	0.666	0.282	0.0001
Q0MQD4	129	NADH dehydrogenase [ubiqu	N/A	N/A	0.747	0.666	0.282	0.0001

>sp|P48305|NDUB4_BOVIN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 OS=Bos taurus GN=NDUFB4 PE=1 SV=2

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 6/100 (6%)

Query: 7   SNMRELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYM-TMSTNRYRYFK 65
           S  R+   ++  +R  L+ E+  Q Y+P R      GV+ DPA+ R+    S N Y  F+
Sbjct: 27  SETRKAQAERLAIRSRLKREYQLQYYDPSRR-----GVIEDPALVRWTYARSANIYPNFR 81

Query: 66  PTPKTSWLGLGLILGPIVATMLYIQKTKDDDEHQLRTGQV 105
           P  KTS LG    +GP+V      +  +D  E  ++ G++
Sbjct: 82  PNTKTSLLGALFGIGPLVFWYYVFKTDRDRKEKLIQEGKL 121

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
Bos taurus (taxid: 9913)

>sp|P0CB71|NDUB4_PONPY NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 OS=Pongo pygmaeus GN=NDUFB4 PE=2 SV=1

 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 14/101 (13%)

Query: 15  KKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYM-TMSTNRYRYFKPTPKTSWL 73
           ++  +R  L+ E++ Q  +P+R      G++ +PA+ R+    +TN Y  F+PTPK S +
Sbjct: 35  ERLAIRAQLKREYLLQYNDPNRR-----GLIENPALLRWAYARTTNVYPNFRPTPKNSLM 89

Query: 74  GLGLILGPIVATMLYIQKTKDDDEHQL-------RTGQVAY 107
           G     GP++  + YI KT+ D + +L       RT Q++Y
Sbjct: 90  GALYGFGPLI-FIYYIIKTERDRKEKLIQEGKLDRTFQLSY 129

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo pygmaeus (taxid: 9600)

>sp|P0CB72|NDUB4_PONAB NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 OS=Pongo abelii GN=NDUFB4 PE=2 SV=1

 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 50/92 (54%), Gaps = 6/92 (6%)

Query: 15  KKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYM-TMSTNRYRYFKPTPKTSWL 73
           ++  +R  L+ E++ Q  +P+R      G++ +PA+ R+    +TN Y  F+PTPK S +
Sbjct: 35  ERLAIRAQLKREYLLQYNDPNRR-----GLIENPALLRWAYARTTNVYPNFRPTPKNSLM 89

Query: 74  GLGLILGPIVATMLYIQKTKDDDEHQLRTGQV 105
           G     GP++     I+  +D  E  ++ G++
Sbjct: 90  GALYGFGPLIFIYYIIKTERDRKEKLIQEGKL 121

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo abelii (taxid: 9601)

>sp|Q0MQD5|NDUB4_PANTR NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 OS=Pan troglodytes GN=NDUFB4 PE=2 SV=3

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 6/92 (6%)

Query: 15  KKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMST-NRYRYFKPTPKTSWL 73
           ++  +R  L+ E++ Q  +P+R      G++ +PA+ R+    T N Y  F+PTPK S +
Sbjct: 35  ERLAIRAQLKREYLLQYNDPNRR-----GLIENPALLRWAYARTINVYPNFRPTPKNSLM 89

Query: 74  GLGLILGPIVATMLYIQKTKDDDEHQLRTGQV 105
           G     GP++     I+  +D  E  ++ G++
Sbjct: 90  GALCGFGPLIFIYYIIKTERDRKEKLIQEGKL 121

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pan troglodytes (taxid: 9598)

>sp|O95168|NDUB4_HUMAN NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 OS=Homo sapiens GN=NDUFB4 PE=1 SV=3

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 6/92 (6%)

Query: 15  KKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMST-NRYRYFKPTPKTSWL 73
           ++  +R  L+ E++ Q  +P+R      G++ +PA+ R+    T N Y  F+PTPK S +
Sbjct: 35  ERLAIRAQLKREYLLQYNDPNRR-----GLIENPALLRWAYARTINVYPNFRPTPKNSLM 89

