Psyllid ID: psy4525
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 388 | 2.2.26 [Sep-21-2011] | |||||||
| Q9V3T9 | 466 | NADPH:adrenodoxin oxidore | yes | N/A | 0.953 | 0.793 | 0.475 | 1e-100 | |
| P22570 | 491 | NADPH:adrenodoxin oxidore | yes | N/A | 0.876 | 0.692 | 0.498 | 6e-92 | |
| P08165 | 492 | NADPH:adrenodoxin oxidore | yes | N/A | 0.896 | 0.707 | 0.490 | 3e-91 | |
| P56522 | 494 | NADPH:adrenodoxin oxidore | yes | N/A | 0.878 | 0.690 | 0.481 | 3e-90 | |
| P82861 | 498 | NADPH:adrenodoxin oxidore | N/A | N/A | 0.840 | 0.654 | 0.501 | 3e-90 | |
| Q61578 | 494 | NADPH:adrenodoxin oxidore | yes | N/A | 0.961 | 0.755 | 0.434 | 2e-85 | |
| O59710 | 469 | Probable NADPH:adrenodoxi | yes | N/A | 0.902 | 0.746 | 0.402 | 3e-64 | |
| Q54KG7 | 515 | Probable NADPH:adrenodoxi | yes | N/A | 0.853 | 0.642 | 0.386 | 6e-58 | |
| O32886 | 456 | NADPH-ferredoxin reductas | yes | N/A | 0.814 | 0.692 | 0.389 | 7e-58 | |
| O05783 | 456 | NADPH-ferredoxin reductas | yes | N/A | 0.827 | 0.703 | 0.379 | 2e-57 |
| >sp|Q9V3T9|ADRO_DROME NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Drosophila melanogaster GN=dare PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 366 bits (939), Expect = e-100, Method: Compositional matrix adjust.
Identities = 207/435 (47%), Positives = 267/435 (61%), Gaps = 65/435 (14%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKT 75
+CIVG+GPAGFY AQ ILK L VD+ EKLPVPFGLVR+GVAPDHPEVKNVINTFTKT
Sbjct: 32 ICIVGAGPAGFYAAQLILKQLDNCVVDVVEKLPVPFGLVRFGVAPDHPEVKNVINTFTKT 91
Query: 76 GDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVG 135
++PR+ ++GNI LG D+SL +L + YHAV+LTYGAD D++L + E N+ISAR FV
Sbjct: 92 AEHPRLRYFGNISLGTDVSLRELRDRYHAVLLTYGADQDRQLELENEQLDNVISARKFVA 151
Query: 136 WYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSR 195
WYNGLP +L L + TI+GQGNVA+DVAR+LLSP+D LK+TD TE++LE LS S+
Sbjct: 152 WYNGLPGAENLAPDLSGRDVTIVGQGNVAVDVARMLLSPLDALKTTDTTEYALEALSCSQ 211
Query: 196 IKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTEL 255
++ V+LVGRRG LQ AFTIKE REM KLP+V T +R E G+ L RPRKRLTEL
Sbjct: 212 VERVHLVGRRGPLQAAFTIKELREMLKLPNVDTRWRTEDFSGIDMQLDKLQRPRKRLTEL 271
Query: 256 ILKTSNPDESKSNCSKYFRPIFLRSP-------TEF---KLNDNGAI------------- 292
+LK S ++ + + SK F PIFLR+P EF +L A+
Sbjct: 272 MLK-SLKEQGRISGSKQFLPIFLRAPKAIAPGEMEFSVTELQQEAAVPTSSTERLPSHLI 330
Query: 293 ------------TGINFANQQALVTEDTELI----------------------PSGIAFR 318
TGINF ++ V I P+G+
Sbjct: 331 LRSIGYKSSCVDTGINFDTRRGRVHNINGRILKDDATGEVDPGLYVAGWLGTGPTGVIVT 390
Query: 319 SIGYQ---SRCVDSDIPFNE-KSCTVIP---KEGVPVVTWEGWKAIDKEETERGKLKGKP 371
++ ++ + DI N + +V P +G VVTW+GW+ I+ E+ GK KGKP
Sbjct: 391 TMNGAFAVAKTICDDINTNALDTSSVKPGYDADGKRVVTWDGWQRINDFESAAGKAKGKP 450
Query: 372 REKIISIEEMISVSG 386
REKI+SIEEM+ V+G
Sbjct: 451 REKIVSIEEMLRVAG 465
|
Required for synthesis of steroid hormones, for olfactory sensory behavior and completion of the second larval molt (a steroid mediated developmental transition) and pupariation. Drosophila melanogaster (taxid: 7227) EC: 1EC: .EC: 1EC: 8EC: .EC: 1EC: .EC: 2 |
| >sp|P22570|ADRO_HUMAN NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Homo sapiens GN=FDXR PE=1 SV=3 | Back alignment and function description |
|---|
Score = 337 bits (865), Expect = 6e-92, Method: Compositional matrix adjust.
Identities = 180/361 (49%), Positives = 243/361 (67%), Gaps = 21/361 (5%)
Query: 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFT 73
P +C+VGSGPAGFY AQ +LK PQ+ VDIYEK PVPFGLVR+GVAPDHPEVKNVINTFT
Sbjct: 39 PQICVVGSGPAGFYTAQHLLKH-PQAHVDIYEKQPVPFGLVRFGVAPDHPEVKNVINTFT 97
Query: 74 KTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSF 133
+T + R F+GN+ +G+D+++ +L AYHAVVL+YGA++ + L IPGE+ + SAR+F
Sbjct: 98 QTAHSGRCAFWGNVEVGRDVTVPELREAYHAVVLSYGAEDHRALEIPGEELPGVCSARAF 157
Query: 134 VGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLST 193
VGWYNGLPE+ L+ L C+ A ILGQGNVA+DVARILL+P + L+ TDIT+ +L L
Sbjct: 158 VGWYNGLPENQELEPDLSCDTAVILGQGNVALDVARILLTPPEHLERTDITKAALGVLRQ 217
Query: 194 SRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLT 253
SR+K+V LVGRRG LQVAFTIKE REM +LP + + G+ + + RPRKRLT
Sbjct: 218 SRVKTVWLVGRRGPLQVAFTIKELREMIQLPGARPILDPVDFLGLQDKIKEVPRPRKRLT 277
Query: 254 ELILKTS----NPDE--SKSNCSKYFRPIFLRSPTEFKLNDNG--------AITGINFAN 299
EL+L+T+ P E +++ S+ + F RSP + + +G A+T + +
Sbjct: 278 ELLLRTATEKPGPAEAARQASASRAWGLRFFRSPQQVLPSPDGRRAAGVRLAVTRLEGVD 337
Query: 300 Q--QALVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSCTVIPKEG----VPVVTWEG 353
+ +A+ T D E +P G+ SIGY+SR VD +PF+ K + EG VP + G
Sbjct: 338 EATRAVPTGDMEDLPCGLVLSSIGYKSRPVDPSVPFDSKLGVIPNVEGRVMDVPGLYCSG 397
Query: 354 W 354
W
Sbjct: 398 W 398
|
Serves as the first electron transfer protein in all the mitochondrial P450 systems. Including cholesterol side chain cleavage in all steroidogenic tissues, steroid 11-beta hydroxylation in the adrenal cortex, 25-OH-vitamin D3-24 hydroxylation in the kidney, and sterol C-27 hydroxylation in the liver. Homo sapiens (taxid: 9606) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: 2 |
| >sp|P08165|ADRO_BOVIN NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Bos taurus GN=FDXR PE=1 SV=3 | Back alignment and function description |
|---|
Score = 335 bits (859), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 181/369 (49%), Positives = 240/369 (65%), Gaps = 21/369 (5%)
Query: 6 YSTISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEV 65
+ST Q P +C+VGSGPAGFY AQ +LK ++ VDIYEK VPFGLVR+GVAPDHPEV
Sbjct: 32 FSTQEQ-TPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEV 90
Query: 66 KNVINTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGK 125
KNVINTFT+T + R FYGN+ +G+D+++ +L +AYHAVVL+YGA++ + L+IPGE+
Sbjct: 91 KNVINTFTQTARSDRCAFYGNVEVGRDVTVQELQDAYHAVVLSYGAEDHQALDIPGEELP 150
Query: 126 NIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITE 185
+ SAR+FVGWYNGLPE+ L L C+ A ILGQGNVA+DVARILL+P D L+ TDITE
Sbjct: 151 GVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITE 210
Query: 186 HSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATL 245
+L L SR+K+V +VGRRG LQVAFTIKE REM +LP + + G+ +
Sbjct: 211 AALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEA 270
Query: 246 ARPRKRLTELILKTSNPDES------KSNCSKYFRPIFLRSPTEFKLNDNG-AITGINFA 298
ARPRKRL EL+L+T+ +++ S+ + F RSP + + +G GI A
Sbjct: 271 ARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLA 330
Query: 299 ---------NQQALVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSCTVIPKEG---- 345
+A+ T D E +P G+ SIGY+SR +D +PF+ K V EG
Sbjct: 331 VTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRPIDPSVPFDPKLGVVPNMEGRVVD 390
Query: 346 VPVVTWEGW 354
VP + GW
Sbjct: 391 VPGLYCSGW 399
|
Serves as the first electron transfer protein in all the mitochondrial P450 systems. Including cholesterol side chain cleavage in all steroidogenic tissues, steroid 11-beta hydroxylation in the adrenal cortex, 25-OH-vitamin D3-24 hydroxylation in the kidney, and sterol C-27 hydroxylation in the liver. Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: 2 |
| >sp|P56522|ADRO_RAT NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Rattus norvegicus GN=Fdxr PE=1 SV=1 | Back alignment and function description |
|---|
Score = 332 bits (851), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 174/361 (48%), Positives = 230/361 (63%), Gaps = 20/361 (5%)
Query: 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFT 73
P +C+VGSGPAGFY AQ +LK ++ VDIYEK VPFGLVR+GVAPDHPEVKNVINTFT
Sbjct: 41 PQICVVGSGPAGFYTAQHLLKHHTRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFT 100
Query: 74 KTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSF 133
+T + R F GN+ +G+D+S+ +L AYHAVVL+YGA++ + L IPGE+ ++SAR+F
Sbjct: 101 QTARSDRCAFRGNVVVGRDVSVPELREAYHAVVLSYGAEDHQPLEIPGEELPGVVSARAF 160
Query: 134 VGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLST 193
VGWYNGLPE+ L L C+ A ILGQGNVA+DVARILL+P + L+ TDITE +L L
Sbjct: 161 VGWYNGLPENQKLAPDLSCDTAVILGQGNVALDVARILLTPPEHLEKTDITEVALGVLRQ 220
Query: 194 SRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLT 253
SR+K+V +VGRRG LQVAFTIKE REM +LP Q + G+ + + RPRKRLT
Sbjct: 221 SRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTQPILDPSDFLGLQDRIKDVPRPRKRLT 280
Query: 254 ELILKTSNPDESKSNCSKYFRPI------FLRSPTE-FKLNDNGAITGINFA-------- 298
EL+L+T+ ++ F RSP + D + GI A
Sbjct: 281 ELLLRTATEKPGVEEAARRALASRAWGLRFFRSPQQVLPTPDGRRVAGIRLAVTRLEGVG 340
Query: 299 -NQQALVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSCTVIPKEG----VPVVTWEG 353
+ +A+ T D E +P G+ S+GY+SR +D +PF+ K + EG P + G
Sbjct: 341 ESTRAVPTGDVEDLPCGLLLSSVGYKSRPIDPSVPFDPKLGIIPNTEGRVVNAPGLYCSG 400
Query: 354 W 354
W
Sbjct: 401 W 401
|
Serves as the first electron transfer protein in all the mitochondrial P450 systems. Including cholesterol side chain cleavage in all steroidogenic tissues, steroid 11-beta hydroxylation in the adrenal cortex, 25-OH-vitamin D3-24 hydroxylation in the kidney, and sterol C-27 hydroxylation in the liver. Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: 2 |
| >sp|P82861|ADRO_SALFO NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Salvelinus fontinalis GN=fdxr PE=2 SV=1 | Back alignment and function description |
|---|
Score = 332 bits (851), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 174/347 (50%), Positives = 227/347 (65%), Gaps = 21/347 (6%)
Query: 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFT 73
P VCIVG GPAGFY AQ ++K VDIYE+LPVPFGLVR+GVAPDHPEVKNVINTFT
Sbjct: 44 PKVCIVGGGPAGFYTAQHLVKTRTDVQVDIYERLPVPFGLVRFGVAPDHPEVKNVINTFT 103
Query: 74 KTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSF 133
+T + R +F+GN+ +G+D+++ +L AYHAVVL+YGA+ ++ + +PGED + SA+ F
Sbjct: 104 QTARHARCSFHGNVRVGKDVTVEELQEAYHAVVLSYGAEGNRTMGVPGEDLAGVYSAKDF 163
Query: 134 VGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLST 193
VGWYNGLP + L L CE A ILGQGNVA+DVAR+LLSPVD LK TDIT+H+L+ L+
Sbjct: 164 VGWYNGLPRNRELRPDLSCETAVILGQGNVALDVARMLLSPVDILKKTDITQHALDALAE 223
Query: 194 SRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLT 253
S ++ V +VGRRG LQVA TIKE REM LP + + G+ E +LARPRKRLT
Sbjct: 224 SSVRRVLIVGRRGPLQVACTIKELREMVNLPGTRPEMEASEFEGIAETLKSLARPRKRLT 283
Query: 254 ELILKTS--NPDE------SKSNCSKYFRPIFLRSPTE-FKLNDNGAITGINFA------ 298
EL+LK + P E +K+ + FR FLR P E D GI A
Sbjct: 284 ELLLKAAIETPGEEELEKRNKAERAWGFR--FLRRPLEVLPSTDLIRAAGIRLAVNRLEG 341
Query: 299 ---NQQALVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSCTVIP 342
+A+ T + E + G+ SIGY+S +D +PF+ + +IP
Sbjct: 342 DGEGVRAVATGEVEDVECGLVISSIGYKSLPIDPAVPFDGRKA-IIP 387
|
Salvelinus fontinalis (taxid: 8038) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q61578|ADRO_MOUSE NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Mus musculus GN=Fdxr PE=2 SV=1 | Back alignment and function description |
|---|
Score = 316 bits (810), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 179/412 (43%), Positives = 241/412 (58%), Gaps = 39/412 (9%)
Query: 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFT 73
P +C+VGSGPAGFY AQ +LK + VDIYEK VPFGLVR+GVAPDHPEVKNVINTFT
Sbjct: 41 PQICVVGSGPAGFYTAQHLLKHHTHAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFT 100
Query: 74 KTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSF 133
+T + R F GN+ +G+D+S+ +L AYHAVVL+YGA++ + L IPGE+ ++SAR+F
Sbjct: 101 QTARSDRCAFQGNVVVGRDVSVPELREAYHAVVLSYGAEDHQPLGIPGEELPGVVSARAF 160
Query: 134 VGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLST 193
VGWYNGLPE+ L L C+ A ILGQGNVA+DVARILL+P + L+ TDITE +L L
Sbjct: 161 VGWYNGLPENQELAPDLSCDTAVILGQGNVALDVARILLTPPEHLEKTDITEAALGALRQ 220
Query: 194 SRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARP--RKR 251
SR+K+V +VGRRG LQVAFTIKE REM +LP + + G+ + + RP R
Sbjct: 221 SRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPILDPSDFLGLQDRIKDVPRPRRRLT 280
Query: 252 LTELILKTSNPD----ESKSNCSKYFRPIFLRSPTE-FKLNDNGAITGINFA-------- 298
L T P ++ S+ + F RSP + D + GI A
Sbjct: 281 ELLLRTATEKPGVEEAARQALASRAWGLRFFRSPQQVLPTPDGQRVAGIRLAVTSLEGVG 340
Query: 299 -NQQALVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSCTVIPKEG----VPVVTWEG 353
+ +A+ T D E +P G+ S+GY+SR +D +PF+ K + EG VP + G
Sbjct: 341 ESTRAVPTGDVEDLPCGLLLSSVGYKSRPIDPSVPFDPKLGVIPNTEGRVVNVPGLYCSG 400
Query: 354 W-----------KAIDK--------EETERGKLKGKPREKIISIEEMISVSG 386
W D E+ + G L PR ++I+ ++S G
Sbjct: 401 WVKRGPTGVITTTMTDSFLTSQALLEDLKAGLLPSGPRPGYVAIQALLSNRG 452
|
Serves as the first electron transfer protein in all the mitochondrial P450 systems. Including cholesterol side chain cleavage in all steroidogenic tissues, steroid 11-beta hydroxylation in the adrenal cortex, 25-OH-vitamin D3-24 hydroxylation in the kidney, and sterol C-27 hydroxylation in the liver. Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: 2 |
| >sp|O59710|ADRO_SCHPO Probable NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=arh1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 246 bits (627), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 151/375 (40%), Positives = 211/375 (56%), Gaps = 25/375 (6%)
Query: 1 MMKRVYSTISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAP 60
+KR YST + P V I+GSGPA FY A ++L+ P +D++E PVPFGLVRYGVAP
Sbjct: 5 FIKRTYSTQTS-SPVVGIIGSGPAAFYTAHRLLRNDPNVKIDMFESRPVPFGLVRYGVAP 63
Query: 61 DHPEVKNVINTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIP 120
DHPEVK+V + F++ ++ + F GN+ +G D+SL DLT Y +VL YGA DK+L IP
Sbjct: 64 DHPEVKHVEHKFSEIAESTQFRFLGNVNVGTDVSLRDLTKNYDCLVLAYGAAGDKRLGIP 123
Query: 121 GEDGKNIISARSFVGWYNGLPEDASLDLSL-DCEEATILGQGNVAMDVARILLSPVDQLK 179
GED + SAR VGWYN P + +L+L L E+A ++G GNV++DVARILLS QL
Sbjct: 124 GEDLSGVYSAREVVGWYNSDPRNQNLELDLSQVEDAVVIGHGNVSLDVARILLSNPAQLS 183
Query: 180 STDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVF----RNEQL 235
TDI L+ L S +K +++VGRR V+FTIKE RE+ L VF N
Sbjct: 184 PTDINPLFLKSLERSNLKRLHIVGRRNIFSVSFTIKELRELFALS--SAVFFAPSFNYST 241
Query: 236 CGVHEASAT-LARPRKRLTELILKTSNPDESKSNCSKY------FRPIFLRSPTEFKLND 288
++E A+ L RPRKRL +L++ S+ + Y + F +P E L
Sbjct: 242 KWMNETDASGLDRPRKRLLKLLVSEIQKAVSEKRVAPYSKDKKCWNLEFGLTPVEI-LGH 300
Query: 289 NGAITGINFANQQALVTEDTE---LIPSGIAFRSIGYQSRCV----DSDIPFNEKSCTVI 341
G + + F ++ T+ IP+ + RSIGY+S + D +PF++ V
Sbjct: 301 KGNVENVRFQITDSIRTDAESKFTTIPAQLFIRSIGYKSMPLPGMKDVGVPFDDAKGIVK 360
Query: 342 PKEGV--PVVTWEGW 354
G P + GW
Sbjct: 361 NVNGFVRPGIYTSGW 375
|
Serves as the first electron transfer protein in all the mitochondrial P450 systems. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: 2 |
| >sp|Q54KG7|ADRO_DICDI Probable NADPH:adrenodoxin oxidoreductase, mitochondrial OS=Dictyostelium discoideum GN=fdxr PE=3 SV=1 | Back alignment and function description |
|---|
Score = 225 bits (573), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 138/357 (38%), Positives = 195/357 (54%), Gaps = 26/357 (7%)
Query: 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTK 74
N+CI+GSGPAG Y A ++ + +P + + I EKLP PFGLVR G++PDH K V NT K
Sbjct: 43 NLCIIGSGPAGLYTAAKVHRQIPHANITILEKLPYPFGLVRSGISPDHQNEKKVKNTLEK 102
Query: 75 T-GDNP-RVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGE-DGKNIISAR 131
++P ++ F GN+ + +DI + + +HAVVL G + DKKL IPGE KN+ AR
Sbjct: 103 VLLEHPHQIQFIGNVDIEKDIKFQYIKDNFHAVVLACGIEGDKKLGIPGELTLKNVYFAR 162
Query: 132 SFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSP-VDQLKSTDITEHSLEK 190
F+GW NG +D L E I+GQGNVA+DVAR+LL D+LK TDIT S +K
Sbjct: 163 EFIGWLNGNLKDQHKQFDLSNENLAIVGQGNVALDVARLLLKKNSDELKKTDITSTSFDK 222
Query: 191 LSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASAT-LARPR 249
++ S +K+++++GRRG L+V+FT KE RE+ L +V T + V E + L R +
Sbjct: 223 INKSNVKNIHIIGRRGPLEVSFTNKEIREILTLQNVNTFINDISTLDVSEEDVSKLERAK 282
Query: 250 KRLTELILKTSNP--DESKSNCSKYFRPIFLRSPTEF-------------------KLND 288
KR EL + P E +N + FLRSP E KL
Sbjct: 283 KRTFELFKQHLKPFDQEIANNGNMNLIFHFLRSPVELLDKYGSSSGSGDGMVLSKIKLEK 342
Query: 289 NGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSCTVIPKEG 345
N I ++A+ + + E+I FRSIGY +PF+ S ++ K G
Sbjct: 343 NKLIIDEKTQQKKAIGSGEFEIIECSSLFRSIGYTGTKQFPSVPFDFNSVSIPNKYG 399
|
Dictyostelium discoideum (taxid: 44689) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: 2 |
| >sp|O32886|FPRA_MYCLE NADPH-ferredoxin reductase FprA OS=Mycobacterium leprae (strain TN) GN=fprA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 224 bits (572), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 135/347 (38%), Positives = 186/347 (53%), Gaps = 31/347 (8%)
Query: 15 NVCIVGSGPAGFYCAQQILKLLPQS-----TVDIYEKLPVPFGLVRYGVAPDHPEVKNVI 69
++ IVGSGP+GF+ A +LK S VD+ E LP P+GLVR GVAPDHP++K++
Sbjct: 8 HIAIVGSGPSGFFAAASVLKAADASDEINVAVDMLEMLPTPWGLVRSGVAPDHPKIKSIS 67
Query: 70 NTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIIS 129
F KT ++PR F+GN+ +G+ I +L Y AV+ GA +D+ LNIPGED I+
Sbjct: 68 KQFEKTAEDPRFRFFGNVIVGKHIEPAELAERYDAVIYAVGAQSDRALNIPGEDLPGSIA 127
Query: 130 ARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLE 189
A FVGWYN P L A ++G GNVA+DV RIL++ D L TDI +H+LE
Sbjct: 128 AVDFVGWYNAHPNFHERSPDLSGSRAVVIGNGNVALDVTRILITDPDVLAFTDIADHALE 187
Query: 190 KLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPR 249
L I+ V +VGRRG LQ AFT E RE+ + V + QL G+ + +A A
Sbjct: 188 SLRPRGIEEVVIVGRRGPLQTAFTTLELRELADIEGVDVLVDPAQLEGISDENAAAAGKT 247
Query: 250 KR-----LTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALV 304
R L + ++T P + FR FL SP E K G + I Q LV
Sbjct: 248 TRQNIKVLRDYTVRTPKPGHRRI----VFR--FLTSPIEIK--GKGKVERIVLG-QNELV 298
Query: 305 TEDT-----------ELIPSGIAFRSIGYQSRCVDSDIPFNEKSCTV 340
T+D E +P+ + RSIGY+ +PF++ S T+
Sbjct: 299 TDDNGRVAAKDTGVREELPAQLIVRSIGYRG-VPTPGLPFDDSSVTI 344
|
May serve as electron transfer protein and supply electrons to P450 systems. Mycobacterium leprae (taxid: 1769) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: 2 |
| >sp|O05783|FPRA_MYCTU NADPH-ferredoxin reductase FprA OS=Mycobacterium tuberculosis GN=fprA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 223 bits (568), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 129/340 (37%), Positives = 189/340 (55%), Gaps = 19/340 (5%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQS-----TVDIYEKLPVPFGLVRYGVAPDHPEVKNVIN 70
+ IVGSGP+ F+ A +LK + VD+ E LP P+GLVR GVAPDHP++K++
Sbjct: 6 IAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISK 65
Query: 71 TFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISA 130
F KT ++PR F+GN+ +G+ + G+L+ Y AV+ GA +D+ LNIPGED I+A
Sbjct: 66 QFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGAQSDRMLNIPGEDLPGSIAA 125
Query: 131 RSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEK 190
FVGWYN P + L A ++G GNVA+DVARILL+ D L TDI +H+LE
Sbjct: 126 VDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALES 185
Query: 191 LSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGV-HEASATLARPR 249
L I+ V +VGRRG LQ AFT E RE+ L V V +L G+ E +A + +
Sbjct: 186 LRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGITDEDAAAVGKVC 245
Query: 250 KRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFK---------LNDNGAITGINFANQ 300
K+ +++ ++ + + FR FL SP E K L N ++
Sbjct: 246 KQNIKVLRGYADREPRPGHRRMVFR--FLTSPIEIKGKRKVERIVLGRNELVSD-GSGRV 302
Query: 301 QALVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSCTV 340
A T + E +P+ + RS+GY+ +PF+++S T+
Sbjct: 303 AAKDTGEREELPAQLVVRSVGYRG-VPTPGLPFDDQSGTI 341
|
May serve as electron transfer protein and supply electrons to P450 systems. Mycobacterium tuberculosis (taxid: 1773) EC: 1 EC: . EC: 1 EC: 8 EC: . EC: 1 EC: . EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 388 | ||||||
| 345486032 | 461 | PREDICTED: LOW QUALITY PROTEIN: NADPH:ad | 0.958 | 0.806 | 0.492 | 1e-108 | |
| 383860656 | 461 | PREDICTED: NADPH:adrenodoxin oxidoreduct | 0.873 | 0.735 | 0.571 | 1e-106 | |
| 380013956 | 458 | PREDICTED: NADPH:adrenodoxin oxidoreduct | 0.971 | 0.823 | 0.458 | 1e-102 | |
| 307212766 | 464 | NADPH:adrenodoxin oxidoreductase, mitoch | 0.865 | 0.724 | 0.543 | 1e-102 | |
| 195119752 | 479 | GI19640 [Drosophila mojavensis] gi|19390 | 0.961 | 0.778 | 0.466 | 1e-101 | |
| 195476052 | 466 | GE13030 [Drosophila yakuba] gi|194176397 | 0.951 | 0.791 | 0.481 | 1e-101 | |
| 193577815 | 451 | PREDICTED: NADPH:adrenodoxin oxidoreduct | 0.945 | 0.813 | 0.473 | 1e-101 | |
| 307187912 | 1106 | NADPH:adrenodoxin oxidoreductase, mitoch | 0.835 | 0.292 | 0.563 | 1e-101 | |
| 195402535 | 481 | GJ15006 [Drosophila virilis] gi|19414072 | 0.953 | 0.769 | 0.461 | 1e-100 | |
| 242018843 | 474 | NADPH:adrenodoxin oxidoreductase, putati | 0.904 | 0.740 | 0.539 | 1e-100 |
| >gi|345486032|ref|XP_003425390.1| PREDICTED: LOW QUALITY PROTEIN: NADPH:adrenodoxin oxidoreductase, mitochondrial-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 399 bits (1026), Expect = e-108, Method: Compositional matrix adjust.
Identities = 216/439 (49%), Positives = 284/439 (64%), Gaps = 67/439 (15%)
Query: 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFT 73
PN+CIVG+GPAGFY AQQILK L VDI E+LPVP+GLVR+GVAPDHPEVKNVINTF
Sbjct: 21 PNICIVGAGPAGFYAAQQILKGLNNVKVDILERLPVPYGLVRFGVAPDHPEVKNVINTFD 80
Query: 74 KTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSF 133
K + RV F GN+ +GQDIS+ +L YHAV+LTYGAD+DK LNIPGE+ KN++SARSF
Sbjct: 81 KIAKDARVQFLGNVNVGQDISVAELKEHYHAVLLTYGADDDKVLNIPGENLKNVVSARSF 140
Query: 134 VGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLST 193
VGWYNGLP + +L+++L+ E+ ILGQGNVA+D+ARILLSP+D+LK+TDIT HSLE+LS
Sbjct: 141 VGWYNGLPNNKNLNINLNTEDVVILGQGNVAIDIARILLSPIDKLKNTDITSHSLEQLSQ 200
Query: 194 SRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLT 253
S+++ V LVGRRG LQ AFTI E RE+ KL + +T +R + G+ E L RPRKRLT
Sbjct: 201 SKVQRVWLVGRRGPLQAAFTIAELRELLKLDNCKTYWRPKDFEGIKEIVPQLVRPRKRLT 260
Query: 254 ELILKTSNPDESKSN-CSKYFRPIFLRSPTEFKLNDN--------GAITGINFANQQALV 304
EL+LK+ + ++++ +K F PIFLR+P +F +D+ + G +F Q A
Sbjct: 261 ELMLKSIDDAQTETKKHNKEFHPIFLRAPVQFVGSDSIEKVKLSVTQLHGEDFLKQTAKS 320
Query: 305 TEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSCTVI----------------------- 341
T++ E IP G+ FRSIGY+SR +D +PF+ S V+
Sbjct: 321 TDEFEEIPCGLTFRSIGYKSRPIDPSVPFDTNSGRVLNSDGKIGNGLYAAGWVATGPVGV 380
Query: 342 -----------------------PKEG------------VPVVTWEGWKAIDKEETERGK 366
PK G V V++++GW+ IDKEE +RG
Sbjct: 381 ILSTMNNAYRVGSIINKEIDFTAPKAGCEEVKRILEHRNVSVISYQGWEKIDKEERQRGD 440
Query: 367 LKGKPREKIISIEEMISVS 385
GKPREKI+ I EMI ++
Sbjct: 441 KLGKPREKIVDISEMIDIA 459
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383860656|ref|XP_003705805.1| PREDICTED: NADPH:adrenodoxin oxidoreductase, mitochondrial-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 201/352 (57%), Positives = 249/352 (70%), Gaps = 13/352 (3%)
Query: 4 RVYSTISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHP 63
R++ST + P VCIVG+GPAGFY AQQ+LK VD+ EKLPVPFGLVR+GVAPDHP
Sbjct: 13 RLFST-EPIVPKVCIVGAGPAGFYAAQQLLKTSSDVKVDVLEKLPVPFGLVRFGVAPDHP 71
Query: 64 EVKNVINTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGED 123
EVKNVI+TF KT NPR F GN+ +G+D++L +L YHAV+LT+GA+ D+ L IPGE+
Sbjct: 72 EVKNVIHTFEKTASNPRFQFIGNVNVGKDVTLKELQEMYHAVLLTFGAEADRALGIPGEN 131
Query: 124 GKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDI 183
NIIS R FVGWYNG+P D++LD++LD EEA ILGQGNVA+D+ARILLSP+D+LK TDI
Sbjct: 132 LNNIISGRRFVGWYNGIPADSNLDINLDIEEAIILGQGNVAIDIARILLSPIDKLKHTDI 191
Query: 184 TEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASA 243
T +LEKLS S+I+ V+LVGRRG LQ AFTI E REM KL T +R + GV E +
Sbjct: 192 TSFALEKLSQSKIRKVSLVGRRGPLQAAFTIAELREMLKLEGCHTYWRKDDFSGVKEVVS 251
Query: 244 TLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFA----- 298
+LARPRKRLTEL+LK + SK F PIFLRSPTEF L N ++ I FA
Sbjct: 252 SLARPRKRLTELMLKHVEEVPLEPRNSKEFHPIFLRSPTEF-LGSN-SVNSIKFAITKLE 309
Query: 299 -----NQQALVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSCTVIPKEG 345
Q A+ T E +P +AFRSIGY+S +D IPF++K+ V EG
Sbjct: 310 GDDIPKQVAVPTGSFEEMPCNLAFRSIGYKSVQIDKLIPFDDKAGRVKNIEG 361
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380013956|ref|XP_003691010.1| PREDICTED: NADPH:adrenodoxin oxidoreductase, mitochondrial-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 207/451 (45%), Positives = 276/451 (61%), Gaps = 74/451 (16%)
Query: 4 RVYSTISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHP 63
R++ST + P VCI+G+GPAGFY AQQ+LK+ + TVD+ EKLPVP+GLVRYGVAPDH
Sbjct: 11 RLFST-EHIIPKVCIIGAGPAGFYSAQQLLKINNKITVDLLEKLPVPYGLVRYGVAPDHQ 69
Query: 64 EVKNVINTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGED 123
VKNVI+ F K NPR F GN+ +G+D+++ +L YH V+L YGA+ DK LNIPGE+
Sbjct: 70 AVKNVIHRFDKIASNPRFRFVGNVNIGKDVTIKELQEIYHVVLLAYGAEEDKTLNIPGEN 129
Query: 124 GKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDI 183
NII R FVGWYNGLP D++L+++LD EEA ILGQGNVA+D+ARILL+PVD+LK+TDI
Sbjct: 130 LNNIIPGRRFVGWYNGLPADSNLNINLDVEEAVILGQGNVAIDIARILLTPVDKLKNTDI 189
Query: 184 TEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASA 243
T +SLEKLS S+++ ++L+GRRG LQ AFTI E RE+ KL + Q+ + + +
Sbjct: 190 TSYSLEKLSKSKVRKISLIGRRGPLQAAFTIAELRELLKLNNCQSYWHKDDFIYAKQIVH 249
Query: 244 TLARPRKRLTELILK--TSNPDESKSNCSKYFRPIFLRSPTEF---------KLNDNGAI 292
TL R RKRL EL+L+ P ++K +K +FLRSP +F KL+ N +
Sbjct: 250 TLVRHRKRLIELMLEYLEKTPSDTK---TKELYLLFLRSPVKFLGSKDIKSIKLSIN-KL 305
Query: 293 TGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKS--------------- 337
G N Q A+ T E I G+AFRSIGY+S +D+ IPF +++
Sbjct: 306 EGNNITTQFAIPTGLFEEIECGLAFRSIGYKSVPIDASIPFEKENGHIKNIAGKVKENLY 365
Query: 338 -----------------------CTVIPKE--------------------GVPVVTWEGW 354
T+I KE GVP V++ W
Sbjct: 366 AAGWAATGSIGVILSTMTSAFQVATLINKELSITKNKPGFEGLSKILNHRGVPTVSYNDW 425
Query: 355 KAIDKEETERGKLKGKPREKIISIEEMISVS 385
K ID+ E ERGK+ GKPREKII I EM+ ++
Sbjct: 426 KKIDQVERERGKILGKPREKIIDINEMLKIA 456
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307212766|gb|EFN88437.1| NADPH:adrenodoxin oxidoreductase, mitochondrial [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/348 (54%), Positives = 245/348 (70%), Gaps = 12/348 (3%)
Query: 4 RVYSTISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHP 63
R+ ST Q P VCI+G+GPAGFY AQQ+LK L T+DI EKLP+PFGLVR+GVAPDHP
Sbjct: 11 RMLST-EQRTPKVCIIGAGPAGFYAAQQMLKGLNDVTIDILEKLPLPFGLVRFGVAPDHP 69
Query: 64 EVKNVINTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGED 123
EVKNV+NTF KT NPRV F GNI +G D+++ L Y AV+LT+GA D+KLNIPGE+
Sbjct: 70 EVKNVLNTFHKTATNPRVQFLGNINIGTDVTVPQLRELYDAVLLTFGAQKDQKLNIPGEN 129
Query: 124 GKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDI 183
+NIIS R FVGWYNG+P D L+++L+ EE I+GQGNVA+D+ RILL PVD+LK+TDI
Sbjct: 130 LENIISGRRFVGWYNGVPTDKDLEINLNVEEVVIIGQGNVAVDITRILLMPVDKLKNTDI 189
Query: 184 TEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASA 243
T ++L++LS SR++ V+++GRRG LQVAFTI E RE+ KL +++TV+R + GV
Sbjct: 190 TSYALDRLSQSRVRKVSMIGRRGPLQVAFTIAELRELIKLENMKTVWRPQDFAGVQTIVP 249
Query: 244 TLARPRKRLTELILKTSNPDESKSNCSKY---FRPIFLRSPTEFKLNDN--------GAI 292
TLARPRKRLTEL+LK+ + +N S Y PIFLRSP EF+ D+ +
Sbjct: 250 TLARPRKRLTELMLKSLEESMNLTNNSTYTKELHPIFLRSPLEFRGTDHVKSIRLSVNRL 309
Query: 293 TGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSCTV 340
G NQ A + E I G+A RSIGY+S +D+ IPF+ + V
Sbjct: 310 RGDMIQNQVAEAIGEFEEITCGLALRSIGYKSLQIDNSIPFDVRKGRV 357
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195119752|ref|XP_002004393.1| GI19640 [Drosophila mojavensis] gi|193909461|gb|EDW08328.1| GI19640 [Drosophila mojavensis] | Back alignment and taxonomy information |
|---|
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 206/442 (46%), Positives = 266/442 (60%), Gaps = 69/442 (15%)
Query: 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTF 72
K +CIVG+GPAGFY AQ +LK L TVDI EKLPVPFGLVR+GVAPDHPEVKNVINTF
Sbjct: 38 KKRICIVGAGPAGFYAAQYLLKQLSDCTVDIVEKLPVPFGLVRFGVAPDHPEVKNVINTF 97
Query: 73 TKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARS 132
TKT +NPR+ F+GN+ LGQD+SL +L YHAV+LTYGAD D++L + E+ K++ISAR
Sbjct: 98 TKTAENPRLRFFGNVSLGQDVSLQELRQRYHAVLLTYGADQDRELQLQNEEQKHVISARK 157
Query: 133 FVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLS 192
FV WYNGLP L L + TI+GQGNVAMDVAR+LLSP+D LK+TD TE++LE L+
Sbjct: 158 FVAWYNGLPGAEQLQPDLSGRDVTIVGQGNVAMDVARMLLSPIDTLKATDTTEYALEALA 217
Query: 193 TSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRL 252
S++K V+LVGRRG LQ AFTIKE REM KLP+V T +R + G+ E L RPR+RL
Sbjct: 218 RSQVKRVHLVGRRGPLQAAFTIKELREMLKLPNVTTNWRADDFAGIAEQVEQLQRPRRRL 277
Query: 253 TELILKTSNPDESKSNCS---KYFRPIFLRSP-------TEF---KLNDNGAIT------ 293
TEL+LK+ + ++ + K F PIFLR+P EF +L +N A+
Sbjct: 278 TELMLKSLSEQSKRTATAVDGKQFLPIFLRAPKAISAKEIEFAVTQLQENAAVATDTTEC 337
Query: 294 -------------------GINFANQQALVTEDTELI----------------------P 312
INF Q+ V D + P
Sbjct: 338 LPADLILRSIGYKSSCADPAINFDPQRGHVRHDQGRVLKEGEGSSVEPGLYVAGWLGTGP 397
Query: 313 SGIAFRSIGYQ---SRCVDSDIPFNEKSCTVIPKEGVPV-----VTWEGWKAIDKEETER 364
+G+ ++ ++ + DI N T K G V VTW+GW ID+ E E
Sbjct: 398 TGVILTTMNGAFAVAKTICDDITANAFD-TASTKPGFEVANQRIVTWDGWLRIDQHECEA 456
Query: 365 GKLKGKPREKIISIEEMISVSG 386
GK KGK REKI+ +E+M+ ++G
Sbjct: 457 GKAKGKLREKIVDVEQMLRIAG 478
|
Source: Drosophila mojavensis Species: Drosophila mojavensis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195476052|ref|XP_002090296.1| GE13030 [Drosophila yakuba] gi|194176397|gb|EDW90008.1| GE13030 [Drosophila yakuba] | Back alignment and taxonomy information |
|---|
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 210/436 (48%), Positives = 264/436 (60%), Gaps = 67/436 (15%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKT 75
+CIVG+GPAGFY AQ ILK L VD+ EKLPVPFGLVR+GVAPDHPEVKNVINTFTKT
Sbjct: 32 ICIVGAGPAGFYAAQLILKQLDNCVVDVVEKLPVPFGLVRFGVAPDHPEVKNVINTFTKT 91
Query: 76 GDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVG 135
++PR+ ++GNI LG D+SL +L + YHAV+LTYGAD D++L + E N+ISAR FV
Sbjct: 92 AEHPRLRYFGNIALGTDVSLRELRDRYHAVLLTYGADQDRELELENEQQGNVISARKFVA 151
Query: 136 WYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSR 195
WYNGLP +L L + TI+GQGNVA+DVAR+LLSP+D LKSTD TE++LE LS S+
Sbjct: 152 WYNGLPGAENLAPDLTGRDVTIVGQGNVAVDVARLLLSPLDALKSTDTTEYALEALSRSQ 211
Query: 196 IKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTEL 255
++ V+LVGRRG LQ AFTIKE REM KLP+V T +R+E G+ L RPRKRLTEL
Sbjct: 212 VQRVHLVGRRGPLQAAFTIKELREMLKLPNVDTRWRSEDFSGIDPQLDKLQRPRKRLTEL 271
Query: 256 ILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGI 315
+LK S ++ + + SK F PIFLR+P + + + A+ T TE +PS +
Sbjct: 272 MLK-SLKEQGRISGSKQFLPIFLRAPKAISPGEM-EFSVTELQQEAAVPTTSTERLPSHL 329
Query: 316 AFRSIGYQSRCVDSDIPFNEKSCTV------IPKE---------------------GVPV 348
RSIGY+S CVD+ I F+ + V I KE GV V
Sbjct: 330 ILRSIGYKSSCVDTGINFDNRRGRVHNIDGRILKEDASAKVDPGLYVAGWLGTGPTGVIV 389
Query: 349 VTWEGWKAIDKE--------------------------------------ETERGKLKGK 370
T G A+ K E+ GK KGK
Sbjct: 390 TTMNGAFAVAKAICDDINANALDTSSAKPGYDADGKRVVTWDGWQRINDFESAAGKAKGK 449
Query: 371 PREKIISIEEMISVSG 386
PREKI+SIEEM+ V+G
Sbjct: 450 PREKIVSIEEMLRVAG 465
|
Source: Drosophila yakuba Species: Drosophila yakuba Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193577815|ref|XP_001948763.1| PREDICTED: NADPH:adrenodoxin oxidoreductase, mitochondrial-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 205/433 (47%), Positives = 260/433 (60%), Gaps = 66/433 (15%)
Query: 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTK 74
V IVG+GPAGFYCAQQ+LK +P +DIYE+LPVPFGLVRYGVAPDHPEVKNVINTFTK
Sbjct: 21 QVGIVGAGPAGFYCAQQLLKKIPGCQIDIYERLPVPFGLVRYGVAPDHPEVKNVINTFTK 80
Query: 75 TGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFV 134
T N + F GN+ LG I+L L ++Y+AVVL YGAD D+KLNI GE+ N++SA F+
Sbjct: 81 TASNENIRFIGNVSLGCHITLAQLKHSYNAVVLAYGADEDRKLNIAGENVSNVVSATKFI 140
Query: 135 GWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTS 194
GWYNGLP D ++ + LD E A I+GQGNVA+DVARILLSPVD+L+ TDITE+SLE L+ S
Sbjct: 141 GWYNGLPADKNIKVDLDVEHAVIVGQGNVALDVARILLSPVDELRKTDITEYSLEALTQS 200
Query: 195 RIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTE 254
++K V LVGRRG LQVAFTIKE REM KLP V T F Q+ + + L RPRKRL +
Sbjct: 201 KVKKVTLVGRRGPLQVAFTIKELREMLKLPGVSTHFFENQMNDIDKVINDLPRPRKRLMQ 260
Query: 255 LILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFA-----NQQALVTEDTE 309
L+ S E + +K F +FLR+P + I GI A ++A+VT++
Sbjct: 261 LMYDASQKTEVR---NKLFDILFLRTP--ISILGTSKIEGIELAVNHLEGERAVVTDEKY 315
Query: 310 LIPSGIAFRSIGYQSRCVDSDIPFNEKSCTVIPKEGVPVVTW------------------ 351
+ +AFRSIGY+S D DIPF++ S TV GV V W
Sbjct: 316 TLKCELAFRSIGYRSVQADPDIPFDKMSSTVPQSTGVYSVGWLSSGPVGVILSTMSNAFQ 375
Query: 352 ------------------EGWKAIDKEETERGKL--------------------KGKPRE 373
G+ I K ++G + GKPRE
Sbjct: 376 AATLIGQHFDKGLLGERKPGYDYISKILEDKGIITVDWNGWMKIDKVEVERGIKHGKPRE 435
Query: 374 KIISIEEMISVSG 386
KI+ I+EM+ + G
Sbjct: 436 KIVDIDEMLQIGG 448
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307187912|gb|EFN72825.1| NADPH:adrenodoxin oxidoreductase, mitochondrial [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 187/332 (56%), Positives = 233/332 (70%), Gaps = 8/332 (2%)
Query: 22 GPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRV 81
GPAGFY AQQ+LK VDI EKLPVPFGLVR+GVAPDHPEVKNVINTF KT NPRV
Sbjct: 674 GPAGFYAAQQLLKSSGDVRVDILEKLPVPFGLVRFGVAPDHPEVKNVINTFHKTATNPRV 733
Query: 82 NFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLP 141
F GN+ +G DI++ L N YHAV+LTYGA D+ LNIPGE N+IS R FVGWYNG+P
Sbjct: 734 QFLGNVNVGTDITIDQLRNFYHAVLLTYGAQKDRLLNIPGEHLNNVISGRRFVGWYNGIP 793
Query: 142 EDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNL 201
D LD++LD EE +LGQGNVA+D+ RILL+P+D+LK+TDIT +LE+LS SR++ V++
Sbjct: 794 ADKDLDINLDMEEVIVLGQGNVAIDITRILLTPIDKLKNTDITSFALERLSHSRVRKVSM 853
Query: 202 VGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSN 261
VGRRG LQ AFTI E RE+ KL + + ++R + GV + TLARPRKRLTEL+LK+
Sbjct: 854 VGRRGPLQAAFTIAELRELLKLENCKNLWRLQDFTGVRDIVPTLARPRKRLTELMLKSLE 913
Query: 262 PDESKSNCSKYFRPIFLRSPTEFKLNDN--------GAITGINFANQQALVTEDTELIPS 313
S S +K PIFLRSP EF +D+ + G F +Q A T + E I
Sbjct: 914 ESVSDSTQTKELNPIFLRSPVEFHGDDDLQSIRFAVNRLQGDAFQDQVAEATNEFETISC 973
Query: 314 GIAFRSIGYQSRCVDSDIPFNEKSCTVIPKEG 345
G+A RSIGY+S +DS IPF+ K V+ K+G
Sbjct: 974 GLAVRSIGYKSVQIDSSIPFDGKKGRVMNKDG 1005
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195402535|ref|XP_002059860.1| GJ15006 [Drosophila virilis] gi|194140726|gb|EDW57197.1| GJ15006 [Drosophila virilis] | Back alignment and taxonomy information |
|---|
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 203/440 (46%), Positives = 266/440 (60%), Gaps = 70/440 (15%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKT 75
+CIVG+GPAGFY AQ +LK L TVDI EKLPVPFGLVR+GVAPDHPEVKNVINTFTKT
Sbjct: 42 ICIVGAGPAGFYAAQYLLKQLSDCTVDIVEKLPVPFGLVRFGVAPDHPEVKNVINTFTKT 101
Query: 76 GDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGE-DGKNIISARSFV 134
++PR+ F+GN+ LG+D+SL +L + YHAV+LTYGAD D++L + E ++ISAR FV
Sbjct: 102 AEHPRLRFFGNVTLGEDVSLQELRDRYHAVLLTYGADQDRELQLDNERQAPHVISARKFV 161
Query: 135 GWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTS 194
WYNGLP L L + TI+GQGNVA+DVAR+LLSP+D LK TD TE++LE L+ S
Sbjct: 162 AWYNGLPGAEQLQPDLSGRDVTIVGQGNVAVDVARMLLSPIDTLKLTDTTEYALEALARS 221
Query: 195 RIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTE 254
+++ V+LVGRRG LQ AFTIKE REM KLP+V+T +R G+ E L RPR+RLTE
Sbjct: 222 KVERVHLVGRRGPLQAAFTIKELREMLKLPNVETCWRAADFTGIAEQVDKLQRPRRRLTE 281
Query: 255 LILKTSNPDESKSNCS--KYFRPIFLRSPTEFKLND-NGAITGINFANQQALVTEDTELI 311
L+LK+ + K F PIFLR+P N+ +IT + N+ A+ TE +E +
Sbjct: 282 LMLKSLGEQRKPRAAANGKQFLPIFLRAPKAIAANEMEFSITELQ-ENEAAVATEASERL 340
Query: 312 PSGIAFRSIGYQSRCVDSDIPFNEKSCTVIPKEGV-----------PVVTWEGW------ 354
P+ + RSIGY+S C D+ I F+ K V ++G P + GW
Sbjct: 341 PADLILRSIGYKSSCADAGINFDPKRGHVCNRQGRVLKPGESDAVEPGLYVAGWLCTGPT 400
Query: 355 -----------------------KAID-------------------------KEETERGK 366
KA+D + E+E GK
Sbjct: 401 GVILTTMNGAFAVAKTICDDIANKAVDTASAKPGFEPGSRRIVNWEGWRRIDQHESEAGK 460
Query: 367 LKGKPREKIISIEEMISVSG 386
KGKPREKI+S E+M+ ++G
Sbjct: 461 AKGKPREKIVSTEQMLRIAG 480
|
Source: Drosophila virilis Species: Drosophila virilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242018843|ref|XP_002429880.1| NADPH:adrenodoxin oxidoreductase, putative [Pediculus humanus corporis] gi|212514914|gb|EEB17142.1| NADPH:adrenodoxin oxidoreductase, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 196/363 (53%), Positives = 245/363 (67%), Gaps = 12/363 (3%)
Query: 4 RVYSTISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHP 63
R YS + +CIVGSGPAGFY AQQ++K+ P VDIYE+LPVPFGLVRYGVAPDH
Sbjct: 19 RKYSCSNTSGIKICIVGSGPAGFYSAQQLIKISPNVVVDIYERLPVPFGLVRYGVAPDHA 78
Query: 64 EVKNVINTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGED 123
+VKNVINTFTKT N VNFYGNICLG DI+L DL N+YH V+LTYGA+ D+KLNI GE
Sbjct: 79 DVKNVINTFTKTAKNSNVNFYGNICLGIDITLQDLINSYHVVLLTYGAEEDRKLNIEGEK 138
Query: 124 GKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDI 183
KN+ISAR FVGWYNGLP D +L++ L+ E A I+GQGNVA+DVARILLSP+D+LK TDI
Sbjct: 139 LKNVISARRFVGWYNGLPNDRNLNVDLNGENAVIIGQGNVAIDVARILLSPIDKLKHTDI 198
Query: 184 TEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASA 243
TE++LE L+ S++K+V L+GRRG LQ+A TIKE REM K+P V T+ + +
Sbjct: 199 TEYALEALNGSKVKNVCLIGRRGPLQIACTIKELREMIKMPGVCTILDRNDFVEIEKIIP 258
Query: 244 TLARPRKRLTELILKTS--NPDESKSNCSKYFRPIFLRSPTEFKLNDN--------GAIT 293
L RPRKRLTEL+ TS N ++ N K F+ IF R+P E N +
Sbjct: 259 GLGRPRKRLTELMYNTSIKNDMNNEMNNEKKFQIIFKRTPLELLGNGKVEKIRTGVNVLE 318
Query: 294 GINFANQQALVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSCTVIPKEG--VPVVTW 351
G N Q A +T + IP + RSIGY+S + +IPF+ K + K G +P +
Sbjct: 319 GENVETQTAKITNEIIEIPCDLCLRSIGYKSIQAEPNIPFDFKKGIIENKNGRILPGLYS 378
Query: 352 EGW 354
GW
Sbjct: 379 SGW 381
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 388 | ||||||
| FB|FBgn0015582 | 466 | dare "defective in the avoidan | 0.819 | 0.682 | 0.562 | 7.4e-103 | |
| UNIPROTKB|E7EQC1 | 522 | FDXR "NADPH:adrenodoxin oxidor | 0.863 | 0.641 | 0.508 | 1e-92 | |
| UNIPROTKB|P22570 | 491 | FDXR "NADPH:adrenodoxin oxidor | 0.868 | 0.686 | 0.507 | 1.3e-92 | |
| UNIPROTKB|E2RDC3 | 492 | FDXR "NADPH:adrenodoxin oxidor | 0.878 | 0.693 | 0.494 | 7e-92 | |
| UNIPROTKB|P08165 | 492 | FDXR "NADPH:adrenodoxin oxidor | 0.873 | 0.689 | 0.5 | 1.9e-91 | |
| UNIPROTKB|F1NRB1 | 466 | FDXR "NADPH:adrenodoxin oxidor | 0.845 | 0.703 | 0.510 | 1.9e-91 | |
| RGD|621648 | 494 | Fdxr "ferredoxin reductase" [R | 0.871 | 0.684 | 0.498 | 4.9e-91 | |
| UNIPROTKB|P56522 | 494 | Fdxr "NADPH:adrenodoxin oxidor | 0.871 | 0.684 | 0.498 | 4.9e-91 | |
| MGI|MGI:104724 | 494 | Fdxr "ferredoxin reductase" [M | 0.871 | 0.684 | 0.495 | 1.7e-90 | |
| UNIPROTKB|F1RV70 | 492 | FDXR "NADPH:adrenodoxin oxidor | 0.899 | 0.709 | 0.485 | 5.6e-90 |
| FB|FBgn0015582 dare "defective in the avoidance of repellents" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 897 (320.8 bits), Expect = 7.4e-103, Sum P(2) = 7.4e-103
Identities = 181/322 (56%), Positives = 232/322 (72%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKT 75
+CIVG+GPAGFY AQ ILK L VD+ EKLPVPFGLVR+GVAPDHPEVKNVINTFTKT
Sbjct: 32 ICIVGAGPAGFYAAQLILKQLDNCVVDVVEKLPVPFGLVRFGVAPDHPEVKNVINTFTKT 91
Query: 76 GDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVG 135
++PR+ ++GNI LG D+SL +L + YHAV+LTYGAD D++L + E N+ISAR FV
Sbjct: 92 AEHPRLRYFGNISLGTDVSLRELRDRYHAVLLTYGADQDRQLELENEQLDNVISARKFVA 151
Query: 136 WYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSR 195
WYNGLP +L L + TI+GQGNVA+DVAR+LLSP+D LK+TD TE++LE LS S+
Sbjct: 152 WYNGLPGAENLAPDLSGRDVTIVGQGNVAVDVARMLLSPLDALKTTDTTEYALEALSCSQ 211
Query: 196 IKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTEL 255
++ V+LVGRRG LQ AFTIKE REM KLP+V T +R E G+ L RPRKRLTEL
Sbjct: 212 VERVHLVGRRGPLQAAFTIKELREMLKLPNVDTRWRTEDFSGIDMQLDKLQRPRKRLTEL 271
Query: 256 ILKTSNPDESKSNCSKYFRPIFLRSPTEFKLND-NGAITGINFANQQALVTEDTELIPSG 314
+LK S ++ + + SK F PIFLR+P + ++T + + A+ T TE +PS
Sbjct: 272 MLK-SLKEQGRISGSKQFLPIFLRAPKAIAPGEMEFSVTELQ--QEAAVPTSSTERLPSH 328
Query: 315 IAFRSIGYQSRCVDSDIPFNEK 336
+ RSIGY+S CVD+ I F+ +
Sbjct: 329 LILRSIGYKSSCVDTGINFDTR 350
|
|
| UNIPROTKB|E7EQC1 FDXR "NADPH:adrenodoxin oxidoreductase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 842 (301.5 bits), Expect = 1.0e-92, Sum P(2) = 1.0e-92
Identities = 180/354 (50%), Positives = 243/354 (68%)
Query: 9 ISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNV 68
I + P +C+VGSGPAGFY AQ +LK PQ+ VDIYEK PVPFGLVR+GVAPDHPEVKNV
Sbjct: 65 IQEKTPQICVVGSGPAGFYTAQHLLKH-PQAHVDIYEKQPVPFGLVRFGVAPDHPEVKNV 123
Query: 69 INTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNII 128
INTFT+T + R F+GN+ +G+D+++ +L AYHAVVL+YGA++ + L IPGE+ +
Sbjct: 124 INTFTQTAHSGRCAFWGNVEVGRDVTVPELREAYHAVVLSYGAEDHRALEIPGEELPGVC 183
Query: 129 SARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSL 188
SAR+FVGWYNGLPE+ L+ L C+ A ILGQGNVA+DVARILL+P + L+ TDIT+ +L
Sbjct: 184 SARAFVGWYNGLPENQELEPDLSCDTAVILGQGNVALDVARILLTPPEHLERTDITKAAL 243
Query: 189 EKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARP 248
L SR+K+V LVGRRG LQVAFTIKE REM +LP + + G+ + + RP
Sbjct: 244 GVLRQSRVKTVWLVGRRGPLQVAFTIKELREMIQLPGARPILDPVDFLGLQDKIKEVPRP 303
Query: 249 RKRLTELILKTSN----PDES--KSNCSKYFRPIFLRSPTEFKLNDNG--------AITG 294
RKRLTEL+L+T+ P E+ +++ S+ + F RSP + + +G A+T
Sbjct: 304 RKRLTELLLRTATEKPGPAEAARQASASRAWGLRFFRSPQQVLPSPDGRRAAGVRLAVTR 363
Query: 295 INFANQ--QALVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSCTVIPK-EG 345
+ ++ +A+ T D E +P G+ SIGY+SR VD +PF+ K VIP EG
Sbjct: 364 LEGVDEATRAVPTGDMEDLPCGLVLSSIGYKSRPVDPSVPFDSK-LGVIPNVEG 416
|
|
| UNIPROTKB|P22570 FDXR "NADPH:adrenodoxin oxidoreductase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 841 (301.1 bits), Expect = 1.3e-92, Sum P(2) = 1.3e-92
Identities = 181/357 (50%), Positives = 245/357 (68%)
Query: 6 YSTISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEV 65
+ST + P +C+VGSGPAGFY AQ +LK PQ+ VDIYEK PVPFGLVR+GVAPDHPEV
Sbjct: 32 FST-QEKTPQICVVGSGPAGFYTAQHLLKH-PQAHVDIYEKQPVPFGLVRFGVAPDHPEV 89
Query: 66 KNVINTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGK 125
KNVINTFT+T + R F+GN+ +G+D+++ +L AYHAVVL+YGA++ + L IPGE+
Sbjct: 90 KNVINTFTQTAHSGRCAFWGNVEVGRDVTVPELREAYHAVVLSYGAEDHRALEIPGEELP 149
Query: 126 NIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITE 185
+ SAR+FVGWYNGLPE+ L+ L C+ A ILGQGNVA+DVARILL+P + L+ TDIT+
Sbjct: 150 GVCSARAFVGWYNGLPENQELEPDLSCDTAVILGQGNVALDVARILLTPPEHLERTDITK 209
Query: 186 HSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATL 245
+L L SR+K+V LVGRRG LQVAFTIKE REM +LP + + G+ + +
Sbjct: 210 AALGVLRQSRVKTVWLVGRRGPLQVAFTIKELREMIQLPGARPILDPVDFLGLQDKIKEV 269
Query: 246 ARPRKRLTELILKTSN----PDES--KSNCSKYFRPIFLRSPTEFKLNDNG--------A 291
RPRKRLTEL+L+T+ P E+ +++ S+ + F RSP + + +G A
Sbjct: 270 PRPRKRLTELLLRTATEKPGPAEAARQASASRAWGLRFFRSPQQVLPSPDGRRAAGVRLA 329
Query: 292 ITGINFANQ--QALVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSCTVIPK-EG 345
+T + ++ +A+ T D E +P G+ SIGY+SR VD +PF+ K VIP EG
Sbjct: 330 VTRLEGVDEATRAVPTGDMEDLPCGLVLSSIGYKSRPVDPSVPFDSK-LGVIPNVEG 385
|
|
| UNIPROTKB|E2RDC3 FDXR "NADPH:adrenodoxin oxidoreductase, mitochondrial" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 831 (297.6 bits), Expect = 7.0e-92, Sum P(2) = 7.0e-92
Identities = 178/360 (49%), Positives = 246/360 (68%)
Query: 3 KRVYSTISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDH 62
++ +ST Q P +C+VGSGPAGFY AQ +LK P++ VDIYEK VPFGLVR+GVAPDH
Sbjct: 29 RQQFSTQEQ-PPQICVVGSGPAGFYTAQHLLKHHPRAHVDIYEKQLVPFGLVRFGVAPDH 87
Query: 63 PEVKNVINTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGE 122
PEVKNVINTFT+T + R F+GN+ +G+D+++ +L AYHAVVL+YGA++ + L IPGE
Sbjct: 88 PEVKNVINTFTQTARSGRCAFHGNVVVGRDVAVPELQAAYHAVVLSYGAEDHQALEIPGE 147
Query: 123 DGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTD 182
+ + SAR+FVGWYNGLPE+ L L C+ A ILGQGNVA+DVARILL+P + L+ TD
Sbjct: 148 ELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPEYLEKTD 207
Query: 183 ITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEAS 242
ITE +L L SR+K+V +VGRRG LQVAFTIKE REM +LP + + G+ +
Sbjct: 208 ITEAALGVLRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPILDPTDFLGLQDRI 267
Query: 243 ATLARPRKRLTELILKTSN--P--DES--KSNCSKYFRPIFLRSPTEFKLNDNG------ 290
+ RPRKRLTEL+L+T+ P +E+ +++ S+ + F RSP + + +G
Sbjct: 268 KEVPRPRKRLTELLLRTATERPGAEEAARQASASRTWGLRFFRSPQQVLPSPDGRRAAGI 327
Query: 291 --AITGINFANQ--QALVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSCTVIPK-EG 345
A+T + + +A+ T D+E +P G+ S+GY+SR +D +PF+ K VIP EG
Sbjct: 328 RLAVTRLEGVGEAARAVPTGDSEDLPCGLVLSSVGYKSRPIDPSVPFDSKR-GVIPNMEG 386
|
|
| UNIPROTKB|P08165 FDXR "NADPH:adrenodoxin oxidoreductase, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 828 (296.5 bits), Expect = 1.9e-91, Sum P(2) = 1.9e-91
Identities = 178/356 (50%), Positives = 241/356 (67%)
Query: 6 YSTISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEV 65
+ST Q P +C+VGSGPAGFY AQ +LK ++ VDIYEK VPFGLVR+GVAPDHPEV
Sbjct: 32 FSTQEQT-PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEV 90
Query: 66 KNVINTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGK 125
KNVINTFT+T + R FYGN+ +G+D+++ +L +AYHAVVL+YGA++ + L+IPGE+
Sbjct: 91 KNVINTFTQTARSDRCAFYGNVEVGRDVTVQELQDAYHAVVLSYGAEDHQALDIPGEELP 150
Query: 126 NIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITE 185
+ SAR+FVGWYNGLPE+ L L C+ A ILGQGNVA+DVARILL+P D L+ TDITE
Sbjct: 151 GVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITE 210
Query: 186 HSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATL 245
+L L SR+K+V +VGRRG LQVAFTIKE REM +LP + + G+ +
Sbjct: 211 AALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEA 270
Query: 246 ARPRKRLTELILKTSN--P--DES--KSNCSKYFRPIFLRSPTEFKLNDNG--------A 291
ARPRKRL EL+L+T+ P +E+ +++ S+ + F RSP + + +G A
Sbjct: 271 ARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLA 330
Query: 292 ITGINFANQ--QALVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSCTVIPKEG 345
+T + + +A+ T D E +P G+ SIGY+SR +D +PF+ K V EG
Sbjct: 331 VTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGYKSRPIDPSVPFDPKLGVVPNMEG 386
|
|
| UNIPROTKB|F1NRB1 FDXR "NADPH:adrenodoxin oxidoreductase, mitochondrial" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 824 (295.1 bits), Expect = 1.9e-91, Sum P(2) = 1.9e-91
Identities = 176/345 (51%), Positives = 228/345 (66%)
Query: 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFT 73
P +C+VGSGPAGFY AQ ILK + VDIYEKLPVPFGLVR+GVAPDHPEVKNVINTFT
Sbjct: 12 PRICVVGSGPAGFYTAQHILKHHDLAQVDIYEKLPVPFGLVRFGVAPDHPEVKNVINTFT 71
Query: 74 KTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSF 133
T + R +YGN+ +G+D+++G+L AYHAVVL+YGA++++ L IPGE+ + SAR+F
Sbjct: 72 HTARSDRCAYYGNVTVGRDVTVGELQQAYHAVVLSYGAEDNRVLGIPGENLSGVYSARAF 131
Query: 134 VGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLST 193
VGWYNGLPE+ L L CE A ILG GNVA+D+ARILLSP+D L+ TDIT+ SL L+
Sbjct: 132 VGWYNGLPENRDLKPDLSCETALILGHGNVALDIARILLSPLDFLRKTDITDCSLAALAC 191
Query: 194 SRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLT 253
S++K V L GRRG LQVAFTIKE REM LP Q V G+ A RPRKRLT
Sbjct: 192 SKVKRVWLAGRRGPLQVAFTIKELREMINLPGTQPVLNPADFTGLENAVKDAPRPRKRLT 251
Query: 254 ELILKTS-NPDESKSNCSKYFRPI-----FLRSPTEFKLNDNGA-ITGINFA-------- 298
EL++KT+ K+ ++ P F RSP E +G + G+ A
Sbjct: 252 ELMIKTALEKHREKAVMAQAAVPRQWGLKFQRSPQEVLPTADGMRVRGVRMALTRLEGSG 311
Query: 299 -NQQALVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSCTVIP 342
+ +A+ T D E + G+ SIGY+S +D +PF+ + ++IP
Sbjct: 312 DSAKAVPTGDMEELECGLVLSSIGYRSLPLDPAVPFDTQH-SIIP 355
|
|
| RGD|621648 Fdxr "ferredoxin reductase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 828 (296.5 bits), Expect = 4.9e-91, Sum P(2) = 4.9e-91
Identities = 178/357 (49%), Positives = 240/357 (67%)
Query: 6 YSTISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEV 65
+ST + P +C+VGSGPAGFY AQ +LK ++ VDIYEK VPFGLVR+GVAPDHPEV
Sbjct: 34 FST-QETTPQICVVGSGPAGFYTAQHLLKHHTRAHVDIYEKQLVPFGLVRFGVAPDHPEV 92
Query: 66 KNVINTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGK 125
KNVINTFT+T + R F GN+ +G+D+S+ +L AYHAVVL+YGA++ + L IPGE+
Sbjct: 93 KNVINTFTQTARSDRCAFRGNVVVGRDVSVPELREAYHAVVLSYGAEDHQPLEIPGEELP 152
Query: 126 NIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITE 185
++SAR+FVGWYNGLPE+ L L C+ A ILGQGNVA+DVARILL+P + L+ TDITE
Sbjct: 153 GVVSARAFVGWYNGLPENQKLAPDLSCDTAVILGQGNVALDVARILLTPPEHLEKTDITE 212
Query: 186 HSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATL 245
+L L SR+K+V +VGRRG LQVAFTIKE REM +LP Q + G+ + +
Sbjct: 213 VALGVLRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTQPILDPSDFLGLQDRIKDV 272
Query: 246 ARPRKRLTELILKTSN--P--DES--KSNCSKYFRPIFLRSPTEFKLNDNGA-ITGINFA 298
RPRKRLTEL+L+T+ P +E+ ++ S+ + F RSP + +G + GI A
Sbjct: 273 PRPRKRLTELLLRTATEKPGVEEAARRALASRAWGLRFFRSPQQVLPTPDGRRVAGIRLA 332
Query: 299 ---------NQQALVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSCTVIPK-EG 345
+ +A+ T D E +P G+ S+GY+SR +D +PF+ K +IP EG
Sbjct: 333 VTRLEGVGESTRAVPTGDVEDLPCGLLLSSVGYKSRPIDPSVPFDPK-LGIIPNTEG 388
|
|
| UNIPROTKB|P56522 Fdxr "NADPH:adrenodoxin oxidoreductase, mitochondrial" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 828 (296.5 bits), Expect = 4.9e-91, Sum P(2) = 4.9e-91
Identities = 178/357 (49%), Positives = 240/357 (67%)
Query: 6 YSTISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEV 65
+ST + P +C+VGSGPAGFY AQ +LK ++ VDIYEK VPFGLVR+GVAPDHPEV
Sbjct: 34 FST-QETTPQICVVGSGPAGFYTAQHLLKHHTRAHVDIYEKQLVPFGLVRFGVAPDHPEV 92
Query: 66 KNVINTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGK 125
KNVINTFT+T + R F GN+ +G+D+S+ +L AYHAVVL+YGA++ + L IPGE+
Sbjct: 93 KNVINTFTQTARSDRCAFRGNVVVGRDVSVPELREAYHAVVLSYGAEDHQPLEIPGEELP 152
Query: 126 NIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITE 185
++SAR+FVGWYNGLPE+ L L C+ A ILGQGNVA+DVARILL+P + L+ TDITE
Sbjct: 153 GVVSARAFVGWYNGLPENQKLAPDLSCDTAVILGQGNVALDVARILLTPPEHLEKTDITE 212
Query: 186 HSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATL 245
+L L SR+K+V +VGRRG LQVAFTIKE REM +LP Q + G+ + +
Sbjct: 213 VALGVLRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTQPILDPSDFLGLQDRIKDV 272
Query: 246 ARPRKRLTELILKTSN--P--DES--KSNCSKYFRPIFLRSPTEFKLNDNGA-ITGINFA 298
RPRKRLTEL+L+T+ P +E+ ++ S+ + F RSP + +G + GI A
Sbjct: 273 PRPRKRLTELLLRTATEKPGVEEAARRALASRAWGLRFFRSPQQVLPTPDGRRVAGIRLA 332
Query: 299 ---------NQQALVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSCTVIPK-EG 345
+ +A+ T D E +P G+ S+GY+SR +D +PF+ K +IP EG
Sbjct: 333 VTRLEGVGESTRAVPTGDVEDLPCGLLLSSVGYKSRPIDPSVPFDPK-LGIIPNTEG 388
|
|
| MGI|MGI:104724 Fdxr "ferredoxin reductase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 822 (294.4 bits), Expect = 1.7e-90, Sum P(2) = 1.7e-90
Identities = 177/357 (49%), Positives = 239/357 (66%)
Query: 6 YSTISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEV 65
+ST + P +C+VGSGPAGFY AQ +LK + VDIYEK VPFGLVR+GVAPDHPEV
Sbjct: 34 FST-QEKTPQICVVGSGPAGFYTAQHLLKHHTHAHVDIYEKQLVPFGLVRFGVAPDHPEV 92
Query: 66 KNVINTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGK 125
KNVINTFT+T + R F GN+ +G+D+S+ +L AYHAVVL+YGA++ + L IPGE+
Sbjct: 93 KNVINTFTQTARSDRCAFQGNVVVGRDVSVPELREAYHAVVLSYGAEDHQPLGIPGEELP 152
Query: 126 NIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITE 185
++SAR+FVGWYNGLPE+ L L C+ A ILGQGNVA+DVARILL+P + L+ TDITE
Sbjct: 153 GVVSARAFVGWYNGLPENQELAPDLSCDTAVILGQGNVALDVARILLTPPEHLEKTDITE 212
Query: 186 HSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATL 245
+L L SR+K+V +VGRRG LQVAFTIKE REM +LP + + G+ + +
Sbjct: 213 AALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPILDPSDFLGLQDRIKDV 272
Query: 246 ARPRKRLTELILKTSN--P--DES--KSNCSKYFRPIFLRSPTEFKLNDNGA-ITGINFA 298
RPR+RLTEL+L+T+ P +E+ ++ S+ + F RSP + +G + GI A
Sbjct: 273 PRPRRRLTELLLRTATEKPGVEEAARQALASRAWGLRFFRSPQQVLPTPDGQRVAGIRLA 332
Query: 299 ---------NQQALVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSCTVIPK-EG 345
+ +A+ T D E +P G+ S+GY+SR +D +PF+ K VIP EG
Sbjct: 333 VTSLEGVGESTRAVPTGDVEDLPCGLLLSSVGYKSRPIDPSVPFDPK-LGVIPNTEG 388
|
|
| UNIPROTKB|F1RV70 FDXR "NADPH:adrenodoxin oxidoreductase, mitochondrial" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 820 (293.7 bits), Expect = 5.6e-90, Sum P(2) = 5.6e-90
Identities = 178/367 (48%), Positives = 244/367 (66%)
Query: 3 KRVYSTISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDH 62
++ +ST Q P +C+VGSGPAGFY AQ +LK ++ VDIYEK VPFGLVR+GVAPDH
Sbjct: 29 RQQFSTQEQT-PQICVVGSGPAGFYTAQHLLKHHSRARVDIYEKQLVPFGLVRFGVAPDH 87
Query: 63 PEVKNVINTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGE 122
PEVKNVINTFT+T + R F+GN+ +G+D+++ +L AYHAVVL+YGA++ + L IPGE
Sbjct: 88 PEVKNVINTFTQTARSDRCAFHGNVVVGRDVTVPELQEAYHAVVLSYGAEDHRALEIPGE 147
Query: 123 DGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTD 182
+ + SAR+FVGWYNGLPE+ L L C+ A ILGQGNVA+DVARILL+P + L+ TD
Sbjct: 148 ELPGVFSARAFVGWYNGLPENQELAPDLSCDTAVILGQGNVALDVARILLTPPEHLEKTD 207
Query: 183 ITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEAS 242
ITE +L L SR+K+V +VGRRG LQVAFTIKE REM +LP + + G+ +
Sbjct: 208 ITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPILDPADFLGLQDRI 267
Query: 243 ATLARPRKRLTELILKTSN--P--DES--KSNCSKYFRPIFLRSPTEFKLNDNG------ 290
+ RPRKRL EL+L+T+ P +E+ +++ S+ + F RSP + + +G
Sbjct: 268 KEVPRPRKRLMELLLRTATEKPGAEEAARRASASRAWGLRFSRSPQQVLPSADGRRAAGI 327
Query: 291 --AITGINFANQ--QALVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSCTVIPKEGV 346
A+T + + +A+ T D E +P G+ SIGY+SR +D +PF+ K VIP
Sbjct: 328 RLAVTRLEGVGEATRAVPTGDVEDLPCGLVLSSIGYKSRPIDPSVPFDLK-LGVIPNTEG 386
Query: 347 PVVTWEG 353
VV G
Sbjct: 387 RVVDMPG 393
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9V3T9 | ADRO_DROME | 1, ., 1, 8, ., 1, ., 2 | 0.4758 | 0.9536 | 0.7939 | yes | N/A |
| P08165 | ADRO_BOVIN | 1, ., 1, 8, ., 1, ., 2 | 0.4905 | 0.8969 | 0.7073 | yes | N/A |
| O32886 | FPRA_MYCLE | 1, ., 1, 8, ., 1, ., 2 | 0.3890 | 0.8144 | 0.6929 | yes | N/A |
| Q54KG7 | ADRO_DICDI | 1, ., 1, 8, ., 1, ., 2 | 0.3865 | 0.8530 | 0.6427 | yes | N/A |
| P48360 | ADRO_YEAST | 1, ., 1, 8, ., 1, ., 2 | 0.3704 | 0.7654 | 0.6024 | yes | N/A |
| P56522 | ADRO_RAT | 1, ., 1, 8, ., 1, ., 2 | 0.4819 | 0.8788 | 0.6902 | yes | N/A |
| P22570 | ADRO_HUMAN | 1, ., 1, 8, ., 1, ., 2 | 0.4986 | 0.8762 | 0.6924 | yes | N/A |
| O05783 | FPRA_MYCTU | 1, ., 1, 8, ., 1, ., 2 | 0.3794 | 0.8273 | 0.7039 | yes | N/A |
| O59710 | ADRO_SCHPO | 1, ., 1, 8, ., 1, ., 2 | 0.4026 | 0.9020 | 0.7462 | yes | N/A |
| Q61578 | ADRO_MOUSE | 1, ., 1, 8, ., 1, ., 2 | 0.4344 | 0.9613 | 0.7550 | yes | N/A |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 388 | |||
| PLN02852 | 491 | PLN02852, PLN02852, ferredoxin-NADP+ reductase | 1e-122 | |
| PTZ00188 | 506 | PTZ00188, PTZ00188, adrenodoxin reductase; Provisi | 3e-46 | |
| COG0493 | 457 | COG0493, GltD, NADPH-dependent glutamate synthase | 3e-27 | |
| PRK11749 | 457 | PRK11749, PRK11749, dihydropyrimidine dehydrogenas | 6e-19 | |
| COG0493 | 457 | COG0493, GltD, NADPH-dependent glutamate synthase | 6e-18 | |
| PRK12771 | 564 | PRK12771, PRK12771, putative glutamate synthase (N | 1e-17 | |
| TIGR01316 | 449 | TIGR01316, gltA, glutamate synthase (NADPH), homot | 6e-16 | |
| PRK13984 | 604 | PRK13984, PRK13984, putative oxidoreductase; Provi | 1e-15 | |
| TIGR01318 | 467 | TIGR01318, gltD_gamma_fam, glutamate synthase smal | 5e-15 | |
| PRK12810 | 471 | PRK12810, gltD, glutamate synthase subunit beta; R | 6e-15 | |
| PRK12809 | 639 | PRK12809, PRK12809, putative oxidoreductase Fe-S b | 7e-15 | |
| TIGR01317 | 485 | TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH | 3e-14 | |
| PRK12831 | 464 | PRK12831, PRK12831, putative oxidoreductase; Provi | 5e-13 | |
| PRK12770 | 352 | PRK12770, PRK12770, putative glutamate synthase su | 1e-12 | |
| PRK12814 | 652 | PRK12814, PRK12814, putative NADPH-dependent gluta | 1e-12 | |
| PRK12775 | 1006 | PRK12775, PRK12775, putative trifunctional 2-polyp | 3e-11 | |
| PRK12778 | 752 | PRK12778, PRK12778, putative bifunctional 2-polypr | 5e-10 | |
| PRK12779 | 944 | PRK12779, PRK12779, putative bifunctional glutamat | 4e-09 | |
| PRK12769 | 654 | PRK12769, PRK12769, putative oxidoreductase Fe-S b | 4e-08 | |
| PRK09853 | 1019 | PRK09853, PRK09853, putative selenate reductase su | 3e-07 | |
| TIGR03315 | 1012 | TIGR03315, Se_ygfK, putative selenate reductase, Y | 5e-07 |
| >gnl|CDD|215457 PLN02852, PLN02852, ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Score = 363 bits (933), Expect = e-122
Identities = 181/475 (38%), Positives = 247/475 (52%), Gaps = 96/475 (20%)
Query: 7 STISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVK 66
S+ + +VC+VGSGPAGFY A ++LK + VDI E+LP PFGLVR GVAPDHPE K
Sbjct: 20 SSSTSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETK 79
Query: 67 NVINTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKN 126
NV N F++ + RV+F+GN+ LG+D+SL +L + YH VVL YGA++D++L IPGED
Sbjct: 80 NVTNQFSRVATDDRVSFFGNVTLGRDVSLSELRDLYHVVVLAYGAESDRRLGIPGEDLPG 139
Query: 127 IISARSFVGWYNGLPEDASL--DLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDIT 184
++SAR FV WYNG P+ L DL + A +LGQGNVA+D ARILL P D+L STDI
Sbjct: 140 VLSAREFVWWYNGHPDCVHLPPDLKSS-DTAVVLGQGNVALDCARILLRPTDELASTDIA 198
Query: 185 EHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASAT 244
EH+LE L S ++ V LVGRRG +Q A T KE RE+ L +V+ + L E
Sbjct: 199 EHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPEDEEE 258
Query: 245 LA--RPRKRLTELILKT-SNPDESKSNCSKYFRPIFLRSPTEFKLND--NGAITGINF-- 297
L RP++R+ EL+ K + + S + +F R+PT F + NG + G+
Sbjct: 259 LKASRPKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLER 318
Query: 298 --------ANQQALV-TEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSCTVIP------ 342
+ +Q V T + E +P G+ +SIGY+S VD +PF+ K V+P
Sbjct: 319 TVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYKSLPVDG-LPFDHKR-GVVPNVHGRV 376
Query: 343 ---------KEGVPVVTWE--------GWKAIDKEET--------ERGKLK--------- 368
+ G+ VV W G EET E+G+L+
Sbjct: 377 LSSASGADTEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAEDLEQGRLRGVASPPKPG 436
Query: 369 -----------------------------------GKPREKIISIEEMISVSGNS 388
GKPREKI SIEEM+ +
Sbjct: 437 RDGLLELLESRGVRVVPFSGWEKIDSAEKEAGRARGKPREKITSIEEMLKAANEK 491
|
Length = 491 |
| >gnl|CDD|240308 PTZ00188, PTZ00188, adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Score = 165 bits (418), Expect = 3e-46
Identities = 108/331 (32%), Positives = 167/331 (50%), Gaps = 43/331 (12%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKT 75
V I+G+GP+ YC + +LK + VDI+EKLP P+GL+RYGVAPDH VKN TF
Sbjct: 42 VGIIGAGPSALYCCKHLLKH-ERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPV 100
Query: 76 GDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGA----------DNDKKLNIPGEDGK 125
+P F+GN+ +G D+ + +L N Y+ V+ GA D DK ++ + +
Sbjct: 101 FLSPNYRFFGNVHVGVDLKMEELRNHYNCVIFCCGASEVSIPIGQQDEDKAVSGGETNPR 160
Query: 126 N---IISARSFVGWYNGLPEDA---SLDLSLDCEE----ATILGQGNVAMDVARILLSPV 175
I AR + +YN + D ++D L+ E + I+G GNV++D+ARIL+
Sbjct: 161 KQNGIFHARDLIYFYNNMYNDVRCKAVDNYLNSFENFTTSIIIGNGNVSLDIARILIKSP 220
Query: 176 DQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVF--RNE 233
D L TDI+ L+ + IK + +VGRRG Q +FT E RE+ L + + + +N
Sbjct: 221 DDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQSSFTNAELRELISLENTKVILSKKNY 280
Query: 234 QLCGVHEASATLARPRKRLTELILK-TSNPDESKSNCSKY----------------FRPI 276
LC ++ +KR E+ K N +E + N Y RPI
Sbjct: 281 DLCCHLKSDEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEIRQIRPI 340
Query: 277 --FLRSPTEFKLNDNGAITGINFANQQALVT 305
+++ E +LN N ++ +F + LVT
Sbjct: 341 DGAMKN-VELELNKNVPMSFSSFKENKVLVT 370
|
Length = 506 |
| >gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 3e-27
Identities = 54/205 (26%), Positives = 80/205 (39%), Gaps = 10/205 (4%)
Query: 18 IVGSGP-AGFYCAQQILKLLP--QSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTK 74
+VGSGP A Y A + L + ++ +P P GLVR GV DH +K + T
Sbjct: 10 VVGSGPEAAIYEAARCLDCGDPCITGCPVHNDIPEPIGLVREGV--DHEAIKLIHKTNNL 67
Query: 75 TGDNPRVNFYGNICLGQDISL-GDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSF 133
RV GN+C G + +L A+ G D++ IPGE +
Sbjct: 68 PAITGRVCPLGNLCEGACVLGIEELPVNIGALERAIGDKADREGWIPGELPGSRT--GKK 125
Query: 134 VGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLST 193
V P + L + VA+D +L D DI + LE L
Sbjct: 126 VAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLYGIPDFKLPKDILDRRLELLER 185
Query: 194 SRIKSVNLVGRRGA-LQVAFTIKEF 217
S ++ L R G + + +KE+
Sbjct: 186 SGVE-FKLNVRVGRDITLEELLKEY 209
|
Length = 457 |
| >gnl|CDD|236967 PRK11749, PRK11749, dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Score = 87.5 bits (218), Expect = 6e-19
Identities = 51/161 (31%), Positives = 76/161 (47%), Gaps = 20/161 (12%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPE---VKNV---- 68
V ++G+GPAG A ++ + V I+E GL+RYG+ PE K++
Sbjct: 143 VAVIGAGPAGLTAAHRLARKGYD--VTIFEARDKAGGLLRYGI----PEFRLPKDIVDRE 196
Query: 69 INTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNII 128
+ K G V N +G+DI+L +L Y AV + GA + L IPGE+ +
Sbjct: 197 VERLLKLG----VEIRTNTEVGRDITLDELRAGYDAVFIGTGAGLPRFLGIPGENLGGVY 252
Query: 129 SARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVAR 169
SA F+ N D L + + ++G GN AMD AR
Sbjct: 253 SAVDFLTRVNQAVADYDLPVG---KRVVVIGGGNTAMDAAR 290
|
Length = 457 |
| >gnl|CDD|223567 COG0493, GltD, NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 6e-18
Identities = 49/163 (30%), Positives = 78/163 (47%), Gaps = 18/163 (11%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNV----INT 71
V ++G+GPAG A + + V ++E++ + GL+ YG+ PD K++ +
Sbjct: 126 VAVIGAGPAGLAAADDLSRA--GHDVTVFERVALDGGLLLYGI-PDFKLPKDILDRRLEL 182
Query: 72 FTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISAR 131
++G V F N+ +G+DI+L +L Y AV L GA + L+IPGED K + A
Sbjct: 183 LERSG----VEFKLNVRVGRDITLEELLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFAL 238
Query: 132 SFVGWYNGLPEDASLDLSLDCEEAT-----ILGQGNVAMDVAR 169
F+ N E A ++G G+ AMD A
Sbjct: 239 DFLTRLNK--EVLGDFAEDRTPPAKGKRVVVIGGGDTAMDCAG 279
|
Length = 457 |
| >gnl|CDD|237198 PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 1e-17
Identities = 47/162 (29%), Positives = 74/162 (45%), Gaps = 25/162 (15%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDH--P------EVKN 67
V ++G GPAG A L+ + + V I+E P G++RYG+ P + P E++
Sbjct: 140 VAVIGGGPAGLSAAYH-LRRMGHA-VTIFEAGPKLGGMMRYGI-PAYRLPREVLDAEIQR 196
Query: 68 VINTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNI 127
+++ + RV G+DI+L L + AV + GA K+L IPGED +
Sbjct: 197 ILDLGVEVRLGVRV--------GEDITLEQLEGEFDAVFVAIGAQLGKRLPIPGEDAAGV 248
Query: 128 ISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVAR 169
+ A F+ + ++G GN AMD AR
Sbjct: 249 LDAVDFLRAV----GEGEPPFLGK--RVVVIGGGNTAMDAAR 284
|
Length = 564 |
| >gnl|CDD|130383 TIGR01316, gltA, glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Score = 78.8 bits (194), Expect = 6e-16
Identities = 52/157 (33%), Positives = 82/157 (52%), Gaps = 6/157 (3%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKT 75
V ++G+GPAG CA ++ K +V ++E L P G+V YG+ P+ K ++ T KT
Sbjct: 136 VAVIGAGPAGLACASELAKA--GHSVTVFEALHKPGGVVTYGI-PEFRLPKEIVVTEIKT 192
Query: 76 GDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVG 135
V F N +G+ +L +L + Y AV + GA K +NIPGE+ + SA F+
Sbjct: 193 LKKLGVTFRMNFLVGKTATLEELFSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLT 252
Query: 136 WYNGLP--EDASLDLSLDCEEAT-ILGQGNVAMDVAR 169
N + E D + ++ ++G GN A+D AR
Sbjct: 253 RANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDSAR 289
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH [Amino acid biosynthesis, Glutamate family]. Length = 449 |
| >gnl|CDD|172486 PRK13984, PRK13984, putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 1e-15
Identities = 54/162 (33%), Positives = 76/162 (46%), Gaps = 20/162 (12%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVA----PDHPEVKNVINT 71
V IVGSGPAG A + + + V +YE L P G++RYG+ PD K+ I
Sbjct: 286 VAIVGSGPAGLSAAYFLATMGYE--VTVYESLSKPGGVMRYGIPSYRLPDEALDKD-IAF 342
Query: 72 FTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISA- 130
G V + N +G+DI L +L + AV L+ G + IPG D ++I A
Sbjct: 343 IEALG----VKIHLNTRVGKDIPLEELREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQAL 398
Query: 131 ---RSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVAR 169
R + G + SL ++G GNVAMD+AR
Sbjct: 399 PLLREIRDYLRGEGPKPKIPRSL-----VVIGGGNVAMDIAR 435
|
Length = 604 |
| >gnl|CDD|130385 TIGR01318, gltD_gamma_fam, glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 5e-15
Identities = 53/173 (30%), Positives = 83/173 (47%), Gaps = 19/173 (10%)
Query: 9 ISQLKPN---VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEV 65
+S + P V ++G+GPAG CA + + Q V ++++ P GL+ +G+ +
Sbjct: 134 LSHVVPTGKRVAVIGAGPAGLACADILARAGVQ--VVVFDRHPEIGGLLTFGIPSFKLD- 190
Query: 66 KNVI----NTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPG 121
K V+ FT G + F+ N +G+DISL DL Y AV L G + +PG
Sbjct: 191 KAVLSRRREIFTAMG----IEFHLNCEVGRDISLDDLLEDYDAVFLGVGTYRSMRGGLPG 246
Query: 122 EDGKNIISARSFVGWYN----GLPEDASLDL-SLDCEEATILGQGNVAMDVAR 169
ED ++ A F+ GLPE L ++ + +LG G+ AMD R
Sbjct: 247 EDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAMDCVR 299
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. Length = 467 |
| >gnl|CDD|237213 PRK12810, gltD, glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Score = 75.6 bits (187), Expect = 6e-15
Identities = 41/125 (32%), Positives = 58/125 (46%), Gaps = 17/125 (13%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVK-------NV 68
V +VGSGPAG A Q+ + + TV +E+ GL+RYG+ P+ K
Sbjct: 146 VAVVGSGPAGLAAADQLARAGHKVTV--FERADRIGGLLRYGI----PDFKLEKEVIDRR 199
Query: 69 INTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNII 128
I G + F N+ +G+DI+ +L Y AV L GA + L IPG D +
Sbjct: 200 IELMEAEG----IEFRTNVEVGKDITAEELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVH 255
Query: 129 SARSF 133
A F
Sbjct: 256 FAMDF 260
|
Length = 471 |
| >gnl|CDD|183762 PRK12809, PRK12809, putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Score = 75.8 bits (186), Expect = 7e-15
Identities = 47/168 (27%), Positives = 85/168 (50%), Gaps = 8/168 (4%)
Query: 7 STISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVK 66
S + V ++G+GPAG CA + + Q VD++++ P G++ +G+ P + K
Sbjct: 304 SKVVPRSEKVAVIGAGPAGLGCADILARAGVQ--VDVFDRHPEIGGMLTFGIPPFKLD-K 360
Query: 67 NVINTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKN 126
V++ + ++F+ N +G+DI+ DLT+ Y AV + G + ++P ED
Sbjct: 361 TVLSQRREIFTAMGIDFHLNCEIGRDITFSDLTSEYDAVFIGVGTYGMMRADLPHEDAPG 420
Query: 127 IISARSFVGWYN----GLPEDASLDLS-LDCEEATILGQGNVAMDVAR 169
+I A F+ + GLPE L+ ++ + +LG G+ MD R
Sbjct: 421 VIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMDCLR 468
|
Length = 639 |
| >gnl|CDD|162300 TIGR01317, GOGAT_sm_gam, glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 3e-14
Identities = 43/155 (27%), Positives = 69/155 (44%), Gaps = 7/155 (4%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKT 75
V +VGSGPAG A Q+ + TV ++E+ GL+ YG+ P+ K +++
Sbjct: 146 VAVVGSGPAGLAAADQLNR--AGHTVTVFEREDRCGGLLMYGI-PNMKLDKAIVDRRIDL 202
Query: 76 GDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVG 135
++F N +G DIS +L + AVVL GA + L IPG + K I A F+
Sbjct: 203 LSAEGIDFVTNTEIGVDISADELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLP 262
Query: 136 WYNGLPEDASLD----LSLDCEEATILGQGNVAMD 166
+ ++ ++G G+ D
Sbjct: 263 SATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGAD 297
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. Length = 485 |
| >gnl|CDD|183780 PRK12831, PRK12831, putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 5e-13
Identities = 54/168 (32%), Positives = 81/168 (48%), Gaps = 20/168 (11%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVA----PDHPEVKNVINT 71
V ++GSGPAG CA + K+ V I+E L P G++ YG+ P VK I
Sbjct: 143 VAVIGSGPAGLTCAGDLAKM--GYDVTIFEALHEPGGVLVYGIPEFRLPKETVVKKEIEN 200
Query: 72 FTKTGDNPRVNFYGNICLGQDISLGDLTN--AYHAVVLTYGADNDKKLNIPGEDGKNIIS 129
K G V N+ +G+ +++ +L + AV + GA K + IPGE+ + S
Sbjct: 201 IKKLG----VKIETNVVVGKTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFS 256
Query: 130 ARSFVGWYN----GLPE-DASLDLSLDCEEATILGQGNVAMDVARILL 172
A F+ N PE D + + ++ ++G GNVAMD AR L
Sbjct: 257 ANEFLTRVNLMKAYKPEYDTPIKVG---KKVAVVGGGNVAMDAARTAL 301
|
Length = 464 |
| >gnl|CDD|237197 PRK12770, PRK12770, putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-12
Identities = 48/174 (27%), Positives = 75/174 (43%), Gaps = 27/174 (15%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNV------- 68
V I+G+GPAG A L L V +Y+KLP P GL+ +G+ ++ V
Sbjct: 21 VAIIGAGPAGL-AAAGYLACLGYE-VHVYDKLPEPGGLMLFGIPEFRIPIERVREGVKEL 78
Query: 69 ----INTFTKT---GDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPG 121
+ T+T P G+ + + +SL +L Y AV++ G +KL IPG
Sbjct: 79 EEAGVVFHTRTKVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSRKLGIPG 138
Query: 122 EDGKNIISARSFVGW-----YNGLPEDASLDLSLDCEEATIL--GQGNVAMDVA 168
ED + SA ++ LP + + E ++ G G A+D A
Sbjct: 139 EDLPGVYSALEYLFRIRAAKLGYLPWEKVPPV----EGKKVVVVGAGLTAVDAA 188
|
Length = 352 |
| >gnl|CDD|139246 PRK12814, PRK12814, putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 1e-12
Identities = 48/158 (30%), Positives = 76/158 (48%), Gaps = 11/158 (6%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKT 75
V I+G+GPAG A +L+ V I++ G++RYG+ P ++VI+
Sbjct: 196 VAIIGAGPAGLTAAYYLLRK--GHDVTIFDANEQAGGMMRYGI-PRFRLPESVIDADIAP 252
Query: 76 GDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVG 135
F N G+DI+L +L + AV+L GA K+ IPGE+ +IS F+
Sbjct: 253 LRAMGAEFRFNTVFGRDITLEELQKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFL- 311
Query: 136 WYNGLPEDASLDLSLDCEEATIL-GQGNVAMDVARILL 172
+ +L +L + ++ G GN A+D AR L
Sbjct: 312 ------RNVALGTALHPGKKVVVIGGGNTAIDAARTAL 343
|
Length = 652 |
| >gnl|CDD|183738 PRK12775, PRK12775, putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 65.0 bits (158), Expect = 3e-11
Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 8/160 (5%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKT 75
V I GSGPAG A ++K TV YE L V G+++YG+ P +++I+ +
Sbjct: 433 VAICGSGPAGLAAAADLVKYGVDVTV--YEALHVVGGVLQYGI-PSFRLPRDIIDREVQR 489
Query: 76 GDNPRVNFYGNICLGQDISLGDLTN--AYHAVVLTYGADNDKKLNIPGEDGKNIISARSF 133
+ V N +G+ ++ L N + AV L GA L IPGE + SA F
Sbjct: 490 LVDIGVKIETNKVIGKTFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANEF 549
Query: 134 VGWYNGLPEDA--SLDLSLDCEEATI-LGQGNVAMDVARI 170
+ N + D LD + ++ + +G GN AMD R+
Sbjct: 550 LTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMDCLRV 589
|
Length = 1006 |
| >gnl|CDD|237200 PRK12778, PRK12778, putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 5e-10
Identities = 45/165 (27%), Positives = 75/165 (45%), Gaps = 22/165 (13%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPE-------VKNV 68
V ++GSGPAG A + K V ++E L G+++YG+ PE V
Sbjct: 434 VAVIGSGPAGLSFAGDLAKR--GYDVTVFEALHEIGGVLKYGI----PEFRLPKKIVDVE 487
Query: 69 INTFTKTGDNPRVNFYGNICLGQDISLGDL-TNAYHAVVLTYGADNDKKLNIPGEDGKNI 127
I K G V F ++ +G+ I++ +L + + + GA +NIPGE+ +
Sbjct: 488 IENLKKLG----VKFETDVIVGKTITIEELEEEGFKGIFIASGAGLPNFMNIPGENSNGV 543
Query: 128 ISARSF---VGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVAR 169
+S+ + V + D+ + + A + G GN AMD AR
Sbjct: 544 MSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVV-GGGNTAMDSAR 587
|
Length = 752 |
| >gnl|CDD|183740 PRK12779, PRK12779, putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 4e-09
Identities = 50/169 (29%), Positives = 77/169 (45%), Gaps = 22/169 (13%)
Query: 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPE-------V 65
KP + +VGSGP+G A L + V ++E G++RYG+ PE +
Sbjct: 306 KPPIAVVGSGPSGLINA--YLLAVEGFPVTVFEAFHDLGGVLRYGI----PEFRLPNQLI 359
Query: 66 KNVINTFTKTGDNPRVNFYGNICLGQDISLGDLTNA-YHAVVLTYGADNDKKLNIPGEDG 124
+V+ G F N +G+ +L DL A + + + GA +N+PGE
Sbjct: 360 DDVVEKIKLLGG----RFVKNFVVGKTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHL 415
Query: 125 KNIISARSF---VGWYNGLPEDASLDL-SLDCEEATILGQGNVAMDVAR 169
++SA F V GL +D L + +E ++G GN AMD AR
Sbjct: 416 LGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAMDAAR 464
|
Length = 944 |
| >gnl|CDD|183733 PRK12769, PRK12769, putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 4e-08
Identities = 50/173 (28%), Positives = 76/173 (43%), Gaps = 19/173 (10%)
Query: 9 ISQLKP---NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEV 65
+SQ+ V I+G+GPAG CA + + TV Y++ P GL+ +G+ P
Sbjct: 320 LSQVTKSDKRVAIIGAGPAGLACADVLARNGVAVTV--YDRHPEIGGLLTFGI-PAFKLD 376
Query: 66 KNVI----NTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPG 121
K+++ F+ G + F N +G+DISL L Y AV + G K +P
Sbjct: 377 KSLLARRREIFSAMG----IEFELNCEVGKDISLESLLEDYDAVFVGVGTYRSMKAGLPN 432
Query: 122 EDGKNIISARSFV----GWYNGLPE-DASLDLSLDCEEATILGQGNVAMDVAR 169
ED + A F+ GL E ++ +LG G+ AMD R
Sbjct: 433 EDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAMDCVR 485
|
Length = 654 |
| >gnl|CDD|236630 PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 41/166 (24%), Positives = 69/166 (41%), Gaps = 28/166 (16%)
Query: 13 KPNVCIVGSGPAG----FYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDH----PE 64
+ V ++G+GPAG ++ A+ V ++E+ G+V+ + P
Sbjct: 539 RKKVAVIGAGPAGLAAAYFLARAGHP------VTVFEREENAGGVVKN-IIPQFRIPAEL 591
Query: 65 VKNVINTFTKTGDNPRVNFYGNICLGQDISLGDLTNA-YHAVVLTYGADNDKKLNIPGED 123
+++ I G V F D+++ L N Y VV+ GAD + L + G
Sbjct: 592 IQHDIEFVKAHG----VKFEFGC--SPDLTVEQLKNEGYDYVVVAIGADKNGGLKLEG-G 644
Query: 124 GKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVAR 169
+N+I A F+ Y L + ++G GN AMD AR
Sbjct: 645 NQNVIKALPFLEEYKNKGTALKLG-----KHVVVVGGGNTAMDAAR 685
|
Length = 1019 |
| >gnl|CDD|132358 TIGR03315, Se_ygfK, putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 5e-07
Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 24/164 (14%)
Query: 13 KPNVCIVGSGPAGFYCAQQILKL-LPQSTVDIYEKLPVPFGLVRYGVAPDH--PE--VKN 67
V ++G+GPAG + + P V ++EK P G+V+ + P+ ++
Sbjct: 537 AHKVAVIGAGPAGLSAGYFLARAGHP---VTVFEKKEKPGGVVKN-IIPEFRISAESIQK 592
Query: 68 VINTFTKTGDNPRVNF-YGNICLGQDISLGDLTNA-YHAVVLTYGADNDKKLNIPGEDGK 125
I G V F YG D+++ +L N Y V+L GA L + G G+
Sbjct: 593 DIELVKFHG----VEFKYG---CSPDLTVAELKNQGYKYVILAIGAWKHGPLRLEG-GGE 644
Query: 126 NIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVAR 169
++ + F+ + P L + ++G GN AMD AR
Sbjct: 645 RVLKSLEFLRAFKEGPTINPLG-----KHVVVVGGGNTAMDAAR 683
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. Length = 1012 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 388 | |||
| KOG1800|consensus | 468 | 100.0 | ||
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 100.0 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 100.0 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 100.0 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 100.0 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 100.0 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 99.98 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 99.97 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 99.97 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 99.97 | |
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 99.97 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 99.97 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 99.97 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 99.97 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 99.96 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 99.96 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 99.96 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 99.95 | |
| PRK06370 | 463 | mercuric reductase; Validated | 99.95 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 99.95 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 99.95 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 99.95 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 99.95 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 99.94 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 99.94 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 99.94 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 99.94 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 99.94 | |
| PRK06116 | 450 | glutathione reductase; Validated | 99.94 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 99.94 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 99.94 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 99.94 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 99.94 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 99.94 | |
| PLN02507 | 499 | glutathione reductase | 99.94 | |