Query: 74  GLGLILGPIVATMLYIQKTKDDDEHQLRTGQV 105
           G     GP++     I+  +D  E  ++ G++
Sbjct: 90  GALCGFGPLIFIYYIIKTERDRKEKLIQEGKL 121

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Homo sapiens (taxid: 9606)

>sp|Q0MQD4|NDUB4_GORGO NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4 OS=Gorilla gorilla gorilla GN=NDUFB4 PE=2 SV=3

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 49/92 (53%), Gaps = 6/92 (6%)

Query: 15  KKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMST-NRYRYFKPTPKTSWL 73
           ++  +R  L+ E++ Q  +P+R      G++ +PA+ R+    T N Y  F+PTPK S +
Sbjct: 35  ERLAIRAQLKREYLLQYNDPNRR-----GLIENPALLRWAYARTINVYPNFRPTPKNSLM 89

Query: 74  GLGLILGPIVATMLYIQKTKDDDEHQLRTGQV 105
           G     GP++     I+  +D  E  ++ G++
Sbjct: 90  GALCGFGPLIFIYYIIKTERDRKEKLIQEGKL 121

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gorilla gorilla gorilla (taxid: 9595)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
350535196	120	uncharacterized protein LOC100165200 [Ac	0.904	0.866	0.461	1e-20
195334453	113	GM21569 [Drosophila sechellia] gi|194125	0.947	0.964	0.422	7e-19
20130001	113	CG12859 [Drosophila melanogaster] gi|730	0.921	0.938	0.424	1e-18
195429465	113	GK19634 [Drosophila willistoni] gi|19415	0.921	0.938	0.433	1e-18
195486079	113	GE13609 [Drosophila yakuba] gi|33328857|	0.921	0.938	0.415	2e-18
194882987	113	GG20479 [Drosophila erecta] gi|190658778	0.921	0.938	0.415	3e-18
262401159	81	NADH:ubiquinone dehydrogenase [Scylla pa	0.695	0.987	0.525	4e-18
194756988	113	GF11341 [Drosophila ananassae] gi|190622	0.913	0.929	0.409	2e-17
125808055	113	GA11862 [Drosophila pseudoobscura pseudo	0.878	0.893	0.425	7e-17
242001696	125	protein XAP-5, putative [Ixodes scapular	0.878	0.808	0.390	2e-16

>gi|350535196|ref|NP_001232991.1| uncharacterized protein LOC100165200 [Acyrthosiphon pisum] gi|239789682|dbj|BAH71449.1| ACYPI006161 [Acyrthosiphon pisum]

 Score =  103 bits (257), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/104 (46%), Positives = 71/104 (68%)

Query: 11  ELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMSTNRYRYFKPTPKT 70
           EL  KK ++R A+  E+IK   NP+R+   EGG LFD  +QRYM++   ++ +F+PTPKT
Sbjct: 16  ELIRKKNELRKAVSLEYIKHTSNPYRNIKMEGGTLFDVGIQRYMSLKATQHEFFRPTPKT 75

Query: 71  SWLGLGLILGPIVATMLYIQKTKDDDEHQLRTGQVAYRDRWNKF 114
           S LG+ +I+ P  +   +I+K +D  E+ +RTGQVAY+DR  KF
Sbjct: 76  SLLGVLMIVVPYFSLTYFIKKERDRRENLIRTGQVAYKDRGFKF 119

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195334453|ref|XP_002033892.1| GM21569 [Drosophila sechellia] gi|194125862|gb|EDW47905.1| GM21569 [Drosophila sechellia]

 Score = 97.8 bits (242), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 46/109 (42%), Positives = 68/109 (62%)

Query: 7   SNMRELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMSTNRYRYFKP 66
           S  +E  ++K +  + LR+EF+KQ  NP+RHATGEGG +FD  + R+  M  + Y +FKP
Sbjct: 5   SEEQEFIKRKHEATLKLRQEFLKQSSNPYRHATGEGGTVFDAGLARFQAMRVSNYEHFKP 64

Query: 67  TPKTSWLGLGLILGPIVATMLYIQKTKDDDEHQLRTGQVAYRDRWNKFL 115
           T K+   GL  ++ PI      ++  +D  E + RTGQVAY+DR  KF+
Sbjct: 65  TGKSFRTGLFAVVLPIALYAWALKTERDGREEKYRTGQVAYKDRQFKFI 113

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|20130001|ref|NP_610985.1| CG12859 [Drosophila melanogaster] gi|7303145|gb|AAF58210.1| CG12859 [Drosophila melanogaster] gi|47271208|gb|AAT27274.1| RE22403p [Drosophila melanogaster] gi|220950782|gb|ACL87934.1| CG12859-PA [synthetic construct] gi|220959568|gb|ACL92327.1| CG12859-PA [synthetic construct]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 67/106 (63%)

Query: 10  RELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMSTNRYRYFKPTPK 69
           +E  ++K +  + LR+EF+KQ  NP+RHATGEGG +FD  + R+  M  + Y +FKPT K
Sbjct: 8   QEFIKRKHEATLKLRQEFLKQSSNPYRHATGEGGTVFDAGLARFQAMRVSNYEHFKPTGK 67

Query: 70  TSWLGLGLILGPIVATMLYIQKTKDDDEHQLRTGQVAYRDRWNKFL 115
           +   GL  ++ PI      ++  +D  E + RTGQVAY+DR  KF+
Sbjct: 68  SFRTGLFAVVLPIALYAWALKAERDGREEKYRTGQVAYKDRQFKFI 113

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195429465|ref|XP_002062779.1| GK19634 [Drosophila willistoni] gi|194158864|gb|EDW73765.1| GK19634 [Drosophila willistoni]

 Score = 97.1 bits (240), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 67/106 (63%)

Query: 10  RELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMSTNRYRYFKPTPK 69
           +EL ++K +  + LR EF+KQ  NP RHATGEGG +FD  + R+  M  + + +FKPT K
Sbjct: 8   QELIKRKHEQTLKLRTEFLKQSSNPFRHATGEGGTVFDAGLARFQAMRVSNFEHFKPTGK 67

Query: 70  TSWLGLGLILGPIVATMLYIQKTKDDDEHQLRTGQVAYRDRWNKFL 115
           +   GL  ++ PIV     ++  +D  E + RTGQVAY+DR  KF+
Sbjct: 68  SFRTGLFAVVLPIVVYAWALKSERDGREAKYRTGQVAYKDRQFKFI 113

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195486079|ref|XP_002091351.1| GE13609 [Drosophila yakuba] gi|33328857|gb|AAQ09835.1| CG12859, partial [Drosophila yakuba] gi|194177452|gb|EDW91063.1| GE13609 [Drosophila yakuba]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 67/106 (63%)

Query: 10  RELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMSTNRYRYFKPTPK 69
           +E  ++K +  + +R+EF+KQ  NP+RHATGEGG +FD  + R+  M  + Y +FKPT K
Sbjct: 8   QEFIKRKHEATLKVRQEFLKQSSNPYRHATGEGGTVFDAGLARFQAMRVSNYEHFKPTGK 67

Query: 70  TSWLGLGLILGPIVATMLYIQKTKDDDEHQLRTGQVAYRDRWNKFL 115
           +   GL  ++ PI      ++  +D  E + RTGQVAY+DR  KF+
Sbjct: 68  SFRTGLFAVVLPIALYAWALKAERDGREEKYRTGQVAYKDRQFKFI 113

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194882987|ref|XP_001975591.1| GG20479 [Drosophila erecta] gi|190658778|gb|EDV55991.1| GG20479 [Drosophila erecta]

 Score = 95.5 bits (236), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 67/106 (63%)