| PLN02546 | 558 | glutathione reductase | 99.93 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 99.93 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 99.93 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 99.93 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 99.93 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 99.93 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 99.93 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 99.93 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 99.93 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 99.93 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 99.92 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 99.92 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 99.92 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 99.92 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 99.92 | |
| PRK07846 | 451 | mycothione reductase; Reviewed | 99.92 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 99.92 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 99.92 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 99.92 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 99.92 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 99.91 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 99.91 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 99.91 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 99.91 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 99.91 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 99.91 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 99.91 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 99.91 | |
| KOG0404|consensus | 322 | 99.91 | ||
| KOG0399|consensus | 2142 | 99.91 | ||
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 99.91 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 99.9 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 99.9 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 99.9 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 99.9 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 99.9 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 99.89 | |
| KOG1336|consensus | 478 | 99.89 | ||
| KOG1335|consensus | 506 | 99.89 | ||
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 99.88 | |
| COG3634 | 520 | AhpF Alkyl hydroperoxide reductase, large subunit | 99.88 | |
| KOG0405|consensus | 478 | 99.87 | ||
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 99.85 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 99.85 | |
| KOG1399|consensus | 448 | 99.85 | ||
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 99.84 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 99.82 | |
| COG3486 | 436 | IucD Lysine/ornithine N-monooxygenase [Secondary m | 99.81 | |
| KOG4716|consensus | 503 | 99.79 | ||
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 99.77 | |
| KOG2495|consensus | 491 | 99.73 | ||
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 99.6 | |
| KOG1346|consensus | 659 | 99.42 | ||
| PRK09897 | 534 | hypothetical protein; Provisional | 99.22 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 99.13 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 99.13 | |
| KOG2755|consensus | 334 | 99.12 | ||
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 99.08 | |
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 99.03 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 98.93 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 98.88 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 98.72 | |
| PRK05329 | 422 | anaerobic glycerol-3-phosphate dehydrogenase subun | 98.62 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 98.61 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 98.58 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 98.5 | |
| PF13450 | 68 | NAD_binding_8: NAD(P)-binding Rossmann-like domain | 98.49 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 98.49 | |
| PF00070 | 80 | Pyr_redox: Pyridine nucleotide-disulphide oxidored | 98.48 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 98.47 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 98.45 | |
| COG1249 | 454 | Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, | 98.43 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 98.43 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 98.42 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 98.42 | |
| PRK12842 | 574 | putative succinate dehydrogenase; Reviewed | 98.4 | |
| PLN02463 | 447 | lycopene beta cyclase | 98.38 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 98.36 | |
| PLN02661 | 357 | Putative thiazole synthesis | 98.33 | |
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 98.29 | |
| PRK07251 | 438 | pyridine nucleotide-disulfide oxidoreductase; Prov | 98.27 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 98.23 | |
| PRK07843 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 98.22 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 98.21 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.21 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 98.2 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 98.19 | |
| TIGR03378 | 419 | glycerol3P_GlpB glycerol-3-phosphate dehydrogenase | 98.17 | |
| KOG0029|consensus | 501 | 98.16 | ||
| PRK06184 | 502 | hypothetical protein; Provisional | 98.16 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 98.13 | |
| PRK06912 | 458 | acoL dihydrolipoamide dehydrogenase; Validated | 98.12 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.12 | |
| PRK05976 | 472 | dihydrolipoamide dehydrogenase; Validated | 98.12 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 98.12 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 98.12 | |
| COG0579 | 429 | Predicted dehydrogenase [General function predicti | 98.11 | |
| PRK04965 | 377 | NADH:flavorubredoxin oxidoreductase; Provisional | 98.1 | |
| PRK06416 | 462 | dihydrolipoamide dehydrogenase; Reviewed | 98.1 | |
| TIGR01350 | 461 | lipoamide_DH dihydrolipoamide dehydrogenase. The m | 98.1 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 98.1 | |
| PRK09754 | 396 | phenylpropionate dioxygenase ferredoxin reductase | 98.08 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 98.08 | |
| PRK13512 | 438 | coenzyme A disulfide reductase; Provisional | 98.08 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 98.06 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 98.06 | |
| PRK09564 | 444 | coenzyme A disulfide reductase; Reviewed | 98.05 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 98.04 | |
| TIGR03385 | 427 | CoA_CoA_reduc CoA-disulfide reductase. Members of | 98.04 | |
| PRK07208 | 479 | hypothetical protein; Provisional | 98.02 | |
| TIGR01421 | 450 | gluta_reduc_1 glutathione-disulfide reductase, ani | 98.01 | |
| PRK08010 | 441 | pyridine nucleotide-disulfide oxidoreductase; Prov | 98.01 | |
| COG1233 | 487 | Phytoene dehydrogenase and related proteins [Secon | 98.01 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 98.01 | |
| TIGR01424 | 446 | gluta_reduc_2 glutathione-disulfide reductase, pla | 98.01 | |
| COG3380 | 331 | Predicted NAD/FAD-dependent oxidoreductase [Genera | 98.0 | |
| PRK05249 | 461 | soluble pyridine nucleotide transhydrogenase; Prov | 98.0 | |
| TIGR02053 | 463 | MerA mercuric reductase. This model represents the | 98.0 | |
| PRK06370 | 463 | mercuric reductase; Validated | 97.98 | |
| PRK11728 | 393 | hydroxyglutarate oxidase; Provisional | 97.98 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 97.98 | |
| PRK11883 | 451 | protoporphyrinogen oxidase; Reviewed | 97.97 | |
| PRK08401 | 466 | L-aspartate oxidase; Provisional | 97.96 | |
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.96 | |
| PLN02507 | 499 | glutathione reductase | 97.96 | |
| PRK06116 | 450 | glutathione reductase; Validated | 97.96 | |
| PRK06327 | 475 | dihydrolipoamide dehydrogenase; Validated | 97.96 | |
| PRK07818 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 97.95 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 97.95 | |
| PRK14694 | 468 | putative mercuric reductase; Provisional | 97.95 | |
| COG1232 | 444 | HemY Protoporphyrinogen oxidase [Coenzyme metaboli | 97.94 | |
| COG1252 | 405 | Ndh NADH dehydrogenase, FAD-containing subunit [En | 97.93 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 97.92 | |
| PRK07845 | 466 | flavoprotein disulfide reductase; Reviewed | 97.92 | |
| KOG2415|consensus | 621 | 97.9 | ||
| PRK07846 | 451 | mycothione reductase; Reviewed | 97.9 | |
| TIGR00562 | 462 | proto_IX_ox protoporphyrinogen oxidase. This prote | 97.89 | |
| PLN02576 | 496 | protoporphyrinogen oxidase | 97.89 | |
| PRK06115 | 466 | dihydrolipoamide dehydrogenase; Reviewed | 97.88 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 97.87 | |
| PRK13748 | 561 | putative mercuric reductase; Provisional | 97.87 | |
| KOG1335|consensus | 506 | 97.87 | ||
| PLN02268 | 435 | probable polyamine oxidase | 97.87 | |
| COG3349 | 485 | Uncharacterized conserved protein [Function unknow | 97.87 | |
| PRK14727 | 479 | putative mercuric reductase; Provisional | 97.86 | |
| PRK07233 | 434 | hypothetical protein; Provisional | 97.86 | |
| KOG3851|consensus | 446 | 97.85 | ||
| PTZ00318 | 424 | NADH dehydrogenase-like protein; Provisional | 97.84 | |
| TIGR01423 | 486 | trypano_reduc trypanothione-disulfide reductase. T | 97.84 | |
| COG0446 | 415 | HcaD Uncharacterized NAD(FAD)-dependent dehydrogen | 97.82 | |
| PRK14989 | 847 | nitrite reductase subunit NirD; Provisional | 97.81 | |
| TIGR03452 | 452 | mycothione_red mycothione reductase. Mycothiol, a | 97.8 | |
| TIGR01292 | 300 | TRX_reduct thioredoxin-disulfide reductase. This m | 97.8 | |
| TIGR02374 | 785 | nitri_red_nirB nitrite reductase [NAD(P)H], large | 97.79 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 97.78 | |
| TIGR01438 | 484 | TGR thioredoxin and glutathione reductase selenopr | 97.78 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.78 | |
| TIGR02733 | 492 | desat_CrtD C-3',4' desaturase CrtD. Members of thi | 97.78 | |
| PRK06467 | 471 | dihydrolipoamide dehydrogenase; Reviewed | 97.77 | |
| PTZ00058 | 561 | glutathione reductase; Provisional | 97.77 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 97.77 | |
| TIGR00031 | 377 | UDP-GALP_mutase UDP-galactopyranose mutase. The ge | 97.77 | |
| PRK12416 | 463 | protoporphyrinogen oxidase; Provisional | 97.76 | |
| PRK05945 | 575 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.75 | |
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 97.75 | |
| PTZ00052 | 499 | thioredoxin reductase; Provisional | 97.74 | |
| PRK06292 | 460 | dihydrolipoamide dehydrogenase; Validated | 97.73 | |
| TIGR02734 | 502 | crtI_fam phytoene desaturase. Phytoene is converte | 97.72 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 97.72 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 97.71 | |
| PLN02568 | 539 | polyamine oxidase | 97.71 | |
| PTZ00153 | 659 | lipoamide dehydrogenase; Provisional | 97.71 | |
| PLN02546 | 558 | glutathione reductase | 97.71 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 97.69 | |
| TIGR02731 | 453 | phytoene_desat phytoene desaturase. Plants and cya | 97.68 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 97.67 | |
| PRK08013 | 400 | oxidoreductase; Provisional | 97.66 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 97.65 | |
| KOG1276|consensus | 491 | 97.65 | ||
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 97.64 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 97.63 | |
| TIGR02730 | 493 | carot_isom carotene isomerase. Members of this fam | 97.63 | |
| PRK13977 | 576 | myosin-cross-reactive antigen; Provisional | 97.63 | |
| PRK06263 | 543 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.63 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 97.63 | |
| PRK10262 | 321 | thioredoxin reductase; Provisional | 97.61 | |
| KOG1336|consensus | 478 | 97.61 | ||
| COG2081 | 408 | Predicted flavoproteins [General function predicti | 97.59 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 97.58 | |
| PLN02529 | 738 | lysine-specific histone demethylase 1 | 97.57 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 97.57 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 97.57 | |
| PRK05868 | 372 | hypothetical protein; Validated | 97.56 | |
| PLN02676 | 487 | polyamine oxidase | 97.56 | |
| KOG0685|consensus | 498 | 97.55 | ||
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 97.55 | |
| PF13738 | 203 | Pyr_redox_3: Pyridine nucleotide-disulphide oxidor | 97.55 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 97.53 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 97.53 | |
| PRK06847 | 375 | hypothetical protein; Provisional | 97.52 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 97.52 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 97.52 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 97.52 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 97.5 | |
| TIGR03169 | 364 | Nterm_to_SelD pyridine nucleotide-disulfide oxidor | 97.5 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 97.5 | |
| TIGR02732 | 474 | zeta_caro_desat carotene 7,8-desaturase. Carotene | 97.49 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 97.48 | |
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 97.48 | |
| COG1231 | 450 | Monoamine oxidase [Amino acid transport and metabo | 97.46 | |
| PLN02487 | 569 | zeta-carotene desaturase | 97.46 | |
| PLN02328 | 808 | lysine-specific histone demethylase 1 homolog | 97.46 | |
| COG2907 | 447 | Predicted NAD/FAD-binding protein [General functio | 97.44 | |
| TIGR00292 | 254 | thiazole biosynthesis enzyme. This enzyme is invol | 97.44 | |
| PF07992 | 201 | Pyr_redox_2: Pyridine nucleotide-disulphide oxidor | 97.44 | |
| PLN02172 | 461 | flavin-containing monooxygenase FMO GS-OX | 97.43 | |
| PF03486 | 409 | HI0933_like: HI0933-like protein; InterPro: IPR004 | 97.43 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 97.42 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 97.4 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 97.39 | |
| PLN02612 | 567 | phytoene desaturase | 97.39 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 97.39 | |
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 97.38 | |
| PRK04176 | 257 | ribulose-1,5-biphosphate synthetase; Provisional | 97.38 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 97.38 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 97.37 | |
| PRK08274 | 466 | tricarballylate dehydrogenase; Validated | 97.36 | |
| COG0562 | 374 | Glf UDP-galactopyranose mutase [Cell envelope biog | 97.36 | |
| PRK05335 | 436 | tRNA (uracil-5-)-methyltransferase Gid; Reviewed | 97.36 | |
| PRK12409 | 410 | D-amino acid dehydrogenase small subunit; Provisio | 97.35 | |
| KOG2404|consensus | 477 | 97.33 | ||
| PLN02985 | 514 | squalene monooxygenase | 97.33 | |
| PF13454 | 156 | NAD_binding_9: FAD-NAD(P)-binding | 97.32 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 97.31 | |
| PRK11259 | 376 | solA N-methyltryptophan oxidase; Provisional | 97.3 | |
| PTZ00367 | 567 | squalene epoxidase; Provisional | 97.29 | |
| PTZ00363 | 443 | rab-GDP dissociation inhibitor; Provisional | 97.29 | |
| PF01134 | 392 | GIDA: Glucose inhibited division protein A; InterP | 97.29 | |
| PF04820 | 454 | Trp_halogenase: Tryptophan halogenase; InterPro: I | 97.27 | |
| PRK07121 | 492 | hypothetical protein; Validated | 97.27 | |
| PRK12266 | 508 | glpD glycerol-3-phosphate dehydrogenase; Reviewed | 97.25 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 97.25 | |
| TIGR01377 | 380 | soxA_mon sarcosine oxidase, monomeric form. Sarcos | 97.25 | |
| TIGR02032 | 295 | GG-red-SF geranylgeranyl reductase family. This mo | 97.23 | |
| PRK09078 | 598 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.22 | |
| PRK07236 | 386 | hypothetical protein; Provisional | 97.21 | |
| PLN03000 | 881 | amine oxidase | 97.2 | |
| PRK13369 | 502 | glycerol-3-phosphate dehydrogenase; Provisional | 97.2 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 97.19 | |
| TIGR03364 | 365 | HpnW_proposed FAD dependent oxidoreductase TIGR033 | 97.19 | |
| PRK08641 | 589 | sdhA succinate dehydrogenase flavoprotein subunit; | 97.19 | |
| COG0665 | 387 | DadA Glycine/D-amino acid oxidases (deaminating) [ | 97.18 | |
| KOG2820|consensus | 399 | 97.18 | ||
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 97.17 | |
| KOG2495|consensus | 491 | 97.17 | ||
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 97.16 | |
| PRK05257 | 494 | malate:quinone oxidoreductase; Validated | 97.16 | |
| PF01494 | 356 | FAD_binding_3: FAD binding domain; InterPro: IPR00 | 97.16 | |
| PRK12837 | 513 | 3-ketosteroid-delta-1-dehydrogenase; Provisional | 97.15 | |
| PLN02976 | 1713 | amine oxidase | 97.15 | |
| COG0644 | 396 | FixC Dehydrogenases (flavoproteins) [Energy produc | 97.15 | |
| TIGR01320 | 483 | mal_quin_oxido malate:quinone-oxidoreductase. This | 97.14 | |
| PRK07045 | 388 | putative monooxygenase; Reviewed | 97.14 | |
| PRK12834 | 549 | putative FAD-binding dehydrogenase; Reviewed | 97.14 | |
| TIGR00137 | 433 | gid_trmFO tRNA:m(5)U-54 methyltransferase. This mo | 97.12 | |
| KOG0405|consensus | 478 | 97.12 | ||
| PRK06996 | 398 | hypothetical protein; Provisional | 97.07 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 97.06 | |
| COG0029 | 518 | NadB Aspartate oxidase [Coenzyme metabolism] | 97.05 | |
| PRK12835 | 584 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 97.04 | |
| COG0493 | 457 | GltD NADPH-dependent glutamate synthase beta chain | 97.02 | |
| COG2072 | 443 | TrkA Predicted flavoprotein involved in K+ transpo | 97.02 | |
| PRK12839 | 572 | hypothetical protein; Provisional | 97.01 | |
| PRK12844 | 557 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 97.0 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 97.0 | |
| PRK05868 | 372 | hypothetical protein; Validated | 97.0 | |
| TIGR02462 | 544 | pyranose_ox pyranose oxidase. Pyranose oxidase (al | 97.0 | |
| PLN02463 | 447 | lycopene beta cyclase | 96.99 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 96.98 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 96.98 | |
| PRK07057 | 591 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.98 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 96.97 | |
| PRK07803 | 626 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.96 | |
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.96 | |
| PTZ00139 | 617 | Succinate dehydrogenase [ubiquinone] flavoprotein | 96.95 | |
| TIGR01373 | 407 | soxB sarcosine oxidase, beta subunit family, heter | 96.95 | |
| TIGR03329 | 460 | Phn_aa_oxid putative aminophosphonate oxidoreducta | 96.95 | |
| PRK12845 | 564 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 96.95 | |
| KOG2614|consensus | 420 | 96.94 | ||
| PRK08958 | 588 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.94 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 96.92 | |
| TIGR01316 | 449 | gltA glutamate synthase (NADPH), homotetrameric. T | 96.92 | |
| PRK13339 | 497 | malate:quinone oxidoreductase; Reviewed | 96.91 | |
| PLN00128 | 635 | Succinate dehydrogenase [ubiquinone] flavoprotein | 96.9 | |
| PRK07364 | 415 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 96.89 | |
| COG3573 | 552 | Predicted oxidoreductase [General function predict | 96.89 | |
| PRK10157 | 428 | putative oxidoreductase FixC; Provisional | 96.88 | |
| PTZ00383 | 497 | malate:quinone oxidoreductase; Provisional | 96.88 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.88 | |
| PRK06069 | 577 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.86 | |
| PRK09853 | 1019 | putative selenate reductase subunit YgfK; Provisio | 96.86 | |
| PRK08773 | 392 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 96.85 | |
| PF00732 | 296 | GMC_oxred_N: GMC oxidoreductase; InterPro: IPR0001 | 96.84 | |
| COG1148 | 622 | HdrA Heterodisulfide reductase, subunit A and rela | 96.83 | |
| PLN02815 | 594 | L-aspartate oxidase | 96.83 | |
| PLN02464 | 627 | glycerol-3-phosphate dehydrogenase | 96.83 | |
| PRK06834 | 488 | hypothetical protein; Provisional | 96.83 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 96.8 | |
| PRK06184 | 502 | hypothetical protein; Provisional | 96.79 | |
| PF06100 | 500 | Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross | 96.78 | |
| PRK07588 | 391 | hypothetical protein; Provisional | 96.77 | |
| PRK12770 | 352 | putative glutamate synthase subunit beta; Provisio | 96.77 | |
| PRK12831 | 464 | putative oxidoreductase; Provisional | 96.76 | |
| PRK06134 | 581 | putative FAD-binding dehydrogenase; Reviewed | 96.75 | |
| TIGR01176 | 580 | fum_red_Fp fumarate reductase, flavoprotein subuni | 96.74 | |
| PTZ00306 | 1167 | NADH-dependent fumarate reductase; Provisional | 96.74 | |
| PRK12779 | 944 | putative bifunctional glutamate synthase subunit b | 96.73 | |
| PRK09231 | 582 | fumarate reductase flavoprotein subunit; Validated | 96.73 | |
| PRK06753 | 373 | hypothetical protein; Provisional | 96.7 | |
| COG4529 | 474 | Uncharacterized protein conserved in bacteria [Fun | 96.69 | |
| PRK08071 | 510 | L-aspartate oxidase; Provisional | 96.69 | |
| PRK08626 | 657 | fumarate reductase flavoprotein subunit; Provision | 96.68 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 96.68 | |
| PRK06475 | 400 | salicylate hydroxylase; Provisional | 96.67 | |
| PRK07395 | 553 | L-aspartate oxidase; Provisional | 96.67 | |
| PLN02697 | 529 | lycopene epsilon cyclase | 96.67 | |
| COG0654 | 387 | UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and | 96.66 | |
| KOG2960|consensus | 328 | 96.65 | ||
| PRK08163 | 396 | salicylate hydroxylase; Provisional | 96.65 | |
| PRK11445 | 351 | putative oxidoreductase; Provisional | 96.64 | |
| PRK09897 | 534 | hypothetical protein; Provisional | 96.63 | |
| PRK07608 | 388 | ubiquinone biosynthesis hydroxylase family protein | 96.63 | |
| PRK12843 | 578 | putative FAD-binding dehydrogenase; Reviewed | 96.62 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.62 | |
| PRK09077 | 536 | L-aspartate oxidase; Provisional | 96.61 | |
| PRK10015 | 429 | oxidoreductase; Provisional | 96.59 | |
| PRK07333 | 403 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 96.59 | |
| TIGR01811 | 603 | sdhA_Bsu succinate dehydrogenase or fumarate reduc | 96.57 | |
| COG1635 | 262 | THI4 Ribulose 1,5-bisphosphate synthetase, convert | 96.57 | |
| TIGR01813 | 439 | flavo_cyto_c flavocytochrome c. This model describ | 96.55 | |
| TIGR02061 | 614 | aprA adenosine phosphosulphate reductase, alpha su | 96.55 | |
| TIGR01790 | 388 | carotene-cycl lycopene cyclase family protein. Thi | 96.54 | |
| KOG2311|consensus | 679 | 96.53 | ||
| PRK08205 | 583 | sdhA succinate dehydrogenase flavoprotein subunit; | 96.52 | |
| KOG3923|consensus | 342 | 96.51 | ||
| PRK11749 | 457 | dihydropyrimidine dehydrogenase subunit A; Provisi | 96.51 | |
| PRK06185 | 407 | hypothetical protein; Provisional | 96.5 | |
| PRK05192 | 618 | tRNA uridine 5-carboxymethylaminomethyl modificati | 96.5 | |
| PRK09126 | 392 | hypothetical protein; Provisional | 96.46 | |
| TIGR01988 | 385 | Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub | 96.42 | |
| PRK08020 | 391 | ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquin | 96.41 | |
| COG3075 | 421 | GlpB Anaerobic glycerol-3-phosphate dehydrogenase | 96.39 | |
| TIGR01984 | 382 | UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T | 96.39 | |
| PRK08132 | 547 | FAD-dependent oxidoreductase; Provisional | 96.39 | |
| PRK08244 | 493 | hypothetical protein; Provisional | 96.38 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.38 | |
| PRK08849 | 384 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 96.37 | |
| KOG1399|consensus | 448 | 96.36 | ||
| COG1053 | 562 | SdhA Succinate dehydrogenase/fumarate reductase, f | 96.36 | |
| PLN02852 | 491 | ferredoxin-NADP+ reductase | 96.36 | |
| TIGR03143 | 555 | AhpF_homolog putative alkyl hydroperoxide reductas | 96.35 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 96.33 | |
| PRK06183 | 538 | mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va | 96.32 | |
| PRK12778 | 752 | putative bifunctional 2-polyprenylphenol hydroxyla | 96.29 | |
| PRK07538 | 413 | hypothetical protein; Provisional | 96.29 | |
| PTZ00188 | 506 | adrenodoxin reductase; Provisional | 96.27 | |
| TIGR00136 | 617 | gidA glucose-inhibited division protein A. GidA, t | 96.25 | |
| TIGR01317 | 485 | GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal | 96.24 | |
| PRK05714 | 405 | 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy | 96.23 | |
| PRK02106 | 560 | choline dehydrogenase; Validated | 96.22 | |
| PRK06126 | 545 | hypothetical protein; Provisional | 96.21 | |
| PF01266 | 358 | DAO: FAD dependent oxidoreductase; InterPro: IPR00 | 96.21 | |
| KOG1298|consensus | 509 | 96.2 | ||
| PRK08013 | 400 | oxidoreductase; Provisional | 96.19 | |
| COG0578 | 532 | GlpA Glycerol-3-phosphate dehydrogenase [Energy pr | 96.12 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.12 | |
| PRK07190 | 487 | hypothetical protein; Provisional | 96.09 | |
| PF12831 | 428 | FAD_oxidored: FAD dependent oxidoreductase; PDB: 3 | 96.07 | |
| PRK00711 | 416 | D-amino acid dehydrogenase small subunit; Validate | 96.06 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 96.06 | |
| KOG1346|consensus | 659 | 96.06 | ||
| TIGR03219 | 414 | salicylate_mono salicylate 1-monooxygenase. Member | 96.04 | |
| COG2509 | 486 | Uncharacterized FAD-dependent dehydrogenases [Gene | 96.03 | |
| PRK08243 | 392 | 4-hydroxybenzoate 3-monooxygenase; Validated | 96.01 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 96.01 | |
| TIGR03315 | 1012 | Se_ygfK putative selenate reductase, YgfK subunit. | 96.01 | |
| PLN02985 | 514 | squalene monooxygenase | 95.99 | |
| PLN02661 | 357 | Putative thiazole synthesis | 95.99 | |
| PRK12810 | 471 | gltD glutamate synthase subunit beta; Reviewed | 95.94 | |
| PRK06481 | 506 | fumarate reductase flavoprotein subunit; Validated | 95.91 | |
| PRK06567 | 1028 | putative bifunctional glutamate synthase subunit b | 95.89 | |
| PRK08850 | 405 | 2-octaprenyl-6-methoxyphenol hydroxylase; Validate | 95.86 | |
| PRK07121 | 492 | hypothetical protein; Validated | 95.85 | |
| PRK07512 | 513 | L-aspartate oxidase; Provisional | 95.83 | |
| PRK07494 | 388 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio | 95.8 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 95.78 | |
| KOG4254|consensus | 561 | 95.77 | ||
| PRK06617 | 374 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 95.77 | |
| PF05834 | 374 | Lycopene_cycl: Lycopene cyclase protein; InterPro: | 95.76 | |
| COG2303 | 542 | BetA Choline dehydrogenase and related flavoprotei | 95.75 | |
| PRK06996 | 398 | hypothetical protein; Provisional | 95.72 | |
| TIGR02023 | 388 | BchP-ChlP geranylgeranyl reductase. This model rep | 95.71 | |
| TIGR01789 | 370 | lycopene_cycl lycopene cyclase. This model represe | 95.68 | |
| PRK12775 | 1006 | putative trifunctional 2-polyprenylphenol hydroxyl | 95.65 | |
| PF00743 | 531 | FMO-like: Flavin-binding monooxygenase-like; Inter | 95.64 | |
| KOG2665|consensus | 453 | 95.54 | ||
| TIGR02028 | 398 | ChlP geranylgeranyl reductase. This model represen | 95.53 | |
| PF13434 | 341 | K_oxygenase: L-lysine 6-monooxygenase (NADPH-requi | 95.52 | |
| PRK05732 | 395 | 2-octaprenyl-6-methoxyphenyl hydroxylase; Validate | 95.49 | |
| TIGR01810 | 532 | betA choline dehydrogenase. This enzyme is a membe | 95.49 | |
| PF00890 | 417 | FAD_binding_2: FAD binding domain of the Pfam fami | 95.48 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 95.46 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 95.45 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 95.39 | |
| PRK12835 | 584 | 3-ketosteroid-delta-1-dehydrogenase; Reviewed | 95.39 | |
| TIGR01372 | 985 | soxA sarcosine oxidase, alpha subunit family, hete | 95.27 | |
| PRK08274 | 466 | tricarballylate dehydrogenase; Validated | 95.27 | |
| PLN02785 | 587 | Protein HOTHEAD | 95.25 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 95.21 | |
| COG1086 | 588 | Predicted nucleoside-diphosphate sugar epimerases | 95.19 | |
| COG0492 | 305 | TrxB Thioredoxin reductase [Posttranslational modi | 95.17 | |
| PRK11101 | 546 | glpA sn-glycerol-3-phosphate dehydrogenase subunit | 95.16 | |
| KOG1238|consensus | 623 | 95.14 | ||
| KOG2853|consensus | 509 | 95.08 | ||
| TIGR02485 | 432 | CobZ_N-term precorrin 3B synthase CobZ. CobZ is es | 95.02 | |
| TIGR01989 | 437 | COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. T | 94.96 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 94.94 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 94.85 | |
| PF01946 | 230 | Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K. | 94.82 | |
| TIGR01811 | 603 | sdhA_Bsu succinate dehydrogenase or fumarate reduc | 94.79 | |
| COG1251 | 793 | NirB NAD(P)H-nitrite reductase [Energy production | 94.76 | |
| PRK06175 | 433 | L-aspartate oxidase; Provisional | 94.76 | |
| TIGR00551 | 488 | nadB L-aspartate oxidase. L-aspartate oxidase is t | 94.73 | |
| TIGR00275 | 400 | flavoprotein, HI0933 family. The model when search | 94.7 | |
| PF06039 | 488 | Mqo: Malate:quinone oxidoreductase (Mqo); InterPro | 94.68 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 94.68 | |
| TIGR02360 | 390 | pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. | 94.65 | |
| PRK08205 | 583 | sdhA succinate dehydrogenase flavoprotein subunit; | 94.62 | |
| KOG4716|consensus | 503 | 94.62 | ||
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 94.52 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 94.51 | |
| PLN00093 | 450 | geranylgeranyl diphosphate reductase; Provisional | 94.46 | |
| TIGR01812 | 566 | sdhA_frdA_Gneg succinate dehydrogenase or fumarate | 94.43 | |
| PRK06854 | 608 | adenylylsulfate reductase subunit alpha; Validated | 94.43 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 94.38 | |
| PRK08275 | 554 | putative oxidoreductase; Provisional | 94.36 | |
| PRK07804 | 541 | L-aspartate oxidase; Provisional | 94.32 | |
| KOG2852|consensus | 380 | 94.29 | ||
| COG0445 | 621 | GidA Flavin-dependent tRNA uridine 5-carboxymethyl | 94.24 | |
| PRK08641 | 589 | sdhA succinate dehydrogenase flavoprotein subunit; | 94.21 | |
| PRK08294 | 634 | phenol 2-monooxygenase; Provisional | 94.17 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 94.13 | |
| PRK13984 | 604 | putative oxidoreductase; Provisional | 94.12 | |
| PRK08958 | 588 | sdhA succinate dehydrogenase flavoprotein subunit; | 93.96 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 93.79 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 93.74 | |
| KOG3851|consensus | 446 | 93.68 | ||
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 93.62 | |
| KOG2404|consensus | 477 | 93.58 | ||
| PRK06452 | 566 | sdhA succinate dehydrogenase flavoprotein subunit; | 93.53 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 93.47 | |
| PTZ00367 | 567 | squalene epoxidase; Provisional | 93.46 | |
| PLN02927 | 668 | antheraxanthin epoxidase/zeaxanthin epoxidase | 93.45 | |
| PRK07573 | 640 | sdhA succinate dehydrogenase flavoprotein subunit; | 93.4 | |
| KOG3855|consensus | 481 | 93.34 |
| >KOG1800|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-56 Score=404.21 Aligned_cols=375 Identities=53% Similarity=0.890 Sum_probs=332.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
..+++|+|||+||||+++|..|.++.+++.|+|+|+.+.++|+.+||++|++++.+.+...+.+.+++..+.|..|..++
T Consensus 18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRyGVAPDHpEvKnvintFt~~aE~~rfsf~gNv~vG 97 (468)
T KOG1800|consen 18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTAEHERFSFFGNVKVG 97 (468)
T ss_pred cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeeeccCCCCcchhhHHHHHHHHhhccceEEEecceec
Confidence 44569999999999999999999977889999999999999999999999999999999999999999999999999999
Q ss_pred EEeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHH
Q psy4525 91 QDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARI 170 (388)
Q Consensus 91 ~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~ 170 (388)
.++++.+.+..||+||||+|+...|.++|||.++.+|++++.|.+||+++|...++..+..+.+|+|||.|++++|+|+.
T Consensus 98 ~dvsl~eL~~~ydavvLaYGa~~dR~L~IPGe~l~~V~Sarefv~Wyng~P~~~~le~dls~~~vvIvG~GNVAlDvARi 177 (468)
T KOG1800|consen 98 RDVSLKELTDNYDAVVLAYGADGDRRLDIPGEELSGVISAREFVGWYNGLPENQNLEPDLSGRKVVIVGNGNVALDVARI 177 (468)
T ss_pred ccccHHHHhhcccEEEEEecCCCCcccCCCCcccccceehhhhhhhccCCCcccccCcccccceEEEEccCchhhhhhhh
Confidence 99999999999999999999998899999999999999999999999999999888778889999999999999999999
Q ss_pred hccCCcccc-cccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccc--cc
Q psy4525 171 LLSPVDQLK-STDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATL--AR 247 (388)
Q Consensus 171 L~~~~~~~~-~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l--~~ 247 (388)
|......+. .|||+..++..++...++.|+++.|+++.+..||.+||||+..+|+.+..+++.++...-...... .|
T Consensus 178 Lls~~~~l~~~TDi~~~aL~~L~~s~VkdV~lvgRRgp~~~aFTiKELRE~~~l~~~~~r~~~~~~~~~~~~~~~~~~~R 257 (468)
T KOG1800|consen 178 LLSPQGPLFRRTDIPKLALNLLKRSNVKDVKLVGRRGPLQVAFTIKELREVLELPGARPRLDPVDFSGKWMDESETPQHR 257 (468)
T ss_pred hhCCccccccccCCcHHHHhhhhcCCcceEEEEeccCccceeeeHHHHHHHhCCCCcccccCchhccceeCCcccccccC
Confidence 998888775 999999999999999999999999999999999999999999999999998887776333222333 48
Q ss_pred hhhHHHHHHHhhCCCCCC----CCCCceeEEEEecCcceeeeeCCCCceeEEEEccC-----ccccCCceeEEecceEEE
Q psy4525 248 PRKRLTELILKTSNPDES----KSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQ-----QALVTEDTELIPSGIAFR 318 (388)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~----~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~-----~~~~~~~~~~l~~D~Vi~ 318 (388)
+++|+.+.+.+.+.++.. .....+-..++|...+.+|.++..+ +..+.+... ..+.+++.+.++|++++.
T Consensus 258 pRkrl~ell~k~~~e~~~~~~~~~~~~k~w~~~f~r~P~~i~~~~~~-v~~~~~~~t~l~~~~~~~tg~~e~~p~~l~i~ 336 (468)
T KOG1800|consen 258 PRKRLTELLLKWAREHRAKASEEAGGSKQWHLRFFRTPGAILPGADG-VSGVRFQVTILEGTQAVPTGAFETLPCGLLIR 336 (468)
T ss_pred chhHHHHHHHHHHHhhhhccccccCccchhHHHHhcCHHHhccCccc-ccceEEEeeeehhhcccccCceEeeccceeEe
Confidence 899999999888765321 2334456788899999999876433 666655522 145678889999999999
Q ss_pred ccccCCccCCCCCcccCCCccc----------------------------------------------------------
Q psy4525 319 SIGYQSRCVDSDIPFNEKSCTV---------------------------------------------------------- 340 (388)
Q Consensus 319 a~G~~p~~~~~~l~~~~~~gi~---------------------------------------------------------- 340 (388)
++||+..+.+.++|||.+.|++
T Consensus 337 sIGYks~pv~~gipFd~~kgvv~n~~GrV~~s~~~pglY~sGW~k~GP~GvIattm~dAf~v~d~I~qD~~~~~~~ss~~ 416 (468)
T KOG1800|consen 337 SIGYKSVPVDSGIPFDDKKGVVPNVNGRVLVSGCSPGLYASGWVKHGPTGVIATTMQDAFEVADTIVQDLKIQFLDSSSA 416 (468)
T ss_pred eeeecccccCCCCCcccccCcccCCCceEEeeccCCceEEEeeeccCCcceeeehhhhHHHHHHHHHHHHHHhhccchHH
Confidence 9999998888899999887765
Q ss_pred -----cCCCCCCeecchhhHHhHHHHHHccccCCCCccccCCHHHHHhhhc
Q psy4525 341 -----IPKEGVPVVTWEGWKAIDKEETERGKLKGKPREKIISIEEMISVSG 386 (388)
Q Consensus 341 -----l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 386 (388)
++.++...+.|++|++||+.|+++|+..|+.|+||++++||++.+.
T Consensus 417 ~l~~~l~~~~v~~v~w~dWe~I~~~E~~~Gk~~~k~reKf~t~Eeml~~~~ 467 (468)
T KOG1800|consen 417 GLEALLESRGVRVVSWSDWEKIDAKEVARGKGTGKPREKFVTFEEMLRLLG 467 (468)
T ss_pred HHHHhhhccCCceecchhHHHhhHHHHhhccccCCchHhcCCHHHHHHHhc
Confidence 5678889999999999999999999999999999999999998764
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-54 Score=412.72 Aligned_cols=370 Identities=28% Similarity=0.528 Sum_probs=305.6
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
..+++|+||||||||++||.+|.+. .+++|+|||+.+.+||+++||++|+++..+.+...+...+...+++|..+..++
T Consensus 37 ~~~krVAIVGaGPAGlyaA~~Ll~~-~g~~VtlfEk~p~pgGLvR~GVaPdh~~~k~v~~~f~~~~~~~~v~f~gnv~VG 115 (506)
T PTZ00188 37 AKPFKVGIIGAGPSALYCCKHLLKH-ERVKVDIFEKLPNPYGLIRYGVAPDHIHVKNTYKTFDPVFLSPNYRFFGNVHVG 115 (506)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHh-cCCeEEEEecCCCCccEEEEeCCCCCccHHHHHHHHHHHHhhCCeEEEeeeEec
Confidence 4568999999999999999987642 699999999999999999999999998888999998888877899999999999
Q ss_pred EEeeecccccccCEEEEeeCCCCCCCCCCC------------CCC----CCCeeecccccccccCCCCcc---ccC-c--
Q psy4525 91 QDISLGDLTNAYHAVVLTYGADNDKKLNIP------------GED----GKNIISARSFVGWYNGLPEDA---SLD-L-- 148 (388)
Q Consensus 91 ~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~------------g~~----~~~v~~~~~~~~~~~~~~~~~---~~~-~-- 148 (388)
.+++.++....||+||+|||+.+. .+| |.+ .+|+|++.+|..|||+++++. ... .
T Consensus 116 ~Dvt~eeL~~~YDAVIlAtGA~~l---~ipi~~~~~~~~~~GGe~~~~~l~Gvf~A~dfV~WYNg~p~~~~~~~~~ayL~ 192 (506)
T PTZ00188 116 VDLKMEELRNHYNCVIFCCGASEV---SIPIGQQDEDKAVSGGETNPRKQNGIFHARDLIYFYNNMYNDVRCKAVDNYLN 192 (506)
T ss_pred CccCHHHHHhcCCEEEEEcCCCCC---CCCcccccceeeeccccccccccCcEEehheEEEeecCCCCcccccccccccc
Confidence 888888887899999999998863 344 554 679999999999999998643 111 0
Q ss_pred -CCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCce
Q psy4525 149 -SLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQ 227 (388)
Q Consensus 149 -~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~ 227 (388)
....++++|||+|++|+|+|+.|++.+++|.+|||+.++++.|++..+++|+++.|+++.+.+||++|++||.++++++
T Consensus 193 p~~~~~~vvVIG~GNVAlDvARiL~~~~d~L~~TDI~~~aL~~L~~s~v~~V~ivgRRGp~qaaFT~kElrEL~~l~~~~ 272 (506)
T PTZ00188 193 SFENFTTSIIIGNGNVSLDIARILIKSPDDLSKTDISSDYLKVIKRHNIKHIYIVGRRGFWQSSFTNAELRELISLENTK 272 (506)
T ss_pred ccCCCCcEEEECCCchHHHHHHHHccCHHHhhcCCCcHHHHHHHHhCCCcEEEEEEecCHHHhCCCHHHHHHHhcCCCCe
Confidence 1145789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccccc---chhhhccccchhhH----HHHHHHhhCC--CCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEc
Q psy4525 228 TVFRNEQLCG---VHEASATLARPRKR----LTELILKTSN--PDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFA 298 (388)
Q Consensus 228 ~~~~~~~~~~---~~~~~~~l~~~~~~----~~~~~~~~~~--~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~ 298 (388)
..+++.+++. ... ...+.+..+| +.+++.++.. .........+.+.++|..+|++|.++ +++|.++++.
T Consensus 273 v~v~~~d~~~~~~~~~-~~~~~r~~~r~~~~~~~~l~~~~~~~~~~~~~~~~r~i~l~F~~sP~ei~~~-~~~v~~v~~~ 350 (506)
T PTZ00188 273 VILSKKNYDLCCHLKS-DEENTNMKKRQHEIFQKMVKNYEEVEKNKEFYKTYKIIEFIFYFEIRQIRPI-DGAMKNVELE 350 (506)
T ss_pred EEEChhhhcccccccc-hhhhhhhhhhhhhHHHHHHHHHHhhccCccCCCCceEEEEEccCCceEEECC-CCcEeEEEEE
Confidence 9999888752 222 3345666665 6667776653 11110124589999999999999963 3789999988
Q ss_pred cCcc-----ccCCceeEEecceEEEccccCCccCCCCCcccCCC----c---------------------cc--------
Q psy4525 299 NQQA-----LVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKS----C---------------------TV-------- 340 (388)
Q Consensus 299 ~~~~-----~~~~~~~~l~~D~Vi~a~G~~p~~~~~~l~~~~~~----g---------------------i~-------- 340 (388)
.+.. +.+++.+.++||+|+.|+||+..+++ ++||+... | ++
T Consensus 351 ~n~l~~~~~~~tg~~~~~~~~lV~rsiGY~g~p~~-g~pFd~~~~n~~grv~~~~~g~Y~~GWiKrGP~GvIgtn~~da~ 429 (506)
T PTZ00188 351 LNKNVPMSFSSFKENKVLVTPLVIFATGFKKSNFA-ENLYNQSVQMFKEDIGQHKFAIFKAGWFDKGPKGNIASQILNSK 429 (506)
T ss_pred EeecccCccCCCCeeEEEEcCEEEEcccccCCCCC-CCCccccCCCCCCcccCCCCCcEEeeecCcCCCceeccCcccHH
Confidence 4332 35677789999999999999998877 78887210 1 00
Q ss_pred ------------------------cCCCCCCeecchhhHHhHHHHHHccccCCCCccccCCHHHHHhhhcc
Q psy4525 341 ------------------------IPKEGVPVVTWEGWKAIDKEETERGKLKGKPREKIISIEEMISVSGN 387 (388)
Q Consensus 341 ------------------------l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 387 (388)
|..++..+++|++|++||++|+++|+..||+|.||++++||+++++.
T Consensus 430 ~t~~~v~~d~~~~~~~~~~~~~~ll~~r~~~~v~~~~W~~Id~~E~~~G~~~gr~R~K~~~~~eml~~~~~ 500 (506)
T PTZ00188 430 NSTHLVLNFLQKVDIFFDNDISSLLKEKQIPYVSFDDWTYLHQLEKQMGAQQNKIAQKFSQTGEVLRILKD 500 (506)
T ss_pred HHHHHHHHHHhhcCcccchhHHHHHHhcCCCeecHHHHHHHHHHHHHhccccCCCccccCCHHHHHHHHhh
Confidence 12346678999999999999999999999999999999999998763
|
|
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-53 Score=417.31 Aligned_cols=376 Identities=47% Similarity=0.799 Sum_probs=310.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
..+++|+||||||||++||..|++...|++|+|||+.+.+||+++||+.|.++..+.+...+.+.+...+++|+.+..++
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~gvaP~~~~~k~v~~~~~~~~~~~~v~~~~nv~vg 103 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRSGVAPDHPETKNVTNQFSRVATDDRVSFFGNVTLG 103 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEeeccCCCcchhHHHHHHHHHHHHHCCeEEEcCEEEC
Confidence 45689999999999999999998644699999999999999999999989998888888888888888899999999999
Q ss_pred EEeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccC-cCCCCCeEEEEcCChHHHHHHH
Q psy4525 91 QDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLD-LSLDCEEATILGQGNVAMDVAR 169 (388)
Q Consensus 91 ~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~vvVIGgG~sg~e~a~ 169 (388)
.+++.++....||+||+|||+.+.+.+++||.+.++|+++.+|+.++++++++.... ....+++|+|||+|++|+|+|.
T Consensus 104 ~dvtl~~L~~~yDaVIlAtGa~~~~~l~IpG~d~~gV~~a~~fl~~~ng~~d~~~~~~~~~~gk~VvVIGgGnvAlD~Ar 183 (491)
T PLN02852 104 RDVSLSELRDLYHVVVLAYGAESDRRLGIPGEDLPGVLSAREFVWWYNGHPDCVHLPPDLKSSDTAVVLGQGNVALDCAR 183 (491)
T ss_pred ccccHHHHhhhCCEEEEecCCCCCCCCCCCCCCCCCeEEHHHHHHHhhcchhhhhhhhcccCCCEEEEECCCHHHHHHHH
Confidence 888888877789999999999876788999999999999999999999887654332 2235799999999999999999
Q ss_pred HhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEeccccccc--chhhhccccc
Q psy4525 170 ILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCG--VHEASATLAR 247 (388)
Q Consensus 170 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~--~~~~~~~l~~ 247 (388)
.|.+..++|..|||+.+.++.++..++++|++++|+++.+++|+++|+++|.+++++...+++.++.. .......+++
T Consensus 184 ~L~~~~~~l~~tdi~~~~l~~l~~~~~~~V~iv~RRg~~~~~ft~~Elrel~~l~~~~~~~~~~~~~~~~~~~~~~~~~r 263 (491)
T PLN02852 184 ILLRPTDELASTDIAEHALEALRGSSVRKVYLVGRRGPVQAACTAKELRELLGLKNVRVRIKEADLTLSPEDEEELKASR 263 (491)
T ss_pred HHHhCccccccccccHHHHHHHhhCCCCEEEEEEcCChHhCCCCHHHHHHHhccCCCceeechhhhccccchhhhhccch
Confidence 99999999999999999999999999999999999999999999999999999999999888877642 2222234678
Q ss_pred hhhHHHHHHHhhCCCCCC-CCCCceeEEEEecCcceeeeeC--CCCceeEEEEcc---------Cc--cccCCceeEEec
Q psy4525 248 PRKRLTELILKTSNPDES-KSNCSKYFRPIFLRSPTEFKLN--DNGAITGINFAN---------QQ--ALVTEDTELIPS 313 (388)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~-~~~~~~gv~~~~~~~~~~i~~~--~~~~v~~v~~~~---------~~--~~~~~~~~~l~~ 313 (388)
.++|..+.+.++...... .....++|.|+|..+|++|.++ ++++|.++++.. ++ .+.+++.+.++|
T Consensus 264 ~~~r~~~~l~~~a~~~~~~~~~~~~~v~~~f~~sP~ei~~~~~~~~~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~ 343 (491)
T PLN02852 264 PKRRVYELLSKAAAAGKCAPSGGQRELHFVFFRNPTRFLDSGDGNGHVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPC 343 (491)
T ss_pred hhHHHHHHHHHHHhhcccccCCCCceEEEEccCCCeEEEccCCCCCcEEEEEEEEeecCCCcccCCcccCCCCCEEEEEC
Confidence 888888888876432110 0013489999999999999853 236899998872 21 234667788999
Q ss_pred ceEEEccccCCccCCCCCcccCCCccc-----------------------------------------------------
Q psy4525 314 GIAFRSIGYQSRCVDSDIPFNEKSCTV----------------------------------------------------- 340 (388)
Q Consensus 314 D~Vi~a~G~~p~~~~~~l~~~~~~gi~----------------------------------------------------- 340 (388)
|.||.|+||++.+.. +++|+...|++
T Consensus 344 D~Vi~aIG~~~~p~~-~l~f~~~~gv~~n~~G~V~~d~~~~T~ipGvyAaGDi~~Gp~gvI~t~~~dA~~ta~~i~~d~~ 422 (491)
T PLN02852 344 GLVLKSIGYKSLPVD-GLPFDHKRGVVPNVHGRVLSSASGADTEPGLYVVGWLKRGPTGIIGTNLTCAEETVASIAEDLE 422 (491)
T ss_pred CEEEEeecCCCCCCC-CCccccCcCeeECCCceEEeCCCCccCCCCEEEeeeEecCCCCeeeecHhhHHHHHHHHHHHHH
Confidence 999999999853322 33332211110
Q ss_pred ---------------------cCCCCCCeecchhhHHhHHHHHHccccCCCCccccCCHHHHHhhhcc
Q psy4525 341 ---------------------IPKEGVPVVTWEGWKAIDKEETERGKLKGKPREKIISIEEMISVSGN 387 (388)
Q Consensus 341 ---------------------l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 387 (388)
|+.++..+|+|++|++||++|+++|+..||+|.||++++|||++++.
T Consensus 423 ~~~~~~~~~~~~~~~~~~~~~l~~r~~~~v~~~~W~~id~~E~~~g~~~g~~r~K~~~~~~ml~~~~~ 490 (491)
T PLN02852 423 QGRLRGVASPPKPGRDGLLELLESRGVRVVPFSGWEKIDSAEKEAGRARGKPREKITSIEEMLKAANE 490 (491)
T ss_pred cCcccCcccCCCCcHHHHHHHHHHcCCCeeCHHHHHHHHHHHHHhccccCCCccccCCHHHHHHHhcc
Confidence 12345578999999999999999999999999999999999998864
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-32 Score=285.79 Aligned_cols=261 Identities=23% Similarity=0.330 Sum_probs=201.2
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
...++|+|||||||||+||..|++ .|++|+|||+.+.+||+++||+ |.+..++++.++..+.++..|++|+.++.++
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar--~G~~VtVfE~~~~~GG~l~yGI-P~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG 380 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAV--EGFPVTVFEAFHDLGGVLRYGI-PEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG 380 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEeeCCCCCceEEccC-CCCcChHHHHHHHHHHHHhhcCeEEEeEEec
Confidence 457999999999999999999999 8999999999999999999999 8898999999999899999999999999999
Q ss_pred EEeeeccccc-ccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccc----cCcCCCCCeEEEEcCChHHH
Q psy4525 91 QDISLGDLTN-AYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDAS----LDLSLDCEEATILGQGNVAM 165 (388)
Q Consensus 91 ~~~~~~~~~~-~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~----~~~~~~~~~vvVIGgG~sg~ 165 (388)
.++++++... .||+|+||||+..++.+++||.+.++|+++.+|+...+....... ......+++|+|||||++|+
T Consensus 381 ~dit~~~l~~~~yDAV~LAtGA~~pr~l~IpG~dl~GV~~a~dfL~~~~~~~~~~~~~~~~~~~~~Gk~VvVIGGG~tA~ 460 (944)
T PRK12779 381 KTATLEDLKAAGFWKIFVGTGAGLPTFMNVPGEHLLGVMSANEFLTRVNLMRGLDDDYETPLPEVKGKEVFVIGGGNTAM 460 (944)
T ss_pred cEEeHHHhccccCCEEEEeCCCCCCCcCCCCCCcCcCcEEHHHHHHHHHhhccccccccccccccCCCEEEEECCCHHHH
Confidence 9998887765 799999999997667899999999999999999865432111000 01123589999999999999
Q ss_pred HHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccc
Q psy4525 166 DVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATL 245 (388)
Q Consensus 166 e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l 245 (388)
|+|..+. +.++ +|++++|++....+....++.+
T Consensus 461 D~A~ta~--------------------R~Ga-~Vtlv~rr~~~~mpa~~~e~~~-------------------------- 493 (944)
T PRK12779 461 DAARTAK--------------------RLGG-NVTIVYRRTKSEMPARVEELHH-------------------------- 493 (944)
T ss_pred HHHHHHH--------------------HcCC-EEEEEEecCcccccccHHHHHH--------------------------
Confidence 9999664 3455 6999999864333322222111
Q ss_pred cchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCC-CCceeEEEEc---------cCc--cccCCceeEEec
Q psy4525 246 ARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLND-NGAITGINFA---------NQQ--ALVTEDTELIPS 313 (388)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~-~~~v~~v~~~---------~~~--~~~~~~~~~l~~ 313 (388)
. .++|++++++..++++..++ ++++.++++. +++ .+.+++..+++|
T Consensus 494 ---------a-------------~eeGV~~~~~~~p~~i~~d~~~~~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~a 551 (944)
T PRK12779 494 ---------A-------------LEEGINLAVLRAPREFIGDDHTHFVTHALLDVNELGEPDKSGRRSPKPTGEIERVPV 551 (944)
T ss_pred ---------H-------------HHCCCEEEeCcceEEEEecCCCCEEEEEEEEEEEeccccCcCceeeecCCceEEEEC
Confidence 0 14799999999999998753 3467776542 122 123456678999
Q ss_pred ceEEEccccCCccCC----CCCcccCCCccccCC
Q psy4525 314 GIAFRSIGYQSRCVD----SDIPFNEKSCTVIPK 343 (388)
Q Consensus 314 D~Vi~a~G~~p~~~~----~~l~~~~~~gi~l~~ 343 (388)
|.||+|+|+.|+... .++.+++++.+++|+
T Consensus 552 D~VI~AiG~~p~~~l~~~~~gle~~~~G~I~vd~ 585 (944)
T PRK12779 552 DLVIMALGNTANPIMKDAEPGLKTNKWGTIEVEK 585 (944)
T ss_pred CEEEEcCCcCCChhhhhcccCceECCCCCEEECC
Confidence 999999999998742 245566555566664
|
|
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=265.15 Aligned_cols=262 Identities=25% Similarity=0.389 Sum_probs=193.6
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhH-HHHHHHHhhcCCCcEEEceEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKN-VINTFTKTGDNPRVNFYGNICL 89 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~-~~~~~~~~~~~~~i~~~~~~~v 89 (388)
.+.++|+||||||||+++|..|++ .|++|+|||+.+.+||++.|++ |.+....+ +.....+++++.|++++.++.+
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~--~G~~V~v~e~~~~~GG~l~~gi-p~~~l~~~~~~~~~~~~~~~~gv~i~~~~~v 214 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAK--MGYDVTIFEALHEPGGVLVYGI-PEFRLPKETVVKKEIENIKKLGVKIETNVVV 214 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCCCCCeeeecC-CCccCCccHHHHHHHHHHHHcCCEEEcCCEE
Confidence 567899999999999999999999 8999999999999999999998 66544443 7777777888899999999988
Q ss_pred EEEeeeccccc--ccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCcc-cc-CcCCCCCeEEEEcCChHHH
Q psy4525 90 GQDISLGDLTN--AYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDA-SL-DLSLDCEEATILGQGNVAM 165 (388)
Q Consensus 90 ~~~~~~~~~~~--~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~-~~-~~~~~~~~vvVIGgG~sg~ 165 (388)
+.+++.++... .||+||||||+..++.+++||.+.++|+++.+|+...+....+. .. .....+++|+|||+|++|+
T Consensus 215 ~~~v~~~~~~~~~~~d~viiAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~va~ 294 (464)
T PRK12831 215 GKTVTIDELLEEEGFDAVFIGSGAGLPKFMGIPGENLNGVFSANEFLTRVNLMKAYKPEYDTPIKVGKKVAVVGGGNVAM 294 (464)
T ss_pred CCcCCHHHHHhccCCCEEEEeCCCCCCCCCCCCCcCCcCcEEHHHHHHHHHhcccccccccCcccCCCeEEEECCcHHHH
Confidence 76666554422 59999999999544788999999999999999886543221111 00 1234579999999999999
Q ss_pred HHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccc
Q psy4525 166 DVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATL 245 (388)
Q Consensus 166 e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l 245 (388)
|+|..+. +.++ +|++++|++...++....++.
T Consensus 295 d~A~~l~--------------------r~Ga-~Vtlv~r~~~~~m~a~~~e~~--------------------------- 326 (464)
T PRK12831 295 DAARTAL--------------------RLGA-EVHIVYRRSEEELPARVEEVH--------------------------- 326 (464)
T ss_pred HHHHHHH--------------------HcCC-EEEEEeecCcccCCCCHHHHH---------------------------
Confidence 9999775 3454 499999986433221111111
Q ss_pred cchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEc---------cCcc--c-cCCceeEEec
Q psy4525 246 ARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFA---------NQQA--L-VTEDTELIPS 313 (388)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~---------~~~~--~-~~~~~~~l~~ 313 (388)
. ..++||+++++..++++..+++|++.++++. +++. + ..++..+++|
T Consensus 327 ---------~------------a~~eGV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~ 385 (464)
T PRK12831 327 ---------H------------AKEEGVIFDLLTNPVEILGDENGWVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEV 385 (464)
T ss_pred ---------H------------HHHcCCEEEecccceEEEecCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEEC
Confidence 0 1157999999999999987666788887764 1211 1 1344568999
Q ss_pred ceEEEccccCCccCC----CCCcccCCCccccCCC
Q psy4525 314 GIAFRSIGYQSRCVD----SDIPFNEKSCTVIPKE 344 (388)
Q Consensus 314 D~Vi~a~G~~p~~~~----~~l~~~~~~gi~l~~~ 344 (388)
|.||+|+|+.|+... .++.++.++.+.+|+.
T Consensus 386 D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd~~ 420 (464)
T PRK12831 386 DTVIMSLGTSPNPLISSTTKGLKINKRGCIVADEE 420 (464)
T ss_pred CEEEECCCCCCChhhhcccCCceECCCCcEEECCC
Confidence 999999999998742 3556665555667655
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-31 Score=262.04 Aligned_cols=276 Identities=24% Similarity=0.347 Sum_probs=200.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
...++|+|||+||||+++|..|++ .|++|+|||+.+.+||.+.|++ |.+...+++.....+.+.+.+++++.++.++
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~--~G~~V~vie~~~~~GG~l~~gi-p~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~ 207 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAK--AGHSVTVFEALHKPGGVVTYGI-PEFRLPKEIVVTEIKTLKKLGVTFRMNFLVG 207 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCcEeeecC-CCccCCHHHHHHHHHHHHhCCcEEEeCCccC
Confidence 456899999999999999999999 8999999999999999999998 6666667777777777888899999988776
Q ss_pred EEeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCcc--cc-CcCCCCCeEEEEcCChHHHHH
Q psy4525 91 QDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDA--SL-DLSLDCEEATILGQGNVAMDV 167 (388)
Q Consensus 91 ~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~--~~-~~~~~~~~vvVIGgG~sg~e~ 167 (388)
.++++++....||+||||||+..++.+++||.+.++|+++.+|+...+.+.... .. .....+++|+|||+|++|+|+
T Consensus 208 ~~v~~~~~~~~yd~viiAtGa~~p~~~~ipG~~~~gv~~~~~~l~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~ 287 (449)
T TIGR01316 208 KTATLEELFSQYDAVFIGTGAGLPKLMNIPGEELCGVYSANDFLTRANLMKAYEFPHADTPVYAGKSVVVIGGGNTAVDS 287 (449)
T ss_pred CcCCHHHHHhhCCEEEEeCCCCCCCcCCCCCCCCCCcEEHHHHHHHHhhcccccccccCCcccCCCeEEEECCCHHHHHH
Confidence 666665544579999999998544688999999999999998875433221110 00 122357999999999999999
Q ss_pred HHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccc
Q psy4525 168 ARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLAR 247 (388)
Q Consensus 168 a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 247 (388)
|..+. +.+. +||+++|+.....+....++
T Consensus 288 A~~l~--------------------~~G~-~Vtlv~~~~~~~~~~~~~~~------------------------------ 316 (449)
T TIGR01316 288 ARTAL--------------------RLGA-EVHCLYRRTREDMTARVEEI------------------------------ 316 (449)
T ss_pred HHHHH--------------------HcCC-EEEEEeecCcccCCCCHHHH------------------------------
Confidence 99775 3454 59999998653322221111
Q ss_pred hhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEc---------cCc--c-ccCCceeEEecce
Q psy4525 248 PRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFA---------NQQ--A-LVTEDTELIPSGI 315 (388)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~---------~~~--~-~~~~~~~~l~~D~ 315 (388)
+. +.++||+++++..++++..++++++.++++. +++ . ..+++.++++||.
T Consensus 317 ------~~------------l~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~ 378 (449)
T TIGR01316 317 ------AH------------AEEEGVKFHFLCQPVEIIGDEEGNVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADA 378 (449)
T ss_pred ------HH------------HHhCCCEEEeccCcEEEEEcCCCeEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCE
Confidence 11 1267999999999999987656788777764 111 0 1134456899999
Q ss_pred EEEccccCCccCC---CCCcccCCCccccCCCCCCeecchhhHHhHH
Q psy4525 316 AFRSIGYQSRCVD---SDIPFNEKSCTVIPKEGVPVVTWEGWKAIDK 359 (388)
Q Consensus 316 Vi~a~G~~p~~~~---~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~ 359 (388)
||+|+|+.|+... .++.+++++++++|+..... ..+.|...|+
T Consensus 379 Vi~AiG~~p~~~~l~~~gl~~~~~G~i~vd~~~~Ts-~~~VfA~GD~ 424 (449)
T TIGR01316 379 VIVAIGNGSNPIMAETTRLKTSERGTIVVDEDQRTS-IPGVFAGGDI 424 (449)
T ss_pred EEECCCCCCCchhhhccCcccCCCCeEEeCCCCccC-CCCEEEecCC
Confidence 9999999999742 35666665667776543221 2245555443
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.4e-31 Score=274.22 Aligned_cols=277 Identities=20% Similarity=0.329 Sum_probs=204.4
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
...++|+||||||||++||..|++ .|++|+|||+.+.+||+++||+ |.+...+++.+...+.+.+.|++|+.++.++
T Consensus 429 ~~~~~V~IIGaGpAGl~aA~~l~~--~G~~V~v~e~~~~~GG~l~~gi-p~~rlp~~~~~~~~~~l~~~gv~~~~~~~v~ 505 (752)
T PRK12778 429 KNGKKVAVIGSGPAGLSFAGDLAK--RGYDVTVFEALHEIGGVLKYGI-PEFRLPKKIVDVEIENLKKLGVKFETDVIVG 505 (752)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCCeeeecC-CCCCCCHHHHHHHHHHHHHCCCEEECCCEEC
Confidence 457899999999999999999999 8999999999989999999999 7777777777777778888999999999887
Q ss_pred EEeeecccc-cccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccc-c-CcCCCCCeEEEEcCChHHHHH
Q psy4525 91 QDISLGDLT-NAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDAS-L-DLSLDCEEATILGQGNVAMDV 167 (388)
Q Consensus 91 ~~~~~~~~~-~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~-~-~~~~~~~~vvVIGgG~sg~e~ 167 (388)
.++++++.. ..||+||||||+..++.+++||.+.++|+++.+|+...+....... . .....+++|+|||||++|+|+
T Consensus 506 ~~v~~~~l~~~~ydavvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~d~ 585 (752)
T PRK12778 506 KTITIEELEEEGFKGIFIASGAGLPNFMNIPGENSNGVMSSNEYLTRVNLMDAASPDSDTPIKFGKKVAVVGGGNTAMDS 585 (752)
T ss_pred CcCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCCCCCCcEEHHHHHHHHhhcccccccccCcccCCCcEEEECCcHHHHHH
Confidence 777776654 3699999999996447889999999999999998865442211110 0 122457999999999999999
Q ss_pred HHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccc
Q psy4525 168 ARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLAR 247 (388)
Q Consensus 168 a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 247 (388)
|..+. +.++++||+++|++....+....++.
T Consensus 586 A~~~~--------------------r~Ga~~Vtlv~r~~~~~~~~~~~e~~----------------------------- 616 (752)
T PRK12778 586 ARTAK--------------------RLGAERVTIVYRRSEEEMPARLEEVK----------------------------- 616 (752)
T ss_pred HHHHH--------------------HcCCCeEEEeeecCcccCCCCHHHHH-----------------------------
Confidence 99765 35666799999986532222111111
Q ss_pred hhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEc---------cCcc---ccCCceeEEecce
Q psy4525 248 PRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFA---------NQQA---LVTEDTELIPSGI 315 (388)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~---------~~~~---~~~~~~~~l~~D~ 315 (388)
. ..++||+++++..++++..++++++.++++. +++. ..+++..+++||.
T Consensus 617 -------~------------~~~~GV~i~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~ 677 (752)
T PRK12778 617 -------H------------AKEEGIEFLTLHNPIEYLADEKGWVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDL 677 (752)
T ss_pred -------H------------HHHcCCEEEecCcceEEEECCCCEEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCE
Confidence 1 1157999999999999987666788888764 1211 1235556899999
Q ss_pred EEEccccCCccCC----CCCcccCCCccccCCCCCCeecchhhHHhHH
Q psy4525 316 AFRSIGYQSRCVD----SDIPFNEKSCTVIPKEGVPVVTWEGWKAIDK 359 (388)
Q Consensus 316 Vi~a~G~~p~~~~----~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~ 359 (388)
||+|+|+.|+... .++.+++++.+.+|+.... -..+.|...|+
T Consensus 678 Vi~A~G~~p~~~l~~~~~gl~~~~~G~i~vd~~~~T-s~~gVfA~GD~ 724 (752)
T PRK12778 678 VIVSVGVSPNPLVPSSIPGLELNRKGTIVVDEEMQS-SIPGIYAGGDI 724 (752)
T ss_pred EEECcCCCCCccccccccCceECCCCCEEeCCCCCC-CCCCEEEeCCc
Confidence 9999999999742 2456665556667654421 12244444443
|
|
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.7e-31 Score=277.32 Aligned_cols=261 Identities=24% Similarity=0.344 Sum_probs=200.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
+.++|+|||||||||+||..|++ .|++|+|||+.+.+||.++||+ |.+...+++.....+.+.+.|++++.++.++.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~--~G~~VtV~E~~~~~GG~l~~gi-p~~rl~~e~~~~~~~~l~~~Gv~~~~~~~vg~ 505 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVK--YGVDVTVYEALHVVGGVLQYGI-PSFRLPRDIIDREVQRLVDIGVKIETNKVIGK 505 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCCcceeeccC-CccCCCHHHHHHHHHHHHHCCCEEEeCCccCC
Confidence 46899999999999999999999 8999999999999999999999 77777888888888889999999999988877
Q ss_pred Eeeecccc--cccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCC--cccc-CcCCCCCeEEEEcCChHHHH
Q psy4525 92 DISLGDLT--NAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPE--DASL-DLSLDCEEATILGQGNVAMD 166 (388)
Q Consensus 92 ~~~~~~~~--~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~--~~~~-~~~~~~~~vvVIGgG~sg~e 166 (388)
+++.++.. ..||+||||||+..++.+++||.+.++|+++.+|+...+.... +... .....+++|+|||||++|+|
T Consensus 506 ~~~~~~l~~~~~yDaViIATGa~~pr~l~IpG~~l~gV~~a~~fL~~~~~~~~~~~~~~~~~~~~Gk~VvVIGgG~tA~D 585 (1006)
T PRK12775 506 TFTVPQLMNDKGFDAVFLGVGAGAPTFLGIPGEFAGQVYSANEFLTRVNLMGGDKFPFLDTPISLGKSVVVIGAGNTAMD 585 (1006)
T ss_pred ccCHHHHhhccCCCEEEEecCCCCCCCCCCCCcCCCCcEEHHHHHHHHHhcCccccccccCCccCCCEEEEECCcHHHHH
Confidence 76665543 4799999999997557899999999999999999866542111 1000 12345899999999999999
Q ss_pred HHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhcccc
Q psy4525 167 VARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLA 246 (388)
Q Consensus 167 ~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 246 (388)
+|..+. +.|+++|++++|+....++....++.+
T Consensus 586 ~A~~a~--------------------rlGa~~Vtiv~rr~~~em~a~~~e~~~--------------------------- 618 (1006)
T PRK12775 586 CLRVAK--------------------RLGAPTVRCVYRRSEAEAPARIEEIRH--------------------------- 618 (1006)
T ss_pred HHHHHH--------------------HcCCCEEEEEeecCcccCCCCHHHHHH---------------------------
Confidence 988554 457778999998866544433322211
Q ss_pred chhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEcc---------Cc--cccCCceeEEecce
Q psy4525 247 RPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFAN---------QQ--ALVTEDTELIPSGI 315 (388)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~---------~~--~~~~~~~~~l~~D~ 315 (388)
..+.||+++++..++++..+++|++.++++.. ++ .+.+++..+++||.
T Consensus 619 ---------------------a~eeGI~~~~~~~p~~i~~~~~G~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~ 677 (1006)
T PRK12775 619 ---------------------AKEEGIDFFFLHSPVEIYVDAEGSVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDT 677 (1006)
T ss_pred ---------------------HHhCCCEEEecCCcEEEEeCCCCeEEEEEEEEEEecccCCCCCccccCCCceEEEEcCE
Confidence 12579999999999999876678888887641 21 12234556899999
Q ss_pred EEEccccCCccCC----CCCcccCCCccccCC
Q psy4525 316 AFRSIGYQSRCVD----SDIPFNEKSCTVIPK 343 (388)
Q Consensus 316 Vi~a~G~~p~~~~----~~l~~~~~~gi~l~~ 343 (388)
||+|+|+.|+... .++.++..+.+.+|+
T Consensus 678 Vi~AiG~~p~~~~~~~~~gl~l~~~G~I~vd~ 709 (1006)
T PRK12775 678 VIYALGTKANPIITQSTPGLALNKWGNIAADD 709 (1006)
T ss_pred EEECCCcCCChhhhhccCCcccCCCCcEEeCC
Confidence 9999999999742 245666544455554
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-31 Score=255.10 Aligned_cols=309 Identities=24% Similarity=0.372 Sum_probs=240.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
...++|+|||+||||+++|..|.+ .|+.||+||+.+.+||.+.||+ |.+...+++.+...+.+++.|++|+.++.++
T Consensus 121 ~tg~~VaviGaGPAGl~~a~~L~~--~G~~Vtv~e~~~~~GGll~yGI-P~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG 197 (457)
T COG0493 121 RTGKKVAVIGAGPAGLAAADDLSR--AGHDVTVFERVALDGGLLLYGI-PDFKLPKDILDRRLELLERSGVEFKLNVRVG 197 (457)
T ss_pred CCCCEEEEECCCchHhhhHHHHHh--CCCeEEEeCCcCCCceeEEecC-chhhccchHHHHHHHHHHHcCeEEEEcceEC
Confidence 456899999999999999999999 9999999999999999999999 9999999999999999999999999999999
Q ss_pred EEeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCC--CCcc-ccCcCCCCCeEEEEcCChHHHHH
Q psy4525 91 QDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGL--PEDA-SLDLSLDCEEATILGQGNVAMDV 167 (388)
Q Consensus 91 ~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~--~~~~-~~~~~~~~~~vvVIGgG~sg~e~ 167 (388)
.+++.++....||++++|||+..++.+++||.++++|+.+.+|+...+.. .... .......+++|+|||+|++++|+
T Consensus 198 ~~it~~~L~~e~Dav~l~~G~~~~~~l~i~g~d~~gv~~A~dfL~~~~~~~~~~~~~~~~~~~~gk~vvVIGgG~Ta~D~ 277 (457)
T COG0493 198 RDITLEELLKEYDAVFLATGAGKPRPLDIPGEDAKGVAFALDFLTRLNKEVLGDFAEDRTPPAKGKRVVVIGGGDTAMDC 277 (457)
T ss_pred CcCCHHHHHHhhCEEEEeccccCCCCCCCCCcCCCcchHHHHHHHHHHHHHhcccccccCCCCCCCeEEEECCCCCHHHH
Confidence 99999888888999999999988889999999999999999998665421 1111 01222345999999999999999
Q ss_pred HHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccc
Q psy4525 168 ARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLAR 247 (388)
Q Consensus 168 a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 247 (388)
+.... ..|+++|+.++|...- . ++. ++
T Consensus 278 ~~t~~--------------------r~Ga~~v~~~~~~~~~--~-------~~~------------------------~~ 304 (457)
T COG0493 278 AGTAL--------------------RLGAKSVTCFYREDRD--D-------ETN------------------------EW 304 (457)
T ss_pred HHHHh--------------------hcCCeEEEEecccccc--c-------cCC------------------------cc
Confidence 97332 4788899998744321 0 000 00
Q ss_pred hhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccC------------c-cccCCceeEEecc
Q psy4525 248 PRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQ------------Q-ALVTEDTELIPSG 314 (388)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~------------~-~~~~~~~~~l~~D 314 (388)
+.......+ +....+|+.+.+...+.++.++++|+|.++++... . .-..++...+++|
T Consensus 305 ~~~~~~~~~---------~~a~eeg~~~~~~~~~~~~~~~e~GrV~~~~~~~~~~~~~~~~~~r~~p~~v~gs~~~~~aD 375 (457)
T COG0493 305 PTWAAQLEV---------RSAGEEGVERLPFVQPKAFIGNEGGRVTGVKFGRVEPGEYVDGWGRRGPVGVIGTEKTDAAD 375 (457)
T ss_pred cccchhhhh---------hhhhhcCCcccccCCceeEeecCCCcEeeeecccccccCcccccccccCccccCceEEehHH
Confidence 000000000 11336789999999999999988899998866521 0 1124677889999
Q ss_pred eEEEccccCCccCC-----CCCcccCCCccccCCC----CCCeecchhhHHhH-HHHHHccccCCCCccccCCHHHHHhh
Q psy4525 315 IAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKE----GVPVVTWEGWKAID-KEETERGKLKGKPREKIISIEEMISV 384 (388)
Q Consensus 315 ~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~----~~~~~~~~~w~~~~-~~~~~~~~~~~~~~~k~~~~~~~~~~ 384 (388)
+|+.|+|+.++... .++..+..+.+.+++. ++.. .|.+|..++ +++...|...||.+.|.++.++|.+.
T Consensus 376 ~v~~aig~~~~~~~~~~~~~~~~~~~~g~i~~~~~~~~ts~~~-vfa~gD~~~g~~~vv~ai~eGr~aak~i~~~~l~~~ 454 (457)
T COG0493 376 TVILAIGFEGDATDGLLLEFGLKLDKRGRIKVDENLQQTSIPG-VFAGGDAVRGAALVVWAIAEGREAAKAIDKELLLGK 454 (457)
T ss_pred HHHHHhccCCCcccccccccccccCCCCceecccccccccCCC-eeeCceeccchhhhhhHHhhchHHHHhhhHHHHhhc
Confidence 99999999987543 1345555555555544 3334 899999999 99999999999999999999999875
Q ss_pred h
Q psy4525 385 S 385 (388)
Q Consensus 385 ~ 385 (388)
.
T Consensus 455 ~ 455 (457)
T COG0493 455 A 455 (457)
T ss_pred c
Confidence 4
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.2e-29 Score=258.94 Aligned_cols=261 Identities=23% Similarity=0.362 Sum_probs=194.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
.+.++|+|||+|||||++|..|++ .|++|+|||+.+.+||+++|++ |.+...+++.....+.+++.|++++.++.++
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~--~G~~V~V~E~~~~~GG~l~~gi-p~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~ 401 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLAR--NGVAVTVYDRHPEIGGLLTFGI-PAFKLDKSLLARRREIFSAMGIEFELNCEVG 401 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCceeeecC-CCccCCHHHHHHHHHHHHHCCeEEECCCEeC
Confidence 356899999999999999999999 8999999999999999999998 7777777888777788888999999999887
Q ss_pred EEeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeeccccccccc----CCCCcccc-CcCCCCCeEEEEcCChHHH
Q psy4525 91 QDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYN----GLPEDASL-DLSLDCEEATILGQGNVAM 165 (388)
Q Consensus 91 ~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~----~~~~~~~~-~~~~~~~~vvVIGgG~sg~ 165 (388)
.+++..+....||+|++|||+..++.+++||.+.++|+++.+|+.... ........ .....+++|+|||+|++|+
T Consensus 402 ~~i~~~~~~~~~DavilAtGa~~~~~l~i~g~~~~Gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~ 481 (654)
T PRK12769 402 KDISLESLLEDYDAVFVGVGTYRSMKAGLPNEDAPGVYDALPFLIANTKQVMGLEELPEEPFINTAGLNVVVLGGGDTAM 481 (654)
T ss_pred CcCCHHHHHhcCCEEEEeCCCCCCCCCCCCCCCCCCeEEhHHHHHHHHhhhccCccccccccccCCCCeEEEECCcHHHH
Confidence 666655544589999999999876678999999999998877652111 11100000 1124579999999999999
Q ss_pred HHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccc
Q psy4525 166 DVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATL 245 (388)
Q Consensus 166 e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l 245 (388)
|+|..+. +.++++|++++|++....+..+.++.+
T Consensus 482 d~A~~a~--------------------r~ga~~Vt~i~~~~~~~~~~~~~e~~~-------------------------- 515 (654)
T PRK12769 482 DCVRTAL--------------------RHGASNVTCAYRRDEANMPGSKKEVKN-------------------------- 515 (654)
T ss_pred HHHHHHH--------------------HcCCCeEEEeEecCCCCCCCCHHHHHH--------------------------
Confidence 9998554 367778999999876544433333211
Q ss_pred cchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEcc---------Ccc---ccCCceeEEec
Q psy4525 246 ARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFAN---------QQA---LVTEDTELIPS 313 (388)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~---------~~~---~~~~~~~~l~~ 313 (388)
+.+.||+++++..++++..++++++.++++.. |+. ...++..++++
T Consensus 516 ----------------------~~~~Gv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~ 573 (654)
T PRK12769 516 ----------------------AREEGANFEFNVQPVALELNEQGHVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPA 573 (654)
T ss_pred ----------------------HHHcCCeEEeccCcEEEEECCCCeEEEEEEEEEEecCcCCCCCCcceeCCCceEEEEC
Confidence 12579999999999999865567888877631 211 12355568999
Q ss_pred ceEEEccccCCccC--C--CCCcccCCCccccC
Q psy4525 314 GIAFRSIGYQSRCV--D--SDIPFNEKSCTVIP 342 (388)
Q Consensus 314 D~Vi~a~G~~p~~~--~--~~l~~~~~~gi~l~ 342 (388)
|.||+|+|+.|+.. . .++.++.++.+.+|
T Consensus 574 D~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd 606 (654)
T PRK12769 574 DAVIMAFGFNPHGMPWLESHGVTVDKWGRIIAD 606 (654)
T ss_pred CEEEECccCCCCccccccccCCcCCCCCCEEeC
Confidence 99999999999852 1 34555544445554
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-29 Score=250.09 Aligned_cols=258 Identities=25% Similarity=0.375 Sum_probs=192.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
..+++|+||||||||+++|..|++ .|++|+|||+.+.+||++.+++ |.+....++..+..+++.+.+++++.++.++
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~--~g~~V~lie~~~~~gG~l~~gi-p~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~ 214 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLAR--KGYDVTIFEARDKAGGLLRYGI-PEFRLPKDIVDREVERLLKLGVEIRTNTEVG 214 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEccCCCCCcEeeccC-CCccCCHHHHHHHHHHHHHcCCEEEeCCEEC
Confidence 456899999999999999999999 8999999999999999999988 7666667788888888888899999988876
Q ss_pred EEeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHH
Q psy4525 91 QDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARI 170 (388)
Q Consensus 91 ~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~ 170 (388)
.+++.++....||+||+|||+..++.+++||.+.++++++.+++......... .....+++|+|||+|++|+|+|..
T Consensus 215 ~~v~~~~~~~~~d~vvlAtGa~~~~~~~i~G~~~~gv~~~~~~l~~~~~~~~~---~~~~~g~~VvViGgG~~g~e~A~~ 291 (457)
T PRK11749 215 RDITLDELRAGYDAVFIGTGAGLPRFLGIPGENLGGVYSAVDFLTRVNQAVAD---YDLPVGKRVVVIGGGNTAMDAART 291 (457)
T ss_pred CccCHHHHHhhCCEEEEccCCCCCCCCCCCCccCCCcEEHHHHHHHHhhcccc---ccCCCCCeEEEECCCHHHHHHHHH
Confidence 55555444457999999999975567889998888999888877543321100 112257999999999999999997
Q ss_pred hccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhh
Q psy4525 171 LLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRK 250 (388)
Q Consensus 171 L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 250 (388)
|. +.+.++|++++|++....+....++.
T Consensus 292 l~--------------------~~G~~~Vtlv~~~~~~~~~~~~~~~~-------------------------------- 319 (457)
T PRK11749 292 AK--------------------RLGAESVTIVYRRGREEMPASEEEVE-------------------------------- 319 (457)
T ss_pred HH--------------------HcCCCeEEEeeecCcccCCCCHHHHH--------------------------------
Confidence 75 35666899999986543332222211
Q ss_pred HHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEcc---------Cc--cccCCceeEEecceEEEc
Q psy4525 251 RLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFAN---------QQ--ALVTEDTELIPSGIAFRS 319 (388)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~---------~~--~~~~~~~~~l~~D~Vi~a 319 (388)
. +.+.||+++++..++++..++ +.+.++++.. ++ ....+++++++||.||+|
T Consensus 320 ----~------------~~~~GV~i~~~~~v~~i~~~~-~~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a 382 (457)
T PRK11749 320 ----H------------AKEEGVEFEWLAAPVEILGDE-GRVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKA 382 (457)
T ss_pred ----H------------HHHCCCEEEecCCcEEEEecC-CceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEEC
Confidence 1 125799999999999998643 3445555431 11 011356678999999999
Q ss_pred cccCCccCC----CCCcccCCCccccCC
Q psy4525 320 IGYQSRCVD----SDIPFNEKSCTVIPK 343 (388)
Q Consensus 320 ~G~~p~~~~----~~l~~~~~~gi~l~~ 343 (388)
+|++|+... .++.+++.+++.+|+
T Consensus 383 ~G~~p~~~l~~~~~gl~~~~~g~i~vd~ 410 (457)
T PRK11749 383 IGQTPNPLILSTTPGLELNRWGTIIADD 410 (457)
T ss_pred ccCCCCchhhccccCccCCCCCCEEeCC
Confidence 999999532 346677666777776
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.8e-29 Score=245.45 Aligned_cols=261 Identities=24% Similarity=0.408 Sum_probs=193.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
.+.++|+|||+||+|+++|..|++ .|++|++||+.+.+||+++||+ |.+...+++.....+++.+.|++++.++.++
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~--~G~~V~i~e~~~~~gG~l~~gi-p~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~ 215 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILAR--AGVQVVVFDRHPEIGGLLTFGI-PSFKLDKAVLSRRREIFTAMGIEFHLNCEVG 215 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCCCceeeecC-ccccCCHHHHHHHHHHHHHCCCEEECCCEeC
Confidence 356899999999999999999999 8999999999999999999998 7777777788878888888999999998886
Q ss_pred EEeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeeccccccc----ccCCCCccccC-cCCCCCeEEEEcCChHHH
Q psy4525 91 QDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGW----YNGLPEDASLD-LSLDCEEATILGQGNVAM 165 (388)
Q Consensus 91 ~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~----~~~~~~~~~~~-~~~~~~~vvVIGgG~sg~ 165 (388)
.+++.++....||+||+|||+.+.+.+++||.+.++|+++.+|+.. +.+........ ....+++++|||+|++|+
T Consensus 216 ~~~~~~~~~~~~D~vilAtGa~~~~~~~i~g~~~~gV~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~a~ 295 (467)
T TIGR01318 216 RDISLDDLLEDYDAVFLGVGTYRSMRGGLPGEDAPGVLQALPFLIANTRQLMGLPESPEEPLIDVEGKRVVVLGGGDTAM 295 (467)
T ss_pred CccCHHHHHhcCCEEEEEeCCCCCCcCCCCCcCCCCcEEHHHHHHHHHHHhcCCCccccccccccCCCEEEEECCcHHHH
Confidence 6555544445799999999998866789999999999988776532 11111100001 123579999999999999
Q ss_pred HHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccc
Q psy4525 166 DVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATL 245 (388)
Q Consensus 166 e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l 245 (388)
|+|..+. ..++++||+++|++....+....++.+
T Consensus 296 d~A~~a~--------------------~~Ga~~Vtvv~r~~~~~~~~~~~e~~~-------------------------- 329 (467)
T TIGR01318 296 DCVRTAI--------------------RLGAASVTCAYRRDEANMPGSRREVAN-------------------------- 329 (467)
T ss_pred HHHHHHH--------------------HcCCCeEEEEEecCcccCCCCHHHHHH--------------------------
Confidence 9998654 356678999999876544333222211
Q ss_pred cchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEcc---------Ccc---ccCCceeEEec
Q psy4525 246 ARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFAN---------QQA---LVTEDTELIPS 313 (388)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~---------~~~---~~~~~~~~l~~ 313 (388)
..++||++++++.++++..++++++.++++.. ++. ...++.++++|
T Consensus 330 ----------------------~~~~GV~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~ 387 (467)
T TIGR01318 330 ----------------------AREEGVEFLFNVQPVYIECDEDGRVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPA 387 (467)
T ss_pred ----------------------HHhcCCEEEecCCcEEEEECCCCeEEEEEEEEEEecccCCCCCccceecCCceEEEEC
Confidence 11579999999999999865567787776531 110 12355678999
Q ss_pred ceEEEccccCCccCC----CCCcccCCCccccC
Q psy4525 314 GIAFRSIGYQSRCVD----SDIPFNEKSCTVIP 342 (388)
Q Consensus 314 D~Vi~a~G~~p~~~~----~~l~~~~~~gi~l~ 342 (388)
|.||+|+|++|+... .++.++..+.+.+|
T Consensus 388 D~Vi~a~G~~p~~~~~~~~~gl~~~~~g~i~vd 420 (467)
T TIGR01318 388 DVVIMAFGFQPHAMPWLAGHGITLDSWGRIITG 420 (467)
T ss_pred CEEEECCcCCCCccccccccCccCCCCCCEEeC
Confidence 999999999998521 34555544455565
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-29 Score=254.65 Aligned_cols=256 Identities=24% Similarity=0.342 Sum_probs=189.8
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
...++|+|||+||||+++|..|++ .|++|++||+.+.+||.+++++ |.+...+++.++..+.+.+.|++++.++.++
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~--~G~~Vtv~e~~~~~GG~l~~gi-p~~~~~~~~~~~~~~~l~~~Gv~i~~~~~v~ 267 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLR--KGHDVTIFDANEQAGGMMRYGI-PRFRLPESVIDADIAPLRAMGAEFRFNTVFG 267 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCceeeecC-CCCCCCHHHHHHHHHHHHHcCCEEEeCCccc
Confidence 356899999999999999999999 8999999999999999999998 7777777777777788888899999888776
Q ss_pred EEeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHH
Q psy4525 91 QDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARI 170 (388)
Q Consensus 91 ~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~ 170 (388)
.+++.++....||+||+|||+.+.+.+++||.+.++++++.+++...... .....+++|+|||+|++|+|+|..