Query: 10  RELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMSTNRYRYFKPTPK 69
           +E  ++K +  + +R+EF+KQ  NP+RHATGEGG +FD  + R+  M  + Y +FKPT K
Sbjct: 8   QEFIKRKHEATLKVRQEFLKQSSNPYRHATGEGGTVFDAGLARFQAMRVSNYEHFKPTGK 67

Query: 70  TSWLGLGLILGPIVATMLYIQKTKDDDEHQLRTGQVAYRDRWNKFL 115
           +   GL  ++ PI      ++  +D  E + RTGQVAY+DR  KF+
Sbjct: 68  SFRTGLFAVVLPIALYAWALKAERDGREKKYRTGQVAYKDRQFKFI 113

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|262401159|gb|ACY66482.1| NADH:ubiquinone dehydrogenase [Scylla paramamosain]

 Score = 95.5 bits (236), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 42/80 (52%), Positives = 58/80 (72%)

Query: 35  HRHATGEGGVLFDPAMQRYMTMSTNRYRYFKPTPKTSWLGLGLILGPIVATMLYIQKTKD 94
           +RH +GEGG LFDPA+QR+M+M   +Y +F+PTPK S LG  +I+ PI+   L +++ KD
Sbjct: 1   YRHGSGEGGALFDPALQRFMSMRATQYDFFRPTPKASLLGTLMIVAPILCYGLLLKRDKD 60

Query: 95  DDEHQLRTGQVAYRDRWNKF 114
             E ++RTGQVAY DR  KF
Sbjct: 61  QFEKKIRTGQVAYADREFKF 80

Source: Scylla paramamosain

Species: Scylla paramamosain

Genus: Scylla

Family: Portunidae

Order: Decapoda

Class: Malacostraca

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194756988|ref|XP_001960752.1| GF11341 [Drosophila ananassae] gi|190622050|gb|EDV37574.1| GF11341 [Drosophila ananassae]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/105 (40%), Positives = 64/105 (60%)

Query: 11  ELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMSTNRYRYFKPTPKT 70
           E  ++K +  + LR E++KQ  NP RHATGEGG +FD  + R+  M  + Y +FKPT K+
Sbjct: 9   EFLKRKHEHTLKLRNEYLKQSSNPFRHATGEGGTVFDAGLSRFQAMRVSNYEHFKPTGKS 68

Query: 71  SWLGLGLILGPIVATMLYIQKTKDDDEHQLRTGQVAYRDRWNKFL 115
              GL  ++ PI      ++  +D  E + RTGQV+Y+DR  KF+
Sbjct: 69  FRTGLFAVVLPIALYAWALKAERDSREEKYRTGQVSYKDRQFKFI 113

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125808055|ref|XP_001360620.1| GA11862 [Drosophila pseudoobscura pseudoobscura] gi|195150511|ref|XP_002016194.1| GL11460 [Drosophila persimilis] gi|54635792|gb|EAL25195.1| GA11862 [Drosophila pseudoobscura pseudoobscura] gi|194110041|gb|EDW32084.1| GL11460 [Drosophila persimilis]

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 62/101 (61%)

Query: 15  KKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMSTNRYRYFKPTPKTSWLG 74
           +K +  + LR E++KQ  NP RHATGEGG +FD  + R+  M  + Y +FKPT K+   G
Sbjct: 13  RKHEHTLKLRNEYLKQSSNPFRHATGEGGTVFDAGLARFQAMRVSNYEHFKPTGKSFRTG 72

Query: 75  LGLILGPIVATMLYIQKTKDDDEHQLRTGQVAYRDRWNKFL 115
           L  ++ PI      ++  +D  E + RTGQVAY+DR  KF+
Sbjct: 73  LFAVVLPIAIYAWALKSERDGREEKYRTGQVAYKDRQFKFI 113

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242001696|ref|XP_002435491.1| protein XAP-5, putative [Ixodes scapularis] gi|215498827|gb|EEC08321.1| protein XAP-5, putative [Ixodes scapularis]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 70/105 (66%), Gaps = 4/105 (3%)

Query: 13  FEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMSTNR--YRYFKPTPKT 70
            +++ K+R AL++E+++Q+ +PH+H  GEGG+LFDPA+QR+ +       Y  FKPTPK 
Sbjct: 23  IQERAKLRAALKQEYVRQITDPHKH--GEGGLLFDPAVQRFHSAKAGAQIYETFKPTPKG 80

Query: 71  SWLGLGLILGPIVATMLYIQKTKDDDEHQLRTGQVAYRDRWNKFL 115
           +   LG+ + P+VA    +++ +D+ E + RTG++ Y DR  K +
Sbjct: 81  AARWLGICILPMVAFGYLVKRDRDEFERKCRTGEIKYEDRMFKVM 125

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	115
FB|FBgn0033961	113	CG12859 [Drosophila melanogast	0.921	0.938	0.424	9.2e-20
UNIPROTKB|F1NRG2	130	NDUFB4 "NADH dehydrogenase [ub	0.852	0.753	0.323	2.3e-07
UNIPROTKB|G1K1S9	129	NDUFB4 "NADH dehydrogenase [ub	0.808	0.720	0.336	3.8e-07
UNIPROTKB|P48305	129	NDUFB4 "NADH dehydrogenase [ub	0.808	0.720	0.336	3.8e-07
UNIPROTKB|F1PXL3	128	NDUFB4 "Uncharacterized protei	0.739	0.664	0.326	3.8e-07
UNIPROTKB|I3LPW0	129	NDUFB4 "Uncharacterized protei	0.782	0.697	0.336	3.8e-07
RGD|1596239	129	LOC687864 "similar to NADH deh	0.747	0.666	0.326	4.8e-07
ASPGD|ASPL0000060251	74	AN0630 [Emericella nidulans (t	0.486	0.756	0.379	1.3e-06
RGD|1582944	129	LOC688963 "similar to NADH deh	0.747	0.666	0.315	1.6e-06
UNIPROTKB|O95168	129	NDUFB4 "NADH dehydrogenase [ub	0.765	0.682	0.322	3.4e-06

FB|FBgn0033961 CG12859 [Drosophila melanogaster (taxid:7227)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 45/106 (42%), Positives = 67/106 (63%)

Query:    10 RELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMSTNRYRYFKPTPK 69
             +E  ++K +  + LR+EF+KQ  NP+RHATGEGG +FD  + R+  M  + Y +FKPT K
Sbjct:     8 QEFIKRKHEATLKLRQEFLKQSSNPYRHATGEGGTVFDAGLARFQAMRVSNYEHFKPTGK 67

Query:    70 TSWLGLGLILGPIVATMLYIQKTKDDDEHQLRTGQVAYRDRWNKFL 115
             +   GL  ++ PI      ++  +D  E + RTGQVAY+DR  KF+
Sbjct:    68 SFRTGLFAVVLPIALYAWALKAERDGREEKYRTGQVAYKDRQFKFI 113

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=ISS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|F1NRG2 NDUFB4 "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4" [Gallus gallus (taxid:9031)]

 Score = 118 (46.6 bits), Expect = 2.3e-07, P = 2.3e-07
 Identities = 34/105 (32%), Positives = 55/105 (52%)

Query:     2 ASCDPS-NMRELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMST-N 59
             A+ D S   R    ++  +R  L+ +++ Q+ NP   A     V+ DPA+ R+    T N
Sbjct:    23 ATYDTSLEKRRAEAERLAIRARLKRQYLLQLNNPKPPA-----VIEDPALLRWDYARTHN 77

Query:    60 RYRYFKPTPKTSWLGLGLILGPIVATMLYIQKTKDDDEHQLRTGQ 104
              Y  F+PTPKTS+LG    +GPI+  +   +  +D  E  +R G+
Sbjct:    78 VYPTFRPTPKTSFLGAVFAIGPILFWIAAFKTERDYKEKLIREGK 122