T Consensus 268 ~dv~~~~~~~~~DaVilAtGa~~~~~~~ipG~~~~gv~~~~~~l~~~~~~------~~~~~gk~VvVIGgG~~a~e~A~~ 341 (652)
T PRK12814 268 RDITLEELQKEFDAVLLAVGAQKASKMGIPGEELPGVISGIDFLRNVALG------TALHPGKKVVVIGGGNTAIDAART 341 (652)
T ss_pred CccCHHHHHhhcCEEEEEcCCCCCCCCCCCCcCcCCcEeHHHHHHHhhcC------CcccCCCeEEEECCCHHHHHHHHH
Confidence 66555544456999999999987567899999889999887776432211 123458999999999999999997
Q ss_pred hccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhh
Q psy4525 171 LLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRK 250 (388)
Q Consensus 171 L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 250 (388)
+. +.++++|++++|+....++....++.+
T Consensus 342 l~--------------------~~Ga~~Vtlv~r~~~~~mpa~~~ei~~------------------------------- 370 (652)
T PRK12814 342 AL--------------------RLGAESVTILYRRTREEMPANRAEIEE------------------------------- 370 (652)
T ss_pred HH--------------------HcCCCeEEEeeecCcccCCCCHHHHHH-------------------------------
Confidence 65 356678999999875433333222211
Q ss_pred HHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCC-ceeEEEEcc------Cc--cc-cCCceeEEecceEEEcc
Q psy4525 251 RLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNG-AITGINFAN------QQ--AL-VTEDTELIPSGIAFRSI 320 (388)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~-~v~~v~~~~------~~--~~-~~~~~~~l~~D~Vi~a~ 320 (388)
. .++||+++++..++++..++++ .+..+++.. ++ .+ ..++..++++|.||+|+
T Consensus 371 ----a-------------~~eGV~i~~~~~~~~i~~~~~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~Ai 433 (652)
T PRK12814 371 ----A-------------LAEGVSLRELAAPVSIERSEGGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAI 433 (652)
T ss_pred ----H-------------HHcCCcEEeccCcEEEEecCCeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECC
Confidence 1 1468999999999999864322 123333321 11 11 13445689999999999
Q ss_pred ccCCccCC---CCCcccCCCccccCC
Q psy4525 321 GYQSRCVD---SDIPFNEKSCTVIPK 343 (388)
Q Consensus 321 G~~p~~~~---~~l~~~~~~gi~l~~ 343 (388)
|+.|+... .++.++..+.+.+|+
T Consensus 434 G~~p~~~ll~~~gl~~~~~G~I~vd~ 459 (652)
T PRK12814 434 GQQVDPPIAEAAGIGTSRNGTVKVDP 459 (652)
T ss_pred CCcCCcccccccCccccCCCcEeeCC
Confidence 99999742 356666555566664
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=252.40 Aligned_cols=260 Identities=23% Similarity=0.388 Sum_probs=194.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++|+|||+||||+++|..|++ .|++|++||+.+.+||+++||+ |.+...+++.....+.+...|++++.++.++.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~--~G~~Vtv~e~~~~~GG~l~~gi-p~~~l~~~~~~~~~~~~~~~Gv~~~~~~~v~~ 385 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILAR--AGVQVDVFDRHPEIGGMLTFGI-PPFKLDKTVLSQRREIFTAMGIDFHLNCEIGR 385 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--cCCcEEEEeCCCCCCCeeeccC-CcccCCHHHHHHHHHHHHHCCeEEEcCCccCC
Confidence 47899999999999999999999 8999999999999999999999 66667777777777888889999999998876
Q ss_pred EeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeeccccccccc----CCCCcccc-CcCCCCCeEEEEcCChHHHH
Q psy4525 92 DISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYN----GLPEDASL-DLSLDCEEATILGQGNVAMD 166 (388)
Q Consensus 92 ~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~----~~~~~~~~-~~~~~~~~vvVIGgG~sg~e 166 (388)
+++..+....||+|++|||+..++.+++||.+.++++++.+|+.... ........ .....+++|+|||+|++|+|
T Consensus 386 ~~~~~~l~~~~DaV~latGa~~~~~~~i~g~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~~~~~~gk~vvViGgG~~a~d 465 (639)
T PRK12809 386 DITFSDLTSEYDAVFIGVGTYGMMRADLPHEDAPGVIQALPFLTAHTRQLMGLPESEEYPLTDVEGKRVVVLGGGDTTMD 465 (639)
T ss_pred cCCHHHHHhcCCEEEEeCCCCCCCCCCCCCCccCCcEeHHHHHHHHHHhhccCccccccccccCCCCeEEEECCcHHHHH
Confidence 66665555689999999999876778999999999998877763211 11110000 11235799999999999999
Q ss_pred HHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhcccc
Q psy4525 167 VARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLA 246 (388)
Q Consensus 167 ~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 246 (388)
+|..+. +.++++||+++|++...++....++.+
T Consensus 466 ~a~~~~--------------------~~Ga~~Vt~v~rr~~~~~~~~~~e~~~--------------------------- 498 (639)
T PRK12809 466 CLRTSI--------------------RLNAASVTCAYRRDEVSMPGSRKEVVN--------------------------- 498 (639)
T ss_pred HHHHHH--------------------HcCCCeEEEeeecCcccCCCCHHHHHH---------------------------
Confidence 998543 367778999999875544433332211
Q ss_pred chhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEc---------cCcc---ccCCceeEEecc
Q psy4525 247 RPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFA---------NQQA---LVTEDTELIPSG 314 (388)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~---------~~~~---~~~~~~~~l~~D 314 (388)
..++||+++++..++++..+++++|.++++. +++. ...++..+++||
T Consensus 499 ---------------------a~~eGv~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD 557 (639)
T PRK12809 499 ---------------------AREEGVEFQFNVQPQYIACDEDGRLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPAD 557 (639)
T ss_pred ---------------------HHHcCCeEEeccCCEEEEECCCCeEEEEEEEEEEecCcCCCCCccceecCCceEEEECC
Confidence 1157999999999999987666788877552 1210 124566789999
Q ss_pred eEEEccccCCccCC----CCCcccCCCccccC
Q psy4525 315 IAFRSIGYQSRCVD----SDIPFNEKSCTVIP 342 (388)
Q Consensus 315 ~Vi~a~G~~p~~~~----~~l~~~~~~gi~l~ 342 (388)
.||+|+|+.|+... .++.+++++.+.+|
T Consensus 558 ~Vi~AiG~~p~~~~~~~~~gl~~~~~G~i~vd 589 (639)
T PRK12809 558 VLIMAFGFQAHAMPWLQGSGIKLDKWGLIQTG 589 (639)
T ss_pred EEEECcCCCCCccccccccCcccCCCCCEEeC
Confidence 99999999997521 23445543334444
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.1e-29 Score=257.03 Aligned_cols=253 Identities=24% Similarity=0.339 Sum_probs=185.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
.+.++|+||||||||++||..|++ .|++|+|||+.+.+||.+++++ |.+....++.....+++.+.|++++.++.+
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar--~G~~VtV~Ek~~~~GG~lr~~I-P~~Rlp~evL~~die~l~~~GVe~~~gt~V- 612 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLAR--AGHPVTVFEREENAGGVVKNII-PQFRIPAELIQHDIEFVKAHGVKFEFGCSP- 612 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHH--cCCeEEEEecccccCcceeeec-ccccccHHHHHHHHHHHHHcCCEEEeCcee-
Confidence 457899999999999999999999 8999999999999999999987 888777777777777888889999998876
Q ss_pred EEeeeccccc-ccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHH
Q psy4525 91 QDISLGDLTN-AYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVAR 169 (388)
Q Consensus 91 ~~~~~~~~~~-~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~ 169 (388)
+++.++... .||+||||||+.+++.++++|.+ ++++++.+++..++... .....+++|+|||||++|+|+|.
T Consensus 613 -di~le~L~~~gYDaVILATGA~~~~~l~IpG~~-~gV~saldfL~~~k~~~-----~~~~~GKrVVVIGGGnVAmD~Ar 685 (1019)
T PRK09853 613 -DLTVEQLKNEGYDYVVVAIGADKNGGLKLEGGN-QNVIKALPFLEEYKNKG-----TALKLGKHVVVVGGGNTAMDAAR 685 (1019)
T ss_pred -EEEhhhheeccCCEEEECcCCCCCCCCCCCCcc-CCceehHHHHHHHhhhc-----ccccCCCEEEEECCChHHHHHHH
Confidence 344444433 59999999999876677888865 67888888775542111 12234899999999999999998
Q ss_pred HhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchh
Q psy4525 170 ILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPR 249 (388)
Q Consensus 170 ~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 249 (388)
.+. +..++++|++++|+.....+....++.+
T Consensus 686 ~a~-------------------RlgGakeVTLVyRr~~~~MPA~~eEle~------------------------------ 716 (1019)
T PRK09853 686 AAL-------------------RVPGVEKVTVVYRRTKQEMPAWREEYEE------------------------------ 716 (1019)
T ss_pred HHH-------------------hcCCCceEEEEEccCcccccccHHHHHH------------------------------
Confidence 654 1134568999999865333322222211
Q ss_pred hHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEc------cCc--cccCCceeEEecceEEEccc
Q psy4525 250 KRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFA------NQQ--ALVTEDTELIPSGIAFRSIG 321 (388)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~------~~~--~~~~~~~~~l~~D~Vi~a~G 321 (388)
.+ ++||+++++..+.++.. ++++...... +++ .+.++++.+++||.||+|+|
T Consensus 717 -----Al-------------eeGVe~~~~~~p~~I~~--dG~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG 776 (1019)
T PRK09853 717 -----AL-------------EDGVEFKELLNPESFDA--DGTLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIG 776 (1019)
T ss_pred -----HH-------------HcCCEEEeCCceEEEEc--CCcEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCC
Confidence 11 46899999999999964 3444322111 121 23456778999999999999
Q ss_pred cCCccCC---CCCcccCCCccccCC
Q psy4525 322 YQSRCVD---SDIPFNEKSCTVIPK 343 (388)
Q Consensus 322 ~~p~~~~---~~l~~~~~~gi~l~~ 343 (388)
.+|+... .+++++..+.+.+++
T Consensus 777 ~~Pntelle~~GL~ld~~G~I~VDe 801 (1019)
T PRK09853 777 EQVDTELLKANGIPLDKKGWPVVDA 801 (1019)
T ss_pred CcCChhHHHhcCccccCCCCEEeCC
Confidence 9998742 456666555566553
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=242.31 Aligned_cols=286 Identities=23% Similarity=0.314 Sum_probs=191.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
...++|+|||+||||+++|..|++ .|++|++||+.+.+||.+++++ |.+....++.....+++.+.|++++.++.+.
T Consensus 141 ~~~~~VvIIGaGpAGl~aA~~l~~--~G~~V~vie~~~~~GG~l~~gi-p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 217 (471)
T PRK12810 141 RTGKKVAVVGSGPAGLAAADQLAR--AGHKVTVFERADRIGGLLRYGI-PDFKLEKEVIDRRIELMEAEGIEFRTNVEVG 217 (471)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHh--CCCcEEEEecCCCCCceeeecC-CcccCCHHHHHHHHHHHHhCCcEEEeCCEEC
Confidence 346899999999999999999999 8999999999999999999998 7666667777777778888999999998876
Q ss_pred EEeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCC--CCccccCcCCCCCeEEEEcCChHHHHHH
Q psy4525 91 QDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGL--PEDASLDLSLDCEEATILGQGNVAMDVA 168 (388)
Q Consensus 91 ~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~vvVIGgG~sg~e~a 168 (388)
.+++.......||+||+|||+..++.+++||.+.++|+++.+|+...... ...........+++|+|||+|++|+|+|
T Consensus 218 ~~~~~~~~~~~~d~vvlAtGa~~~~~l~ipG~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~gk~VvVIGgG~~g~e~A 297 (471)
T PRK12810 218 KDITAEELLAEYDAVFLGTGAYKPRDLGIPGRDLDGVHFAMDFLIQNTRRVLGDETEPFISAKGKHVVVIGGGDTGMDCV 297 (471)
T ss_pred CcCCHHHHHhhCCEEEEecCCCCCCcCCCCCccCCCcEEHHHHHHHHHhhhccccccccccCCCCEEEEECCcHHHHHHH
Confidence 55444444458999999999986568899999999999887776432110 0000001234589999999999999999
Q ss_pred HHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccch
Q psy4525 169 RILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARP 248 (388)
Q Consensus 169 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 248 (388)
..+. ..++++|+++.+....... . .... ..+..
T Consensus 298 ~~~~--------------------~~ga~~Vt~~~~~~~~~~~---~--------------~~~~----------~~~~~ 330 (471)
T PRK12810 298 GTAI--------------------RQGAKSVTQRDIMPMPPSR---R--------------NKNN----------PWPYW 330 (471)
T ss_pred HHHH--------------------HcCCCeEEEccccCCCccc---c--------------cccc----------CCccc
Confidence 8654 3566778855433211000 0 0000 00000
Q ss_pred -hhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEcc-----Ccc-ccCCceeEEecceEEEccc
Q psy4525 249 -RKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFAN-----QQA-LVTEDTELIPSGIAFRSIG 321 (388)
Q Consensus 249 -~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~-----~~~-~~~~~~~~l~~D~Vi~a~G 321 (388)
.......+ .+.||+++++..++++..+ ++++.++++.. ++. ...++.++++||.||+|+|
T Consensus 331 ~~~~~~~~~------------~~~GV~i~~~~~~~~i~~~-~g~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G 397 (471)
T PRK12810 331 PMKLEVSNA------------HEEGVEREFNVQTKEFEGE-NGKVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMG 397 (471)
T ss_pred chHHHHHHH------------HHcCCeEEeccCceEEEcc-CCEEEEEEEEEEEecCCCccccCCceEEEECCEEEECcC
Confidence 00001111 2579999999999999753 57888776542 110 1234557899999999999
Q ss_pred cCCcc--CC--CCCcccCCCccccCCCCCCeecchhhHHhHH
Q psy4525 322 YQSRC--VD--SDIPFNEKSCTVIPKEGVPVVTWEGWKAIDK 359 (388)
Q Consensus 322 ~~p~~--~~--~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~ 359 (388)
++|+. +. .++.++.++.+.+|+.....-..+.|...|+
T Consensus 398 ~~p~~~~l~~~~gl~~~~~g~i~vd~~~~~Ts~~gVfa~GD~ 439 (471)
T PRK12810 398 FTGPEAGLLAQFGVELDERGRVAAPDNAYQTSNPKVFAAGDM 439 (471)
T ss_pred cCCCchhhccccCcccCCCCCEEeCCCcccCCCCCEEEcccc
Confidence 99984 22 3455555455556522222112345555554
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.1e-27 Score=224.75 Aligned_cols=278 Identities=22% Similarity=0.251 Sum_probs=182.3
Q ss_pred ccCCCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceE
Q psy4525 8 TISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNI 87 (388)
Q Consensus 8 ~~~~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~ 87 (388)
+.+..+++|+|||+|++|+++|..|++ .|.+|++||+.+.+||.+.++..+.....+.+.... +.+.+.+++++.++
T Consensus 13 ~~~~~~~~VvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~-~~l~~~~i~~~~~~ 89 (352)
T PRK12770 13 KPPPTGKKVAIIGAGPAGLAAAGYLAC--LGYEVHVYDKLPEPGGLMLFGIPEFRIPIERVREGV-KELEEAGVVFHTRT 89 (352)
T ss_pred CCCCCCCEEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCceeeecCcccccCHHHHHHHH-HHHHhCCeEEecCc
Confidence 344567899999999999999999999 899999999999999988776533222223333333 34445589988887
Q ss_pred EEEEE---------------eeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCc-ccc--CcC
Q psy4525 88 CLGQD---------------ISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPED-ASL--DLS 149 (388)
Q Consensus 88 ~v~~~---------------~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~-~~~--~~~ 149 (388)
.+... +..++....||+||||||+..++.+++||.+.++++++.++...+...... ... ...
T Consensus 90 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtGs~~~~~~~ipg~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (352)
T PRK12770 90 KVCCGEPLHEEEGDEFVERIVSLEELVKKYDAVLIATGTWKSRKLGIPGEDLPGVYSALEYLFRIRAAKLGYLPWEKVPP 169 (352)
T ss_pred EEeeccccccccccccccccCCHHHHHhhCCEEEEEeCCCCCCcCCCCCccccCceeHHHHHHHhhhccccccccccccc
Confidence 66321 011111237999999999954467889998888898876655332211110 000 112
Q ss_pred CCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEE
Q psy4525 150 LDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTV 229 (388)
Q Consensus 150 ~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~ 229 (388)
..+++++|||+|++|+|+|..|. ..+.++|+++.|++.+..+...
T Consensus 170 ~~g~~vvViG~G~~g~e~A~~l~--------------------~~g~~~Vtvi~~~~~~~~~~~~--------------- 214 (352)
T PRK12770 170 VEGKKVVVVGAGLTAVDAALEAV--------------------LLGAEKVYLAYRRTINEAPAGK--------------- 214 (352)
T ss_pred cCCCEEEEECCCHHHHHHHHHHH--------------------HcCCCeEEEEeecchhhCCCCH---------------
Confidence 34789999999999999999775 2455569999987543221111
Q ss_pred ecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCcc-------
Q psy4525 230 FRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQA------- 302 (388)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~------- 302 (388)
+....+ ..+||+++++..++++.. ++++..+++.+...
T Consensus 215 ---------------------~~~~~l------------~~~gi~i~~~~~v~~i~~--~~~~~~v~~~~~~~~~~~~~~ 259 (352)
T PRK12770 215 ---------------------YEIERL------------IARGVEFLELVTPVRIIG--EGRVEGVELAKMRLGEPDESG 259 (352)
T ss_pred ---------------------HHHHHH------------HHcCCEEeeccCceeeec--CCcEeEEEEEEEEecCcCccc
Confidence 111112 257999999999999974 34566666542210
Q ss_pred -----ccCCceeEEecceEEEccccCCccCC----CCCcccCCCccccCCCCCCeecchhhHHhHH
Q psy4525 303 -----LVTEDTELIPSGIAFRSIGYQSRCVD----SDIPFNEKSCTVIPKEGVPVVTWEGWKAIDK 359 (388)
Q Consensus 303 -----~~~~~~~~l~~D~Vi~a~G~~p~~~~----~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~ 359 (388)
..++++++++||.||+|+|++|++.. .++.++..+.+.+|+.... -..+.|...|+
T Consensus 260 ~~~~~~~~~~~~~i~~D~vi~a~G~~p~~~l~~~~~g~~~~~~g~i~vd~~~~t-~~~~vyaiGD~ 324 (352)
T PRK12770 260 RPRPVPIPGSEFVLEADTVVFAIGEIPTPPFAKECLGIELNRKGEIVVDEKHMT-SREGVFAAGDV 324 (352)
T ss_pred CcCceecCCCeEEEECCEEEECcccCCCchhhhcccCceecCCCcEeeCCCccc-CCCCEEEEccc
Confidence 12456678999999999999998742 3455555555666665432 12355555554
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.2e-27 Score=243.30 Aligned_cols=251 Identities=23% Similarity=0.339 Sum_probs=178.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++|+||||||||++||..|++ .|++|+|||+.+.+||.+++++ |.+....+...+..+++.+.|++++.++..
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LAr--~G~~VTV~Ek~~~lGG~l~~~I-P~~rlp~e~l~~~ie~l~~~GVe~~~g~~~-- 610 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLAR--AGHPVTVFEKKEKPGGVVKNII-PEFRISAESIQKDIELVKFHGVEFKYGCSP-- 610 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHHH--CCCeEEEEecccccCceeeecc-cccCCCHHHHHHHHHHHHhcCcEEEEeccc--
Confidence 46899999999999999999999 8999999999999999999887 777666777777777777889999887432
Q ss_pred Eeeecccc-cccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHH
Q psy4525 92 DISLGDLT-NAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARI 170 (388)
Q Consensus 92 ~~~~~~~~-~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~ 170 (388)
++++.+.. ..||+||||||+.++++++++|.. ++++.+.+++..+.... .....+++|+|||||++|+|+|..
T Consensus 611 d~~ve~l~~~gYDaVIIATGA~~~~~l~I~G~~-~~v~~avefL~~~~~~~-----~~~~~GK~VVVIGGGnvAmD~Ar~ 684 (1012)
T TIGR03315 611 DLTVAELKNQGYKYVILAIGAWKHGPLRLEGGG-ERVLKSLEFLRAFKEGP-----TINPLGKHVVVVGGGNTAMDAARA 684 (1012)
T ss_pred ceEhhhhhcccccEEEECCCCCCCCCCCcCCCC-cceeeHHHHHHHhhccc-----cccccCCeEEEECCCHHHHHHHHH
Confidence 23333333 369999999999876677888854 57777777775433211 112348999999999999999986
Q ss_pred hccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhh
Q psy4525 171 LLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRK 250 (388)
Q Consensus 171 L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 250 (388)
+. +..++++|++++|+.....+....++.+
T Consensus 685 a~-------------------Rl~Ga~kVtLVyRr~~~~Mpa~~eEl~~------------------------------- 714 (1012)
T TIGR03315 685 AL-------------------RVPGVEKVTVVYRRTKRYMPASREELEE------------------------------- 714 (1012)
T ss_pred HH-------------------HhCCCceEEEEEccCccccccCHHHHHH-------------------------------
Confidence 54 1136678999999864333322222211
Q ss_pred HHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEc------cCc--cccCCceeEEecceEEEcccc
Q psy4525 251 RLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFA------NQQ--ALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~------~~~--~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
.+ +.||+++++..+.++. ++.+...... +++ .+.+++..+++||.||+|+|+
T Consensus 715 ----al-------------eeGVe~~~~~~p~~I~---~g~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~ 774 (1012)
T TIGR03315 715 ----AL-------------EDGVDFKELLSPESFE---DGTLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGE 774 (1012)
T ss_pred ----HH-------------HcCCEEEeCCceEEEE---CCeEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCC
Confidence 11 4689999999998887 2333322111 121 123466678999999999999
Q ss_pred CCccCC---CCCcccCCCccccCC
Q psy4525 323 QSRCVD---SDIPFNEKSCTVIPK 343 (388)
Q Consensus 323 ~p~~~~---~~l~~~~~~gi~l~~ 343 (388)
+|+... .+++++..+.+.+|.
T Consensus 775 ~Pnt~lle~~GL~ld~~G~I~VD~ 798 (1012)
T TIGR03315 775 QVDTDLLQKNGIPLDEYGWPVVNQ 798 (1012)
T ss_pred cCChHHHHhcCcccCCCCCEEeCC
Confidence 998732 456666555566664
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=229.03 Aligned_cols=246 Identities=14% Similarity=0.183 Sum_probs=166.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCc---------------------------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHP--------------------------- 63 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~--------------------------- 63 (388)
..+||+|||+||||++||..+++ .|.+|+|||+. .+||.| +.||.|.+.
T Consensus 4 ~~~DvvVIG~GpaG~~aA~~aa~--~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 80 (463)
T PRK06370 4 QRYDAIVIGAGQAGPPLAARAAG--LGMKVALIERG-LLGGTCVNTGCVPTKTLIASARAAHLARRAAEYGVSVGGPVSV 80 (463)
T ss_pred ccccEEEECCCHHHHHHHHHHHh--CCCeEEEEecC-ccCCceeccccCcHHHHHHHHHHHHHHHHHHhcCcccCccCcc
Confidence 45899999999999999999999 89999999987 566665 667765421
Q ss_pred chhHHH-----------HHHHHhhcCC-CcEEEceEEEE---EEeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCee
Q psy4525 64 EVKNVI-----------NTFTKTGDNP-RVNFYGNICLG---QDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNII 128 (388)
Q Consensus 64 ~~~~~~-----------~~~~~~~~~~-~i~~~~~~~v~---~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~ 128 (388)
....+. ..+..++++. +++++.++.+. ..+++++....||+||||||+.+ +.|++||.+..+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~v~~g~~~~~~~~~v~v~~~~~~~d~lViATGs~p-~~p~i~G~~~~~~~ 159 (463)
T PRK06370 81 DFKAVMARKRRIRARSRHGSEQWLRGLEGVDVFRGHARFESPNTVRVGGETLRAKRIFINTGARA-AIPPIPGLDEVGYL 159 (463)
T ss_pred CHHHHHHHHHHHHHHHHHhHHHHHhcCCCcEEEEEEEEEccCCEEEECcEEEEeCEEEEcCCCCC-CCCCCCCCCcCceE
Confidence 111111 2334455666 89988776542 12344333458999999999988 58889998766676
Q ss_pred ecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcc
Q psy4525 129 SARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGAL 208 (388)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~ 208 (388)
+..++.. ....+++|+|||+|++|+|+|..|. +.+ .+|+++.|.+.+
T Consensus 160 ~~~~~~~------------~~~~~~~vvVIGgG~~g~E~A~~l~--------------------~~G-~~Vtli~~~~~~ 206 (463)
T PRK06370 160 TNETIFS------------LDELPEHLVIIGGGYIGLEFAQMFR--------------------RFG-SEVTVIERGPRL 206 (463)
T ss_pred cchHhhC------------ccccCCEEEEECCCHHHHHHHHHHH--------------------HcC-CeEEEEEcCCCC
Confidence 6655431 1123689999999999999999776 233 579999998765
Q ss_pred cccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCC
Q psy4525 209 QVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLND 288 (388)
Q Consensus 209 ~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~ 288 (388)
...+. +++. +.+.+.+ .+.||++++++.+.++..++
T Consensus 207 l~~~~-~~~~-------------------------------~~l~~~l------------~~~GV~i~~~~~V~~i~~~~ 242 (463)
T PRK06370 207 LPRED-EDVA-------------------------------AAVREIL------------EREGIDVRLNAECIRVERDG 242 (463)
T ss_pred CcccC-HHHH-------------------------------HHHHHHH------------HhCCCEEEeCCEEEEEEEcC
Confidence 43321 1111 1122222 26799999999999998643
Q ss_pred CCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 289 NGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 289 ~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
++. .+.+. ..+++.++++|.||+|+|++||+.. .++.+++++.+.+|++.
T Consensus 243 ~~~--~v~~~-----~~~~~~~i~~D~Vi~A~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~l 297 (463)
T PRK06370 243 DGI--AVGLD-----CNGGAPEITGSHILVAVGRVPNTDDLGLEAAGVETDARGYIKVDDQL 297 (463)
T ss_pred CEE--EEEEE-----eCCCceEEEeCEEEECcCCCcCCCCcCchhhCceECCCCcEeECcCC
Confidence 232 22221 1234567999999999999999751 23455555557777643
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=224.65 Aligned_cols=249 Identities=16% Similarity=0.213 Sum_probs=169.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcc-------------------------
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPE------------------------- 64 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~------------------------- 64 (388)
...+|++|||+||||..+|..+++ .|.++.++|+...+||.| ++||.|.+..
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~--~G~kvalvE~~~~lGGtCln~GCIPsK~Ll~~a~~~~~~~~~~~~~Gi~~~~~~ 79 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQ--LGLKVALVEKGERLGGTCLNVGCIPSKALLHAAEVIEEARHAAKEYGISAEVPK 79 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHh--CCCCEEEEeecCCcCceEEeeCccccHHHHHHHHHHHHHhhcccccceecCCCC
Confidence 346899999999999999999999 898899999998889888 8899876421
Q ss_pred --hhHHHH-----------HHHHhhcCCCcEEEceEE-EE--EEeeecc---cccccCEEEEeeCCCCCCCCCCCCCCCC
Q psy4525 65 --VKNVIN-----------TFTKTGDNPRVNFYGNIC-LG--QDISLGD---LTNAYHAVVLTYGADNDKKLNIPGEDGK 125 (388)
Q Consensus 65 --~~~~~~-----------~~~~~~~~~~i~~~~~~~-v~--~~~~~~~---~~~~yd~lvlAtG~~~~~~~~i~g~~~~ 125 (388)
.+++.. .....++..+++++.+.. +. ..+.+.. ....++++|||||++| +.|++++.+..
T Consensus 80 id~~~~~~~k~~v~~~~~~~~~~l~~~~~V~vi~G~a~f~~~~~v~V~~~~~~~~~a~~iiIATGS~p-~~~~~~~~~~~ 158 (454)
T COG1249 80 IDFEKLLARKDKVVRLLTGGVEGLLKKNGVDVIRGEARFVDPHTVEVTGEDKETITADNIIIATGSRP-RIPPGPGIDGA 158 (454)
T ss_pred cCHHHHHHHHHHHHHHHhhhHHHHHhhCCCEEEEEEEEECCCCEEEEcCCCceEEEeCEEEEcCCCCC-cCCCCCCCCCC
Confidence 111111 122344556777765443 21 2344433 2347999999999999 58888887766
Q ss_pred CeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeec
Q psy4525 126 NIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRR 205 (388)
Q Consensus 126 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~ 205 (388)
.+++..+.+.. ..-+++++|||||.+|+|+|..++ +.| .+||++.|.
T Consensus 159 ~~~~s~~~l~~------------~~lP~~lvIiGgG~IGlE~a~~~~--------------------~LG-~~VTiie~~ 205 (454)
T COG1249 159 RILDSSDALFL------------LELPKSLVIVGGGYIGLEFASVFA--------------------ALG-SKVTVVERG 205 (454)
T ss_pred eEEechhhccc------------ccCCCEEEEECCCHHHHHHHHHHH--------------------HcC-CcEEEEecC
Confidence 67766664421 123799999999999999999776 234 479999999
Q ss_pred CcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeee
Q psy4525 206 GALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFK 285 (388)
Q Consensus 206 ~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~ 285 (388)
+.+...+. +++++ .+...|. +.|+.+++++.++++.
T Consensus 206 ~~iLp~~D-~ei~~-------------------------------~~~~~l~------------~~gv~i~~~~~v~~~~ 241 (454)
T COG1249 206 DRILPGED-PEISK-------------------------------ELTKQLE------------KGGVKILLNTKVTAVE 241 (454)
T ss_pred CCCCCcCC-HHHHH-------------------------------HHHHHHH------------hCCeEEEccceEEEEE
Confidence 98755433 22221 1222222 5789999999999998
Q ss_pred eCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCCCCCcccCCCccccCCCCCCeec
Q psy4525 286 LNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSCTVIPKEGVPVVT 350 (388)
Q Consensus 286 ~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~~~l~~~~~~gi~l~~~~~~~~~ 350 (388)
..+++ ..+.+++ +++.++++|.|++|+|.+||+.. |.++ +-|+.++++|...+|
T Consensus 242 ~~~~~--v~v~~~~------g~~~~~~ad~vLvAiGR~Pn~~~--LgLe-~~Gv~~~~rg~I~VD 295 (454)
T COG1249 242 KKDDG--VLVTLED------GEGGTIEADAVLVAIGRKPNTDG--LGLE-NAGVELDDRGFIKVD 295 (454)
T ss_pred ecCCe--EEEEEec------CCCCEEEeeEEEEccCCccCCCC--CChh-hcCceECCCCCEEeC
Confidence 65433 4444432 22227999999999999999952 3332 234444444444444
|
|
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-26 Score=229.45 Aligned_cols=275 Identities=21% Similarity=0.268 Sum_probs=183.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++|+|||+||||+++|..|++ .|++|+|||+.+.+||+++|++ |.+....++.....+++++.|++++.++.++.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~~--~g~~V~v~e~~~~~gG~l~~gi-p~~~~~~~~~~~~~~~~~~~Gv~~~~~~~v~~ 218 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLNR--AGHTVTVFEREDRCGGLLMYGI-PNMKLDKAIVDRRIDLLSAEGIDFVTNTEIGV 218 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH--cCCeEEEEecCCCCCceeeccC-CCccCCHHHHHHHHHHHHhCCCEEECCCEeCC
Confidence 45899999999999999999999 8999999999999999999998 76666666777777788889999999988765
Q ss_pred EeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCC---Ccccc-CcCCCCCeEEEEcCChHHHHH
Q psy4525 92 DISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLP---EDASL-DLSLDCEEATILGQGNVAMDV 167 (388)
Q Consensus 92 ~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~---~~~~~-~~~~~~~~vvVIGgG~sg~e~ 167 (388)
+++.+.....||+||+|||+..++.+++||.+.++|+++.+|+....... ..... .....+++|+|||+|++|+|+
T Consensus 219 ~~~~~~~~~~~d~VilAtGa~~~~~l~i~G~~~~gV~~~~~~l~~~~~~~~~~~~~~~~~~~~~gk~VvViGgG~~g~d~ 298 (485)
T TIGR01317 219 DISADELKEQFDAVVLAGGATKPRDLPIPGRELKGIHYAMEFLPSATKALLGKDFKDIIFIKAKGKKVVVIGGGDTGADC 298 (485)
T ss_pred ccCHHHHHhhCCEEEEccCCCCCCcCCCCCcCCCCcEeHHHHHHHHhhhhccccccccccccCCCCEEEEECCcHHHHHH
Confidence 54443334579999999999855788999999999998877764322110 00000 112457999999999999999
Q ss_pred HHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccc
Q psy4525 168 ARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLAR 247 (388)
Q Consensus 168 a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 247 (388)
|..+. +.++++|+++++.+.........+ .+|.. ++
T Consensus 299 a~~a~--------------------~~ga~~V~vv~~~~~~~~~~~~~~-----~~~~~-------------------~~ 334 (485)
T TIGR01317 299 VGTSL--------------------RHGAASVHQFEIMPKPPEARAKDN-----PWPEW-------------------PR 334 (485)
T ss_pred HHHHH--------------------HcCCCEEEEEEecCCChhhccccc-----CCCcc-------------------ch
Confidence 87543 356678999987754321100000 00000 00
Q ss_pred hhhHHHHHHHhhCCCCCCCCCCceeEE-EEecCcceeeeeCCCCceeEEEEc--------cCc---cccCCceeEEecce
Q psy4525 248 PRKRLTELILKTSNPDESKSNCSKYFR-PIFLRSPTEFKLNDNGAITGINFA--------NQQ---ALVTEDTELIPSGI 315 (388)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~gv~-~~~~~~~~~i~~~~~~~v~~v~~~--------~~~---~~~~~~~~~l~~D~ 315 (388)
. .++...+... ....|+. ++++..+.++.+++++++.++++. +++ ....++.++++||.
T Consensus 335 ~-~e~~~a~~e~--------~~~~gv~~~~~~~~~~~i~~~~~g~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~ 405 (485)
T TIGR01317 335 V-YRVDYAHEEA--------AAHYGRDPREYSILTKEFIGDDEGKVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADL 405 (485)
T ss_pred h-hhhHHHHHhh--------hhhcCccceEEecCcEEEEEcCCCeEEEEEEEEEEeccCCCCCccceecCCceEEEECCE
Confidence 0 0000001100 1124554 467888999987555788877642 222 12245567899999
Q ss_pred EEEccccC-CccCC---CCCcccCCCccccC
Q psy4525 316 AFRSIGYQ-SRCVD---SDIPFNEKSCTVIP 342 (388)
Q Consensus 316 Vi~a~G~~-p~~~~---~~l~~~~~~gi~l~ 342 (388)
||+|+|+. |+... .++.++.++.+.++
T Consensus 406 Vi~AiG~~~p~~~~~~~~gl~~~~~G~i~~~ 436 (485)
T TIGR01317 406 VLLAMGFVGPEQILLDDFGVKKTRRGNISAG 436 (485)
T ss_pred EEEccCcCCCccccccccCcccCCCCCEEec
Confidence 99999996 76531 34555544334343
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.4e-26 Score=224.80 Aligned_cols=242 Identities=17% Similarity=0.201 Sum_probs=162.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCc---------------------------c
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHP---------------------------E 64 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~---------------------------~ 64 (388)
.+||+||||||||++||..+++ .|.+|+|||+. .+||.| ++||.|... .
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~--~G~~V~liE~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (450)
T TIGR01421 2 HYDYLVIGGGSGGIASARRAAE--HGAKALLVEAK-KLGGTCVNVGCVPKKVMWYASDLAERMHDAADYGFYQNLENTFN 78 (450)
T ss_pred CCCEEEECcCHHHHHHHHHHHH--CCCcEEEeccc-ccccceeccCcCccHHHHHHHHHHHHHhHHhhcCcccCCcCccC
Confidence 4899999999999999999999 89999999996 688876 668877531 0
Q ss_pred hh-----------HHHHHHHHhhcCCCcEEEceEEEEE---EeeecccccccCEEEEeeCCCCCCCC-CCCCCCCCCeee
Q psy4525 65 VK-----------NVINTFTKTGDNPRVNFYGNICLGQ---DISLGDLTNAYHAVVLTYGADNDKKL-NIPGEDGKNIIS 129 (388)
Q Consensus 65 ~~-----------~~~~~~~~~~~~~~i~~~~~~~v~~---~~~~~~~~~~yd~lvlAtG~~~~~~~-~i~g~~~~~v~~ 129 (388)
.. .+.+.+...+++.+++++.++.... .+.++.....||+||||||+.+ +.| ++||.+. .++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~~~~~~d~vIiAtGs~p-~~p~~i~g~~~--~~~ 155 (450)
T TIGR01421 79 WPELKEKRDAYVDRLNGIYQKNLEKNKVDVIFGHARFTKDGTVEVNGRDYTAPHILIATGGKP-SFPENIPGAEL--GTD 155 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECCEEEEeCEEEEecCCCC-CCCCCCCCCce--eEc
Confidence 11 1122244456667899887765321 2333333458999999999998 456 7887641 222
Q ss_pred cccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCccc
Q psy4525 130 ARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQ 209 (388)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~ 209 (388)
..++.. ....+++++|||||++|+|+|..|+ ..+ .+||++.|.+.+.
T Consensus 156 ~~~~~~------------~~~~~~~vvIIGgG~iG~E~A~~l~--------------------~~g-~~Vtli~~~~~il 202 (450)
T TIGR01421 156 SDGFFA------------LEELPKRVVIVGAGYIAVELAGVLH--------------------GLG-SETHLVIRHERVL 202 (450)
T ss_pred HHHhhC------------ccccCCeEEEECCCHHHHHHHHHHH--------------------HcC-CcEEEEecCCCCC
Confidence 223221 1113689999999999999999876 223 5799999987765
Q ss_pred ccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCC
Q psy4525 210 VAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDN 289 (388)
Q Consensus 210 ~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~ 289 (388)
..+. ++++ +.+.+.+. ..||++++++.++++..+.+
T Consensus 203 ~~~d-~~~~-------------------------------~~~~~~l~------------~~gI~i~~~~~v~~i~~~~~ 238 (450)
T TIGR01421 203 RSFD-SMIS-------------------------------ETITEEYE------------KEGINVHKLSKPVKVEKTVE 238 (450)
T ss_pred cccC-HHHH-------------------------------HHHHHHHH------------HcCCEEEcCCEEEEEEEeCC
Confidence 3332 2222 12222222 67999999999999986433
Q ss_pred CceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 290 GAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 290 ~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
+. ..+.+. +..+.++||.||+|+|++||+.. .++.+++++.+.+|+..
T Consensus 239 ~~-~~v~~~-------~g~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~ 291 (450)
T TIGR01421 239 GK-LVIHFE-------DGKSIDDVDELIWAIGRKPNTKGLGLENVGIKLNEKGQIIVDEYQ 291 (450)
T ss_pred ce-EEEEEC-------CCcEEEEcCEEEEeeCCCcCcccCCccccCcEECCCCcEEeCCCC
Confidence 32 233331 11257999999999999999842 34566665557776543
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-26 Score=235.28 Aligned_cols=265 Identities=17% Similarity=0.171 Sum_probs=180.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC----------------------------CCCCceeeCCCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP----------------------------VPFGLVRYGVAPDH 62 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~----------------------------~~gg~~~~g~~p~~ 62 (388)
.++++|+|||+||||++||.+|++ .|++|++||+.+ .+||+..||+ | +
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~--~Gh~Vtv~E~~~i~gl~~~~~~~i~~~~~~~~~L~er~p~~~GG~~~yGI-p-~ 456 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLR--SGHNVTAIDGLKITLLPFDVHKPIKFWHEYKNLLSERMPRGFGGVAEYGI-T-V 456 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHh--CCCeEEEEccccccccccccccccchhhhhccchhhhccccCCcccccCc-c-c
Confidence 467899999999999999999999 899999999752 2788999999 5 4
Q ss_pred cchhHHHHHHHHhhcC-CCcEEEceEEEEEEeeecccc-cccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCC
Q psy4525 63 PEVKNVINTFTKTGDN-PRVNFYGNICLGQDISLGDLT-NAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGL 140 (388)
Q Consensus 63 ~~~~~~~~~~~~~~~~-~~i~~~~~~~v~~~~~~~~~~-~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~ 140 (388)
...++..+.....+.. .++.++.++.++.+++.++.. ..||+|+||||+..++.+++||.+.++|+++.+|+...+..
T Consensus 457 R~~k~~l~~i~~il~~g~~v~~~~gv~lG~dit~edl~~~gyDAV~IATGA~kpr~L~IPGeda~GV~sA~DfL~~l~~~ 536 (1028)
T PRK06567 457 RWDKNNLDILRLILERNNNFKYYDGVALDFNITKEQAFDLGFDHIAFCIGAGQPKVLDIENFEAKGVKTASDFLMTLQSG 536 (1028)
T ss_pred cchHHHHHHHHHHHhcCCceEEECCeEECccCCHHHHhhcCCCEEEEeCCCCCCCCCCCCCccCCCeEEHHHHHHHHhhc
Confidence 4455555554444443 367888899998888887754 57999999999964478999999999999999988654321
Q ss_pred CCcc--ccCcCCCCCeEEEEcCChHHHHHHHHhccC-Cccc-------c-------cccCchh---------------HH
Q psy4525 141 PEDA--SLDLSLDCEEATILGQGNVAMDVARILLSP-VDQL-------K-------STDITEH---------------SL 188 (388)
Q Consensus 141 ~~~~--~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~-~~~~-------~-------~~~~~~~---------------~~ 188 (388)
.... .......+++|+|||||++|+|+|.....+ ...+ . ..++... ..
T Consensus 537 ~~~~~~~~~~~~~Gk~VVVIGGGnTAmD~ArtAlr~~~l~ve~~l~~~~~~~~~~~d~eia~~f~~h~r~~g~~~~~~~v 616 (1028)
T PRK06567 537 GAFLKNSNTNMVIRMPIAVIGGGLTSLDAATESLYYYKKQVEEFAKDYIEKDLTEEDKEIAEEFIAHAKLFKEAKNNEEL 616 (1028)
T ss_pred ccccccccCcccCCCCEEEEcCcHHHHHHHHHHHhhccchhhHHHHhhhhhhcccccHHHHHHHHHHHHhhcchhccchh
Confidence 1110 001112368999999999999999843320 0000 0 0000000 00
Q ss_pred HhhhcCCCcEEEEEeecCcccccCC---HHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCC
Q psy4525 189 EKLSTSRIKSVNLVGRRGALQVAFT---IKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDES 265 (388)
Q Consensus 189 ~~~~~~~~~~V~~i~r~~~~~~~~~---~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 265 (388)
..+.+.... |++++|+..-.+|-+ ..|+. .
T Consensus 617 ~~l~~~~G~-VtIvYRr~~~empA~~~~~eEv~-----------------------------------~----------- 649 (1028)
T PRK06567 617 RKVFNKLGG-ATVYYRGRLQDSPAYKLNHEELI-----------------------------------Y----------- 649 (1028)
T ss_pred hhhhccCCc-eEEEecCChhhCCCCCCCHHHHH-----------------------------------H-----------
Confidence 001111222 889999876554432 11211 1
Q ss_pred CCCCceeEEEEecCcceeeeeCCCCceeEEEEccCc---------ccc-------------CCceeEEecceEEEccccC
Q psy4525 266 KSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQ---------ALV-------------TEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 266 ~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~---------~~~-------------~~~~~~l~~D~Vi~a~G~~ 323 (388)
..++||.|+++..|.++..++.|++.++++..-. ... .+...+++||.||+|+|..
T Consensus 650 --A~eEGV~f~~~~~P~~i~~d~~g~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~G~~ 727 (1028)
T PRK06567 650 --ALALGVDFKENMQPLRINVDKYGHVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAIGIE 727 (1028)
T ss_pred --HHHcCcEEEecCCcEEEEecCCCeEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEecccC
Confidence 1268999999999999988767899988876211 000 1144789999999999999
Q ss_pred CccCC
Q psy4525 324 SRCVD 328 (388)
Q Consensus 324 p~~~~ 328 (388)
||+..
T Consensus 728 ~~~~~ 732 (1028)
T PRK06567 728 NNTQF 732 (1028)
T ss_pred Ccccc
Confidence 98753
|
|
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.7e-26 Score=222.23 Aligned_cols=242 Identities=16% Similarity=0.192 Sum_probs=164.1
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC-CCCce-eeCCCCCCcc---------hhHHH-----------H
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV-PFGLV-RYGVAPDHPE---------VKNVI-----------N 70 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~-~gg~~-~~g~~p~~~~---------~~~~~-----------~ 70 (388)
.+||+||||||||++||..+++ .|.+|+|||+.+. +||.+ +.||.|.+.. ..++. .
T Consensus 3 ~~dvvVIG~GpaG~~aA~~l~~--~g~~V~liE~~~~~~GG~c~~~gciP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (438)
T PRK07251 3 TYDLIVIGFGKAGKTLAAKLAS--AGKKVALVEESKAMYGGTCINIGCIPTKTLLVAAEKNLSFEQVMATKNTVTSRLRG 80 (438)
T ss_pred ccCEEEECCCHHHHHHHHHHHh--CCCEEEEEecCCcccceeeecCccccchHhhhhhhcCCCHHHHHHHHHHHHHHHHH
Confidence 5899999999999999999999 8999999999864 68876 6787776641 12221 1
Q ss_pred HHHHhhcCCCcEEEceEEEE---EEeeec--c--cccccCEEEEeeCCCCCCCCCCCCC-CCCCeeecccccccccCCCC
Q psy4525 71 TFTKTGDNPRVNFYGNICLG---QDISLG--D--LTNAYHAVVLTYGADNDKKLNIPGE-DGKNIISARSFVGWYNGLPE 142 (388)
Q Consensus 71 ~~~~~~~~~~i~~~~~~~v~---~~~~~~--~--~~~~yd~lvlAtG~~~~~~~~i~g~-~~~~v~~~~~~~~~~~~~~~ 142 (388)
...+.+.+.+++++.+.... ..+.+. + ....||+||||||+.+ +.|++||. +.++++++.++...
T Consensus 81 ~~~~~~~~~gV~~~~g~~~~~~~~~v~v~~~~~~~~~~~d~vViATGs~~-~~p~i~G~~~~~~v~~~~~~~~~------ 153 (438)
T PRK07251 81 KNYAMLAGSGVDLYDAEAHFVSNKVIEVQAGDEKIELTAETIVINTGAVS-NVLPIPGLADSKHVYDSTGIQSL------ 153 (438)
T ss_pred HHHHHHHhCCCEEEEEEEEEccCCEEEEeeCCCcEEEEcCEEEEeCCCCC-CCCCCCCcCCCCcEEchHHHhcc------
Confidence 22345566788888665321 122222 1 1248999999999998 57889986 35567766655421
Q ss_pred ccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhc
Q psy4525 143 DASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTK 222 (388)
Q Consensus 143 ~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~ 222 (388)
...+++|+|||+|.+|+|+|..|+ +.+ .+|+++.|.+.+...+ +++++
T Consensus 154 ------~~~~~~vvIIGgG~~g~e~A~~l~--------------------~~g-~~Vtli~~~~~~l~~~-~~~~~---- 201 (438)
T PRK07251 154 ------ETLPERLGIIGGGNIGLEFAGLYN--------------------KLG-SKVTVLDAASTILPRE-EPSVA---- 201 (438)
T ss_pred ------hhcCCeEEEECCCHHHHHHHHHHH--------------------HcC-CeEEEEecCCccCCCC-CHHHH----
Confidence 123689999999999999999775 233 5799999987654332 12221
Q ss_pred CCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCcc
Q psy4525 223 LPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQA 302 (388)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~ 302 (388)
+.+.+.+ .+.||++++++.++++..++ +.+ .+
T Consensus 202 ---------------------------~~~~~~l------------~~~GI~i~~~~~V~~i~~~~-~~v-~v------- 233 (438)
T PRK07251 202 ---------------------------ALAKQYM------------EEDGITFLLNAHTTEVKNDG-DQV-LV------- 233 (438)
T ss_pred ---------------------------HHHHHHH------------HHcCCEEEcCCEEEEEEecC-CEE-EE-------
Confidence 1111222 25799999999999997532 222 11
Q ss_pred ccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 303 LVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 303 ~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
..+++++++|.||+|+|++|+... .++.++.++.+.+|+..
T Consensus 234 --~~~g~~i~~D~viva~G~~p~~~~l~l~~~~~~~~~~g~i~vd~~~ 279 (438)
T PRK07251 234 --VTEDETYRFDALLYATGRKPNTEPLGLENTDIELTERGAIKVDDYC 279 (438)
T ss_pred --EECCeEEEcCEEEEeeCCCCCcccCCchhcCcEECCCCcEEECCCc
Confidence 123457999999999999999742 23445555557777643
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-26 Score=232.44 Aligned_cols=266 Identities=23% Similarity=0.310 Sum_probs=185.6
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
.+.++|+|||+||||+++|..|++ .|++|++||+.+.+||.+++++ |.+...+++.....+.+++.|++++.++.++
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~--~G~~v~vie~~~~~gG~~~~~i-~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 357 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLAT--MGYEVTVYESLSKPGGVMRYGI-PSYRLPDEALDKDIAFIEALGVKIHLNTRVG 357 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCceEeecC-CcccCCHHHHHHHHHHHHHCCcEEECCCEeC
Confidence 457899999999999999999999 8999999999999999999998 7666667777776777888999999998886
Q ss_pred EEeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHH
Q psy4525 91 QDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARI 170 (388)
Q Consensus 91 ~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~ 170 (388)
.+++.+.....||+||+|||+..++.+++||.+.++++++.+++...+...... ......+++|+|||||++|+|+|..
T Consensus 358 ~~~~~~~~~~~yD~vilAtGa~~~r~l~i~G~~~~gv~~a~~~l~~~~~~~~~~-~~~~~~~k~VvVIGGG~~g~e~A~~ 436 (604)
T PRK13984 358 KDIPLEELREKHDAVFLSTGFTLGRSTRIPGTDHPDVIQALPLLREIRDYLRGE-GPKPKIPRSLVVIGGGNVAMDIARS 436 (604)
T ss_pred CcCCHHHHHhcCCEEEEEcCcCCCccCCCCCcCCcCeEeHHHHHHHHHhhhccC-CCcCCCCCcEEEECCchHHHHHHHH
Confidence 655544444589999999999876788999998899998888775433211000 0111236899999999999999997
Q ss_pred hccCCcccccccCchhHHHhhhcCCCcEEEEEeec-CcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchh
Q psy4525 171 LLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRR-GALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPR 249 (388)
Q Consensus 171 L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~-~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 249 (388)
|++ ++. ...+..+|+++... .....+....+
T Consensus 437 l~r--------------~~~-~~~g~~~V~v~~~~r~~~~~~~~~~e--------------------------------- 468 (604)
T PRK13984 437 MAR--------------LQK-MEYGEVNVKVTSLERTFEEMPADMEE--------------------------------- 468 (604)
T ss_pred HHh--------------ccc-cccCceEEEEeccccCcccCCCCHHH---------------------------------
Confidence 751 000 01233568886432 11111111111
Q ss_pred hHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEcc--------Ccc---ccCCceeEEecceEEE
Q psy4525 250 KRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFAN--------QQA---LVTEDTELIPSGIAFR 318 (388)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~--------~~~---~~~~~~~~l~~D~Vi~ 318 (388)
+... .+.||+++++..++++.. +++++.++++.. ++. ..+++.+++++|.||+
T Consensus 469 --~~~~-------------~~~GV~i~~~~~~~~i~~-~~g~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~ 532 (604)
T PRK13984 469 --IEEG-------------LEEGVVIYPGWGPMEVVI-ENDKVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVE 532 (604)
T ss_pred --HHHH-------------HHcCCEEEeCCCCEEEEc-cCCEEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEE
Confidence 1111 147999999999999875 357888776642 110 1234567899999999
Q ss_pred ccccCCccCC------CCCcccCCCccccCCCC
Q psy4525 319 SIGYQSRCVD------SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 319 a~G~~p~~~~------~~l~~~~~~gi~l~~~~ 345 (388)
|+|++||+.. .++.+ .++++.+|+..
T Consensus 533 aiG~~p~~~~l~~~~~~~l~~-~~G~i~vd~~~ 564 (604)
T PRK13984 533 AIGQAPDYSYLPEELKSKLEF-VRGRILTNEYG 564 (604)
T ss_pred eeCCCCChhhhhhhhccCccc-cCCeEEeCCCC
Confidence 9999998632 12333 23446666543
|
|
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=2e-25 Score=221.44 Aligned_cols=260 Identities=14% Similarity=0.168 Sum_probs=168.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcc--------------------------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPE-------------------------- 64 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~-------------------------- 64 (388)
..+||+||||||||+++|..+++ .|.+|+|+|+.+.+||.| ++||.|....
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~--~G~~V~lie~~~~~GG~c~n~gciP~K~l~~~a~~~~~~~~~~~~g~~~~~~~~~ 80 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAAD--LGLETVCVERYSTLGGVCLNVGCIPSKALLHVAKVIEEAKALAEHGIVFGEPKID 80 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCcccccccCCCcccHHHHHHHHHHHHHHhhhhhcCcccCCCCcC
Confidence 45899999999999999999999 899999999987889876 6787776321
Q ss_pred hhHHHHH-----------HHHhhcCCCcEEEceEEEEE---E--eeeccc---ccccCEEEEeeCCCCCCCCCCCCCCCC
Q psy4525 65 VKNVINT-----------FTKTGDNPRVNFYGNICLGQ---D--ISLGDL---TNAYHAVVLTYGADNDKKLNIPGEDGK 125 (388)
Q Consensus 65 ~~~~~~~-----------~~~~~~~~~i~~~~~~~v~~---~--~~~~~~---~~~yd~lvlAtG~~~~~~~~i~g~~~~ 125 (388)
...+.++ +...+++.+++++.+...-. . ++..+. ...||+||||||+.+..+|.+++ +.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~gV~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~~~p~~~~-~~~ 159 (471)
T PRK06467 81 IDKMRARKEKVVKQLTGGLAGMAKGRKVTVVNGLGKFTGGNTLEVTGEDGKTTVIEFDNAIIAAGSRPIQLPFIPH-DDP 159 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCceEEEEcCEEEEeCCCCCCCCCCCCC-CCC
Confidence 1111111 22345667898887654311 1 222222 34899999999998842444554 334
Q ss_pred CeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeec
Q psy4525 126 NIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRR 205 (388)
Q Consensus 126 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~ 205 (388)
++++..+... ....+++++|||+|++|+|+|..|. ..+ .+||++.+.
T Consensus 160 ~v~~~~~~~~------------~~~~~~~vvIiGgG~iG~E~A~~l~--------------------~~G-~~Vtlv~~~ 206 (471)
T PRK06467 160 RIWDSTDALE------------LKEVPKRLLVMGGGIIGLEMGTVYH--------------------RLG-SEVDVVEMF 206 (471)
T ss_pred cEEChHHhhc------------cccCCCeEEEECCCHHHHHHHHHHH--------------------HcC-CCEEEEecC
Confidence 5655544331 1123589999999999999999775 233 579999998
Q ss_pred CcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeee
Q psy4525 206 GALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFK 285 (388)
Q Consensus 206 ~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~ 285 (388)
+.+...+. ++++ +.+.+.+ .++ +.++++..++++.
T Consensus 207 ~~il~~~d-~~~~-------------------------------~~~~~~l------------~~~-v~i~~~~~v~~i~ 241 (471)
T PRK06467 207 DQVIPAAD-KDIV-------------------------------KVFTKRI------------KKQ-FNIMLETKVTAVE 241 (471)
T ss_pred CCCCCcCC-HHHH-------------------------------HHHHHHH------------hhc-eEEEcCCEEEEEE
Confidence 77644322 2221 1111222 145 8999999999987
Q ss_pred eCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCCCCeecchhhHHhHH
Q psy4525 286 LNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEGVPVVTWEGWKAIDK 359 (388)
Q Consensus 286 ~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~ 359 (388)
.++ +. ..+.+.++ .++.+++++|.||+|+|++||+.. .++.+++++.+.+|++... -..+.|...|+
T Consensus 242 ~~~-~~-~~v~~~~~----~~~~~~i~~D~vi~a~G~~pn~~~l~~~~~gl~~~~~G~I~Vd~~~~t-~~p~VyAiGDv 313 (471)
T PRK06467 242 AKE-DG-IYVTMEGK----KAPAEPQRYDAVLVAVGRVPNGKLLDAEKAGVEVDERGFIRVDKQCRT-NVPHIFAIGDI 313 (471)
T ss_pred EcC-CE-EEEEEEeC----CCcceEEEeCEEEEeecccccCCccChhhcCceECCCCcEeeCCCccc-CCCCEEEehhh
Confidence 543 22 23433221 123467999999999999999842 3466666666777765432 22355555554
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-25 Score=222.28 Aligned_cols=241 Identities=17% Similarity=0.223 Sum_probs=162.3
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcc---------------------------
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPE--------------------------- 64 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~--------------------------- 64 (388)
.+||+||||||||++||..+++ .|.+|+|+|+. .+||.| +.||.|....
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~--~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAAN--HGAKVAIAEEP-RVGGTCVIRGCVPKKLMVYGSTFGGEFEDAAGYGWTVGKARFDW 78 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHh--CCCcEEEEecC-ccCceeecCCcCchHHHHHHHHHHHHHhhhHhcCcCCCCCCcCH
Confidence 4799999999999999999999 89999999985 789887 5688776410
Q ss_pred ----------hhHHHHHHHHhhcCCCcEEEceEEEEE---Eeee--cccccccCEEEEeeCCCCCCCCCCCCCCCCCeee
Q psy4525 65 ----------VKNVINTFTKTGDNPRVNFYGNICLGQ---DISL--GDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIIS 129 (388)
Q Consensus 65 ----------~~~~~~~~~~~~~~~~i~~~~~~~v~~---~~~~--~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~ 129 (388)
...+...+...+++.+++++.+..... .+.+ +.....||+||||||+.+ +.|++||.+. .++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~v~~~~v~v~~~g~~~~~d~lIiATGs~p-~~p~i~G~~~--~~~ 155 (446)
T TIGR01424 79 KKLLQKKDDEIARLSGLYKRLLANAGVELLEGRARLVGPNTVEVLQDGTTYTAKKILIAVGGRP-QKPNLPGHEL--GIT 155 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEecCCeEEEcCEEEEecCCcC-CCCCCCCccc--eec
Confidence 012333455566778898887654221 1222 222348999999999998 5778888642 222
Q ss_pred cccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCccc
Q psy4525 130 ARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQ 209 (388)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~ 209 (388)
..+.. .....+++++|||+|.+|+|+|..|. ..+ .+|+++.+.+.+.
T Consensus 156 ~~~~~------------~l~~~~~~vvVIGgG~~g~E~A~~l~--------------------~~G-~~Vtli~~~~~~l 202 (446)
T TIGR01424 156 SNEAF------------HLPTLPKSILILGGGYIAVEFAGIWR--------------------GLG-VQVTLIYRGELIL 202 (446)
T ss_pred hHHhh------------cccccCCeEEEECCcHHHHHHHHHHH--------------------HcC-CeEEEEEeCCCCC
Confidence 22221 11123689999999999999999775 223 5799999987653
Q ss_pred ccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCC
Q psy4525 210 VAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDN 289 (388)
Q Consensus 210 ~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~ 289 (388)
..+. ++++ +.+.+.+. +.||+++++..++++..+++
T Consensus 203 ~~~d-~~~~-------------------------------~~l~~~l~------------~~gV~i~~~~~v~~i~~~~~ 238 (446)
T TIGR01424 203 RGFD-DDMR-------------------------------ALLARNME------------GRGIRIHPQTSLTSITKTDD 238 (446)
T ss_pred cccC-HHHH-------------------------------HHHHHHHH------------HCCCEEEeCCEEEEEEEcCC
Confidence 3222 1111 11222222 57999999999999975433
Q ss_pred CceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCCC
Q psy4525 290 GAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEGV 346 (388)
Q Consensus 290 ~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~~ 346 (388)
+ ..+.+ .+++++++|.||+|+|++||+.. .++.+++++.+.+|+...
T Consensus 239 ~--~~v~~--------~~g~~i~~D~viva~G~~pn~~~l~l~~~g~~~~~~G~i~vd~~~~ 290 (446)
T TIGR01424 239 G--LKVTL--------SHGEEIVADVVLFATGRSPNTKGLGLEAAGVELNDAGAIAVDEYSR 290 (446)
T ss_pred e--EEEEE--------cCCcEeecCEEEEeeCCCcCCCcCCccccCeEECCCCcEEeCCCCc
Confidence 3 22322 24457999999999999999742 345566555577776653
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-25 Score=222.80 Aligned_cols=243 Identities=14% Similarity=0.196 Sum_probs=163.8
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcc-------------------------h--
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPE-------------------------V-- 65 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~-------------------------~-- 65 (388)
+||+||||||||++||..+++ .|.+|+|||+.+ +||.| ++||.|.+.. .
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~--~g~~v~lie~~~-~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 77 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAE--LGASVAMVERGP-LGGTCVNVGCVPSKMLLRAAEVAHYARKPPFGGLAATVAVDFGE 77 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCc-ccCCeeeecEEccHHHHHHHHHHHHhhccCcccccCCCccCHHH
Confidence 589999999999999999999 899999999975 77776 6787774210 0
Q ss_pred -----hHHHHH-----HHHhhcCCCcEEEceEEEEE---Eeeeccc--ccccCEEEEeeCCCCCCCCCCCCCCCCCeeec
Q psy4525 66 -----KNVINT-----FTKTGDNPRVNFYGNICLGQ---DISLGDL--TNAYHAVVLTYGADNDKKLNIPGEDGKNIISA 130 (388)
Q Consensus 66 -----~~~~~~-----~~~~~~~~~i~~~~~~~v~~---~~~~~~~--~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~ 130 (388)
+++... +...+++.+++++.+..... .+.+.+. ...||+||||||+.+ +.|++||.+..++++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~~~~~~v~v~~g~~~~~~~~lIiATGs~p-~~p~i~G~~~~~~~~~ 156 (463)
T TIGR02053 78 LLEGKREVVEELRHEKYEDVLSSYGVDYLRGRARFKDPKTVKVDLGREVRGAKRFLIATGARP-AIPPIPGLKEAGYLTS 156 (463)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHhCCcEEEEEEEEEccCCEEEEcCCeEEEEeCEEEEcCCCCC-CCCCCCCcccCceECc
Confidence 112111 23456677898887655321 2444332 247999999999988 5788999776566655
Q ss_pred ccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccc
Q psy4525 131 RSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQV 210 (388)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~ 210 (388)
.++.. ....+++++|||+|.+|+|+|..|. +.+ .+|+++.|.+.+..
T Consensus 157 ~~~~~------------~~~~~~~vvIIGgG~~g~E~A~~l~--------------------~~g-~~Vtli~~~~~~l~ 203 (463)
T TIGR02053 157 EEALA------------LDRIPESLAVIGGGAIGVELAQAFA--------------------RLG-SEVTILQRSDRLLP 203 (463)
T ss_pred hhhhC------------cccCCCeEEEECCCHHHHHHHHHHH--------------------HcC-CcEEEEEcCCcCCC
Confidence 44431 1123589999999999999999876 233 57999999876543
Q ss_pred cCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCC
Q psy4525 211 AFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNG 290 (388)
Q Consensus 211 ~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~ 290 (388)
.+. +++. ..+.+.+ ...||++++++.++++..+++
T Consensus 204 ~~d-~~~~-------------------------------~~l~~~l------------~~~gV~i~~~~~V~~i~~~~~- 238 (463)
T TIGR02053 204 REE-PEIS-------------------------------AAVEEAL------------AEEGIEVVTSAQVKAVSVRGG- 238 (463)
T ss_pred ccC-HHHH-------------------------------HHHHHHH------------HHcCCEEEcCcEEEEEEEcCC-
Confidence 321 2221 1111222 257999999999999986432
Q ss_pred ceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCC
Q psy4525 291 AITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKE 344 (388)
Q Consensus 291 ~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~ 344 (388)
...+.+.. .++++++++|.||+|+|++||... .++.+++++.+.+|+.
T Consensus 239 -~~~v~~~~-----~~~~~~i~~D~ViiA~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~ 291 (463)
T TIGR02053 239 -GKIITVEK-----PGGQGEVEADELLVATGRRPNTDGLGLEKAGVKLDERGGILVDET 291 (463)
T ss_pred -EEEEEEEe-----CCCceEEEeCEEEEeECCCcCCCCCCccccCCEECCCCcEeECCC
Confidence 22333321 234468999999999999999852 2344555555777754
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=222.20 Aligned_cols=242 Identities=18% Similarity=0.252 Sum_probs=162.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcc--------------------------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPE-------------------------- 64 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~-------------------------- 64 (388)
..+||+||||||||++||..+++ .|.+|+|||+. .+||.| +.||.|....
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~--~G~~V~liE~~-~~GG~c~n~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 79 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAM--YGAKVALIEAK-RLGGTCVNVGCVPKKLMWYGAQIAEAFHDYAPGYGFDVTENKF 79 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHH--CCCeEEEEecc-chhhhhhccCcchHHHHHHHHHHHHHHHhHHHhcCCCCCCCCc
Confidence 35899999999999999999999 89999999986 788876 6677665310
Q ss_pred -hh-----------HHHHHHHHhhcCCCcEEEceEEEEE---EeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeee
Q psy4525 65 -VK-----------NVINTFTKTGDNPRVNFYGNICLGQ---DISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIIS 129 (388)
Q Consensus 65 -~~-----------~~~~~~~~~~~~~~i~~~~~~~v~~---~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~ 129 (388)
.. .+...+.+.+.+.+++++.++.... .++++.....||+||+|||+.+ +.|++||.+ .+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~g~~~~v~~~~v~~~g~~~~~d~lViATGs~p-~~p~i~g~~--~~~~ 156 (450)
T PRK06116 80 DWAKLIANRDAYIDRLHGSYRNGLENNGVDLIEGFARFVDAHTVEVNGERYTADHILIATGGRP-SIPDIPGAE--YGIT 156 (450)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEECCEEEEeCEEEEecCCCC-CCCCCCCcc--eeEc
Confidence 01 1112233345567898887754321 2444333358999999999988 577888754 2443
Q ss_pred cccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCccc
Q psy4525 130 ARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQ 209 (388)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~ 209 (388)
..++.. ....+++++|||+|.+|+|+|..|. +.+ .+|+++.|.+.+.
T Consensus 157 ~~~~~~------------~~~~~~~vvViGgG~~g~E~A~~l~--------------------~~g-~~Vtlv~~~~~~l 203 (450)
T PRK06116 157 SDGFFA------------LEELPKRVAVVGAGYIAVEFAGVLN--------------------GLG-SETHLFVRGDAPL 203 (450)
T ss_pred hhHhhC------------ccccCCeEEEECCCHHHHHHHHHHH--------------------HcC-CeEEEEecCCCCc
Confidence 333321 1123689999999999999999775 233 5799999987643
Q ss_pred ccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCC
Q psy4525 210 VAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDN 289 (388)
Q Consensus 210 ~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~ 289 (388)
..+. +++. +.+.+.+. +.||++++++.++++..+++
T Consensus 204 ~~~~-~~~~-------------------------------~~l~~~L~------------~~GV~i~~~~~V~~i~~~~~ 239 (450)
T PRK06116 204 RGFD-PDIR-------------------------------ETLVEEME------------KKGIRLHTNAVPKAVEKNAD 239 (450)
T ss_pred cccC-HHHH-------------------------------HHHHHHHH------------HCCcEEECCCEEEEEEEcCC
Confidence 3222 1211 12222222 67999999999999986543
Q ss_pred CceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 290 GAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 290 ~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
+.+ .+.+ .++++++||.||+|+|++||... .++.+++++.+.+|+..
T Consensus 240 g~~-~v~~--------~~g~~i~~D~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~ 291 (450)
T PRK06116 240 GSL-TLTL--------EDGETLTVDCLIWAIGREPNTDGLGLENAGVKLNEKGYIIVDEYQ 291 (450)
T ss_pred ceE-EEEE--------cCCcEEEeCEEEEeeCCCcCCCCCCchhcCceECCCCcEecCCCC
Confidence 422 2332 23457999999999999999852 34556655447776543
|
|
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-25 Score=224.74 Aligned_cols=254 Identities=24% Similarity=0.375 Sum_probs=183.9
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
...++|+|||+||+||++|..|++ .|++|++||+.+.+||++++++ |.+...+++.....+.+.+.|++++.++.++
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~--~G~~V~v~e~~~~~GG~l~~gi-p~~~~~~~~~~~~l~~~~~~Gv~~~~~~~~~ 211 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRR--MGHAVTIFEAGPKLGGMMRYGI-PAYRLPREVLDAEIQRILDLGVEVRLGVRVG 211 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCCeeeecC-CCccCCHHHHHHHHHHHHHCCCEEEeCCEEC
Confidence 457899999999999999999999 8999999999999999999998 7777777777776777778899998887764
Q ss_pred EEeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHH
Q psy4525 91 QDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARI 170 (388)
Q Consensus 91 ~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~ 170 (388)
.++........||+||+|||+...+.+.++|.+..+++...++....... .....+++|+|||+|++|+|.+..
T Consensus 212 ~~~~~~~~~~~~D~Vi~AtG~~~~~~~~i~g~~~~gv~~~~~~l~~~~~~------~~~~~gk~v~ViGgg~~a~d~a~~ 285 (564)
T PRK12771 212 EDITLEQLEGEFDAVFVAIGAQLGKRLPIPGEDAAGVLDAVDFLRAVGEG------EPPFLGKRVVVIGGGNTAMDAART 285 (564)
T ss_pred CcCCHHHHHhhCCEEEEeeCCCCCCcCCCCCCccCCcEEHHHHHHHhhcc------CCcCCCCCEEEECChHHHHHHHHH
Confidence 44433333347999999999987567789998888888877776432211 122347899999999999999985
Q ss_pred hccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhh
Q psy4525 171 LLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRK 250 (388)
Q Consensus 171 L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 250 (388)
+. +.++++|++++|.+....+....++.+
T Consensus 286 a~--------------------~lga~~v~ii~r~~~~~~~~~~~~~~~------------------------------- 314 (564)
T PRK12771 286 AR--------------------RLGAEEVTIVYRRTREDMPAHDEEIEE------------------------------- 314 (564)
T ss_pred HH--------------------HcCCCEEEEEEecCcccCCCCHHHHHH-------------------------------
Confidence 54 345578999999865433322222211
Q ss_pred HHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEc---------cCcccc-CCceeEEecceEEEcc
Q psy4525 251 RLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFA---------NQQALV-TEDTELIPSGIAFRSI 320 (388)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~---------~~~~~~-~~~~~~l~~D~Vi~a~ 320 (388)
..+.||+++++..+.++..++++.+ ++++. +++... .++..++++|.||+|+
T Consensus 315 -----------------a~~~GVki~~~~~~~~i~~~~~~~~-~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~ 376 (564)
T PRK12771 315 -----------------ALREGVEINWLRTPVEIEGDENGAT-GLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAI 376 (564)
T ss_pred -----------------HHHcCCEEEecCCcEEEEcCCCCEE-EEEEEEEEecccCCCCCeeecCCceEEEECCEEEECc
Confidence 1157899999999999986544443 54331 121111 4556789999999999
Q ss_pred ccCCccCC----CCCcccCCCccccCC
Q psy4525 321 GYQSRCVD----SDIPFNEKSCTVIPK 343 (388)
Q Consensus 321 G~~p~~~~----~~l~~~~~~gi~l~~ 343 (388)
|+.|+... .++. +.++.+.+|.
T Consensus 377 G~~p~~~~~~~~~gl~-~~~G~i~vd~ 402 (564)
T PRK12771 377 GQDIDSAGLESVPGVE-VGRGVVQVDP 402 (564)
T ss_pred CCCCchhhhhhccCcc-cCCCCEEeCC
Confidence 99998531 2343 3444455654
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=220.94 Aligned_cols=244 Identities=15% Similarity=0.136 Sum_probs=165.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcc--------------------------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPE-------------------------- 64 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~-------------------------- 64 (388)
..+||+||||||||+++|..|.+ .|.+|++||+.+.+||.| ++|+.|....
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~--~G~~v~liE~~~~~GG~~~~~gcipsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAK--LGKRVAVIERYRNVGGGCTHTGTIPSKALREAVLRLIGFNQNPLYSSYRVKLRIT 81 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHh--CCCEEEEEeccccccccccccCCCCHHHHHHHHHHHHHHhhhhhhcccCCcCccC
Confidence 35899999999999999999999 899999999988899987 5577664311
Q ss_pred hhHH-----------HHHHHHhhcCCCcEEEceEEEEE-----Eeeeccc---ccccCEEEEeeCCCCCCCCCCCCCCCC
Q psy4525 65 VKNV-----------INTFTKTGDNPRVNFYGNICLGQ-----DISLGDL---TNAYHAVVLTYGADNDKKLNIPGEDGK 125 (388)
Q Consensus 65 ~~~~-----------~~~~~~~~~~~~i~~~~~~~v~~-----~~~~~~~---~~~yd~lvlAtG~~~~~~~~i~g~~~~ 125 (388)
..++ .+.+.+++.+.+++++.+..... .+...+. ...||+||||||+.+ +.|++++.+.+
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviATGs~p-~~p~~~~~~~~ 160 (461)
T PRK05249 82 FADLLARADHVINKQVEVRRGQYERNRVDLIQGRARFVDPHTVEVECPDGEVETLTADKIVIATGSRP-YRPPDVDFDHP 160 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCC-CCCCCCCCCCC
Confidence 1111 11233455667888887654211 1222222 348999999999988 46666666666
Q ss_pred CeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeec
Q psy4525 126 NIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRR 205 (388)
Q Consensus 126 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~ 205 (388)
+++++.++... ...+++++|||+|++|+|+|..|+ +. ..+|+++.|+
T Consensus 161 ~v~~~~~~~~~------------~~~~~~v~IiGgG~~g~E~A~~l~--------------------~~-g~~Vtli~~~ 207 (461)
T PRK05249 161 RIYDSDSILSL------------DHLPRSLIIYGAGVIGCEYASIFA--------------------AL-GVKVTLINTR 207 (461)
T ss_pred eEEcHHHhhch------------hhcCCeEEEECCCHHHHHHHHHHH--------------------Hc-CCeEEEEecC
Confidence 77766655421 123689999999999999999876 23 3579999998
Q ss_pred CcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeee
Q psy4525 206 GALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFK 285 (388)
Q Consensus 206 ~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~ 285 (388)
+.+...+. +++. ..+.+.+. +.|+++++++.++++.
T Consensus 208 ~~~l~~~d-~~~~-------------------------------~~l~~~l~------------~~gI~v~~~~~v~~i~ 243 (461)
T PRK05249 208 DRLLSFLD-DEIS-------------------------------DALSYHLR------------DSGVTIRHNEEVEKVE 243 (461)
T ss_pred CCcCCcCC-HHHH-------------------------------HHHHHHHH------------HcCCEEEECCEEEEEE
Confidence 76543222 2221 12222222 5799999999999997
Q ss_pred eCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 286 LNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 286 ~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
.++ +.+ .+++ .++++++||.||+|+|++||+.. .++.+++.+.+.+|+..
T Consensus 244 ~~~-~~~-~v~~--------~~g~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~ 298 (461)
T PRK05249 244 GGD-DGV-IVHL--------KSGKKIKADCLLYANGRTGNTDGLNLENAGLEADSRGQLKVNENY 298 (461)
T ss_pred EeC-CeE-EEEE--------CCCCEEEeCEEEEeecCCccccCCCchhhCcEecCCCcEeeCCCc
Confidence 643 222 2322 23457999999999999999742 34556655557776543
|
|
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1e-24 Score=202.07 Aligned_cols=242 Identities=21% Similarity=0.272 Sum_probs=167.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceee-----CCCCCC---cchhHHHHHHHHhhcCCCcEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY-----GVAPDH---PEVKNVINTFTKTGDNPRVNF 83 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~-----g~~p~~---~~~~~~~~~~~~~~~~~~i~~ 83 (388)
..+||+|||||||||+||.++.+ .+.++++++....+||.+.. +. |.+ ....++.+.+.+++..+++++
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r--~~l~~~li~~~~~~gg~~~~~~~veny-pg~~~~~~g~~L~~~~~~~a~~~~~~~ 78 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAAR--AGLKVVLILEGGEPGGQLTKTTDVENY-PGFPGGILGPELMEQMKEQAEKFGVEI 78 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHH--cCCCcEEEEecCCcCCccccceeecCC-CCCccCCchHHHHHHHHHHHhhcCeEE
Confidence 35799999999999999999999 89884444444466766521 11 333 357788999999999999887
Q ss_pred EceEEEEE-------EeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEE
Q psy4525 84 YGNICLGQ-------DISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEAT 156 (388)
Q Consensus 84 ~~~~~v~~-------~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vv 156 (388)
........ .+++++.....++||||||+.+ +.+.+||.. +|.+ .+.++|..+...+++++|+
T Consensus 79 ~~~~v~~v~~~~~~F~v~t~~~~~~ak~vIiAtG~~~-~~~~~~~e~--------e~~g--~gv~yc~~cdg~~~~k~v~ 147 (305)
T COG0492 79 VEDEVEKVELEGGPFKVKTDKGTYEAKAVIIATGAGA-RKLGVPGEE--------EFEG--KGVSYCATCDGFFKGKDVV 147 (305)
T ss_pred EEEEEEEEeecCceEEEEECCCeEEEeEEEECcCCcc-cCCCCCcch--------hhcC--CceEEeeecCccccCCeEE
Confidence 76333221 1333444456789999999988 688888654 2332 1233444333367789999
Q ss_pred EEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccc
Q psy4525 157 ILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLC 236 (388)
Q Consensus 157 VIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~ 236 (388)
|||||++|+|.|..|+ .-+++||+++|++.+... +.
T Consensus 148 ViGgG~sAve~Al~L~---------------------~~a~~Vtlv~r~~~~ra~---~~-------------------- 183 (305)
T COG0492 148 VIGGGDSAVEEALYLS---------------------KIAKKVTLVHRRDEFRAE---EI-------------------- 183 (305)
T ss_pred EEcCCHHHHHHHHHHH---------------------HhcCeEEEEecCcccCcC---HH--------------------
Confidence 9999999999999997 455789999999875431 11
Q ss_pred cchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceE
Q psy4525 237 GVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIA 316 (388)
Q Consensus 237 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~V 316 (388)
+.+.+. ...++.+++++.++++.++ + +.++++.+.+ +..+++++|.|
T Consensus 184 ---------------~~~~l~-----------~~~~i~~~~~~~i~ei~G~--~-v~~v~l~~~~----~~~~~~~~~gv 230 (305)
T COG0492 184 ---------------LVERLK-----------KNVKIEVLTNTVVKEILGD--D-VEGVVLKNVK----GEEKELPVDGV 230 (305)
T ss_pred ---------------HHHHHH-----------hcCCeEEEeCCceeEEecC--c-cceEEEEecC----CceEEEEeceE
Confidence 111111 1238999999999999964 3 7888886542 56679999999
Q ss_pred EEccccCCccCC-CCC-cccCCCccccCCC
Q psy4525 317 FRSIGYQSRCVD-SDI-PFNEKSCTVIPKE 344 (388)
Q Consensus 317 i~a~G~~p~~~~-~~l-~~~~~~gi~l~~~ 344 (388)
++++|..|++.. .++ .+++.+.+++++.
T Consensus 231 f~~iG~~p~~~~~~~~~~~~~~g~I~v~~~ 260 (305)
T COG0492 231 FIAIGHLPNTELLKGLGVLDENGYIVVDEE 260 (305)
T ss_pred EEecCCCCchHHHhhccccCCCCcEEcCCC
Confidence 999999999732 111 1344555555554
|
|
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-24 Score=202.95 Aligned_cols=254 Identities=21% Similarity=0.259 Sum_probs=168.0
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeC----CCCCC---cchhHHHHHHHHhhcCCCcEEEce
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYG----VAPDH---PEVKNVINTFTKTGDNPRVNFYGN 86 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g----~~p~~---~~~~~~~~~~~~~~~~~~i~~~~~ 86 (388)
++|+||||||||+++|..|++ .|.+|+|||+.+ +||.+... ..|.+ ....++..++.+++++++++++..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~~~ 77 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAAR--ANLKTLIIEGME-PGGQLTTTTEVENYPGFPEGISGPELMEKMKEQAVKFGAEIIYE 77 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHH--CCCCEEEEeccC-CCcceeecccccccCCCCCCCChHHHHHHHHHHHHHcCCeEEEE
Confidence 589999999999999999999 899999999886 66665321 01333 234678888888888889998874
Q ss_pred EEEEEE-------eeeccc-ccccCEEEEeeCCCCCCCCCCCCCCC---CCeeecccccccccCCCCccccCcCCCCCeE
Q psy4525 87 ICLGQD-------ISLGDL-TNAYHAVVLTYGADNDKKLNIPGEDG---KNIISARSFVGWYNGLPEDASLDLSLDCEEA 155 (388)
Q Consensus 87 ~~v~~~-------~~~~~~-~~~yd~lvlAtG~~~~~~~~i~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v 155 (388)
..+..+ +...+. ...||+||+|||+.+ +.+++||.+. .+++.... +. .....+++|
T Consensus 78 ~v~~v~~~~~~~~v~~~~~~~~~~d~liiAtG~~~-~~~~i~g~~~~~~~~~~~~~~----------~~--~~~~~~~~v 144 (300)
T TIGR01292 78 EVIKVDLSDRPFKVKTGDGKEYTAKAVIIATGASA-RKLGIPGEDEFLGRGVSYCAT----------CD--GPFFKNKEV 144 (300)
T ss_pred EEEEEEecCCeeEEEeCCCCEEEeCEEEECCCCCc-ccCCCCChhhcCCccEEEeee----------cC--hhhcCCCEE
Confidence 333221 222222 347999999999987 4778887541 12221111 00 122357899
Q ss_pred EEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEeccccc
Q psy4525 156 TILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQL 235 (388)
Q Consensus 156 vVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~ 235 (388)
+|||+|++|+|+|..|+ ...++|+++.|++.+...
T Consensus 145 ~ViG~G~~~~e~a~~l~---------------------~~~~~V~~v~~~~~~~~~------------------------ 179 (300)
T TIGR01292 145 AVVGGGDSAIEEALYLT---------------------RIAKKVTLVHRRDKFRAE------------------------ 179 (300)
T ss_pred EEECCChHHHHHHHHHH---------------------hhcCEEEEEEeCcccCcC------------------------
Confidence 99999999999999876 224689999998643210
Q ss_pred ccchhhhccccchhhHHHHHHHhhCCCCCCCCCCce-eEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecc
Q psy4525 236 CGVHEASATLARPRKRLTELILKTSNPDESKSNCSK-YFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSG 314 (388)
Q Consensus 236 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D 314 (388)
+.+.+.+. +. ||++++++.++++..+ +.+..+++.+. .+++++++++|
T Consensus 180 --------------~~~~~~l~------------~~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~---~~g~~~~i~~D 228 (300)
T TIGR01292 180 --------------KILLDRLR------------KNPNIEFLWNSTVKEIVGD--NKVEGVKIKNT---VTGEEEELKVD 228 (300)
T ss_pred --------------HHHHHHHH------------hCCCeEEEeccEEEEEEcc--CcEEEEEEEec---CCCceEEEEcc
Confidence 11111221 34 9999999999999853 35656655321 13566789999
Q ss_pred eEEEccccCCccCC--CCCcccCCCccccCCCCCCeecchhhHHhHHH
Q psy4525 315 IAFRSIGYQSRCVD--SDIPFNEKSCTVIPKEGVPVVTWEGWKAIDKE 360 (388)
Q Consensus 315 ~Vi~a~G~~p~~~~--~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~~ 360 (388)
.||+|+|++|+... ..+.+++++.+.+|+... .-..+.|...|+.
T Consensus 229 ~vi~a~G~~~~~~~l~~~~~~~~~g~i~v~~~~~-t~~~~vya~GD~~ 275 (300)
T TIGR01292 229 GVFIAIGHEPNTELLKGLLELDEGGYIVTDEGMR-TSVPGVFAAGDVR 275 (300)
T ss_pred EEEEeeCCCCChHHHHHhheecCCCcEEECCCCc-cCCCCEEEeeccc
Confidence 99999999998731 114455555666766532 2233555555544
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-25 Score=217.76 Aligned_cols=255 Identities=16% Similarity=0.183 Sum_probs=167.3
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC-CCCce-eeCCCCCCcchh----------------HHHHHH--
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV-PFGLV-RYGVAPDHPEVK----------------NVINTF-- 72 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~-~gg~~-~~g~~p~~~~~~----------------~~~~~~-- 72 (388)
.+||+||||||||++||..|++ .|.+|+|||+.+. +||.| +.||.|...... .+...+
T Consensus 3 ~yDvvVIGgGpaGl~aA~~la~--~g~~V~lie~~~~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (441)
T PRK08010 3 KYQAVIIGFGKAGKTLAVTLAK--AGWRVALIEQSNAMYGGTCINIGCIPTKTLVHDAQQHTDFVRAIQRKNEVVNFLRN 80 (441)
T ss_pred cCCEEEECCCHhHHHHHHHHHH--CCCeEEEEcCCCCccceeEeeccccchHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999999 8999999999764 78887 567777643111 111111
Q ss_pred ---HHhhcCCCcEEEceEEEEE-----Eeeeccc--ccccCEEEEeeCCCCCCCCCCCCCC-CCCeeecccccccccCCC
Q psy4525 73 ---TKTGDNPRVNFYGNICLGQ-----DISLGDL--TNAYHAVVLTYGADNDKKLNIPGED-GKNIISARSFVGWYNGLP 141 (388)
Q Consensus 73 ---~~~~~~~~i~~~~~~~v~~-----~~~~~~~--~~~yd~lvlAtG~~~~~~~~i~g~~-~~~v~~~~~~~~~~~~~~ 141 (388)
.+..+..+++++.+..... .+...+. ...||+||+|||+.+ +.|++||.+ .++++++.++..
T Consensus 81 ~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~d~lviATGs~p-~~p~i~G~~~~~~v~~~~~~~~------ 153 (441)
T PRK08010 81 KNFHNLADMPNIDVIDGQAEFINNHSLRVHRPEGNLEIHGEKIFINTGAQT-VVPPIPGITTTPGVYDSTGLLN------ 153 (441)
T ss_pred hHHHHHhhcCCcEEEEEEEEEecCCEEEEEeCCCeEEEEeCEEEEcCCCcC-CCCCCCCccCCCCEEChhHhhc------
Confidence 1222334888876643211 1222232 348999999999998 578899964 466776554431
Q ss_pred CccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHh
Q psy4525 142 EDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMT 221 (388)
Q Consensus 142 ~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~ 221 (388)
....+++++|||+|.+|+|+|..|. ....+|+++.|.+.+...+ ++++.
T Consensus 154 ------~~~~~~~v~ViGgG~~g~E~A~~l~---------------------~~g~~Vtli~~~~~~l~~~-~~~~~--- 202 (441)
T PRK08010 154 ------LKELPGHLGILGGGYIGVEFASMFA---------------------NFGSKVTILEAASLFLPRE-DRDIA--- 202 (441)
T ss_pred ------ccccCCeEEEECCCHHHHHHHHHHH---------------------HCCCeEEEEecCCCCCCCc-CHHHH---
Confidence 1123679999999999999999876 2235799999987654322 12221
Q ss_pred cCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCc
Q psy4525 222 KLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQ 301 (388)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~ 301 (388)
..+.+.+ .+.||++++++.++++..++ +.+ .+.
T Consensus 203 ----------------------------~~l~~~l------------~~~gV~v~~~~~v~~i~~~~-~~v-~v~----- 235 (441)
T PRK08010 203 ----------------------------DNIATIL------------RDQGVDIILNAHVERISHHE-NQV-QVH----- 235 (441)
T ss_pred ----------------------------HHHHHHH------------HhCCCEEEeCCEEEEEEEcC-CEE-EEE-----
Confidence 1122222 26799999999999998643 322 222
Q ss_pred cccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCCCCeecchhhHHhHH
Q psy4525 302 ALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEGVPVVTWEGWKAIDK 359 (388)
Q Consensus 302 ~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~ 359 (388)
++++ ++++|.|++|+|++||+.. .++.+++++++.+|++.... ..+.|...|+
T Consensus 236 ---~~~g-~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~~Ts-~~~IyA~GD~ 293 (441)
T PRK08010 236 ---SEHA-QLAVDALLIASGRQPATASLHPENAGIAVNERGAIVVDKYLHTT-ADNIWAMGDV 293 (441)
T ss_pred ---EcCC-eEEeCEEEEeecCCcCCCCcCchhcCcEECCCCcEEECCCcccC-CCCEEEeeec
Confidence 1222 5899999999999999842 34666665667787654321 2244444443
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.7e-25 Score=219.11 Aligned_cols=243 Identities=17% Similarity=0.213 Sum_probs=160.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcC---------CCCCCCce-eeCCCCCCcc-----------------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEK---------LPVPFGLV-RYGVAPDHPE----------------- 64 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~---------~~~~gg~~-~~g~~p~~~~----------------- 64 (388)
..+||+||||||+|+++|..+.+ .|.+|+|||+ ...+||.| +.||.|....
T Consensus 24 ~~yDvvVIG~GpaG~~aA~~a~~--~G~~V~liE~~~~~~~~~~~~~~GGtc~n~GciPsK~l~~~a~~~~~~~~~~~~G 101 (499)
T PLN02507 24 YDFDLFVIGAGSGGVRAARFSAN--FGAKVGICELPFHPISSESIGGVGGTCVIRGCVPKKILVYGATFGGEFEDAKNYG 101 (499)
T ss_pred cccCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCcccccccCCCccceeeccCchhHHHHHHHHHHHHHHHHHHhcC
Confidence 35899999999999999999999 8999999996 35689987 6688764321
Q ss_pred ----------hhHHH-----------HHHHHhhcCCCcEEEceEEEE-----EEeeecccc---cccCEEEEeeCCCCCC
Q psy4525 65 ----------VKNVI-----------NTFTKTGDNPRVNFYGNICLG-----QDISLGDLT---NAYHAVVLTYGADNDK 115 (388)
Q Consensus 65 ----------~~~~~-----------~~~~~~~~~~~i~~~~~~~v~-----~~~~~~~~~---~~yd~lvlAtG~~~~~ 115 (388)
..++. ..+...+...+++++.+.... ..++..+.+ ..||+||||||+.+ +
T Consensus 102 ~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~i~g~a~~vd~~~v~V~~~~g~~~~~~~d~LIIATGs~p-~ 180 (499)
T PLN02507 102 WEINEKVDFNWKKLLQKKTDEILRLNGIYKRLLANAGVKLYEGEGKIVGPNEVEVTQLDGTKLRYTAKHILIATGSRA-Q 180 (499)
T ss_pred cccCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEecCCEEEEEeCCCcEEEEEcCEEEEecCCCC-C
Confidence 01111 112234455788887664321 123333332 37899999999988 4
Q ss_pred CCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCC
Q psy4525 116 KLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSR 195 (388)
Q Consensus 116 ~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~ 195 (388)
.|++||.+. .++..+.. .....+++++|||+|.+|+|+|..|. ..