GO:0005739 "mitochondrion" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

UNIPROTKB|G1K1S9 NDUFB4 "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4" [Bos taurus (taxid:9913)]

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 34/101 (33%), Positives = 53/101 (52%)

Query:     7 SNMRELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYM-TMSTNRYRYFK 65
             S  R+   ++  +R  L+ E+  Q Y+P R      GV+ DPA+ R+    S N Y  F+
Sbjct:    27 SETRKAQAERLAIRSRLKREYQLQYYDPSRR-----GVIEDPALVRWTYARSANIYPNFR 81

Query:    66 PTPKTSWLGLGLILGPIVATMLYIQKT-KDDDEHQLRTGQV 105
             P  KTS LG    +GP+V    Y+ KT +D  E  ++ G++
Sbjct:    82 PNTKTSLLGALFGIGPLVF-WYYVFKTDRDRKEKLIQEGKL 121

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|P48305 NDUFB4 "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4" [Bos taurus (taxid:9913)]

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 34/101 (33%), Positives = 53/101 (52%)

Query:     7 SNMRELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYM-TMSTNRYRYFK 65
             S  R+   ++  +R  L+ E+  Q Y+P R      GV+ DPA+ R+    S N Y  F+
Sbjct:    27 SETRKAQAERLAIRSRLKREYQLQYYDPSRR-----GVIEDPALVRWTYARSANIYPNFR 81

Query:    66 PTPKTSWLGLGLILGPIVATMLYIQKT-KDDDEHQLRTGQV 105
             P  KTS LG    +GP+V    Y+ KT +D  E  ++ G++
Sbjct:    82 PNTKTSLLGALFGIGPLVF-WYYVFKTDRDRKEKLIQEGKL 121

GO:0006979 "response to oxidative stress" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

UNIPROTKB|F1PXL3 NDUFB4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 30/92 (32%), Positives = 51/92 (55%)

Query:    15 KKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMSTNRYRYFKPTPKTSWLG 74
             ++  +R  L+ E++ Q  +P R      G++ DPA+ R+    +N Y  F+PTPKTS LG
Sbjct:    35 ERLAIRSRLKREYLLQYNDPSRR-----GLIEDPALIRWTYARSNIYPNFRPTPKTSLLG 89

Query:    75 LGLILGPIVATMLYIQKT-KDDDEHQLRTGQV 105
                 +GP+     Y+ KT +D  E  ++ G++
Sbjct:    90 ALFGIGPLFF-WFYVFKTDRDRKEKLIQEGKL 120

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

UNIPROTKB|I3LPW0 NDUFB4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 33/98 (33%), Positives = 54/98 (55%)

Query:    10 RELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYM-TMSTNRYRYFKPTP 68
             R+   ++  +R  L+ E++ Q  +P+R      GV+ DPA+ R+    S N Y  F+PTP
Sbjct:    30 RKAQAERLAIRSRLKREYLLQYNDPNRL-----GVIEDPALIRWTYARSANIYPNFRPTP 84

Query:    69 KTSWLGLGLILGPIVATMLYIQKT-KDDDEHQLRTGQV 105
             KTS LG    +GP+     Y+ KT +D  E  ++ G++
Sbjct:    85 KTSLLGALFGIGPLFF-WYYVFKTDRDKKEKLIQEGKL 121

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

RGD|1596239 LOC687864 "similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa" [Rattus norvegicus (taxid:10116)]

 Score = 115 (45.5 bits), Expect = 4.8e-07, P = 4.8e-07
 Identities = 30/92 (32%), Positives = 47/92 (51%)

Query:    15 KKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYM-TMSTNRYRYFKPTPKTSWL 73
             ++  +R  L+ E++ Q  NP R    E     DPA+ R+    S N Y  F+PTPK S L
Sbjct:    35 ERMSIRARLKREYVLQYNNPKRQMHIE-----DPALIRWTYARSANVYPNFRPTPKNSLL 89

Query:    74 GLGLILGPIVATMLYIQKTKDDDEHQLRTGQV 105
             G    LGP++     I+  +D  E  ++ G++
Sbjct:    90 GAVAGLGPLIFWYYVIKTDRDKKERLIQEGKL 121

GO:0005739 "mitochondrion" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

ASPGD|ASPL0000060251 AN0630 [Emericella nidulans (taxid:162425)]

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 22/58 (37%), Positives = 39/58 (67%)

Query:    44 VLFDPAMQRYMTMSTNRYRYFKPTPKTSWLGLGLILGPIVATMLYIQKTKDDDEHQLR 101
             ++ DPA+Q+Y  +++NRY+YF+ TP+T+W  L L +  I A++ Y+   K D ++  R
Sbjct:     8 LILDPALQKYYEVNSNRYKYFRWTPRTAWHSL-LYMVLIPASLGYVAY-KSDGKYDFR 63

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

RGD|1582944 LOC688963 "similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 4, 15kDa" [Rattus norvegicus (taxid:10116)]

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 29/92 (31%), Positives = 47/92 (51%)

Query:    15 KKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYM-TMSTNRYRYFKPTPKTSWL 73
             ++  +R  L+ E++ Q  +P R    E     DPA+ R+    S N Y  F+PTPK S L
Sbjct:    35 ERMSIRARLKREYLLQYNDPKRQTHIE-----DPALIRWTYARSANVYPNFRPTPKNSLL 89

Query:    74 GLGLILGPIVATMLYIQKTKDDDEHQLRTGQV 105
             G    LGP++     I+  +D  E  ++ G++
Sbjct:    90 GAVAGLGPLIFWYYVIKTDRDKKERLIQEGKL 121

GO:0005739 "mitochondrion" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

UNIPROTKB|O95168 NDUFB4 "NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 4" [Homo sapiens (taxid:9606)]

 Score = 107 (42.7 bits), Expect = 3.4e-06, P = 3.4e-06
 Identities = 31/96 (32%), Positives = 51/96 (53%)

Query:     6 PSNMRELFEKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMST-NRYRYF 64
             P   R   E+   +R  L+ E++ Q  +P+R      G++ +PA+ R+    T N Y  F
Sbjct:    27 PETRRAQAERLA-IRAQLKREYLLQYNDPNRR-----GLIENPALLRWAYARTINVYPNF 80

Query:    65 KPTPKTSWLGLGLILGPIVATMLYIQKTKDDDEHQL 100
             +PTPK S +G     GP++  + YI KT+ D + +L
Sbjct:    81 RPTPKNSLMGALCGFGPLIF-IYYIIKTERDRKEKL 115

GO:0016021 "integral to membrane" evidence=IEA

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=NAS

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=NAS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA;NAS

GO:0006979 "response to oxidative stress" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P48305	NDUB4_BOVIN	No assigned EC number	0.31	0.8173	0.7286	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	115
pfam07225	125	pfam07225, NDUF_B4, NADH-ubiquinone oxidoreductase	6e-10

>gnl|CDD|219341 pfam07225, NDUF_B4, NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4)

 Score = 52.5 bits (126), Expect = 6e-10
 Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 7/83 (8%)

Query: 14  EKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYM-TMSTNRYRYFKPTPKTSW 72
            ++  +R  L+ E++ Q+ +PHR      G++ DPA+ R+    + N Y  F+PTPKTS 
Sbjct: 30  AERLAIRARLKREYLLQLNDPHRK-----GLIEDPALFRWAYARTMNIYPNFRPTPKTSL 84

Query: 73  LGLGLILGPIVATMLYIQKTKDD 95
           LGL    GP++    Y+ KT  D
Sbjct: 85  LGLLFGFGPLI-FWYYVFKTDRD 106

This family consists of several NADH-ubiquinone oxidoreductase B15 subunit proteins (EC:1.6.5.3). Length = 125

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	115
PF07225	125	NDUF_B4: NADH-ubiquinone oxidoreductase B15 subuni	100.0
PLN02755	71	complex I subunit	99.47