T Consensus 181 ~p~ipG~~~--~~~~~~~~------------~l~~~~k~vvVIGgG~ig~E~A~~l~---------------------~~ 225 (499)
T PLN02507 181 RPNIPGKEL--AITSDEAL------------SLEELPKRAVVLGGGYIAVEFASIWR---------------------GM 225 (499)
T ss_pred CCCCCCccc--eechHHhh------------hhhhcCCeEEEECCcHHHHHHHHHHH---------------------Hc
Confidence 778888542 22222221 11123689999999999999999775 22
Q ss_pred CcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEE
Q psy4525 196 IKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRP 275 (388)
Q Consensus 196 ~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 275 (388)
..+|+++.|.+.+...+. ++++ +.+.+.+. +.||++
T Consensus 226 G~~Vtli~~~~~~l~~~d-~~~~-------------------------------~~l~~~l~------------~~GI~i 261 (499)
T PLN02507 226 GATVDLFFRKELPLRGFD-DEMR-------------------------------AVVARNLE------------GRGINL 261 (499)
T ss_pred CCeEEEEEecCCcCcccC-HHHH-------------------------------HHHHHHHH------------hCCCEE
Confidence 357999999876433222 2221 12222222 579999
Q ss_pred EecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCCC
Q psy4525 276 IFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEGV 346 (388)
Q Consensus 276 ~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~~ 346 (388)
++++.++++..++ +.+ .+. +++++++++|.|++|+|++||+.. .++.+++++.+.+|++..
T Consensus 262 ~~~~~V~~i~~~~-~~~-~v~--------~~~g~~i~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~I~Vd~~~~ 327 (499)
T PLN02507 262 HPRTNLTQLTKTE-GGI-KVI--------TDHGEEFVADVVLFATGRAPNTKRLNLEAVGVELDKAGAVKVDEYSR 327 (499)
T ss_pred EeCCEEEEEEEeC-CeE-EEE--------ECCCcEEEcCEEEEeecCCCCCCCCCchhhCcEECCCCcEecCCCCc
Confidence 9999999997543 222 232 234567999999999999999852 345566655688876653
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.5e-25 Score=221.12 Aligned_cols=255 Identities=15% Similarity=0.187 Sum_probs=168.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcC---------CCCCCCce-eeCCCCCCcc------------------
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEK---------LPVPFGLV-RYGVAPDHPE------------------ 64 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~---------~~~~gg~~-~~g~~p~~~~------------------ 64 (388)
.+||+|||+||+|+.||..+++ .|.+|+|+|+ ...+||.| ++||.|.+..
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~--~G~~V~liE~~~~~~~~~~~~~~GGtC~n~GCiPsK~l~~aa~~~~~~~~~~~~g~ 156 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASN--FGASAAVCELPFATISSDTLGGVGGTCVLRGCVPKKLLVYASKYSHEFEESRGFGW 156 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccccccccccCCCccCcccCcchHHHHHHHHHHHHHHHHHhhhhcCc
Confidence 4899999999999999999999 8999999996 23578877 7788764310
Q ss_pred --------------------hhHHHHHHHHhhcCCCcEEEceEEEEE---EeeecccccccCEEEEeeCCCCCCCCCCCC
Q psy4525 65 --------------------VKNVINTFTKTGDNPRVNFYGNICLGQ---DISLGDLTNAYHAVVLTYGADNDKKLNIPG 121 (388)
Q Consensus 65 --------------------~~~~~~~~~~~~~~~~i~~~~~~~v~~---~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g 121 (388)
..++..++.+.+++.+++++.+..... .+.++.....||+||||||+.+ ..|++||
T Consensus 157 ~~~~~~~~d~~~~~~~k~~~~~~l~~~~~~~l~~~gV~~i~G~a~~vd~~~V~v~G~~~~~D~LVIATGs~p-~~P~IpG 235 (558)
T PLN02546 157 KYETEPKHDWNTLIANKNAELQRLTGIYKNILKNAGVTLIEGRGKIVDPHTVDVDGKLYTARNILIAVGGRP-FIPDIPG 235 (558)
T ss_pred ccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEccCCEEEECCEEEECCEEEEeCCCCC-CCCCCCC
Confidence 112233445566778899886643221 2333333458999999999998 4778888
Q ss_pred CCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEE
Q psy4525 122 EDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNL 201 (388)
Q Consensus 122 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 201 (388)
.+ .++++.++. .....+++|+|||+|++|+|+|..|+ ....+|++
T Consensus 236 ~~--~v~~~~~~l------------~~~~~~k~V~VIGgG~iGvE~A~~L~---------------------~~g~~Vtl 280 (558)
T PLN02546 236 IE--HAIDSDAAL------------DLPSKPEKIAIVGGGYIALEFAGIFN---------------------GLKSDVHV 280 (558)
T ss_pred hh--hccCHHHHH------------hccccCCeEEEECCCHHHHHHHHHHH---------------------hcCCeEEE
Confidence 54 344333322 11124689999999999999999876 22358999
Q ss_pred EeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcc
Q psy4525 202 VGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSP 281 (388)
Q Consensus 202 i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~ 281 (388)
+.|.+.+...+. ++++ +.+.+.+. +.||+++++..+
T Consensus 281 v~~~~~il~~~d-~~~~-------------------------------~~l~~~L~------------~~GV~i~~~~~v 316 (558)
T PLN02546 281 FIRQKKVLRGFD-EEVR-------------------------------DFVAEQMS------------LRGIEFHTEESP 316 (558)
T ss_pred EEeccccccccC-HHHH-------------------------------HHHHHHHH------------HCCcEEEeCCEE
Confidence 998876543221 2221 12222222 679999999999
Q ss_pred eeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCCCCeecchhhHH
Q psy4525 282 TEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEGVPVVTWEGWKA 356 (388)
Q Consensus 282 ~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~~~~~~~~~w~~ 356 (388)
.++..+.++.+ .++ +++++...+|.||+|+|++||+.. .++.++.++++.+|+..... ..+.|..
T Consensus 317 ~~i~~~~~g~v-~v~--------~~~g~~~~~D~Viva~G~~Pnt~~L~le~~gl~~d~~G~I~VD~~l~Ts-~p~IYAa 386 (558)
T PLN02546 317 QAIIKSADGSL-SLK--------TNKGTVEGFSHVMFATGRKPNTKNLGLEEVGVKMDKNGAIEVDEYSRTS-VPSIWAV 386 (558)
T ss_pred EEEEEcCCCEE-EEE--------ECCeEEEecCEEEEeeccccCCCcCChhhcCCcCCCCCcEeECCCceeC-CCCEEEe
Confidence 99975433433 232 233445569999999999999842 35566655568887654321 2244444
Q ss_pred hHH
Q psy4525 357 IDK 359 (388)
Q Consensus 357 ~~~ 359 (388)
.|+
T Consensus 387 GDv 389 (558)
T PLN02546 387 GDV 389 (558)
T ss_pred ecc
Confidence 443
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.2e-25 Score=218.76 Aligned_cols=257 Identities=13% Similarity=0.171 Sum_probs=171.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcc-------------------------h
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPE-------------------------V 65 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~-------------------------~ 65 (388)
..+||+||||||||++||..+++ .|.+|+|||++ .+||.| ++||.|.... .
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~--~G~~ValIEk~-~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~Gi~~~~~~d~ 123 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAAR--NKAKVALVEKD-YLGGTCVNVGCVPKKIMFNAASIHDILENSRHYGFDTQFSFNL 123 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHH--cCCeEEEEecc-cccccccccCCCCCchhhhhcccHHHHHHHHhcCCCccCccCH
Confidence 46899999999999999999999 89999999987 688877 7788775420 0
Q ss_pred hH-----------HHHHHHHhhcCCCcEEEceEEE-EE--Eee--------------------e--------ccc-cccc
Q psy4525 66 KN-----------VINTFTKTGDNPRVNFYGNICL-GQ--DIS--------------------L--------GDL-TNAY 102 (388)
Q Consensus 66 ~~-----------~~~~~~~~~~~~~i~~~~~~~v-~~--~~~--------------------~--------~~~-~~~y 102 (388)
.. +.+.+.+.+++.|++++.+... .. .+. + ++. ...|
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~gv~~~~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~i~a 203 (561)
T PTZ00058 124 PLLVERRDKYIRRLNDIYRQNLKKDNVEYFEGKGSLLSENQVLIKKVSQVDGEADESDDDEVTIVSAGVSQLDDGQVIEG 203 (561)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEecCCEEEeeccccccccccccccccceeeeccceecCCCcEEEC
Confidence 01 1122334456678888766531 11 111 1 122 3489
Q ss_pred CEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCccccccc
Q psy4525 103 HAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTD 182 (388)
Q Consensus 103 d~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~ 182 (388)
|+||||||+.| +.|++||.+ .+++..++.. . ..+++|+|||+|.+|+|+|..|.
T Consensus 204 d~lVIATGS~P-~~P~IpG~~--~v~ts~~~~~------------l-~~pk~VvIIGgG~iGlE~A~~l~---------- 257 (561)
T PTZ00058 204 KNILIAVGNKP-IFPDVKGKE--FTISSDDFFK------------I-KEAKRIGIAGSGYIAVELINVVN---------- 257 (561)
T ss_pred CEEEEecCCCC-CCCCCCCce--eEEEHHHHhh------------c-cCCCEEEEECCcHHHHHHHHHHH----------
Confidence 99999999988 578888864 3554444331 1 12689999999999999999776
Q ss_pred CchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCC
Q psy4525 183 ITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNP 262 (388)
Q Consensus 183 ~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 262 (388)
..+ .+||++.|.+.+...+. +++. +.+.+.+
T Consensus 258 ----------~~G-~~Vtli~~~~~il~~~d-~~i~-------------------------------~~l~~~L------ 288 (561)
T PTZ00058 258 ----------RLG-AESYIFARGNRLLRKFD-ETII-------------------------------NELENDM------ 288 (561)
T ss_pred ----------HcC-CcEEEEEecccccccCC-HHHH-------------------------------HHHHHHH------
Confidence 233 57999999876543322 2221 1122222
Q ss_pred CCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCCCCC---c-ccCCCc
Q psy4525 263 DESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVDSDI---P-FNEKSC 338 (388)
Q Consensus 263 ~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~~~l---~-~~~~~g 338 (388)
.+.||+++++..+.++..++++.+. +.+ .++++++++|.|++|+|++||+...++ . ...+++
T Consensus 289 ------~~~GV~i~~~~~V~~I~~~~~~~v~-v~~-------~~~~~~i~aD~VlvA~Gr~Pn~~~L~l~~~~~~~~~G~ 354 (561)
T PTZ00058 289 ------KKNNINIITHANVEEIEKVKEKNLT-IYL-------SDGRKYEHFDYVIYCVGRSPNTEDLNLKALNIKTPKGY 354 (561)
T ss_pred ------HHCCCEEEeCCEEEEEEecCCCcEE-EEE-------CCCCEEEECCEEEECcCCCCCccccCccccceecCCCe
Confidence 2579999999999999864322232 222 233467999999999999999853222 1 233445
Q ss_pred cccCCCCCCeecchhhHHhHHHH
Q psy4525 339 TVIPKEGVPVVTWEGWKAIDKEE 361 (388)
Q Consensus 339 i~l~~~~~~~~~~~~w~~~~~~~ 361 (388)
+.+|+.... -..+.|...|+..
T Consensus 355 I~VDe~lqT-s~p~IYA~GDv~~ 376 (561)
T PTZ00058 355 IKVDDNQRT-SVKHIYAVGDCCM 376 (561)
T ss_pred EEECcCCcc-CCCCEEEeEeccC
Confidence 778876543 3347888888876
|
|
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-24 Score=203.45 Aligned_cols=262 Identities=16% Similarity=0.206 Sum_probs=168.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceee-----CCCCC---CcchhHHHHHHHHhhcCCCcE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY-----GVAPD---HPEVKNVINTFTKTGDNPRVN 82 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~-----g~~p~---~~~~~~~~~~~~~~~~~~~i~ 82 (388)
...++|+|||||||||+||..+.+ .|.++++||+. ..||.+.. .. |. ......+.+++.++...++.+
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~--~g~~~~~ie~~-~~gg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAAR--ANLQPVLITGM-EKGGQLTTTTEVENW-PGDPNDLTGPLLMERMHEHATKFETE 79 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHH--CCCCeEEEEee-cCCCceecCceECCC-CCCCCCCCHHHHHHHHHHHHHHCCCE
Confidence 356899999999999999999999 89999999954 56776522 22 32 223455677777777777776
Q ss_pred EEceEEEEEE-------eeecccccccCEEEEeeCCCCCCCCCCCCCC---CCCeeecccccccccCCCCccccCcCCCC
Q psy4525 83 FYGNICLGQD-------ISLGDLTNAYHAVVLTYGADNDKKLNIPGED---GKNIISARSFVGWYNGLPEDASLDLSLDC 152 (388)
Q Consensus 83 ~~~~~~v~~~-------~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (388)
++.+.....+ ++.+.....||+||+|||+.+ +.|++||.+ ..++...... . .....+
T Consensus 80 ~~~~~v~~v~~~~~~~~v~~~~~~~~~d~vilAtG~~~-~~~~i~g~~~~~~~~v~~~~~~----------~--~~~~~g 146 (321)
T PRK10262 80 IIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASA-RYLGLPSEEAFKGRGVSACATC----------D--GFFYRN 146 (321)
T ss_pred EEeeEEEEEEecCCeEEEEecCCEEEECEEEECCCCCC-CCCCCCCHHHcCCCcEEEeecC----------C--HHHcCC
Confidence 6654322211 222222347999999999998 578888854 1222211110 0 122457
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecc
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRN 232 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~ 232 (388)
++++|||+|++|+|+|..|+ ...++|+++.|++.+.. . +.+.
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~---------------------~~~~~Vtlv~~~~~~~~--~-~~~~-------------- 188 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLS---------------------NIASEVHLIHRRDGFRA--E-KILI-------------- 188 (321)
T ss_pred CEEEEECCCHHHHHHHHHHH---------------------hhCCEEEEEEECCccCC--C-HHHH--------------
Confidence 99999999999999999886 22468999999865311 1 1111
Q ss_pred cccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEe
Q psy4525 233 EQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIP 312 (388)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~ 312 (388)
+.+.+. +.+.+|+++++..++++..++ +.+..+++.++. ..++.++++
T Consensus 189 -----------------~~~~~~------------l~~~gV~i~~~~~v~~v~~~~-~~~~~v~~~~~~--~~~~~~~i~ 236 (321)
T PRK10262 189 -----------------KRLMDK------------VENGNIILHTNRTLEEVTGDQ-MGVTGVRLRDTQ--NSDNIESLD 236 (321)
T ss_pred -----------------HHHHhh------------ccCCCeEEEeCCEEEEEEcCC-ccEEEEEEEEcC--CCCeEEEEE
Confidence 111111 236799999999999998542 456667665321 123446899
Q ss_pred cceEEEccccCCccCC--CCCcccCCCccccCCC----CCCeecchhhHHhHHH
Q psy4525 313 SGIAFRSIGYQSRCVD--SDIPFNEKSCTVIPKE----GVPVVTWEGWKAIDKE 360 (388)
Q Consensus 313 ~D~Vi~a~G~~p~~~~--~~l~~~~~~gi~l~~~----~~~~~~~~~w~~~~~~ 360 (388)
+|.||+++|++||... .++.++ ++++.+|.. ....-..+.|...|+.
T Consensus 237 ~D~vv~a~G~~p~~~l~~~~l~~~-~g~i~vd~~~~~~~~~t~~~~VyA~GD~~ 289 (321)
T PRK10262 237 VAGLFVAIGHSPNTAIFEGQLELE-NGYIKVQSGIHGNATQTSIPGVFAAGDVM 289 (321)
T ss_pred CCEEEEEeCCccChhHhhcccccc-CCEEEECCCCcccccccCCCCEEECeecc
Confidence 9999999999999852 235443 345666651 1112233566666664
|
|
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.3e-25 Score=230.51 Aligned_cols=267 Identities=12% Similarity=0.070 Sum_probs=175.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhC--CCCcEEEEcCCCCCC-Cce-eeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLL--PQSTVDIYEKLPVPF-GLV-RYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNIC 88 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~--~g~~v~lie~~~~~g-g~~-~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 88 (388)
+++|||||+|+||+.+|..|+++. .+++|+||++++.++ ..+ ....... ...+++.....+++++.+++++.++.
T Consensus 3 ~~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~Y~r~~L~~~~~~-~~~~~l~~~~~~~~~~~gI~~~~g~~ 81 (847)
T PRK14989 3 KVRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIAYDRVHLSSYFSH-HTAEELSLVREGFYEKHGIKVLVGER 81 (847)
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCcccCCcchHhHcC-CCHHHccCCCHHHHHhCCCEEEcCCE
Confidence 358999999999999999998752 468999999997753 211 0000011 12333433345566778999998765
Q ss_pred EE-EE-----eeecccc-cccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCC
Q psy4525 89 LG-QD-----ISLGDLT-NAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQG 161 (388)
Q Consensus 89 v~-~~-----~~~~~~~-~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG 161 (388)
+. .+ +.+.+.. ..||+||||||+.+ +.|++||.+.++++..+.+..... + . .....+++++|||||
T Consensus 82 V~~Id~~~~~V~~~~G~~i~yD~LVIATGs~p-~~p~ipG~~~~~v~~~rt~~d~~~-l---~--~~~~~~k~vvVIGgG 154 (847)
T PRK14989 82 AITINRQEKVIHSSAGRTVFYDKLIMATGSYP-WIPPIKGSETQDCFVYRTIEDLNA-I---E--ACARRSKRGAVVGGG 154 (847)
T ss_pred EEEEeCCCcEEEECCCcEEECCEEEECCCCCc-CCCCCCCCCCCCeEEECCHHHHHH-H---H--HHHhcCCeEEEECCC
Confidence 42 22 3333333 48999999999998 578899988888776544432110 0 0 111246899999999
Q ss_pred hHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhh
Q psy4525 162 NVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEA 241 (388)
Q Consensus 162 ~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~ 241 (388)
++|+|+|..|. +.+ .+|+++.+.+.+.....+++..
T Consensus 155 ~iGlE~A~~L~--------------------~~G-~~VtvVe~~~~ll~~~ld~~~~----------------------- 190 (847)
T PRK14989 155 LLGLEAAGALK--------------------NLG-VETHVIEFAPMLMAEQLDQMGG----------------------- 190 (847)
T ss_pred HHHHHHHHHHH--------------------HcC-CeEEEEeccccchhhhcCHHHH-----------------------
Confidence 99999999876 234 4699999887654322222221
Q ss_pred hccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccc
Q psy4525 242 SATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIG 321 (388)
Q Consensus 242 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G 321 (388)
+.+.+.+ .+.||+++++..++++..++.+.+..+.+ .+++++++|+||+|+|
T Consensus 191 --------~~l~~~L------------~~~GV~v~~~~~v~~I~~~~~~~~~~v~~--------~dG~~i~~D~Vv~A~G 242 (847)
T PRK14989 191 --------EQLRRKI------------ESMGVRVHTSKNTLEIVQEGVEARKTMRF--------ADGSELEVDFIVFSTG 242 (847)
T ss_pred --------HHHHHHH------------HHCCCEEEcCCeEEEEEecCCCceEEEEE--------CCCCEEEcCEEEECCC
Confidence 1222222 26899999999999997543344445544 4456899999999999
Q ss_pred cCCccC---CCCCcccCCCccccCCCCCCeecchhhHHhHHH
Q psy4525 322 YQSRCV---DSDIPFNEKSCTVIPKEGVPVVTWEGWKAIDKE 360 (388)
Q Consensus 322 ~~p~~~---~~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~~ 360 (388)
++||+. ..++.++++++|.+|++.... ..+.|...|++
T Consensus 243 ~rPn~~L~~~~Gl~~~~~G~I~VD~~l~Ts-~p~IYAiGD~a 283 (847)
T PRK14989 243 IRPQDKLATQCGLAVAPRGGIVINDSCQTS-DPDIYAIGECA 283 (847)
T ss_pred cccCchHHhhcCccCCCCCcEEECCCCcCC-CCCEEEeecce
Confidence 999984 256777777789998765432 23444444444
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-24 Score=214.77 Aligned_cols=243 Identities=14% Similarity=0.198 Sum_probs=158.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCc--------------------------c
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHP--------------------------E 64 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~--------------------------~ 64 (388)
..+||+||||||||++||..+++ .|.+|+|+|+.. +||.| +.||.|.+. .
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~--~G~~V~liE~~~-~GG~c~~~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQ--LGLKVAIVEKEK-LGGTCLNRGCIPSKALLHAAERADEARHSEDFGIKAENVGID 79 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHH--CCCcEEEEeccc-cccceeecccCCcHHHHHhhhHHHHHHHHHhcCcccCCCccC
Confidence 35899999999999999999999 899999999986 88876 667776532 1
Q ss_pred hhHHHHH-----------HHHhhcCCCcEEEceEEEEE---Eeeec----ccccccCEEEEeeCCCCCCCCCCCCCCCC-
Q psy4525 65 VKNVINT-----------FTKTGDNPRVNFYGNICLGQ---DISLG----DLTNAYHAVVLTYGADNDKKLNIPGEDGK- 125 (388)
Q Consensus 65 ~~~~~~~-----------~~~~~~~~~i~~~~~~~v~~---~~~~~----~~~~~yd~lvlAtG~~~~~~~~i~g~~~~- 125 (388)
..++.++ +...+++.+++++.+..... .+++. .....||+||||||+.+. .+ ||.+..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~~~~~~~~d~lViAtGs~p~-~~--pg~~~~~ 156 (462)
T PRK06416 80 FKKVQEWKNGVVNRLTGGVEGLLKKNKVDIIRGEAKLVDPNTVRVMTEDGEQTYTAKNIILATGSRPR-EL--PGIEIDG 156 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEeCCCCCC-CC--CCCCCCC
Confidence 1222222 33455677899887764321 12222 123489999999999874 32 444322
Q ss_pred -CeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEee
Q psy4525 126 -NIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGR 204 (388)
Q Consensus 126 -~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r 204 (388)
.+++..+... ....+++++|||+|++|+|+|..|. +.+ .+||++.|
T Consensus 157 ~~v~~~~~~~~------------~~~~~~~vvVvGgG~~g~E~A~~l~--------------------~~g-~~Vtli~~ 203 (462)
T PRK06416 157 RVIWTSDEALN------------LDEVPKSLVVIGGGYIGVEFASAYA--------------------SLG-AEVTIVEA 203 (462)
T ss_pred CeEEcchHhhC------------ccccCCeEEEECCCHHHHHHHHHHH--------------------HcC-CeEEEEEc
Confidence 3444433321 1123689999999999999999775 233 47999999
Q ss_pred cCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceee
Q psy4525 205 RGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEF 284 (388)
Q Consensus 205 ~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i 284 (388)
.+.+...+. +++. ..+.+.+. +.||++++++.++++
T Consensus 204 ~~~~l~~~~-~~~~-------------------------------~~l~~~l~------------~~gV~i~~~~~V~~i 239 (462)
T PRK06416 204 LPRILPGED-KEIS-------------------------------KLAERALK------------KRGIKIKTGAKAKKV 239 (462)
T ss_pred CCCcCCcCC-HHHH-------------------------------HHHHHHHH------------HcCCEEEeCCEEEEE
Confidence 876543322 1211 11222222 578999999999999
Q ss_pred eeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 285 KLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 285 ~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
..++ +.+ .+.+.+ .++.++++||.||+|+|++|+... .++.++ ++.+.+|++.
T Consensus 240 ~~~~-~~v-~v~~~~-----gg~~~~i~~D~vi~a~G~~p~~~~l~l~~~gl~~~-~g~i~vd~~~ 297 (462)
T PRK06416 240 EQTD-DGV-TVTLED-----GGKEETLEADYVLVAVGRRPNTENLGLEELGVKTD-RGFIEVDEQL 297 (462)
T ss_pred EEeC-CEE-EEEEEe-----CCeeEEEEeCEEEEeeCCccCCCCCCchhcCCeec-CCEEeECCCC
Confidence 8643 222 233221 123367999999999999999852 334455 4446666543
|
|
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.7e-25 Score=214.50 Aligned_cols=163 Identities=18% Similarity=0.274 Sum_probs=120.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCC--------------------------------
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGV-------------------------------- 58 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~-------------------------------- 58 (388)
...++|+|||||||||+||.+|++ .|+++++||+++.+||.|.|.-
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~--~G~~v~vfE~~~~vGG~W~~~~~~~~d~~~~~~~~~~~~s~~Y~~L~tn~p~~~ 85 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRR--EGHTVVVFEREKQVGGLWVYTPKSESDPLSLDPTRSIVHSSVYESLRTNLPREC 85 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHh--cCCeEEEEecCCCCcceeecCCCcCCCccccCCCCcccchhhhhhhhccCCHhh
Confidence 456899999999999999999999 8999999999999999996520
Q ss_pred -----CC-------------CCcchhHHHHHHHHhhcCCCcE--EEceEEEEE--------Eeeeccc-----ccccCEE
Q psy4525 59 -----AP-------------DHPEVKNVINTFTKTGDNPRVN--FYGNICLGQ--------DISLGDL-----TNAYHAV 105 (388)
Q Consensus 59 -----~p-------------~~~~~~~~~~~~~~~~~~~~i~--~~~~~~v~~--------~~~~~~~-----~~~yd~l 105 (388)
.| .++...++.++++++++++++. +++++.|.. .++.... +..||+|
T Consensus 86 m~f~dfp~~~~~~~~~~~~~~fp~~~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~~~w~V~~~~~~~~~~~~~~d~V 165 (461)
T PLN02172 86 MGYRDFPFVPRFDDESRDSRRYPSHREVLAYLQDFAREFKIEEMVRFETEVVRVEPVDGKWRVQSKNSGGFSKDEIFDAV 165 (461)
T ss_pred ccCCCCCCCcccccccCcCCCCCCHHHHHHHHHHHHHHcCCcceEEecCEEEEEeecCCeEEEEEEcCCCceEEEEcCEE
Confidence 01 1223467888999999988886 677776632 1222211 2368999
Q ss_pred EEeeCCC-CCCCCCCCCCC-CCC-eeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCccccccc
Q psy4525 106 VLTYGAD-NDKKLNIPGED-GKN-IISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTD 182 (388)
Q Consensus 106 vlAtG~~-~~~~~~i~g~~-~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~ 182 (388)
|+|||.. .++.|++||.+ .++ ++|+..|. ....+++|+|+|||+|+||+|+|..|+
T Consensus 166 IvAtG~~~~P~~P~ipG~~~f~G~~iHs~~yr-----------~~~~~~gk~VvVVG~G~Sg~diA~~L~---------- 224 (461)
T PLN02172 166 VVCNGHYTEPNVAHIPGIKSWPGKQIHSHNYR-----------VPDPFKNEVVVVIGNFASGADISRDIA---------- 224 (461)
T ss_pred EEeccCCCCCcCCCCCCcccCCceEEEecccC-----------CccccCCCEEEEECCCcCHHHHHHHHH----------
Confidence 9999953 23578899874 233 33333332 133467899999999999999999887
Q ss_pred CchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 183 ITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 183 ~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
..+++|+++.|++.
T Consensus 225 -----------~~a~~V~l~~r~~~ 238 (461)
T PLN02172 225 -----------KVAKEVHIASRASE 238 (461)
T ss_pred -----------HhCCeEEEEEeecc
Confidence 34578999999863
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-24 Score=212.20 Aligned_cols=245 Identities=15% Similarity=0.180 Sum_probs=155.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcchhH--HH--------------------
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPEVKN--VI-------------------- 69 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~~~~--~~-------------------- 69 (388)
.+||+|||+||||++||..+.+ .|.+|+|+|+.+.+||.+ +.||.|.+..... ..
T Consensus 3 ~~DvvVIG~GpaG~~AA~~aa~--~G~~V~liE~~~~~GG~c~~~gciPsK~l~~~~~~~~~~~~~~~~~~gi~~~~~~~ 80 (466)
T PRK06115 3 SYDVVIIGGGPGGYNAAIRAGQ--LGLKVACVEGRSTLGGTCLNVGCMPSKALLHASELYEAASGGEFAHLGIEVKPTLN 80 (466)
T ss_pred cccEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCceeeeeccCcccccHHHHHHhHHHHHHhhhhhhhcCccccCccC
Confidence 4799999999999999999999 899999999877899987 7788776532110 00
Q ss_pred ----------------HHHHHhhcCCCcEEEceEE-EE----EEeeeccc---ccccCEEEEeeCCCCCCCCCCCCCCCC
Q psy4525 70 ----------------NTFTKTGDNPRVNFYGNIC-LG----QDISLGDL---TNAYHAVVLTYGADNDKKLNIPGEDGK 125 (388)
Q Consensus 70 ----------------~~~~~~~~~~~i~~~~~~~-v~----~~~~~~~~---~~~yd~lvlAtG~~~~~~~~i~g~~~~ 125 (388)
......+++.+++++.+.. +. ..+...+. ...||+||||||+.|. ++||.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p~---~ipg~~~~ 157 (466)
T PRK06115 81 LAQMMKQKDESVEALTKGVEFLFRKNKVDWIKGWGRLDGVGKVVVKAEDGSETQLEAKDIVIATGSEPT---PLPGVTID 157 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEEcCCCceEEEEeCEEEEeCCCCCC---CCCCCCCC
Confidence 1112223445676664432 11 11222222 2489999999999763 35564433
Q ss_pred C--eeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEe
Q psy4525 126 N--IISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVG 203 (388)
Q Consensus 126 ~--v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~ 203 (388)
+ +++..++.. ....+++++|||+|++|+|+|..|. +.+ .+|+++.
T Consensus 158 ~~~~~~~~~~~~------------~~~~~~~vvIIGgG~ig~E~A~~l~--------------------~~G-~~Vtlie 204 (466)
T PRK06115 158 NQRIIDSTGALS------------LPEVPKHLVVIGAGVIGLELGSVWR--------------------RLG-AQVTVVE 204 (466)
T ss_pred CCeEECHHHHhC------------CccCCCeEEEECCCHHHHHHHHHHH--------------------HcC-CeEEEEe
Confidence 3 333333221 1123689999999999999999775 233 5799999
Q ss_pred ecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCccee
Q psy4525 204 RRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTE 283 (388)
Q Consensus 204 r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~ 283 (388)
+.+.+...+. ++++ +.+.+.+. +.||++++++.+++
T Consensus 205 ~~~~il~~~d-~~~~-------------------------------~~l~~~l~------------~~gV~i~~~~~V~~ 240 (466)
T PRK06115 205 YLDRICPGTD-TETA-------------------------------KTLQKALT------------KQGMKFKLGSKVTG 240 (466)
T ss_pred CCCCCCCCCC-HHHH-------------------------------HHHHHHHH------------hcCCEEEECcEEEE
Confidence 9876543322 1111 12222222 57999999999999
Q ss_pred eeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 284 FKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 284 i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
+..++++. .+.+... ..++++++++|.|++|+|++||+.. .++.++ .+|+++|++.
T Consensus 241 i~~~~~~v--~v~~~~~---~~g~~~~i~~D~vi~a~G~~pn~~~l~~~~~g~~~~-~~G~~vd~~~ 301 (466)
T PRK06115 241 ATAGADGV--SLTLEPA---AGGAAETLQADYVLVAIGRRPYTQGLGLETVGLETD-KRGMLANDHH 301 (466)
T ss_pred EEEcCCeE--EEEEEEc---CCCceeEEEeCEEEEccCCccccccCCcccccceeC-CCCEEECCCe
Confidence 98643232 2222110 1244568999999999999999852 234444 3467776654
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=214.49 Aligned_cols=259 Identities=16% Similarity=0.209 Sum_probs=166.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCC-CCcEEEEcCC--------CCCCCce-eeCCCCCCcc-----------------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLP-QSTVDIYEKL--------PVPFGLV-RYGVAPDHPE----------------- 64 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~-g~~v~lie~~--------~~~gg~~-~~g~~p~~~~----------------- 64 (388)
..+||+|||+||+|+.||..+++ . |.+|+|||+. ..+||.| ++||.|....
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~--~~g~~V~lie~~~~~~~~~~~~~GGtCln~GCiPsK~l~~~a~~~~~~~~~~~~g 79 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAAT--LYKKRVAVIDVQTHHGPPHYAALGGTCVNVGCVPKKLMVTGAQYMDTLRESAGFG 79 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHH--hcCCEEEEEecccCccccccCCccCeecCcCCccHHHHHHHHHHHHHHHHhhccC
Confidence 35899999999999999999999 7 8999999974 4689987 7788865310
Q ss_pred -----------hh-----------HHHHHHHHhhcC-CCcEEEceEEEE---EEeeecc---------cccccCEEEEee
Q psy4525 65 -----------VK-----------NVINTFTKTGDN-PRVNFYGNICLG---QDISLGD---------LTNAYHAVVLTY 109 (388)
Q Consensus 65 -----------~~-----------~~~~~~~~~~~~-~~i~~~~~~~v~---~~~~~~~---------~~~~yd~lvlAt 109 (388)
.. .+...+.+.+++ .+++++.+...- ..+.+.. ....||+|||||
T Consensus 80 i~~~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~l~~~~gv~~i~G~a~f~~~~~v~V~~~~~~~~~~~~~~~~d~lIIAT 159 (486)
T TIGR01423 80 WEFDRSSVKANWKALIAAKNKAVLDINKSYEGMFADTEGLTFFLGWGALEDKNVVLVRESADPKSAVKERLQAEHILLAT 159 (486)
T ss_pred eeccCCccccCHHHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEEEEEEccCCEEEEeeccCCCCCcceEEECCEEEEec
Confidence 00 111112234555 488887554321 1133221 124899999999
Q ss_pred CCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHH
Q psy4525 110 GADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLE 189 (388)
Q Consensus 110 G~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~ 189 (388)
|+.| +.|++||.+ .+++..++.. ....+++++|||+|++|+|+|..+.
T Consensus 160 Gs~p-~~p~i~G~~--~~~~~~~~~~------------~~~~~~~vvIIGgG~iG~E~A~~~~----------------- 207 (486)
T TIGR01423 160 GSWP-QMLGIPGIE--HCISSNEAFY------------LDEPPRRVLTVGGGFISVEFAGIFN----------------- 207 (486)
T ss_pred CCCC-CCCCCCChh--heechhhhhc------------cccCCCeEEEECCCHHHHHHHHHHH-----------------
Confidence 9998 578888864 2333333221 1123689999999999999998664
Q ss_pred hhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCC
Q psy4525 190 KLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNC 269 (388)
Q Consensus 190 ~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 269 (388)
.+...+ .+||++.+.+.+...+. ++++ +.+.+.|.
T Consensus 208 ~l~~~G-~~Vtli~~~~~il~~~d-~~~~-------------------------------~~l~~~L~------------ 242 (486)
T TIGR01423 208 AYKPRG-GKVTLCYRNNMILRGFD-STLR-------------------------------KELTKQLR------------ 242 (486)
T ss_pred HhccCC-CeEEEEecCCccccccC-HHHH-------------------------------HHHHHHHH------------
Confidence 111223 58999999887643322 2221 22222222
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKE 344 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~ 344 (388)
+.||++++++.++++..++++ ...+.+ .+++++++|.|++|+|++||+.. .++.+++++.+.+|+.
T Consensus 243 ~~GI~i~~~~~v~~i~~~~~~-~~~v~~--------~~g~~i~~D~vl~a~G~~Pn~~~l~l~~~gl~~~~~G~I~Vd~~ 313 (486)
T TIGR01423 243 ANGINIMTNENPAKVTLNADG-SKHVTF--------ESGKTLDVDVVMMAIGRVPRTQTLQLDKVGVELTKKGAIQVDEF 313 (486)
T ss_pred HcCCEEEcCCEEEEEEEcCCc-eEEEEE--------cCCCEEEcCEEEEeeCCCcCcccCCchhhCceECCCCCEecCCC
Confidence 679999999999999754333 233433 23457999999999999999852 3455665555777765
Q ss_pred CCCeecchhhHHhHH
Q psy4525 345 GVPVVTWEGWKAIDK 359 (388)
Q Consensus 345 ~~~~~~~~~w~~~~~ 359 (388)
... -..+.|...|+
T Consensus 314 l~T-s~~~IyA~GDv 327 (486)
T TIGR01423 314 SRT-NVPNIYAIGDV 327 (486)
T ss_pred CcC-CCCCEEEeeec
Confidence 432 12344544443
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.3e-25 Score=217.74 Aligned_cols=164 Identities=25% Similarity=0.358 Sum_probs=113.6
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCC---------C-----------------------CC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGV---------A-----------------------PD 61 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~---------~-----------------------p~ 61 (388)
++|+|||||++||++|+.|.+ .|+++++||+++.+||.|+|.- . |.
T Consensus 2 krVaVIGaG~sGL~a~k~l~e--~g~~~~~fE~~~~iGG~W~~~~~~~~g~~~~y~sl~~n~sk~~~~fsdfp~p~~~p~ 79 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLE--EGLEVTCFEKSDDIGGLWRYTENPEDGRSSVYDSLHTNTSKEMMAFSDFPFPEDYPD 79 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHH--TT-EEEEEESSSSSSGGGCHSTTCCCSEGGGSTT-B-SS-GGGSCCTTS-HCCCCSS
T ss_pred CEEEEECccHHHHHHHHHHHH--CCCCCeEEecCCCCCccCeeCCcCCCCccccccceEEeeCchHhcCCCcCCCCCCCC
Confidence 799999999999999999999 8999999999999999996521 0 33
Q ss_pred CcchhHHHHHHHHhhcCCCc--EEEceEEEEEE-------------eeecc-c---ccccCEEEEeeCCCC-CCCC--CC
Q psy4525 62 HPEVKNVINTFTKTGDNPRV--NFYGNICLGQD-------------ISLGD-L---TNAYHAVVLTYGADN-DKKL--NI 119 (388)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~i--~~~~~~~v~~~-------------~~~~~-~---~~~yd~lvlAtG~~~-~~~~--~i 119 (388)
++...++.++++.+++++++ .+++++.|... ++... . ...||+||+|||... +..| .+
T Consensus 80 f~~~~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d~~~~~~W~V~~~~~g~~~~~~fD~VvvatG~~~~P~~P~~~~ 159 (531)
T PF00743_consen 80 FPSHSEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPDFSATGKWEVTTENDGKEETEEFDAVVVATGHFSKPNIPEPSF 159 (531)
T ss_dssp SEBHHHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETTTT-ETEEEEEETTTTEEEEEEECEEEEEE-SSSCESB-----
T ss_pred CCCHHHHHHHHHHHHhhhCCcceEEEccEEeEeeeccccCCCceEEEEeecCCeEEEEEeCeEEEcCCCcCCCCCChhhh
Confidence 45578899999999998887 47788776421 22221 1 136999999999654 2233 37
Q ss_pred CCCC--CCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCc
Q psy4525 120 PGED--GKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIK 197 (388)
Q Consensus 120 ~g~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (388)
||.+ ...++|+.+|.. ...+++|+|+|||+|+||+|+|.+|+ ..++
T Consensus 160 ~G~e~F~G~i~HS~~yr~-----------~~~f~gKrVlVVG~g~Sg~DIa~el~---------------------~~a~ 207 (531)
T PF00743_consen 160 PGLEKFKGEIIHSKDYRD-----------PEPFKGKRVLVVGGGNSGADIAVELS---------------------RVAK 207 (531)
T ss_dssp CTGGGHCSEEEEGGG--T-----------GGGGTTSEEEEESSSHHHHHHHHHHT---------------------TTSC
T ss_pred hhhhcCCeeEEccccCcC-----------hhhcCCCEEEEEeCCHhHHHHHHHHH---------------------HhcC
Confidence 7864 234667776652 34567999999999999999999997 4567
Q ss_pred EEEEEeecCccccc
Q psy4525 198 SVNLVGRRGALQVA 211 (388)
Q Consensus 198 ~V~~i~r~~~~~~~ 211 (388)
+|++..|++.|..+
T Consensus 208 ~v~~s~R~~~wv~p 221 (531)
T PF00743_consen 208 KVYLSTRRGAWVLP 221 (531)
T ss_dssp CEEEECC-------
T ss_pred CeEEEEeccccccc
Confidence 89999999999876
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.8e-24 Score=210.79 Aligned_cols=241 Identities=15% Similarity=0.173 Sum_probs=162.2
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcch---------------------------
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPEV--------------------------- 65 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~~--------------------------- 65 (388)
++|+|||+||+|+.+|..+.+ .|.+|+++|+.. +||.+ ++||.|.+...
T Consensus 2 ~~vvviG~G~~G~~~a~~~~~--~g~~v~~~e~~~-~gG~c~~~gciPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 78 (466)
T PRK07845 2 TRIVIIGGGPGGYEAALVAAQ--LGADVTVIERDG-LGGAAVLTDCVPSKTLIATAEVRTELRRAAELGIRFIDDGEARV 78 (466)
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCeEEEEEccC-CCCcccccCCcchHHHHHHHHHHHHHHHHHhCCcccccCccccc
Confidence 689999999999999999999 899999999874 78877 67887654211
Q ss_pred --hH-----------HHHHHHHhhcCCCcEEEceEEEE-------EE--eeeccc---ccccCEEEEeeCCCCCCCCCCC
Q psy4525 66 --KN-----------VINTFTKTGDNPRVNFYGNICLG-------QD--ISLGDL---TNAYHAVVLTYGADNDKKLNIP 120 (388)
Q Consensus 66 --~~-----------~~~~~~~~~~~~~i~~~~~~~v~-------~~--~~~~~~---~~~yd~lvlAtG~~~~~~~~i~ 120 (388)
.. +...+.+.+++.+++++.+.... .. +...+. ...||+||||||+.+. .++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~l~~~gV~~~~g~~~~~~~~~~~~~v~V~~~~g~~~~~~~d~lViATGs~p~-~~p~~ 157 (466)
T PRK07845 79 DLPAVNARVKALAAAQSADIRARLEREGVRVIAGRGRLIDPGLGPHRVKVTTADGGEETLDADVVLIATGASPR-ILPTA 157 (466)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEeecccCCCEEEEEeCCCceEEEecCEEEEcCCCCCC-CCCCC
Confidence 00 11233445667789988775433 11 222222 2489999999999883 55555
Q ss_pred CCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEE
Q psy4525 121 GEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVN 200 (388)
Q Consensus 121 g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 200 (388)
+.+.+++++..++.. ....+++++|||+|.+|+|+|..|+ ....+|+
T Consensus 158 ~~~~~~v~~~~~~~~------------~~~~~~~vvVIGgG~ig~E~A~~l~---------------------~~g~~Vt 204 (466)
T PRK07845 158 EPDGERILTWRQLYD------------LDELPEHLIVVGSGVTGAEFASAYT---------------------ELGVKVT 204 (466)
T ss_pred CCCCceEEeehhhhc------------ccccCCeEEEECCCHHHHHHHHHHH---------------------HcCCeEE
Confidence 544455665554431 1112589999999999999999876 2235799
Q ss_pred EEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCc
Q psy4525 201 LVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRS 280 (388)
Q Consensus 201 ~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~ 280 (388)
++.+.+.+...+. +++. ..+.+.|. +.||+++++..
T Consensus 205 li~~~~~~l~~~d-~~~~-------------------------------~~l~~~L~------------~~gV~i~~~~~ 240 (466)
T PRK07845 205 LVSSRDRVLPGED-ADAA-------------------------------EVLEEVFA------------RRGMTVLKRSR 240 (466)
T ss_pred EEEcCCcCCCCCC-HHHH-------------------------------HHHHHHHH------------HCCcEEEcCCE
Confidence 9999876544322 2221 11222222 57999999999
Q ss_pred ceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 281 PTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 281 ~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
+.++..++ +.+ .+.+ .+++++++|.|++|+|++||+.. .++++++++.+.+|+..
T Consensus 241 v~~v~~~~-~~~-~v~~--------~~g~~l~~D~vl~a~G~~pn~~~l~l~~~gl~~~~~G~i~Vd~~~ 300 (466)
T PRK07845 241 AESVERTG-DGV-VVTL--------TDGRTVEGSHALMAVGSVPNTAGLGLEEAGVELTPSGHITVDRVS 300 (466)
T ss_pred EEEEEEeC-CEE-EEEE--------CCCcEEEecEEEEeecCCcCCCCCCchhhCceECCCCcEeECCCc
Confidence 99997543 222 2332 23457999999999999999852 45666665557777654
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.7e-25 Score=207.15 Aligned_cols=264 Identities=19% Similarity=0.227 Sum_probs=168.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC-CCceeeCCCCCCcchhHHHHHHHHhhcCCC-cEEEceEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP-FGLVRYGVAPDHPEVKNVINTFTKTGDNPR-VNFYGNICL 89 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~-gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~-i~~~~~~~v 89 (388)
.+++|||||||++|+++|..|.+..++.+|+++|+.+.. .-.+.|.+..+.....++...+.+.++..+ ++|..++..
T Consensus 2 ~~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~hl~~plL~eva~g~l~~~~i~~p~~~~~~~~~~v~~~~~~V~ 81 (405)
T COG1252 2 MKKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYHLFTPLLYEVATGTLSESEIAIPLRALLRKSGNVQFVQGEVT 81 (405)
T ss_pred CCceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCccccchhhhhhhcCCCChhheeccHHHHhcccCceEEEEEEEE
Confidence 357999999999999999999995224899999998764 233344443344456677777888888554 999988877
Q ss_pred EEE-----eeecc-cccccCEEEEeeCCCCCCCCCCCCCC-----CCCeeecccccccccCCCCccc-cCcCCCCCeEEE
Q psy4525 90 GQD-----ISLGD-LTNAYHAVVLTYGADNDKKLNIPGED-----GKNIISARSFVGWYNGLPEDAS-LDLSLDCEEATI 157 (388)
Q Consensus 90 ~~~-----~~~~~-~~~~yd~lvlAtG~~~~~~~~i~g~~-----~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~vvV 157 (388)
..+ +++.+ ....||+||+|+|+.+ ..+.+||.. ...+-.+..+..++........ ......-.+++|
T Consensus 82 ~ID~~~k~V~~~~~~~i~YD~LVvalGs~~-~~fgi~G~~E~a~~lks~edA~~ir~~l~~~fe~a~~~~~~~~~lti~I 160 (405)
T COG1252 82 DIDRDAKKVTLADLGEISYDYLVVALGSET-NYFGIPGAAEYAFGLKTLEDALRLRRHLLEAFEKASQEEDDRALLTIVI 160 (405)
T ss_pred EEcccCCEEEeCCCccccccEEEEecCCcC-CcCCCCCHHHhCCCCCCHHHHHHHHHHHHHHHHHhhccccccceeEEEE
Confidence 544 55555 3458999999999999 489999843 1122222222222110000000 000011247999
Q ss_pred EcCChHHHHHHHHhccCCcccccc-cCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccc
Q psy4525 158 LGQGNVAMDVARILLSPVDQLKST-DITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLC 236 (388)
Q Consensus 158 IGgG~sg~e~a~~L~~~~~~~~~~-~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~ 236 (388)
+|||++|+|+|.+|+...+.+.+. ... .. --+|+++.+.+.+...|.+.-
T Consensus 161 vGgG~TGVElAgeL~~~~~~l~~~~~~~--------~~-~~~V~LVea~p~ILp~~~~~l-------------------- 211 (405)
T COG1252 161 VGGGPTGVELAGELAERLHRLLKKFRVD--------PS-ELRVILVEAGPRILPMFPPKL-------------------- 211 (405)
T ss_pred ECCChhHHHHHHHHHHHHHHHhhhhcCC--------cc-ccEEEEEccCchhccCCCHHH--------------------
Confidence 999999999999998443333111 000 01 127999999988765544211
Q ss_pred cchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCcee-EEecce
Q psy4525 237 GVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTE-LIPSGI 315 (388)
Q Consensus 237 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~-~l~~D~ 315 (388)
.......| .+.||++++++.|+++..+. +. ..++. +|+||+
T Consensus 212 ------------~~~a~~~L------------~~~GV~v~l~~~Vt~v~~~~------v~--------~~~g~~~I~~~t 253 (405)
T COG1252 212 ------------SKYAERAL------------EKLGVEVLLGTPVTEVTPDG------VT--------LKDGEEEIPADT 253 (405)
T ss_pred ------------HHHHHHHH------------HHCCCEEEcCCceEEECCCc------EE--------EccCCeeEecCE
Confidence 11222222 27899999999999998432 22 23333 699999
Q ss_pred EEEccccCCccCCCC---CcccCCCccccCC
Q psy4525 316 AFRSIGYQSRCVDSD---IPFNEKSCTVIPK 343 (388)
Q Consensus 316 Vi~a~G~~p~~~~~~---l~~~~~~gi~l~~ 343 (388)
+|||+|.+++++... ++.+..++++++.
T Consensus 254 vvWaaGv~a~~~~~~l~~~e~dr~Grl~V~~ 284 (405)
T COG1252 254 VVWAAGVRASPLLKDLSGLETDRRGRLVVNP 284 (405)
T ss_pred EEEcCCCcCChhhhhcChhhhccCCCEEeCC
Confidence 999999999987533 4445445565543
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=1e-23 Score=209.74 Aligned_cols=230 Identities=15% Similarity=0.164 Sum_probs=148.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcc-------------------------
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPE------------------------- 64 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~------------------------- 64 (388)
...+||+||||||||++||..+++ .|.+|+|+|+. .+||.| ++||.|.+..
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~--~G~~v~lie~~-~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~ 78 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQ--LGLKTALVEKG-KLGGTCLHKGCIPSKALLHSAEVFQTAKKASPFGISVSGPAL 78 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHh--CCCeEEEEEcc-CCCcceEcCCcCchHHHHHHHHHHHHHHHHHhcCccCCCCcc
Confidence 346899999999999999999999 89999999986 789888 6677765321
Q ss_pred -hhH-------H----HHHHHHhhcCCCcEEEceEEEE------------EEeeeccc---ccccCEEEEeeCCCCCCCC
Q psy4525 65 -VKN-------V----INTFTKTGDNPRVNFYGNICLG------------QDISLGDL---TNAYHAVVLTYGADNDKKL 117 (388)
Q Consensus 65 -~~~-------~----~~~~~~~~~~~~i~~~~~~~v~------------~~~~~~~~---~~~yd~lvlAtG~~~~~~~ 117 (388)
... + ...+.+.+++.+++++.+.... ..+...+. ...||+||||||+.+. .+
T Consensus 79 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~a~~i~~~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~-~~ 157 (472)
T PRK05976 79 DFAKVQERKDGIVDRLTKGVAALLKKGKIDVFHGIGRILGPSIFSPMPGTVSVETETGENEMIIPENLLIATGSRPV-EL 157 (472)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeCCCCCcCCceEEEEEeCCCceEEEEcCEEEEeCCCCCC-CC
Confidence 001 1 1112344566788888775321 11222222 3489999999999873 33
Q ss_pred CCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCc
Q psy4525 118 NIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIK 197 (388)
Q Consensus 118 ~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (388)
+....+...+++..+... ....+++++|||+|++|+|+|..|+ +.+ .
T Consensus 158 p~~~~~~~~~~~~~~~~~------------~~~~~~~vvIIGgG~~G~E~A~~l~--------------------~~g-~ 204 (472)
T PRK05976 158 PGLPFDGEYVISSDEALS------------LETLPKSLVIVGGGVIGLEWASMLA--------------------DFG-V 204 (472)
T ss_pred CCCCCCCceEEcchHhhC------------ccccCCEEEEECCCHHHHHHHHHHH--------------------HcC-C
Confidence 222222223444433321 1123689999999999999999876 223 5
Q ss_pred EEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEe
Q psy4525 198 SVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIF 277 (388)
Q Consensus 198 ~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~ 277 (388)
+|+++.|.+.+...+. +++. +.+.+.+ .+.||++++
T Consensus 205 ~Vtli~~~~~il~~~~-~~~~-------------------------------~~l~~~l------------~~~gI~i~~ 240 (472)
T PRK05976 205 EVTVVEAADRILPTED-AELS-------------------------------KEVARLL------------KKLGVRVVT 240 (472)
T ss_pred eEEEEEecCccCCcCC-HHHH-------------------------------HHHHHHH------------HhcCCEEEe
Confidence 7999999876533221 1111 1122222 257999999
Q ss_pred cCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccC
Q psy4525 278 LRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCV 327 (388)
Q Consensus 278 ~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~ 327 (388)
++.++++....++.+..+... .++.++++||.||+|+|.+||..
T Consensus 241 ~~~v~~i~~~~~~~~~~~~~~------~g~~~~i~~D~vi~a~G~~p~~~ 284 (472)
T PRK05976 241 GAKVLGLTLKKDGGVLIVAEH------NGEEKTLEADKVLVSVGRRPNTE 284 (472)
T ss_pred CcEEEEEEEecCCCEEEEEEe------CCceEEEEeCEEEEeeCCccCCC
Confidence 999999974212333333221 23345799999999999999974
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-24 Score=206.74 Aligned_cols=246 Identities=14% Similarity=0.165 Sum_probs=160.4
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC-CCc--eeeCCCCCCcchhHHHH-HHHHhhcCCCcEEEceEEE
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP-FGL--VRYGVAPDHPEVKNVIN-TFTKTGDNPRVNFYGNICL 89 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~-gg~--~~~g~~p~~~~~~~~~~-~~~~~~~~~~i~~~~~~~v 89 (388)
++|||||||+||+++|..|++..++.+|+||++++.. +.. +.+.+ .......++.. ...+++++++++++.++.+
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~~~y~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V 81 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSGDEYNKPDLSHVF-SQGQRADDLTRQSAGEFAEQFNLRLFPHTWV 81 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCCCCcCcCcCcHHH-hCCCCHHHhhcCCHHHHHHhCCCEEECCCEE
Confidence 5899999999999999999987678899999988642 211 11111 12223334433 2445567789999877655
Q ss_pred E-EE-----eeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChH
Q psy4525 90 G-QD-----ISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNV 163 (388)
Q Consensus 90 ~-~~-----~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~s 163 (388)
. .+ ++.++....||+||+|||+.+ +.|++||.+. +++...+..... +. .....+++|+|||+|++
T Consensus 82 ~~id~~~~~v~~~~~~~~yd~LVlATG~~~-~~p~i~G~~~--v~~~~~~~~~~~----~~--~~~~~~~~vvViGgG~~ 152 (377)
T PRK04965 82 TDIDAEAQVVKSQGNQWQYDKLVLATGASA-FVPPIPGREL--MLTLNSQQEYRA----AE--TQLRDAQRVLVVGGGLI 152 (377)
T ss_pred EEEECCCCEEEECCeEEeCCEEEECCCCCC-CCCCCCCCce--EEEECCHHHHHH----HH--HHhhcCCeEEEECCCHH
Confidence 3 22 333333458999999999988 4788998653 555444321100 00 11224689999999999
Q ss_pred HHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhc
Q psy4525 164 AMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASA 243 (388)
Q Consensus 164 g~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~ 243 (388)
|+|+|..|. +. ..+|+++.+.+.+...+.++++.
T Consensus 153 g~e~A~~L~--------------------~~-g~~Vtlv~~~~~~l~~~~~~~~~------------------------- 186 (377)
T PRK04965 153 GTELAMDLC--------------------RA-GKAVTLVDNAASLLASLMPPEVS------------------------- 186 (377)
T ss_pred HHHHHHHHH--------------------hc-CCeEEEEecCCcccchhCCHHHH-------------------------
Confidence 999999886 22 35799999987654322222211
Q ss_pred cccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccC
Q psy4525 244 TLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 244 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
+.+.+.+. +.|+++++++.++++..++ +. ..+.+ .++++++||.||+|+|++
T Consensus 187 ------~~l~~~l~------------~~gV~i~~~~~v~~i~~~~-~~-~~v~~--------~~g~~i~~D~vI~a~G~~ 238 (377)
T PRK04965 187 ------SRLQHRLT------------EMGVHLLLKSQLQGLEKTD-SG-IRATL--------DSGRSIEVDAVIAAAGLR 238 (377)
T ss_pred ------HHHHHHHH------------hCCCEEEECCeEEEEEccC-CE-EEEEE--------cCCcEEECCEEEECcCCC
Confidence 22222222 5789999999999998543 22 23333 345689999999999999
Q ss_pred CccCC---CCCcccCCCccccCCCC
Q psy4525 324 SRCVD---SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 324 p~~~~---~~l~~~~~~gi~l~~~~ 345 (388)
|+... .++..+ +|+.+|++.
T Consensus 239 p~~~l~~~~gl~~~--~gi~vd~~l 261 (377)
T PRK04965 239 PNTALARRAGLAVN--RGIVVDSYL 261 (377)
T ss_pred cchHHHHHCCCCcC--CCEEECCCc
Confidence 98632 355553 578887643
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=209.86 Aligned_cols=259 Identities=18% Similarity=0.207 Sum_probs=175.2
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceee--CCC--C--CCcchhHHHHHHHHhhcCCCcEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY--GVA--P--DHPEVKNVINTFTKTGDNPRVNFY 84 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~--g~~--p--~~~~~~~~~~~~~~~~~~~~i~~~ 84 (388)
...++|+||||||||++||.++++ .|.+|+||+. .+||.+.. ++. + ......++...+.+++++.+++++
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~--~G~~v~li~~--~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~gv~i~ 285 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAAR--KGLRTAMVAE--RIGGQVKDTVGIENLISVPYTTGSQLAANLEEHIKQYPIDLM 285 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEec--CCCCccccCcCcccccccCCCCHHHHHHHHHHHHHHhCCeEE
Confidence 446899999999999999999999 8999999975 47887632 110 1 113456778888888888899998
Q ss_pred ceEEEEE--------Eeeeccc-ccccCEEEEeeCCCCCCCCCCCCCC---CCCeeecccccccccCCCCccccCcCCCC
Q psy4525 85 GNICLGQ--------DISLGDL-TNAYHAVVLTYGADNDKKLNIPGED---GKNIISARSFVGWYNGLPEDASLDLSLDC 152 (388)
Q Consensus 85 ~~~~v~~--------~~~~~~~-~~~yd~lvlAtG~~~~~~~~i~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (388)
.++.+.. .+...+. ...||+||+|||+.+ +.+++||.. ..+++.... +. .....+
T Consensus 286 ~~~~V~~I~~~~~~~~v~~~~g~~i~~d~lIlAtGa~~-~~~~ipG~~~~~~~~v~~~~~----------~~--~~~~~~ 352 (515)
T TIGR03140 286 ENQRAKKIETEDGLIVVTLESGEVLKAKSVIVATGARW-RKLGVPGEKEYIGKGVAYCPH----------CD--GPFFKG 352 (515)
T ss_pred cCCEEEEEEecCCeEEEEECCCCEEEeCEEEECCCCCc-CCCCCCCHHHcCCCeEEEeec----------cC--hhhcCC
Confidence 7765531 1233333 247999999999987 578888853 112221111 10 112357
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecc
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRN 232 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~ 232 (388)
++|+|||||++|+|+|..|+ ...++||++.+.+.+...
T Consensus 353 k~VvViGgG~~g~E~A~~L~---------------------~~g~~Vtli~~~~~l~~~--------------------- 390 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLA---------------------GIVRHVTVLEFADELKAD--------------------- 390 (515)
T ss_pred CEEEEECCcHHHHHHHHHHH---------------------hcCcEEEEEEeCCcCChh---------------------
Confidence 89999999999999999886 234689999887643210
Q ss_pred cccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEe
Q psy4525 233 EQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIP 312 (388)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~ 312 (388)
..+...+. ...||++++++.++++..+ ++.+..+.+.++. ++++++++
T Consensus 391 -----------------~~l~~~l~-----------~~~gV~i~~~~~v~~i~~~-~~~v~~v~~~~~~---~~~~~~i~ 438 (515)
T TIGR03140 391 -----------------KVLQDKLK-----------SLPNVDILTSAQTTEIVGD-GDKVTGIRYQDRN---SGEEKQLD 438 (515)
T ss_pred -----------------HHHHHHHh-----------cCCCCEEEECCeeEEEEcC-CCEEEEEEEEECC---CCcEEEEE
Confidence 01111111 1369999999999999864 3677777765431 34557899
Q ss_pred cceEEEccccCCccCC--CCCcccCCCccccCCCCCCeecchhhHHhHHHH
Q psy4525 313 SGIAFRSIGYQSRCVD--SDIPFNEKSCTVIPKEGVPVVTWEGWKAIDKEE 361 (388)
Q Consensus 313 ~D~Vi~a~G~~p~~~~--~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~~~ 361 (388)
||.|++|+|++||+.. ..+.++.++++.+|+.... -..+.|...|+..
T Consensus 439 ~D~vi~a~G~~Pn~~~l~~~~~~~~~G~I~vd~~~~T-s~p~IyAaGDv~~ 488 (515)
T TIGR03140 439 LDGVFVQIGLVPNTEWLKDAVELNRRGEIVIDERGRT-SVPGIFAAGDVTT 488 (515)
T ss_pred cCEEEEEeCCcCCchHHhhhcccCCCCeEEECCCCCC-CCCCEEEcccccC
Confidence 9999999999999842 1255665556777766542 2346677777653
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-23 Score=208.81 Aligned_cols=258 Identities=18% Similarity=0.218 Sum_probs=175.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee--eCCC--C--CCcchhHHHHHHHHhhcCCCcEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR--YGVA--P--DHPEVKNVINTFTKTGDNPRVNFY 84 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~--~g~~--p--~~~~~~~~~~~~~~~~~~~~i~~~ 84 (388)
...++|+||||||||++||.++++ .|+++++|++. +||.+. +++. + .+....++...+.+++++++++++
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~--~G~~v~li~~~--~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~i~ 284 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAAR--KGIRTGIVAER--FGGQVLDTMGIENFISVPETEGPKLAAALEEHVKEYDVDIM 284 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecC--CCCeeeccCcccccCCCCCCCHHHHHHHHHHHHHHCCCEEE
Confidence 346899999999999999999999 89999999864 788773 2221 1 123567788888888988999988
Q ss_pred ceEEEEE--------Eeeeccc-ccccCEEEEeeCCCCCCCCCCCCCC---CCCeeecccccccccCCCCccccCcCCCC
Q psy4525 85 GNICLGQ--------DISLGDL-TNAYHAVVLTYGADNDKKLNIPGED---GKNIISARSFVGWYNGLPEDASLDLSLDC 152 (388)
Q Consensus 85 ~~~~v~~--------~~~~~~~-~~~yd~lvlAtG~~~~~~~~i~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (388)
.++.+.. .+...+. ...||.||+|||+.+ +.+++||.. ..+++... .+. .....+
T Consensus 285 ~~~~V~~I~~~~~~~~V~~~~g~~i~a~~vViAtG~~~-r~~~ipG~~~~~~~~v~~~~----------~~~--~~~~~g 351 (517)
T PRK15317 285 NLQRASKLEPAAGLIEVELANGAVLKAKTVILATGARW-RNMNVPGEDEYRNKGVAYCP----------HCD--GPLFKG 351 (517)
T ss_pred cCCEEEEEEecCCeEEEEECCCCEEEcCEEEECCCCCc-CCCCCCCHHHhcCceEEEee----------ccC--chhcCC
Confidence 7765532 1222232 237999999999987 678888853 11222111 111 223458
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecc
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRN 232 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~ 232 (388)
++|+|||+|++|+|+|..|+ ...++|+++.|.+.+...
T Consensus 352 k~VvVVGgG~~g~e~A~~L~---------------------~~~~~Vtlv~~~~~l~~~--------------------- 389 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLA---------------------GIVKHVTVLEFAPELKAD--------------------- 389 (517)
T ss_pred CEEEEECCCHHHHHHHHHHH---------------------hcCCEEEEEEECcccccc---------------------
Confidence 99999999999999999886 334689999988653211
Q ss_pred cccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEe
Q psy4525 233 EQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIP 312 (388)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~ 312 (388)
+.+...+ ....||++++++.++++..+ ++.+..+++.+. .+++.++++
T Consensus 390 -----------------~~l~~~l-----------~~~~gI~i~~~~~v~~i~~~-~g~v~~v~~~~~---~~g~~~~i~ 437 (517)
T PRK15317 390 -----------------QVLQDKL-----------RSLPNVTIITNAQTTEVTGD-GDKVTGLTYKDR---TTGEEHHLE 437 (517)
T ss_pred -----------------HHHHHHH-----------hcCCCcEEEECcEEEEEEcC-CCcEEEEEEEEC---CCCcEEEEE
Confidence 0011111 11369999999999999864 367777776542 134456899
Q ss_pred cceEEEccccCCccCC--CCCcccCCCccccCCCCCCeecchhhHHhHHH
Q psy4525 313 SGIAFRSIGYQSRCVD--SDIPFNEKSCTVIPKEGVPVVTWEGWKAIDKE 360 (388)
Q Consensus 313 ~D~Vi~a~G~~p~~~~--~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~~ 360 (388)
||.|++++|++||+.. ..+.+++++.+.+|+.... -..+.|...|+.
T Consensus 438 ~D~v~~~~G~~p~~~~l~~~v~~~~~g~i~vd~~l~T-s~p~IyAaGDv~ 486 (517)
T PRK15317 438 LEGVFVQIGLVPNTEWLKGTVELNRRGEIIVDARGAT-SVPGVFAAGDCT 486 (517)
T ss_pred cCEEEEeECCccCchHHhhheeeCCCCcEEECcCCCC-CCCCEEECcccc
Confidence 9999999999998742 1255665555667655432 223566666654
|
|
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.1e-24 Score=209.08 Aligned_cols=250 Identities=17% Similarity=0.220 Sum_probs=161.2
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCc--------------------------chh
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHP--------------------------EVK 66 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~--------------------------~~~ 66 (388)
+|++|||+||+|.+||.. . .|.+|+|+|+. .+||.| ++||.|.+. ...
T Consensus 2 yD~vVIG~G~~g~~aa~~--~--~G~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~ 76 (451)
T PRK07846 2 YDLIIIGTGSGNSILDER--F--ADKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAADVARTIREAARLGVDAELDGVRWP 76 (451)
T ss_pred CCEEEECCCHHHHHHHHH--H--CCCeEEEEeCC-CCCCcccCcCcchhHHHHHHHHHHHHHHHHHhCCccCCCCcCCHH
Confidence 799999999999988765 4 59999999986 577776 778877531 011
Q ss_pred HHHHH-------H-----HHh-hcCCCcEEEceEEEEE---Eeeeccc-ccccCEEEEeeCCCCCCCCCCCCCCCCCeee
Q psy4525 67 NVINT-------F-----TKT-GDNPRVNFYGNICLGQ---DISLGDL-TNAYHAVVLTYGADNDKKLNIPGEDGKNIIS 129 (388)
Q Consensus 67 ~~~~~-------~-----~~~-~~~~~i~~~~~~~v~~---~~~~~~~-~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~ 129 (388)
++.++ + ... ++..+++++.+...-. .+++.+. ...||+||||||+.+ +.|++||.+...+++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~V~v~~g~~~~~d~lViATGs~p-~~p~i~g~~~~~~~~ 155 (451)
T PRK07846 77 DIVSRVFGRIDPIAAGGEEYRGRDTPNIDVYRGHARFIGPKTLRTGDGEEITADQVVIAAGSRP-VIPPVIADSGVRYHT 155 (451)
T ss_pred HHHHHHHHHHHHHhccchhhhhhhhCCcEEEEEEEEEecCCEEEECCCCEEEeCEEEEcCCCCC-CCCCCCCcCCccEEc
Confidence 11111 1 111 4456777776554322 2444433 348999999999998 578888865444444
Q ss_pred cccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCccc
Q psy4525 130 ARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQ 209 (388)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~ 209 (388)
..++.. ....+++++|||+|++|+|+|..|. +.+ .+|+++.|++.+.
T Consensus 156 ~~~~~~------------l~~~~~~vvIIGgG~iG~E~A~~l~--------------------~~G-~~Vtli~~~~~ll 202 (451)
T PRK07846 156 SDTIMR------------LPELPESLVIVGGGFIAAEFAHVFS--------------------ALG-VRVTVVNRSGRLL 202 (451)
T ss_pred hHHHhh------------hhhcCCeEEEECCCHHHHHHHHHHH--------------------HcC-CeEEEEEcCCccc
Confidence 444331 1123689999999999999999876 233 5799999987654
Q ss_pred ccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCC
Q psy4525 210 VAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDN 289 (388)
Q Consensus 210 ~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~ 289 (388)
..+. +++.+ .+.+.+ +.+++++++..++++..++
T Consensus 203 ~~~d-~~~~~-------------------------------~l~~l~-------------~~~v~i~~~~~v~~i~~~~- 236 (451)
T PRK07846 203 RHLD-DDISE-------------------------------RFTELA-------------SKRWDVRLGRNVVGVSQDG- 236 (451)
T ss_pred cccC-HHHHH-------------------------------HHHHHH-------------hcCeEEEeCCEEEEEEEcC-
Confidence 2221 22211 111111 3579999999999997543
Q ss_pred CceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCCCCeecchhhHHhH
Q psy4525 290 GAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEGVPVVTWEGWKAID 358 (388)
Q Consensus 290 ~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~ 358 (388)
+.+ .+.+ .++++++||.|++|+|++||+.. .++.+++++.+.+|++... -..+.|...|
T Consensus 237 ~~v-~v~~--------~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~Vd~~~~T-s~p~IyA~GD 300 (451)
T PRK07846 237 SGV-TLRL--------DDGSTVEADVLLVATGRVPNGDLLDAAAAGVDVDEDGRVVVDEYQRT-SAEGVFALGD 300 (451)
T ss_pred CEE-EEEE--------CCCcEeecCEEEEEECCccCccccCchhcCceECCCCcEeECCCccc-CCCCEEEEee
Confidence 222 2332 34568999999999999999842 3456666666777765432 2234444444
|
|
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-24 Score=224.17 Aligned_cols=246 Identities=17% Similarity=0.225 Sum_probs=166.2
Q ss_pred EEEECccHHHHHHHHHHHhhC-CCCcEEEEcCCCCCCCceeeCC---CCCCcchhHHHHHHHHhhcCCCcEEEceEEEE-
Q psy4525 16 VCIVGSGPAGFYCAQQILKLL-PQSTVDIYEKLPVPFGLVRYGV---APDHPEVKNVINTFTKTGDNPRVNFYGNICLG- 90 (388)
Q Consensus 16 vvIIGaG~aGl~aA~~l~~~~-~g~~v~lie~~~~~gg~~~~g~---~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~- 90 (388)
|||||+|+||+++|..|++.. .+++|+||++++.++ +.+... .......+++.....+++++.+++++.++.+.
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~-y~r~~L~~~l~g~~~~~~l~~~~~~~~~~~gv~~~~g~~V~~ 79 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN-YNRILLSSVLQGEADLDDITLNSKDWYEKHGITLYTGETVIQ 79 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC-cccccccHHHCCCCCHHHccCCCHHHHHHCCCEEEcCCeEEE
Confidence 689999999999999998854 568999999998763 111111 11122334444444566677899999886553
Q ss_pred EE-----eeeccc-ccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHH
Q psy4525 91 QD-----ISLGDL-TNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVA 164 (388)
Q Consensus 91 ~~-----~~~~~~-~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg 164 (388)
.+ +.+.+. ...||+||+|||+.+ +.|++||.+.+++++.+.+..... + . .....+++++|||||++|
T Consensus 80 Id~~~k~V~~~~g~~~~yD~LVlATGs~p-~~p~ipG~~~~~v~~~rt~~d~~~-i---~--~~~~~~k~vvVVGgG~~G 152 (785)
T TIGR02374 80 IDTDQKQVITDAGRTLSYDKLILATGSYP-FILPIPGADKKGVYVFRTIEDLDA-I---M--AMAQRFKKAAVIGGGLLG 152 (785)
T ss_pred EECCCCEEEECCCcEeeCCEEEECCCCCc-CCCCCCCCCCCCEEEeCCHHHHHH-H---H--HHhhcCCeEEEECCCHHH
Confidence 22 333333 348999999999988 578899988888887655431100 0 0 111246899999999999
Q ss_pred HHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhcc
Q psy4525 165 MDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASAT 244 (388)
Q Consensus 165 ~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~ 244 (388)
+|+|..|. +.+ .+|+++.+.+.+.....+++..
T Consensus 153 lE~A~~L~--------------------~~G-~~Vtvv~~~~~ll~~~ld~~~~-------------------------- 185 (785)
T TIGR02374 153 LEAAVGLQ--------------------NLG-MDVSVIHHAPGLMAKQLDQTAG-------------------------- 185 (785)
T ss_pred HHHHHHHH--------------------hcC-CeEEEEccCCchhhhhcCHHHH--------------------------
Confidence 99999886 233 4799999887653321111111
Q ss_pred ccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCC
Q psy4525 245 LARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQS 324 (388)
Q Consensus 245 l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p 324 (388)
..+.+.+ .+.||+++++..++++.. ++.+..+.+ .+++++++|+||+|+|++|
T Consensus 186 -----~~l~~~l------------~~~GV~v~~~~~v~~i~~--~~~~~~v~~--------~dG~~i~~D~Vi~a~G~~P 238 (785)
T TIGR02374 186 -----RLLQREL------------EQKGLTFLLEKDTVEIVG--ATKADRIRF--------KDGSSLEADLIVMAAGIRP 238 (785)
T ss_pred -----HHHHHHH------------HHcCCEEEeCCceEEEEc--CCceEEEEE--------CCCCEEEcCEEEECCCCCc
Confidence 1122222 267999999999999974 345666655 3446899999999999999
Q ss_pred ccCC---CCCcccCCCccccCCCC
Q psy4525 325 RCVD---SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 325 ~~~~---~~l~~~~~~gi~l~~~~ 345 (388)
|... .+++.+ +|+++|+..
T Consensus 239 n~~la~~~gl~~~--ggI~Vd~~~ 260 (785)
T TIGR02374 239 NDELAVSAGIKVN--RGIIVNDSM 260 (785)
T ss_pred CcHHHHhcCCccC--CCEEECCCc
Confidence 9842 455554 788887654
|
|
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.9e-24 Score=214.69 Aligned_cols=254 Identities=15% Similarity=0.145 Sum_probs=161.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCc---------------------------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHP--------------------------- 63 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~--------------------------- 63 (388)
..+||+||||||||++||..+++ .|.+|+|||+. .+||.| +.||.|...
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~--~G~~v~lie~~-~~GG~c~n~gciPsk~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 173 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVE--QGARVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTI 173 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHh--CCCeEEEEecC-cceeeccccCccccHHHHHHHHHHHHHhcccccCCccCCCCcc
Confidence 35899999999999999999999 89999999997 789887 556665321
Q ss_pred chhHHHHH------------HHHhhcCC-CcEEEceEEEEE-----Eeeeccc---ccccCEEEEeeCCCCCCCCCCCCC
Q psy4525 64 EVKNVINT------------FTKTGDNP-RVNFYGNICLGQ-----DISLGDL---TNAYHAVVLTYGADNDKKLNIPGE 122 (388)
Q Consensus 64 ~~~~~~~~------------~~~~~~~~-~i~~~~~~~v~~-----~~~~~~~---~~~yd~lvlAtG~~~~~~~~i~g~ 122 (388)
..+.+.++ +...+.+. +++++.+..... .+...+. ...||+||||||+.+ +.|++||.
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p-~~p~i~g~ 252 (561)
T PRK13748 174 DRSRLLAQQQARVDELRHAKYEGILDGNPAITVLHGEARFKDDQTLIVRLNDGGERVVAFDRCLIATGASP-AVPPIPGL 252 (561)
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHhccCCeEEEEEEEEEecCCEEEEEeCCCceEEEEcCEEEEcCCCCC-CCCCCCCC
Confidence 01112211 11223343 677775543221 1222222 248999999999988 57888886
Q ss_pred CCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEE
Q psy4525 123 DGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLV 202 (388)
Q Consensus 123 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i 202 (388)
+...+++..+.. .....+++++|||+|++|+|+|..|. +. ..+|+++
T Consensus 253 ~~~~~~~~~~~~------------~~~~~~~~vvViGgG~ig~E~A~~l~--------------------~~-g~~Vtli 299 (561)
T PRK13748 253 KETPYWTSTEAL------------VSDTIPERLAVIGSSVVALELAQAFA--------------------RL-GSKVTIL 299 (561)
T ss_pred CccceEccHHHh------------hcccCCCeEEEECCCHHHHHHHHHHH--------------------Hc-CCEEEEE
Confidence 533333222211 11223689999999999999999876 23 3579999
Q ss_pred eecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcce
Q psy4525 203 GRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPT 282 (388)
Q Consensus 203 ~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~ 282 (388)
.|.. +...+ ++++. +.+.+.+. +.||++++++.++
T Consensus 300 ~~~~-~l~~~-d~~~~-------------------------------~~l~~~l~------------~~gI~i~~~~~v~ 334 (561)
T PRK13748 300 ARST-LFFRE-DPAIG-------------------------------EAVTAAFR------------AEGIEVLEHTQAS 334 (561)
T ss_pred ecCc-ccccc-CHHHH-------------------------------HHHHHHHH------------HCCCEEEcCCEEE
Confidence 9853 22221 12221 22222222 6799999999999
Q ss_pred eeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCCCCeecchhhHHh
Q psy4525 283 EFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEGVPVVTWEGWKAI 357 (388)
Q Consensus 283 ~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~~~~~~~~~w~~~ 357 (388)
++..++ +.+ .+. +.++ ++++|.||+|+|++||+.. .++.+++++++.+|++.... ..+.|...
T Consensus 335 ~i~~~~-~~~-~v~--------~~~~-~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~~Ts-~~~IyA~G 402 (561)
T PRK13748 335 QVAHVD-GEF-VLT--------TGHG-ELRADKLLVATGRAPNTRSLALDAAGVTVNAQGAIVIDQGMRTS-VPHIYAAG 402 (561)
T ss_pred EEEecC-CEE-EEE--------ecCC-eEEeCEEEEccCCCcCCCCcCchhcCceECCCCCEeECCCcccC-CCCEEEee
Confidence 987543 322 222 1222 5999999999999999842 35667666668787654321 22444444
Q ss_pred HH
Q psy4525 358 DK 359 (388)
Q Consensus 358 ~~ 359 (388)
|+
T Consensus 403 D~ 404 (561)
T PRK13748 403 DC 404 (561)
T ss_pred ec
Confidence 43
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=6e-24 Score=210.03 Aligned_cols=264 Identities=13% Similarity=0.121 Sum_probs=167.0
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCC-----CcchhHHHHHHHHhhcCCCcEEEceEE
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPD-----HPEVKNVINTFTKTGDNPRVNFYGNIC 88 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~ 88 (388)
++|||||||+||+++|..|++..++.+|+|||+++.++- ...+. |. +....++.....+.+.+.+++++.+..
T Consensus 1 ~~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~ 78 (444)
T PRK09564 1 MKIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIVSF-GACGL-PYFVGGFFDDPNTMIARTPEEFIKSGIDVKTEHE 78 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCccee-ecCCC-ceEeccccCCHHHhhcCCHHHHHHCCCeEEecCE
Confidence 379999999999999999998545679999999976531 11111 11 122333444445556677898876654
Q ss_pred EEE------Eeeecc---c-ccc--cCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEE
Q psy4525 89 LGQ------DISLGD---L-TNA--YHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEAT 156 (388)
Q Consensus 89 v~~------~~~~~~---~-~~~--yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vv 156 (388)
+.. .+.+.+ . ... ||+||+|||+.+ +.+++||.+.+++++...+..... .........+++|+
T Consensus 79 V~~id~~~~~v~~~~~~~~~~~~~~yd~lviAtG~~~-~~~~i~g~~~~~v~~~~~~~~~~~----l~~~l~~~~~~~vv 153 (444)
T PRK09564 79 VVKVDAKNKTITVKNLKTGSIFNDTYDKLMIATGARP-IIPPIKNINLENVYTLKSMEDGLA----LKELLKDEEIKNIV 153 (444)
T ss_pred EEEEECCCCEEEEEECCCCCEEEecCCEEEECCCCCC-CCCCCCCcCCCCEEEECCHHHHHH----HHHHHhhcCCCEEE
Confidence 431 133322 1 224 999999999988 477899988788887665432111 00000112468999
Q ss_pred EEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccc
Q psy4525 157 ILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLC 236 (388)
Q Consensus 157 VIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~ 236 (388)
|||+|.+|+|+|..|. ..+ .+|+++.+.+.+.....++++.
T Consensus 154 VvGgG~~g~e~A~~l~--------------------~~g-~~Vtli~~~~~~l~~~~~~~~~------------------ 194 (444)
T PRK09564 154 IIGAGFIGLEAVEAAK--------------------HLG-KNVRIIQLEDRILPDSFDKEIT------------------ 194 (444)
T ss_pred EECCCHHHHHHHHHHH--------------------hcC-CcEEEEeCCcccCchhcCHHHH------------------
Confidence 9999999999999775 223 5799999887643321122221
Q ss_pred cchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceE
Q psy4525 237 GVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIA 316 (388)
Q Consensus 237 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~V 316 (388)
+.+.+.+. +.||++++++.++++.. ++.+..+.. + +.+++||.|
T Consensus 195 -------------~~l~~~l~------------~~gI~v~~~~~v~~i~~--~~~~~~v~~--------~-~~~i~~d~v 238 (444)
T PRK09564 195 -------------DVMEEELR------------ENGVELHLNEFVKSLIG--EDKVEGVVT--------D-KGEYEADVV 238 (444)
T ss_pred -------------HHHHHHHH------------HCCCEEEcCCEEEEEec--CCcEEEEEe--------C-CCEEEcCEE
Confidence 11222222 57899999999999964 344444432 2 236999999
Q ss_pred EEccccCCccC---CCCCcccCCCccccCCCCCCeecchhhHHhHHH
Q psy4525 317 FRSIGYQSRCV---DSDIPFNEKSCTVIPKEGVPVVTWEGWKAIDKE 360 (388)
Q Consensus 317 i~a~G~~p~~~---~~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~~ 360 (388)
|+|+|++||.. ..++.+++++++.+|+.... -..+.|...|+.
T Consensus 239 i~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~t-~~~~IyA~GD~~ 284 (444)
T PRK09564 239 IVATGVKPNTEFLEDTGLKTLKNGAIIVDEYGET-SIENIYAAGDCA 284 (444)
T ss_pred EECcCCCcCHHHHHhcCccccCCCCEEECCCccc-CCCCEEEeeeEE
Confidence 99999999863 24566666666888765432 123445544443
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-23 Score=207.94 Aligned_cols=243 Identities=19% Similarity=0.232 Sum_probs=159.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceee-C-C--CCCC--cchhHHHHHHHHhhcCCCcEEEc
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY-G-V--APDH--PEVKNVINTFTKTGDNPRVNFYG 85 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~-g-~--~p~~--~~~~~~~~~~~~~~~~~~i~~~~ 85 (388)
..+||+||||||||++||.+|++ .+++|+|||+. .+||.+.. . . .|.. ....++.+++.+++++++++++.
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar--~g~~V~liE~~-~~GG~~~~~~~i~~~pg~~~~~~~~l~~~l~~~~~~~gv~~~~ 79 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGR--AKLDTLIIEKD-DFGGQITITSEVVNYPGILNTTGPELMQEMRQQAQDFGVKFLQ 79 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHH--CCCCEEEEecC-CCCceEEeccccccCCCCcCCCHHHHHHHHHHHHHHcCCEEec
Confidence 34899999999999999999999 89999999996 67877642 1 1 1322 23467778888888888998864
Q ss_pred eEEEEEE-------eeecccccccCEEEEeeCCCCCCCCCCCCCC---CCCeeecccccccccCCCCccccCcCCCCCeE
Q psy4525 86 NICLGQD-------ISLGDLTNAYHAVVLTYGADNDKKLNIPGED---GKNIISARSFVGWYNGLPEDASLDLSLDCEEA 155 (388)
Q Consensus 86 ~~~v~~~-------~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v 155 (388)
......+ +...+....|++||+|||+.+ +.+++||.+ ..+++...... .....+++|
T Consensus 80 ~~V~~i~~~~~~~~V~~~~g~~~a~~lVlATGa~p-~~~~ipG~~~~~~~~v~~~~~~~------------~~~~~g~~V 146 (555)
T TIGR03143 80 AEVLDVDFDGDIKTIKTARGDYKTLAVLIATGASP-RKLGFPGEEEFTGRGVAYCATCD------------GEFFTGMDV 146 (555)
T ss_pred cEEEEEEecCCEEEEEecCCEEEEeEEEECCCCcc-CCCCCCCHHHhCCceEEEEeecC------------hhhcCCCEE
Confidence 4332221 222223346889999999987 578898853 12232211110 123458999
Q ss_pred EEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEeccccc
Q psy4525 156 TILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQL 235 (388)
Q Consensus 156 vVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~ 235 (388)
+|||||++|+|+|..|+ ....+|+++.|.+.+... ..
T Consensus 147 vVIGgG~~g~E~A~~L~---------------------~~g~~Vtli~~~~~~~~~---~~------------------- 183 (555)
T TIGR03143 147 FVIGGGFAAAEEAVFLT---------------------RYASKVTVIVREPDFTCA---KL------------------- 183 (555)
T ss_pred EEECCCHHHHHHHHHHH---------------------ccCCEEEEEEeCCccccC---HH-------------------
Confidence 99999999999999776 334589999998653111 00
Q ss_pred ccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEE--ec
Q psy4525 236 CGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELI--PS 313 (388)
Q Consensus 236 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l--~~ 313 (388)
+...+ ....||++++++.++++.+ ++.+..+.+.+. .+++..++ +|
T Consensus 184 ----------------~~~~~-----------~~~~gV~i~~~~~V~~i~~--~~~v~~v~~~~~---~~G~~~~~~~~~ 231 (555)
T TIGR03143 184 ----------------IAEKV-----------KNHPKIEVKFNTELKEATG--DDGLRYAKFVNN---VTGEITEYKAPK 231 (555)
T ss_pred ----------------HHHHH-----------HhCCCcEEEeCCEEEEEEc--CCcEEEEEEEEC---CCCCEEEEeccc
Confidence 00111 1146899999999999984 345554443211 12333333 47
Q ss_pred ce----EEEccccCCccCC--CCCcccCCCccccCCCC
Q psy4525 314 GI----AFRSIGYQSRCVD--SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 314 D~----Vi~a~G~~p~~~~--~~l~~~~~~gi~l~~~~ 345 (388)
|. ||+|+|++||+.. .++.+++++.+.+|+..
T Consensus 232 D~~~~~Vi~a~G~~Pn~~l~~~~l~l~~~G~I~vd~~~ 269 (555)
T TIGR03143 232 DAGTFGVFVFVGYAPSSELFKGVVELDKRGYIPTNEDM 269 (555)
T ss_pred cccceEEEEEeCCCCChhHHhhhcccCCCCeEEeCCcc
Confidence 76 9999999999852 34566655556666543
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-24 Score=206.11 Aligned_cols=250 Identities=11% Similarity=0.100 Sum_probs=154.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC-Cce--eeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF-GLV--RYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICL 89 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g-g~~--~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v 89 (388)
.++|||||||+||++||..|++.....+|+|+++++.+. ... ...+... ...........+++.+.+++++.++.+
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~~~~~~I~li~~e~~~~y~r~~l~~~~~~~-~~~~~~~~~~~~~~~~~~i~~~~g~~V 81 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQGFTGELHLFSDERHLPYERPPLSKSMLLE-DSPQLQQVLPANWWQENNVHLHSGVTI 81 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhhCCCCCEEEeCCCCCCCCCCCCCCHHHHCC-CCccccccCCHHHHHHCCCEEEcCCEE
Confidence 468999999999999999999954456899999886542 110 0000000 000000001123345578999887654
Q ss_pred -EE-----Eeeeccc-ccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCCh
Q psy4525 90 -GQ-----DISLGDL-TNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGN 162 (388)
Q Consensus 90 -~~-----~~~~~~~-~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~ 162 (388)
.. .+.+.+. ...||+||||||+.+ +.+++++...+++++.+++..... + . .....+++++|||+|+
T Consensus 82 ~~id~~~~~v~~~~g~~~~yd~LViATGs~~-~~~p~~~~~~~~v~~~~~~~da~~-l---~--~~~~~~~~vvViGgG~ 154 (396)
T PRK09754 82 KTLGRDTRELVLTNGESWHWDQLFIATGAAA-RPLPLLDALGERCFTLRHAGDAAR-L---R--EVLQPERSVVIVGAGT 154 (396)
T ss_pred EEEECCCCEEEECCCCEEEcCEEEEccCCCC-CCCCCCCcCCCCEEecCCHHHHHH-H---H--HHhhcCCeEEEECCCH
Confidence 22 2334433 348999999999998 466676666677776544331100 0 0 1122468999999999
Q ss_pred HHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhh
Q psy4525 163 VAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEAS 242 (388)
Q Consensus 163 sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~ 242 (388)
+|+|+|..|. +.+ .+||++.+.+.+.....++++.
T Consensus 155 ig~E~A~~l~--------------------~~g-~~Vtlv~~~~~~l~~~~~~~~~------------------------ 189 (396)
T PRK09754 155 IGLELAASAT--------------------QRR-CKVTVIELAATVMGRNAPPPVQ------------------------ 189 (396)
T ss_pred HHHHHHHHHH--------------------HcC-CeEEEEecCCcchhhhcCHHHH------------------------
Confidence 9999999875 233 4799999987653322222211
Q ss_pred ccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEcccc
Q psy4525 243 ATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
+.+.+.+. +.||+++++..++++.. ++.+ .+.+ .++++++||.||+|+|+
T Consensus 190 -------~~l~~~l~------------~~GV~i~~~~~V~~i~~--~~~~-~v~l--------~~g~~i~aD~Vv~a~G~ 239 (396)
T PRK09754 190 -------RYLLQRHQ------------QAGVRILLNNAIEHVVD--GEKV-ELTL--------QSGETLQADVVIYGIGI 239 (396)
T ss_pred -------HHHHHHHH------------HCCCEEEeCCeeEEEEc--CCEE-EEEE--------CCCCEEECCEEEECCCC
Confidence 11222222 57999999999999874 2222 2332 34567999999999999
Q ss_pred CCccCC-CCCcccCCCccccCCCC
Q psy4525 323 QSRCVD-SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 323 ~p~~~~-~~l~~~~~~gi~l~~~~ 345 (388)
+||+.. .+..+..++|+.+|+..
T Consensus 240 ~pn~~l~~~~gl~~~~gi~vd~~~ 263 (396)
T PRK09754 240 SANDQLAREANLDTANGIVIDEAC 263 (396)
T ss_pred ChhhHHHHhcCCCcCCCEEECCCC
Confidence 999732 12223334678877554
|
|
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-23 Score=205.28 Aligned_cols=240 Identities=15% Similarity=0.185 Sum_probs=155.6
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcc----------------------------h
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPE----------------------------V 65 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~----------------------------~ 65 (388)
+|+|||+||||++||..+++ .|.+|+|+|+.+ +||.| +.||.|.+.. .
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~--~g~~V~lie~~~-~GG~c~n~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~~~ 78 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQ--NGKNVTLIDEAD-LGGTCLNEGCMPTKSLLESAEVHDKVKKANHFGITLPNGSISIDW 78 (458)
T ss_pred eEEEECCCHHHHHHHHHHHh--CCCcEEEEECCc-ccccCCCCccccchHHHHHHHHHHHHHHHHhcCccccCCCCccCH
Confidence 79999999999999999999 899999999974 66665 6777763321 1
Q ss_pred hHHHH-----------HHHHhhcCCCcEEEceEEEEE-----Eeeeccc--ccccCEEEEeeCCCCCCCCCCCCCCCCCe
Q psy4525 66 KNVIN-----------TFTKTGDNPRVNFYGNICLGQ-----DISLGDL--TNAYHAVVLTYGADNDKKLNIPGEDGKNI 127 (388)
Q Consensus 66 ~~~~~-----------~~~~~~~~~~i~~~~~~~v~~-----~~~~~~~--~~~yd~lvlAtG~~~~~~~~i~g~~~~~v 127 (388)
..+.. .....+++.+++++.+..... .+..++. ...||+||||||+.+ +.+++++.+...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~~~~~~~~d~lviATGs~p-~~~p~~~~~~~~v 157 (458)
T PRK06912 79 KQMQARKSQIVTQLVQGIQYLMKKNKIKVIQGKASFETDHRVRVEYGDKEEVVDAEQFIIAAGSEP-TELPFAPFDGKWI 157 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEccCCEEEEeeCCCcEEEECCEEEEeCCCCC-CCCCCCCCCCCeE
Confidence 11111 122234556787766544211 1222222 247999999999988 4666777655556
Q ss_pred eecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 128 ISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
++..+... ....+++++|||+|++|+|+|..|. +.+ .+|+++.|.+.