>PF07225 NDUF_B4: NADH-ubiquinone oxidoreductase B15 subunit (NDUFB4); InterPro: IPR009866 NADH:ubiquinone oxidoreductase (complex I) (1

Probab=100.00  E-value=6.8e-45  Score=264.61  Aligned_cols=104  Identities=39%  Similarity=0.689  Sum_probs=98.1

Q ss_pred             CCCChHHHHH-HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCHHHHHHHHhhc-cccccceecCchhhHHHHHHHHH
Q psy4516           4 CDPSNMRELF-EKKTKMRMALREEFIKQVYNPHRHATGEGGVLFDPAMQRYMTMST-NRYRYFKPTPKTSWLGLGLILGP   81 (115)
Q Consensus         4 ~~~~~e~~~~-~~r~~~R~~Lk~eYlkq~~nP~r~~~~e~~l~~DPAL~Rw~~mr~-n~y~~FR~Tprta~~~~~~~vvP   81 (115)
                      -|+|||++.| +||+|+|++||+|||||+||||+.     |+++||||+||++|+. |+|+||||||||++++++++++|
T Consensus        19 Y~~SpE~r~a~~eR~a~Ra~Lk~eYlkq~~nP~~~-----gli~DPAL~Rw~~a~~~~~y~~FRpTPktsllg~~~~v~P   93 (125)
T PF07225_consen   19 YDVSPEERRAQQERAAIRARLKREYLKQYNNPHRK-----GLIFDPALQRWAYARAVNIYEYFRPTPKTSLLGLGFGVVP   93 (125)
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-----CccCChHHHHHHHHHHhCcccccccCchHHHHHHHHHHHH
Confidence            4889888776 999999999999999999999977     8999999999966665 99999999999999999999999


Q ss_pred             HHHHHHHHhcccchhhhhhhhCcccccccccccC
Q psy4516          82 IVATMLYIQKTKDDDEHQLRTGQVAYRDRWNKFL  115 (115)
Q Consensus        82 ~~~~~~v~kt~rd~~e~~~r~G~i~y~dR~fk~~  115 (115)
                      ++++++++|+|||++|++||+|||   ||.||++
T Consensus        94 ~i~~~~~~KtdRD~~E~~~r~G~~---dR~f~~~  124 (125)
T PF07225_consen   94 LIFYYYVLKTDRDRKEKLIRTGKL---DRPFKLS  124 (125)
T ss_pred             HHHHHhhhccchhHHHHHHhcCcc---ceeeccC
Confidence            999999999999999999999999   9999974

6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family contains human NADH-ubiquinone oxidoreductase subunit NDUFB4 and related sequences.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0005739 mitochondrion

>PLN02755 complex I subunit

Probab=99.47  E-value=3.2e-14  Score=94.83  Aligned_cols=51  Identities=12%  Similarity=-0.087  Sum_probs=46.4

Q ss_pred             CCCCCCHHHHHHHHhhccccccceecCchhhHHHHHH-HHHHHHHHHHHhcc
Q psy4516          42 GGVLFDPAMQRYMTMSTNRYRYFKPTPKTSWLGLGLI-LGPIVATMLYIQKT   92 (115)
Q Consensus        42 ~~l~~DPAL~Rw~~mr~n~y~~FR~Tprta~~~~~~~-vvP~~~~~~v~kt~   92 (115)
                      -++..+.-|+.|++||+|+|+||||||||++++++|+ +||+++++.+++.-
T Consensus         5 ~~~~~Nk~iE~~~~~reNrekyFRWT~Rt~~i~~ifgv~VP~liy~giv~eF   56 (71)
T PLN02755          5 MEVNKNKFIEEWGAARENLEFNFRWTRRNLAVVGIFGIAVPILVYKGIVREF   56 (71)
T ss_pred             cccCccHHHHHHHHHHHHHHHheecccchhhhhhhhhhhhhHHhhhhhhhhh
Confidence            3678899999999999999999999999999999999 69998888888654

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00