T Consensus 158 ~~~~~~~~------------~~~~~~~vvIIGgG~iG~E~A~~l~--------------------~~g-~~Vtli~~~~~ 204 (458)
T PRK06912 158 INSKHAMS------------LPSIPSSLLIVGGGVIGCEFASIYS--------------------RLG-TKVTIVEMAPQ 204 (458)
T ss_pred EcchHHhC------------ccccCCcEEEECCCHHHHHHHHHHH--------------------HcC-CeEEEEecCCC
Confidence 65544331 1123579999999999999999775 233 47999999876
Q ss_pred ccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeC
Q psy4525 208 LQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLN 287 (388)
Q Consensus 208 ~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~ 287 (388)
+...+ ++++. +.+.+.+. +.||++++++.++++..+
T Consensus 205 ll~~~-d~e~~-------------------------------~~l~~~L~------------~~GI~i~~~~~V~~i~~~ 240 (458)
T PRK06912 205 LLPGE-DEDIA-------------------------------HILREKLE------------NDGVKIFTGAALKGLNSY 240 (458)
T ss_pred cCccc-cHHHH-------------------------------HHHHHHHH------------HCCCEEEECCEEEEEEEc
Confidence 54332 12221 12222222 579999999999999753
Q ss_pred CCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 288 DNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 288 ~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
+ .. +.+.. .++.++++||.||+|+|++||... .++.++. +|+.+|++.
T Consensus 241 ~--~~--v~~~~-----~g~~~~i~~D~vivA~G~~p~~~~l~l~~~gv~~~~-~gi~Vd~~~ 293 (458)
T PRK06912 241 K--KQ--ALFEY-----EGSIQEVNAEFVLVSVGRKPRVQQLNLEKAGVQFSN-KGISVNEHM 293 (458)
T ss_pred C--CE--EEEEE-----CCceEEEEeCEEEEecCCccCCCCCCchhcCceecC-CCEEeCCCe
Confidence 2 22 22211 233357999999999999999742 2344543 567777553
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-23 Score=204.36 Aligned_cols=243 Identities=17% Similarity=0.258 Sum_probs=152.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCC--------------------------cc
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDH--------------------------PE 64 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~--------------------------~~ 64 (388)
..+||+||||||||++||..|.+ .|.+|+|||+ ..+||.| +.||.|.+ ..
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~--~g~~v~lie~-~~~GG~~~~~gc~psk~l~~~~~~~~~~~~~~~~gi~~~~~~~~ 78 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAK--LGKKVALIEK-GPLGGTCLNVGCIPSKALIAAAEAFHEAKHAEEFGIHADGPKID 78 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHH--CCCeEEEEeC-CccccceeccceeeHHHHHHHHHHHHHHHHHHhcCCCcCCCccC
Confidence 34899999999999999999999 8999999999 5788877 45665532 11
Q ss_pred hhHHHHHHHH------------hhcCCCcEEEceEEEE---EEeeecccccccCEEEEeeCCCCCCCCCCCCCC---CCC
Q psy4525 65 VKNVINTFTK------------TGDNPRVNFYGNICLG---QDISLGDLTNAYHAVVLTYGADNDKKLNIPGED---GKN 126 (388)
Q Consensus 65 ~~~~~~~~~~------------~~~~~~i~~~~~~~v~---~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~---~~~ 126 (388)
.+++.++..+ .++..+++++.+.... ..+.++.....||+||+|||+. .|++||.. ..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~v~v~~~~~~~d~lIiATGs~---~p~ipg~~~~~~~~ 155 (460)
T PRK06292 79 FKKVMARVRRERDRFVGGVVEGLEKKPKIDKIKGTARFVDPNTVEVNGERIEAKNIVIATGSR---VPPIPGVWLILGDR 155 (460)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHhhCCCEEEEEEEEEccCCEEEECcEEEEeCEEEEeCCCC---CCCCCCCcccCCCc
Confidence 2222222221 2234466665443211 1233333335899999999987 23456642 233
Q ss_pred eeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecC
Q psy4525 127 IISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRG 206 (388)
Q Consensus 127 v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~ 206 (388)
+++..+.. .....+++++|||+|.+|+|+|..|. +.+ .+|+++.|.+
T Consensus 156 ~~~~~~~~------------~~~~~~k~v~VIGgG~~g~E~A~~l~--------------------~~g-~~Vtli~~~~ 202 (460)
T PRK06292 156 LLTSDDAF------------ELDKLPKSLAVIGGGVIGLELGQALS--------------------RLG-VKVTVFERGD 202 (460)
T ss_pred EECchHHh------------CccccCCeEEEECCCHHHHHHHHHHH--------------------HcC-CcEEEEecCC
Confidence 44333322 11224689999999999999999776 233 5799999987
Q ss_pred cccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeee
Q psy4525 207 ALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKL 286 (388)
Q Consensus 207 ~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~ 286 (388)
.+...+ ++++. +.+.+.+ .+. |+++++..++++..
T Consensus 203 ~~l~~~-d~~~~-------------------------------~~~~~~l------------~~~-I~i~~~~~v~~i~~ 237 (460)
T PRK06292 203 RILPLE-DPEVS-------------------------------KQAQKIL------------SKE-FKIKLGAKVTSVEK 237 (460)
T ss_pred CcCcch-hHHHH-------------------------------HHHHHHH------------hhc-cEEEcCCEEEEEEE
Confidence 653321 12211 1111222 246 99999999999975
Q ss_pred CCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 287 NDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 287 ~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
+++ ..+++.. ..++++++++|.|++|+|++||... .++.+++++.+.+|+..
T Consensus 238 ~~~---~~v~~~~----~~~~~~~i~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~g~i~vd~~~ 294 (460)
T PRK06292 238 SGD---EKVEELE----KGGKTETIEADYVLVATGRRPNTDGLGLENTGIELDERGRPVVDEHT 294 (460)
T ss_pred cCC---ceEEEEE----cCCceEEEEeCEEEEccCCccCCCCCCcHhhCCEecCCCcEeECCCc
Confidence 432 1222210 1345568999999999999999852 34556655556676554
|
|
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-23 Score=206.82 Aligned_cols=243 Identities=16% Similarity=0.139 Sum_probs=155.4
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcc-------------------------
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPE------------------------- 64 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~------------------------- 64 (388)
..++|++|||+||||+++|..+++ .|.+|+++|+.+.+||.| +.||.|....
T Consensus 14 ~~~~dvvvIG~G~aG~~~a~~~~~--~g~~v~~ie~~~~~GG~c~n~GciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~ 91 (479)
T PRK14727 14 KLQLHVAIIGSGSAAFAAAIKAAE--HGARVTIIEGADVIGGCCVNVGCVPSKILIRAAQLAHQQRSNPFDGVEAVAPSI 91 (479)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEEccCcceeEeccccccccHHHHHHHHHHHHHhhccccCcccCCCcc
Confidence 456899999999999999999999 899999999988899988 5576653210
Q ss_pred -hhHHH-------HH-----HHHhhcCC-CcEEEceEEEE-----EEeeeccc---ccccCEEEEeeCCCCCCCCCCCCC
Q psy4525 65 -VKNVI-------NT-----FTKTGDNP-RVNFYGNICLG-----QDISLGDL---TNAYHAVVLTYGADNDKKLNIPGE 122 (388)
Q Consensus 65 -~~~~~-------~~-----~~~~~~~~-~i~~~~~~~v~-----~~~~~~~~---~~~yd~lvlAtG~~~~~~~~i~g~ 122 (388)
...+. .. +...++.. +++++.+...- ..+...+. ...||+||||||+.+ +.|++||.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lViATGs~p-~~p~i~G~ 170 (479)
T PRK14727 92 DRGLLLHQQQARVEELRHAKYQSILDGNPALTLLKGYARFKDGNTLVVRLHDGGERVLAADRCLIATGSTP-TIPPIPGL 170 (479)
T ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHhhcCCeEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEecCCCC-CCCCCCCc
Confidence 01111 11 12223323 67766443221 11222232 247999999999988 57889986
Q ss_pred CCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEE
Q psy4525 123 DGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLV 202 (388)
Q Consensus 123 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i 202 (388)
+...+++..+.. .....+++++|||+|++|+|+|..|. +.+ .+|+++
T Consensus 171 ~~~~~~~~~~~l------------~~~~~~k~vvVIGgG~iG~E~A~~l~--------------------~~G-~~Vtlv 217 (479)
T PRK14727 171 MDTPYWTSTEAL------------FSDELPASLTVIGSSVVAAEIAQAYA--------------------RLG-SRVTIL 217 (479)
T ss_pred CccceecchHHh------------ccccCCCeEEEECCCHHHHHHHHHHH--------------------HcC-CEEEEE
Confidence 533333222211 11123589999999999999999775 233 579999
Q ss_pred eecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcce
Q psy4525 203 GRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPT 282 (388)
Q Consensus 203 ~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~ 282 (388)
.|. .+...+ ++++. +.+.+.+ .+.||++++++.++
T Consensus 218 ~~~-~~l~~~-d~~~~-------------------------------~~l~~~L------------~~~GV~i~~~~~V~ 252 (479)
T PRK14727 218 ARS-TLLFRE-DPLLG-------------------------------ETLTACF------------EKEGIEVLNNTQAS 252 (479)
T ss_pred EcC-CCCCcc-hHHHH-------------------------------HHHHHHH------------HhCCCEEEcCcEEE
Confidence 875 332221 12211 1222222 26799999999999
Q ss_pred eeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 283 EFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 283 ~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
++..++ +.+ .+. +.++ ++++|.||+|+|+.||+.. .++.+++++++.+|+..
T Consensus 253 ~i~~~~-~~~-~v~--------~~~g-~i~aD~VlvA~G~~pn~~~l~l~~~g~~~~~~G~i~Vd~~~ 309 (479)
T PRK14727 253 LVEHDD-NGF-VLT--------TGHG-ELRAEKLLISTGRHANTHDLNLEAVGVTTDTSGAIVVNPAM 309 (479)
T ss_pred EEEEeC-CEE-EEE--------EcCC-eEEeCEEEEccCCCCCccCCCchhhCceecCCCCEEECCCe
Confidence 987543 221 222 1222 5899999999999999852 34566666668887654
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-23 Score=205.56 Aligned_cols=247 Identities=13% Similarity=0.171 Sum_probs=155.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcC------CCCCCCce-eeCCCCCCcc---------------------
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEK------LPVPFGLV-RYGVAPDHPE--------------------- 64 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~------~~~~gg~~-~~g~~p~~~~--------------------- 64 (388)
.+|++||||||||++||.++++ .|.+|+|+|+ ...+||.| +++|.|....
T Consensus 4 ~~DviIIG~G~aG~~aA~~~~~--~g~~v~lie~~~~~~g~~~~Gg~c~n~gc~P~k~l~~~a~~~~~~~~~~~~~G~~~ 81 (475)
T PRK06327 4 QFDVVVIGAGPGGYVAAIRAAQ--LGLKVACIEAWKNPKGKPALGGTCLNVGCIPSKALLASSEEFENAGHHFADHGIHV 81 (475)
T ss_pred ceeEEEECCCHHHHHHHHHHHh--CCCeEEEEecccCCCCCCCcCCccccccccHHHHHHHHHHHHHHHHhhHHhcCccC
Confidence 5899999999999999999999 8999999998 34678877 6677654210
Q ss_pred ------hhH-----------HHHHHHHhhcCCCcEEEceEEEEE-------Eeeecc--c-ccccCEEEEeeCCCCCCCC
Q psy4525 65 ------VKN-----------VINTFTKTGDNPRVNFYGNICLGQ-------DISLGD--L-TNAYHAVVLTYGADNDKKL 117 (388)
Q Consensus 65 ------~~~-----------~~~~~~~~~~~~~i~~~~~~~v~~-------~~~~~~--~-~~~yd~lvlAtG~~~~~~~ 117 (388)
... +...+...++..+++++.+..... .+.+.. . ...||+||||||+.+. .+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~v~v~~~~~~~~~~d~lViATGs~p~-~~ 160 (475)
T PRK06327 82 DGVKIDVAKMIARKDKVVKKMTGGIEGLFKKNKITVLKGRGSFVGKTDAGYEIKVTGEDETVITAKHVIIATGSEPR-HL 160 (475)
T ss_pred CCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCCCCCEEEEecCCCeEEEeCEEEEeCCCCCC-CC
Confidence 000 111223344556787775543211 133321 2 3489999999999873 33
Q ss_pred CCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCc
Q psy4525 118 NIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIK 197 (388)
Q Consensus 118 ~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (388)
+..+.+...+++..+.. .....+++|+|||+|.+|+|+|..|. +. ..
T Consensus 161 p~~~~~~~~~~~~~~~~------------~~~~~~~~vvVvGgG~~g~E~A~~l~--------------------~~-g~ 207 (475)
T PRK06327 161 PGVPFDNKIILDNTGAL------------NFTEVPKKLAVIGAGVIGLELGSVWR--------------------RL-GA 207 (475)
T ss_pred CCCCCCCceEECcHHHh------------cccccCCeEEEECCCHHHHHHHHHHH--------------------Hc-CC
Confidence 22222223344333322 11123689999999999999999775 23 35
Q ss_pred EEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEe
Q psy4525 198 SVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIF 277 (388)
Q Consensus 198 ~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~ 277 (388)
+|+++.|++.+...+. +++. ..+.+.+. +.||++++
T Consensus 208 ~Vtli~~~~~~l~~~d-~~~~-------------------------------~~~~~~l~------------~~gi~i~~ 243 (475)
T PRK06327 208 EVTILEALPAFLAAAD-EQVA-------------------------------KEAAKAFT------------KQGLDIHL 243 (475)
T ss_pred eEEEEeCCCccCCcCC-HHHH-------------------------------HHHHHHHH------------HcCcEEEe
Confidence 7999999876543221 2221 11222222 57999999
Q ss_pred cCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 278 LRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 278 ~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
++.++++..++ +.+ .+.+.++ .++.+++++|.|++|+|++||+.. .++.+++++.+.+|+..
T Consensus 244 ~~~v~~i~~~~-~~v-~v~~~~~----~g~~~~i~~D~vl~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~ 310 (475)
T PRK06327 244 GVKIGEIKTGG-KGV-SVAYTDA----DGEAQTLEVDKLIVSIGRVPNTDGLGLEAVGLKLDERGFIPVDDHC 310 (475)
T ss_pred CcEEEEEEEcC-CEE-EEEEEeC----CCceeEEEcCEEEEccCCccCCCCCCcHhhCceeCCCCeEeECCCC
Confidence 99999998643 222 3443221 233367999999999999999752 34556665567777653
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-23 Score=205.31 Aligned_cols=242 Identities=17% Similarity=0.215 Sum_probs=155.2
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcch--hHHHHH-------------------
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPEV--KNVINT------------------- 71 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~~--~~~~~~------------------- 71 (388)
+||+||||||||+++|..|++ .|.+|+|||+ +.+||.| ++||.|..... .++...
T Consensus 2 yDvvVIG~G~aGl~aA~~la~--~G~~v~lie~-~~~GG~~~~~gc~Psk~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 78 (461)
T TIGR01350 2 YDVVVIGGGPGGYVAAIRAAQ--LGLKVALVEK-EYLGGTCLNVGCIPTKALLHSAEVYDEIKHAKDYGIEVENVSVDWE 78 (461)
T ss_pred ccEEEECCCHHHHHHHHHHHh--CCCeEEEEec-CCCCCceeecCccchHHHHHHhhHHHHHHHHHhcCCCCCCCcCCHH
Confidence 799999999999999999999 8999999999 7889987 66776653210 011111
Q ss_pred ----------------HHHhhcCCCcEEEceEEEEE-----Eeeecc--cccccCEEEEeeCCCCCCCCCCC-CCCCCCe
Q psy4525 72 ----------------FTKTGDNPRVNFYGNICLGQ-----DISLGD--LTNAYHAVVLTYGADNDKKLNIP-GEDGKNI 127 (388)
Q Consensus 72 ----------------~~~~~~~~~i~~~~~~~v~~-----~~~~~~--~~~~yd~lvlAtG~~~~~~~~i~-g~~~~~v 127 (388)
+...+++.+++++.+..... .+...+ ....||+||+|||+.+ +.+++| +.+...+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~d~lVlAtG~~p-~~~~~~~~~~~~~~ 157 (461)
T TIGR01350 79 KMQKRKNKVVKKLVGGVKGLLKKNKVTVIKGEAKFLDPGTVLVTGENGEETLTAKNIIIATGSRP-RSLPGPFDFDGEVV 157 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCEEEEecCCCcEEEEeCEEEEcCCCCC-CCCCCCCCCCCceE
Confidence 11233445677766554321 122222 1347999999999987 466665 3332234
Q ss_pred eecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 128 ISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
++..+.. .....+++++|||+|.+|+|+|..|. +.+ .+|+++.|.+.
T Consensus 158 ~~~~~~~------------~~~~~~~~vvViGgG~~g~e~A~~l~--------------------~~g-~~Vtli~~~~~ 204 (461)
T TIGR01350 158 ITSTGAL------------NLKEVPESLVIIGGGVIGIEFASIFA--------------------SLG-SKVTVIEMLDR 204 (461)
T ss_pred EcchHHh------------ccccCCCeEEEECCCHHHHHHHHHHH--------------------HcC-CcEEEEEcCCC
Confidence 4443332 11123689999999999999999775 233 47999999876
Q ss_pred ccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeC
Q psy4525 208 LQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLN 287 (388)
Q Consensus 208 ~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~ 287 (388)
+... .++++. +.+.+.+. +.||++++++.++++..+
T Consensus 205 ~l~~-~~~~~~-------------------------------~~~~~~l~------------~~gi~i~~~~~v~~i~~~ 240 (461)
T TIGR01350 205 ILPG-EDAEVS-------------------------------KVVAKALK------------KKGVKILTNTKVTAVEKN 240 (461)
T ss_pred CCCC-CCHHHH-------------------------------HHHHHHHH------------HcCCEEEeCCEEEEEEEe
Confidence 5322 111211 11222222 578999999999998764
Q ss_pred CCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCC
Q psy4525 288 DNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKE 344 (388)
Q Consensus 288 ~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~ 344 (388)
+ +.+. ++.. .++.+++++|.||+|+|++||... .++.++..+.+.+|+.
T Consensus 241 ~-~~v~-v~~~------~g~~~~i~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~ 294 (461)
T TIGR01350 241 D-DQVV-YENK------GGETETLTGEKVLVAVGRKPNTEGLGLENLGVELDERGRIVVDEY 294 (461)
T ss_pred C-CEEE-EEEe------CCcEEEEEeCEEEEecCCcccCCCCCcHhhCceECCCCcEeeCCC
Confidence 3 3332 3321 122357999999999999999851 3455565555777654
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-23 Score=204.30 Aligned_cols=244 Identities=14% Similarity=0.210 Sum_probs=152.1
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcch--hHHHHHHHHh--------------
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPEV--KNVINTFTKT-------------- 75 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~~--~~~~~~~~~~-------------- 75 (388)
.+||+||||||||++||..+++ .|.+|+|||+. .+||.+ +.||.|..... .++...+...
T Consensus 4 ~~DvvIIG~GpaG~~AA~~aa~--~G~~V~lie~~-~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~ 80 (466)
T PRK07818 4 HYDVVVLGAGPGGYVAAIRAAQ--LGLKTAVVEKK-YWGGVCLNVGCIPSKALLRNAELAHIFTKEAKTFGISGEVTFDY 80 (466)
T ss_pred cCCEEEECCCHHHHHHHHHHHh--CCCeEEEEecC-CCCCceecCCccccHHHHhhHHHHHHHHHHHHhcCCCcCcccCH
Confidence 4799999999999999999999 89999999986 667776 67887764321 1122221111
Q ss_pred ---------------------hcCCCcEEEceEEE--E-EEeee--ccc---ccccCEEEEeeCCCCCCCCCCCCCCC-C
Q psy4525 76 ---------------------GDNPRVNFYGNICL--G-QDISL--GDL---TNAYHAVVLTYGADNDKKLNIPGEDG-K 125 (388)
Q Consensus 76 ---------------------~~~~~i~~~~~~~v--~-~~~~~--~~~---~~~yd~lvlAtG~~~~~~~~i~g~~~-~ 125 (388)
++..+++.+.+... . ..+.+ .+. ...||+||||||+.+. . +||.+. .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p~-~--~pg~~~~~ 157 (466)
T PRK07818 81 GAAFDRSRKVAEGRVKGVHFLMKKNKITEIHGYGTFTDANTLEVDLNDGGTETVTFDNAIIATGSSTR-L--LPGTSLSE 157 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEcCCCEEEEEecCCCeeEEEcCEEEEeCCCCCC-C--CCCCCCCC
Confidence 11234444332211 1 11222 222 2489999999999874 3 255432 3
Q ss_pred CeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeec
Q psy4525 126 NIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRR 205 (388)
Q Consensus 126 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~ 205 (388)
.+++..+.. .....+++++|||+|.+|+|+|..|+ +.+ .+|+++.+.
T Consensus 158 ~v~~~~~~~------------~~~~~~~~vvVIGgG~ig~E~A~~l~--------------------~~G-~~Vtlv~~~ 204 (466)
T PRK07818 158 NVVTYEEQI------------LSRELPKSIVIAGAGAIGMEFAYVLK--------------------NYG-VDVTIVEFL 204 (466)
T ss_pred cEEchHHHh------------ccccCCCeEEEECCcHHHHHHHHHHH--------------------HcC-CeEEEEecC
Confidence 344333211 11123689999999999999999776 233 479999988
Q ss_pred CcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeee
Q psy4525 206 GALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFK 285 (388)
Q Consensus 206 ~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~ 285 (388)
+.+...+. +++. ..+.+.+. +.||++++++.++++.
T Consensus 205 ~~~l~~~d-~~~~-------------------------------~~l~~~l~------------~~gV~i~~~~~v~~i~ 240 (466)
T PRK07818 205 DRALPNED-AEVS-------------------------------KEIAKQYK------------KLGVKILTGTKVESID 240 (466)
T ss_pred CCcCCccC-HHHH-------------------------------HHHHHHHH------------HCCCEEEECCEEEEEE
Confidence 76543321 2211 12222222 6799999999999998
Q ss_pred eCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 286 LNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 286 ~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
.++ +. ..+.+.. ..++.+++++|.||+|+|++||+.. .++.++.++.+.+|+..
T Consensus 241 ~~~-~~-~~v~~~~----~~g~~~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~~~~g~i~vd~~~ 299 (466)
T PRK07818 241 DNG-SK-VTVTVSK----KDGKAQELEADKVLQAIGFAPRVEGYGLEKTGVALTDRGAIAIDDYM 299 (466)
T ss_pred EeC-Ce-EEEEEEe----cCCCeEEEEeCEEEECcCcccCCCCCCchhcCcEECCCCcEeeCCCc
Confidence 532 22 2333321 1233357999999999999999842 34556555557777553
|
|
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=202.09 Aligned_cols=244 Identities=14% Similarity=0.138 Sum_probs=155.7
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC--------CCCCce-eeCCCCCCcch------------------
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP--------VPFGLV-RYGVAPDHPEV------------------ 65 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~--------~~gg~~-~~g~~p~~~~~------------------ 65 (388)
.+||+|||+||+|+.+|..+++ .|.+|+++|+.. .+||.| +.||.|.....
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~--~G~~v~lie~~~~~~~~~~~~~GGtc~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~ 79 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAAD--YGAKVMLLDFVTPTPLGTRWGIGGTCVNVGCIPKKLMHQAALLGQALKDSRNYGWN 79 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCCCCCCcceeccccccccCcCchhHHHHHHHHHHHHhhhhhcCcc
Confidence 4799999999999999999999 899999999731 478887 67888754210
Q ss_pred ---------h-----------HHHHHHHHhhcCCCcEEEceEEEEE---Eeeec--cc---ccccCEEEEeeCCCCCCCC
Q psy4525 66 ---------K-----------NVINTFTKTGDNPRVNFYGNICLGQ---DISLG--DL---TNAYHAVVLTYGADNDKKL 117 (388)
Q Consensus 66 ---------~-----------~~~~~~~~~~~~~~i~~~~~~~v~~---~~~~~--~~---~~~yd~lvlAtG~~~~~~~ 117 (388)
. .+...+...++..+++++.+...-. .+.+. +. ...||+||||||+.+ +.|
T Consensus 80 ~~~~~~~d~~~~~~~~~~~v~~~~~~~~~~~~~~~v~~i~G~a~f~~~~~v~v~~~~g~~~~~~~d~lVIATGs~p-~~p 158 (484)
T TIGR01438 80 VEETVKHDWNRLSEAVQNHIGSLNWGYRVALREKKVNYENAYAEFVDKHRIKATNKKGKEKIYSAERFLIATGERP-RYP 158 (484)
T ss_pred cCCCcccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEeccCCCceEEEeCEEEEecCCCC-CCC
Confidence 0 0111223345667787775443211 12221 21 248999999999988 578
Q ss_pred CCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCc
Q psy4525 118 NIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIK 197 (388)
Q Consensus 118 ~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (388)
++||.+. ..++..++.. ....+++++|||+|++|+|+|..|+ +.+ .
T Consensus 159 ~ipG~~~-~~~~~~~~~~------------~~~~~~~vvIIGgG~iG~E~A~~l~--------------------~~G-~ 204 (484)
T TIGR01438 159 GIPGAKE-LCITSDDLFS------------LPYCPGKTLVVGASYVALECAGFLA--------------------GIG-L 204 (484)
T ss_pred CCCCccc-eeecHHHhhc------------ccccCCCEEEECCCHHHHHHHHHHH--------------------HhC-C
Confidence 8988642 2233333221 1123578999999999999999876 233 5
Q ss_pred EEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEe
Q psy4525 198 SVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIF 277 (388)
Q Consensus 198 ~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~ 277 (388)
+|+++.|. .+... .++++. ..+.+.|. +.||++++
T Consensus 205 ~Vtli~~~-~~l~~-~d~~~~-------------------------------~~l~~~L~------------~~gV~i~~ 239 (484)
T TIGR01438 205 DVTVMVRS-ILLRG-FDQDCA-------------------------------NKVGEHME------------EHGVKFKR 239 (484)
T ss_pred cEEEEEec-ccccc-cCHHHH-------------------------------HHHHHHHH------------HcCCEEEe
Confidence 79999874 33222 222222 12222222 57999999
Q ss_pred cCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCC-CccccCCCC
Q psy4525 278 LRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEK-SCTVIPKEG 345 (388)
Q Consensus 278 ~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~-~gi~l~~~~ 345 (388)
+..++++...+ +. ..+++.++ ++.+++++|.|++|+|++||+.. .++.+++. +++.+|+..
T Consensus 240 ~~~v~~v~~~~-~~-~~v~~~~~-----~~~~~i~~D~vl~a~G~~pn~~~l~l~~~gv~~~~~~G~I~Vd~~~ 306 (484)
T TIGR01438 240 QFVPIKVEQIE-AK-VKVTFTDS-----TNGIEEEYDTVLLAIGRDACTRKLNLENVGVKINKKTGKIPADEEE 306 (484)
T ss_pred CceEEEEEEcC-Ce-EEEEEecC-----CcceEEEeCEEEEEecCCcCCCcCCcccccceecCcCCeEecCCCc
Confidence 99999887543 22 23443221 11357999999999999999842 33445543 447776543
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >KOG0404|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.4e-23 Score=173.76 Aligned_cols=241 Identities=20% Similarity=0.312 Sum_probs=176.4
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC----CCCCceee--------CCCCCCcchhHHHHHHHHhhcCCCc
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP----VPFGLVRY--------GVAPDHPEVKNVINTFTKTGDNPRV 81 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~----~~gg~~~~--------g~~p~~~~~~~~~~~~~~~~~~~~i 81 (388)
.+|+|||+|||+..||.++.+ ..++.++||-.. .+||.+.. |+ |+.....++.+.++++..++|.
T Consensus 9 e~v~IiGSGPAa~tAAiYaar--aelkPllfEG~~~~~i~pGGQLtTTT~veNfPGF-Pdgi~G~~l~d~mrkqs~r~Gt 85 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAAR--AELKPLLFEGMMANGIAPGGQLTTTTDVENFPGF-PDGITGPELMDKMRKQSERFGT 85 (322)
T ss_pred eeEEEEccCchHHHHHHHHhh--cccCceEEeeeeccCcCCCceeeeeeccccCCCC-CcccccHHHHHHHHHHHHhhcc
Confidence 589999999999999999999 899999999542 35777732 33 4444678999999999999999
Q ss_pred EEEceEEEEEEee-------ecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCcccc---CcCCC
Q psy4525 82 NFYGNICLGQDIS-------LGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASL---DLSLD 151 (388)
Q Consensus 82 ~~~~~~~v~~~~~-------~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~---~~~~~ 151 (388)
+++..+.-..+++ .+......|.+|+|||+.. +.+.+||.. +-..|..+.+.|.-+ ...+.
T Consensus 86 ~i~tEtVskv~~sskpF~l~td~~~v~~~avI~atGAsA-kRl~~pg~g--------e~~fWqrGiSaCAVCDGaapifr 156 (322)
T KOG0404|consen 86 EIITETVSKVDLSSKPFKLWTDARPVTADAVILATGASA-KRLHLPGEG--------EGEFWQRGISACAVCDGAAPIFR 156 (322)
T ss_pred eeeeeehhhccccCCCeEEEecCCceeeeeEEEecccce-eeeecCCCC--------cchHHhcccchhhcccCcchhhc
Confidence 8887665332222 2223347899999999998 688888863 111233455555444 45578
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEec
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFR 231 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~ 231 (388)
+|..+|||||.+++|-|..|. .-+++|++++|++.+..+
T Consensus 157 nk~laVIGGGDsA~EEA~fLt---------------------kyaskVyii~Rrd~fRAs-------------------- 195 (322)
T KOG0404|consen 157 NKPLAVIGGGDSAMEEALFLT---------------------KYASKVYIIHRRDHFRAS-------------------- 195 (322)
T ss_pred CCeeEEEcCcHHHHHHHHHHH---------------------hhccEEEEEEEhhhhhHH--------------------
Confidence 999999999999999999886 445789999999865432
Q ss_pred ccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEE
Q psy4525 232 NEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELI 311 (388)
Q Consensus 232 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l 311 (388)
..|+... ....+|++++++...+..++ .+.+..+.+.+ +.+++...+
T Consensus 196 ----------------------~~Mq~ra-------~~npnI~v~~nt~~~ea~gd-~~~l~~l~ikn---~~tge~~dl 242 (322)
T KOG0404|consen 196 ----------------------KIMQQRA-------EKNPNIEVLYNTVAVEALGD-GKLLNGLRIKN---VKTGEETDL 242 (322)
T ss_pred ----------------------HHHHHHH-------hcCCCeEEEechhhhhhccC-cccccceEEEe---cccCccccc
Confidence 1111111 23578999999999999875 36677777754 357888899
Q ss_pred ecceEEEccccCCccC--CCCCcccCCCcccc
Q psy4525 312 PSGIAFRSIGYQSRCV--DSDIPFNEKSCTVI 341 (388)
Q Consensus 312 ~~D~Vi~a~G~~p~~~--~~~l~~~~~~gi~l 341 (388)
+++-+++++|..|++. ...+.+|. .|.++
T Consensus 243 ~v~GlFf~IGH~Pat~~l~gqve~d~-~GYi~ 273 (322)
T KOG0404|consen 243 PVSGLFFAIGHSPATKFLKGQVELDE-DGYIV 273 (322)
T ss_pred ccceeEEEecCCchhhHhcCceeecc-CceEE
Confidence 9999999999999984 23455554 34443
|
|
| >KOG0399|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-23 Score=210.91 Aligned_cols=156 Identities=28% Similarity=0.429 Sum_probs=134.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
+..++|+|||+|||||+||-.|-+ .|..|+++||.+.+||++.||+ |.....+.+.++..+.+.+.||+|..|+.++
T Consensus 1783 rtg~~vaiigsgpaglaaadqlnk--~gh~v~vyer~dr~ggll~ygi-pnmkldk~vv~rrv~ll~~egi~f~tn~eig 1859 (2142)
T KOG0399|consen 1783 RTGKRVAIIGSGPAGLAAADQLNK--AGHTVTVYERSDRVGGLLMYGI-PNMKLDKFVVQRRVDLLEQEGIRFVTNTEIG 1859 (2142)
T ss_pred ccCcEEEEEccCchhhhHHHHHhh--cCcEEEEEEecCCcCceeeecC-CccchhHHHHHHHHHHHHhhCceEEeecccc
Confidence 457999999999999999999999 9999999999999999999999 8888888899999999999999999999999
Q ss_pred EEeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeeccccccccc-CCCC--ccccCcCCCCCeEEEEcCChHHHHH
Q psy4525 91 QDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYN-GLPE--DASLDLSLDCEEATILGQGNVAMDV 167 (388)
Q Consensus 91 ~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~-~~~~--~~~~~~~~~~~~vvVIGgG~sg~e~ 167 (388)
+++..+.....+|++|+|+|++.+|.+++||.+..+|.-+-+|+..-. .+-+ ..-.....++|+|+|||||.+|-|+
T Consensus 1860 k~vs~d~l~~~~daiv~a~gst~prdlpv~grd~kgv~fame~l~~ntk~lld~~~d~~~~~~~gkkvivigggdtg~dc 1939 (2142)
T KOG0399|consen 1860 KHVSLDELKKENDAIVLATGSTTPRDLPVPGRDLKGVHFAMEFLEKNTKSLLDSVLDGNYISAKGKKVIVIGGGDTGTDC 1939 (2142)
T ss_pred ccccHHHHhhccCeEEEEeCCCCCcCCCCCCccccccHHHHHHHHHhHHhhhccccccceeccCCCeEEEECCCCccccc
Confidence 999998888899999999999988999999999999977777763311 1111 1111334568999999999999998
Q ss_pred HH
Q psy4525 168 AR 169 (388)
Q Consensus 168 a~ 169 (388)
..
T Consensus 1940 ig 1941 (2142)
T KOG0399|consen 1940 IG 1941 (2142)
T ss_pred cc
Confidence 77
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-23 Score=205.27 Aligned_cols=265 Identities=14% Similarity=0.147 Sum_probs=160.8
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC-ceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG-LVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICL 89 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg-~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v 89 (388)
..+++|||||||+||+.+|..|.+ .+.+|+|||+++.+.- .+.+.........+++...+...+...+++++.+...
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~--~~~~ItlI~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~V~ 85 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDP--KKYNITVISPRNHMLFTPLLPQTTTGTLEFRSICEPVRPALAKLPNRYLRAVVY 85 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCc--CCCeEEEEcCCCCcchhhhHHHhcccCCChHHhHHHHHHHhccCCeEEEEEEEE
Confidence 456899999999999999999976 6899999999876421 1111111112234556656677777778888776554
Q ss_pred EEE-----eee----------ccc-ccccCEEEEeeCCCCCCCCCCCCCCCCCeeeccccccccc---CCCCc---c---
Q psy4525 90 GQD-----ISL----------GDL-TNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYN---GLPED---A--- 144 (388)
Q Consensus 90 ~~~-----~~~----------~~~-~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~---~~~~~---~--- 144 (388)
..+ +.+ .+. ...||+||||||+.+ ..+++||... +++....+..... .+..+ .
T Consensus 86 ~Id~~~~~v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~~-~~~~ipG~~e-~~~~~~~~~~a~~~~~~l~~~~~~~~~~ 163 (424)
T PTZ00318 86 DVDFEEKRVKCGVVSKSNNANVNTFSVPYDKLVVAHGARP-NTFNIPGVEE-RAFFLKEVNHARGIRKRIVQCIERASLP 163 (424)
T ss_pred EEEcCCCEEEEecccccccccCCceEecCCEEEECCCccc-CCCCCCCHHH-cCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 432 333 122 348999999999998 4778888642 3332222221000 00000 0
Q ss_pred cc--CcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhc
Q psy4525 145 SL--DLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTK 222 (388)
Q Consensus 145 ~~--~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~ 222 (388)
.. ......++++|||||.+|+|+|..|+...... . ......+ ....+|+++++.+.+...+. ++++
T Consensus 164 ~~~~~~~~~~~~vvVvGgG~~GvE~A~~l~~~~~~~----~-~~~~~~~--~~~~~Vtlv~~~~~ll~~~~-~~~~---- 231 (424)
T PTZ00318 164 TTSVEERKRLLHFVVVGGGPTGVEFAAELADFFRDD----V-RNLNPEL--VEECKVTVLEAGSEVLGSFD-QALR---- 231 (424)
T ss_pred CCChHHHhccCEEEEECCCHHHHHHHHHHHHHHHHH----H-Hhhhhcc--cccCEEEEEcCCCcccccCC-HHHH----
Confidence 00 00112358999999999999999886100000 0 0000000 01357999999876543322 1221
Q ss_pred CCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCcc
Q psy4525 223 LPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQA 302 (388)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~ 302 (388)
+.+.+.|. +.||++++++.++++.. + .+.+
T Consensus 232 ---------------------------~~~~~~L~------------~~gV~v~~~~~v~~v~~---~---~v~~----- 261 (424)
T PTZ00318 232 ---------------------------KYGQRRLR------------RLGVDIRTKTAVKEVLD---K---EVVL----- 261 (424)
T ss_pred ---------------------------HHHHHHHH------------HCCCEEEeCCeEEEEeC---C---EEEE-----
Confidence 22223332 68999999999999863 2 2322
Q ss_pred ccCCceeEEecceEEEccccCCccCC--CCCcccCCCccccCCC
Q psy4525 303 LVTEDTELIPSGIAFRSIGYQSRCVD--SDIPFNEKSCTVIPKE 344 (388)
Q Consensus 303 ~~~~~~~~l~~D~Vi~a~G~~p~~~~--~~l~~~~~~gi~l~~~ 344 (388)
.+++++++|+|||++|++|+.+. .++++++++++.+|+.
T Consensus 262 ---~~g~~i~~d~vi~~~G~~~~~~~~~~~l~~~~~G~I~Vd~~ 302 (424)
T PTZ00318 262 ---KDGEVIPTGLVVWSTGVGPGPLTKQLKVDKTSRGRISVDDH 302 (424)
T ss_pred ---CCCCEEEccEEEEccCCCCcchhhhcCCcccCCCcEEeCCC
Confidence 34568999999999999998753 3456666677888765
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=200.67 Aligned_cols=240 Identities=13% Similarity=0.142 Sum_probs=152.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcc--------------------------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPE-------------------------- 64 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~-------------------------- 64 (388)
..+||+||||||||+++|..|++ .|.+|+|||+. .+||.| +.||.|....
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~--~g~~v~lie~~-~~GGtc~n~GciPsk~l~~~a~~~~~~~~~~~~~g~~~~~~~~ 81 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATE--RGARVTLIERG-TIGGTCVNIGCVPSKIMIRAAHIAHLRRESPFDDGLSAQAPVV 81 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHh--CCCcEEEEEcc-ccccceecCCccccHHHHHHHHHHHHHhhccccCCcccCCCcc
Confidence 45899999999999999999999 89999999986 688877 5576554310
Q ss_pred -hhHHHHHH------------HHhhcC-CCcEEEceEEEEE-----Eeeeccc---ccccCEEEEeeCCCCCCCCCCCCC
Q psy4525 65 -VKNVINTF------------TKTGDN-PRVNFYGNICLGQ-----DISLGDL---TNAYHAVVLTYGADNDKKLNIPGE 122 (388)
Q Consensus 65 -~~~~~~~~------------~~~~~~-~~i~~~~~~~v~~-----~~~~~~~---~~~yd~lvlAtG~~~~~~~~i~g~ 122 (388)
...+..+. ...+.. .+++++.+..... .+++.+. ...||+||||||+.+ +.|++||.
T Consensus 82 ~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lViATGs~p-~~p~i~G~ 160 (468)
T PRK14694 82 DRSALLAQQQARVEELRESKYQSILRENAAITVLNGEARFVDERTLTVTLNDGGEQTVHFDRAFIGTGARP-AEPPVPGL 160 (468)
T ss_pred CHHHHHHHHHHHHHHHhcccHHHHHhcCCCeEEEEEEEEEecCCEEEEEecCCCeEEEECCEEEEeCCCCC-CCCCCCCC
Confidence 11111111 111323 3677776654321 2333333 248999999999988 58889987
Q ss_pred CCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEE
Q psy4525 123 DGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLV 202 (388)
Q Consensus 123 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i 202 (388)
+...+++..+.. .....+++++|||+|++|+|+|..|. +.+ .+|+++
T Consensus 161 ~~~~~~~~~~~~------------~l~~~~~~vvViG~G~~G~E~A~~l~--------------------~~g-~~Vtlv 207 (468)
T PRK14694 161 AETPYLTSTSAL------------ELDHIPERLLVIGASVVALELAQAFA--------------------RLG-SRVTVL 207 (468)
T ss_pred CCCceEcchhhh------------chhcCCCeEEEECCCHHHHHHHHHHH--------------------HcC-CeEEEE
Confidence 643333332211 11123689999999999999999776 233 579999
Q ss_pred eecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcce
Q psy4525 203 GRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPT 282 (388)
Q Consensus 203 ~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~ 282 (388)
.+. .+...+ ++++. +.+.+.+. +.||+++++..+.
T Consensus 208 ~~~-~~l~~~-~~~~~-------------------------------~~l~~~l~------------~~GI~v~~~~~v~ 242 (468)
T PRK14694 208 ARS-RVLSQE-DPAVG-------------------------------EAIEAAFR------------REGIEVLKQTQAS 242 (468)
T ss_pred ECC-CCCCCC-CHHHH-------------------------------HHHHHHHH------------hCCCEEEeCCEEE
Confidence 864 322111 11211 12222222 6799999999999
Q ss_pred eeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 283 EFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 283 ~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
++..++ +. ..+. +++ .++++|.||+|+|.+||+.. .++.. .++.+.+|++.
T Consensus 243 ~i~~~~-~~-~~v~--------~~~-~~i~~D~vi~a~G~~pn~~~l~l~~~g~~~-~~G~i~vd~~~ 298 (468)
T PRK14694 243 EVDYNG-RE-FILE--------TNA-GTLRAEQLLVATGRTPNTENLNLESIGVET-ERGAIRIDEHL 298 (468)
T ss_pred EEEEcC-CE-EEEE--------ECC-CEEEeCEEEEccCCCCCcCCCCchhcCccc-CCCeEeeCCCc
Confidence 987543 22 2222 122 25999999999999999853 12333 23346676553
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-23 Score=205.38 Aligned_cols=243 Identities=14% Similarity=0.200 Sum_probs=152.2
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCc-----chhHHHHH-HHHhhcCCCcEEEceE
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHP-----EVKNVINT-FTKTGDNPRVNFYGNI 87 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~-----~~~~~~~~-~~~~~~~~~i~~~~~~ 87 (388)
++|||||||+||++||..|++..++.+|+|||+++.++ ..+++. |.+. ..++.... ...+.++.+++++.++
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~~-~~~~~l-p~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~~ 79 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMS-FANCAL-PYYIGEVVEDRKYALAYTPEKFYDRKQITVKTYH 79 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCcc-cccCCc-chhhcCccCCHHHcccCCHHHHHHhCCCEEEeCC
Confidence 48999999999999999999865689999999997654 222222 2221 11122211 1233455788887655
Q ss_pred EEEE-E-----eeeccc------ccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeE
Q psy4525 88 CLGQ-D-----ISLGDL------TNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEA 155 (388)
Q Consensus 88 ~v~~-~-----~~~~~~------~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v 155 (388)
.|.. + +.+.+. ...||+||||||+.+ +.++++ .+++++..++..... .........++++
T Consensus 80 ~V~~Id~~~~~v~~~~~~~~~~~~~~yd~lviAtGs~~-~~~~~~---~~~~~~~~~~~~~~~----l~~~l~~~~~~~v 151 (438)
T PRK13512 80 EVIAINDERQTVTVLNRKTNEQFEESYDKLILSPGASA-NSLGFE---SDITFTLRNLEDTDA----IDQFIKANQVDKA 151 (438)
T ss_pred EEEEEECCCCEEEEEECCCCcEEeeecCEEEECCCCCC-CCCCCC---CCCeEEecCHHHHHH----HHHHHhhcCCCEE
Confidence 5422 2 333221 237999999999988 355543 345665544331100 0000011236899
Q ss_pred EEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEeccccc
Q psy4525 156 TILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQL 235 (388)
Q Consensus 156 vVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~ 235 (388)
+|||+|.+|+|+|..|. +.+ .+|+++.+++.+...+. +++.
T Consensus 152 vViGgG~ig~E~A~~l~--------------------~~g-~~Vtli~~~~~l~~~~d-~~~~----------------- 192 (438)
T PRK13512 152 LVVGAGYISLEVLENLY--------------------ERG-LHPTLIHRSDKINKLMD-ADMN----------------- 192 (438)
T ss_pred EEECCCHHHHHHHHHHH--------------------hCC-CcEEEEecccccchhcC-HHHH-----------------
Confidence 99999999999999876 233 57999999876532211 1111
Q ss_pred ccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecce
Q psy4525 236 CGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGI 315 (388)
Q Consensus 236 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~ 315 (388)
+.+.+.+. +.||+++++..++++.. . .+.+ .+++.++||.
T Consensus 193 --------------~~l~~~l~------------~~gI~i~~~~~v~~i~~---~---~v~~--------~~g~~~~~D~ 232 (438)
T PRK13512 193 --------------QPILDELD------------KREIPYRLNEEIDAING---N---EVTF--------KSGKVEHYDM 232 (438)
T ss_pred --------------HHHHHHHH------------hcCCEEEECCeEEEEeC---C---EEEE--------CCCCEEEeCE
Confidence 12222222 67999999999999862 1 2333 2345789999
Q ss_pred EEEccccCCccC---CCCCcccCCCccccCCCC
Q psy4525 316 AFRSIGYQSRCV---DSDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 316 Vi~a~G~~p~~~---~~~l~~~~~~gi~l~~~~ 345 (388)
|++|+|++||+. ..++.+++++.+.+|+..
T Consensus 233 vl~a~G~~pn~~~l~~~gl~~~~~G~i~Vd~~~ 265 (438)
T PRK13512 233 IIEGVGTHPNSKFIESSNIKLDDKGFIPVNDKF 265 (438)
T ss_pred EEECcCCCcChHHHHhcCcccCCCCcEEECCCc
Confidence 999999999973 245666665557777653
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-22 Score=200.79 Aligned_cols=239 Identities=15% Similarity=0.212 Sum_probs=149.0
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC--------CCCCce-eeCCCCCCc--------------------
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP--------VPFGLV-RYGVAPDHP-------------------- 63 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~--------~~gg~~-~~g~~p~~~-------------------- 63 (388)
.+||+||||||||++||..+.+ .|.+|+|+|+.. .+||.| ++||.|...
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~--~G~~V~lie~~~~~~~~~~~~~GG~C~n~gciPsK~l~~~a~~~~~~~~~~~~~g~ 82 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAA--HGKKVALFDYVKPSTQGTKWGLGGTCVNVGCVPKKLMHYAANIGSIFHHDSQMYGW 82 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHh--CCCeEEEEeccCCCCccccccccceeccccccchHHHHHHHHHHHHHHhHHhcCCC
Confidence 5899999999999999999999 899999999631 378886 778877421
Q ss_pred ------chhHHHHHHHHhh-----------cCCCcEEEceEEEE---EEeeecc----cccccCEEEEeeCCCCCCCCCC
Q psy4525 64 ------EVKNVINTFTKTG-----------DNPRVNFYGNICLG---QDISLGD----LTNAYHAVVLTYGADNDKKLNI 119 (388)
Q Consensus 64 ------~~~~~~~~~~~~~-----------~~~~i~~~~~~~v~---~~~~~~~----~~~~yd~lvlAtG~~~~~~~~i 119 (388)
...++.++..... +..+++++.+...- ..+.+.+ ....||+||||||+.+..++++
T Consensus 83 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~i~g~a~~~~~~~v~v~~~~~~~~i~~d~lIIATGs~p~~p~~i 162 (499)
T PTZ00052 83 KTSSSFNWGKLVTTVQNHIRSLNFSYRTGLRSSKVEYINGLAKLKDEHTVSYGDNSQEETITAKYILIATGGRPSIPEDV 162 (499)
T ss_pred CCCCCcCHHHHHHHHHHHHHHhhHHHHHHhhhcCcEEEEEEEEEccCCEEEEeeCCCceEEECCEEEEecCCCCCCCCCC
Confidence 1123333333222 23455555432211 1122211 1248999999999998423358
Q ss_pred CCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEE
Q psy4525 120 PGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSV 199 (388)
Q Consensus 120 ~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V 199 (388)
||.+. ..++..++.. ....+++++|||+|++|+|+|..|+ ..+ .+|
T Consensus 163 ~G~~~-~~~~~~~~~~------------~~~~~~~vvIIGgG~iG~E~A~~l~--------------------~~G-~~V 208 (499)
T PTZ00052 163 PGAKE-YSITSDDIFS------------LSKDPGKTLIVGASYIGLETAGFLN--------------------ELG-FDV 208 (499)
T ss_pred CCccc-eeecHHHHhh------------hhcCCCeEEEECCCHHHHHHHHHHH--------------------HcC-CcE
Confidence 87542 1233333221 1123579999999999999999876 233 579
Q ss_pred EEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecC
Q psy4525 200 NLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLR 279 (388)
Q Consensus 200 ~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~ 279 (388)
|++.+. .+...+ ++++. +.+.+.+. +.||+++++.
T Consensus 209 tli~~~-~~l~~~-d~~~~-------------------------------~~l~~~l~------------~~GV~i~~~~ 243 (499)
T PTZ00052 209 TVAVRS-IPLRGF-DRQCS-------------------------------EKVVEYMK------------EQGTLFLEGV 243 (499)
T ss_pred EEEEcC-cccccC-CHHHH-------------------------------HHHHHHHH------------HcCCEEEcCC
Confidence 999874 322221 22221 22222222 5789999999
Q ss_pred cceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccC
Q psy4525 280 SPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIP 342 (388)
Q Consensus 280 ~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~ 342 (388)
.+.++...+ +. ..+.+ .+++++++|.|++|+|++||+.. .++.+++++.++++
T Consensus 244 ~v~~v~~~~-~~-~~v~~--------~~g~~i~~D~vl~a~G~~pn~~~l~l~~~g~~~~~~G~ii~~ 301 (499)
T PTZ00052 244 VPINIEKMD-DK-IKVLF--------SDGTTELFDTVLYATGRKPDIKGLNLNAIGVHVNKSNKIIAP 301 (499)
T ss_pred eEEEEEEcC-Ce-EEEEE--------CCCCEEEcCEEEEeeCCCCCccccCchhcCcEECCCCCEeeC
Confidence 999887543 22 23433 23457899999999999999852 23455554444444
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.7e-23 Score=197.39 Aligned_cols=251 Identities=15% Similarity=0.220 Sum_probs=156.0
Q ss_pred cEEEECccHHHHHHHHHHHhh-CCCCcEEEEcCCCCCC-CceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEEE
Q psy4525 15 NVCIVGSGPAGFYCAQQILKL-LPQSTVDIYEKLPVPF-GLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQD 92 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~-~~g~~v~lie~~~~~g-g~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~ 92 (388)
+|||||||+||+.+|..++++ .++.+|+|||+++... ..+..+.........++...+.+++++.+++++.+.....+
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~gv~~~~~~v~~id 80 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTTPYSGMLPGMIAGHYSLDEIRIDLRRLARQAGARFVIAEATGID 80 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCCcccchhhHHHheeCCHHHhcccHHHHHHhcCCEEEEEEEEEEe
Confidence 589999999999999999753 3678999999886632 11111110111234455556667777789998877654433
Q ss_pred -----eeeccc-ccccCEEEEeeCCCCCCCCCCCCCCCCCeeeccccccccc---CCCCccccCcCCCCCeEEEEcCChH
Q psy4525 93 -----ISLGDL-TNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYN---GLPEDASLDLSLDCEEATILGQGNV 163 (388)
Q Consensus 93 -----~~~~~~-~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~~vvVIGgG~s 163 (388)
+.+.+. ...||+||||||+.+ +.+++||. .++++...++..... ....+. .....+++++|||+|.+
T Consensus 81 ~~~~~V~~~~g~~~~yD~LviAtG~~~-~~~~i~g~-~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~vvVvG~G~~ 156 (364)
T TIGR03169 81 PDRRKVLLANRPPLSYDVLSLDVGSTT-PLSGVEGA-ADLAVPVKPIENFLARWEALLESA--DAPPGTKRLAVVGGGAA 156 (364)
T ss_pred cccCEEEECCCCcccccEEEEccCCCC-CCCCCCcc-cccccccCCHHHHHHHHHHHHHHH--hcCCCCceEEEECCCHH
Confidence 344444 348999999999998 47888884 344544333211100 000000 00123579999999999
Q ss_pred HHHHHHHhccCCcccccccCchhHHHhhhcCCC-cEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhh
Q psy4525 164 AMDVARILLSPVDQLKSTDITEHSLEKLSTSRI-KSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEAS 242 (388)
Q Consensus 164 g~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~ 242 (388)
|+|+|..|. ..+++.+. .+|+++ +.+.+...+. +++
T Consensus 157 g~E~A~~l~----------------~~~~~~g~~~~V~li-~~~~~l~~~~-~~~------------------------- 193 (364)
T TIGR03169 157 GVEIALALR----------------RRLPKRGLRGQVTLI-AGASLLPGFP-AKV------------------------- 193 (364)
T ss_pred HHHHHHHHH----------------HHHHhcCCCceEEEE-eCCcccccCC-HHH-------------------------
Confidence 999999886 11112232 479998 4443322211 111
Q ss_pred ccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEcccc
Q psy4525 243 ATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
...+.+.+. +.||++++++.++++.. + .+. +.+++++++|.||+|+|.
T Consensus 194 ------~~~~~~~l~------------~~gV~v~~~~~v~~i~~---~---~v~--------~~~g~~i~~D~vi~a~G~ 241 (364)
T TIGR03169 194 ------RRLVLRLLA------------RRGIEVHEGAPVTRGPD---G---ALI--------LADGRTLPADAILWATGA 241 (364)
T ss_pred ------HHHHHHHHH------------HCCCEEEeCCeeEEEcC---C---eEE--------eCCCCEEecCEEEEccCC
Confidence 122222222 67999999999998852 2 233 244568999999999999
Q ss_pred CCccCC--CCCcccCCCccccCCC
Q psy4525 323 QSRCVD--SDIPFNEKSCTVIPKE 344 (388)
Q Consensus 323 ~p~~~~--~~l~~~~~~gi~l~~~ 344 (388)
+|++.. .++.++..+++.+|+.
T Consensus 242 ~p~~~l~~~gl~~~~~g~i~vd~~ 265 (364)
T TIGR03169 242 RAPPWLAESGLPLDEDGFLRVDPT 265 (364)
T ss_pred ChhhHHHHcCCCcCCCCeEEECCc
Confidence 998742 4566766667777654
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.5e-22 Score=200.39 Aligned_cols=253 Identities=12% Similarity=0.083 Sum_probs=156.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC-CCCCCce-eeCCCCCCcchh------------------------
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL-PVPFGLV-RYGVAPDHPEVK------------------------ 66 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~-~~~gg~~-~~g~~p~~~~~~------------------------ 66 (388)
.+||+|||+||+|+.+|..+.+ .|.+|+|||+. +.+||.| ++||.|......
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~--~G~kV~lie~~~~~lGGtCvn~GCiPsK~l~~~a~~~~~~~~~~~~~~~Gi~~~~~ 193 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAME--RGLKVIIFTGDDDSIGGTCVNVGCIPSKALLYATGKYRELKNLAKLYTYGIYTNAF 193 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCccccceeEeCCcchHHHHHHHHHHHHHHhccccccCCeeeccc
Confidence 5799999999999999999999 89999999974 3688887 778887542100
Q ss_pred -----------------------HHHH-----------HHHHhhcCCC-------cEEEceEE-E-E-EEeee--ccccc
Q psy4525 67 -----------------------NVIN-----------TFTKTGDNPR-------VNFYGNIC-L-G-QDISL--GDLTN 100 (388)
Q Consensus 67 -----------------------~~~~-----------~~~~~~~~~~-------i~~~~~~~-v-~-~~~~~--~~~~~ 100 (388)
.+.+ .+...+++.+ +++..+.. + . ..+.+ +....
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~v~vi~G~a~f~~~~~v~v~~~g~~i 273 (659)
T PTZ00153 194 KNGKNDPVERNQLVADTVQIDITKLKEYTQSVIDKLRGGIENGLKSKKFCKNSEHVQVIYERGHIVDKNTIKSEKSGKEF 273 (659)
T ss_pred cccccccccccccccccCccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCceEEEEeEEEEecCCeEEEccCCEEE
Confidence 0011 1111222222 44443322 1 1 11222 12234
Q ss_pred ccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCccccc
Q psy4525 101 AYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKS 180 (388)
Q Consensus 101 ~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~ 180 (388)
.||+||||||+.| +.|++++.+.+++++..+.... ...+++++|||+|++|+|+|..|.
T Consensus 274 ~ad~lIIATGS~P-~~P~~~~~~~~~V~ts~d~~~l------------~~lpk~VvIVGgG~iGvE~A~~l~-------- 332 (659)
T PTZ00153 274 KVKNIIIATGSTP-NIPDNIEVDQKSVFTSDTAVKL------------EGLQNYMGIVGMGIIGLEFMDIYT-------- 332 (659)
T ss_pred ECCEEEEcCCCCC-CCCCCCCCCCCcEEehHHhhhh------------hhcCCceEEECCCHHHHHHHHHHH--------
Confidence 8999999999988 4666666555667776554421 112679999999999999999775
Q ss_pred ccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhC
Q psy4525 181 TDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTS 260 (388)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 260 (388)
....+||++.+.+.+...+. +++.+ .+...+
T Consensus 333 -------------~~G~eVTLIe~~~~ll~~~d-~eis~-------------------------------~l~~~l---- 363 (659)
T PTZ00153 333 -------------ALGSEVVSFEYSPQLLPLLD-ADVAK-------------------------------YFERVF---- 363 (659)
T ss_pred -------------hCCCeEEEEeccCcccccCC-HHHHH-------------------------------HHHHHH----
Confidence 22357999999887644322 22211 111111
Q ss_pred CCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCc-----c--ccCCceeEEecceEEEccccCCccCC-----
Q psy4525 261 NPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQ-----A--LVTEDTELIPSGIAFRSIGYQSRCVD----- 328 (388)
Q Consensus 261 ~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~-----~--~~~~~~~~l~~D~Vi~a~G~~p~~~~----- 328 (388)
..+.||+++++..++++..++++....+.+.+.. . ....+.+++++|.|++|+|++||+..
T Consensus 364 -------l~~~GV~I~~~~~V~~I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pnt~~L~l~~ 436 (659)
T PTZ00153 364 -------LKSKPVRVHLNTLIEYVRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPNTNNLGLDK 436 (659)
T ss_pred -------hhcCCcEEEcCCEEEEEEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccCCccCCchh
Confidence 1257899999999999986433322233322100 0 00012247999999999999999853
Q ss_pred CCCcccCCCccccCCCC
Q psy4525 329 SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 329 ~~l~~~~~~gi~l~~~~ 345 (388)
.++..+ ++.|.+|++.
T Consensus 437 ~gi~~~-~G~I~VDe~l 452 (659)
T PTZ00153 437 LKIQMK-RGFVSVDEHL 452 (659)
T ss_pred cCCccc-CCEEeECCCC
Confidence 123343 3446776553
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=99.89 E-value=5e-22 Score=196.15 Aligned_cols=239 Identities=15% Similarity=0.207 Sum_probs=149.1
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcc--------------------------h
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPE--------------------------V 65 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~--------------------------~ 65 (388)
.+|++|||+||+|+.+|. +. .|.+|+++|+. .+||.| ++||.|.... .
T Consensus 2 ~yD~vvIG~G~~g~~aa~--~~--~g~~V~lie~~-~~GGtC~n~GCiPsK~l~~~a~~~~~~~~~~~~g~~~~~~~~d~ 76 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDP--RF--ADKRIAIVEKG-TFGGTCLNVGCIPTKMFVYAAEVAQSIGESARLGIDAEIDSVRW 76 (452)
T ss_pred CcCEEEECCCHHHHHHHH--HH--CCCeEEEEeCC-CCCCeeeccCccchHHHHHHHHHHHHHHHhhccCeeCCCCccCH
Confidence 489999999999998853 44 69999999985 678887 7788875410 1
Q ss_pred hHHHHH--------HH----Hhh---cCCCcEEEceEEEEE---Eeeeccc-ccccCEEEEeeCCCCCCCCCCCCCCCCC
Q psy4525 66 KNVINT--------FT----KTG---DNPRVNFYGNICLGQ---DISLGDL-TNAYHAVVLTYGADNDKKLNIPGEDGKN 126 (388)
Q Consensus 66 ~~~~~~--------~~----~~~---~~~~i~~~~~~~v~~---~~~~~~~-~~~yd~lvlAtG~~~~~~~~i~g~~~~~ 126 (388)
..+..+ +. ... ++.+++++.+...-. .+.+.+. ...||+||||||+.+. .|++.+.....
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~V~~~~g~~~~~d~lIiATGs~p~-~p~~~~~~~~~ 155 (452)
T TIGR03452 77 PDIVSRVFGDRIDPIAAGGEDYRRGDETPNIDVYDGHARFVGPRTLRTGDGEEITGDQIVIAAGSRPY-IPPAIADSGVR 155 (452)
T ss_pred HHHHHHhhhhHhHHHhccchHhhhhcccCCeEEEEEEEEEecCCEEEECCCcEEEeCEEEEEECCCCC-CCCCCCCCCCE
Confidence 111111 10 111 225777776544321 2444333 3489999999999884 55433322112
Q ss_pred eeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecC
Q psy4525 127 IISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRG 206 (388)
Q Consensus 127 v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~ 206 (388)
+.+..+... ....+++++|||+|++|+|+|..|. ..+ .+|+++.+.+
T Consensus 156 ~~~~~~~~~------------l~~~~k~vvVIGgG~ig~E~A~~l~--------------------~~G-~~Vtli~~~~ 202 (452)
T TIGR03452 156 YHTNEDIMR------------LPELPESLVIVGGGYIAAEFAHVFS--------------------ALG-TRVTIVNRST 202 (452)
T ss_pred EEcHHHHHh------------hhhcCCcEEEECCCHHHHHHHHHHH--------------------hCC-CcEEEEEccC
Confidence 333333221 1113689999999999999999776 233 5799999887
Q ss_pred cccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeee
Q psy4525 207 ALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKL 286 (388)
Q Consensus 207 ~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~ 286 (388)
.+...+ ++++. ..+.+.+ ..+|+++++..++++..
T Consensus 203 ~ll~~~-d~~~~-------------------------------~~l~~~~-------------~~gI~i~~~~~V~~i~~ 237 (452)
T TIGR03452 203 KLLRHL-DEDIS-------------------------------DRFTEIA-------------KKKWDIRLGRNVTAVEQ 237 (452)
T ss_pred cccccc-CHHHH-------------------------------HHHHHHH-------------hcCCEEEeCCEEEEEEE
Confidence 643221 11211 1111111 35799999999999986
Q ss_pred CCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 287 NDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 287 ~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
++ +.+ .+.+ .+++++++|.|++|+|++||+.. .++.+++++.+.+|+..
T Consensus 238 ~~-~~v-~v~~--------~~g~~i~~D~vl~a~G~~pn~~~l~~~~~gl~~~~~G~i~vd~~~ 291 (452)
T TIGR03452 238 DG-DGV-TLTL--------DDGSTVTADVLLVATGRVPNGDLLDAEAAGVEVDEDGRIKVDEYG 291 (452)
T ss_pred cC-CeE-EEEE--------cCCCEEEcCEEEEeeccCcCCCCcCchhcCeeECCCCcEeeCCCc
Confidence 43 222 2332 23457999999999999999842 34566655557777654
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >KOG1336|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=9e-22 Score=185.39 Aligned_cols=250 Identities=16% Similarity=0.203 Sum_probs=178.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC-CCceeeCCCCCCc--chhHHHHHHHHhhcCCCcEEEceEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP-FGLVRYGVAPDHP--EVKNVINTFTKTGDNPRVNFYGNIC 88 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~-gg~~~~g~~p~~~--~~~~~~~~~~~~~~~~~i~~~~~~~ 88 (388)
..+.++|||+|++|..|+..+++..+-.+++++-++..+ +... -+ |... ....+..+..++++..+++++.++.
T Consensus 73 ~ar~fvivGgG~~g~vaie~~r~~g~~~ri~l~~~~~~~pydr~--~L-s~~~~~~~~~~a~r~~e~Yke~gIe~~~~t~ 149 (478)
T KOG1336|consen 73 AARHFVIVGGGPGGAVAIETLRQVGFTERIALVKREYLLPYDRA--RL-SKFLLTVGEGLAKRTPEFYKEKGIELILGTS 149 (478)
T ss_pred ccceEEEEcCCchhhhhHhhHHhhCCCcceEEEeccccCcccch--hc-ccceeeccccccccChhhHhhcCceEEEcce
Confidence 357999999999999999999994334578888755432 2110 00 1111 2344555566677888999998887
Q ss_pred EEE-E-----eeeccccc-ccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCcccc-CcCCCCCeEEEEcC
Q psy4525 89 LGQ-D-----ISLGDLTN-AYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASL-DLSLDCEEATILGQ 160 (388)
Q Consensus 89 v~~-~-----~~~~~~~~-~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~vvVIGg 160 (388)
+.. + +..++++. .|++|+||||+.+ +.+++||.+.++++.-++.... ..+ .......+|+++|+
T Consensus 150 v~~~D~~~K~l~~~~Ge~~kys~LilATGs~~-~~l~~pG~~~~nv~~ireieda-------~~l~~~~~~~~~vV~vG~ 221 (478)
T KOG1336|consen 150 VVKADLASKTLVLGNGETLKYSKLIIATGSSA-KTLDIPGVELKNVFYLREIEDA-------NRLVAAIQLGGKVVCVGG 221 (478)
T ss_pred eEEeeccccEEEeCCCceeecceEEEeecCcc-ccCCCCCccccceeeeccHHHH-------HHHHHHhccCceEEEECc
Confidence 642 2 34444443 8999999999977 6899999998888877775521 111 12223678999999
Q ss_pred ChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchh
Q psy4525 161 GNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHE 240 (388)
Q Consensus 161 G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~ 240 (388)
|+.|+|+|..|. ....+||+|++.+.....+..
T Consensus 222 G~ig~Evaa~l~---------------------~~~~~VT~V~~e~~~~~~lf~-------------------------- 254 (478)
T KOG1336|consen 222 GFIGMEVAAALV---------------------SKAKSVTVVFPEPWLLPRLFG-------------------------- 254 (478)
T ss_pred hHHHHHHHHHHH---------------------hcCceEEEEccCccchhhhhh--------------------------
Confidence 999999999886 446789999998765443222
Q ss_pred hhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEcc
Q psy4525 241 ASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSI 320 (388)
Q Consensus 241 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~ 320 (388)
+..++++..++. ++||+++.++.+.++..+.+|.+..+.+ .++.+++||+||+.+
T Consensus 255 -----~~i~~~~~~y~e------------~kgVk~~~~t~~s~l~~~~~Gev~~V~l--------~dg~~l~adlvv~Gi 309 (478)
T KOG1336|consen 255 -----PSIGQFYEDYYE------------NKGVKFYLGTVVSSLEGNSDGEVSEVKL--------KDGKTLEADLVVVGI 309 (478)
T ss_pred -----HHHHHHHHHHHH------------hcCeEEEEecceeecccCCCCcEEEEEe--------ccCCEeccCeEEEee
Confidence 222344444443 7899999999999999887788888865 566799999999999
Q ss_pred ccCCccCC--CCCcccCCCccccCCC
Q psy4525 321 GYQSRCVD--SDIPFNEKSCTVIPKE 344 (388)
Q Consensus 321 G~~p~~~~--~~l~~~~~~gi~l~~~ 344 (388)
|.+||+.. .+..++.+++|.+|+.
T Consensus 310 G~~p~t~~~~~g~~~~~~G~i~V~~~ 335 (478)
T KOG1336|consen 310 GIKPNTSFLEKGILLDSKGGIKVDEF 335 (478)
T ss_pred ccccccccccccceecccCCEeehhc
Confidence 99999864 2455667777776643
|
|
| >KOG1335|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-21 Score=176.71 Aligned_cols=250 Identities=18% Similarity=0.246 Sum_probs=164.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcch-------------------------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPEV------------------------- 65 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~~------------------------- 65 (388)
..+||+|||+||+|..||....+ .|++.+++|++..+||.+ +.||.|+....
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQ--lGlkTacvEkr~~LGGTcLnvGcIPSKALL~nSh~yh~~q~~~~~~rGi~vs~~~ 115 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQ--LGLKTACVEKRGTLGGTCLNVGCIPSKALLNNSHLYHEAQHEDFASRGIDVSSVS 115 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHH--hcceeEEEeccCccCceeeeccccccHHHhhhhHHHHHHhhhHHHhcCcccccee
Confidence 56999999999999999999999 999999999999999987 67888865321
Q ss_pred --------------hHHHHHHHHhhcCCCcEEEceEE--EE-EEeee--cccc---cccCEEEEeeCCCCCCCCCCCCC-
Q psy4525 66 --------------KNVINTFTKTGDNPRVNFYGNIC--LG-QDISL--GDLT---NAYHAVVLTYGADNDKKLNIPGE- 122 (388)
Q Consensus 66 --------------~~~~~~~~~~~~~~~i~~~~~~~--v~-~~~~~--~~~~---~~yd~lvlAtG~~~~~~~~i~g~- 122 (388)
+++..-+...+++.++++..+.- .+ ..++. .+.. .....+|+||||... ++||.
T Consensus 116 ~dl~~~~~~k~~~vk~Lt~gi~~lfkknkV~~~kG~gsf~~p~~V~v~k~dg~~~ii~aKnIiiATGSeV~---~~PGI~ 192 (506)
T KOG1335|consen 116 LDLQAMMKAKDNAVKQLTGGIENLFKKNKVTYVKGFGSFLDPNKVSVKKIDGEDQIIKAKNIIIATGSEVT---PFPGIT 192 (506)
T ss_pred cCHHHHHHHHHHHHHHHhhHHHHHhhhcCeEEEeeeEeecCCceEEEeccCCCceEEeeeeEEEEeCCccC---CCCCeE
Confidence 11111222333444444432211 11 01221 1111 256789999998542 35564
Q ss_pred -CCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEE
Q psy4525 123 -DGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNL 201 (388)
Q Consensus 123 -~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 201 (388)
|-+.+.++...+ ....-+++++|||+|.+|+|++.... +-..+||+
T Consensus 193 IDekkIVSStgAL------------sL~~vPk~~~viG~G~IGLE~gsV~~---------------------rLGseVT~ 239 (506)
T KOG1335|consen 193 IDEKKIVSSTGAL------------SLKEVPKKLTVIGAGYIGLEMGSVWS---------------------RLGSEVTV 239 (506)
T ss_pred ecCceEEecCCcc------------chhhCcceEEEEcCceeeeehhhHHH---------------------hcCCeEEE
Confidence 334555554433 22334799999999999999998654 22357999
Q ss_pred EeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcc
Q psy4525 202 VGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSP 281 (388)
Q Consensus 202 i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~ 281 (388)
++-.+.+...+. .|++ +.+...|. .+|+.|++++.+
T Consensus 240 VEf~~~i~~~mD-~Eis-------------------------------k~~qr~L~------------kQgikF~l~tkv 275 (506)
T KOG1335|consen 240 VEFLDQIGGVMD-GEIS-------------------------------KAFQRVLQ------------KQGIKFKLGTKV 275 (506)
T ss_pred EEehhhhccccC-HHHH-------------------------------HHHHHHHH------------hcCceeEeccEE
Confidence 987665543322 2221 12222222 689999999999
Q ss_pred eeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCCCCCcccCCCccccCCCCCCeec
Q psy4525 282 TEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSCTVIPKEGVPVVT 350 (388)
Q Consensus 282 ~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~~~l~~~~~~gi~l~~~~~~~~~ 350 (388)
..+..+++|. ..+++.+. .+++.++++||++++|+|.+|-+ .+|.+. +.|+.+|+++...++
T Consensus 276 ~~a~~~~dg~-v~i~ve~a---k~~k~~tle~DvlLVsiGRrP~t--~GLgle-~iGi~~D~r~rv~v~ 337 (506)
T KOG1335|consen 276 TSATRNGDGP-VEIEVENA---KTGKKETLECDVLLVSIGRRPFT--EGLGLE-KIGIELDKRGRVIVN 337 (506)
T ss_pred EEeeccCCCc-eEEEEEec---CCCceeEEEeeEEEEEccCcccc--cCCChh-hcccccccccceecc
Confidence 9999877764 45555543 36778899999999999999987 345554 356666666654444
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.8e-21 Score=204.67 Aligned_cols=227 Identities=15% Similarity=0.108 Sum_probs=160.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCC-CCCCcchhHHHHHHHHhhcCC-CcEEEceEEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGV-APDHPEVKNVINTFTKTGDNP-RVNFYGNICLG 90 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~-~p~~~~~~~~~~~~~~~~~~~-~i~~~~~~~v~ 90 (388)
.++|+|||||||||+||.++++ .|.+|+|||+.+.+||.+.+.. ........++.....+.+... +++++.++.+.
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar--~G~~V~liD~~~~~GG~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~v~v~~~t~V~ 240 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAAR--AGARVILVDEQPEAGGSLLSEAETIDGKPAADWAAATVAELTAMPEVTLLPRTTAF 240 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCCCCCeeeccccccCCccHHHHHHHHHHHHhcCCCcEEEcCCEEE
Confidence 4799999999999999999999 9999999999999999885421 011123344545555555555 58888765442
Q ss_pred EE-----------ee----------e-ccc-ccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccC
Q psy4525 91 QD-----------IS----------L-GDL-TNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLD 147 (388)
Q Consensus 91 ~~-----------~~----------~-~~~-~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~ 147 (388)
.. .. . +.. ...||+||||||+.+ +++++||.+.++|+++.......+. .
T Consensus 241 ~i~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~i~a~~VILATGa~~-r~~pipG~~~pgV~~~~~~~~~l~~-------~ 312 (985)
T TIGR01372 241 GYYDHNTVGALERVTDHLDAPPKGVPRERLWRIRAKRVVLATGAHE-RPLVFANNDRPGVMLAGAARTYLNR-------Y 312 (985)
T ss_pred EEecCCeEEEEEEeeeccccccCCccccceEEEEcCEEEEcCCCCC-cCCCCCCCCCCCcEEchHHHHHHHh-------h
Confidence 10 00 0 000 237999999999998 6889999999999987655433221 1
Q ss_pred cCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCce
Q psy4525 148 LSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQ 227 (388)
Q Consensus 148 ~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~ 227 (388)
....+++|+|||+|++|+|+|..|+ +.+.+.|+++.+++...
T Consensus 313 ~~~~gk~VvViG~G~~g~e~A~~L~--------------------~~G~~vV~vv~~~~~~~------------------ 354 (985)
T TIGR01372 313 GVAPGKRIVVATNNDSAYRAAADLL--------------------AAGIAVVAIIDARADVS------------------ 354 (985)
T ss_pred CcCCCCeEEEECCCHHHHHHHHHHH--------------------HcCCceEEEEccCcchh------------------
Confidence 1235799999999999999999876 35656788887664320
Q ss_pred EEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCc
Q psy4525 228 TVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTED 307 (388)
Q Consensus 228 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~ 307 (388)
..+...+ .+.||+++++..++++.+ ++.+.++++.. ..++
T Consensus 355 ----------------------~~l~~~L------------~~~GV~i~~~~~v~~i~g--~~~v~~V~l~~----~~g~ 394 (985)
T TIGR01372 355 ----------------------PEARAEA------------RELGIEVLTGHVVAATEG--GKRVSGVAVAR----NGGA 394 (985)
T ss_pred ----------------------HHHHHHH------------HHcCCEEEcCCeEEEEec--CCcEEEEEEEe----cCCc
Confidence 0011111 257899999999999984 45677776642 1356
Q ss_pred eeEEecceEEEccccCCccC
Q psy4525 308 TELIPSGIAFRSIGYQSRCV 327 (388)
Q Consensus 308 ~~~l~~D~Vi~a~G~~p~~~ 327 (388)
+++++||.|++++|++||+.
T Consensus 395 ~~~i~~D~V~va~G~~Pnt~ 414 (985)
T TIGR01372 395 GQRLEADALAVSGGWTPVVH 414 (985)
T ss_pred eEEEECCEEEEcCCcCchhH
Confidence 67899999999999999973
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-21 Score=176.84 Aligned_cols=259 Identities=19% Similarity=0.227 Sum_probs=180.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceee--CCC----CCCcchhHHHHHHHHhhcCCCcEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY--GVA----PDHPEVKNVINTFTKTGDNPRVNFY 84 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~--g~~----p~~~~~~~~~~~~~~~~~~~~i~~~ 84 (388)
+..++|+||||||||-+||.+.++ +|++.=++-. .+||.... ++. -.+.+..++...+.+..+++.+++.
T Consensus 209 k~~yDVLvVGgGPAgaaAAiYaAR--KGiRTGl~ae--rfGGQvldT~~IENfIsv~~teGpkl~~ale~Hv~~Y~vDim 284 (520)
T COG3634 209 KDAYDVLVVGGGPAGAAAAIYAAR--KGIRTGLVAE--RFGGQVLDTMGIENFISVPETEGPKLAAALEAHVKQYDVDVM 284 (520)
T ss_pred cCCceEEEEcCCcchhHHHHHHHh--hcchhhhhhh--hhCCeeccccchhheeccccccchHHHHHHHHHHhhcCchhh
Confidence 457999999999999999999999 8998766542 46776522 221 1123566777788888888888765
Q ss_pred ceEEEE-----------EEeeeccccc-ccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCcccc-CcCCC
Q psy4525 85 GNICLG-----------QDISLGDLTN-AYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASL-DLSLD 151 (388)
Q Consensus 85 ~~~~v~-----------~~~~~~~~~~-~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~ 151 (388)
.-.+.. ..+++..+.. ....+|+|||+++ |..++||.+ +|... +..+|..| ...++
T Consensus 285 n~qra~~l~~a~~~~~l~ev~l~nGavLkaktvIlstGArW-Rn~nvPGE~--------e~rnK--GVayCPHCDGPLF~ 353 (520)
T COG3634 285 NLQRASKLEPAAVEGGLIEVELANGAVLKARTVILATGARW-RNMNVPGED--------EYRNK--GVAYCPHCDGPLFK 353 (520)
T ss_pred hhhhhhcceecCCCCccEEEEecCCceeccceEEEecCcch-hcCCCCchH--------HHhhC--CeeeCCCCCCcccC
Confidence 333221 1234443322 5778999999999 799999987 44422 32233333 67789
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEec
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFR 231 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~ 231 (388)
+|+|+|||||+||+|.|..|+ .-+.+||++.=.+ +++.
T Consensus 354 gK~VAVIGGGNSGvEAAIDLA---------------------Giv~hVtllEF~~---------eLkA------------ 391 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLA---------------------GIVEHVTLLEFAP---------ELKA------------ 391 (520)
T ss_pred CceEEEECCCcchHHHHHhHH---------------------hhhheeeeeecch---------hhhh------------
Confidence 999999999999999999997 3356899876332 1110
Q ss_pred ccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEE
Q psy4525 232 NEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELI 311 (388)
Q Consensus 232 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l 311 (388)
.+-+...+. .-.++.++.+...+++.+++ .+|.++...+. .+++...+
T Consensus 392 -----------------D~VLq~kl~-----------sl~Nv~ii~na~Ttei~Gdg-~kV~Gl~Y~dr---~sge~~~l 439 (520)
T COG3634 392 -----------------DAVLQDKLR-----------SLPNVTIITNAQTTEVKGDG-DKVTGLEYRDR---VSGEEHHL 439 (520)
T ss_pred -----------------HHHHHHHHh-----------cCCCcEEEecceeeEEecCC-ceecceEEEec---cCCceeEE
Confidence 011112221 14689999999999999753 68899988653 36777888
Q ss_pred ecceEEEccccCCccC--CCCCcccCCCccccCCCCCCeecchhhHHhHH
Q psy4525 312 PSGIAFRSIGYQSRCV--DSDIPFNEKSCTVIPKEGVPVVTWEGWKAIDK 359 (388)
Q Consensus 312 ~~D~Vi~a~G~~p~~~--~~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~ 359 (388)
+-+-|++-+|.-||+. ...+.+.+.+-|++|.+|...+. ..+.+.|+
T Consensus 440 ~LeGvFVqIGL~PNT~WLkg~vel~~rGEIivD~~g~Tsvp-GvFAAGD~ 488 (520)
T COG3634 440 ELEGVFVQIGLLPNTEWLKGAVELNRRGEIIVDARGETNVP-GVFAAGDC 488 (520)
T ss_pred EeeeeEEEEecccChhHhhchhhcCcCccEEEecCCCcCCC-ceeecCcc
Confidence 9999999999999983 33467777777889988875544 45555554
|
|
| >KOG0405|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.5e-21 Score=173.55 Aligned_cols=244 Identities=18% Similarity=0.185 Sum_probs=162.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCc---------------------------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHP--------------------------- 63 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~--------------------------- 63 (388)
..+|..|||||-.|+++|...++ .|.++.++|..-.+||.+ ++||.|...
T Consensus 19 k~fDylvIGgGSGGvasARrAa~--~GAkv~l~E~~f~lGGTCVn~GCVPKKvm~~~a~~~~~~~da~~yG~~~~~~~~f 96 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAAS--HGAKVALCELPFGLGGTCVNVGCVPKKVMWYAADYSEEMEDAKDYGFPINEEGSF 96 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHh--cCceEEEEecCCCcCceEEeeccccceeEEehhhhhHHhhhhhhcCCccccccCC
Confidence 46899999999999999999999 899999999887888887 778876320
Q ss_pred -------chhHHHH----HHHHhhcCCCcEEEceE-EEEE----Eeeecccc---cccCEEEEeeCCCCCCCCCCCCCCC
Q psy4525 64 -------EVKNVIN----TFTKTGDNPRVNFYGNI-CLGQ----DISLGDLT---NAYHAVVLTYGADNDKKLNIPGEDG 124 (388)
Q Consensus 64 -------~~~~~~~----~~~~~~~~~~i~~~~~~-~v~~----~~~~~~~~---~~yd~lvlAtG~~~~~~~~i~g~~~ 124 (388)
....+.. .|++.+.+.+++++.+. ++.. ++...+.. ....+++||||..|. .|.|||.+.
T Consensus 97 dW~~ik~krdayi~RLngIY~~~L~k~~V~~i~G~a~f~~~~~v~V~~~d~~~~~Ytak~iLIAtGg~p~-~PnIpG~E~ 175 (478)
T KOG0405|consen 97 DWKVIKQKRDAYILRLNGIYKRNLAKAAVKLIEGRARFVSPGEVEVEVNDGTKIVYTAKHILIATGGRPI-IPNIPGAEL 175 (478)
T ss_pred cHHHHHhhhhHHHHHHHHHHHhhccccceeEEeeeEEEcCCCceEEEecCCeeEEEecceEEEEeCCccC-CCCCCchhh
Confidence 0112222 23445555667666443 2211 23333332 256799999999995 779998652
Q ss_pred CCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEee
Q psy4525 125 KNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGR 204 (388)
Q Consensus 125 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r 204 (388)
-+++..|. .....++|++|+|+|++|+|+|..++ .-..+++++.|
T Consensus 176 --gidSDgff------------~Lee~Pkr~vvvGaGYIavE~Agi~~---------------------gLgsethlfiR 220 (478)
T KOG0405|consen 176 --GIDSDGFF------------DLEEQPKRVVVVGAGYIAVEFAGIFA---------------------GLGSETHLFIR 220 (478)
T ss_pred --cccccccc------------chhhcCceEEEEccceEEEEhhhHHh---------------------hcCCeeEEEEe
Confidence 12222333 12234799999999999999999876 23357999999
Q ss_pred cCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceee
Q psy4525 205 RGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEF 284 (388)
Q Consensus 205 ~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i 284 (388)
.+.....|.+ .++ ..+.+. +..+||.+|.+++++++
T Consensus 221 ~~kvLR~FD~-~i~-------------------------------~~v~~~------------~~~~ginvh~~s~~~~v 256 (478)
T KOG0405|consen 221 QEKVLRGFDE-MIS-------------------------------DLVTEH------------LEGRGINVHKNSSVTKV 256 (478)
T ss_pred cchhhcchhH-HHH-------------------------------HHHHHH------------hhhcceeecccccceee
Confidence 9876655442 111 111122 23789999999999999
Q ss_pred eeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCCCCCcccCCCccccCCCCCCee
Q psy4525 285 KLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSCTVIPKEGVPVV 349 (388)
Q Consensus 285 ~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~~~l~~~~~~gi~l~~~~~~~~ 349 (388)
....++-...+ +..+....+|.++||+|.+||+.. |.+. +-|+.+++.|.+.+
T Consensus 257 ~K~~~g~~~~i---------~~~~~i~~vd~llwAiGR~Pntk~--L~le-~vGVk~~~~g~Iiv 309 (478)
T KOG0405|consen 257 IKTDDGLELVI---------TSHGTIEDVDTLLWAIGRKPNTKG--LNLE-NVGVKTDKNGAIIV 309 (478)
T ss_pred eecCCCceEEE---------EeccccccccEEEEEecCCCCccc--ccch-hcceeeCCCCCEEE
Confidence 87665544333 233345569999999999999953 2232 34555555544433
|
|
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1e-20 Score=186.09 Aligned_cols=267 Identities=17% Similarity=0.205 Sum_probs=185.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCC-CCcEEEEcCCCCCC-Cce-eeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLP-QSTVDIYEKLPVPF-GLV-RYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICL 89 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~-g~~v~lie~~~~~g-g~~-~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v 89 (388)
..++||||.|+||..+...+.+..+ -++||+|..++++. ... ...+.+.....+++.-.-.+++++++++++.+..+
T Consensus 3 k~klvvvGnGmag~r~iEell~~~~~~~~iTvfg~Ep~~nY~Ri~Ls~vl~~~~~~edi~l~~~dwy~~~~i~L~~~~~v 82 (793)
T COG1251 3 KQKLVIIGNGMAGHRTIEELLESAPDLYDITVFGEEPRPNYNRILLSSVLAGEKTAEDISLNRNDWYEENGITLYTGEKV 82 (793)
T ss_pred ceeEEEEecccchhhHHHHHHhcCcccceEEEeccCCCccccceeeccccCCCccHHHHhccchhhHHHcCcEEEcCCee
Confidence 4689999999999999999998543 47999999887652 111 11122333455666666677889999999988776
Q ss_pred EE------Eeeecccc-cccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCCh
Q psy4525 90 GQ------DISLGDLT-NAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGN 162 (388)
Q Consensus 90 ~~------~~~~~~~~-~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~ 162 (388)
.. .++.+.+. ..||+||+||||.|. .+++||.+.++++.-+++...+.... .....++.+|||||.
T Consensus 83 ~~idr~~k~V~t~~g~~~~YDkLilATGS~pf-i~PiPG~~~~~v~~~R~i~D~~am~~------~ar~~~~avVIGGGL 155 (793)
T COG1251 83 IQIDRANKVVTTDAGRTVSYDKLIIATGSYPF-ILPIPGSDLPGVFVYRTIDDVEAMLD------CARNKKKAVVIGGGL 155 (793)
T ss_pred EEeccCcceEEccCCcEeecceeEEecCcccc-ccCCCCCCCCCeeEEecHHHHHHHHH------HHhccCCcEEEccch
Confidence 32 24444443 489999999999995 77899999999998887764432211 112246689999999
Q ss_pred HHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhh
Q psy4525 163 VAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEAS 242 (388)
Q Consensus 163 sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~ 242 (388)
.|+|.|..|. ..+ -++++++-.+.++....
T Consensus 156 LGlEaA~~L~--------------------~~G-m~~~Vvh~~~~lMerQL----------------------------- 185 (793)
T COG1251 156 LGLEAARGLK--------------------DLG-MEVTVVHIAPTLMERQL----------------------------- 185 (793)
T ss_pred hhhHHHHHHH--------------------hCC-CceEEEeecchHHHHhh-----------------------------
Confidence 9999999775 233 46888887765432211
Q ss_pred ccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEcccc
Q psy4525 243 ATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
.+...+++... +.+.|++++++....++.+ ++.+.++++. ++.++++|.||+|+|+
T Consensus 186 ---D~~ag~lL~~~-----------le~~Gi~~~l~~~t~ei~g--~~~~~~vr~~--------DG~~i~ad~VV~a~GI 241 (793)
T COG1251 186 ---DRTAGRLLRRK-----------LEDLGIKVLLEKNTEEIVG--EDKVEGVRFA--------DGTEIPADLVVMAVGI 241 (793)
T ss_pred ---hhHHHHHHHHH-----------HHhhcceeecccchhhhhc--CcceeeEeec--------CCCcccceeEEEeccc
Confidence 11111111111 2378999999999999985 5788888874 4568999999999999
Q ss_pred CCccC---CCCCcccCCCccccCCCCCCeecchhhHHhHHHHHH
Q psy4525 323 QSRCV---DSDIPFNEKSCTVIPKEGVPVVTWEGWKAIDKEETE 363 (388)
Q Consensus 323 ~p~~~---~~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~~~~~ 363 (388)
+||.. .++++++ +||++|+..... +.+.....+++|..
T Consensus 242 rPn~ela~~aGlavn--rGIvvnd~mqTs-dpdIYAvGEcae~~ 282 (793)
T COG1251 242 RPNDELAKEAGLAVN--RGIVVNDYMQTS-DPDIYAVGECAEHR 282 (793)
T ss_pred ccccHhHHhcCcCcC--CCeeeccccccc-CCCeeehhhHHHhc
Confidence 99985 2678886 499998766432 33444444455443
|
|
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-20 Score=165.81 Aligned_cols=157 Identities=26% Similarity=0.341 Sum_probs=102.3
Q ss_pred EEECccHHHHHHHHHHHhhCCCCc-EEEEcCCCCCCCceee-C-C----CCC---------------------------C
Q psy4525 17 CIVGSGPAGFYCAQQILKLLPQST-VDIYEKLPVPFGLVRY-G-V----APD---------------------------H 62 (388)
Q Consensus 17 vIIGaG~aGl~aA~~l~~~~~g~~-v~lie~~~~~gg~~~~-g-~----~p~---------------------------~ 62 (388)
+||||||+||++|..|.+ .|.+ ++|||+++.+||.|.. . . .|. +
T Consensus 1 ~IIGaG~aGl~~a~~l~~--~g~~~v~v~e~~~~~Gg~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLE--RGIDPVVVLERNDRPGGVWRRYYSYTRLHSPSFFSSDFGLPDFESFSFDDSPEWRWPHDF 78 (203)
T ss_dssp EEE--SHHHHHHHHHHHH--TT---EEEEESSSSSTTHHHCH-TTTT-BSSSCCTGGSS--CCCHSCHHHHHHHHHSBSS
T ss_pred CEECcCHHHHHHHHHHHh--CCCCcEEEEeCCCCCCCeeEEeCCCCccccCccccccccCCcccccccccCCCCCCCccc
Confidence 699999999999999999 8998 9999999999998842 0 0 011 1
Q ss_pred cchhHHHHHHHHhhcCCCcEEEceEEEEEE--------eeeccc-ccccCEEEEeeCCC-CCCCCCCCC-CCCCCeeecc
Q psy4525 63 PEVKNVINTFTKTGDNPRVNFYGNICLGQD--------ISLGDL-TNAYHAVVLTYGAD-NDKKLNIPG-EDGKNIISAR 131 (388)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~--------~~~~~~-~~~yd~lvlAtG~~-~~~~~~i~g-~~~~~v~~~~ 131 (388)
...+++.+++.++++++++++++++.|... +++.+. ...+|+||+|||.. .++.|.++| .+. .+++..
T Consensus 79 ~~~~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~a~~VVlAtG~~~~p~~p~~~g~~~~-~~~h~~ 157 (203)
T PF13738_consen 79 PSGEEVLDYLQEYAERFGLEIRFNTRVESVRRDGDGWTVTTRDGRTIRADRVVLATGHYSHPRIPDIPGSAFR-PIIHSA 157 (203)
T ss_dssp EBHHHHHHHHHHHHHHTTGGEETS--EEEEEEETTTEEEEETTS-EEEEEEEEE---SSCSB---S-TTGGCS-EEEEGG
T ss_pred CCHHHHHHHHHHHHhhcCcccccCCEEEEEEEeccEEEEEEEecceeeeeeEEEeeeccCCCCcccccccccc-ceEehh
Confidence 234567788888888899888888877432 444444 34799999999962 345778888 333 555665
Q ss_pred cccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcc
Q psy4525 132 SFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGAL 208 (388)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~ 208 (388)
++.. ...+++++|+|||+|.||+|+|..|+ +.+ ++|+++.|++.|
T Consensus 158 ~~~~-----------~~~~~~k~V~VVG~G~SA~d~a~~l~--------------------~~g-~~V~~~~R~~~~ 202 (203)
T PF13738_consen 158 DWRD-----------PEDFKGKRVVVVGGGNSAVDIAYALA--------------------KAG-KSVTLVTRSPIW 202 (203)
T ss_dssp G-ST-----------TGGCTTSEEEEE--SHHHHHHHHHHT--------------------TTC-SEEEEEESS---
T ss_pred hcCC-----------hhhcCCCcEEEEcChHHHHHHHHHHH--------------------hhC-CEEEEEecCCCC
Confidence 5432 23456899999999999999999887 233 789999999765
|
... |
| >KOG1399|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.1e-20 Score=178.88 Aligned_cols=148 Identities=22% Similarity=0.345 Sum_probs=109.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeC--------C-C--------------C--------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYG--------V-A--------------P-------- 60 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g--------~-~--------------p-------- 60 (388)
..++|+|||||||||.+|..|.+ .|.++++|||.+.+||+|.|. . . |
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~--~g~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~tn~pKe~~~~~dfpf~~~~ 82 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLR--EGHEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRTNLPKEMMGYSDFPFPERD 82 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHH--CCCCceEEEecCCccceEeecCcccccccchhhhhhccCChhhhcCCCCCCcccC
Confidence 46899999999999999999999 999999999999999999775 1 1 1
Q ss_pred --CCcchhHHHHHHHHhhcCCCc--EEEceEEEEE---------Eeeecc-----cccccCEEEEeeCCCC-CCCCCCCC
Q psy4525 61 --DHPEVKNVINTFTKTGDNPRV--NFYGNICLGQ---------DISLGD-----LTNAYHAVVLTYGADN-DKKLNIPG 121 (388)
Q Consensus 61 --~~~~~~~~~~~~~~~~~~~~i--~~~~~~~v~~---------~~~~~~-----~~~~yd~lvlAtG~~~-~~~~~i~g 121 (388)
.++...++.+++..+++++++ .+.+++.+.. .+...+ .+.-||.|++|||... ++.|.++|
T Consensus 83 ~~~~p~~~e~~~YL~~yA~~F~l~~~i~f~~~v~~v~~~~~gkW~V~~~~~~~~~~~~ifd~VvVctGh~~~P~~P~~~g 162 (448)
T KOG1399|consen 83 PRYFPSHREVLEYLRDYAKHFDLLKMINFNTEVVRVDSIDKGKWRVTTKDNGTQIEEEIFDAVVVCTGHYVEPRIPQIPG 162 (448)
T ss_pred cccCCCHHHHHHHHHHHHHhcChhhheEecccEEEEeeccCCceeEEEecCCcceeEEEeeEEEEcccCcCCCCCCcCCC
Confidence 113455889999999999886 3555553211 121111 1236999999999874 45677777
Q ss_pred CC----CCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhc
Q psy4525 122 ED----GKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILL 172 (388)
Q Consensus 122 ~~----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~ 172 (388)
.. ...++|+.+|. ....+.+|+|+|||+|+||+|++..++
T Consensus 163 ~~~~~f~G~~iHS~~Yk-----------~~e~f~~k~VlVIG~g~SG~DIs~d~~ 206 (448)
T KOG1399|consen 163 PGIESFKGKIIHSHDYK-----------SPEKFRDKVVLVVGCGNSGMDISLDLL 206 (448)
T ss_pred CchhhcCCcceehhhcc-----------CcccccCceEEEECCCccHHHHHHHHH
Confidence 32 23455665554 145577899999999999999999876
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-19 Score=175.04 Aligned_cols=167 Identities=20% Similarity=0.240 Sum_probs=117.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCc-EEEEcCCCCCCCceeeCCC--------------CCCc--------chhH
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQST-VDIYEKLPVPFGLVRYGVA--------------PDHP--------EVKN 67 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~-v~lie~~~~~gg~~~~g~~--------------p~~~--------~~~~ 67 (388)
....+|+|||||++||++|.+|++ .|.. ++|||+.+.+||.|++... |..+ ....
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~--~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~~~~p~~~~~~~~~~~~ 83 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQ--AGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGFPFLPFRWDEAFAPFAE 83 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHH--cCCCcEEEEEccCCcCCcchhccCCceEECCchheeccCCCccCCcccCCCccc
Confidence 456899999999999999999999 8888 9999999999999855322 1111 1223
Q ss_pred HHHHHHHhhcCCCcEE--EceEEEEE----------Eeeeccccc---ccCEEEEeeCC-CCCCCCCCCCCCC--CCeee
Q psy4525 68 VINTFTKTGDNPRVNF--YGNICLGQ----------DISLGDLTN---AYHAVVLTYGA-DNDKKLNIPGEDG--KNIIS 129 (388)
Q Consensus 68 ~~~~~~~~~~~~~i~~--~~~~~v~~----------~~~~~~~~~---~yd~lvlAtG~-~~~~~~~i~g~~~--~~v~~ 129 (388)
+.+++..+++++++.+ .+++.|.. .++.++... .+|.||+|||. ..+..|.++|.+. ..++|
T Consensus 84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~~~~~~~a~~vV~ATG~~~~P~iP~~~G~~~f~g~~~H 163 (443)
T COG2072 84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDEDTKRWTVTTSDGGTGELTADFVVVATGHLSEPYIPDFAGLDEFKGRILH 163 (443)
T ss_pred HHHHHHHHHHHcCceeEEEcccceEEEEecCCCCeEEEEEcCCCeeeEecCEEEEeecCCCCCCCCCCCCccCCCceEEc
Confidence 5555666666555432 23333211 133333332 39999999995 3335778888762 23455
Q ss_pred cccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCccc
Q psy4525 130 ARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQ 209 (388)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~ 209 (388)
+.+|.. ...+++|+|+|||+|+||+|+|.+|+ +.+ ++||++.|++.+.
T Consensus 164 S~~~~~-----------~~~~~GKrV~VIG~GaSA~di~~~l~--------------------~~g-a~vt~~qRs~~~~ 211 (443)
T COG2072 164 SADWPN-----------PEDLRGKRVLVIGAGASAVDIAPELA--------------------EVG-ASVTLSQRSPPHI 211 (443)
T ss_pred hhcCCC-----------ccccCCCeEEEECCCccHHHHHHHHH--------------------hcC-CeeEEEecCCCce
Confidence 555441 45678999999999999999999887 234 7899999999887
Q ss_pred cc
Q psy4525 210 VA 211 (388)
Q Consensus 210 ~~ 211 (388)
.+
T Consensus 212 ~~ 213 (443)
T COG2072 212 LP 213 (443)
T ss_pred ec
Confidence 55
|
|
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.1e-20 Score=173.78 Aligned_cols=262 Identities=15% Similarity=0.167 Sum_probs=136.9
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC---CceeeCCC--------------C----------------
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF---GLVRYGVA--------------P---------------- 60 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g---g~~~~g~~--------------p---------------- 60 (388)
+|+++||.||++|++|..|.+. ...++.+||+.+.+. |++..|.. |
T Consensus 3 ~D~igIG~GP~nLslA~~l~~~-~~~~~~f~e~~~~f~Wh~gmll~~~~~q~~fl~Dlvt~~~P~s~~sflnYL~~~~rl 81 (341)
T PF13434_consen 3 YDLIGIGFGPFNLSLAALLEEH-GDLKALFLERRPSFSWHPGMLLPGARMQVSFLKDLVTLRDPTSPFSFLNYLHEHGRL 81 (341)
T ss_dssp ESEEEE--SHHHHHHHHHHHHH-H---EEEEES-SS--TTGGG--SS-B-SS-TTSSSSTTT-TTSTTSHHHHHHHTT-H
T ss_pred eeEEEEeeCHHHHHHHHHhhhc-CCCCEEEEecCCCCCcCCccCCCCCccccccccccCcCcCCCCcccHHHHHHHcCCh
Confidence 6999999999999999999995 358999999887542 33322110 1
Q ss_pred --------CCcchhHHHHHHHHhhcCCCcEEEceEEEEE------------Eeeec-----ccccccCEEEEeeCCCCCC
Q psy4525 61 --------DHPEVKNVINTFTKTGDNPRVNFYGNICLGQ------------DISLG-----DLTNAYHAVVLTYGADNDK 115 (388)
Q Consensus 61 --------~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~------------~~~~~-----~~~~~yd~lvlAtG~~~~~ 115 (388)
..+...++.+++...++++.-.++++..|.. .+... .....++.||+|||..|.
T Consensus 82 ~~f~~~~~~~p~R~ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~~~~~~~~V~~~~~~g~~~~~~ar~vVla~G~~P~- 160 (341)
T PF13434_consen 82 YEFYNRGYFFPSRREFNDYLRWVAEQLDNQVRYGSEVTSIEPDDDGDEDLFRVTTRDSDGDGETYRARNVVLATGGQPR- 160 (341)
T ss_dssp HHHHHH--SS-BHHHHHHHHHHHHCCGTTTEEESEEEEEEEEEEETTEEEEEEEEEETTS-EEEEEESEEEE----EE--
T ss_pred hhhhhcCCCCCCHHHHHHHHHHHHHhCCCceEECCEEEEEEEecCCCccEEEEEEeecCCCeeEEEeCeEEECcCCCCC-
Confidence 1133456666666666666544555555521 12221 112267899999997663
Q ss_pred CCC-CCCCC-CCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhc
Q psy4525 116 KLN-IPGED-GKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLST 193 (388)
Q Consensus 116 ~~~-i~g~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~ 193 (388)
.|. +.... .+.|+|+.+|...... ....++|+|||||.||.|++..|.. +
T Consensus 161 iP~~~~~~~~~~~v~Hss~~~~~~~~---------~~~~~~V~VVGgGQSAAEi~~~L~~-------------------~ 212 (341)
T PF13434_consen 161 IPEWFQDLPGSPRVFHSSEYLSRIDQ---------SLAGKRVAVVGGGQSAAEIFLDLLR-------------------R 212 (341)
T ss_dssp --GGGGGGTT-TTEEEGGGHHHHHT--------------EEEEEE-SSHHHHHHHHHHHH-------------------H
T ss_pred CCcchhhcCCCCCEEEehHhhhcccc---------ccCCCeEEEECCcHhHHHHHHHHHh-------------------C
Confidence 442 33333 3789999999855321 3457899999999999999998861 1
Q ss_pred CCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHH----------------HH
Q psy4525 194 SRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTEL----------------IL 257 (388)
Q Consensus 194 ~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------------~~ 257 (388)
....+|+++.|+..+... ...|..+..+.|+..+.+...+. ..+.+++.. +.
T Consensus 213 ~~~~~V~~i~R~~~~~~~---------d~s~f~ne~f~P~~v~~f~~l~~---~~R~~~l~~~~~~ny~~i~~~~l~~iy 280 (341)
T PF13434_consen 213 GPEAKVTWISRSPGFFPM---------DDSPFVNEIFSPEYVDYFYSLPD---EERRELLREQRHTNYGGIDPDLLEAIY 280 (341)
T ss_dssp -TTEEEEEEESSSS-EB-------------CCHHGGGSHHHHHHHHTS-H---HHHHHHHHHTGGGTSSEB-HHHHHHHH
T ss_pred CCCcEEEEEECCCccCCC---------ccccchhhhcCchhhhhhhcCCH---HHHHHHHHHhHhhcCCCCCHHHHHHHH
Confidence 222589999999876543 23344444455554443333321 112222211 11
Q ss_pred hhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccC
Q psy4525 258 KTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 258 ~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
..++... -..+..+.++.++.++.+...+++. ..+.+.+. .++..+++++|.||+||||+
T Consensus 281 ~~lY~~~--v~g~~~~~l~~~~~v~~~~~~~~~~-~~l~~~~~---~~~~~~~~~~D~VilATGy~ 340 (341)
T PF13434_consen 281 DRLYEQR--VSGRGRLRLLPNTEVTSAEQDGDGG-VRLTLRHR---QTGEEETLEVDAVILATGYR 340 (341)
T ss_dssp HHHHHHH--HHT---SEEETTEEEEEEEEES-SS-EEEEEEET---TT--EEEEEESEEEE---EE
T ss_pred HHHHHHH--hcCCCCeEEeCCCEEEEEEECCCCE-EEEEEEEC---CCCCeEEEecCEEEEcCCcc
Confidence 1111000 0123468899999999998765433 23444332 35677899999999999996
|
|
| >COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-18 Score=158.64 Aligned_cols=326 Identities=13% Similarity=0.111 Sum_probs=195.8
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC---CCceeeCCC--------------CC------------
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP---FGLVRYGVA--------------PD------------ 61 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~---gg~~~~g~~--------------p~------------ 61 (388)
....|++.||.||+.|++|..|... .+.++.++|+.+.+ .|++..|.. |.
T Consensus 3 ~~~~DliGIG~GPfNL~LA~ll~e~-~~~~~lFLerkp~F~WHpGmllegstlQv~FlkDLVTl~~PTs~ySFLNYL~~h 81 (436)
T COG3486 3 AEVLDLIGIGIGPFNLSLAALLEEH-SGLKSLFLERKPDFSWHPGMLLEGSTLQVPFLKDLVTLVDPTSPYSFLNYLHEH 81 (436)
T ss_pred CcceeeEEEccCchHHHHHHHhccc-cCcceEEEecCCCCCcCCCcccCCccccccchhhhccccCCCCchHHHHHHHHc
Confidence 3457999999999999999999984 34889999998764 233322211 11
Q ss_pred ------------CcchhHHHHHHHHhhcCCCcEEEceEEEEEE------------eeeccc-ccccCEEEEeeCCCCCCC
Q psy4525 62 ------------HPEVKNVINTFTKTGDNPRVNFYGNICLGQD------------ISLGDL-TNAYHAVVLTYGADNDKK 116 (388)
Q Consensus 62 ------------~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~------------~~~~~~-~~~yd~lvlAtG~~~~~~ 116 (388)
++...++.++....+..+ -.+++++.|... +...+. ...+..|||++|..|.-+
T Consensus 82 ~RLy~Fl~~e~f~i~R~Ey~dY~~Waa~~l-~~~rfg~~V~~i~~~~~d~~~~~~~~t~~~~~y~ar~lVlg~G~~P~IP 160 (436)
T COG3486 82 GRLYEFLNYETFHIPRREYNDYCQWAASQL-PSLRFGEEVTDISSLDGDAVVRLFVVTANGTVYRARNLVLGVGTQPYIP 160 (436)
T ss_pred chHhhhhhhhcccccHHHHHHHHHHHHhhC-CccccCCeeccccccCCcceeEEEEEcCCCcEEEeeeEEEccCCCcCCC
Confidence 122344444444444443 345555555311 111122 236779999999988534
Q ss_pred CCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCC
Q psy4525 117 LNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRI 196 (388)
Q Consensus 117 ~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (388)
+.+.....+.+||+.+|..+ ++.. ...++|.|||+|.||.|+...|....+. ..
T Consensus 161 ~~f~~l~~~~vfHss~~~~~---~~~~------~~~~~V~ViG~GQSAAEi~~~Ll~~~~~----------------~~- 214 (436)
T COG3486 161 PCFRSLIGERVFHSSEYLER---HPEL------LQKRSVTVIGSGQSAAEIFLDLLNSQPP----------------QD- 214 (436)
T ss_pred hHHhCcCccceeehHHHHHh---hHHh------hcCceEEEEcCCccHHHHHHHHHhCCCC----------------cC-
Confidence 44555556789999999843 2111 1223499999999999999988622211 12
Q ss_pred cEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccc----------------cchhhHHHHHHHhhC
Q psy4525 197 KSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATL----------------ARPRKRLTELILKTS 260 (388)
Q Consensus 197 ~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l----------------~~~~~~~~~~~~~~~ 260 (388)
.++.|+.|+..+.. |...+.....+.|+..+.+...+.+- .....++...|....
T Consensus 215 ~~l~witR~~gf~p---------~d~Skf~~e~F~P~y~dyfy~l~~~~r~~ll~~~~~~YkgI~~~ti~~Iy~~lY~~~ 285 (436)
T COG3486 215 YQLNWITRSSGFLP---------MDYSKFGLEYFSPEYTDYFYGLPPEARDELLRKQRLLYKGISFDTIEEIYDLLYEQS 285 (436)
T ss_pred ccceeeeccCCCCc---------cccchhhhhhcCchhHHHHhcCCHHHHHHHHhhcCccccccCHHHHHHHHHHHHHHH
Confidence 25899999977644 33344444455666555444433110 011122222222221
Q ss_pred CCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccC---C---CCCccc
Q psy4525 261 NPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCV---D---SDIPFN 334 (388)
Q Consensus 261 ~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~---~---~~l~~~ 334 (388)
. ...+..+.++.++.+..++..++|+ ..+.+... .+++.+++++|.||+||||+.... . +.+.++
T Consensus 286 l-----~~~~~~v~l~~~~ev~~~~~~G~g~-~~l~~~~~---~~~~~~t~~~D~vIlATGY~~~~P~fL~~l~d~l~~d 356 (436)
T COG3486 286 L-----GGRKPDVRLLSLSEVQSVEPAGDGR-YRLTLRHH---ETGELETVETDAVILATGYRRAVPSFLEGLADRLQWD 356 (436)
T ss_pred h-----cCCCCCeeeccccceeeeecCCCce-EEEEEeec---cCCCceEEEeeEEEEecccccCCchhhhhHHHhhccc
Confidence 1 2336789999999999999876665 34444322 367888999999999999994432 1 233444
Q ss_pred CCCccc-----------------------cCCCCCCeecchhhHHhHHHHHHccccCCCCccccCCHHHHHhh
Q psy4525 335 EKSCTV-----------------------IPKEGVPVVTWEGWKAIDKEETERGKLKGKPREKIISIEEMISV 384 (388)
Q Consensus 335 ~~~gi~-----------------------l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 384 (388)
..++.. +..+|+..- .=+|.+.-++++.. +..|++.+.....+-+..+
T Consensus 357 ~~g~l~I~~dY~v~~~~~~~~~ifvqn~e~htHGig~p-dLsl~a~Raa~I~~-~L~g~~~~~~~~~~~fq~f 427 (436)
T COG3486 357 DDGRLVIGRDYRVLWDGPGKGRIFVQNAELHTHGIGAP-DLSLGAWRAAVILN-SLLGREKYPVPARAVFQQF 427 (436)
T ss_pred ccCCeEecCceeeecCCCCcceEEEecccccccccCCc-cchHHHHHHHHHHH-HHhCcCCCCCccchhhhhc
Confidence 444443 234454332 34788888888884 7788777766655444433
|
|
| >KOG4716|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.7e-18 Score=154.43 Aligned_cols=232 Identities=16% Similarity=0.218 Sum_probs=148.0
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcC---CC-----CCCCce-eeCCCCCCc------------------
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEK---LP-----VPFGLV-RYGVAPDHP------------------ 63 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~---~~-----~~gg~~-~~g~~p~~~------------------ 63 (388)
...+|++|||||.+||+||...+. .|.+|.++|- .| -+||.+ +.||.|...
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~--~G~kV~~lDfV~PtP~GtsWGlGGTCvNVGCIPKKLMHQAallG~al~da~kyG 94 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAAD--LGAKVACLDFVKPTPQGTSWGLGGTCVNVGCIPKKLMHQAALLGEALHDARKYG 94 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHh--cCCcEEEEeecccCCCCCccccCceeeecccccHHHHHHHHHHHHHHHHHHhhC
Confidence 457999999999999999999999 8999999983 11 245665 667776421
Q ss_pred ----------chhHHHHHHHHhhcCCCcEEE--ceEE-E----------E---EEeeeccccc---ccCEEEEeeCCCCC
Q psy4525 64 ----------EVKNVINTFTKTGDNPRVNFY--GNIC-L----------G---QDISLGDLTN---AYHAVVLTYGADND 114 (388)
Q Consensus 64 ----------~~~~~~~~~~~~~~~~~i~~~--~~~~-v----------~---~~~~~~~~~~---~yd~lvlAtG~~~~ 114 (388)
....+.+..++..+..|.-.+ ++.. | + ...+....++ ..+.+|||||.+|
T Consensus 95 W~~~e~~ikhdW~~l~~sVqnhI~s~NW~yRv~LreKkV~Y~NsygeFv~~h~I~at~~~gk~~~~ta~~fvIatG~RP- 173 (503)
T KOG4716|consen 95 WNVDEQKIKHDWNKLVKSVQNHIKSLNWGYRVQLREKKVEYINSYGEFVDPHKIKATNKKGKERFLTAENFVIATGLRP- 173 (503)
T ss_pred CCCccccccccHHHHHHHHHHHhhhccceEEEEeccceeeeeecceeecccceEEEecCCCceEEeecceEEEEecCCC-
Confidence 123344444555554443222 1111 1 0 0112222222 5789999999999
Q ss_pred CCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcC
Q psy4525 115 KKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTS 194 (388)
Q Consensus 115 ~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
+.|+|||.. +--+++.++. .....+.+-+|||+|++|+|+|..|+ .
T Consensus 174 rYp~IpG~~-Ey~ITSDDlF------------sl~~~PGkTLvVGa~YVaLECAgFL~---------------------g 219 (503)
T KOG4716|consen 174 RYPDIPGAK-EYGITSDDLF------------SLPYEPGKTLVVGAGYVALECAGFLK---------------------G 219 (503)
T ss_pred CCCCCCCce-eeeecccccc------------cccCCCCceEEEccceeeeehhhhHh---------------------h
Confidence 799999954 2233444443 12234567889999999999999886 2
Q ss_pred CCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEE
Q psy4525 195 RIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFR 274 (388)
Q Consensus 195 ~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 274 (388)
..-+||++.|+-.+ ..| .+.+.+.+.++ +.+.||+
T Consensus 220 fg~~vtVmVRSI~L-rGF------------------------------------Dqdmae~v~~~--------m~~~Gik 254 (503)
T KOG4716|consen 220 FGYDVTVMVRSILL-RGF------------------------------------DQDMAELVAEH--------MEERGIK 254 (503)
T ss_pred cCCCcEEEEEEeec-ccc------------------------------------cHHHHHHHHHH--------HHHhCCc
Confidence 23469999998432 111 12222232222 2378999
Q ss_pred EEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC
Q psy4525 275 PIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD 328 (388)
Q Consensus 275 ~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~ 328 (388)
|.-...|.+++.-+++++.-. ... ..++++-+-++|.|+||+|.++++.+
T Consensus 255 f~~~~vp~~Veq~~~g~l~v~-~k~---t~t~~~~~~~ydTVl~AiGR~~~~~~ 304 (503)
T KOG4716|consen 255 FLRKTVPERVEQIDDGKLRVF-YKN---TNTGEEGEEEYDTVLWAIGRKALTDD 304 (503)
T ss_pred eeecccceeeeeccCCcEEEE-eec---ccccccccchhhhhhhhhccccchhh
Confidence 999888988887666663222 221 12455556789999999999998864
|
|
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.1e-18 Score=165.90 Aligned_cols=235 Identities=14% Similarity=0.160 Sum_probs=146.1
Q ss_pred HHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCc-----chhHHHHH-HHHhhcCCCcEEEceEEEEE-E-----ee
Q psy4525 27 YCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHP-----EVKNVINT-FTKTGDNPRVNFYGNICLGQ-D-----IS 94 (388)
Q Consensus 27 ~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~-----~~~~~~~~-~~~~~~~~~i~~~~~~~v~~-~-----~~ 94 (388)
+||.+|++..+..+|+|||+++.++ ...+++ |.+. ..++...+ ..+++.+++++++.++.|.. + +.
T Consensus 1 saA~~l~~~~~~~~Vtlid~~~~~~-~~~~~l-~~~~~g~~~~~~~~~~~~~~~~~~~~gv~~~~~~~V~~id~~~~~v~ 78 (427)
T TIGR03385 1 SAASRVRRLDKESDIIVFEKTEDVS-FANCGL-PYVIGGVIDDRNKLLAYTPEVFIKKRGIDVKTNHEVIEVNDERQTVV 78 (427)
T ss_pred CHHHHHHhhCCCCcEEEEEcCCcee-EEcCCC-CeEeccccCCHHHcccCCHHHHHHhcCCeEEecCEEEEEECCCCEEE
Confidence 4788888866678999999997653 222233 3221 12222322 23344778999876655532 1 22
Q ss_pred ecc---c-ccc--cCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHH
Q psy4525 95 LGD---L-TNA--YHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVA 168 (388)
Q Consensus 95 ~~~---~-~~~--yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a 168 (388)
+.. . ... ||+||||||+.+ +.+++||.+.+++++..++..... +........+++|+|||+|++|+|+|
T Consensus 79 ~~~~~~~~~~~~~yd~lIiATG~~p-~~~~i~G~~~~~v~~~~~~~~~~~----~~~~l~~~~~~~vvViGgG~~g~e~A 153 (427)
T TIGR03385 79 VRNNKTNETYEESYDYLILSPGASP-IVPNIEGINLDIVFTLRNLEDTDA----IKQYIDKNKVENVVIIGGGYIGIEMA 153 (427)
T ss_pred EEECCCCCEEecCCCEEEECCCCCC-CCCCCCCcCCCCEEEECCHHHHHH----HHHHHhhcCCCeEEEECCCHHHHHHH
Confidence 221 1 224 999999999988 578899987677776655431100 00000012468999999999999999
Q ss_pred HHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccch
Q psy4525 169 RILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARP 248 (388)
Q Consensus 169 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 248 (388)
..|. +.+ .+|+++.+.+.+..+..++++.
T Consensus 154 ~~l~--------------------~~g-~~Vtli~~~~~~~~~~~~~~~~------------------------------ 182 (427)
T TIGR03385 154 EALR--------------------ERG-KNVTLIHRSERILNKLFDEEMN------------------------------ 182 (427)
T ss_pred HHHH--------------------hCC-CcEEEEECCcccCccccCHHHH------------------------------
Confidence 9775 233 4799999887652221111211
Q ss_pred hhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccC-
Q psy4525 249 RKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCV- 327 (388)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~- 327 (388)
+.+.+.+. +.||+++++..++++..+ +.+ +.+ .+++++++|.||+|+|++|+..
T Consensus 183 -~~~~~~l~------------~~gV~v~~~~~v~~i~~~--~~~--v~~--------~~g~~i~~D~vi~a~G~~p~~~~ 237 (427)
T TIGR03385 183 -QIVEEELK------------KHEINLRLNEEVDSIEGE--ERV--KVF--------TSGGVYQADMVILATGIKPNSEL 237 (427)
T ss_pred -HHHHHHHH------------HcCCEEEeCCEEEEEecC--CCE--EEE--------cCCCEEEeCEEEECCCccCCHHH
Confidence 11222222 579999999999999743 333 222 2345799999999999999963
Q ss_pred --CCCCcccCCCccccCCC
Q psy4525 328 --DSDIPFNEKSCTVIPKE 344 (388)
Q Consensus 328 --~~~l~~~~~~gi~l~~~ 344 (388)
..++.+++++++.+|+.
T Consensus 238 l~~~gl~~~~~G~i~vd~~ 256 (427)
T TIGR03385 238 AKDSGLKLGETGAIWVNEK 256 (427)
T ss_pred HHhcCcccCCCCCEEECCC
Confidence 14566666666777654
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >KOG2495|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=5e-17 Score=150.95 Aligned_cols=268 Identities=16% Similarity=0.147 Sum_probs=155.2
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcchhHHHHHHHHhhcCC--CcEEEceE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPEVKNVINTFTKTGDNP--RVNFYGNI 87 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~~~~~~~~~~~~~~~~--~i~~~~~~ 87 (388)
.++++|||+|+|.+|++++..|-. ..++|++++..+++--.+ ...+.-+..+.+.+.+.......+. +++++...
T Consensus 53 ~kKk~vVVLGsGW~a~S~lk~ldt--s~YdV~vVSPRnyFlFTPLLpS~~vGTve~rSIvEPIr~i~r~k~~~~~y~eAe 130 (491)
T KOG2495|consen 53 GKKKRVVVLGSGWGAISLLKKLDT--SLYDVTVVSPRNYFLFTPLLPSTTVGTVELRSIVEPIRAIARKKNGEVKYLEAE 130 (491)
T ss_pred CCCceEEEEcCchHHHHHHHhccc--cccceEEeccccceEEeeccCCccccceeehhhhhhHHHHhhccCCCceEEecc
Confidence 356899999999999999999998 899999999876642221 1111011223455666666555544 45555333
Q ss_pred EEEEE----------eeecc----cccccCEEEEeeCCCCCCCCCCCCCCCC-----Ceeeccccccccc------CCCC
Q psy4525 88 CLGQD----------ISLGD----LTNAYHAVVLTYGADNDKKLNIPGEDGK-----NIISARSFVGWYN------GLPE 142 (388)
Q Consensus 88 ~v~~~----------~~~~~----~~~~yd~lvlAtG~~~~~~~~i~g~~~~-----~v~~~~~~~~~~~------~~~~ 142 (388)
.+..+ ++... ....||+||+|+|+.+ ..+++||..-. .+.++..+...+- ..+.
T Consensus 131 c~~iDp~~k~V~~~s~t~~~~~~e~~i~YDyLViA~GA~~-~TFgipGV~e~~~FLKEv~dAqeIR~~~~~~le~a~~~~ 209 (491)
T KOG2495|consen 131 CTKIDPDNKKVHCRSLTADSSDKEFVIGYDYLVIAVGAEP-NTFGIPGVEENAHFLKEVEDAQEIRRKVIDNLEKAELPG 209 (491)
T ss_pred cEeecccccEEEEeeeccCCCcceeeecccEEEEeccCCC-CCCCCCchhhchhhhhhhhHHHHHHHHHHHHHHHhhcCC
Confidence 32211 11111 1237999999999999 48999985421 1222222110000 0111
Q ss_pred ccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhc
Q psy4525 143 DASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTK 222 (388)
Q Consensus 143 ~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~ 222 (388)
... +....-.+++|||||++|+|+|.+|+..+++=-.+.++. + ..--+||++...+
T Consensus 210 l~~-eerkRlLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~-----l--~~~i~vtLiEA~d---------------- 265 (491)
T KOG2495|consen 210 LSD-EERKRLLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPE-----L--KKDIKVTLIEAAD---------------- 265 (491)
T ss_pred CCh-HHhhheEEEEEECCCCcceeehHHHHHHHHHHHHHhhhc-----c--hhheEEEeeccch----------------
Confidence 000 112223479999999999999999973322100000000 0 0112466554443
Q ss_pred CCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCcc
Q psy4525 223 LPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQA 302 (388)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~ 302 (388)
..|+.+.+++.++..+... +.+|.++.++.++.+... .+...+
T Consensus 266 --------------------~iL~mFdkrl~~yae~~f~--------~~~I~~~~~t~Vk~V~~~------~I~~~~--- 308 (491)
T KOG2495|consen 266 --------------------HILNMFDKRLVEYAENQFV--------RDGIDLDTGTMVKKVTEK------TIHAKT--- 308 (491)
T ss_pred --------------------hHHHHHHHHHHHHHHHHhh--------hccceeecccEEEeecCc------EEEEEc---
Confidence 3345566777776665543 689999999999988631 222221
Q ss_pred ccCCceeEEecceEEEccccCCccCC----CCCcccCCCccccCC
Q psy4525 303 LVTEDTELIPSGIAFRSIGYQSRCVD----SDIPFNEKSCTVIPK 343 (388)
Q Consensus 303 ~~~~~~~~l~~D~Vi~a~G~~p~~~~----~~l~~~~~~gi~l~~ 343 (388)
..|+-+++|+-++|||||..|.+.. ..++-..++|+.+|+
T Consensus 309 -~~g~~~~iPYG~lVWatG~~~rp~~k~lm~~i~e~~rr~L~vDE 352 (491)
T KOG2495|consen 309 -KDGEIEEIPYGLLVWATGNGPRPVIKDLMKQIDEQGRRGLAVDE 352 (491)
T ss_pred -CCCceeeecceEEEecCCCCCchhhhhHhhcCCccCceeeeeec
Confidence 1455589999999999999988752 233222234777664
|
|
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-14 Score=141.24 Aligned_cols=267 Identities=16% Similarity=0.128 Sum_probs=158.7
Q ss_pred EEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCc---eeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE-
Q psy4525 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGL---VRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ- 91 (388)
Q Consensus 16 vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~---~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~- 91 (388)
++|||+|++|+++|..+++..+..+++++..+...... +.+.+.........+..... ...+.+++++.++.+..
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~v~~i 79 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYSYYRCPLSLYVGGGIASLEDLRYPPR-FNRATGIDVRTGTEVTSI 79 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCCCCccchHHhcccCCHHHhcccch-hHHhhCCEEeeCCEEEEe
Confidence 58999999999999999987778889888776543211 11111000111111111111 11345777777665532
Q ss_pred -----EeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHH
Q psy4525 92 -----DISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMD 166 (388)
Q Consensus 92 -----~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e 166 (388)
.+.+.+.+..||+|++|||+.+. .++ +....++++.+.+...... . ......++++|+|+|..|+|
T Consensus 80 d~~~~~v~~~~g~~~yd~LvlatGa~~~-~~~--~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~v~vvG~G~~gle 150 (415)
T COG0446 80 DPENKVVLLDDGEIEYDYLVLATGARPR-PPP--ISDWEGVVTLRLREDAEAL----K--GGAEPPKDVVVVGAGPIGLE 150 (415)
T ss_pred cCCCCEEEECCCcccccEEEEcCCCccc-CCC--ccccCceEEECCHHHHHHH----H--HHHhccCeEEEECCcHHHHH
Confidence 24444455589999999999884 444 4444555555444321110 0 01111589999999999999
Q ss_pred HHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhcccc
Q psy4525 167 VARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLA 246 (388)
Q Consensus 167 ~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~ 246 (388)
+|..+. +.| .+|+++.+.+++...+..++
T Consensus 151 ~A~~~~--------------------~~G-~~v~l~e~~~~~~~~~~~~~------------------------------ 179 (415)
T COG0446 151 AAEAAA--------------------KRG-KKVTLIEAADRLGGQLLDPE------------------------------ 179 (415)
T ss_pred HHHHHH--------------------HcC-CeEEEEEcccccchhhhhHH------------------------------
Confidence 999776 345 57999998877644322111
Q ss_pred chhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeE-EEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 247 RPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITG-INFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~-v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
..+.+.+.+. ..||+++++..+.++....+..... + ....+..+++|++++++|.+||
T Consensus 180 -~~~~~~~~l~------------~~gi~~~~~~~~~~i~~~~~~~~~~~~--------~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 180 -VAEELAELLE------------KYGVELLLGTKVVGVEGKGNTLVVERV--------VGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred -HHHHHHHHHH------------HCCcEEEeCCceEEEEcccCcceeeEE--------EEeCCcEEEeeEEEEeeccccc
Confidence 1122223332 6789999999999998643222211 1 2455678999999999999998
Q ss_pred cCC--CCC--cccCCCccccCCCCCCeecchhhHHhHHHHHHc
Q psy4525 326 CVD--SDI--PFNEKSCTVIPKEGVPVVTWEGWKAIDKEETER 364 (388)
Q Consensus 326 ~~~--~~l--~~~~~~gi~l~~~~~~~~~~~~w~~~~~~~~~~ 364 (388)
... ... .....+.+.+|+........+.+...|+.+...
T Consensus 239 ~~l~~~~~~~~~~~~g~i~v~~~~~~~~~~~v~a~GD~~~~~~ 281 (415)
T COG0446 239 VVLANDALPGLALAGGAVLVDERGGTSKDPDVYAAGDVAEIPA 281 (415)
T ss_pred HHHHhhCccceeccCCCEEEccccccCCCCCEEeccceEeeec
Confidence 642 121 233333477776665432334555556555543
|
|
| >KOG1346|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.4e-13 Score=124.81 Aligned_cols=287 Identities=16% Similarity=0.127 Sum_probs=160.6
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC-C-------CceeeCCCCCCc-----------------chhH
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP-F-------GLVRYGVAPDHP-----------------EVKN 67 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~-g-------g~~~~g~~p~~~-----------------~~~~ 67 (388)
....+|||+|.+..+++..++.+.++.++.+|..++.. + -+|.|+- |... .+..
T Consensus 178 hvp~liigggtaAfaa~rai~s~da~A~vl~iseepelPYmRPPLSKELW~~~d-pn~~k~lrfkqwsGkeRsiffepd~ 256 (659)
T KOG1346|consen 178 HVPYLIIGGGTAAFAAFRAIKSNDATAKVLMISEEPELPYMRPPLSKELWWYGD-PNSAKKLRFKQWSGKERSIFFEPDG 256 (659)
T ss_pred cCceeEEcCCchhhhcccccccCCCCceEEeeccCccCcccCCCcchhceecCC-CChhhheeecccCCccceeEecCCc
Confidence 45689999999999998888887788899999766542 2 2444443 2110 0011
Q ss_pred HHHHHHH--hhcCCCcEEEceEEEE-E-----Eeeeccccc-ccCEEEEeeCCCCCCCCC-CCCCCCCCeeecccccccc
Q psy4525 68 VINTFTK--TGDNPRVNFYGNICLG-Q-----DISLGDLTN-AYHAVVLTYGADNDKKLN-IPGEDGKNIISARSFVGWY 137 (388)
Q Consensus 68 ~~~~~~~--~~~~~~i~~~~~~~v~-~-----~~~~~~~~~-~yd~lvlAtG~~~~~~~~-i~g~~~~~v~~~~~~~~~~ 137 (388)
+.-.-++ ...+-|+-+..+..+. . .+.+.++.. .||+++||||..|. .+. +... .+.+. +-...+
T Consensus 257 FfvspeDLp~~~nGGvAvl~G~kvvkid~~d~~V~LnDG~~I~YdkcLIATG~~Pk-~l~~~~~A-~~evk---~kit~f 331 (659)
T KOG1346|consen 257 FFVSPEDLPKAVNGGVAVLRGRKVVKIDEEDKKVILNDGTTIGYDKCLIATGVRPK-KLQVFEEA-SEEVK---QKITYF 331 (659)
T ss_pred ceeChhHCcccccCceEEEeccceEEeecccCeEEecCCcEeehhheeeecCcCcc-cchhhhhc-CHHhh---hheeEE
Confidence 1100111 1223355555443332 1 255666544 89999999999884 443 3211 11110 000111
Q ss_pred cCCCCccccCcC-CCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHH
Q psy4525 138 NGLPEDASLDLS-LDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKE 216 (388)
Q Consensus 138 ~~~~~~~~~~~~-~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~e 216 (388)
....++..+... ..-+.|.|||+|+.|-|+|..|.+ ..+..+ .+|+-+.....-+.
T Consensus 332 r~p~DF~rlek~~aek~siTIiGnGflgSELacsl~r----------------k~r~~g-~eV~QvF~Ek~nm~------ 388 (659)
T KOG1346|consen 332 RYPADFKRLEKGLAEKQSITIIGNGFLGSELACSLKR----------------KYRNEG-VEVHQVFEEKYNME------ 388 (659)
T ss_pred ecchHHHHHHHhhhhcceEEEEcCcchhhhHHHHHHH----------------hhhccC-cEEEEeecccCChh------
Confidence 111122222111 123789999999999999998861 112233 35766543322111
Q ss_pred HHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEE
Q psy4525 217 FREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGIN 296 (388)
Q Consensus 217 l~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~ 296 (388)
..|.++++++......+.||.++.+..+..+.... +++ .++
T Consensus 389 -------------------------------------kiLPeyls~wt~ekir~~GV~V~pna~v~sv~~~~-~nl-~lk 429 (659)
T KOG1346|consen 389 -------------------------------------KILPEYLSQWTIEKIRKGGVDVRPNAKVESVRKCC-KNL-VLK 429 (659)
T ss_pred -------------------------------------hhhHHHHHHHHHHHHHhcCceeccchhhhhhhhhc-cce-EEE
Confidence 11111111111112347899999998888776432 221 232
Q ss_pred EccCccccCCceeEEecceEEEccccCCccC---CCCCcccCCC-ccccCCCCCCeecchhhHHhHHHHHHccccCCCCc
Q psy4525 297 FANQQALVTEDTELIPSGIAFRSIGYQSRCV---DSDIPFNEKS-CTVIPKEGVPVVTWEGWKAIDKEETERGKLKGKPR 372 (388)
Q Consensus 297 ~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~---~~~l~~~~~~-gi~l~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~ 372 (388)
..+|.++.+|+||+|+|-.||.. .++|.+|+.. |..+|..=- ..-+.|.+.|++--.-|. .|+.|
T Consensus 430 --------L~dG~~l~tD~vVvavG~ePN~ela~~sgLeiD~~lGGfrvnaeL~--ar~NvwvAGdaacF~D~~-LGrRR 498 (659)
T KOG1346|consen 430 --------LSDGSELRTDLVVVAVGEEPNSELAEASGLEIDEKLGGFRVNAELK--ARENVWVAGDAACFEDGV-LGRRR 498 (659)
T ss_pred --------ecCCCeeeeeeEEEEecCCCchhhcccccceeecccCcEEeeheee--cccceeeecchhhhhccc-cccee
Confidence 46677999999999999999985 3677777654 566654321 345788888877666543 67666
Q ss_pred cccCCH
Q psy4525 373 EKIISI 378 (388)
Q Consensus 373 ~k~~~~ 378 (388)
--+-++
T Consensus 499 Vehhdh 504 (659)
T KOG1346|consen 499 VEHHDH 504 (659)
T ss_pred cccccc
Confidence 554443
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.2e-10 Score=111.71 Aligned_cols=39 Identities=26% Similarity=0.463 Sum_probs=33.8
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
++|+||||||+|+++|..|.+.....+|+|||+...+|.
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G~ 40 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAGV 40 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCCc
Confidence 689999999999999999988444579999999877773
|
|
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.3e-09 Score=98.41 Aligned_cols=40 Identities=28% Similarity=0.322 Sum_probs=38.1
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
.++++|||||+||++||..|+. .|++|+++|+++.+||.+
T Consensus 124 ~~svLVIGGGvAGitAAl~La~--~G~~v~LVEKepsiGGrm 163 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELAD--MGFKVYLVEKEPSIGGRM 163 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHHH--cCCeEEEEecCCcccccH
Confidence 4789999999999999999999 999999999999999976
|
|
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=99.13 E-value=7.8e-09 Score=99.15 Aligned_cols=45 Identities=29% Similarity=0.403 Sum_probs=36.7
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCC-CcEEEEcCCCCCCCceeeC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQ-STVDIYEKLPVPFGLVRYG 57 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g-~~v~lie~~~~~gg~~~~g 57 (388)
+++|+|||+|++|+..|.+|.+.... ..|.|||+.+.+|+-+.|.
T Consensus 1 ~~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~GiaYs 46 (474)
T COG4529 1 MFKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIAYS 46 (474)
T ss_pred CceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCccCC
Confidence 36899999999999999999986432 3499999999888666553
|
|
| >KOG2755|consensus | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.2e-10 Score=102.07 Aligned_cols=162 Identities=21% Similarity=0.255 Sum_probs=96.7
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCc----------EEE
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRV----------NFY 84 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i----------~~~ 84 (388)
+.+|||||.||.+||..|+...+..+|+++..++.+-..-+| ..+. ++++++.+ +|.
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~vksvtn~---------~~i~----~ylekfdv~eq~~~elg~~f~ 67 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVKSVTNY---------QKIG----QYLEKFDVKEQNCHELGPDFR 67 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHHHHhhH---------HHHH----HHHHhcCccccchhhhcccHH
Confidence 368999999999999999998788999999877543211111 0111 11111111 111
Q ss_pred --ceEEE-----EEEeeecccc-cccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEE
Q psy4525 85 --GNICL-----GQDISLGDLT-NAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEAT 156 (388)
Q Consensus 85 --~~~~v-----~~~~~~~~~~-~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vv 156 (388)
.+..+ ...+.++.+. ..|++|++|||+.|. +-..|.+ +.|..-++-..... + . ....+.|.|.
T Consensus 68 ~~~~~v~~~~s~ehci~t~~g~~~ky~kKOG~tg~kPk--lq~E~~n-~~Iv~irDtDsaQl-l-q----~kl~kaK~Vl 138 (334)
T KOG2755|consen 68 RFLNDVVTWDSSEHCIHTQNGEKLKYFKLCLCTGYKPK--LQVEGIN-PKIVGIRDTDSAQL-L-Q----CKLVKAKIVL 138 (334)
T ss_pred HHHHhhhhhccccceEEecCCceeeEEEEEEecCCCcc--eeecCCC-ceEEEEecCcHHHH-H-H----HHHhhcceEE
Confidence 00000 0123334443 489999999999873 3344422 33333322211000 0 0 1234579999
Q ss_pred EEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHh
Q psy4525 157 ILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMT 221 (388)
Q Consensus 157 VIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~ 221 (388)
|+|.|-+++|++.+|. .-+|++....+.+...|.++-..++.
T Consensus 139 ilgnGgia~El~yElk-----------------------~~nv~w~ikd~~IsaTFfdpGaaef~ 180 (334)
T KOG2755|consen 139 ILGNGGIAMELTYELK-----------------------ILNVTWKIKDEGISATFFDPGAAEFY 180 (334)
T ss_pred EEecCchhHHHHHHhh-----------------------cceeEEEecchhhhhcccCccHHHHh
Confidence 9999999999999774 23699988888887777777666544
|
|
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.1e-11 Score=107.20 Aligned_cols=128 Identities=23% Similarity=0.324 Sum_probs=74.5
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCc-----c-hhHHH--H--HHHHhhcCCCcEEE
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHP-----E-VKNVI--N--TFTKTGDNPRVNFY 84 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~-----~-~~~~~--~--~~~~~~~~~~i~~~ 84 (388)
||+||||||||++||..|++ .+.+++++|+.+..... .... +... . ..... . .+.+.+...+++++
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~--~~~~v~ii~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 76 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELAR--PGAKVLIIEKSPGTPYN-SGCI-PSPLLVEIAPHRHEFLPARLFKLVDQLKNRGVEIR 76 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHH--TTSEEEEESSSSHHHHH-HSHH-HHHHHHHHHHHHHHHHHHHHGHHHHHHHHHTHEEE
T ss_pred CEEEEecHHHHHHHHHHHhc--CCCeEEEEecccccccc-cccc-cccccccccccccccccccccccccccccceEEEe
Confidence 69999999999999999998 99999999887543211 0000 1000 0 00111 1 33333445677775
Q ss_pred ceEEE-EEEe----------e-----e-cccccccCEEEEeeCCCCCCCCCCCCCC----CCCeeecccccccccCCCCc
Q psy4525 85 GNICL-GQDI----------S-----L-GDLTNAYHAVVLTYGADNDKKLNIPGED----GKNIISARSFVGWYNGLPED 143 (388)
Q Consensus 85 ~~~~v-~~~~----------~-----~-~~~~~~yd~lvlAtG~~~~~~~~i~g~~----~~~v~~~~~~~~~~~~~~~~ 143 (388)
.+..+ ..+. . . +..+..||+||+|||+.+ +.+++||.+ ...+.++..+...
T Consensus 77 ~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~~-~~~~i~g~~~~~~~~~~~~~~~~~~~------- 148 (201)
T PF07992_consen 77 LNAKVVSIDPESKRVVCPAVTIQVVETGDGREIKYDYLVIATGSRP-RTPNIPGEEVAYFLRGVDDAQRFLEL------- 148 (201)
T ss_dssp HHHTEEEEEESTTEEEETCEEEEEEETTTEEEEEEEEEEEESTEEE-EEESSTTTTTECBTTSEEHHHHHHTH-------
T ss_pred eccccccccccccccccCcccceeeccCCceEecCCeeeecCcccc-ceeecCCCcccccccccccccccccc-------
Confidence 43332 1110 0 1 112248999999999886 577888863 1234444444322
Q ss_pred cccCcCCCCCeEEEEc
Q psy4525 144 ASLDLSLDCEEATILG 159 (388)
Q Consensus 144 ~~~~~~~~~~~vvVIG 159 (388)
...+++++|||
T Consensus 149 -----~~~~~~v~VvG 159 (201)
T PF07992_consen 149 -----LESPKRVAVVG 159 (201)
T ss_dssp -----SSTTSEEEEES
T ss_pred -----ccccccccccc
Confidence 12245999999
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.7e-09 Score=99.90 Aligned_cols=100 Identities=19% Similarity=0.266 Sum_probs=72.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC--------ceeeC---CC-------C-------------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG--------LVRYG---VA-------P------------- 60 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg--------~~~~g---~~-------p------------- 60 (388)
..++|+|||||||||.||..+.+ .|.+|+|||+.+.+|- .|+.. .+ |
T Consensus 2 ~~~dviIIGgGpAGlMaA~~aa~--~G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~~~~~ls~~p~~~~fl~sal~~f 79 (408)
T COG2081 2 ERFDVIIIGGGPAGLMAAISAAK--AGRRVLLIDKGPKLGRKILMSGGGRCNFTNSEAPDEFLSRNPGNGHFLKSALARF 79 (408)
T ss_pred CcceEEEECCCHHHHHHHHHHhh--cCCEEEEEecCccccceeEecCCCCccccccccHHHHHHhCCCcchHHHHHHHhC
Confidence 45799999999999999999999 9999999999988763 22110 00 1
Q ss_pred --------------------------CCcchhHHHHHHHHhhcCCCcEEEceEEEEE--------Eeeeccc-ccccCEE
Q psy4525 61 --------------------------DHPEVKNVINTFTKTGDNPRVNFYGNICLGQ--------DISLGDL-TNAYHAV 105 (388)
Q Consensus 61 --------------------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~--------~~~~~~~-~~~yd~l 105 (388)
.......+.+.+...+++.|++++.++.+.. .+++.+. ...+|.|
T Consensus 80 t~~d~i~~~e~~Gi~~~e~~~Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~~d~l 159 (408)
T COG2081 80 TPEDFIDWVEGLGIALKEEDLGRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVKCDSL 159 (408)
T ss_pred CHHHHHHHHHhcCCeeEEccCceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEEccEE
Confidence 1112456777777778888999998888742 1344444 3589999
Q ss_pred EEeeCCCC
Q psy4525 106 VLTYGADN 113 (388)
Q Consensus 106 vlAtG~~~ 113 (388)
|||||..+
T Consensus 160 ilAtGG~S 167 (408)
T COG2081 160 ILATGGKS 167 (408)
T ss_pred EEecCCcC
Confidence 99999544
|
|
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.6e-09 Score=103.54 Aligned_cols=98 Identities=18% Similarity=0.205 Sum_probs=56.9
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC--------CceeeC---C-----------C------------
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF--------GLVRYG---V-----------A------------ 59 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g--------g~~~~g---~-----------~------------ 59 (388)
+||+|||||||||.||..+++ .|.+|+|+|+++.+| |.++.. . .
T Consensus 1 ydviIIGgGaAGl~aA~~aa~--~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f~ 78 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAE--KGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRFS 78 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHH--TT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS-
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcCC
Confidence 689999999999999999999 899999999998775 333110 0 0
Q ss_pred ------------------------CCCcchhHHHHHHHHhhcCCCcEEEceEEEEEE---------eee-cccccccCEE
Q psy4525 60 ------------------------PDHPEVKNVINTFTKTGDNPRVNFYGNICLGQD---------ISL-GDLTNAYHAV 105 (388)
Q Consensus 60 ------------------------p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~---------~~~-~~~~~~yd~l 105 (388)
|......++.+.+...+++.++++++++.|... +.. ......+|+|
T Consensus 79 ~~d~~~ff~~~Gv~~~~~~~gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~v 158 (409)
T PF03486_consen 79 PEDLIAFFEELGVPTKIEEDGRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAV 158 (409)
T ss_dssp HHHHHHHHHHTT--EEE-STTEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEE
T ss_pred HHHHHHHHHhcCCeEEEcCCCEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEE
Confidence 111124566677777778889999988887422 333 2233478999
Q ss_pred EEeeCCCC
Q psy4525 106 VLTYGADN 113 (388)
Q Consensus 106 vlAtG~~~ 113 (388)
|||||..+
T Consensus 159 ILAtGG~S 166 (409)
T PF03486_consen 159 ILATGGKS 166 (409)
T ss_dssp EE----SS
T ss_pred EEecCCCC
Confidence 99999765
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1.3e-08 Score=75.57 Aligned_cols=79 Identities=18% Similarity=0.250 Sum_probs=58.3
Q ss_pred eEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEeccc
Q psy4525 154 EATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNE 233 (388)
Q Consensus 154 ~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~ 233 (388)
+++|||||++|+|+|..|+ ..+ .+||++.|++.+. +..+++++
T Consensus 1 ~vvViGgG~ig~E~A~~l~--------------------~~g-~~vtli~~~~~~~-~~~~~~~~--------------- 43 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALA--------------------ELG-KEVTLIERSDRLL-PGFDPDAA--------------- 43 (80)
T ss_dssp EEEEESSSHHHHHHHHHHH--------------------HTT-SEEEEEESSSSSS-TTSSHHHH---------------
T ss_pred CEEEECcCHHHHHHHHHHH--------------------HhC-cEEEEEeccchhh-hhcCHHHH---------------
Confidence 6899999999999999886 233 5899999999876 43333332
Q ss_pred ccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEcc
Q psy4525 234 QLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFAN 299 (388)
Q Consensus 234 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~ 299 (388)
+.+.+.+. +.||++++++.++++..++++ +. +++.+
T Consensus 44 ----------------~~~~~~l~------------~~gV~v~~~~~v~~i~~~~~~-~~-V~~~~ 79 (80)
T PF00070_consen 44 ----------------KILEEYLR------------KRGVEVHTNTKVKEIEKDGDG-VE-VTLED 79 (80)
T ss_dssp ----------------HHHHHHHH------------HTTEEEEESEEEEEEEEETTS-EE-EEEET
T ss_pred ----------------HHHHHHHH------------HCCCEEEeCCEEEEEEEeCCE-EE-EEEec
Confidence 22233333 579999999999999987666 66 77644
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=9.3e-08 Score=87.29 Aligned_cols=99 Identities=23% Similarity=0.298 Sum_probs=67.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-ee--------------------CCCCCC--------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RY--------------------GVAPDH-------- 62 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~--------------------g~~p~~-------- 62 (388)
..+||+||||||||++||..|++ .|++|+|+|+.+.+||.+ .- ++ |..
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~--~G~~V~liEk~~~~Ggg~~~gg~~~~~~~v~~~~~~~l~~~gv-~~~~~~~g~~~ 100 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAK--AGLKVAVFERKLSFGGGMWGGGMLFNKIVVQEEADEILDEFGI-RYKEVEDGLYV 100 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHh--CCCeEEEEecCCCCCCccccCccccccccchHHHHHHHHHCCC-CceeecCccee
Confidence 35799999999999999999999 999999999998876532 11 11 100
Q ss_pred cchhHHHHHHHHhhcCCCcEEEceEEEEEEeeecc----------------------cccccCEEEEeeCCCC
Q psy4525 63 PEVKNVINTFTKTGDNPRVNFYGNICLGQDISLGD----------------------LTNAYHAVVLTYGADN 113 (388)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~~~~~~----------------------~~~~yd~lvlAtG~~~ 113 (388)
....++...+.+.+.+.|++++.++.+..-...++ ....++.||.|||+..
T Consensus 101 vd~~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a 173 (257)
T PRK04176 101 ADSVEAAAKLAAAAIDAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDA 173 (257)
T ss_pred ccHHHHHHHHHHHHHHcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCc
Confidence 12345566677777778998887766532111000 1125789999999755
|
|
| >PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.4e-07 Score=89.19 Aligned_cols=34 Identities=26% Similarity=0.325 Sum_probs=31.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
.+||+|||+|++|+.+|..+.+ .|.+|++||+..
T Consensus 2 ~~DviIIG~G~aGl~aA~~la~--~g~~v~vi~~~~ 35 (422)
T PRK05329 2 KFDVLVIGGGLAGLTAALAAAE--AGKRVALVAKGQ 35 (422)
T ss_pred CCCEEEECccHHHHHHHHHHHH--CCCcEEEEECCC
Confidence 4799999999999999999999 899999999863
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.7e-07 Score=91.32 Aligned_cols=100 Identities=22% Similarity=0.267 Sum_probs=70.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceee-C-CC--------CCC-------------------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY-G-VA--------PDH------------------- 62 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~-g-~~--------p~~------------------- 62 (388)
..+||+||||||||++||..|++ .|++|+++|+.+.+|..... + +. |..
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~--~G~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~~i~~~v~~~~~~~~~~~ 79 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAK--AGLDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDEEIERKVTGARIYFPGEK 79 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHH--cCCeEEEEecCCCCCCCccccceechhhHHHhCCCcchhhheeeeeeEEEecCCc
Confidence 35899999999999999999999 89999999998877642211 0 00 000
Q ss_pred -----------c-chhHHHHHHHHhhcCCCcEEEceEEEEEEeeecc----------cccccCEEEEeeCCCC
Q psy4525 63 -----------P-EVKNVINTFTKTGDNPRVNFYGNICLGQDISLGD----------LTNAYHAVVLTYGADN 113 (388)
Q Consensus 63 -----------~-~~~~~~~~~~~~~~~~~i~~~~~~~v~~~~~~~~----------~~~~yd~lvlAtG~~~ 113 (388)
. ....+-+++.+.+.+.|.+++.++.+......++ .+..++.||.|+|+..
T Consensus 80 ~~~~~~~~~~y~v~R~~fd~~La~~A~~aGae~~~~~~~~~~~~~~~~~~~~~~~~~~e~~a~~vI~AdG~~s 152 (396)
T COG0644 80 VAIEVPVGEGYIVDRAKFDKWLAERAEEAGAELYPGTRVTGVIREDDGVVVGVRAGDDEVRAKVVIDADGVNS 152 (396)
T ss_pred eEEecCCCceEEEEhHHhhHHHHHHHHHcCCEEEeceEEEEEEEeCCcEEEEEEcCCEEEEcCEEEECCCcch
Confidence 0 1344556677788888999988877643322211 1347899999999765
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=98.58 E-value=4.2e-07 Score=82.73 Aligned_cols=75 Identities=20% Similarity=0.270 Sum_probs=54.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC-ceee--------------------CCCCCC--------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG-LVRY--------------------GVAPDH-------- 62 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg-~~~~--------------------g~~p~~-------- 62 (388)
..+||+||||||||++||..|++ .|.+|+|+|+.+.+|| .|.- ++ |..
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~--~G~~V~vlEk~~~~Ggg~~~gg~~~~~~~~~~~~~~~l~~~gi-~~~~~~~g~~~ 96 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAK--NGLKVCVLERSLAFGGGSWGGGMLFSKIVVEKPAHEILDEFGI-RYEDEGDGYVV 96 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCccccCCCcceecccccchHHHHHHHCCC-CeeeccCceEE
Confidence 46899999999999999999999 8999999999988753 2211 11 110
Q ss_pred cchhHHHHHHHHhhcCCCcEEEceEEE
Q psy4525 63 PEVKNVINTFTKTGDNPRVNFYGNICL 89 (388)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~i~~~~~~~v 89 (388)
....++...+.+.+.+.+++++.++.+
T Consensus 97 ~~~~el~~~L~~~a~e~GV~I~~~t~V 123 (254)
T TIGR00292 97 ADSAEFISTLASKALQAGAKIFNGTSV 123 (254)
T ss_pred eeHHHHHHHHHHHHHHcCCEEECCcEE
Confidence 012355566666677788888877665
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=98.50 E-value=5e-07 Score=84.01 Aligned_cols=98 Identities=16% Similarity=0.120 Sum_probs=65.7
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceee-------------------------------C---CC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY-------------------------------G---VA 59 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~-------------------------------g---~~ 59 (388)
+||+||||||+|+++|..|++ .|.+|+|+|+.+.++..+.. + ..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~--~g~~v~vie~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLAD--KGLRVLLLEKKSFPRYKPCGGALSPRVLEELDLPLELIVNLVRGARFFSPNGDSVEI 78 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCCCCcccccCccCHhHHHHhcCCchhhhhheeeEEEEcCCCcEEEe
Confidence 589999999999999999999 89999999998765421100 0 00
Q ss_pred --CCC----cchhHHHHHHHHhhcCCCcEEEceEEEEEE--------eeecc--cccccCEEEEeeCCCC
Q psy4525 60 --PDH----PEVKNVINTFTKTGDNPRVNFYGNICLGQD--------ISLGD--LTNAYHAVVLTYGADN 113 (388)
Q Consensus 60 --p~~----~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~--------~~~~~--~~~~yd~lvlAtG~~~ 113 (388)
+.. .....+...+.+.+.+.+++++.++.+... +.... ....+|+||+|+|...
T Consensus 79 ~~~~~~~~~i~r~~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 79 PIETELAYVIDRDAFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred ccCCCcEEEEEHHHHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence 000 123455566777777788988877665321 22221 2237899999999754
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.8e-07 Score=66.88 Aligned_cols=36 Identities=31% Similarity=0.392 Sum_probs=33.2
Q ss_pred EECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee
Q psy4525 18 IVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55 (388)
Q Consensus 18 IIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~ 55 (388)
|||||++||++|..|++ .+.+|+|+|+.+.+||.+.
T Consensus 1 IiGaG~sGl~aA~~L~~--~g~~v~v~E~~~~~GG~~~ 36 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAK--AGYRVTVFEKNDRLGGRAR 36 (68)
T ss_dssp EES-SHHHHHHHHHHHH--TTSEEEEEESSSSSSGGGC
T ss_pred CEeeCHHHHHHHHHHHH--CCCcEEEEecCcccCccee
Confidence 89999999999999999 8999999999999999874
|
... |
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=9.4e-07 Score=87.01 Aligned_cols=37 Identities=24% Similarity=0.186 Sum_probs=34.0
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
.+||+||||||||++||..|++ .|++|+|+|+.+.++
T Consensus 5 ~~DViIVGaGpAG~~aA~~La~--~G~~V~llEr~~~~g 41 (428)
T PRK10157 5 IFDAIIVGAGLAGSVAALVLAR--EGAQVLVIERGNSAG 41 (428)
T ss_pred cCcEEEECcCHHHHHHHHHHHh--CCCeEEEEEcCCCCC
Confidence 5899999999999999999999 899999999986654
|
|
| >PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.2e-06 Score=64.88 Aligned_cols=65 Identities=14% Similarity=0.122 Sum_probs=54.4
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
+|+|||||+.|+.+|..|.+ .+.+|+++++.+.+. .....+....+.+.+++.|+++++++.+..
T Consensus 1 ~vvViGgG~ig~E~A~~l~~--~g~~vtli~~~~~~~----------~~~~~~~~~~~~~~l~~~gV~v~~~~~v~~ 65 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAE--LGKEVTLIERSDRLL----------PGFDPDAAKILEEYLRKRGVEVHTNTKVKE 65 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHH--TTSEEEEEESSSSSS----------TTSSHHHHHHHHHHHHHTTEEEEESEEEEE
T ss_pred CEEEECcCHHHHHHHHHHHH--hCcEEEEEeccchhh----------hhcCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 58999999999999999999 899999999997753 123455677778888888999999988754
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A .... |
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.2e-06 Score=84.68 Aligned_cols=36 Identities=31% Similarity=0.372 Sum_probs=33.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
.+++|+||||||+|+++|..|++ .|++|+|+|+.+.
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~--~g~~v~v~E~~~~ 38 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRR--AGIAVDLVEIDPE 38 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCC
Confidence 35799999999999999999999 8999999998764
|
|
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=98.45 E-value=1e-06 Score=76.34 Aligned_cols=41 Identities=37% Similarity=0.495 Sum_probs=33.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
..+||+||||||||++||.+|++ .|++|.+||+...+||..
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~--~g~kV~v~E~~~~~GGg~ 56 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAK--AGLKVAVIERKLSPGGGM 56 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHH--HTS-EEEEESSSS-BTTT
T ss_pred ccCCEEEECCChhHHHHHHHHHH--CCCeEEEEecCCCCCccc
Confidence 35799999999999999999999 799999999998887543
|
|
| >COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.7e-06 Score=84.81 Aligned_cols=91 Identities=23% Similarity=0.233 Sum_probs=71.2
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
.-+++++|||||+.|+..|..+++ .|.+|||+|+.+.+- | ...+++.+.+.+.+++.++.++.++.+.
T Consensus 171 ~lP~~lvIiGgG~IGlE~a~~~~~--LG~~VTiie~~~~iL--------p--~~D~ei~~~~~~~l~~~gv~i~~~~~v~ 238 (454)
T COG1249 171 ELPKSLVIVGGGYIGLEFASVFAA--LGSKVTVVERGDRIL--------P--GEDPEISKELTKQLEKGGVKILLNTKVT 238 (454)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCCC--------C--cCCHHHHHHHHHHHHhCCeEEEccceEE
Confidence 457899999999999999999999 999999999997752 4 2456778888888888889999888764
Q ss_pred EE--------eeecccc---cccCEEEEeeCCCC
Q psy4525 91 QD--------ISLGDLT---NAYHAVVLTYGADN 113 (388)
Q Consensus 91 ~~--------~~~~~~~---~~yd~lvlAtG~~~ 113 (388)
.. +..++.. ..+|+|++|+|..|
T Consensus 239 ~~~~~~~~v~v~~~~g~~~~~~ad~vLvAiGR~P 272 (454)
T COG1249 239 AVEKKDDGVLVTLEDGEGGTIEADAVLVAIGRKP 272 (454)
T ss_pred EEEecCCeEEEEEecCCCCEEEeeEEEEccCCcc
Confidence 32 2222222 35999999999555
|
|
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.5e-06 Score=84.49 Aligned_cols=97 Identities=19% Similarity=0.273 Sum_probs=63.1
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCC-------------------------CCC-------
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVA-------------------------PDH------- 62 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~-------------------------p~~------- 62 (388)
||+||||||||+++|..|.+ .|.+|+|+|+.+..++...+++. +..
T Consensus 1 DviIiGaG~AGl~~A~~la~--~g~~v~liE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELAR--PGLRVQLIEPHPPIPGNHTYGVWDDDLSDLGLADCVEHVWPDVYEYRFPKQPRKLGTA 78 (388)
T ss_pred CEEEECCCHHHHHHHHHHHh--CCCeEEEEccCCCCCCCccccccHhhhhhhchhhHHhhcCCCceEEecCCcchhcCCc
Confidence 69999999999999999998 89999999998765542211110 100
Q ss_pred ---cchhHHHHHHHHhhcCCCcEEEceEEEEE--------Eeeeccc-ccccCEEEEeeCCCC
Q psy4525 63 ---PEVKNVINTFTKTGDNPRVNFYGNICLGQ--------DISLGDL-TNAYHAVVLTYGADN 113 (388)
Q Consensus 63 ---~~~~~~~~~~~~~~~~~~i~~~~~~~v~~--------~~~~~~~-~~~yd~lvlAtG~~~ 113 (388)
.....+.+.+.+.+.+.+++++....+.. .++..+. ...++.||.|+|..+
T Consensus 79 ~~~i~~~~l~~~l~~~~~~~gv~~~~~~v~~i~~~~~~~~~v~~~~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 79 YGSVDSTRLHEELLQKCPEGGVLWLERKAIHAEADGVALSTVYCAGGQRIQARLVIDARGFGP 141 (388)
T ss_pred eeEEcHHHHHHHHHHHHHhcCcEEEccEEEEEEecCCceeEEEeCCCCEEEeCEEEECCCCch
Confidence 11234555566666666777764433221 1223333 347899999999765
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.5e-06 Score=85.58 Aligned_cols=37 Identities=24% Similarity=0.207 Sum_probs=33.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
.+||+||||||||++||..|++ .|++|+++|+.+.+|
T Consensus 5 ~~DViIVGgGpAG~~aA~~LA~--~G~~VlliEr~~~~g 41 (429)
T PRK10015 5 KFDAIVVGAGVAGSVAALVMAR--AGLDVLVIERGDSAG 41 (429)
T ss_pred ccCEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCCCC
Confidence 5899999999999999999999 899999999986653
|
|
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.3e-06 Score=75.35 Aligned_cols=40 Identities=33% Similarity=0.465 Sum_probs=36.0
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC-ce
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG-LV 54 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg-~~ 54 (388)
..||+||||||+||+||.+|++ .|++|++||++-.+|| .|
T Consensus 30 esDViIVGaGPsGLtAAyyLAk--~g~kV~i~E~~ls~GGG~w 70 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAK--AGLKVAIFERKLSFGGGIW 70 (262)
T ss_pred hccEEEECcCcchHHHHHHHHh--CCceEEEEEeecccCCccc
Confidence 4699999999999999999999 8999999999988754 44
|
|
| >PRK12842 putative succinate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.6e-07 Score=90.92 Aligned_cols=40 Identities=33% Similarity=0.342 Sum_probs=36.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
..||||||+|+||++||..+++ .|.+|+|+|+.+..||..
T Consensus 9 ~~DVvVVG~G~aGl~AA~~aa~--~G~~v~llEk~~~~gG~~ 48 (574)
T PRK12842 9 TCDVLVIGSGAGGLSAAITARK--LGLDVVVLEKEPVFGGTT 48 (574)
T ss_pred CCCEEEECcCHHHHHHHHHHHH--cCCeEEEEecCCCCCCcc
Confidence 5799999999999999999999 899999999998887764
|
|
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=98.38 E-value=3e-06 Score=83.53 Aligned_cols=100 Identities=20% Similarity=0.210 Sum_probs=64.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC-----CCcee-----eCCC----------------------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP-----FGLVR-----YGVA---------------------- 59 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~-----gg~~~-----~g~~---------------------- 59 (388)
..+||+||||||||+++|..|.+ .|++|+++|+.+.. +|.|. .++.
T Consensus 27 ~~~DVvIVGaGpAGLalA~~La~--~Gl~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~~w~~~~v~~~~~~~~~~ 104 (447)
T PLN02463 27 RVVDLVVVGGGPAGLAVAQQVSE--AGLSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDTTWPGAVVYIDDGKKKDL 104 (447)
T ss_pred cCceEEEECCCHHHHHHHHHHHH--CCCeEEEeccCccchhccccchHHHHHHHCCcHHHHHhhCCCcEEEEeCCCCccc
Confidence 35799999999999999999999 89999999986532 23221 0000
Q ss_pred --CCC-cchhHHHHHHHHhhcCCCcEEEceEEEEE-------Eeeeccc-ccccCEEEEeeCCCC
Q psy4525 60 --PDH-PEVKNVINTFTKTGDNPRVNFYGNICLGQ-------DISLGDL-TNAYHAVVLTYGADN 113 (388)
Q Consensus 60 --p~~-~~~~~~~~~~~~~~~~~~i~~~~~~~v~~-------~~~~~~~-~~~yd~lvlAtG~~~ 113 (388)
|+. ....++.+.+.+.+.+.+++++....... .++..++ ...+|.||.|+|..+
T Consensus 105 ~~~y~~V~R~~L~~~Ll~~~~~~GV~~~~~~V~~I~~~~~~~~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 105 DRPYGRVNRKKLKSKMLERCIANGVQFHQAKVKKVVHEESKSLVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred cCcceeEEHHHHHHHHHHHHhhcCCEEEeeEEEEEEEcCCeEEEEECCCCEEEcCEEEECcCCCc
Confidence 000 12344555666666667888864322211 1333444 347899999999866
|
|
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.5e-06 Score=83.20 Aligned_cols=35 Identities=26% Similarity=0.221 Sum_probs=31.9
Q ss_pred EEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCc
Q psy4525 17 CIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGL 53 (388)
Q Consensus 17 vIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~ 53 (388)
+|||||+||++||..+++ .|.+|+|+|+.+.+|+.
T Consensus 1 vIIGgG~aGl~aAi~aa~--~G~~V~llEk~~~~G~k 35 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAAR--EGLSVLLLEKNKKIGKK 35 (400)
T ss_pred CEEEEeHHHHHHHHHHHh--cCCcEEEEecCcccccc
Confidence 699999999999999999 89999999999877653
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.6e-06 Score=79.22 Aligned_cols=39 Identities=41% Similarity=0.643 Sum_probs=34.6
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
..||+|||||++|+.||..|++. ++.+|+++|+...+||
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~-~g~kV~viEk~~~~GG 130 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKN-PNVKVAIIEQSVSPGG 130 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHc-CCCeEEEEecCccccc
Confidence 57999999999999999999962 4899999999987765
|
|
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.8e-06 Score=81.24 Aligned_cols=34 Identities=29% Similarity=0.446 Sum_probs=31.5
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
.+|+||||||||++||..|++ .|++|+|+|+.+.
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~--~G~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLAS--AGIQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHh--CCCcEEEEecCCC
Confidence 489999999999999999999 9999999998754
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.27 E-value=5.8e-06 Score=81.78 Aligned_cols=91 Identities=19% Similarity=0.223 Sum_probs=66.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++|+|||+|++|+.+|..+++ .|.+|+++++.+.+. |.. ..++.....+.+++.|++++.++.+..
T Consensus 156 ~~~~vvIIGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~l--------~~~--~~~~~~~~~~~l~~~GI~i~~~~~V~~ 223 (438)
T PRK07251 156 LPERLGIIGGGNIGLEFAGLYNK--LGSKVTVLDAASTIL--------PRE--EPSVAALAKQYMEEDGITFLLNAHTTE 223 (438)
T ss_pred cCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCccC--------CCC--CHHHHHHHHHHHHHcCCEEEcCCEEEE
Confidence 35799999999999999999999 899999999986642 221 234555566777788999998765532
Q ss_pred E--------eeecccccccCEEEEeeCCCCC
Q psy4525 92 D--------ISLGDLTNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~--------~~~~~~~~~yd~lvlAtG~~~~ 114 (388)
. +..++....||.||+|+|..|.
T Consensus 224 i~~~~~~v~v~~~g~~i~~D~viva~G~~p~ 254 (438)
T PRK07251 224 VKNDGDQVLVVTEDETYRFDALLYATGRKPN 254 (438)
T ss_pred EEecCCEEEEEECCeEEEcCEEEEeeCCCCC
Confidence 1 1112223479999999998774
|
|
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.2e-05 Score=80.39 Aligned_cols=36 Identities=31% Similarity=0.474 Sum_probs=32.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
..++|+||||||+|+++|..|++ .|++|+|+|+.+.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~--~G~~v~vlEr~~~ 37 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELAL--AGVDVAIVERRPN 37 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCC
Confidence 34799999999999999999999 8999999998754
|
|
| >PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.4e-06 Score=84.99 Aligned_cols=40 Identities=30% Similarity=0.329 Sum_probs=36.5
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
..||+|||+|++|+++|..+++ .|.+|+|+|+.+.+||..
T Consensus 7 ~~DvvVvG~G~aG~~aA~~aa~--~G~~v~llEk~~~~gG~~ 46 (557)
T PRK07843 7 EYDVVVVGSGAAGMVAALTAAH--RGLSTVVVEKAPHYGGST 46 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCCCccc
Confidence 5799999999999999999999 899999999998877654
|
|
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.5e-06 Score=85.53 Aligned_cols=40 Identities=30% Similarity=0.372 Sum_probs=33.2
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceee
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY 56 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~ 56 (388)
|||||||||||++||..+++ .|.+|+|+|+.+.+||....
T Consensus 1 DVVVvGgG~aG~~AAi~AAr--~G~~VlLiE~~~~lGG~~t~ 40 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAAR--AGAKVLLIEKGGFLGGMATS 40 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHH--TTS-EEEE-SSSSSTGGGGG
T ss_pred CEEEECccHHHHHHHHHHHH--CCCEEEEEECCccCCCcceE
Confidence 79999999999999999999 89999999999999987643
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=98.21 E-value=9.3e-06 Score=79.05 Aligned_cols=37 Identities=24% Similarity=0.367 Sum_probs=33.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
+..++|+||||||+|+++|..|++ .|++|+|+|+.+.
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~--~G~~v~liE~~~~ 40 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALAD--AGLSVALVEGREP 40 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhc--CCCEEEEEeCCCC
Confidence 455799999999999999999999 8999999999753
|
|
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.3e-05 Score=79.21 Aligned_cols=36 Identities=28% Similarity=0.371 Sum_probs=33.0
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
...+||+||||||||++||..|++ .|++|+|+|+.+
T Consensus 37 ~~~~DViIVGaGPAG~~aA~~LA~--~G~~VlllEr~~ 72 (450)
T PLN00093 37 GRKLRVAVIGGGPAGACAAETLAK--GGIETFLIERKL 72 (450)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHh--CCCcEEEEecCC
Confidence 346899999999999999999999 999999999874
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.4e-05 Score=77.84 Aligned_cols=32 Identities=22% Similarity=0.462 Sum_probs=30.6
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
+||+||||||||+++|..|++ .|++|+|+|+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~--~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLAR--AGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHh--CCCcEEEEECC
Confidence 589999999999999999999 89999999987
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00011 Score=71.26 Aligned_cols=33 Identities=27% Similarity=0.428 Sum_probs=30.6
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
+|++|||+|++|+++|..+.+ .+.+|+++|+..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~--~g~~v~lv~~~~ 33 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAE--AGKKCAIIAAGQ 33 (419)
T ss_pred CCEEEECchHHHHHHHHHHHH--CCCCEEEEeCCC
Confidence 489999999999999999999 899999999874
|
Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase. |
| >KOG0029|consensus | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.2e-06 Score=84.02 Aligned_cols=44 Identities=25% Similarity=0.219 Sum_probs=40.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceee
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY 56 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~ 56 (388)
..+++|+|||||+|||+||..|.+ .|++|+|+|..+.+||.+..
T Consensus 13 ~~~~~VIVIGAGiaGLsAArqL~~--~G~~V~VLEARdRvGGRI~t 56 (501)
T KOG0029|consen 13 GKKKKVIVIGAGLAGLSAARQLQD--FGFDVLVLEARDRVGGRIYT 56 (501)
T ss_pred cCCCcEEEECCcHHHHHHHHHHHH--cCCceEEEeccCCcCceeEE
Confidence 456899999999999999999999 99999999999999998743
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.3e-05 Score=80.75 Aligned_cols=36 Identities=33% Similarity=0.605 Sum_probs=33.0
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
..+|+||||||+|+++|..|++ .|++|+|+|+.+.+
T Consensus 3 ~~dVlIVGaGpaGl~~A~~La~--~Gi~v~viE~~~~~ 38 (502)
T PRK06184 3 TTDVLIVGAGPTGLTLAIELAR--RGVSFRLIEKAPEP 38 (502)
T ss_pred CCcEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCC
Confidence 4799999999999999999999 89999999987643
|
|
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.3e-05 Score=76.41 Aligned_cols=32 Identities=28% Similarity=0.485 Sum_probs=30.6
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
||+|||||++|+++|..|++ .|.+|+|+|+..
T Consensus 1 DvvIIGaGi~G~~~A~~La~--~G~~V~l~e~~~ 32 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELAR--RGHSVTLLERGD 32 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHH--TTSEEEEEESSS
T ss_pred CEEEECcCHHHHHHHHHHHH--CCCeEEEEeecc
Confidence 69999999999999999999 999999999983
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >PRK06912 acoL dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.8e-05 Score=78.72 Aligned_cols=91 Identities=19% Similarity=0.237 Sum_probs=67.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|++|+.+|..+.+ .|.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 169 ~~~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~~ll--------~~--~d~e~~~~l~~~L~~~GI~i~~~~~V~~ 236 (458)
T PRK06912 169 IPSSLLIVGGGVIGCEFASIYSR--LGTKVTIVEMAPQLL--------PG--EDEDIAHILREKLENDGVKIFTGAALKG 236 (458)
T ss_pred cCCcEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCcC--------cc--ccHHHHHHHHHHHHHCCCEEEECCEEEE
Confidence 35799999999999999999998 899999999886642 22 2345666677778888999998876532
Q ss_pred E------eee--ccc--ccccCEEEEeeCCCCC
Q psy4525 92 D------ISL--GDL--TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~------~~~--~~~--~~~yd~lvlAtG~~~~ 114 (388)
. +.. ++. ...+|.|++|+|..|.
T Consensus 237 i~~~~~~v~~~~~g~~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 237 LNSYKKQALFEYEGSIQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred EEEcCCEEEEEECCceEEEEeCEEEEecCCccC
Confidence 1 111 111 2479999999997763
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.2e-05 Score=78.53 Aligned_cols=35 Identities=23% Similarity=0.384 Sum_probs=31.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCC--CCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLP--QSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~--g~~v~lie~~~~ 49 (388)
.++|+||||||+|+++|..|++ . |++|+|+|+.+.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~--~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQ--AAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhc--CCCCCEEEEEeCCCc
Confidence 3689999999999999999999 6 499999998753
|
|
| >PRK05976 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.9e-05 Score=78.94 Aligned_cols=90 Identities=14% Similarity=0.110 Sum_probs=66.7
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQD 92 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~ 92 (388)
+++|+|||||++|+.+|..|++ .|.+|+++++.+.+. |.. ..++...+.+.+++.|++++.++.+...
T Consensus 180 ~~~vvIIGgG~~G~E~A~~l~~--~g~~Vtli~~~~~il--------~~~--~~~~~~~l~~~l~~~gI~i~~~~~v~~i 247 (472)
T PRK05976 180 PKSLVIVGGGVIGLEWASMLAD--FGVEVTVVEAADRIL--------PTE--DAELSKEVARLLKKLGVRVVTGAKVLGL 247 (472)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCeEEEEEecCccC--------CcC--CHHHHHHHHHHHHhcCCEEEeCcEEEEE
Confidence 5799999999999999999999 899999999886542 322 3445566667778889999988655321
Q ss_pred ----------eeeccc---ccccCEEEEeeCCCCC
Q psy4525 93 ----------ISLGDL---TNAYHAVVLTYGADND 114 (388)
Q Consensus 93 ----------~~~~~~---~~~yd~lvlAtG~~~~ 114 (388)
+...+. ...+|.||+|+|..|.
T Consensus 248 ~~~~~~~~~~~~~~~g~~~~i~~D~vi~a~G~~p~ 282 (472)
T PRK05976 248 TLKKDGGVLIVAEHNGEEKTLEADKVLVSVGRRPN 282 (472)
T ss_pred EEecCCCEEEEEEeCCceEEEEeCEEEEeeCCccC
Confidence 111122 2378999999998774
|
|
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.8e-05 Score=77.48 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=31.7
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
.++|+||||||+|+++|..|++ .|++|+|||+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~--~G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQG--SGLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhc--CCCEEEEEcCCC
Confidence 3699999999999999999999 899999999875
|
|
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.3e-05 Score=79.07 Aligned_cols=35 Identities=20% Similarity=0.172 Sum_probs=32.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
..+||+||||||||+.||..+++ .|.+|+++|+..
T Consensus 3 ~~yDVIVVGGGpAG~eAA~~aAR--~G~kV~LiE~~~ 37 (618)
T PRK05192 3 EEYDVIVVGGGHAGCEAALAAAR--MGAKTLLLTHNL 37 (618)
T ss_pred ccceEEEECchHHHHHHHHHHHH--cCCcEEEEeccc
Confidence 35899999999999999999999 899999999873
|
|
| >COG0579 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.11 E-value=3.3e-05 Score=74.81 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=36.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
.++||+|||||..|+++|..|.++.++.+|+|+||.+.++
T Consensus 2 ~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a 41 (429)
T COG0579 2 MDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVA 41 (429)
T ss_pred CceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccc
Confidence 4579999999999999999999976679999999998765
|
|
| >PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=2e-05 Score=76.33 Aligned_cols=92 Identities=15% Similarity=0.114 Sum_probs=66.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++++|||+|+.|+.+|..|.+ .+.+|+++++.+.+. +.. ........+.+.+++.|++++.++.+..
T Consensus 140 ~~~~vvViGgG~~g~e~A~~L~~--~g~~Vtlv~~~~~~l--------~~~-~~~~~~~~l~~~l~~~gV~i~~~~~v~~ 208 (377)
T PRK04965 140 DAQRVLVVGGGLIGTELAMDLCR--AGKAVTLVDNAASLL--------ASL-MPPEVSSRLQHRLTEMGVHLLLKSQLQG 208 (377)
T ss_pred cCCeEEEECCCHHHHHHHHHHHh--cCCeEEEEecCCccc--------chh-CCHHHHHHHHHHHHhCCCEEEECCeEEE
Confidence 45789999999999999999999 899999999886542 111 1234555666777788999987765532
Q ss_pred --------Eeeecccc-cccCEEEEeeCCCCC
Q psy4525 92 --------DISLGDLT-NAYHAVVLTYGADND 114 (388)
Q Consensus 92 --------~~~~~~~~-~~yd~lvlAtG~~~~ 114 (388)
.+...+.. ..+|.||+|+|..+.
T Consensus 209 i~~~~~~~~v~~~~g~~i~~D~vI~a~G~~p~ 240 (377)
T PRK04965 209 LEKTDSGIRATLDSGRSIEVDAVIAAAGLRPN 240 (377)
T ss_pred EEccCCEEEEEEcCCcEEECCEEEECcCCCcc
Confidence 12233332 379999999998763
|
|
| >PRK06416 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.3e-05 Score=78.10 Aligned_cols=91 Identities=19% Similarity=0.223 Sum_probs=67.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..|++ .|.+|+++++.+.+. |. ...++...+.+.+++.+++++.++.+..
T Consensus 171 ~~~~vvVvGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l--------~~--~~~~~~~~l~~~l~~~gV~i~~~~~V~~ 238 (462)
T PRK06416 171 VPKSLVVIGGGYIGVEFASAYAS--LGAEVTIVEALPRIL--------PG--EDKEISKLAERALKKRGIKIKTGAKAKK 238 (462)
T ss_pred cCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCCcC--------Cc--CCHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence 35799999999999999999999 899999999986642 32 2345566677778888999998866532
Q ss_pred E--------eeeccc----ccccCEEEEeeCCCCC
Q psy4525 92 D--------ISLGDL----TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~--------~~~~~~----~~~yd~lvlAtG~~~~ 114 (388)
. +...+. ...+|.||+|+|..|.
T Consensus 239 i~~~~~~v~v~~~~gg~~~~i~~D~vi~a~G~~p~ 273 (462)
T PRK06416 239 VEQTDDGVTVTLEDGGKEETLEADYVLVAVGRRPN 273 (462)
T ss_pred EEEeCCEEEEEEEeCCeeEEEEeCEEEEeeCCccC
Confidence 1 222221 2379999999998774
|
|
| >TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.9e-05 Score=78.56 Aligned_cols=91 Identities=20% Similarity=0.194 Sum_probs=67.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|++|+.+|..|++ .+.+|+++++.+.+. |. ...++...+.+.+++.+++++.++.+..
T Consensus 169 ~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~l--------~~--~~~~~~~~~~~~l~~~gi~i~~~~~v~~ 236 (461)
T TIGR01350 169 VPESLVIIGGGVIGIEFASIFAS--LGSKVTVIEMLDRIL--------PG--EDAEVSKVVAKALKKKGVKILTNTKVTA 236 (461)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCCCCC--------CC--CCHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence 35799999999999999999999 899999999987643 22 2234555666777788999998866531
Q ss_pred ------E--eeeccc---ccccCEEEEeeCCCCC
Q psy4525 92 ------D--ISLGDL---TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ------~--~~~~~~---~~~yd~lvlAtG~~~~ 114 (388)
. +...+. ...+|.||+|+|..|.
T Consensus 237 i~~~~~~v~v~~~~g~~~~i~~D~vi~a~G~~p~ 270 (461)
T TIGR01350 237 VEKNDDQVVYENKGGETETLTGEKVLVAVGRKPN 270 (461)
T ss_pred EEEeCCEEEEEEeCCcEEEEEeCEEEEecCCccc
Confidence 1 222222 3479999999998774
|
The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide. |
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.9e-05 Score=77.92 Aligned_cols=100 Identities=15% Similarity=0.159 Sum_probs=62.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC---CCceee-----CCC--------------CC--------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP---FGLVRY-----GVA--------------PD-------- 61 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~---gg~~~~-----g~~--------------p~-------- 61 (388)
..+||+||||||||+++|..+++ .|++|+++|+.... +|.|.. ++. +.
T Consensus 107 ~~~DVvIVGaGPAGLalA~~Lak--~Gl~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w~~~~v~~~~~~~~~~~~ 184 (529)
T PLN02697 107 GTLDLVVIGCGPAGLALAAESAK--LGLNVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVWRDTIVYLDDDKPIMIGR 184 (529)
T ss_pred CcccEEEECcCHHHHHHHHHHHh--CCCcEEEecCcccCCCccccchhHHHhcCcHHHHHhhcCCcEEEecCCceeeccC
Confidence 35899999999999999999999 89999999975322 233311 100 00
Q ss_pred -C--cchhHHHHHHHHhhcCCCcEEEceEEEEEE--------eeecc-cccccCEEEEeeCCCC
Q psy4525 62 -H--PEVKNVINTFTKTGDNPRVNFYGNICLGQD--------ISLGD-LTNAYHAVVLTYGADN 113 (388)
Q Consensus 62 -~--~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~--------~~~~~-~~~~yd~lvlAtG~~~ 113 (388)
+ .....+.+.+.+.+.+.|++++........ +...+ ....++.||.|+|..+
T Consensus 185 ~Yg~V~R~~L~~~Ll~~a~~~GV~~~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 185 AYGRVSRTLLHEELLRRCVESGVSYLSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAAS 248 (529)
T ss_pred cccEEcHHHHHHHHHHHHHhcCCEEEeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcCh
Confidence 0 123345555666666678887433222111 11122 2347899999999866
|
|
| >PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.9e-05 Score=77.06 Aligned_cols=92 Identities=17% Similarity=0.188 Sum_probs=66.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++++|||+|+.|+.+|..|++ .|.+|+++++.+.+.+. .....+...+.+.+++.|++++.++.+..
T Consensus 143 ~~~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~~l~~---------~~~~~~~~~l~~~l~~~GV~i~~~~~V~~ 211 (396)
T PRK09754 143 PERSVVIVGAGTIGLELAASATQ--RRCKVTVIELAATVMGR---------NAPPPVQRYLLQRHQQAGVRILLNNAIEH 211 (396)
T ss_pred cCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCcchhh---------hcCHHHHHHHHHHHHHCCCEEEeCCeeEE
Confidence 35789999999999999999999 89999999988664311 11233455566667778999998766532
Q ss_pred E-------eeecccc-cccCEEEEeeCCCCC
Q psy4525 92 D-------ISLGDLT-NAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~-------~~~~~~~-~~yd~lvlAtG~~~~ 114 (388)
. +.+.+.+ ..+|.||+|+|..+.
T Consensus 212 i~~~~~~~v~l~~g~~i~aD~Vv~a~G~~pn 242 (396)
T PRK09754 212 VVDGEKVELTLQSGETLQADVVIYGIGISAN 242 (396)
T ss_pred EEcCCEEEEEECCCCEEECCEEEECCCCChh
Confidence 1 2233332 379999999998774
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.6e-05 Score=76.16 Aligned_cols=33 Identities=30% Similarity=0.320 Sum_probs=30.6
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
+||+||||||||+++|..|++ . ++|+++|+.+.
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~--~-~~V~liE~~~~ 34 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAG--K-MKVIAIDKKHQ 34 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhc--c-CCEEEEECCCc
Confidence 699999999999999999999 7 99999998763
|
|
| >PRK13512 coenzyme A disulfide reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.1e-05 Score=77.71 Aligned_cols=90 Identities=8% Similarity=0.092 Sum_probs=67.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE-
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ- 91 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~- 91 (388)
+++++|||||+.|+.+|..|++ .|.+|+++++.+.+. +. ...++...+.+.+++.|++++.+..+..
T Consensus 148 ~~~vvViGgG~ig~E~A~~l~~--~g~~Vtli~~~~~l~--------~~--~d~~~~~~l~~~l~~~gI~i~~~~~v~~i 215 (438)
T PRK13512 148 VDKALVVGAGYISLEVLENLYE--RGLHPTLIHRSDKIN--------KL--MDADMNQPILDELDKREIPYRLNEEIDAI 215 (438)
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCcEEEEecccccc--------hh--cCHHHHHHHHHHHHhcCCEEEECCeEEEE
Confidence 5799999999999999999999 899999999886542 11 2234566677778888999998776642
Q ss_pred ---Eeeeccc-ccccCEEEEeeCCCCC
Q psy4525 92 ---DISLGDL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ---~~~~~~~-~~~yd~lvlAtG~~~~ 114 (388)
.+...+. ...+|.|++|+|..+.
T Consensus 216 ~~~~v~~~~g~~~~~D~vl~a~G~~pn 242 (438)
T PRK13512 216 NGNEVTFKSGKVEHYDMIIEGVGTHPN 242 (438)
T ss_pred eCCEEEECCCCEEEeCEEEECcCCCcC
Confidence 2333332 2479999999998763
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=4e-05 Score=74.47 Aligned_cols=37 Identities=22% Similarity=0.509 Sum_probs=33.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
+..++|+|||||++|+++|..|++ .|++|+|+|+.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRR--AGWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCC
Confidence 456899999999999999999999 8999999998763
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.7e-05 Score=75.63 Aligned_cols=36 Identities=22% Similarity=0.502 Sum_probs=32.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
..++|+||||||+|+++|..|++ .|.+|+|||+.+.
T Consensus 6 ~~~dViIVGaG~~Gl~~A~~L~~--~G~~v~liE~~~~ 41 (388)
T PRK07494 6 EHTDIAVIGGGPAGLAAAIALAR--AGASVALVAPEPP 41 (388)
T ss_pred CCCCEEEECcCHHHHHHHHHHhc--CCCeEEEEeCCCC
Confidence 34799999999999999999999 8999999999754
|
|
| >PRK09564 coenzyme A disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.8e-05 Score=77.04 Aligned_cols=91 Identities=15% Similarity=0.155 Sum_probs=67.7
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQD 92 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~ 92 (388)
.++|+|||+|++|+.+|..+++ .|.+|+++++.+.+. |. ....++...+.+.+++.|++++.++.+...
T Consensus 149 ~~~vvVvGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~l--------~~-~~~~~~~~~l~~~l~~~gI~v~~~~~v~~i 217 (444)
T PRK09564 149 IKNIVIIGAGFIGLEAVEAAKH--LGKNVRIIQLEDRIL--------PD-SFDKEITDVMEEELRENGVELHLNEFVKSL 217 (444)
T ss_pred CCEEEEECCCHHHHHHHHHHHh--cCCcEEEEeCCcccC--------ch-hcCHHHHHHHHHHHHHCCCEEEcCCEEEEE
Confidence 5799999999999999999998 899999999876532 11 123456667777888889999988766421
Q ss_pred --------eeecccccccCEEEEeeCCCCC
Q psy4525 93 --------ISLGDLTNAYHAVVLTYGADND 114 (388)
Q Consensus 93 --------~~~~~~~~~yd~lvlAtG~~~~ 114 (388)
+..++....+|.+|+|+|..+.
T Consensus 218 ~~~~~~~~v~~~~~~i~~d~vi~a~G~~p~ 247 (444)
T PRK09564 218 IGEDKVEGVVTDKGEYEADVVIVATGVKPN 247 (444)
T ss_pred ecCCcEEEEEeCCCEEEcCEEEECcCCCcC
Confidence 1222333479999999997763
|
|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.6e-05 Score=76.09 Aligned_cols=28 Identities=29% Similarity=0.360 Sum_probs=25.3
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEE
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIY 44 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~li 44 (388)
||+|||||+||+.||..+++ .|.+|+|+
T Consensus 1 DViVVGgG~AG~eAA~aaAr--~G~~V~Li 28 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAAR--MGAKVLLI 28 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHH--TT--EEEE
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCCEEEE
Confidence 69999999999999999999 99999999
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >TIGR03385 CoA_CoA_reduc CoA-disulfide reductase | Back alignment and domain information |
|---|
Probab=98.04 E-value=3.1e-05 Score=76.36 Aligned_cols=92 Identities=14% Similarity=0.091 Sum_probs=66.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++|+|||+|++|+.+|..|++ .+.+|+++++.+.+.. +. ...++...+.+.+++.|++++.++.+..
T Consensus 136 ~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~~~-------~~--~~~~~~~~~~~~l~~~gV~v~~~~~v~~ 204 (427)
T TIGR03385 136 KVENVVIIGGGYIGIEMAEALRE--RGKNVTLIHRSERILN-------KL--FDEEMNQIVEEELKKHEINLRLNEEVDS 204 (427)
T ss_pred CCCeEEEECCCHHHHHHHHHHHh--CCCcEEEEECCcccCc-------cc--cCHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence 35799999999999999999999 8999999998865410 11 1234556667777888999987766532
Q ss_pred E------eeeccc-ccccCEEEEeeCCCCC
Q psy4525 92 D------ISLGDL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~------~~~~~~-~~~yd~lvlAtG~~~~ 114 (388)
. +...+. ...+|.||+|+|..+.
T Consensus 205 i~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 234 (427)
T TIGR03385 205 IEGEERVKVFTSGGVYQADMVILATGIKPN 234 (427)
T ss_pred EecCCCEEEEcCCCEEEeCEEEECCCccCC
Confidence 1 122222 3479999999998763
|
Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. |
| >PRK07208 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.02 E-value=7.9e-06 Score=81.77 Aligned_cols=43 Identities=40% Similarity=0.574 Sum_probs=39.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~ 55 (388)
+..++|+|||||++||+||..|.+ .|.+|+|+|+.+.+||.+.
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~--~g~~v~v~E~~~~~GG~~~ 44 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLK--RGYPVTVLEADPVVGGISR 44 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCceee
Confidence 345799999999999999999999 8999999999999999863
|
|
| >TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.3e-05 Score=75.79 Aligned_cols=90 Identities=14% Similarity=0.069 Sum_probs=67.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQD 92 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~ 92 (388)
+++++|||||+.|+.+|..|++ .|.+|+++++.+.+. +. ...++...+.+.+++.|++++.++.+...
T Consensus 166 ~~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~~il--------~~--~d~~~~~~~~~~l~~~gI~i~~~~~v~~i 233 (450)
T TIGR01421 166 PKRVVIVGAGYIAVELAGVLHG--LGSETHLVIRHERVL--------RS--FDSMISETITEEYEKEGINVHKLSKPVKV 233 (450)
T ss_pred CCeEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCCC--------cc--cCHHHHHHHHHHHHHcCCEEEcCCEEEEE
Confidence 5799999999999999999999 899999999886642 22 23445666777788889999987655321
Q ss_pred ---------eeeccc--ccccCEEEEeeCCCCC
Q psy4525 93 ---------ISLGDL--TNAYHAVVLTYGADND 114 (388)
Q Consensus 93 ---------~~~~~~--~~~yd~lvlAtG~~~~ 114 (388)
+...+. ...+|.|++|+|..|+
T Consensus 234 ~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn 266 (450)
T TIGR01421 234 EKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPN 266 (450)
T ss_pred EEeCCceEEEEECCCcEEEEcCEEEEeeCCCcC
Confidence 222223 2379999999998774
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria. |
| >PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.5e-05 Score=75.52 Aligned_cols=91 Identities=18% Similarity=0.207 Sum_probs=67.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..+.+ .+.+|+++++.+.+. |.. ..++...+.+.+++.|++++.++.+..
T Consensus 157 ~~~~v~ViGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l--------~~~--~~~~~~~l~~~l~~~gV~v~~~~~v~~ 224 (441)
T PRK08010 157 LPGHLGILGGGYIGVEFASMFAN--FGSKVTILEAASLFL--------PRE--DRDIADNIATILRDQGVDIILNAHVER 224 (441)
T ss_pred cCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCC--------CCc--CHHHHHHHHHHHHhCCCEEEeCCEEEE
Confidence 35799999999999999999999 899999999876542 322 344566677778888999998766532
Q ss_pred E--------eeecccccccCEEEEeeCCCCC
Q psy4525 92 D--------ISLGDLTNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~--------~~~~~~~~~yd~lvlAtG~~~~ 114 (388)
. +..++.+..+|.|++|+|..|.
T Consensus 225 i~~~~~~v~v~~~~g~i~~D~vl~a~G~~pn 255 (441)
T PRK08010 225 ISHHENQVQVHSEHAQLAVDALLIASGRQPA 255 (441)
T ss_pred EEEcCCEEEEEEcCCeEEeCEEEEeecCCcC
Confidence 1 1222233479999999998774
|
|
| >COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=98.01 E-value=7e-06 Score=82.12 Aligned_cols=42 Identities=24% Similarity=0.284 Sum_probs=38.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~ 55 (388)
+.+||||||||+.||+||..|++ .|++|+|+|+++.+||..+
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~--~G~~V~VlE~~~~~GG~a~ 43 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLAR--AGLKVTVLEKNDRVGGRAR 43 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHh--CCCEEEEEEecCCCCcceE
Confidence 35899999999999999999999 9999999999999999763
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.4e-05 Score=77.22 Aligned_cols=37 Identities=30% Similarity=0.398 Sum_probs=33.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
..++|+||||||+|+.+|..|++ .|.+|+|+|+.+.+
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar--~Gi~V~llEr~~~~ 40 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQL--CGLNTVIVDKSDGP 40 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHH--cCCCEEEEeCCCcc
Confidence 34799999999999999999999 89999999988653
|
|
| >TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.3e-05 Score=75.76 Aligned_cols=91 Identities=11% Similarity=0.077 Sum_probs=67.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..+++ .+.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 165 ~~~~vvVIGgG~~g~E~A~~l~~--~G~~Vtli~~~~~~l--------~~--~d~~~~~~l~~~l~~~gV~i~~~~~v~~ 232 (446)
T TIGR01424 165 LPKSILILGGGYIAVEFAGIWRG--LGVQVTLIYRGELIL--------RG--FDDDMRALLARNMEGRGIRIHPQTSLTS 232 (446)
T ss_pred cCCeEEEECCcHHHHHHHHHHHH--cCCeEEEEEeCCCCC--------cc--cCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 35789999999999999999998 899999999876542 22 2344556667777888999998765532
Q ss_pred E--------eeeccc-ccccCEEEEeeCCCCC
Q psy4525 92 D--------ISLGDL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~--------~~~~~~-~~~yd~lvlAtG~~~~ 114 (388)
. +...+. ...+|.||+|+|..|+
T Consensus 233 i~~~~~~~~v~~~~g~~i~~D~viva~G~~pn 264 (446)
T TIGR01424 233 ITKTDDGLKVTLSHGEEIVADVVLFATGRSPN 264 (446)
T ss_pred EEEcCCeEEEEEcCCcEeecCEEEEeeCCCcC
Confidence 1 222222 2479999999998763
|
The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria. |
| >COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.3e-05 Score=71.46 Aligned_cols=39 Identities=31% Similarity=0.435 Sum_probs=36.6
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
.+|+|||+|+||++||..|+. .|.+|+||||+.-+||.+
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~--aG~~vtV~eKg~GvGGRl 40 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALRE--AGREVTVFEKGRGVGGRL 40 (331)
T ss_pred CcEEEEccchHHHHHHHHHHh--cCcEEEEEEcCCCcccch
Confidence 479999999999999999999 999999999998888876
|
|
| >PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.4e-05 Score=76.01 Aligned_cols=91 Identities=12% Similarity=0.077 Sum_probs=67.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..+++ .|.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 174 ~~~~v~IiGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l--------~~--~d~~~~~~l~~~l~~~gI~v~~~~~v~~ 241 (461)
T PRK05249 174 LPRSLIIYGAGVIGCEYASIFAA--LGVKVTLINTRDRLL--------SF--LDDEISDALSYHLRDSGVTIRHNEEVEK 241 (461)
T ss_pred cCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCcC--------Cc--CCHHHHHHHHHHHHHcCCEEEECCEEEE
Confidence 35899999999999999999999 899999999986642 21 2344566677777778999987766532
Q ss_pred E--------eeeccc-ccccCEEEEeeCCCCC
Q psy4525 92 D--------ISLGDL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~--------~~~~~~-~~~yd~lvlAtG~~~~ 114 (388)
. +...+. ...+|.|++|+|..|.
T Consensus 242 i~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 273 (461)
T PRK05249 242 VEGGDDGVIVHLKSGKKIKADCLLYANGRTGN 273 (461)
T ss_pred EEEeCCeEEEEECCCCEEEeCEEEEeecCCcc
Confidence 1 222222 2479999999998774
|
|
| >TIGR02053 MerA mercuric reductase | Back alignment and domain information |
|---|
Probab=98.00 E-value=4.3e-05 Score=76.15 Aligned_cols=90 Identities=13% Similarity=0.189 Sum_probs=66.6
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQD 92 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~ 92 (388)
+++++|||+|++|+.+|..|++ .|.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+...
T Consensus 166 ~~~vvIIGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l--------~~--~d~~~~~~l~~~l~~~gV~i~~~~~V~~i 233 (463)
T TIGR02053 166 PESLAVIGGGAIGVELAQAFAR--LGSEVTILQRSDRLL--------PR--EEPEISAAVEEALAEEGIEVVTSAQVKAV 233 (463)
T ss_pred CCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCCcCC--------Cc--cCHHHHHHHHHHHHHcCCEEEcCcEEEEE
Confidence 4799999999999999999999 899999999886642 22 23345566677777889999988755311
Q ss_pred --------eeec---c-cccccCEEEEeeCCCCC
Q psy4525 93 --------ISLG---D-LTNAYHAVVLTYGADND 114 (388)
Q Consensus 93 --------~~~~---~-~~~~yd~lvlAtG~~~~ 114 (388)
+... + ....+|.||+|+|..|.
T Consensus 234 ~~~~~~~~v~~~~~~~~~~i~~D~ViiA~G~~p~ 267 (463)
T TIGR02053 234 SVRGGGKIITVEKPGGQGEVEADELLVATGRRPN 267 (463)
T ss_pred EEcCCEEEEEEEeCCCceEEEeCEEEEeECCCcC
Confidence 1221 1 12379999999998774
|
This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH. |
| >PRK06370 mercuric reductase; Validated | Back alignment and domain information |
|---|
Probab=97.98 E-value=4.3e-05 Score=76.18 Aligned_cols=91 Identities=19% Similarity=0.207 Sum_probs=67.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++|+|||+|+.|+.+|..+++ .|.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 170 ~~~~vvVIGgG~~g~E~A~~l~~--~G~~Vtli~~~~~~l--------~~--~~~~~~~~l~~~l~~~GV~i~~~~~V~~ 237 (463)
T PRK06370 170 LPEHLVIIGGGYIGLEFAQMFRR--FGSEVTVIERGPRLL--------PR--EDEDVAAAVREILEREGIDVRLNAECIR 237 (463)
T ss_pred cCCEEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCCCC--------cc--cCHHHHHHHHHHHHhCCCEEEeCCEEEE
Confidence 35899999999999999999999 899999999986653 22 2334556667777888999998765531
Q ss_pred E--------eeec--c--cccccCEEEEeeCCCCC
Q psy4525 92 D--------ISLG--D--LTNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~--------~~~~--~--~~~~yd~lvlAtG~~~~ 114 (388)
. +... + ....+|.||+|+|..|.
T Consensus 238 i~~~~~~~~v~~~~~~~~~~i~~D~Vi~A~G~~pn 272 (463)
T PRK06370 238 VERDGDGIAVGLDCNGGAPEITGSHILVAVGRVPN 272 (463)
T ss_pred EEEcCCEEEEEEEeCCCceEEEeCEEEECcCCCcC
Confidence 1 1111 1 12379999999998774
|
|
| >PRK11728 hydroxyglutarate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=4.7e-05 Score=74.20 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=32.6
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
+||+|||||.+|+++|..|+++.+|.+|+|+|+.+.+
T Consensus 3 ~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~ 39 (393)
T PRK11728 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGP 39 (393)
T ss_pred ccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcc
Confidence 6999999999999999999994349999999998543
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=97.98 E-value=4.2e-05 Score=64.35 Aligned_cols=33 Identities=24% Similarity=0.699 Sum_probs=28.6
Q ss_pred EEECccHHHHHHHHHHHhhC---CCCcEEEEcCCCC
Q psy4525 17 CIVGSGPAGFYCAQQILKLL---PQSTVDIYEKLPV 49 (388)
Q Consensus 17 vIIGaG~aGl~aA~~l~~~~---~g~~v~lie~~~~ 49 (388)
+|||+||+|++++..|.+.. ...+|+|||+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 59999999999999999963 4679999999654
|
|
| >PRK11883 protoporphyrinogen oxidase; Reviewed | Back alignment and domain information |
|---|
Probab=97.97 E-value=8.9e-06 Score=80.63 Aligned_cols=40 Identities=23% Similarity=0.349 Sum_probs=36.8
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCC--CcEEEEcCCCCCCCcee
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQ--STVDIYEKLPVPFGLVR 55 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g--~~v~lie~~~~~gg~~~ 55 (388)
++|+|||||+|||+||..|++ .| .+|+|+|+.+.+||.+.
T Consensus 1 ~~v~IVGaGiaGL~aA~~L~~--~G~~~~V~vlEa~~~~GGr~~ 42 (451)
T PRK11883 1 KKVAIIGGGITGLSAAYRLHK--KGPDADITLLEASDRLGGKIQ 42 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHH--hCCCCCEEEEEcCCCCcceEE
Confidence 479999999999999999999 67 89999999999999873
|
|
| >PRK08401 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=6.6e-05 Score=74.80 Aligned_cols=34 Identities=32% Similarity=0.255 Sum_probs=31.6
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
+||+|||+|.||++||..+++ .|.+|+|+|+.+.
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae--~G~~V~liek~~~ 35 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAK--KGFDVTIIGPGIK 35 (466)
T ss_pred CeEEEECccHHHHHHHHHHHH--CCCeEEEEeCCCC
Confidence 699999999999999999999 8999999999753
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.1e-05 Score=73.45 Aligned_cols=32 Identities=25% Similarity=0.413 Sum_probs=30.4
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
.+|+||||||+|+++|..|++ .|++|+|+|+.
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~--~G~~v~l~E~~ 33 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQ--KGIKTTIFESK 33 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHc--CCCeEEEecCC
Confidence 589999999999999999999 89999999976
|
|
| >PLN02507 glutathione reductase | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.7e-05 Score=75.85 Aligned_cols=90 Identities=13% Similarity=0.122 Sum_probs=67.1
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQD 92 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~ 92 (388)
+++|+|||+|+.|+.+|..+++ .|.+|+++++.+.+. +. ...++...+.+.+++.|++++.++.+...
T Consensus 203 ~k~vvVIGgG~ig~E~A~~l~~--~G~~Vtli~~~~~~l--------~~--~d~~~~~~l~~~l~~~GI~i~~~~~V~~i 270 (499)
T PLN02507 203 PKRAVVLGGGYIAVEFASIWRG--MGATVDLFFRKELPL--------RG--FDDEMRAVVARNLEGRGINLHPRTNLTQL 270 (499)
T ss_pred CCeEEEECCcHHHHHHHHHHHH--cCCeEEEEEecCCcC--------cc--cCHHHHHHHHHHHHhCCCEEEeCCEEEEE
Confidence 5799999999999999999999 899999999876532 21 23456666777778889999988665321
Q ss_pred --------eeeccc-ccccCEEEEeeCCCCC
Q psy4525 93 --------ISLGDL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 93 --------~~~~~~-~~~yd~lvlAtG~~~~ 114 (388)
+...+. ...+|.|++|+|..|.
T Consensus 271 ~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn 301 (499)
T PLN02507 271 TKTEGGIKVITDHGEEFVADVVLFATGRAPN 301 (499)
T ss_pred EEeCCeEEEEECCCcEEEcCEEEEeecCCCC
Confidence 222222 2479999999998774
|
|
| >PRK06116 glutathione reductase; Validated | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.9e-05 Score=74.87 Aligned_cols=91 Identities=15% Similarity=0.193 Sum_probs=67.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++|+|||+|+.|+.+|..|.+ .+.+|+++++.+.+. +. ...++...+.+.+++.|++++.++.+..
T Consensus 166 ~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~L~~~GV~i~~~~~V~~ 233 (450)
T PRK06116 166 LPKRVAVVGAGYIAVEFAGVLNG--LGSETHLFVRGDAPL--------RG--FDPDIRETLVEEMEKKGIRLHTNAVPKA 233 (450)
T ss_pred cCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEecCCCCc--------cc--cCHHHHHHHHHHHHHCCcEEECCCEEEE
Confidence 35799999999999999999999 899999999876532 21 2345666677778888999998776532
Q ss_pred E---------eeeccc-ccccCEEEEeeCCCCC
Q psy4525 92 D---------ISLGDL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~---------~~~~~~-~~~yd~lvlAtG~~~~ 114 (388)
. +...+. ...+|.||+|+|..|.
T Consensus 234 i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p~ 266 (450)
T PRK06116 234 VEKNADGSLTLTLEDGETLTVDCLIWAIGREPN 266 (450)
T ss_pred EEEcCCceEEEEEcCCcEEEeCEEEEeeCCCcC
Confidence 1 122222 2379999999997763
|
|
| >PRK06327 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.3e-05 Score=75.71 Aligned_cols=91 Identities=15% Similarity=0.251 Sum_probs=66.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++|+|||+|+.|+.+|..+++ .+.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 182 ~~~~vvVvGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l--------~~--~d~~~~~~~~~~l~~~gi~i~~~~~v~~ 249 (475)
T PRK06327 182 VPKKLAVIGAGVIGLELGSVWRR--LGAEVTILEALPAFL--------AA--ADEQVAKEAAKAFTKQGLDIHLGVKIGE 249 (475)
T ss_pred cCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEeCCCccC--------Cc--CCHHHHHHHHHHHHHcCcEEEeCcEEEE
Confidence 35799999999999999999999 899999999986542 21 1244556666677778999988765531
Q ss_pred --------Eeeecc-----cccccCEEEEeeCCCCC
Q psy4525 92 --------DISLGD-----LTNAYHAVVLTYGADND 114 (388)
Q Consensus 92 --------~~~~~~-----~~~~yd~lvlAtG~~~~ 114 (388)
.+...+ ....+|.|++|+|..|.
T Consensus 250 i~~~~~~v~v~~~~~~g~~~~i~~D~vl~a~G~~p~ 285 (475)
T PRK06327 250 IKTGGKGVSVAYTDADGEAQTLEVDKLIVSIGRVPN 285 (475)
T ss_pred EEEcCCEEEEEEEeCCCceeEEEcCEEEEccCCccC
Confidence 122111 12379999999998774
|
|
| >PRK07818 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.95 E-value=5.3e-05 Score=75.57 Aligned_cols=91 Identities=19% Similarity=0.188 Sum_probs=67.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..+++ .|.+|+++++.+.+. |.. ..++...+.+.+++.|++++.++.+..
T Consensus 171 ~~~~vvVIGgG~ig~E~A~~l~~--~G~~Vtlv~~~~~~l--------~~~--d~~~~~~l~~~l~~~gV~i~~~~~v~~ 238 (466)
T PRK07818 171 LPKSIVIAGAGAIGMEFAYVLKN--YGVDVTIVEFLDRAL--------PNE--DAEVSKEIAKQYKKLGVKILTGTKVES 238 (466)
T ss_pred CCCeEEEECCcHHHHHHHHHHHH--cCCeEEEEecCCCcC--------Ccc--CHHHHHHHHHHHHHCCCEEEECCEEEE
Confidence 35799999999999999999999 899999999876542 322 344566677778888999998876532
Q ss_pred E--------eeec--cc---ccccCEEEEeeCCCCC
Q psy4525 92 D--------ISLG--DL---TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~--------~~~~--~~---~~~yd~lvlAtG~~~~ 114 (388)
. +... +. ...+|.||+|+|..|+
T Consensus 239 i~~~~~~~~v~~~~~~g~~~~i~~D~vi~a~G~~pn 274 (466)
T PRK07818 239 IDDNGSKVTVTVSKKDGKAQELEADKVLQAIGFAPR 274 (466)
T ss_pred EEEeCCeEEEEEEecCCCeEEEEeCEEEECcCcccC
Confidence 1 1221 22 2379999999997764
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.9e-05 Score=83.36 Aligned_cols=36 Identities=31% Similarity=0.490 Sum_probs=31.8
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
.+|+||||||||+++|..|++..+|++|+|+|+.+.
T Consensus 1 m~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 1 MRIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred CeEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 379999999999999999999434899999999875
|
|
| >PRK14694 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.95 E-value=6.7e-05 Score=74.84 Aligned_cols=89 Identities=11% Similarity=0.092 Sum_probs=65.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQD 92 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~ 92 (388)
+++++|||+|+.|+.+|..|++ .+.+|+++++...+ |. ...++...+.+.+++.|++++.++.+...
T Consensus 178 ~~~vvViG~G~~G~E~A~~l~~--~g~~Vtlv~~~~~l---------~~--~~~~~~~~l~~~l~~~GI~v~~~~~v~~i 244 (468)
T PRK14694 178 PERLLVIGASVVALELAQAFAR--LGSRVTVLARSRVL---------SQ--EDPAVGEAIEAAFRREGIEVLKQTQASEV 244 (468)
T ss_pred CCeEEEECCCHHHHHHHHHHHH--cCCeEEEEECCCCC---------CC--CCHHHHHHHHHHHHhCCCEEEeCCEEEEE
Confidence 5799999999999999999999 89999999864221 21 23446667777788889999987665321
Q ss_pred --------eeecccccccCEEEEeeCCCCC
Q psy4525 93 --------ISLGDLTNAYHAVVLTYGADND 114 (388)
Q Consensus 93 --------~~~~~~~~~yd~lvlAtG~~~~ 114 (388)
+...+....+|.||+|+|..|.
T Consensus 245 ~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn 274 (468)
T PRK14694 245 DYNGREFILETNAGTLRAEQLLVATGRTPN 274 (468)
T ss_pred EEcCCEEEEEECCCEEEeCEEEEccCCCCC
Confidence 1222233579999999998774
|
|
| >COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.94 E-value=1.3e-05 Score=77.96 Aligned_cols=42 Identities=31% Similarity=0.445 Sum_probs=38.3
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~ 55 (388)
++|+|||||.|||+||.+|++..+..+++|||+++..||.+.
T Consensus 1 ~~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~ 42 (444)
T COG1232 1 MKIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLR 42 (444)
T ss_pred CeEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEE
Confidence 479999999999999999999655599999999999999984
|
|
| >COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.8e-05 Score=73.78 Aligned_cols=91 Identities=20% Similarity=0.210 Sum_probs=71.1
Q ss_pred CcEEEECccHHHHHHHHHHHhhCC-----------CCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcE
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLP-----------QSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVN 82 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~-----------g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~ 82 (388)
.+|+||||||.|+.+|-.|+.+.. ..+|+|+|+.+.+. |.+ .+++..+..+.+++.||+
T Consensus 156 lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~IL--------p~~--~~~l~~~a~~~L~~~GV~ 225 (405)
T COG1252 156 LTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRIL--------PMF--PPKLSKYAERALEKLGVE 225 (405)
T ss_pred eEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchhc--------cCC--CHHHHHHHHHHHHHCCCE
Confidence 479999999999999999887521 24899999997753 443 455777888889999999
Q ss_pred EEceEEEEE----Eeeecccc--cccCEEEEeeCCCCC
Q psy4525 83 FYGNICLGQ----DISLGDLT--NAYHAVVLTYGADND 114 (388)
Q Consensus 83 ~~~~~~v~~----~~~~~~~~--~~yd~lvlAtG~~~~ 114 (388)
++.++.|.. .++.++.. ..++.+|.|+|..++
T Consensus 226 v~l~~~Vt~v~~~~v~~~~g~~~I~~~tvvWaaGv~a~ 263 (405)
T COG1252 226 VLLGTPVTEVTPDGVTLKDGEEEIPADTVVWAAGVRAS 263 (405)
T ss_pred EEcCCceEEECCCcEEEccCCeeEecCEEEEcCCCcCC
Confidence 999988753 25555544 589999999998774
|
|
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.92 E-value=7e-05 Score=76.10 Aligned_cols=38 Identities=29% Similarity=0.424 Sum_probs=34.4
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
...++|+||||||+|+++|..|++ .|++|+|+|+.+.+
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~--~G~~v~v~Er~~~~ 45 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQ--YGVRVLVLERWPTL 45 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCC
Confidence 456899999999999999999999 89999999998653
|
|
| >PRK07845 flavoprotein disulfide reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.92 E-value=7.8e-05 Score=74.32 Aligned_cols=90 Identities=14% Similarity=0.124 Sum_probs=66.6
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQD 92 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~ 92 (388)
+++++|||+|+.|+.+|..|++ .+.+|+++++.+.+. |. ...+....+.+.+++.|++++.++.+...
T Consensus 177 ~~~vvVIGgG~ig~E~A~~l~~--~g~~Vtli~~~~~~l--------~~--~d~~~~~~l~~~L~~~gV~i~~~~~v~~v 244 (466)
T PRK07845 177 PEHLIVVGSGVTGAEFASAYTE--LGVKVTLVSSRDRVL--------PG--EDADAAEVLEEVFARRGMTVLKRSRAESV 244 (466)
T ss_pred CCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCcCC--------CC--CCHHHHHHHHHHHHHCCcEEEcCCEEEEE
Confidence 4789999999999999999999 899999999876542 22 13345566777788889999977654221
Q ss_pred --------eeeccc-ccccCEEEEeeCCCCC
Q psy4525 93 --------ISLGDL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 93 --------~~~~~~-~~~yd~lvlAtG~~~~ 114 (388)
+...+. ...+|.|++|+|..|+
T Consensus 245 ~~~~~~~~v~~~~g~~l~~D~vl~a~G~~pn 275 (466)
T PRK07845 245 ERTGDGVVVTLTDGRTVEGSHALMAVGSVPN 275 (466)
T ss_pred EEeCCEEEEEECCCcEEEecEEEEeecCCcC
Confidence 222222 2379999999998774
|
|
| >KOG2415|consensus | Back alignment and domain information |
|---|
Probab=97.90 E-value=2.1e-05 Score=74.06 Aligned_cols=43 Identities=33% Similarity=0.389 Sum_probs=37.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhC----CCCcEEEEcCCCCCCCce
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLL----PQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~----~g~~v~lie~~~~~gg~~ 54 (388)
...||+|||||||||+||++|++.. ..++|.++|+...+||..
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~Gght 121 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHT 121 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCce
Confidence 4579999999999999999999863 457899999999888754
|
|
| >PRK07846 mycothione reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.0001 Score=73.16 Aligned_cols=90 Identities=16% Similarity=0.115 Sum_probs=62.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..+++ .|.+|+++++.+.+. |. ...++...+.+.+ +.+++++.++.+..
T Consensus 165 ~~~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~~~ll--------~~--~d~~~~~~l~~l~-~~~v~i~~~~~v~~ 231 (451)
T PRK07846 165 LPESLVIVGGGFIAAEFAHVFSA--LGVRVTVVNRSGRLL--------RH--LDDDISERFTELA-SKRWDVRLGRNVVG 231 (451)
T ss_pred cCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCccc--------cc--cCHHHHHHHHHHH-hcCeEEEeCCEEEE
Confidence 35799999999999999999999 899999999986542 21 1233444444433 35688887765532
Q ss_pred --------Eeeeccc-ccccCEEEEeeCCCCC
Q psy4525 92 --------DISLGDL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 --------~~~~~~~-~~~yd~lvlAtG~~~~ 114 (388)
.+...+. ...+|.|++|+|..|.
T Consensus 232 i~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn 263 (451)
T PRK07846 232 VSQDGSGVTLRLDDGSTVEADVLLVATGRVPN 263 (451)
T ss_pred EEEcCCEEEEEECCCcEeecCEEEEEECCccC
Confidence 1222222 2379999999998774
|
|
| >TIGR00562 proto_IX_ox protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.5e-05 Score=79.31 Aligned_cols=43 Identities=26% Similarity=0.369 Sum_probs=37.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCC--CCcEEEEcCCCCCCCcee
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLP--QSTVDIYEKLPVPFGLVR 55 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~--g~~v~lie~~~~~gg~~~ 55 (388)
+++|+|||||+|||+||..|.+..+ |.+|+|+|+.+.+||.+.
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~ 46 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQ 46 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEE
Confidence 3689999999999999999999222 899999999999999873
|
This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end. |
| >PLN02576 protoporphyrinogen oxidase | Back alignment and domain information |
|---|
Probab=97.89 E-value=1.7e-05 Score=79.71 Aligned_cols=43 Identities=21% Similarity=0.225 Sum_probs=39.2
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCC-CCcEEEEcCCCCCCCcee
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLP-QSTVDIYEKLPVPFGLVR 55 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~-g~~v~lie~~~~~gg~~~ 55 (388)
...++|+|||||++||+||..|.+ . |.+|+|+|+.+.+||.+.
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~--~~g~~v~vlEa~~rvGGr~~ 53 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALAS--KHGVNVLVTEARDRVGGNIT 53 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHH--hcCCCEEEEecCCCCCCcee
Confidence 345799999999999999999999 7 899999999999999863
|
|
| >PRK06115 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.88 E-value=8.5e-05 Score=74.04 Aligned_cols=91 Identities=15% Similarity=0.158 Sum_probs=66.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++|+|||+|+.|+.+|..+.+ .|.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 173 ~~~~vvIIGgG~ig~E~A~~l~~--~G~~Vtlie~~~~il--------~~--~d~~~~~~l~~~l~~~gV~i~~~~~V~~ 240 (466)
T PRK06115 173 VPKHLVVIGAGVIGLELGSVWRR--LGAQVTVVEYLDRIC--------PG--TDTETAKTLQKALTKQGMKFKLGSKVTG 240 (466)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEeCCCCCC--------CC--CCHHHHHHHHHHHHhcCCEEEECcEEEE
Confidence 46899999999999999999999 899999999876642 32 2234556666777788999998765521
Q ss_pred E--------eeec---c---cccccCEEEEeeCCCCC
Q psy4525 92 D--------ISLG---D---LTNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~--------~~~~---~---~~~~yd~lvlAtG~~~~ 114 (388)
. +... + ....+|.|++|+|..|.
T Consensus 241 i~~~~~~v~v~~~~~~~g~~~~i~~D~vi~a~G~~pn 277 (466)
T PRK06115 241 ATAGADGVSLTLEPAAGGAAETLQADYVLVAIGRRPY 277 (466)
T ss_pred EEEcCCeEEEEEEEcCCCceeEEEeCEEEEccCCccc
Confidence 1 1111 1 12378999999998764
|
|
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=97.87 E-value=9e-05 Score=71.70 Aligned_cols=36 Identities=36% Similarity=0.616 Sum_probs=30.8
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
||+||||||||+++|..|.+...+.+|+|+|+.+..
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 799999999999999999332289999999987654
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >PRK13748 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=8.2e-05 Score=76.00 Aligned_cols=89 Identities=13% Similarity=0.109 Sum_probs=66.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQD 92 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~ 92 (388)
+++++|||+|+.|+.+|..|.+ .|.+|+++++...+ +. ...++...+.+.+++.|++++.++.+...
T Consensus 270 ~~~vvViGgG~ig~E~A~~l~~--~g~~Vtli~~~~~l---------~~--~d~~~~~~l~~~l~~~gI~i~~~~~v~~i 336 (561)
T PRK13748 270 PERLAVIGSSVVALELAQAFAR--LGSKVTILARSTLF---------FR--EDPAIGEAVTAAFRAEGIEVLEHTQASQV 336 (561)
T ss_pred CCeEEEECCCHHHHHHHHHHHH--cCCEEEEEecCccc---------cc--cCHHHHHHHHHHHHHCCCEEEcCCEEEEE
Confidence 5799999999999999999999 89999999975321 21 23456666777788889999987765321
Q ss_pred --------eeecccccccCEEEEeeCCCCC
Q psy4525 93 --------ISLGDLTNAYHAVVLTYGADND 114 (388)
Q Consensus 93 --------~~~~~~~~~yd~lvlAtG~~~~ 114 (388)
+...+....+|.|++|+|..|+
T Consensus 337 ~~~~~~~~v~~~~~~i~~D~vi~a~G~~pn 366 (561)
T PRK13748 337 AHVDGEFVLTTGHGELRADKLLVATGRAPN 366 (561)
T ss_pred EecCCEEEEEecCCeEEeCEEEEccCCCcC
Confidence 2222233478999999998774
|
|
| >KOG1335|consensus | Back alignment and domain information |
|---|
Probab=97.87 E-value=5.6e-05 Score=70.55 Aligned_cols=99 Identities=14% Similarity=0.166 Sum_probs=75.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
-+++++|||+|..||..+.-..+ .|.+||++|-.+.+++. ...++.+.+++.+.+.++.|++++.+..
T Consensus 210 vPk~~~viG~G~IGLE~gsV~~r--LGseVT~VEf~~~i~~~----------mD~Eisk~~qr~L~kQgikF~l~tkv~~ 277 (506)
T KOG1335|consen 210 VPKKLTVIGAGYIGLEMGSVWSR--LGSEVTVVEFLDQIGGV----------MDGEISKAFQRVLQKQGIKFKLGTKVTS 277 (506)
T ss_pred CcceEEEEcCceeeeehhhHHHh--cCCeEEEEEehhhhccc----------cCHHHHHHHHHHHHhcCceeEeccEEEE
Confidence 46899999999999999999999 89999999998887743 2345777888888889999999988742
Q ss_pred E---------eeeccc------ccccCEEEEeeCCCCCCCCCCCCCCCCC
Q psy4525 92 D---------ISLGDL------TNAYHAVVLTYGADNDKKLNIPGEDGKN 126 (388)
Q Consensus 92 ~---------~~~~~~------~~~yd~lvlAtG~~~~~~~~i~g~~~~~ 126 (388)
. +++.+. ....|.+++|+|.+| -..|+.++.
T Consensus 278 a~~~~dg~v~i~ve~ak~~k~~tle~DvlLVsiGRrP----~t~GLgle~ 323 (506)
T KOG1335|consen 278 ATRNGDGPVEIEVENAKTGKKETLECDVLLVSIGRRP----FTEGLGLEK 323 (506)
T ss_pred eeccCCCceEEEEEecCCCceeEEEeeEEEEEccCcc----cccCCChhh
Confidence 1 222211 126899999999655 345554433
|
|
| >PLN02268 probable polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.7e-05 Score=78.30 Aligned_cols=40 Identities=28% Similarity=0.375 Sum_probs=37.5
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~ 55 (388)
++|+|||||.|||+||..|.+ .|++|+|+|+.+.+||.+.
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~--~g~~v~vlEa~~r~GGri~ 40 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHD--ASFKVTLLESRDRIGGRVH 40 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCCCceee
Confidence 479999999999999999999 8999999999999999874
|
|
| >COG3349 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.87 E-value=1.7e-05 Score=77.26 Aligned_cols=41 Identities=29% Similarity=0.321 Sum_probs=38.3
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceee
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY 56 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~ 56 (388)
++|+|+|||.|||+||..|.+ .|++|||+|+.+.+||.+..
T Consensus 1 ~rVai~GaG~AgL~~a~~La~--~g~~vt~~ea~~~~GGk~~s 41 (485)
T COG3349 1 MRVAIAGAGLAGLAAAYELAD--AGYDVTLYEARDRLGGKVAS 41 (485)
T ss_pred CeEEEEcccHHHHHHHHHHHh--CCCceEEEeccCccCceeee
Confidence 589999999999999999999 99999999999999998743
|
|
| >PRK14727 putative mercuric reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00011 Score=73.59 Aligned_cols=89 Identities=15% Similarity=0.115 Sum_probs=65.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQD 92 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~ 92 (388)
+++++|||+|+.|+.+|..+.+ .|.+|+++++...+ +. ...++...+.+.+++.|++++.++.+...
T Consensus 188 ~k~vvVIGgG~iG~E~A~~l~~--~G~~Vtlv~~~~~l---------~~--~d~~~~~~l~~~L~~~GV~i~~~~~V~~i 254 (479)
T PRK14727 188 PASLTVIGSSVVAAEIAQAYAR--LGSRVTILARSTLL---------FR--EDPLLGETLTACFEKEGIEVLNNTQASLV 254 (479)
T ss_pred CCeEEEECCCHHHHHHHHHHHH--cCCEEEEEEcCCCC---------Cc--chHHHHHHHHHHHHhCCCEEEcCcEEEEE
Confidence 5799999999999999999999 89999999875211 21 23446667777788889999987665321
Q ss_pred --------eeecccccccCEEEEeeCCCCC
Q psy4525 93 --------ISLGDLTNAYHAVVLTYGADND 114 (388)
Q Consensus 93 --------~~~~~~~~~yd~lvlAtG~~~~ 114 (388)
+...+.+..+|.||+|+|..|.
T Consensus 255 ~~~~~~~~v~~~~g~i~aD~VlvA~G~~pn 284 (479)
T PRK14727 255 EHDDNGFVLTTGHGELRAEKLLISTGRHAN 284 (479)
T ss_pred EEeCCEEEEEEcCCeEEeCEEEEccCCCCC
Confidence 2222333478999999998774
|
|
| >PRK07233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=1.7e-05 Score=78.05 Aligned_cols=38 Identities=32% Similarity=0.428 Sum_probs=36.4
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
+|+|||||++||+||..|.+ .|++|+|+|+.+.+||.+
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~--~G~~v~vlE~~~~~GG~~ 38 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAK--RGHEVTVFEADDQLGGLA 38 (434)
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCcEEEEEeCCCCCCce
Confidence 68999999999999999999 899999999999999976
|
|
| >KOG3851|consensus | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00015 Score=66.23 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=34.0
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
+...+|+|||||.+|+..|..+.++...-+|.|+|....
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~ 75 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAED 75 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhh
Confidence 456899999999999999999999876778999997654
|
|
| >PTZ00318 NADH dehydrogenase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=9.9e-05 Score=72.68 Aligned_cols=91 Identities=15% Similarity=0.172 Sum_probs=67.3
Q ss_pred CcEEEECccHHHHHHHHHHHhhC------------CCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCc
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLL------------PQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRV 81 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~------------~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i 81 (388)
++++|||||++|+.+|..|.... ++.+|+++++.+.+. |. ....+.+...+.+++.|+
T Consensus 174 ~~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll--------~~--~~~~~~~~~~~~L~~~gV 243 (424)
T PTZ00318 174 LHFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVL--------GS--FDQALRKYGQRRLRRLGV 243 (424)
T ss_pred CEEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCccc--------cc--CCHHHHHHHHHHHHHCCC
Confidence 48999999999999999887531 368899999886542 22 234566777788888999
Q ss_pred EEEceEEEEE----Eeeecccc-cccCEEEEeeCCCCC
Q psy4525 82 NFYGNICLGQ----DISLGDLT-NAYHAVVLTYGADND 114 (388)
Q Consensus 82 ~~~~~~~v~~----~~~~~~~~-~~yd~lvlAtG~~~~ 114 (388)
+++.++.+.. .+.+.+++ ..+|.+|+|+|..++
T Consensus 244 ~v~~~~~v~~v~~~~v~~~~g~~i~~d~vi~~~G~~~~ 281 (424)
T PTZ00318 244 DIRTKTAVKEVLDKEVVLKDGEVIPTGLVVWSTGVGPG 281 (424)
T ss_pred EEEeCCeEEEEeCCEEEECCCCEEEccEEEEccCCCCc
Confidence 9998876642 24444443 389999999997663
|
|
| >TIGR01423 trypano_reduc trypanothione-disulfide reductase | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00012 Score=73.18 Aligned_cols=93 Identities=14% Similarity=0.039 Sum_probs=66.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhC-CCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLL-PQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~-~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
.+++++|||||+.|+.+|..+.... .|.+|+|+++.+.+. |. ...++...+.+.+++.|++++.++.+.
T Consensus 186 ~~~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~il--------~~--~d~~~~~~l~~~L~~~GI~i~~~~~v~ 255 (486)
T TIGR01423 186 PPRRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMIL--------RG--FDSTLRKELTKQLRANGINIMTNENPA 255 (486)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCccc--------cc--cCHHHHHHHHHHHHHcCCEEEcCCEEE
Confidence 3579999999999999998776521 489999999886642 22 234566677777888899999877543
Q ss_pred EE---------eeeccc-ccccCEEEEeeCCCCC
Q psy4525 91 QD---------ISLGDL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 91 ~~---------~~~~~~-~~~yd~lvlAtG~~~~ 114 (388)
.. +...+. ...+|.|++|+|..|+
T Consensus 256 ~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn 289 (486)
T TIGR01423 256 KVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPR 289 (486)
T ss_pred EEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcC
Confidence 21 222222 2479999999997764
|
Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase. |
| >COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=9.4e-05 Score=72.11 Aligned_cols=91 Identities=18% Similarity=0.151 Sum_probs=69.3
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE-E
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG-Q 91 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~-~ 91 (388)
.++++|||+|++|+.+|..+++ .|.+|+++|+.+.+++.... .++.+.+.+.++..+++++.+..+. .
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~--~G~~v~l~e~~~~~~~~~~~---------~~~~~~~~~~l~~~gi~~~~~~~~~~i 204 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAK--RGKKVTLIEAADRLGGQLLD---------PEVAEELAELLEKYGVELLLGTKVVGV 204 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHH--cCCeEEEEEcccccchhhhh---------HHHHHHHHHHHHHCCcEEEeCCceEEE
Confidence 4799999999999999999999 89999999999887644211 5567777888888889887766642 1
Q ss_pred E----------eeeccc-ccccCEEEEeeCCCCC
Q psy4525 92 D----------ISLGDL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~----------~~~~~~-~~~yd~lvlAtG~~~~ 114 (388)
+ ...... ...+|.+++++|..++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~p~ 238 (415)
T COG0446 205 EGKGNTLVVERVVGIDGEEIKADLVIIGPGERPN 238 (415)
T ss_pred EcccCcceeeEEEEeCCcEEEeeEEEEeeccccc
Confidence 1 122222 2379999999998873
|
|
| >PRK14989 nitrite reductase subunit NirD; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=9.6e-05 Score=78.45 Aligned_cols=92 Identities=12% Similarity=0.067 Sum_probs=67.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++++|||||+.|+.+|..|++ .|.+|+|+++.+.+. | .....+....+.+.+++.|++++.+..+..
T Consensus 144 ~~k~vvVIGgG~iGlE~A~~L~~--~G~~VtvVe~~~~ll--------~-~~ld~~~~~~l~~~L~~~GV~v~~~~~v~~ 212 (847)
T PRK14989 144 RSKRGAVVGGGLLGLEAAGALKN--LGVETHVIEFAPMLM--------A-EQLDQMGGEQLRRKIESMGVRVHTSKNTLE 212 (847)
T ss_pred cCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEeccccch--------h-hhcCHHHHHHHHHHHHHCCCEEEcCCeEEE
Confidence 45789999999999999999999 899999999876531 2 112344556677778888999998866532
Q ss_pred E----------eeecccc-cccCEEEEeeCCCCC
Q psy4525 92 D----------ISLGDLT-NAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~----------~~~~~~~-~~yd~lvlAtG~~~~ 114 (388)
. +...+.+ ..+|.||+|+|..|.
T Consensus 213 I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn 246 (847)
T PRK14989 213 IVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQ 246 (847)
T ss_pred EEecCCCceEEEEECCCCEEEcCEEEECCCcccC
Confidence 1 2222232 379999999998874
|
|
| >TIGR03452 mycothione_red mycothione reductase | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00017 Score=71.55 Aligned_cols=89 Identities=15% Similarity=0.138 Sum_probs=61.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQD 92 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~ 92 (388)
+++++|||+|+.|+.+|..|.+ .|.+|+++++.+.+. |. ...++...+.+..+ .+++++.+..+...
T Consensus 169 ~k~vvVIGgG~ig~E~A~~l~~--~G~~Vtli~~~~~ll--------~~--~d~~~~~~l~~~~~-~gI~i~~~~~V~~i 235 (452)
T TIGR03452 169 PESLVIVGGGYIAAEFAHVFSA--LGTRVTIVNRSTKLL--------RH--LDEDISDRFTEIAK-KKWDIRLGRNVTAV 235 (452)
T ss_pred CCcEEEECCCHHHHHHHHHHHh--CCCcEEEEEccCccc--------cc--cCHHHHHHHHHHHh-cCCEEEeCCEEEEE
Confidence 5799999999999999999999 899999999886542 21 12334444444443 47888877654321
Q ss_pred --------eeeccc-ccccCEEEEeeCCCCC
Q psy4525 93 --------ISLGDL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 93 --------~~~~~~-~~~yd~lvlAtG~~~~ 114 (388)
+...+. ...+|.|++|+|..|.
T Consensus 236 ~~~~~~v~v~~~~g~~i~~D~vl~a~G~~pn 266 (452)
T TIGR03452 236 EQDGDGVTLTLDDGSTVTADVLLVATGRVPN 266 (452)
T ss_pred EEcCCeEEEEEcCCCEEEcCEEEEeeccCcC
Confidence 222222 2479999999998774
|
Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate. |
| >TIGR01292 TRX_reduct thioredoxin-disulfide reductase | Back alignment and domain information |
|---|
Probab=97.80 E-value=7.3e-05 Score=69.67 Aligned_cols=47 Identities=15% Similarity=0.128 Sum_probs=32.2
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCV 327 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~ 327 (388)
+.++++++ ..++.+..++ .. ..+. +.++.++.+|.||+|+|..|+..
T Consensus 69 ~~gv~~~~-~~v~~v~~~~-~~-~~v~--------~~~~~~~~~d~liiAtG~~~~~~ 115 (300)
T TIGR01292 69 KFGAEIIY-EEVIKVDLSD-RP-FKVK--------TGDGKEYTAKAVIIATGASARKL 115 (300)
T ss_pred HcCCeEEE-EEEEEEEecC-Ce-eEEE--------eCCCCEEEeCEEEECCCCCcccC
Confidence 45788888 7788887542 21 1222 23446899999999999988753
|
This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070). |
| >TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0001 Score=77.95 Aligned_cols=92 Identities=12% Similarity=0.113 Sum_probs=66.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++++|||||+.|+.+|..|++ .|.+|+++++.+.+. +. .........+.+.+++.|++++.++.+..
T Consensus 139 ~~k~vvVVGgG~~GlE~A~~L~~--~G~~Vtvv~~~~~ll--------~~-~ld~~~~~~l~~~l~~~GV~v~~~~~v~~ 207 (785)
T TIGR02374 139 RFKKAAVIGGGLLGLEAAVGLQN--LGMDVSVIHHAPGLM--------AK-QLDQTAGRLLQRELEQKGLTFLLEKDTVE 207 (785)
T ss_pred cCCeEEEECCCHHHHHHHHHHHh--cCCeEEEEccCCchh--------hh-hcCHHHHHHHHHHHHHcCCEEEeCCceEE
Confidence 45789999999999999999999 899999999875531 11 12234455566677888999998765422
Q ss_pred --------Eeeecccc-cccCEEEEeeCCCCC
Q psy4525 92 --------DISLGDLT-NAYHAVVLTYGADND 114 (388)
Q Consensus 92 --------~~~~~~~~-~~yd~lvlAtG~~~~ 114 (388)
.+...+.+ ..+|.||+|+|..|.
T Consensus 208 i~~~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn 239 (785)
T TIGR02374 208 IVGATKADRIRFKDGSSLEADLIVMAAGIRPN 239 (785)
T ss_pred EEcCCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence 12333333 379999999998774
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=97.78 E-value=2.2e-05 Score=74.79 Aligned_cols=35 Identities=40% Similarity=0.639 Sum_probs=30.5
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
++|+||||||+|+++|..|++ .|++|+|||+.+.+
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~--~G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALAR--AGIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHH--TTCEEEEEESSSSC
T ss_pred ceEEEECCCHHHHHHHHHHHh--cccccccchhcccc
Confidence 589999999999999999999 89999999998653
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00016 Score=72.32 Aligned_cols=90 Identities=16% Similarity=0.209 Sum_probs=64.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||||+.|+.+|..+++ .|.+|+++++. .+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 179 ~~~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~-~~l--------~~--~d~~~~~~l~~~L~~~gV~i~~~~~v~~ 245 (484)
T TIGR01438 179 CPGKTLVVGASYVALECAGFLAG--IGLDVTVMVRS-ILL--------RG--FDQDCANKVGEHMEEHGVKFKRQFVPIK 245 (484)
T ss_pred cCCCEEEECCCHHHHHHHHHHHH--hCCcEEEEEec-ccc--------cc--cCHHHHHHHHHHHHHcCCEEEeCceEEE
Confidence 34689999999999999999999 89999999864 321 22 2345666677778888999987764321
Q ss_pred --------Eeeeccc----ccccCEEEEeeCCCCC
Q psy4525 92 --------DISLGDL----TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 --------~~~~~~~----~~~yd~lvlAtG~~~~ 114 (388)
.++..+. +..+|.|++|+|..|.
T Consensus 246 v~~~~~~~~v~~~~~~~~~~i~~D~vl~a~G~~pn 280 (484)
T TIGR01438 246 VEQIEAKVKVTFTDSTNGIEEEYDTVLLAIGRDAC 280 (484)
T ss_pred EEEcCCeEEEEEecCCcceEEEeCEEEEEecCCcC
Confidence 1222222 3479999999997763
|
This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity. |
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.78 E-value=3.2e-05 Score=75.89 Aligned_cols=38 Identities=26% Similarity=0.396 Sum_probs=34.2
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
...++|+||||||||+++|..|++ .|++|+|+|+.+.+
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~ 53 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKD--SGLRIALIEAQPAE 53 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhc--CCCEEEEEecCCcc
Confidence 346899999999999999999999 89999999987653
|
|
| >TIGR02733 desat_CrtD C-3',4' desaturase CrtD | Back alignment and domain information |
|---|
Probab=97.78 E-value=3e-05 Score=77.93 Aligned_cols=39 Identities=28% Similarity=0.421 Sum_probs=37.3
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
+||+|||||++||+||..|++ .|++|+|+|+++.+||..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~--~G~~v~vlE~~~~~GG~~ 40 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAK--RGYRVTLLEQHAQPGGCA 40 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCCcc
Confidence 689999999999999999999 899999999999999876
|
Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll. |
| >PRK06467 dihydrolipoamide dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00018 Score=71.79 Aligned_cols=90 Identities=19% Similarity=0.294 Sum_probs=63.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..+.+ .|.+|+++++.+.+. |. ...++...+.+.+++. ++++.++.+..
T Consensus 173 ~~~~vvIiGgG~iG~E~A~~l~~--~G~~Vtlv~~~~~il--------~~--~d~~~~~~~~~~l~~~-v~i~~~~~v~~ 239 (471)
T PRK06467 173 VPKRLLVMGGGIIGLEMGTVYHR--LGSEVDVVEMFDQVI--------PA--ADKDIVKVFTKRIKKQ-FNIMLETKVTA 239 (471)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--cCCCEEEEecCCCCC--------Cc--CCHHHHHHHHHHHhhc-eEEEcCCEEEE
Confidence 35799999999999999999999 899999999887642 32 2334555566666655 77777765431
Q ss_pred --------Eeeecc--c---ccccCEEEEeeCCCCC
Q psy4525 92 --------DISLGD--L---TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 --------~~~~~~--~---~~~yd~lvlAtG~~~~ 114 (388)
.+...+ . +..+|.||+|+|..|+
T Consensus 240 i~~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~pn 275 (471)
T PRK06467 240 VEAKEDGIYVTMEGKKAPAEPQRYDAVLVAVGRVPN 275 (471)
T ss_pred EEEcCCEEEEEEEeCCCcceEEEeCEEEEeeccccc
Confidence 122111 1 2479999999998774
|
|
| >PTZ00058 glutathione reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00015 Score=73.55 Aligned_cols=89 Identities=13% Similarity=0.153 Sum_probs=65.5
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQD 92 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~ 92 (388)
+++|+|||+|+.|+.+|..+.+ .|.+|+++++.+.+. |. ...++...+.+.+++.|++++.+..+...
T Consensus 237 pk~VvIIGgG~iGlE~A~~l~~--~G~~Vtli~~~~~il--------~~--~d~~i~~~l~~~L~~~GV~i~~~~~V~~I 304 (561)
T PTZ00058 237 AKRIGIAGSGYIAVELINVVNR--LGAESYIFARGNRLL--------RK--FDETIINELENDMKKNNINIITHANVEEI 304 (561)
T ss_pred CCEEEEECCcHHHHHHHHHHHH--cCCcEEEEEeccccc--------cc--CCHHHHHHHHHHHHHCCCEEEeCCEEEEE
Confidence 6899999999999999999999 899999999886532 22 23445566677778889999877765321
Q ss_pred -------e--eecc-c-ccccCEEEEeeCCCC
Q psy4525 93 -------I--SLGD-L-TNAYHAVVLTYGADN 113 (388)
Q Consensus 93 -------~--~~~~-~-~~~yd~lvlAtG~~~ 113 (388)
+ ...+ . ...+|.|++|+|..|
T Consensus 305 ~~~~~~~v~v~~~~~~~~i~aD~VlvA~Gr~P 336 (561)
T PTZ00058 305 EKVKEKNLTIYLSDGRKYEHFDYVIYCVGRSP 336 (561)
T ss_pred EecCCCcEEEEECCCCEEEECCEEEECcCCCC
Confidence 1 1111 1 237899999999766
|
|
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00021 Score=72.20 Aligned_cols=33 Identities=18% Similarity=0.162 Sum_probs=30.7
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
+||+|||+|+||+.+|..+++ .|.+|+++++..
T Consensus 1 yDViVIGaG~AGl~aA~ala~--~G~~v~Lie~~~ 33 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAAR--MGAKTLLLTLNL 33 (617)
T ss_pred CeEEEECccHHHHHHHHHHHH--CCCCEEEEeccc
Confidence 589999999999999999999 899999999864
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.5e-05 Score=74.03 Aligned_cols=40 Identities=25% Similarity=0.180 Sum_probs=36.9
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~ 55 (388)
.||+|||||+||+++|..|.+ .|.+|+|+|+.+.+||.+.
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~--~G~~V~viEk~~~iGG~~~ 41 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQ--LNKRVLVVEKRNHIGGNCY 41 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCCCCCcee
Confidence 589999999999999999998 8999999999999998753
|
The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae. |
| >PRK12416 protoporphyrinogen oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=3.3e-05 Score=76.98 Aligned_cols=42 Identities=21% Similarity=0.215 Sum_probs=36.4
Q ss_pred CcEEEECccHHHHHHHHHHHhhC----CCCcEEEEcCCCCCCCcee
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLL----PQSTVDIYEKLPVPFGLVR 55 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~----~g~~v~lie~~~~~gg~~~ 55 (388)
++|+|||||.|||+||..|.+.- .+.+|+|+|+.+.+||.++
T Consensus 2 ~~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~ 47 (463)
T PRK12416 2 KTVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIH 47 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEE
Confidence 57999999999999999999821 1479999999999999873
|
|
| >PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0002 Score=73.29 Aligned_cols=39 Identities=33% Similarity=0.364 Sum_probs=32.6
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
..||+|||+|.||++||..+++.-++.+|+|+|+.+..+
T Consensus 3 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~~g 41 (575)
T PRK05945 3 EHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHPIR 41 (575)
T ss_pred cccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCCCc
Confidence 369999999999999999999732358999999986544
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.6e-05 Score=74.97 Aligned_cols=37 Identities=24% Similarity=0.285 Sum_probs=33.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
.+.+|+|||||++|+++|..|++ .|++|+|+|+.+.+
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~--~g~~v~v~Er~~~~ 39 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALAR--QGIKVKLLEQAAEI 39 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHh--CCCcEEEEeeCccc
Confidence 34799999999999999999999 89999999998654
|
|
| >PTZ00052 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00022 Score=71.66 Aligned_cols=90 Identities=14% Similarity=0.142 Sum_probs=64.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..|++ .|.+|+++++. .+. +. ...++.+.+.+.+++.|++++.++.+..
T Consensus 181 ~~~~vvIIGgG~iG~E~A~~l~~--~G~~Vtli~~~-~~l--------~~--~d~~~~~~l~~~l~~~GV~i~~~~~v~~ 247 (499)
T PTZ00052 181 DPGKTLIVGASYIGLETAGFLNE--LGFDVTVAVRS-IPL--------RG--FDRQCSEKVVEYMKEQGTLFLEGVVPIN 247 (499)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcC-ccc--------cc--CCHHHHHHHHHHHHHcCCEEEcCCeEEE
Confidence 34689999999999999999999 89999999864 221 21 2334556677778888999988765421
Q ss_pred --------Eeeeccc-ccccCEEEEeeCCCCC
Q psy4525 92 --------DISLGDL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 --------~~~~~~~-~~~yd~lvlAtG~~~~ 114 (388)
.+...+. ...+|.|++|+|..|.
T Consensus 248 v~~~~~~~~v~~~~g~~i~~D~vl~a~G~~pn 279 (499)
T PTZ00052 248 IEKMDDKIKVLFSDGTTELFDTVLYATGRKPD 279 (499)
T ss_pred EEEcCCeEEEEECCCCEEEcCEEEEeeCCCCC
Confidence 1222222 2379999999997763
|
|
| >PRK06292 dihydrolipoamide dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00022 Score=71.07 Aligned_cols=90 Identities=16% Similarity=0.141 Sum_probs=65.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..|.+ .|.+|+++++.+.+. |. ...++...+.+.+++. ++++.++.+..
T Consensus 168 ~~k~v~VIGgG~~g~E~A~~l~~--~g~~Vtli~~~~~~l--------~~--~d~~~~~~~~~~l~~~-I~i~~~~~v~~ 234 (460)
T PRK06292 168 LPKSLAVIGGGVIGLELGQALSR--LGVKVTVFERGDRIL--------PL--EDPEVSKQAQKILSKE-FKIKLGAKVTS 234 (460)
T ss_pred cCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCcC--------cc--hhHHHHHHHHHHHhhc-cEEEcCCEEEE
Confidence 45899999999999999999999 899999999886643 21 2345666667777777 88887765521
Q ss_pred E-------eee--ccc---ccccCEEEEeeCCCCC
Q psy4525 92 D-------ISL--GDL---TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~-------~~~--~~~---~~~yd~lvlAtG~~~~ 114 (388)
. +.+ .+. ...+|.|++|+|..|.
T Consensus 235 i~~~~~~~v~~~~~~~~~~~i~~D~vi~a~G~~p~ 269 (460)
T PRK06292 235 VEKSGDEKVEELEKGGKTETIEADYVLVATGRRPN 269 (460)
T ss_pred EEEcCCceEEEEEcCCceEEEEeCEEEEccCCccC
Confidence 1 221 111 2379999999998764
|
|
| >TIGR02734 crtI_fam phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.72 E-value=3.4e-05 Score=77.66 Aligned_cols=38 Identities=21% Similarity=0.307 Sum_probs=36.0
Q ss_pred EEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee
Q psy4525 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55 (388)
Q Consensus 16 vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~ 55 (388)
|||||||.+||+||..|++ .|++|+|+|+++.+||.+.
T Consensus 1 vvVIGaG~~GL~aA~~La~--~G~~V~VlE~~~~~GG~~~ 38 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAA--AGIPVTVVEQRDKPGGRAG 38 (502)
T ss_pred CEEECcCHHHHHHHHHHHh--CCCcEEEEECCCCCcCceE
Confidence 6899999999999999999 8999999999999999873
|
Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis. |
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00025 Score=68.48 Aligned_cols=38 Identities=26% Similarity=0.288 Sum_probs=33.2
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
||+|||||+||+++|..|.+..+|.+|+++|+.+..++
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~ 38 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGG 38 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCC
Confidence 69999999999999999998334999999999876665
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.71 E-value=3.8e-05 Score=74.66 Aligned_cols=37 Identities=27% Similarity=0.236 Sum_probs=33.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
..++|+||||||+|+++|..|++ .|++|+|+|+.+.+
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~--~G~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGA--RGHSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHh--cCCcEEEEeCCCcc
Confidence 34799999999999999999999 89999999988753
|
|
| >PLN02568 polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.71 E-value=5.2e-05 Score=76.57 Aligned_cols=41 Identities=24% Similarity=0.385 Sum_probs=37.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCC-----CcEEEEcCCCCCCCcee
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQ-----STVDIYEKLPVPFGLVR 55 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g-----~~v~lie~~~~~gg~~~ 55 (388)
.++|+|||||+|||+||..|.+ .| ++|+|+|+.+.+||.+.
T Consensus 5 ~~~v~iiGaG~aGl~aa~~L~~--~g~~~~~~~v~v~E~~~~~GGr~~ 50 (539)
T PLN02568 5 KPRIVIIGAGMAGLTAANKLYT--SSAANDMFELTVVEGGDRIGGRIN 50 (539)
T ss_pred CCcEEEECCCHHHHHHHHHHHh--cccccCCceEEEEeCCCCcCCeEE
Confidence 3689999999999999999998 55 89999999999999873
|
|
| >PTZ00153 lipoamide dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00025 Score=73.17 Aligned_cols=90 Identities=18% Similarity=0.145 Sum_probs=63.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhh-cCCCcEEEceEEEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTG-DNPRVNFYGNICLGQ 91 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~-~~~~i~~~~~~~v~~ 91 (388)
+++|+|||+|+.|+.+|..+.+ .|.+|+++++.+.+. |. ...++...+.+.+ ++.|++++.++.+..
T Consensus 312 pk~VvIVGgG~iGvE~A~~l~~--~G~eVTLIe~~~~ll--------~~--~d~eis~~l~~~ll~~~GV~I~~~~~V~~ 379 (659)
T PTZ00153 312 QNYMGIVGMGIIGLEFMDIYTA--LGSEVVSFEYSPQLL--------PL--LDADVAKYFERVFLKSKPVRVHLNTLIEY 379 (659)
T ss_pred CCceEEECCCHHHHHHHHHHHh--CCCeEEEEeccCccc--------cc--CCHHHHHHHHHHHhhcCCcEEEcCCEEEE
Confidence 5789999999999999999999 899999999987653 32 2334555555543 567899988766521
Q ss_pred E--------eee--c-------cc---------ccccCEEEEeeCCCCC
Q psy4525 92 D--------ISL--G-------DL---------TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~--------~~~--~-------~~---------~~~yd~lvlAtG~~~~ 114 (388)
. +.+ . +. ...+|.|++|+|..|.
T Consensus 380 I~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~Pn 428 (659)
T PTZ00153 380 VRAGKGNQPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRKPN 428 (659)
T ss_pred EEecCCceEEEEEEeccccccccccccccccceEEEcCEEEEEECcccC
Confidence 1 111 1 01 2478999999997763
|
|
| >PLN02546 glutathione reductase | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00023 Score=72.21 Aligned_cols=91 Identities=13% Similarity=0.105 Sum_probs=66.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++|+|||+|+.|+.+|..|.+ .+.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 251 ~~k~V~VIGgG~iGvE~A~~L~~--~g~~Vtlv~~~~~il--------~~--~d~~~~~~l~~~L~~~GV~i~~~~~v~~ 318 (558)
T PLN02546 251 KPEKIAIVGGGYIALEFAGIFNG--LKSDVHVFIRQKKVL--------RG--FDEEVRDFVAEQMSLRGIEFHTEESPQA 318 (558)
T ss_pred cCCeEEEECCCHHHHHHHHHHHh--cCCeEEEEEeccccc--------cc--cCHHHHHHHHHHHHHCCcEEEeCCEEEE
Confidence 45799999999999999999998 899999999876542 21 2344556667777888999987765422
Q ss_pred E---------eeeccccc-ccCEEEEeeCCCCC
Q psy4525 92 D---------ISLGDLTN-AYHAVVLTYGADND 114 (388)
Q Consensus 92 ~---------~~~~~~~~-~yd~lvlAtG~~~~ 114 (388)
. +...+... .+|.|++|+|..++
T Consensus 319 i~~~~~g~v~v~~~~g~~~~~D~Viva~G~~Pn 351 (558)
T PLN02546 319 IIKSADGSLSLKTNKGTVEGFSHVMFATGRKPN 351 (558)
T ss_pred EEEcCCCEEEEEECCeEEEecCEEEEeeccccC
Confidence 1 11122222 48999999998774
|
|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00028 Score=70.83 Aligned_cols=35 Identities=31% Similarity=0.452 Sum_probs=31.2
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
.||+|||+|.||+.||..+++ .|. |+|+|+.+..+
T Consensus 3 ~DVlVVG~G~AGl~AA~~aa~--~G~-V~lleK~~~~~ 37 (488)
T TIGR00551 3 CDVVVIGSGAAGLSAALALAD--QGR-VIVLSKAPVTE 37 (488)
T ss_pred ccEEEECccHHHHHHHHHHHh--CCC-EEEEEccCCCC
Confidence 599999999999999999998 787 99999986544
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >TIGR02731 phytoene_desat phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.68 E-value=5e-05 Score=75.43 Aligned_cols=38 Identities=34% Similarity=0.426 Sum_probs=35.9
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
+|+|||||++||+||..|.+ .|++|+|+|+.+.+||.+
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~--~G~~v~vlE~~~~~GG~~ 38 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLAD--AGHTPIVLEARDVLGGKV 38 (453)
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCCCc
Confidence 58999999999999999999 899999999999999975
|
Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway. |
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=5.2e-05 Score=73.75 Aligned_cols=35 Identities=29% Similarity=0.616 Sum_probs=32.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
.++|+||||||+|+++|..|++ .|++|+|+|+.+.
T Consensus 3 ~~dviIvGgG~aGl~~A~~L~~--~G~~v~v~E~~~~ 37 (392)
T PRK09126 3 HSDIVVVGAGPAGLSFARSLAG--SGLKVTLIERQPL 37 (392)
T ss_pred cccEEEECcCHHHHHHHHHHHh--CCCcEEEEeCCCc
Confidence 4799999999999999999999 8999999998764
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=5.4e-05 Score=73.95 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=32.5
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
.++|+||||||+|+++|..|++ .|++|+|+|+.+.
T Consensus 3 ~~dV~IvGaGpaGl~~A~~La~--~G~~v~viE~~~~ 37 (400)
T PRK08013 3 SVDVVIAGGGMVGLAVACGLQG--SGLRVAVLEQRVP 37 (400)
T ss_pred cCCEEEECcCHHHHHHHHHHhh--CCCEEEEEeCCCC
Confidence 4799999999999999999999 8999999998765
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=5.9e-05 Score=73.26 Aligned_cols=34 Identities=26% Similarity=0.308 Sum_probs=31.5
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
.++|+||||||+|+++|..|++ .|++|+|||+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~--~G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAK--QGRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHh--CCCcEEEEcCCC
Confidence 3699999999999999999999 899999999764
|
|
| >KOG1276|consensus | Back alignment and domain information |
|---|
Probab=97.65 E-value=7.1e-05 Score=70.88 Aligned_cols=46 Identities=28% Similarity=0.435 Sum_probs=41.4
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceee
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY 56 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~ 56 (388)
...++|+|+|||.+||++|++|+++.+...+++||+.++.||.++.
T Consensus 9 ~~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS 54 (491)
T KOG1276|consen 9 VSGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRS 54 (491)
T ss_pred eecceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeee
Confidence 4578999999999999999999997777788999999999998855
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=6.4e-05 Score=72.99 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=33.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
.++|+||||||||+++|..|.+ .|++|+|+|+.+.+
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~--~G~~v~v~E~~~~~ 40 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQ--SGLRVALLAPRAPP 40 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHh--CCCeEEEEecCCCc
Confidence 4799999999999999999999 89999999988664
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=5.9e-05 Score=72.84 Aligned_cols=35 Identities=23% Similarity=0.407 Sum_probs=32.1
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
.+|+||||||||+++|..|++ .|++|+|+|+.+.+
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~--~g~~v~v~E~~~~~ 35 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQE--QGHEVKVFEKNESV 35 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCcc
Confidence 379999999999999999999 89999999988753
|
|
| >TIGR02730 carot_isom carotene isomerase | Back alignment and domain information |
|---|
Probab=97.63 E-value=7.3e-05 Score=75.10 Aligned_cols=40 Identities=25% Similarity=0.375 Sum_probs=37.6
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~ 55 (388)
+||||||||.+|+++|..|++ .|.+|+|+|+++.+||...
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~--~G~~V~vlE~~~~~GG~~~ 40 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAV--KGAKVLVLERYLIPGGSAG 40 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHH--CCCcEEEEECCCCCCCcee
Confidence 489999999999999999999 9999999999999998874
|
Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization. |
| >PRK13977 myosin-cross-reactive antigen; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=9.1e-05 Score=74.13 Aligned_cols=43 Identities=30% Similarity=0.410 Sum_probs=38.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhC--CCCcEEEEcCCCCCCCce
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLL--PQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~--~g~~v~lie~~~~~gg~~ 54 (388)
..++++|||||.|||+||.+|.+.. +|.+|+|+|+.+.+||.+
T Consensus 21 ~~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~ 65 (576)
T PRK13977 21 DNKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSL 65 (576)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCc
Confidence 3579999999999999999999832 478999999999999986
|
|
| >PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00039 Score=70.70 Aligned_cols=34 Identities=32% Similarity=0.295 Sum_probs=31.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
..||+|||+|.||++||..+ + .|.+|+|+|+.+.
T Consensus 7 ~~DVlVVG~G~AGl~AAi~A-~--~G~~VilleK~~~ 40 (543)
T PRK06263 7 ITDVLIIGSGGAGARAAIEA-E--RGKNVVIVSKGLF 40 (543)
T ss_pred ccCEEEECccHHHHHHHHHH-h--cCCCEEEEEccCC
Confidence 47999999999999999999 7 8999999999754
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=97.63 E-value=5.8e-05 Score=73.11 Aligned_cols=34 Identities=24% Similarity=0.444 Sum_probs=31.6
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
||+||||||||+++|..|++ .|++|+|+|+.+.+
T Consensus 1 dViIvGaG~aGl~~A~~L~~--~G~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALAR--SGLKIALIEATPAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhc--CCCEEEEEeCCCcc
Confidence 69999999999999999999 89999999998653
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >PRK10262 thioredoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00048 Score=65.17 Aligned_cols=89 Identities=16% Similarity=0.163 Sum_probs=64.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++|+|||+|..|+.+|..|++ .+.+|+++++.+.+. . ...+...+.+.+++.+++++.++.+..
T Consensus 145 ~g~~vvVvGgG~~g~e~A~~l~~--~~~~Vtlv~~~~~~~--------~----~~~~~~~~~~~l~~~gV~i~~~~~v~~ 210 (321)
T PRK10262 145 RNQKVAVIGGGNTAVEEALYLSN--IASEVHLIHRRDGFR--------A----EKILIKRLMDKVENGNIILHTNRTLEE 210 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--hCCEEEEEEECCccC--------C----CHHHHHHHHhhccCCCeEEEeCCEEEE
Confidence 45799999999999999999999 789999999875421 1 123455667777888999887765421
Q ss_pred ---------Eeeecc-------cccccCEEEEeeCCCCC
Q psy4525 92 ---------DISLGD-------LTNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ---------~~~~~~-------~~~~yd~lvlAtG~~~~ 114 (388)
.+.... ....+|.||+|+|..|+
T Consensus 211 v~~~~~~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~~p~ 249 (321)
T PRK10262 211 VTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPN 249 (321)
T ss_pred EEcCCccEEEEEEEEcCCCCeEEEEECCEEEEEeCCccC
Confidence 122211 12378999999998774
|
|
| >KOG1336|consensus | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00034 Score=67.37 Aligned_cols=92 Identities=21% Similarity=0.232 Sum_probs=71.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
....|+++|+|..|+.+|..|.. .+.+||+|++++.+- |. .....+.+.+..++++.++++++++.+..
T Consensus 212 ~~~~vV~vG~G~ig~Evaa~l~~--~~~~VT~V~~e~~~~--------~~-lf~~~i~~~~~~y~e~kgVk~~~~t~~s~ 280 (478)
T KOG1336|consen 212 LGGKVVCVGGGFIGMEVAAALVS--KAKSVTVVFPEPWLL--------PR-LFGPSIGQFYEDYYENKGVKFYLGTVVSS 280 (478)
T ss_pred cCceEEEECchHHHHHHHHHHHh--cCceEEEEccCccch--------hh-hhhHHHHHHHHHHHHhcCeEEEEecceee
Confidence 35789999999999999999999 799999999886532 22 23456777888889999999998887642
Q ss_pred E----------eeeccccc-ccCEEEEeeCCCCC
Q psy4525 92 D----------ISLGDLTN-AYHAVVLTYGADND 114 (388)
Q Consensus 92 ~----------~~~~~~~~-~yd~lvlAtG~~~~ 114 (388)
- +.+.+... ..|.||+.+|+.|.
T Consensus 281 l~~~~~Gev~~V~l~dg~~l~adlvv~GiG~~p~ 314 (478)
T KOG1336|consen 281 LEGNSDGEVSEVKLKDGKTLEADLVVVGIGIKPN 314 (478)
T ss_pred cccCCCCcEEEEEeccCCEeccCeEEEeeccccc
Confidence 1 33333333 79999999999884
|
|
| >COG2081 Predicted flavoproteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00086 Score=63.51 Aligned_cols=79 Identities=10% Similarity=-0.066 Sum_probs=51.0
Q ss_pred CCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccC----CCCCcccCCCccccCC
Q psy4525 268 NCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCV----DSDIPFNEKSCTVIPK 343 (388)
Q Consensus 268 ~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~----~~~l~~~~~~gi~l~~ 343 (388)
+++.||++++++.+..+..++ ....+ .+.+++++.||.+|+|+|=...+- ..+.++.+..|+.+-+
T Consensus 121 ~~~~gV~i~~~~~v~~v~~~~--~~f~l--------~t~~g~~i~~d~lilAtGG~S~P~lGstg~gy~iA~~~G~~I~~ 190 (408)
T COG2081 121 LEALGVTIRTRSRVSSVEKDD--SGFRL--------DTSSGETVKCDSLILATGGKSWPKLGSTGFGYPIARQFGHTITP 190 (408)
T ss_pred HHHcCcEEEecceEEeEEecC--ceEEE--------EcCCCCEEEccEEEEecCCcCCCCCCCCchhhHHHHHcCCcccc
Confidence 347899999999999998643 22222 245566899999999999654442 1345666667776543
Q ss_pred C--CCCeecchhhHHh
Q psy4525 344 E--GVPVVTWEGWKAI 357 (388)
Q Consensus 344 ~--~~~~~~~~~w~~~ 357 (388)
- .....+++ |..+
T Consensus 191 ~rpalvpft~~-~~~~ 205 (408)
T COG2081 191 LRPALVPFTLD-ESFL 205 (408)
T ss_pred CccccCCccCC-HHHH
Confidence 2 22344444 5555
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.58 E-value=7.1e-05 Score=72.86 Aligned_cols=34 Identities=29% Similarity=0.332 Sum_probs=31.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCC---CCcEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLP---QSTVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~---g~~v~lie~~ 47 (388)
..++|+||||||||+++|..|++ . |++|+|||+.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~--~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSR--LSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhh--cccCCCEEEEEeCC
Confidence 35799999999999999999999 7 9999999994
|
|
| >PLN02529 lysine-specific histone demethylase 1 | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00011 Score=76.41 Aligned_cols=42 Identities=36% Similarity=0.370 Sum_probs=38.8
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
...++|+|||||+||++||..|.+ .|++|+|+|+.+.+||.+
T Consensus 158 ~~~~~v~viGaG~aGl~aA~~l~~--~g~~v~v~E~~~~~GG~~ 199 (738)
T PLN02529 158 GTEGSVIIVGAGLAGLAAARQLLS--FGFKVVVLEGRNRPGGRV 199 (738)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHH--cCCcEEEEecCccCcCce
Confidence 346899999999999999999999 899999999999999876
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=97.57 E-value=8.6e-05 Score=72.27 Aligned_cols=35 Identities=31% Similarity=0.480 Sum_probs=32.5
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
+++|+||||||+|+++|..|++ .|++|+|||+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~--~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHK--AGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHH--CCCCEEEEECCCC
Confidence 3689999999999999999999 8999999999874
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.57 E-value=8.2e-05 Score=72.35 Aligned_cols=33 Identities=33% Similarity=0.530 Sum_probs=31.6
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
.++|+||||||+|+++|..|++ .|++|+|+|+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~--~G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALAR--AGLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHh--CCCcEEEEccC
Confidence 4799999999999999999999 99999999997
|
|
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.56 E-value=9.7e-05 Score=71.42 Aligned_cols=35 Identities=23% Similarity=0.236 Sum_probs=32.4
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
++|+||||||+|+++|..|++ .|++|+|||+.+.+
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~--~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGR--HGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHh--CCCCEEEEcCCCCC
Confidence 589999999999999999999 89999999988654
|
|
| >PLN02676 polyamine oxidase | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00012 Score=73.35 Aligned_cols=44 Identities=27% Similarity=0.328 Sum_probs=39.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCCCCCCCceee
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKLPVPFGLVRY 56 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~~~~gg~~~~ 56 (388)
...++|+|||||++||+||..|.+ .|. +|+|+|+.+.+||.+..
T Consensus 24 ~~~~~v~IIGaG~sGL~aa~~L~~--~g~~~v~vlE~~~~~GG~~~~ 68 (487)
T PLN02676 24 KPSPSVIIVGAGMSGISAAKTLSE--AGIEDILILEATDRIGGRMRK 68 (487)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH--cCCCcEEEecCCCCCCCccee
Confidence 346799999999999999999999 787 69999999999997743
|
|
| >KOG0685|consensus | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00012 Score=70.35 Aligned_cols=42 Identities=26% Similarity=0.264 Sum_probs=36.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
...+|||||||.||++||.+|.+. -..+++|+|..+++||.+
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~-gf~~~~IlEa~dRIGGRI 61 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLEN-GFIDVLILEASDRIGGRI 61 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHh-CCceEEEEEeccccCceE
Confidence 456899999999999999999962 346899999999999976
|
|
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=97.55 E-value=8.1e-05 Score=72.12 Aligned_cols=33 Identities=24% Similarity=0.317 Sum_probs=30.9
Q ss_pred cEEEECccHHHHHHHHHHHhhCCC-CcEEEEcCCCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQ-STVDIYEKLPV 49 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g-~~v~lie~~~~ 49 (388)
||+||||||+|+++|..|++ .| ++|+|+|+.+.
T Consensus 1 dv~IvGaG~aGl~~A~~L~~--~G~~~v~v~E~~~~ 34 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSR--LGKIKIALIEANSP 34 (382)
T ss_pred CEEEECccHHHHHHHHHHhc--CCCceEEEEeCCCc
Confidence 69999999999999999999 89 99999998754
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00024 Score=62.25 Aligned_cols=132 Identities=13% Similarity=0.166 Sum_probs=60.1
Q ss_pred EEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCH-HHHHHHhcCCCceE-Eeccc
Q psy4525 156 TILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTI-KEFREMTKLPHVQT-VFRNE 233 (388)
Q Consensus 156 vVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~-~el~~l~~~~~~~~-~~~~~ 233 (388)
+|||+|++|+-+|..|. +.+.++|+++.|.+..--.... .....+ ..|.... .+.-.
T Consensus 1 ~IIGaG~aGl~~a~~l~--------------------~~g~~~v~v~e~~~~~Gg~w~~~~~~~~~-~~~~~~~~~~~~~ 59 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLL--------------------ERGIDPVVVLERNDRPGGVWRRYYSYTRL-HSPSFFSSDFGLP 59 (203)
T ss_dssp EEE--SHHHHHHHHHHH--------------------HTT---EEEEESSSSSTTHHHCH-TTTT--BSSSCCTGGSS--
T ss_pred CEECcCHHHHHHHHHHH--------------------hCCCCcEEEEeCCCCCCCeeEEeCCCCcc-ccCccccccccCC
Confidence 69999999999999775 3566559999988543211000 000000 1111000 00000
Q ss_pred ccc--cchhhh----ccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCc
Q psy4525 234 QLC--GVHEAS----ATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTED 307 (388)
Q Consensus 234 ~~~--~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~ 307 (388)
++. .....+ .......+.+.+++..+.. +.++++++++.++++..++++ -.+++ .+
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~v~~yl~~~~~--------~~~l~i~~~~~V~~v~~~~~~--w~v~~--------~~ 121 (203)
T PF13738_consen 60 DFESFSFDDSPEWRWPHDFPSGEEVLDYLQEYAE--------RFGLEIRFNTRVESVRRDGDG--WTVTT--------RD 121 (203)
T ss_dssp CCCHSCHHHHHHHHHSBSSEBHHHHHHHHHHHHH--------HTTGGEETS--EEEEEEETTT--EEEEE--------TT
T ss_pred cccccccccCCCCCCCcccCCHHHHHHHHHHHHh--------hcCcccccCCEEEEEEEeccE--EEEEE--------Ee
Confidence 000 011110 0111224455566655543 345568899999999876544 23332 33
Q ss_pred eeEEecceEEEcccc--CCcc
Q psy4525 308 TELIPSGIAFRSIGY--QSRC 326 (388)
Q Consensus 308 ~~~l~~D~Vi~a~G~--~p~~ 326 (388)
++++.||.||+|||. .|+.
T Consensus 122 ~~~~~a~~VVlAtG~~~~p~~ 142 (203)
T PF13738_consen 122 GRTIRADRVVLATGHYSHPRI 142 (203)
T ss_dssp S-EEEEEEEEE---SSCSB--
T ss_pred cceeeeeeEEEeeeccCCCCc
Confidence 468899999999997 4544
|
... |
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0001 Score=72.17 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=31.1
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
.++|+||||||+|+++|..|.+ .|++|+|+|+.
T Consensus 4 ~~dV~IvGaG~~Gl~~A~~L~~--~G~~v~viE~~ 36 (405)
T PRK08850 4 SVDVAIIGGGMVGLALAAALKE--SDLRIAVIEGQ 36 (405)
T ss_pred cCCEEEECccHHHHHHHHHHHh--CCCEEEEEcCC
Confidence 4799999999999999999999 89999999985
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0001 Score=72.24 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=31.6
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
++|+||||||+|+++|..|++ .|++|+|||+.+.
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~ 34 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQ--RGIEVVVFEAAPE 34 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHh--CCCcEEEEEcCCc
Confidence 379999999999999999999 8999999999864
|
|
| >PRK06847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0012 Score=63.85 Aligned_cols=47 Identities=13% Similarity=0.083 Sum_probs=34.1
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.|+++++++.++++..++ +. ..+.+ .+++++.+|.||.|+|..+..
T Consensus 119 ~~gv~v~~~~~v~~i~~~~-~~-~~v~~--------~~g~~~~ad~vI~AdG~~s~~ 165 (375)
T PRK06847 119 AAGADVRLGTTVTAIEQDD-DG-VTVTF--------SDGTTGRYDLVVGADGLYSKV 165 (375)
T ss_pred HhCCEEEeCCEEEEEEEcC-CE-EEEEE--------cCCCEEEcCEEEECcCCCcch
Confidence 4689999999999987643 22 22332 344579999999999987654
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00012 Score=71.58 Aligned_cols=34 Identities=29% Similarity=0.310 Sum_probs=32.0
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
.+|+|||||++|+++|..|++ .|++|+|+|+.+.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~--~G~~V~i~E~~~~ 36 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAA--RGWAVTIIEKAQE 36 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCc
Confidence 689999999999999999999 8999999998764
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00012 Score=73.67 Aligned_cols=35 Identities=29% Similarity=0.456 Sum_probs=32.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
.++|+||||||+|+++|..|++ .|++|+|+|+.+.
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~--~G~~v~viEr~~~ 36 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELAL--AGVKTCVIERLKE 36 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCC
Confidence 3699999999999999999999 8999999998764
|
|
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.52 E-value=9.7e-05 Score=71.85 Aligned_cols=35 Identities=23% Similarity=0.306 Sum_probs=32.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
..++|+||||||+|+++|..|++ .|++|+|+|+.+
T Consensus 4 ~~~dViIvGgG~aGl~~A~~La~--~G~~V~liE~~~ 38 (391)
T PRK08020 4 QPTDIAIVGGGMVGAALALGLAQ--HGFSVAVLEHAA 38 (391)
T ss_pred ccccEEEECcCHHHHHHHHHHhc--CCCEEEEEcCCC
Confidence 45899999999999999999999 899999999874
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00012 Score=71.29 Aligned_cols=35 Identities=26% Similarity=0.235 Sum_probs=31.9
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
.+|+||||||+|+++|..|++ .|++|+|+|+.+..
T Consensus 1 ~~V~IVGgG~aGl~~A~~L~~--~G~~v~v~E~~~~~ 35 (391)
T PRK07588 1 MKVAISGAGIAGPTLAYWLRR--YGHEPTLIERAPEL 35 (391)
T ss_pred CeEEEECccHHHHHHHHHHHH--CCCceEEEeCCCCc
Confidence 379999999999999999999 89999999987653
|
|
| >TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0005 Score=66.21 Aligned_cols=91 Identities=18% Similarity=0.166 Sum_probs=62.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhhC--CC--CcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLL--PQ--STVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNIC 88 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~--~g--~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 88 (388)
.++|+|||+|++|+.+|..|.+.. .+ .+|+++. .+.+. +. ....+...+.+.+++.+++++.++.
T Consensus 145 ~~~vvVvG~G~~g~E~A~~l~~~~~~~g~~~~V~li~-~~~~l--------~~--~~~~~~~~~~~~l~~~gV~v~~~~~ 213 (364)
T TIGR03169 145 TKRLAVVGGGAAGVEIALALRRRLPKRGLRGQVTLIA-GASLL--------PG--FPAKVRRLVLRLLARRGIEVHEGAP 213 (364)
T ss_pred CceEEEECCCHHHHHHHHHHHHHHHhcCCCceEEEEe-CCccc--------cc--CCHHHHHHHHHHHHHCCCEEEeCCe
Confidence 469999999999999999998632 23 4899993 32221 11 2234556667778888999998876
Q ss_pred EEE----Eeeeccc-ccccCEEEEeeCCCCC
Q psy4525 89 LGQ----DISLGDL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 89 v~~----~~~~~~~-~~~yd~lvlAtG~~~~ 114 (388)
+.. .+.+.+. ...+|.||+|+|..++
T Consensus 214 v~~i~~~~v~~~~g~~i~~D~vi~a~G~~p~ 244 (364)
T TIGR03169 214 VTRGPDGALILADGRTLPADAILWATGARAP 244 (364)
T ss_pred eEEEcCCeEEeCCCCEEecCEEEEccCCChh
Confidence 532 2334333 3489999999998764
|
Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown. |
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00013 Score=71.37 Aligned_cols=36 Identities=31% Similarity=0.531 Sum_probs=32.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
..+||+||||||+|+++|..|++ .|++|+|+|+.+.
T Consensus 5 ~~~dV~IvGgG~~Gl~~A~~La~--~G~~v~liE~~~~ 40 (407)
T PRK06185 5 ETTDCCIVGGGPAGMMLGLLLAR--AGVDVTVLEKHAD 40 (407)
T ss_pred ccccEEEECCCHHHHHHHHHHHh--CCCcEEEEecCCc
Confidence 45799999999999999999999 8999999998753
|
|
| >TIGR02732 zeta_caro_desat carotene 7,8-desaturase | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00013 Score=72.74 Aligned_cols=39 Identities=38% Similarity=0.517 Sum_probs=36.3
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~ 55 (388)
+|+|||||.+|+++|..|.+ .|++|+|+|+.+.+||.+.
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~--~G~~v~v~E~~~~~GG~~~ 39 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVD--AGHEVDIYESRSFIGGKVG 39 (474)
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCcEEEEEecCCCCceee
Confidence 58999999999999999999 8999999999999998763
|
Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum. |
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00013 Score=71.09 Aligned_cols=35 Identities=26% Similarity=0.434 Sum_probs=32.5
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
..+|+||||||+|+++|..|++ .|++|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~--~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHL--AGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHh--cCCCEEEEEcCCc
Confidence 4689999999999999999999 8999999999864
|
|
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00044 Score=67.75 Aligned_cols=34 Identities=18% Similarity=0.186 Sum_probs=30.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
..+||+|||||.||+.||.+.++ .|.++.++--+
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaAR--mG~ktlLlT~~ 36 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAAR--MGAKTLLLTLN 36 (621)
T ss_pred CCCceEEECCCccchHHHHhhhc--cCCeEEEEEcC
Confidence 34899999999999999999999 99999888654
|
|
| >COG1231 Monoamine oxidase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00017 Score=69.17 Aligned_cols=42 Identities=31% Similarity=0.305 Sum_probs=39.4
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
....+|+|||+|.+||++|..|.+ .|++|+|+|..+.+||.+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~k--aG~~v~ilEar~r~GGR~ 46 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKK--AGYQVQILEARDRVGGRS 46 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhh--cCcEEEEEeccCCcCcee
Confidence 567899999999999999999999 999999999999999876
|
|
| >PLN02487 zeta-carotene desaturase | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00016 Score=73.25 Aligned_cols=40 Identities=43% Similarity=0.588 Sum_probs=37.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
+++|+|||+|++|+++|..|.+ .|++|+|+|+.+.+||.+
T Consensus 75 ~~~v~iiG~G~~Gl~~a~~L~~--~g~~v~i~E~~~~~gG~~ 114 (569)
T PLN02487 75 KLKVAIIGAGLAGMSTAVELLD--QGHEVDIYESRPFIGGKV 114 (569)
T ss_pred CCeEEEECCCHHHHHHHHHHHh--CCCeeEEEecCCCCCCce
Confidence 3599999999999999999999 899999999999999876
|
|
| >PLN02328 lysine-specific histone demethylase 1 homolog | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00017 Score=75.33 Aligned_cols=41 Identities=37% Similarity=0.430 Sum_probs=38.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
..++|+|||||++|++||..|.+ .|.+|+|+|+.+.+||.+
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~--~g~~v~v~E~~~r~GGr~ 277 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLS--MGFKVVVLEGRARPGGRV 277 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeccccCCCcc
Confidence 46899999999999999999999 899999999999999876
|
|
| >COG2907 Predicted NAD/FAD-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00014 Score=67.25 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=37.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
.++.+|+|||+|.+||+||..|.+ -.+||+||.....||--
T Consensus 6 ~~r~~IAVIGsGisGLSAA~~Ls~---rhdVTLfEA~~rlGGha 46 (447)
T COG2907 6 HPRRKIAVIGSGISGLSAAWLLSR---RHDVTLFEADRRLGGHA 46 (447)
T ss_pred CCCcceEEEcccchhhhhHHhhhc---ccceEEEeccccccCcc
Confidence 467899999999999999999998 68999999999998864
|
|
| >TIGR00292 thiazole biosynthesis enzyme | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0021 Score=58.52 Aligned_cols=56 Identities=11% Similarity=0.060 Sum_probs=38.9
Q ss_pred ceeEEEEecCcceeeeeCCCC-ceeEEEEccCccccC---CceeEEecceEEEccccCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNG-AITGINFANQQALVT---EDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~-~v~~v~~~~~~~~~~---~~~~~l~~D~Vi~a~G~~p~ 325 (388)
+.|+++++++.+.++..++++ ++.++.......... .+...+.|+.||.|||....
T Consensus 112 e~GV~I~~~t~V~dli~~~~~~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~ 171 (254)
T TIGR00292 112 QAGAKIFNGTSVEDLITRDDTVGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAE 171 (254)
T ss_pred HcCCEEECCcEEEEEEEeCCCCceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCch
Confidence 568999999999998765432 688887642210001 13468999999999997754
|
This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis. |
| >PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00026 Score=61.87 Aligned_cols=52 Identities=12% Similarity=0.050 Sum_probs=36.3
Q ss_pred ceeEEEEecCcceeeeeCCCCce----eEEEEccCccccCCceeEEecceEEEccccCCccC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAI----TGINFANQQALVTEDTELIPSGIAFRSIGYQSRCV 327 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v----~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~ 327 (388)
..++++++...+.++.... +.+ ..+.. ..++++.++.+|.||+|||.+|+.+
T Consensus 70 ~~~v~~~~~~~v~~i~~~~-~~~~~~~~~~~~-----~~~~~~~~~~~d~lviAtG~~~~~~ 125 (201)
T PF07992_consen 70 NRGVEIRLNAKVVSIDPES-KRVVCPAVTIQV-----VETGDGREIKYDYLVIATGSRPRTP 125 (201)
T ss_dssp HHTHEEEHHHTEEEEEEST-TEEEETCEEEEE-----EETTTEEEEEEEEEEEESTEEEEEE
T ss_pred cceEEEeeccccccccccc-cccccCccccee-----eccCCceEecCCeeeecCcccccee
Confidence 4678888888888887643 322 01110 1256788999999999999988754
|
Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E .... |
| >PLN02172 flavin-containing monooxygenase FMO GS-OX | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00099 Score=66.16 Aligned_cols=64 Identities=8% Similarity=-0.023 Sum_probs=38.2
Q ss_pred hHHHHHHHhhCCCCCCCCCCceeEE--EEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccc--cCCc
Q psy4525 250 KRLTELILKTSNPDESKSNCSKYFR--PIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIG--YQSR 325 (388)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~gv~--~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G--~~p~ 325 (388)
+.+.+++..++. ..++. +++++.|+++...+ +.. .+...++ .+...+..+|.||+|+| ..|+
T Consensus 111 ~ev~~YL~~~a~--------~fgl~~~I~~~t~V~~V~~~~-~~w-~V~~~~~----~~~~~~~~~d~VIvAtG~~~~P~ 176 (461)
T PLN02172 111 REVLAYLQDFAR--------EFKIEEMVRFETEVVRVEPVD-GKW-RVQSKNS----GGFSKDEIFDAVVVCNGHYTEPN 176 (461)
T ss_pred HHHHHHHHHHHH--------HcCCcceEEecCEEEEEeecC-CeE-EEEEEcC----CCceEEEEcCEEEEeccCCCCCc
Confidence 456666666543 34555 78899999997643 322 2222111 11223568999999999 4565
Q ss_pred cC
Q psy4525 326 CV 327 (388)
Q Consensus 326 ~~ 327 (388)
.+
T Consensus 177 ~P 178 (461)
T PLN02172 177 VA 178 (461)
T ss_pred CC
Confidence 43
|
|
| >PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00058 Score=66.52 Aligned_cols=49 Identities=8% Similarity=0.008 Sum_probs=29.7
Q ss_pred CceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 269 CSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 269 ~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
.+.||++++++.+..+..++ +.+..++. .+..++.||.||+|+|-...+
T Consensus 120 ~~~gv~i~~~~~V~~i~~~~-~~~f~v~~--------~~~~~~~a~~vILAtGG~S~p 168 (409)
T PF03486_consen 120 KRLGVEIHFNTRVKSIEKKE-DGVFGVKT--------KNGGEYEADAVILATGGKSYP 168 (409)
T ss_dssp HHHT-EEE-S--EEEEEEET-TEEEEEEE--------TTTEEEEESEEEE----SSSG
T ss_pred HHcCCEEEeCCEeeeeeecC-CceeEeec--------cCcccccCCEEEEecCCCCcc
Confidence 36799999999999998643 44555543 345689999999999976543
|
; PDB: 2I0Z_A 3V76_A 2GQF_A. |
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00019 Score=73.02 Aligned_cols=36 Identities=25% Similarity=0.287 Sum_probs=33.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
..++|+||||||+|+++|..|++ .|++|+|||+.+.
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~--~G~~v~viEr~~~ 41 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGR--RGVDSILVERKDG 41 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCC
Confidence 35799999999999999999999 8999999998753
|
|
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00025 Score=72.20 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=33.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
...+|+||||||+|+++|..|.+ .|++|+|||+.+.+
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~--~G~~v~viE~~~~~ 58 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQ--QGVPVVLLDDDDTL 58 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHh--CCCcEEEEeCCCCC
Confidence 45799999999999999999999 89999999998643
|
|
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00016 Score=70.93 Aligned_cols=38 Identities=29% Similarity=0.347 Sum_probs=32.9
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
||+|||+|.||+.||..+++ .|.+|+|+|+.+..||..
T Consensus 1 DVvVIG~G~AGl~AA~~Aae--~G~~V~lvek~~~~gg~~ 38 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAE--AGAKVLLVEKGPRLGGSS 38 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHH--TTT-EEEEESSSGGGSGG
T ss_pred CEEEECCCHHHHHHHHHHhh--hcCeEEEEEeeccccccc
Confidence 79999999999999999999 999999999998876643
|
; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A .... |
| >PLN02612 phytoene desaturase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00023 Score=72.59 Aligned_cols=42 Identities=26% Similarity=0.228 Sum_probs=38.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
..+++|+|||||++|+++|.+|.+ .|.+++++|+.+.+||..
T Consensus 91 ~~~~~v~iiG~G~~Gl~~a~~l~~--~g~~~~~~e~~~~~gG~~ 132 (567)
T PLN02612 91 AKPLKVVIAGAGLAGLSTAKYLAD--AGHKPILLEARDVLGGKV 132 (567)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHh--cCCeEEEEecCCCCCCcc
Confidence 346899999999999999999999 899999999998888875
|
|
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00023 Score=71.66 Aligned_cols=38 Identities=37% Similarity=0.479 Sum_probs=35.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
..||||||+|.||++||..+++ .|.+|+|+|+.+..||
T Consensus 61 ~~DVvVVG~G~AGl~AAi~Aa~--~Ga~VivlEK~~~~GG 98 (506)
T PRK06481 61 KYDIVIVGAGGAGMSAAIEAKD--AGMNPVILEKMPVAGG 98 (506)
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCCCC
Confidence 5799999999999999999999 8999999999987765
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00021 Score=70.15 Aligned_cols=35 Identities=31% Similarity=0.449 Sum_probs=31.4
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCC-CcEEEEcCCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQ-STVDIYEKLPVP 50 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g-~~v~lie~~~~~ 50 (388)
.+|+|||||++|+++|..|++ .| ++|+|||+.+.+
T Consensus 1 ~~V~IiGgGiaGla~A~~L~~--~g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 1 LRVAIIGGGIAGVALALNLCK--HSHLNVQLFEAAPAF 36 (414)
T ss_pred CeEEEECCCHHHHHHHHHHHh--cCCCCEEEEecCCcC
Confidence 379999999999999999999 77 699999998764
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >PRK04176 ribulose-1,5-biphosphate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0029 Score=57.83 Aligned_cols=56 Identities=11% Similarity=0.056 Sum_probs=38.8
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccc---cCCceeEEecceEEEccccCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQAL---VTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~---~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
+.|+++++++.+.++..++++++.++........ ...+...+.|+.||.|+|....
T Consensus 116 ~~Gv~I~~~t~V~dl~~~~~g~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~a~ 174 (257)
T PRK04176 116 DAGAKIFNGVSVEDVILREDPRVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHDAE 174 (257)
T ss_pred HcCCEEEcCceeceeeEeCCCcEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCCcH
Confidence 5689999999999987654457877765421000 0123468999999999997654
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00049 Score=68.92 Aligned_cols=77 Identities=17% Similarity=0.112 Sum_probs=56.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++|+|||+|++|+++|..|++ .|.+|+++|+.+.. ......+.+++.|+.++.+....
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~~--~G~~V~~~d~~~~~-----------------~~~~~~~~l~~~gv~~~~~~~~~- 74 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALLE--LGARVTVVDDGDDE-----------------RHRALAAILEALGATVRLGPGPT- 74 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCchh-----------------hhHHHHHHHHHcCCEEEECCCcc-
Confidence 45789999999999999999998 89999999976321 12223444566788887665432
Q ss_pred EeeecccccccCEEEEeeCCCCC
Q psy4525 92 DISLGDLTNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~~~~~~~~~~yd~lvlAtG~~~~ 114 (388)
....+|.||+++|..+.
T Consensus 75 ------~~~~~D~Vv~s~Gi~~~ 91 (480)
T PRK01438 75 ------LPEDTDLVVTSPGWRPD 91 (480)
T ss_pred ------ccCCCCEEEECCCcCCC
Confidence 12368999999998764
|
|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00021 Score=73.35 Aligned_cols=36 Identities=28% Similarity=0.290 Sum_probs=33.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
.++.+|+|||||++|+++|..|++ .|++|+|||+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r--~Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKK--KGFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHh--cCCeEEEEeccc
Confidence 356899999999999999999999 899999999875
|
|
| >PRK08274 tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00026 Score=70.63 Aligned_cols=36 Identities=22% Similarity=0.308 Sum_probs=33.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
...||||||+|+||++||..+++ .|.+|+|+|+.+.
T Consensus 3 ~~~DVvVVG~G~aGl~AA~~aa~--~G~~V~vlEk~~~ 38 (466)
T PRK08274 3 SMVDVLVIGGGNAALCAALAARE--AGASVLLLEAAPR 38 (466)
T ss_pred ccCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCC
Confidence 34799999999999999999999 8999999999863
|
|
| >COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00045 Score=63.27 Aligned_cols=39 Identities=28% Similarity=0.147 Sum_probs=36.8
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
+|++|||+|.+|+.+|..+.+ .|.+|.|+|+.+++||.+
T Consensus 2 fd~lIVGaGlsG~V~A~~a~~--~gk~VLIvekR~HIGGNa 40 (374)
T COG0562 2 FDYLIVGAGLSGAVIAEVAAQ--LGKRVLIVEKRNHIGGNA 40 (374)
T ss_pred CcEEEECCchhHHHHHHHHHH--cCCEEEEEeccccCCCcc
Confidence 689999999999999998888 899999999999999986
|
|
| >PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00025 Score=68.63 Aligned_cols=34 Identities=38% Similarity=0.534 Sum_probs=31.2
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
++|+|||||++|+.+|..|++ .|++|+|+|+.+.
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr--~Gl~V~LiE~rp~ 36 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAK--RGVPVELYEMRPV 36 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCcEEEEEccCc
Confidence 589999999999999999999 8999999996543
|
|
| >PRK12409 D-amino acid dehydrogenase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00026 Score=69.34 Aligned_cols=35 Identities=14% Similarity=0.394 Sum_probs=32.5
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
++|+|||||.+|+++|.+|++ .|.+|+|+|+++.+
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~--~g~~V~vle~~~~~ 36 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQ--RGYQVTVFDRHRYA 36 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCC
Confidence 599999999999999999999 89999999998643
|
|
| >KOG2404|consensus | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00085 Score=61.46 Aligned_cols=39 Identities=26% Similarity=0.332 Sum_probs=34.9
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
..|||||+|.|||+++..+.. .+-.|+++|+...+||..
T Consensus 10 spvvVIGgGLAGLsasn~iin--~gg~V~llek~~s~GGNS 48 (477)
T KOG2404|consen 10 SPVVVIGGGLAGLSASNDIIN--KGGIVILLEKAGSIGGNS 48 (477)
T ss_pred CcEEEECCchhhhhhHHHHHh--cCCeEEEEeccCCcCCcc
Confidence 379999999999999999999 777799999998888754
|
|
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00028 Score=71.04 Aligned_cols=36 Identities=28% Similarity=0.285 Sum_probs=32.8
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
...+||+|||||++|+++|..|++ .|.+|+|+|+.+
T Consensus 41 ~~~~DViIVGAG~aGlalA~aLa~--~G~~V~vlEr~~ 76 (514)
T PLN02985 41 DGATDVIIVGAGVGGSALAYALAK--DGRRVHVIERDL 76 (514)
T ss_pred CCCceEEEECCCHHHHHHHHHHHH--cCCeEEEEECcC
Confidence 346899999999999999999999 899999999874
|
|
| >PF13454 NAD_binding_9: FAD-NAD(P)-binding | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0012 Score=55.53 Aligned_cols=139 Identities=14% Similarity=0.136 Sum_probs=71.3
Q ss_pred EEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcc-cccCCHH-HHHHHhcCCCceEEeccc
Q psy4525 156 TILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGAL-QVAFTIK-EFREMTKLPHVQTVFRNE 233 (388)
Q Consensus 156 vVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~-~~~~~~~-el~~l~~~~~~~~~~~~~ 233 (388)
+|||+|.+|+-++..|.+.. ......+|+++.+.+.. -.++... .-..+.+.+.-.+.+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~----------------~~~~~~~I~vfd~~~~G~G~~~~~~~~~~~llN~~a~~~s~~~~ 64 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQA----------------DPKPPLEITVFDPSPFGAGGAYRPDQPPSHLLNTPADQMSLFPD 64 (156)
T ss_pred CEECcCHHHHHHHHHHHHhc----------------CCCCCCEEEEEcCCCccccccCCCCCChHHhhcccccccccccc
Confidence 59999999999999887221 01233579999986664 2233332 223355655544444332
Q ss_pred c-----cccchhhhc----cc---c-chhhHHHHHHHhhCCCCCCCCCCceeEEEE-ecCcceeeeeCCCCceeEEEEcc
Q psy4525 234 Q-----LCGVHEASA----TL---A-RPRKRLTELILKTSNPDESKSNCSKYFRPI-FLRSPTEFKLNDNGAITGINFAN 299 (388)
Q Consensus 234 ~-----~~~~~~~~~----~l---~-~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~-~~~~~~~i~~~~~~~v~~v~~~~ 299 (388)
+ .+|+..... .. . -+|.-.-++|...+..... ....++++. ....++.+...+++. .+
T Consensus 65 ~~~~~f~~Wl~~~~~~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~--~~~~~i~v~~~~~~V~~i~~~~~~~--~v---- 136 (156)
T PF13454_consen 65 DPGDDFVDWLRANGADEAEEIDPDDFPPRALFGEYLRDRFDRLLA--RLPAGITVRHVRAEVVDIRRDDDGY--RV---- 136 (156)
T ss_pred cCCCCHHHHHHhcCcccccccccccCCCHHHHHHHHHHHHHHHHH--hhcCCcEEEEEeeEEEEEEEcCCcE--EE----
Confidence 2 223333221 00 0 0122222333332221111 013444433 234566776654442 22
Q ss_pred CccccCCceeEEecceEEEcccc
Q psy4525 300 QQALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 300 ~~~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
.+.++..+.+|.||+|||.
T Consensus 137 ----~~~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 137 ----VTADGQSIRADAVVLATGH 155 (156)
T ss_pred ----EECCCCEEEeCEEEECCCC
Confidence 2455678999999999995
|
|
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00028 Score=69.79 Aligned_cols=37 Identities=41% Similarity=0.498 Sum_probs=33.5
Q ss_pred cEEEECccHHHHHHHHHHHhhCCC-CcEEEEcCCCCCCCc
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQ-STVDIYEKLPVPFGL 53 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g-~~v~lie~~~~~gg~ 53 (388)
||||||+|.||++||..+++ .| .+|+|+|+.+..||.
T Consensus 1 DVvVVG~G~AGl~AA~~aa~--~G~~~V~vlEk~~~~gg~ 38 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKK--AGAANVVLLEKMPVIGGN 38 (439)
T ss_pred CEEEECCCHHHHHHHHHHHH--cCCccEEEEecCCCCCCc
Confidence 69999999999999999999 89 999999998776543
|
This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. |
| >PRK11259 solA N-methyltryptophan oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00032 Score=67.77 Aligned_cols=36 Identities=17% Similarity=0.243 Sum_probs=32.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
.+||+|||||.+|+++|..|++ .|.+|+|+|+....
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~--~g~~V~lie~~~~~ 38 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLAR--RGLRVLGLDRFMPP 38 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHH--CCCeEEEEecccCC
Confidence 4799999999999999999999 89999999998543
|
|
| >PTZ00367 squalene epoxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00032 Score=71.26 Aligned_cols=36 Identities=28% Similarity=0.239 Sum_probs=33.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
+..++|+|||||++|+++|..|++ .|.+|+|+|+.+
T Consensus 31 ~~~~dViIVGaGiaGlalA~aLar--~G~~V~VlEr~~ 66 (567)
T PTZ00367 31 NYDYDVIIVGGSIAGPVLAKALSK--QGRKVLMLERDL 66 (567)
T ss_pred ccCccEEEECCCHHHHHHHHHHHh--cCCEEEEEcccc
Confidence 346899999999999999999999 899999999875
|
|
| >PTZ00363 rab-GDP dissociation inhibitor; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00031 Score=69.10 Aligned_cols=43 Identities=14% Similarity=0.053 Sum_probs=39.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~ 55 (388)
...+||+|||+|.+|+.+|..|.+ .|.+|+++|+++..||.+.
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~--~GkkVLhlD~n~~yGG~~a 44 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSV--NGKKVLHMDRNPYYGGESA 44 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhh--CCCEEEEecCCCCcCcccc
Confidence 345899999999999999999999 9999999999999998864
|
|
| >PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0011 Score=63.67 Aligned_cols=43 Identities=21% Similarity=0.279 Sum_probs=32.8
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEcccc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
..++.+. ...++++..+ +++|.+|.. .+++.+.+|.||+|||.
T Consensus 108 ~~nl~i~-~~~V~~l~~e-~~~v~GV~~--------~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 108 HPNLTII-QGEVTDLIVE-NGKVKGVVT--------KDGEEIEADAVVLATGT 150 (392)
T ss_dssp STTEEEE-ES-EEEEEEC-TTEEEEEEE--------TTSEEEEECEEEE-TTT
T ss_pred CCCeEEE-EcccceEEec-CCeEEEEEe--------CCCCEEecCEEEEeccc
Confidence 4678885 5788888764 488888864 56679999999999998
|
Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A. |
| >PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00093 Score=66.27 Aligned_cols=34 Identities=32% Similarity=0.534 Sum_probs=27.2
Q ss_pred cEEEECccHHHHHHHHHHHhhCCC-CcEEEEcCCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQ-STVDIYEKLP 48 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g-~~v~lie~~~ 48 (388)
+|+|||||+||..+|..|++..+. .+|+|+|+..
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~~ 35 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESPD 35 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-SS
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecCC
Confidence 699999999999999999996443 8999999874
|
This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A .... |
| >PRK07121 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00035 Score=70.18 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=36.1
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
..||||||+|.||++||..+++ .|.+|+|+|+.+..||..
T Consensus 20 ~~DVvVVGaG~AGl~AA~~aae--~G~~VillEK~~~~gG~s 59 (492)
T PRK07121 20 EADVVVVGFGAAGACAAIEAAA--AGARVLVLERAAGAGGAT 59 (492)
T ss_pred ccCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCCCCCCcc
Confidence 5799999999999999999999 899999999988766543
|
|
| >PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00043 Score=69.73 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=35.0
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
...+||+|||||.+|+++|..|++ .|++|+|+|+++..+|
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~--rGl~V~LvEk~d~~~G 43 (508)
T PRK12266 4 METYDLLVIGGGINGAGIARDAAG--RGLSVLLCEQDDLASA 43 (508)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCC
Confidence 345899999999999999999999 8999999999865433
|
|
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00037 Score=72.05 Aligned_cols=36 Identities=39% Similarity=0.459 Sum_probs=32.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCC-CCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLP-QSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~-g~~v~lie~~~~ 49 (388)
...+|+||||||+||.+|..|++ . |++|+|||+.+.
T Consensus 31 ~~~dVlIVGAGPaGL~lA~~Lar--~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 31 DEVDVLIVGCGPAGLTLAAQLSA--FPDITTRIVERKPG 67 (634)
T ss_pred CCCCEEEECCCHHHHHHHHHHhc--CCCCcEEEEEcCCC
Confidence 46799999999999999999998 6 999999998754
|
|
| >TIGR01377 soxA_mon sarcosine oxidase, monomeric form | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00038 Score=67.36 Aligned_cols=34 Identities=24% Similarity=0.407 Sum_probs=31.4
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
+||+|||||.+|+++|..|.+ .|.+|+|+|+.+.
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~--~g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAK--HGKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCC
Confidence 489999999999999999999 8999999999754
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >TIGR02032 GG-red-SF geranylgeranyl reductase family | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0032 Score=58.30 Aligned_cols=47 Identities=9% Similarity=0.037 Sum_probs=33.4
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
+.|+++++++.++++..++ +.+ .+.+ ++++.++.+|.||.|+|....
T Consensus 103 ~~gv~~~~~~~v~~~~~~~-~~~-~~~~-------~~~~~~~~a~~vv~a~G~~s~ 149 (295)
T TIGR02032 103 EAGAELRLGTTVLDVEIHD-DRV-VVIV-------RGGEGTVTAKIVIGADGSRSI 149 (295)
T ss_pred HcCCEEEeCcEEeeEEEeC-CEE-EEEE-------cCccEEEEeCEEEECCCcchH
Confidence 5689999999999887644 322 2222 234467999999999998653
|
This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates. |
| >PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00046 Score=70.88 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=33.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
...||+|||+|.||++||..+++ .|.+|+|+|+....
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~--~G~~V~lveK~~~~ 47 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAE--AGLKTACITKVFPT 47 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHH--cCCcEEEEEccCCC
Confidence 35799999999999999999999 89999999997543
|
|
| >PRK07236 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0065 Score=59.01 Aligned_cols=134 Identities=11% Similarity=0.069 Sum_probs=71.5
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCccccc------CCHHHHHHHhcCCC
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVA------FTIKEFREMTKLPH 225 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~------~~~~el~~l~~~~~ 225 (388)
..+|+|||||.+|+.+|..|+ +.|. +|+++.|.+..... +.+.-++.+..+.-
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~--------------------~~G~-~v~v~E~~~~~~~~~g~gi~l~~~~~~~l~~lg~ 64 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLR--------------------RAGW-DVDVFERSPTELDGRGAGIVLQPELLRALAEAGV 64 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHH--------------------hCCC-CEEEEecCCCCcCCCCceeEeCHHHHHHHHHcCC
Confidence 578999999999999999886 3454 69999988643211 22322222222110
Q ss_pred c----------eEEecccccccchhhhcc-ccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeE
Q psy4525 226 V----------QTVFRNEQLCGVHEASAT-LARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITG 294 (388)
Q Consensus 226 ~----------~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~ 294 (388)
. ...+....-..+...... ....+..+...+...+ .++.+++++.++.+..++ +.+ .
T Consensus 65 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~----------~~~~i~~~~~v~~i~~~~-~~v-~ 132 (386)
T PRK07236 65 ALPADIGVPSRERIYLDRDGRVVQRRPMPQTQTSWNVLYRALRAAF----------PAERYHLGETLVGFEQDG-DRV-T 132 (386)
T ss_pred CcccccccCccceEEEeCCCCEeeccCCCccccCHHHHHHHHHHhC----------CCcEEEcCCEEEEEEecC-CeE-E
Confidence 0 000100000000000000 0011233334443221 245789999999997643 333 2
Q ss_pred EEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 295 INFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 295 v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.+ .+++++.||+||.|-|.+...
T Consensus 133 v~~--------~~g~~~~ad~vIgADG~~S~v 156 (386)
T PRK07236 133 ARF--------ADGRRETADLLVGADGGRSTV 156 (386)
T ss_pred EEE--------CCCCEEEeCEEEECCCCCchH
Confidence 443 334579999999999976544
|
|
| >PLN03000 amine oxidase | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00048 Score=72.25 Aligned_cols=41 Identities=34% Similarity=0.448 Sum_probs=38.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
..++|+|||||++|+.+|..|.+ .|++|+|+|+.+.+||.+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~--~G~~V~VlE~~~riGGRi 223 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMR--FGFKVTVLEGRKRPGGRV 223 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHH--CCCcEEEEEccCcCCCCc
Confidence 45899999999999999999999 899999999999999976
|
|
| >PRK13369 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.00054 Score=68.97 Aligned_cols=40 Identities=20% Similarity=0.177 Sum_probs=35.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
...+||+|||||.+|+++|..|++ .|.+|+|+|+.+..+|
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~--rG~~V~LlEk~d~~~G 43 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAG--RGLKVLLCEKDDLAQG 43 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHh--CCCcEEEEECCCCCCC
Confidence 345899999999999999999999 8999999999965443
|
|
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0004 Score=68.71 Aligned_cols=34 Identities=26% Similarity=0.353 Sum_probs=29.7
Q ss_pred CcEEEECccHHHHHHHHHHHhhC--CCCcEEEEcCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLL--PQSTVDIYEKL 47 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~--~g~~v~lie~~ 47 (388)
+||+||||||+|+++|..|++.. .|++|+|||+.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~ 36 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAV 36 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCC
Confidence 58999999999999999998721 48999999994
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364 | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00051 Score=66.15 Aligned_cols=34 Identities=24% Similarity=0.295 Sum_probs=31.4
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
+||+|||||.+|+++|..|++ .|.+|+|+|+...
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~--~G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAAR--RGLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCC
Confidence 489999999999999999999 8999999999754
|
This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases. |
| >PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.00049 Score=70.56 Aligned_cols=37 Identities=30% Similarity=0.490 Sum_probs=33.1
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
+.||+|||+|.||++||..+++ .|.+|+|+|+.+..+
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~--~G~~V~lieK~~~~~ 39 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAE--AGVHVDLFSLVPVKR 39 (589)
T ss_pred CccEEEECchHHHHHHHHHHHH--cCCcEEEEEccCCCC
Confidence 4599999999999999999999 899999999876543
|
|
| >COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.00052 Score=66.48 Aligned_cols=39 Identities=23% Similarity=0.291 Sum_probs=34.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
..+++|+|||||.+|+++|.+|.+ .|.+|+++|+....+
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~--~G~~V~vie~~~~~~ 40 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAE--RGADVTVLEAGEAGG 40 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHH--cCCEEEEEecCccCC
Confidence 346899999999999999999999 899999999886543
|
|
| >KOG2820|consensus | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0024 Score=59.05 Aligned_cols=38 Identities=29% Similarity=0.490 Sum_probs=33.4
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
....+++|||||.-|+++|..|++ .|.++.++|+.+.+
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK--~g~killLeqf~~p 42 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAK--RGDKILLLEQFPLP 42 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHh--cCCeEEEEeccCCC
Confidence 345799999999999999999999 89999999987543
|
|
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0027 Score=64.14 Aligned_cols=48 Identities=13% Similarity=0.147 Sum_probs=33.3
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCV 327 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~ 327 (388)
..++.++++..++.+..++ + ...+. ..++..+.+|.+|+|||..|..+
T Consensus 279 ~~gv~i~~~~~V~~I~~~~-~-~~~v~--------~~~g~~i~~d~lIlAtGa~~~~~ 326 (515)
T TIGR03140 279 QYPIDLMENQRAKKIETED-G-LIVVT--------LESGEVLKAKSVIVATGARWRKL 326 (515)
T ss_pred HhCCeEEcCCEEEEEEecC-C-eEEEE--------ECCCCEEEeCEEEECCCCCcCCC
Confidence 4578898888888886532 2 12232 23345799999999999987543
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >KOG2495|consensus | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00053 Score=65.12 Aligned_cols=90 Identities=16% Similarity=0.177 Sum_probs=65.7
Q ss_pred CcEEEECccHHHHHHHHHHHhhC------------CCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCc
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLL------------PQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRV 81 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~------------~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i 81 (388)
-.+|||||||.|+.+|..|+... ..++||++|..+.+- +. -.+.+.++.++++.+.++
T Consensus 219 Lh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~iL--------~m--Fdkrl~~yae~~f~~~~I 288 (491)
T KOG2495|consen 219 LHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHIL--------NM--FDKRLVEYAENQFVRDGI 288 (491)
T ss_pred EEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhHH--------HH--HHHHHHHHHHHHhhhccc
Confidence 47999999999999999998642 235899999875431 11 245677778888899999
Q ss_pred EEEceEEEEE----Eeeec--cc---ccccCEEEEeeCCCC
Q psy4525 82 NFYGNICLGQ----DISLG--DL---TNAYHAVVLTYGADN 113 (388)
Q Consensus 82 ~~~~~~~v~~----~~~~~--~~---~~~yd~lvlAtG~~~ 113 (388)
++..++.|.. ++..+ ++ +..|--||.|||..+
T Consensus 289 ~~~~~t~Vk~V~~~~I~~~~~~g~~~~iPYG~lVWatG~~~ 329 (491)
T KOG2495|consen 289 DLDTGTMVKKVTEKTIHAKTKDGEIEEIPYGLLVWATGNGP 329 (491)
T ss_pred eeecccEEEeecCcEEEEEcCCCceeeecceEEEecCCCCC
Confidence 9998877632 22222 22 237999999999877
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0023 Score=64.78 Aligned_cols=48 Identities=6% Similarity=0.137 Sum_probs=33.2
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCV 327 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~ 327 (388)
+.++.+++++.+..+...+ ....+.+ .++.++.+|.||+|||.+|..+
T Consensus 278 ~~gv~i~~~~~V~~I~~~~--~~~~V~~--------~~g~~i~a~~vViAtG~~~r~~ 325 (517)
T PRK15317 278 EYDVDIMNLQRASKLEPAA--GLIEVEL--------ANGAVLKAKTVILATGARWRNM 325 (517)
T ss_pred HCCCEEEcCCEEEEEEecC--CeEEEEE--------CCCCEEEcCEEEECCCCCcCCC
Confidence 4578888888888887532 2222322 3345799999999999987653
|
|
| >PRK05257 malate:quinone oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0005 Score=68.84 Aligned_cols=40 Identities=20% Similarity=0.369 Sum_probs=34.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
...+||+|||||..|+++|..|.+..++.+|+|+||.+.+
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~ 42 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGV 42 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCch
Confidence 3457999999999999999999986568999999998654
|
|
| >PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.003 Score=60.03 Aligned_cols=65 Identities=14% Similarity=0.170 Sum_probs=41.1
Q ss_pred hhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 249 RKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+..+.+.|...+. +.++++++++.++.+..+.++....+.. . .++..+++.||+||-|-|.+...
T Consensus 110 r~~l~~~L~~~~~--------~~gv~i~~~~~v~~~~~d~~~~~~~~~~--~---~~g~~~~i~adlvVgADG~~S~v 174 (356)
T PF01494_consen 110 RPELDRALREEAE--------ERGVDIRFGTRVVSIEQDDDGVTVVVRD--G---EDGEEETIEADLVVGADGAHSKV 174 (356)
T ss_dssp HHHHHHHHHHHHH--------HHTEEEEESEEEEEEEEETTEEEEEEEE--T---CTCEEEEEEESEEEE-SGTT-HH
T ss_pred HHHHHHhhhhhhh--------hhhhhheeeeeccccccccccccccccc--c---cCCceeEEEEeeeecccCcccch
Confidence 4455555555432 5679999999999887654332222221 1 13455689999999999998754
|
In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C .... |
| >PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00052 Score=69.29 Aligned_cols=39 Identities=23% Similarity=0.215 Sum_probs=35.0
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
..||||||+| ||++||..+++ .|.+|+|+|+.+..||..
T Consensus 7 ~~DVvVVG~G-aGl~aA~~aa~--~G~~V~vlEk~~~~Gg~t 45 (513)
T PRK12837 7 EVDVLVAGSG-GGVAGAYTAAR--EGLSVALVEATDKFGGTT 45 (513)
T ss_pred ccCEEEECch-HHHHHHHHHHH--CCCcEEEEecCCCCCcce
Confidence 5799999999 99999999999 899999999988766544
|
|
| >PLN02976 amine oxidase | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.00063 Score=74.16 Aligned_cols=43 Identities=26% Similarity=0.373 Sum_probs=39.4
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~ 55 (388)
...++|+|||||++|+++|..|.+ .|++|+|||+.+.+||.+.
T Consensus 691 ~~~~dV~IIGAG~AGLaAA~~L~~--~G~~V~VlEa~~~vGGri~ 733 (1713)
T PLN02976 691 VDRKKIIVVGAGPAGLTAARHLQR--QGFSVTVLEARSRIGGRVY 733 (1713)
T ss_pred CCCCcEEEECchHHHHHHHHHHHH--CCCcEEEEeeccCCCCcee
Confidence 446899999999999999999999 8999999999999999873
|
|
| >COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.0039 Score=60.85 Aligned_cols=136 Identities=12% Similarity=0.148 Sum_probs=80.7
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCccccc------CCHHHHHHHhcCCCc
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVA------FTIKEFREMTKLPHV 226 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~------~~~~el~~l~~~~~~ 226 (388)
-.|+|||+|++|.-+|..|+ +.| -+|.++.|....-.+ .++..+.++...+..
T Consensus 4 ~DVvIVGaGPAGs~aA~~la--------------------~~G-~~VlvlEk~~~~G~k~~~~~~~~~~~l~~l~~~~~~ 62 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLA--------------------KAG-LDVLVLEKGSEPGAKPCCGGGLSPRALEELIPDFDE 62 (396)
T ss_pred eeEEEECCchHHHHHHHHHH--------------------HcC-CeEEEEecCCCCCCCccccceechhhHHHhCCCcch
Confidence 36999999999999999876 455 479999997665443 334444444433321
Q ss_pred --eEEecccccc------cchhh-hccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEE
Q psy4525 227 --QTVFRNEQLC------GVHEA-SATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINF 297 (388)
Q Consensus 227 --~~~~~~~~~~------~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~ 297 (388)
........+. .+... .....-.+.++-+.|...+ .+.|.+++..+.++.+..++++.+..+.
T Consensus 63 ~i~~~v~~~~~~~~~~~~~~~~~~~~~y~v~R~~fd~~La~~A--------~~aGae~~~~~~~~~~~~~~~~~~~~~~- 133 (396)
T COG0644 63 EIERKVTGARIYFPGEKVAIEVPVGEGYIVDRAKFDKWLAERA--------EEAGAELYPGTRVTGVIREDDGVVVGVR- 133 (396)
T ss_pred hhheeeeeeEEEecCCceEEecCCCceEEEEhHHhhHHHHHHH--------HHcCCEEEeceEEEEEEEeCCcEEEEEE-
Confidence 1111111110 00000 0000001344444444332 2689999999999999887656555543
Q ss_pred ccCccccCCceeEEecceEEEccccCCcc
Q psy4525 298 ANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 298 ~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
.++ .++.++.||.|.|.+...
T Consensus 134 -------~~~-~e~~a~~vI~AdG~~s~l 154 (396)
T COG0644 134 -------AGD-DEVRAKVVIDADGVNSAL 154 (396)
T ss_pred -------cCC-EEEEcCEEEECCCcchHH
Confidence 222 689999999999987654
|
|
| >TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00051 Score=68.63 Aligned_cols=36 Identities=19% Similarity=0.363 Sum_probs=32.5
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
.||+|||||.+|+++|..|++..++.+|+|+|+.+.
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~ 36 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDA 36 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 489999999999999999999656999999999754
|
This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase. |
| >PRK07045 putative monooxygenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.008 Score=58.37 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=36.7
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
..++++++++.++.+..++++.+..+.+ .+++++.+|.||.|.|.+..
T Consensus 119 ~~gv~i~~~~~v~~i~~~~~~~~~~v~~--------~~g~~~~~~~vIgADG~~S~ 166 (388)
T PRK07045 119 LPNVRLRFETSIERIERDADGTVTSVTL--------SDGERVAPTVLVGADGARSM 166 (388)
T ss_pred CCCeeEEeCCEEEEEEECCCCcEEEEEe--------CCCCEEECCEEEECCCCChH
Confidence 3579999999999998765555555654 33457999999999998753
|
|
| >PRK12834 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.00068 Score=69.05 Aligned_cols=39 Identities=23% Similarity=0.321 Sum_probs=35.3
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC--CCCCc
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP--VPFGL 53 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~--~~gg~ 53 (388)
..||+|||+|.|||+||..+++ .|.+|+|+|+.+ ..||.
T Consensus 4 ~~DVvVVG~G~AGl~AAl~Aa~--~G~~VivlEK~~~~~~GG~ 44 (549)
T PRK12834 4 DADVIVVGAGLAGLVAAAELAD--AGKRVLLLDQENEANLGGQ 44 (549)
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCCCCCCCCc
Confidence 4799999999999999999999 899999999998 56664
|
|
| >TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0006 Score=66.41 Aligned_cols=34 Identities=32% Similarity=0.419 Sum_probs=31.2
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
.+|+|||||++|+.+|..|++ .|.+|+|||+.+.
T Consensus 1 ~~VvVIGgGlAGleaA~~LAr--~G~~V~LiE~rp~ 34 (433)
T TIGR00137 1 TPVHVIGGGLAGSEAAWQLAQ--AGVPVILYEMRPE 34 (433)
T ss_pred CCEEEECCCHHHHHHHHHHHh--CCCcEEEEecccc
Confidence 379999999999999999999 8999999997655
|
This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO. |
| >KOG0405|consensus | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0013 Score=60.95 Aligned_cols=91 Identities=12% Similarity=0.074 Sum_probs=66.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
..+++++|||||+.++..|--++. .|.++.+|=|.+.+ -....+.+.+...+.++..|++++.++.+.
T Consensus 187 e~Pkr~vvvGaGYIavE~Agi~~g--LgsethlfiR~~kv----------LR~FD~~i~~~v~~~~~~~ginvh~~s~~~ 254 (478)
T KOG0405|consen 187 EQPKRVVVVGAGYIAVEFAGIFAG--LGSETHLFIRQEKV----------LRGFDEMISDLVTEHLEGRGINVHKNSSVT 254 (478)
T ss_pred hcCceEEEEccceEEEEhhhHHhh--cCCeeEEEEecchh----------hcchhHHHHHHHHHHhhhcceeecccccce
Confidence 567999999999999999999999 89999988777543 111234456667777888899999887764
Q ss_pred EEeee----------cccccccCEEEEeeCCCC
Q psy4525 91 QDISL----------GDLTNAYHAVVLTYGADN 113 (388)
Q Consensus 91 ~~~~~----------~~~~~~yd~lvlAtG~~~ 113 (388)
..+.. .+....+|.|+.|+|..|
T Consensus 255 ~v~K~~~g~~~~i~~~~~i~~vd~llwAiGR~P 287 (478)
T KOG0405|consen 255 KVIKTDDGLELVITSHGTIEDVDTLLWAIGRKP 287 (478)
T ss_pred eeeecCCCceEEEEeccccccccEEEEEecCCC
Confidence 33222 122236899999999554
|
|
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.00071 Score=66.05 Aligned_cols=36 Identities=19% Similarity=0.376 Sum_probs=31.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCC----CcEEEEcCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQ----STVDIYEKLP 48 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g----~~v~lie~~~ 48 (388)
...++|+||||||+|+++|..|++ .| ++|+|+|+.+
T Consensus 9 ~~~~dv~IvGgGpaG~~~A~~L~~--~g~~~g~~v~l~e~~~ 48 (398)
T PRK06996 9 APDFDIAIVGAGPVGLALAGWLAR--RSATRALSIALIDARE 48 (398)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhc--CCCcCCceEEEecCCC
Confidence 345799999999999999999998 65 5799999864
|
|
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.00073 Score=68.64 Aligned_cols=38 Identities=29% Similarity=0.363 Sum_probs=34.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
..||+|||+|.||+.||..+++ .|.+|+|+|+.+..+|
T Consensus 16 ~~DVlVIG~G~AGl~AAi~aae--~G~~VilleK~~~~~g 53 (541)
T PRK07804 16 AADVVVVGSGVAGLTAALAARR--AGRRVLVVTKAALDDG 53 (541)
T ss_pred ccCEEEECccHHHHHHHHHHHH--cCCeEEEEEccCCCCC
Confidence 5799999999999999999999 8999999999876543
|
|
| >COG0029 NadB Aspartate oxidase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0015 Score=63.42 Aligned_cols=33 Identities=33% Similarity=0.469 Sum_probs=29.8
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
+|+|||+|.|||++|..|.+ . ++|+|+.|.+..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~--~-~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAP--S-FRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCC--C-CcEEEEeCCCCC
Confidence 89999999999999999998 4 999999987654
|
|
| >PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0008 Score=68.89 Aligned_cols=40 Identities=25% Similarity=0.167 Sum_probs=36.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCc
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGL 53 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~ 53 (388)
...||||||+|.||++||..+++ .|.+|+|+|+.+..||.
T Consensus 10 ~~~DVvVVG~G~AGl~AA~~aae--~G~~VivlEk~~~~gG~ 49 (584)
T PRK12835 10 REVDVLVVGSGGGGMTAALTAAA--RGLDTLVVEKSAHFGGS 49 (584)
T ss_pred CcCCEEEECccHHHHHHHHHHHH--CCCcEEEEEcCCCCCch
Confidence 45799999999999999999999 89999999999877764
|
|
| >COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0023 Score=63.07 Aligned_cols=140 Identities=26% Similarity=0.358 Sum_probs=74.7
Q ss_pred CCcEEEECccH-HHHHHHHHHHhhCCCC----cEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCc-----E
Q psy4525 13 KPNVCIVGSGP-AGFYCAQQILKLLPQS----TVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRV-----N 82 (388)
Q Consensus 13 ~~~vvIIGaG~-aGl~aA~~l~~~~~g~----~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i-----~ 82 (388)
..+.+++|.++ +++..|..+.. .+. .+-+.+.-|.+.++.++|. ....++...+.+.. +
T Consensus 5 ~~~e~~~~~~~~~a~~~a~rCl~--C~~~C~~~cp~~~~IP~~~~lv~~g~---------~~~a~~~i~~tn~~p~~~gR 73 (457)
T COG0493 5 DFREAVVGSGPEAAIYEAARCLD--CGDPCITGCPVHNDIPEPIGLVREGV---------DHEAIKLIHKTNNLPAITGR 73 (457)
T ss_pred cceeeecCCCHHHHHHHHHHHHc--CCCccccCCcCCCcCCCHHHHHhcCC---------cHHHHHHHHHhCCCccccCc
Confidence 57899999999 88888888877 332 1222222233333333333 11112222222221 1
Q ss_pred EE--ceEEEEEEeee-cccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEc
Q psy4525 83 FY--GNICLGQDISL-GDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILG 159 (388)
Q Consensus 83 ~~--~~~~v~~~~~~-~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG 159 (388)
+. .+...+..+.. .+....|+.|..+.|....+...+++.. .....+++|+|||
T Consensus 74 vcp~~~~ceg~cv~~~~~~~v~i~~le~~i~d~~~~~g~i~~~~-----------------------~~~~tg~~VaviG 130 (457)
T COG0493 74 VCPLGNLCEGACVLGIEELPVNIGALERAIGDKADREGWIPGEL-----------------------PGSRTGKKVAVIG 130 (457)
T ss_pred cCCCCCceeeeeeeccCCCchhhhhHHHHHhhHHHHhCCCCCCC-----------------------CCCCCCCEEEEEC
Confidence 11 12223333332 2333467777766665442222232221 1123469999999
Q ss_pred CChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 160 QGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 160 gG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
+|+.|+.+|..|+ +.+ ..||++.|...
T Consensus 131 aGPAGl~~a~~L~--------------------~~G-~~Vtv~e~~~~ 157 (457)
T COG0493 131 AGPAGLAAADDLS--------------------RAG-HDVTVFERVAL 157 (457)
T ss_pred CCchHhhhHHHHH--------------------hCC-CeEEEeCCcCC
Confidence 9999999999887 234 46999877653
|
|
| >COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0093 Score=59.00 Aligned_cols=125 Identities=14% Similarity=0.155 Sum_probs=68.2
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCccc----c-------cCCHHHHHHH
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQ----V-------AFTIKEFREM 220 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~----~-------~~~~~el~~l 220 (388)
..+|+|||+|.+|+=+|..|. +.+...+.++++++.+- . ..++.....+
T Consensus 8 ~~~v~IIGaG~sGlaaa~~L~--------------------~~g~~~~~i~Ek~~~~Gg~W~~~ry~~l~~~~p~~~~~~ 67 (443)
T COG2072 8 HTDVAIIGAGQSGLAAAYALK--------------------QAGVPDFVIFEKRDDVGGTWRYNRYPGLRLDSPKWLLGF 67 (443)
T ss_pred cccEEEECCCHHHHHHHHHHH--------------------HcCCCcEEEEEccCCcCCcchhccCCceEECCchheecc
Confidence 468999999999999999765 45555588888875221 1 1112221111
Q ss_pred hcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccC
Q psy4525 221 TKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQ 300 (388)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~ 300 (388)
...|.. -...+...+.++..+...+..+ .....+.++..+..+..+.++..-.+...++
T Consensus 68 ~~~p~~-----------~~~~~~~~~~~~~y~~~~~~~y----------~~~~~i~~~~~v~~~~~~~~~~~w~V~~~~~ 126 (443)
T COG2072 68 PFLPFR-----------WDEAFAPFAEIKDYIKDYLEKY----------GLRFQIRFNTRVEVADWDEDTKRWTVTTSDG 126 (443)
T ss_pred CCCccC-----------CcccCCCcccHHHHHHHHHHHc----------CceeEEEcccceEEEEecCCCCeEEEEEcCC
Confidence 111110 0112222233444454555443 2345555566666566655555545544322
Q ss_pred ccccCCceeEEecceEEEccccC
Q psy4525 301 QALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 301 ~~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
+..+ +.||.||+|||+-
T Consensus 127 -----~~~~-~~a~~vV~ATG~~ 143 (443)
T COG2072 127 -----GTGE-LTADFVVVATGHL 143 (443)
T ss_pred -----Ceee-EecCEEEEeecCC
Confidence 1122 7899999999985
|
|
| >PRK12839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0011 Score=67.64 Aligned_cols=41 Identities=27% Similarity=0.248 Sum_probs=37.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
...+|+|||+|.+|+++|..+.+ .|.+|+|+|+...+||..
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~--~g~~v~~iek~~~~gg~~ 47 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAY--GGAKVLVVEKASTCGGAT 47 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCccc
Confidence 35799999999999999999999 899999999998888765
|
|
| >PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00096 Score=67.99 Aligned_cols=40 Identities=28% Similarity=0.213 Sum_probs=36.7
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
..||+|||+|.+|+++|..+++ .|.+|+|+|+.+..||..
T Consensus 6 ~~DvvIiG~G~aGl~aA~~~a~--~G~~v~liEk~~~~gG~~ 45 (557)
T PRK12844 6 TYDVVVVGSGGGGMCAALAAAD--SGLEPLIVEKQDKVGGST 45 (557)
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCcee
Confidence 5799999999999999999999 899999999998777764
|
|
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00085 Score=68.65 Aligned_cols=35 Identities=29% Similarity=0.339 Sum_probs=31.8
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
||+|||+|.||++||..+++ .|.+|+|+|+.+..+
T Consensus 1 DVlVVG~G~AGl~AA~~aae--~G~~V~lleK~~~~~ 35 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAK--AGLNTAVISKVYPTR 35 (566)
T ss_pred CEEEECccHHHHHHHHHHHH--CCCcEEEEeccCCCC
Confidence 69999999999999999999 899999999976543
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >PRK05868 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.012 Score=56.79 Aligned_cols=47 Identities=13% Similarity=0.178 Sum_probs=33.9
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
..+++++++.+++.+..++ +.+ .+.+ .+++++.+|+||-|-|.+...
T Consensus 116 ~~~v~i~~~~~v~~i~~~~-~~v-~v~~--------~dg~~~~adlvIgADG~~S~v 162 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDG-DSV-RVTF--------ERAAAREFDLVIGADGLHSNV 162 (372)
T ss_pred cCCcEEEeCCEEEEEEecC-CeE-EEEE--------CCCCeEEeCEEEECCCCCchH
Confidence 4689999999999987543 322 3444 334578999999999987654
|
|
| >TIGR02462 pyranose_ox pyranose oxidase | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00089 Score=67.39 Aligned_cols=39 Identities=28% Similarity=0.239 Sum_probs=35.8
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
+||+|||+||+|+.+|..|.+ .|++|++||+....|+.|
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~--~g~~v~~~e~~~~~~~~~ 39 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVD--AGLKVAMVEIGAADSFLK 39 (544)
T ss_pred CcEEEECCchHHHHHHHHHHH--CCCeEEEEeccCccCCCc
Confidence 589999999999999999999 899999999998887655
|
Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation. |
| >PLN02463 lycopene beta cyclase | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0072 Score=59.79 Aligned_cols=132 Identities=12% Similarity=0.177 Sum_probs=69.1
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCccccc--CC--HHHHHHH------h-
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVA--FT--IKEFREM------T- 221 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~--~~--~~el~~l------~- 221 (388)
-+|+|||||.+|+-+|..|+ +.| .+|.++.+.+....+ +. ..++.++ .
T Consensus 29 ~DVvIVGaGpAGLalA~~La--------------------~~G-l~V~liE~~~~~~~p~~~g~w~~~l~~lgl~~~l~~ 87 (447)
T PLN02463 29 VDLVVVGGGPAGLAVAQQVS--------------------EAG-LSVCCIDPSPLSIWPNNYGVWVDEFEALGLLDCLDT 87 (447)
T ss_pred ceEEEECCCHHHHHHHHHHH--------------------HCC-CeEEEeccCccchhccccchHHHHHHHCCcHHHHHh
Confidence 37999999999999999776 244 369999886532221 11 1222211 0
Q ss_pred cCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCc
Q psy4525 222 KLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQ 301 (388)
Q Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~ 301 (388)
.-+.....+..............+ .+..+.+.+.+... +.|++++ ...++++..++ +. ..+.
T Consensus 88 ~w~~~~v~~~~~~~~~~~~~y~~V--~R~~L~~~Ll~~~~--------~~GV~~~-~~~V~~I~~~~-~~-~~V~----- 149 (447)
T PLN02463 88 TWPGAVVYIDDGKKKDLDRPYGRV--NRKKLKSKMLERCI--------ANGVQFH-QAKVKKVVHEE-SK-SLVV----- 149 (447)
T ss_pred hCCCcEEEEeCCCCccccCcceeE--EHHHHHHHHHHHHh--------hcCCEEE-eeEEEEEEEcC-Ce-EEEE-----
Confidence 111111111111100000000101 13444444444321 4577775 45677776543 22 2333
Q ss_pred cccCCceeEEecceEEEccccCCcc
Q psy4525 302 ALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 302 ~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.++.++.||.||.|+|+.+..
T Consensus 150 ---~~dG~~i~A~lVI~AdG~~s~l 171 (447)
T PLN02463 150 ---CDDGVKIQASLVLDATGFSRCL 171 (447)
T ss_pred ---ECCCCEEEcCEEEECcCCCcCc
Confidence 3445689999999999998653
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.00086 Score=65.77 Aligned_cols=34 Identities=26% Similarity=0.471 Sum_probs=31.3
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
+|+|||||.+|+++|.+|++ .|.+|+|+|+...+
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~--~g~~V~vle~~~~~ 35 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQ--AGHEVTVIDRQPGP 35 (416)
T ss_pred EEEEECCcHHHHHHHHHHHH--CCCEEEEEeCCCch
Confidence 79999999999999999999 89999999997543
|
|
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.001 Score=65.72 Aligned_cols=37 Identities=30% Similarity=0.374 Sum_probs=32.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
..||+|||+|.||++||..+ . .|.+|+|+|+.+..+|
T Consensus 4 ~~DVvVVG~G~AGl~AA~~a-~--~G~~V~lleK~~~~gg 40 (433)
T PRK06175 4 YADVLIVGSGVAGLYSALNL-R--KDLKILMVSKGKLNEC 40 (433)
T ss_pred cccEEEECchHHHHHHHHHh-c--cCCCEEEEecCCCCCC
Confidence 46999999999999999997 4 5899999999876554
|
|
| >PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0012 Score=67.75 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=32.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
..||+|||+|.||+.||..+++ .|.+|+|+|+...
T Consensus 12 ~~DVlVIG~G~AGl~AAi~Aa~--~G~~V~vleK~~~ 46 (591)
T PRK07057 12 KFDVVIVGAGGSGMRASLQLAR--AGLSVAVLSKVFP 46 (591)
T ss_pred cCCEEEECccHHHHHHHHHHHH--CCCcEEEEeccCC
Confidence 4799999999999999999999 8999999999754
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00093 Score=69.65 Aligned_cols=35 Identities=29% Similarity=0.412 Sum_probs=32.2
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
.+|+|||||.+|+++|.+|++ .|.+|+|+|+...+
T Consensus 261 ~dVvIIGaGIaG~s~A~~La~--~G~~V~VlE~~~~~ 295 (662)
T PRK01747 261 RDAAIIGGGIAGAALALALAR--RGWQVTLYEADEAP 295 (662)
T ss_pred CCEEEECccHHHHHHHHHHHH--CCCeEEEEecCCCc
Confidence 599999999999999999999 89999999997543
|
|
| >PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.00098 Score=68.83 Aligned_cols=37 Identities=22% Similarity=0.213 Sum_probs=33.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
..||+|||+|.||+.||..+++ .|.+|+|+|+.+..+
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae--~G~~V~lieK~~~~~ 44 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARE--RGLRVAVVCKSLFGK 44 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHH--CCCCEEEEeccCCCC
Confidence 4799999999999999999999 899999999986543
|
|
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.001 Score=67.91 Aligned_cols=37 Identities=22% Similarity=0.322 Sum_probs=33.1
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
..||+|||+|.||++||..+++ .|.+|+|+|+.+..+
T Consensus 5 ~~DVvVVG~G~AGl~AAl~Aae--~G~~V~lveK~~~~~ 41 (566)
T PRK06452 5 EYDAVVIGGGLAGLMSAHEIAS--AGFKVAVISKVFPTR 41 (566)
T ss_pred cCcEEEECccHHHHHHHHHHHH--CCCcEEEEEccCCCC
Confidence 4699999999999999999999 899999999986543
|
|
| >PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.001 Score=68.58 Aligned_cols=38 Identities=21% Similarity=0.227 Sum_probs=33.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
..||+|||+|.||+.||..+++ .|.+|+|+|+.+..+|
T Consensus 29 ~~DVlVIG~G~AGl~AAi~Aa~--~G~~V~lveK~~~~~g 66 (617)
T PTZ00139 29 TYDAVVVGAGGAGLRAALGLVE--LGYKTACISKLFPTRS 66 (617)
T ss_pred ccCEEEECccHHHHHHHHHHHH--cCCcEEEEeccCCCCC
Confidence 4699999999999999999999 8999999999865443
|
|
| >TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0013 Score=64.33 Aligned_cols=38 Identities=29% Similarity=0.249 Sum_probs=32.2
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKLPV 49 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~~~ 49 (388)
...+||+|||||.+|+++|.+|.+. .|. +|+|+|+...
T Consensus 28 ~~~~dvvIIGgGi~G~s~A~~L~~~-~g~~~V~vle~~~~ 66 (407)
T TIGR01373 28 KPTYDVIIVGGGGHGLATAYYLAKE-HGITNVAVLEKGWL 66 (407)
T ss_pred CccCCEEEECCcHHHHHHHHHHHHh-cCCCeEEEEEcccc
Confidence 3568999999999999999999982 274 8999999753
|
Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms. |
| >TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.001 Score=66.32 Aligned_cols=37 Identities=32% Similarity=0.476 Sum_probs=32.3
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
..||+|||||.+|+++|.+|++..+|.+|+|+|+...
T Consensus 24 ~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 24 QADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred eeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 4799999999999999999998334899999998743
|
This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW. |
| >PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.001 Score=67.84 Aligned_cols=40 Identities=28% Similarity=0.231 Sum_probs=36.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
...||||||+| +|++||..+++ .|.+|+|+|+.+.+||..
T Consensus 15 ~e~DvvvvG~G-~G~~aA~~a~~--~G~~v~v~Ek~~~~GG~~ 54 (564)
T PRK12845 15 TTVDLLVVGSG-TGMAAALAAHE--LGLSVLIVEKSSYVGGST 54 (564)
T ss_pred ceeCEEEECCc-HHHHHHHHHHH--CCCcEEEEecCCCCcCcc
Confidence 36899999999 89999999999 999999999998888865
|
|
| >KOG2614|consensus | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0012 Score=62.78 Aligned_cols=36 Identities=31% Similarity=0.441 Sum_probs=32.6
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
..+|+|||||.+|+++|..|.+ .|++|+|+|+...+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r--~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHR--KGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHH--cCCeEEEEeecccc
Confidence 4689999999999999999999 99999999986543
|
|
| >PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0013 Score=67.54 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=33.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
...||+|||+|.||++||..+++ .|.+|+|+|+....+
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~--~G~~V~lleK~~~~~ 43 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQ--SGQSCALLSKVFPTR 43 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHH--cCCcEEEEEccCCCC
Confidence 35799999999999999999999 899999999986543
|
|
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0013 Score=66.96 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=32.6
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
.+||+|||||..|+++|..|++ .|.+|+|+|+.+.
T Consensus 6 ~~DVvIIGGGi~G~~iA~~La~--rG~~V~LlEk~d~ 40 (546)
T PRK11101 6 ETDVIIIGGGATGAGIARDCAL--RGLRCILVERHDI 40 (546)
T ss_pred cccEEEECcCHHHHHHHHHHHH--cCCeEEEEECCCC
Confidence 5899999999999999999999 8999999999754
|
|
| >TIGR01316 gltA glutamate synthase (NADPH), homotetrameric | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0044 Score=61.50 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=32.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
..++|+|||+|..|+.+|..+.+ .|.+|+++++.+.
T Consensus 271 ~gk~VvVIGgG~~a~d~A~~l~~--~G~~Vtlv~~~~~ 306 (449)
T TIGR01316 271 AGKSVVVIGGGNTAVDSARTALR--LGAEVHCLYRRTR 306 (449)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--cCCEEEEEeecCc
Confidence 45899999999999999999999 8999999998743
|
This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH. |
| >PRK13339 malate:quinone oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0012 Score=65.79 Aligned_cols=39 Identities=23% Similarity=0.373 Sum_probs=34.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
..+||||||||.+|+++|..|++..++.+|+|+||.+.+
T Consensus 5 ~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr~~~~ 43 (497)
T PRK13339 5 ESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVERLDSP 43 (497)
T ss_pred ccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEcCCCc
Confidence 457999999999999999999996668999999994444
|
|
| >PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0012 Score=68.18 Aligned_cols=37 Identities=22% Similarity=0.196 Sum_probs=33.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
..||+|||+|.||++||..+++ .|.+|+|+|+....+
T Consensus 50 ~~DVlVIG~G~AGl~AAl~Aae--~G~~VilveK~~~~~ 86 (635)
T PLN00128 50 TYDAVVVGAGGAGLRAAIGLSE--HGFNTACITKLFPTR 86 (635)
T ss_pred ecCEEEECccHHHHHHHHHHHh--cCCcEEEEEcCCCCC
Confidence 4699999999999999999999 899999999986544
|
|
| >PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.018 Score=56.46 Aligned_cols=49 Identities=6% Similarity=0.053 Sum_probs=34.2
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
.++++++++.++++..++++ + .+.+.+ .++..++.||+||.|.|.....
T Consensus 135 ~~v~i~~~~~v~~v~~~~~~-~-~v~~~~-----~~~~~~i~adlvIgADG~~S~v 183 (415)
T PRK07364 135 PNITWLCPAEVVSVEYQQDA-A-TVTLEI-----EGKQQTLQSKLVVAADGARSPI 183 (415)
T ss_pred CCcEEEcCCeeEEEEecCCe-e-EEEEcc-----CCcceEEeeeEEEEeCCCCchh
Confidence 47999999999998764433 2 244421 1233579999999999987654
|
|
| >COG3573 Predicted oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.01 Score=54.84 Aligned_cols=35 Identities=29% Similarity=0.441 Sum_probs=32.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
...+|+|||+|.|||.+|..++. .|.+|+++|.+.
T Consensus 4 ~~~dvivvgaglaglvaa~elA~--aG~~V~ildQEg 38 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELAD--AGKRVLILDQEG 38 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHh--cCceEEEEcccc
Confidence 35799999999999999999999 999999999764
|
|
| >PRK10157 putative oxidoreductase FixC; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0081 Score=59.22 Aligned_cols=45 Identities=16% Similarity=0.175 Sum_probs=33.1
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQS 324 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p 324 (388)
+.|+++++++.++++..+ ++.+..+. .++.++.||.||.|+|...
T Consensus 120 ~~Gv~i~~~~~V~~i~~~-~g~v~~v~---------~~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 120 EAGAQLITGIRVDNLVQR-DGKVVGVE---------ADGDVIEAKTVILADGVNS 164 (428)
T ss_pred HCCCEEECCCEEEEEEEe-CCEEEEEE---------cCCcEEECCEEEEEeCCCH
Confidence 568999999999988754 34544432 2234799999999999864
|
|
| >PTZ00383 malate:quinone oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0015 Score=65.33 Aligned_cols=38 Identities=21% Similarity=0.196 Sum_probs=32.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
..+||||||||..|+++|..|++..++.+|+|+|+.+.
T Consensus 44 ~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~ 81 (497)
T PTZ00383 44 DVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSD 81 (497)
T ss_pred CcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcc
Confidence 45899999999999999999998434479999999864
|
|
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0013 Score=67.99 Aligned_cols=36 Identities=28% Similarity=0.339 Sum_probs=32.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
..||+|||+|.|||+||..+++ .|.+|+|+|+...+
T Consensus 35 ~~DVlVVG~G~AGl~AAi~Aae--~G~~VilieK~~~~ 70 (640)
T PRK07573 35 KFDVIVVGTGLAGASAAATLGE--LGYNVKVFCYQDSP 70 (640)
T ss_pred ccCEEEECccHHHHHHHHHHHH--cCCcEEEEecCCCC
Confidence 4699999999999999999999 89999999986544
|
|
| >PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0012 Score=67.54 Aligned_cols=38 Identities=32% Similarity=0.304 Sum_probs=33.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCC---CcEEEEcCCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQ---STVDIYEKLPVPFG 52 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g---~~v~lie~~~~~gg 52 (388)
..||+|||+|.||++||..+++ .| .+|+|+|+.+..++
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~--~G~~~~~V~lleK~~~~~~ 45 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAE--RSGGKLSVAVVSKTQPMRS 45 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHH--hCCCCCcEEEEEcccCCCC
Confidence 4699999999999999999998 77 89999999865543
|
|
| >PRK09853 putative selenate reductase subunit YgfK; Provisional | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0051 Score=65.93 Aligned_cols=37 Identities=16% Similarity=0.294 Sum_probs=30.2
Q ss_pred CCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 150 LDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 150 ~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
..+++|+|||||++|+.+|..|+ +.| .+|+++.+.+.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~La--------------------r~G-~~VtV~Ek~~~ 573 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLA--------------------RAG-HPVTVFEREEN 573 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHH--------------------HcC-CeEEEEecccc
Confidence 35789999999999999999886 244 47999997754
|
|
| >PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0077 Score=58.57 Aligned_cols=47 Identities=9% Similarity=0.104 Sum_probs=34.5
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.|+++++++.++++..++ +.+ .+++ .+++++.+|.||.|.|..++.
T Consensus 125 ~~gv~i~~~~~v~~i~~~~-~~v-~v~~--------~~g~~~~a~~vV~AdG~~S~v 171 (392)
T PRK08773 125 AAGVQLHCPARVVALEQDA-DRV-RLRL--------DDGRRLEAALAIAADGAASTL 171 (392)
T ss_pred hCCCEEEcCCeEEEEEecC-CeE-EEEE--------CCCCEEEeCEEEEecCCCchH
Confidence 4689999999999987643 333 2433 334579999999999998754
|
|
| >PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0011 Score=61.81 Aligned_cols=54 Identities=11% Similarity=0.196 Sum_probs=38.7
Q ss_pred ceeEEEEecCcceeeeeC-CCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLN-DNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~-~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
..++++++++.|++|..+ .++++.+|++.+.... .....+.++.||+|.|.-..
T Consensus 205 ~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~--~~~~~~~ak~VIlaAGai~T 259 (296)
T PF00732_consen 205 RPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGG--VQRRIVAAKEVILAAGAIGT 259 (296)
T ss_dssp TTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTS--EEEEEEEEEEEEE-SHHHHH
T ss_pred cCCccEEcCcEEEEEeeeccccceeeeeeeecCCc--ceeeeccceeEEeccCCCCC
Confidence 458999999999999553 4678999988653200 12367789999999996533
|
These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A .... |
| >COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0069 Score=58.64 Aligned_cols=37 Identities=19% Similarity=0.284 Sum_probs=30.8
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCccc
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQ 209 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~ 209 (388)
.++++|||||.+|++.|..|+ +.|. +|+++.+.+.+-
T Consensus 124 ~~svLVIGGGvAGitAAl~La--------------------~~G~-~v~LVEKepsiG 160 (622)
T COG1148 124 SKSVLVIGGGVAGITAALELA--------------------DMGF-KVYLVEKEPSIG 160 (622)
T ss_pred ccceEEEcCcHHHHHHHHHHH--------------------HcCC-eEEEEecCCccc
Confidence 578999999999999999987 3454 599999887653
|
|
| >PLN02815 L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0017 Score=66.41 Aligned_cols=38 Identities=26% Similarity=0.204 Sum_probs=33.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
...||+|||+|.|||.||..+++ .| +|+|+|+.+..+|
T Consensus 28 ~~~DVlVVG~G~AGl~AAl~Aae--~G-~VvlleK~~~~gg 65 (594)
T PLN02815 28 KYFDFLVIGSGIAGLRYALEVAE--YG-TVAIITKDEPHES 65 (594)
T ss_pred cccCEEEECccHHHHHHHHHHhh--CC-CEEEEECCCCCCC
Confidence 35799999999999999999999 78 8999999876554
|
|
| >PLN02464 glycerol-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.0016 Score=67.19 Aligned_cols=39 Identities=23% Similarity=0.238 Sum_probs=34.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
..+||+|||||..|+++|..|.+ .|++|+|+|+.+..+|
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~--rGl~V~LvE~~d~a~G 108 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAAT--RGLRVGLVEREDFSSG 108 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHh--CCCEEEEEeccccCCC
Confidence 45899999999999999999999 8999999999854433
|
|
| >PRK06834 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.012 Score=59.09 Aligned_cols=135 Identities=14% Similarity=0.138 Sum_probs=74.0
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccc------cCCHHHHHH-------
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQV------AFTIKEFRE------- 219 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~------~~~~~el~~------- 219 (388)
.+|+|||+|.+|+-+|..|+ +.|. +|+++.|.+.... .+.+.-++-
T Consensus 4 ~dVlIVGaGp~Gl~lA~~La--------------------~~G~-~v~vlEr~~~~~~~~~Ra~~l~~~s~~~L~~lGl~ 62 (488)
T PRK06834 4 HAVVIAGGGPTGLMLAGELA--------------------LAGV-DVAIVERRPNQELVGSRAGGLHARTLEVLDQRGIA 62 (488)
T ss_pred ceEEEECCCHHHHHHHHHHH--------------------HCCC-cEEEEecCCCCCCCCcceeeECHHHHHHHHHcCcH
Confidence 57999999999999999886 3454 5999998764221 122222211
Q ss_pred --HhcC----CCceEEecccccccchh-hhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCce
Q psy4525 220 --MTKL----PHVQTVFRNEQLCGVHE-ASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAI 292 (388)
Q Consensus 220 --l~~~----~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v 292 (388)
+... ....+....-+...+.. .+..+.-.+..+.+.+.+.+. +.|+++++++.++.+..++++ +
T Consensus 63 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~q~~le~~L~~~l~--------~~gv~i~~~~~v~~v~~~~~~-v 133 (488)
T PRK06834 63 DRFLAQGQVAQVTGFAATRLDISDFPTRHNYGLALWQNHIERILAEWVG--------ELGVPIYRGREVTGFAQDDTG-V 133 (488)
T ss_pred HHHHhcCCccccceeeeEecccccCCCCCCccccccHHHHHHHHHHHHH--------hCCCEEEcCCEEEEEEEcCCe-E
Confidence 1100 00000000000000000 011111224445555554432 458999999999999865432 2
Q ss_pred eEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 293 TGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 293 ~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
.+++ .+++++.||.||.|.|.++..
T Consensus 134 -~v~~--------~~g~~i~a~~vVgADG~~S~v 158 (488)
T PRK06834 134 -DVEL--------SDGRTLRAQYLVGCDGGRSLV 158 (488)
T ss_pred -EEEE--------CCCCEEEeCEEEEecCCCCCc
Confidence 2332 223579999999999998754
|
|
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0015 Score=67.31 Aligned_cols=35 Identities=29% Similarity=0.299 Sum_probs=32.0
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCC--CCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLP--QSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~--g~~v~lie~~~~ 49 (388)
..||+|||+|.||+.||..+++ . |.+|+|+|+.+.
T Consensus 11 ~~DVlVIG~G~AGl~AAi~Aae--~~~G~~V~lieK~~~ 47 (608)
T PRK06854 11 DTDILIIGGGMAGCGAAFEAKE--WAPDLKVLIVEKANI 47 (608)
T ss_pred EeCEEEECcCHHHHHHHHHHHH--hCCCCeEEEEECCCc
Confidence 4799999999999999999998 6 899999999764
|
|
| >PRK06184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0078 Score=60.68 Aligned_cols=50 Identities=18% Similarity=0.131 Sum_probs=35.1
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.|+++++++.++++..++++ +. +.+.+ .++++++.||.||.|.|.+...
T Consensus 121 ~~gv~i~~~~~v~~i~~~~~~-v~-v~~~~-----~~~~~~i~a~~vVgADG~~S~v 170 (502)
T PRK06184 121 ELGHRVEFGCELVGFEQDADG-VT-ARVAG-----PAGEETVRARYLVGADGGRSFV 170 (502)
T ss_pred HCCCEEEeCcEEEEEEEcCCc-EE-EEEEe-----CCCeEEEEeCEEEECCCCchHH
Confidence 458999999999999865433 32 22211 2445789999999999988643
|
|
| >PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.013 Score=57.39 Aligned_cols=41 Identities=34% Similarity=0.517 Sum_probs=35.4
Q ss_pred CcEEEECccHHHHHHHHHHHhh--CCCCcEEEEcCCCCCCCce
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKL--LPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~--~~g~~v~lie~~~~~gg~~ 54 (388)
++.=|||+|.|+|+||.+|-+- .+|-+|+|+|+.+.+||.+
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsl 45 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSL 45 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcc
Confidence 5677999999999999999984 3678999999998888765
|
|
| >PRK07588 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.022 Score=55.39 Aligned_cols=46 Identities=15% Similarity=0.164 Sum_probs=33.7
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
.++++++++.++++..++ +.+ .+.+ .+++.+.+|+||-|-|.+...
T Consensus 115 ~~v~i~~~~~v~~i~~~~-~~v-~v~~--------~~g~~~~~d~vIgADG~~S~v 160 (391)
T PRK07588 115 GQVETIFDDSIATIDEHR-DGV-RVTF--------ERGTPRDFDLVIGADGLHSHV 160 (391)
T ss_pred cCeEEEeCCEEeEEEECC-CeE-EEEE--------CCCCEEEeCEEEECCCCCccc
Confidence 479999999999998654 333 2433 345568999999999987554
|
|
| >PRK12770 putative glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0051 Score=58.99 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=30.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCc-EEEEcCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQST-VDIYEKLP 48 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~-v~lie~~~ 48 (388)
.++++|||+|+.|+.+|..|.+ .+.+ |+++++.+
T Consensus 172 g~~vvViG~G~~g~e~A~~l~~--~g~~~Vtvi~~~~ 206 (352)
T PRK12770 172 GKKVVVVGAGLTAVDAALEAVL--LGAEKVYLAYRRT 206 (352)
T ss_pred CCEEEEECCCHHHHHHHHHHHH--cCCCeEEEEeecc
Confidence 4799999999999999999988 7887 99998764
|
|
| >PRK12831 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0098 Score=59.26 Aligned_cols=36 Identities=22% Similarity=0.351 Sum_probs=32.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
...++|+|||+|..|+.+|..+.+ .|.+|+++.+.+
T Consensus 279 ~~gk~VvVIGgG~va~d~A~~l~r--~Ga~Vtlv~r~~ 314 (464)
T PRK12831 279 KVGKKVAVVGGGNVAMDAARTALR--LGAEVHIVYRRS 314 (464)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHH--cCCEEEEEeecC
Confidence 356899999999999999999999 899999998764
|
|
| >PRK06134 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0019 Score=66.15 Aligned_cols=41 Identities=34% Similarity=0.332 Sum_probs=37.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
...||+|||+|++|+++|..+.+ .|.+|+|+|+.+..||..
T Consensus 11 ~~~dvvvvG~G~aG~~aa~~~~~--~g~~v~~iek~~~~gg~~ 51 (581)
T PRK06134 11 LECDVLVIGSGAAGLSAAVTAAW--HGLKVIVVEKDPVFGGTT 51 (581)
T ss_pred CccCEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCccc
Confidence 46899999999999999999999 899999999988777754
|
|
| >TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0019 Score=66.12 Aligned_cols=40 Identities=20% Similarity=0.311 Sum_probs=33.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
..||+|||+|.||+.||..+++..++.+|+|+|+....++
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~~~ 42 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPMRS 42 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 3689999999999999999998324689999999866544
|
The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model. |
| >PTZ00306 NADH-dependent fumarate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0018 Score=71.45 Aligned_cols=39 Identities=28% Similarity=0.218 Sum_probs=35.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCc
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGL 53 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~ 53 (388)
..||||||+|.||++||..+++ .|.+|+|+|+.+..||.
T Consensus 409 ~~DVvVVG~G~AGl~AAi~Aae--~Ga~VivlEK~~~~GG~ 447 (1167)
T PTZ00306 409 PARVIVVGGGLAGCSAAIEAAS--CGAQVILLEKEAKLGGN 447 (1167)
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEEccCCCCCc
Confidence 4799999999999999999999 89999999999877764
|
|
| >PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.0044 Score=66.75 Aligned_cols=36 Identities=14% Similarity=0.084 Sum_probs=29.9
Q ss_pred CCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 151 DCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 151 ~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
.+++|+|||+|+.|+.+|..|+ +.| .+||++.+.+.
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~La--------------------r~G-~~VtVfE~~~~ 340 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLA--------------------VEG-FPVTVFEAFHD 340 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHH--------------------HCC-CeEEEEeeCCC
Confidence 4799999999999999999887 244 46999998753
|
|
| >PRK09231 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=96.73 E-value=0.002 Score=66.09 Aligned_cols=40 Identities=20% Similarity=0.313 Sum_probs=33.1
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
..||+|||+|.|||.||..+++.-++.+|+|+|+.+..+|
T Consensus 4 ~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~~g 43 (582)
T PRK09231 4 QADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPMRS 43 (582)
T ss_pred eeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCCCC
Confidence 4699999999999999999997323589999999865443
|
|
| >PRK06753 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.029 Score=54.08 Aligned_cols=131 Identities=13% Similarity=0.165 Sum_probs=71.1
Q ss_pred eEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCccccc-----CCHHHHHHHhc------
Q psy4525 154 EATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVA-----FTIKEFREMTK------ 222 (388)
Q Consensus 154 ~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~-----~~~~el~~l~~------ 222 (388)
+|+|||||.+|+-+|..|+ +.|. +|++++|++..... ..+.-++.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~--------------------~~g~-~v~v~E~~~~~~~~g~gi~l~~~~~~~L~~~gl~~~ 60 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQ--------------------EQGH-EVKVFEKNESVKEVGAGIGIGDNVIKKLGNHDLAKG 60 (373)
T ss_pred EEEEECCCHHHHHHHHHHH--------------------hCCC-cEEEEecCCcccccccceeeChHHHHHHHhcChHHH
Confidence 6999999999999999876 3454 59999988754211 11221111111
Q ss_pred -----CCCceE-Eecccccccchhh-----hccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCc
Q psy4525 223 -----LPHVQT-VFRNEQLCGVHEA-----SATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGA 291 (388)
Q Consensus 223 -----~~~~~~-~~~~~~~~~~~~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~ 291 (388)
.+.... .+++... .+... .....-.+..+...|...+ ...++++++.++++..++ +.
T Consensus 61 ~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~i~R~~l~~~L~~~~----------~~~~i~~~~~v~~i~~~~-~~ 128 (373)
T PRK06753 61 IKNAGQILSTMNLLDDKGT-LLNKVKLKSNTLNVTLHRQTLIDIIKSYV----------KEDAIFTGKEVTKIENET-DK 128 (373)
T ss_pred HHhcCCcccceeEEcCCCC-EEeecccccCCccccccHHHHHHHHHHhC----------CCceEEECCEEEEEEecC-Cc
Confidence 011111 1111110 00000 0001112455555555433 234788999999997543 33
Q ss_pred eeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 292 ITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 292 v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+ .+.+ .+++++.+|+||.|-|.+...
T Consensus 129 v-~v~~--------~~g~~~~~~~vigadG~~S~v 154 (373)
T PRK06753 129 V-TIHF--------ADGESEAFDLCIGADGIHSKV 154 (373)
T ss_pred E-EEEE--------CCCCEEecCEEEECCCcchHH
Confidence 3 2332 345678999999999977543
|
|
| >COG4529 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0066 Score=59.01 Aligned_cols=61 Identities=16% Similarity=0.209 Sum_probs=38.3
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccc--cCCHHHHHHHhcCCCceEEe
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQV--AFTIKEFREMTKLPHVQTVF 230 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~--~~~~~el~~l~~~~~~~~~~ 230 (388)
.+|+|||+|++|+.+|..|++++. ....|+++.+++.+-. +|+..+-..+.+.|..++-.
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~------------------~~~~Isi~e~~~~~G~GiaYs~~~p~~~lNv~a~~mS~ 63 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPR------------------PSGLISIFEPRPNFGQGIAYSTEEPEHLLNVPAARMSA 63 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC------------------CCCceEEeccccccCCCccCCCCCchhhhccccccccc
Confidence 479999999999999999984321 1123888888776543 34444433344555444433
Q ss_pred c
Q psy4525 231 R 231 (388)
Q Consensus 231 ~ 231 (388)
.
T Consensus 64 ~ 64 (474)
T COG4529 64 F 64 (474)
T ss_pred c
Confidence 3
|
|
| >PRK08071 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0022 Score=64.66 Aligned_cols=37 Identities=27% Similarity=0.311 Sum_probs=32.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
..||+|||+|.||+.||..+++ +.+|+|+|+.+..+|
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~---g~~V~lveK~~~~~g 39 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH---EYNVIIITKKTKRNS 39 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc---CCCEEEEeccCCCCC
Confidence 4699999999999999999964 789999999876544
|
|
| >PRK08626 fumarate reductase flavoprotein subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0022 Score=66.54 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=32.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
..||+|||+|.||+.||..+++ .|.+|+|+++.+..
T Consensus 5 ~~DVlVIG~G~AGl~AAi~Aae--~G~~VivleK~~~~ 40 (657)
T PRK08626 5 YTDALVIGAGLAGLRVAIAAAQ--RGLDTIVLSLVPAK 40 (657)
T ss_pred eccEEEECccHHHHHHHHHHHH--cCCCEEEEeCCCCC
Confidence 4699999999999999999999 89999999987654
|
|
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0021 Score=65.62 Aligned_cols=37 Identities=27% Similarity=0.371 Sum_probs=32.1
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
..||+|||+|.||++||..+++..+|.+|+|+|+.+.
T Consensus 9 ~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred ecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 4799999999999999999997323789999999865
|
|
| >PRK06475 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.027 Score=54.99 Aligned_cols=64 Identities=14% Similarity=0.084 Sum_probs=40.8
Q ss_pred hhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 249 RKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+..+.+.|.+.+. ...++++++++.++.+..++ +.+ .+.+.+ .++++.+.+|+||-|-|.+...
T Consensus 106 r~~l~~~L~~~~~-------~~~~i~v~~~~~v~~~~~~~-~~v-~v~~~~-----~~~~~~~~adlvIgADG~~S~v 169 (400)
T PRK06475 106 RADLQSALLDACR-------NNPGIEIKLGAEMTSQRQTG-NSI-TATIIR-----TNSVETVSAAYLIACDGVWSML 169 (400)
T ss_pred HHHHHHHHHHHHH-------hcCCcEEEECCEEEEEecCC-Cce-EEEEEe-----CCCCcEEecCEEEECCCccHhH
Confidence 4556666655432 12478999999999997543 222 232211 2344579999999999988543
|
|
| >PRK07395 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0022 Score=65.23 Aligned_cols=38 Identities=29% Similarity=0.384 Sum_probs=32.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
...||+|||+|.||++||..+. .|.+|+|+|+.+..+|
T Consensus 8 ~e~DVlVVG~G~AGl~AAi~A~---~G~~V~lieK~~~~gg 45 (553)
T PRK07395 8 SQFDVLVVGSGAAGLYAALCLP---SHLRVGLITKDTLKTS 45 (553)
T ss_pred ccCCEEEECccHHHHHHHHHhh---cCCCEEEEEccCCCCC
Confidence 4579999999999999999984 4899999999876554
|
|
| >PLN02697 lycopene epsilon cyclase | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0077 Score=60.72 Aligned_cols=131 Identities=15% Similarity=0.185 Sum_probs=68.7
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccC--CHHHHHHHh------c-C
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAF--TIKEFREMT------K-L 223 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~--~~~el~~l~------~-~ 223 (388)
-.|+|||+|.+|+-+|..|+ +.|. +|.++.+..++...+ ...++.++. + -
T Consensus 109 ~DVvIVGaGPAGLalA~~La--------------------k~Gl-~V~LIe~~~p~~~n~GvW~~~l~~lgl~~~i~~~w 167 (529)
T PLN02697 109 LDLVVIGCGPAGLALAAESA--------------------KLGL-NVGLIGPDLPFTNNYGVWEDEFKDLGLEDCIEHVW 167 (529)
T ss_pred ccEEEECcCHHHHHHHHHHH--------------------hCCC-cEEEecCcccCCCccccchhHHHhcCcHHHHHhhc
Confidence 47999999999999998776 3444 689998765554332 122322211 0 0
Q ss_pred CCceEEeccccccc-chhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCcc
Q psy4525 224 PHVQTVFRNEQLCG-VHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQA 302 (388)
Q Consensus 224 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~ 302 (388)
+..... .+..... +......+. +..+.+.+..... +.|+++ +...++.+..++ +.+..+.
T Consensus 168 ~~~~v~-~~~~~~~~~~~~Yg~V~--R~~L~~~Ll~~a~--------~~GV~~-~~~~V~~I~~~~-~~~~vv~------ 228 (529)
T PLN02697 168 RDTIVY-LDDDKPIMIGRAYGRVS--RTLLHEELLRRCV--------ESGVSY-LSSKVDRITEAS-DGLRLVA------ 228 (529)
T ss_pred CCcEEE-ecCCceeeccCcccEEc--HHHHHHHHHHHHH--------hcCCEE-EeeEEEEEEEcC-CcEEEEE------
Confidence 111111 1111000 000000111 2334444443321 457777 566777776533 2222222
Q ss_pred ccCCceeEEecceEEEccccCCc
Q psy4525 303 LVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 303 ~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
..++.++.||.||.|+|..+.
T Consensus 229 --~~dG~~i~A~lVI~AdG~~S~ 249 (529)
T PLN02697 229 --CEDGRVIPCRLATVASGAASG 249 (529)
T ss_pred --EcCCcEEECCEEEECCCcChh
Confidence 234467999999999999763
|
|
| >COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.025 Score=54.95 Aligned_cols=61 Identities=15% Similarity=0.195 Sum_probs=42.4
Q ss_pred hhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 249 RKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
+..+...|.+... ...++++++++.++.+..++ +.+. +.+. . +|+++.||+||-|=|....
T Consensus 103 ~~~l~~~L~~~~~-------~~~~v~~~~~~~v~~~~~~~-~~v~-v~l~------~-dG~~~~a~llVgADG~~S~ 163 (387)
T COG0654 103 RSDLLNALLEAAR-------ALPNVTLRFGAEVEAVEQDG-DGVT-VTLS------F-DGETLDADLLVGADGANSA 163 (387)
T ss_pred hHHHHHHHHHHHh-------hCCCcEEEcCceEEEEEEcC-CceE-EEEc------C-CCcEEecCEEEECCCCchH
Confidence 5555566655543 13459999999999998754 4444 5542 2 5569999999999997754
|
|
| >KOG2960|consensus | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.00048 Score=59.29 Aligned_cols=43 Identities=37% Similarity=0.425 Sum_probs=37.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC-Ccee
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF-GLVR 55 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g-g~~~ 55 (388)
..||+|||+|.|||++|..+.++.++.+|.+||.+-.+| |.|.
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGaWL 119 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGAWL 119 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcccc
Confidence 469999999999999999999877999999999987775 4453
|
|
| >PRK08163 salicylate hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.028 Score=54.69 Aligned_cols=45 Identities=7% Similarity=-0.056 Sum_probs=32.4
Q ss_pred eEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 272 YFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 272 gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
++++++++.++++..++ +.+. +.+ .+++++.||.||.|.|.....
T Consensus 124 ~v~~~~~~~v~~i~~~~-~~v~-v~~--------~~g~~~~ad~vV~AdG~~S~~ 168 (396)
T PRK08163 124 LVEFRTSTHVVGIEQDG-DGVT-VFD--------QQGNRWTGDALIGCDGVKSVV 168 (396)
T ss_pred CcEEEeCCEEEEEecCC-CceE-EEE--------cCCCEEecCEEEECCCcChHH
Confidence 58999999999987543 3332 332 344579999999999987554
|
|
| >PRK11445 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.04 Score=52.75 Aligned_cols=49 Identities=12% Similarity=0.007 Sum_probs=33.0
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
+.++++++++.++.+..++++ + .+.+.. .++..++.||.||.|.|....
T Consensus 110 ~~gv~v~~~~~v~~i~~~~~~-~-~v~~~~-----~g~~~~i~a~~vV~AdG~~S~ 158 (351)
T PRK11445 110 PASVEVYHNSLCRKIWREDDG-Y-HVIFRA-----DGWEQHITARYLVGADGANSM 158 (351)
T ss_pred hcCCEEEcCCEEEEEEEcCCE-E-EEEEec-----CCcEEEEEeCEEEECCCCCcH
Confidence 457999999999988764433 2 233211 232347899999999998754
|
|
| >PRK09897 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.011 Score=59.70 Aligned_cols=43 Identities=12% Similarity=0.067 Sum_probs=29.2
Q ss_pred EEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCC
Q psy4525 273 FRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQS 324 (388)
Q Consensus 273 v~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p 324 (388)
+.++..+.++.+...+++ + .+.. .+++..+.+|.||+|+|..+
T Consensus 124 V~v~~~~~V~~I~~~~~g-~-~V~t-------~~gg~~i~aD~VVLAtGh~~ 166 (534)
T PRK09897 124 VAVYESCQVTDLQITNAG-V-MLAT-------NQDLPSETFDLAVIATGHVW 166 (534)
T ss_pred EEEEECCEEEEEEEeCCE-E-EEEE-------CCCCeEEEcCEEEECCCCCC
Confidence 777788888888764422 2 2221 23346799999999999753
|
|
| >PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.025 Score=54.76 Aligned_cols=42 Identities=10% Similarity=0.179 Sum_probs=29.2
Q ss_pred EEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 273 FRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 273 v~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
++++ +..++++..++ +.+ .+.+ .++.++.||.||.|.|....
T Consensus 127 v~~~-~~~v~~i~~~~-~~~-~v~~--------~~g~~~~a~~vI~adG~~S~ 168 (388)
T PRK07608 127 LTWF-PARAQGLEVDP-DAA-TLTL--------ADGQVLRADLVVGADGAHSW 168 (388)
T ss_pred cEEE-cceeEEEEecC-CeE-EEEE--------CCCCEEEeeEEEEeCCCCch
Confidence 8887 88888886543 222 2432 33457999999999998754
|
|
| >PRK12843 putative FAD-binding dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0028 Score=64.98 Aligned_cols=41 Identities=22% Similarity=0.209 Sum_probs=37.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~ 55 (388)
..+|+|||+|++|+.+|..+.+ .|.+|+|+|+.+.+||...
T Consensus 16 ~~dvvvvG~G~aG~~aa~~~~~--~g~~v~l~ek~~~~gg~~~ 56 (578)
T PRK12843 16 EFDVIVIGAGAAGMSAALFAAI--AGLKVLLVERTEYVGGTTA 56 (578)
T ss_pred CCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCCccc
Confidence 4799999999999999999999 8999999999988887663
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0043 Score=62.14 Aligned_cols=35 Identities=20% Similarity=0.211 Sum_probs=28.2
Q ss_pred CCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecC
Q psy4525 151 DCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRG 206 (388)
Q Consensus 151 ~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~ 206 (388)
.+++|+|||+|.+|+++|..|. +.|. +|+++.+++
T Consensus 15 ~~~~v~viG~G~~G~~~A~~L~--------------------~~G~-~V~~~d~~~ 49 (480)
T PRK01438 15 QGLRVVVAGLGVSGFAAADALL--------------------ELGA-RVTVVDDGD 49 (480)
T ss_pred CCCEEEEECCCHHHHHHHHHHH--------------------HCCC-EEEEEeCCc
Confidence 4789999999999999998775 3454 699987664
|
|
| >PRK09077 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.0031 Score=64.04 Aligned_cols=38 Identities=32% Similarity=0.460 Sum_probs=32.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
...||+|||+|.||++||..+++ . .+|+|+|+.+..+|
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~--~-~~VilveK~~~~~g 44 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAE--H-RRVAVLSKGPLSEG 44 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHH--C-CCEEEEeccCCCCC
Confidence 34799999999999999999988 5 89999999876554
|
|
| >PRK10015 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.0097 Score=58.70 Aligned_cols=46 Identities=11% Similarity=0.079 Sum_probs=33.5
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
+.|+++++++.++.+..+ ++.+..+.. + +.++.||.||.|.|....
T Consensus 120 ~~Gv~i~~~~~V~~i~~~-~~~v~~v~~--------~-~~~i~A~~VI~AdG~~s~ 165 (429)
T PRK10015 120 QAGAQFIPGVRVDALVRE-GNKVTGVQA--------G-DDILEANVVILADGVNSM 165 (429)
T ss_pred HcCCEEECCcEEEEEEEe-CCEEEEEEe--------C-CeEEECCEEEEccCcchh
Confidence 468999999999888754 355554431 2 247999999999998654
|
|
| >PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.025 Score=55.15 Aligned_cols=47 Identities=15% Similarity=0.189 Sum_probs=34.1
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.|+++++++.++.+..++ +.+ .+++ .+++.+.||.||.|.|..+..
T Consensus 123 ~~gv~v~~~~~v~~i~~~~-~~v-~v~~--------~~g~~~~ad~vI~AdG~~S~v 169 (403)
T PRK07333 123 ALGIDLREATSVTDFETRD-EGV-TVTL--------SDGSVLEARLLVAADGARSKL 169 (403)
T ss_pred hCCCEEEcCCEEEEEEEcC-CEE-EEEE--------CCCCEEEeCEEEEcCCCChHH
Confidence 4589999999999987543 222 2332 344579999999999988654
|
|
| >TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0023 Score=65.75 Aligned_cols=33 Identities=27% Similarity=0.455 Sum_probs=30.3
Q ss_pred EEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 16 vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
|+|||+|.|||+||..+++ .|.+|+|+|+.+.+
T Consensus 1 VlVVG~G~AGl~AAl~Aae--~G~~VilleK~~~~ 33 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAE--LGYHVKLFSYVDAP 33 (603)
T ss_pred CEEECccHHHHHHHHHHHH--cCCCEEEEEecCCC
Confidence 6899999999999999999 89999999998733
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes. |
| >COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.039 Score=48.28 Aligned_cols=137 Identities=13% Similarity=0.102 Sum_probs=76.6
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccC-----------CHHHHHHH
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAF-----------TIKEFREM 220 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~-----------~~~el~~l 220 (388)
...|+|+|+|++|+-+|.+|+ +.+. +|.++.|+-.+--.+ -.++..++
T Consensus 30 esDViIVGaGPsGLtAAyyLA--------------------k~g~-kV~i~E~~ls~GGG~w~GGmlf~~iVv~~~a~~i 88 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLA--------------------KAGL-KVAIFERKLSFGGGIWGGGMLFNKIVVREEADEI 88 (262)
T ss_pred hccEEEECcCcchHHHHHHHH--------------------hCCc-eEEEEEeecccCCcccccccccceeeecchHHHH
Confidence 467999999999999999998 3454 599999875432211 12233333
Q ss_pred hcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccC
Q psy4525 221 TKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQ 300 (388)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~ 300 (388)
.+.-++...-..+. .+..... .-...++... .+.|.++.....+..+...++.+|.++...=.
T Consensus 89 L~e~gI~ye~~e~g--~~v~ds~------e~~skl~~~a---------~~aGaki~n~~~veDvi~r~~~rVaGvVvNWt 151 (262)
T COG1635 89 LDEFGIRYEEEEDG--YYVADSA------EFASKLAARA---------LDAGAKIFNGVSVEDVIVRDDPRVAGVVVNWT 151 (262)
T ss_pred HHHhCCcceecCCc--eEEecHH------HHHHHHHHHH---------HhcCceeeecceEEEEEEecCCceEEEEEecc
Confidence 33222222211111 1111110 1111122221 15788998888988887655447888876511
Q ss_pred ccccC---CceeEEecceEEEccccCCcc
Q psy4525 301 QALVT---EDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 301 ~~~~~---~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
-.... =+--.++++.||-|||.....
T Consensus 152 ~V~~~~lhvDPl~i~a~~VvDaTGHda~v 180 (262)
T COG1635 152 PVQMAGLHVDPLTIRAKAVVDATGHDAEV 180 (262)
T ss_pred hhhhcccccCcceeeEEEEEeCCCCchHH
Confidence 00000 011367899999999987654
|
|
| >TIGR01813 flavo_cyto_c flavocytochrome c | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.013 Score=57.92 Aligned_cols=48 Identities=8% Similarity=0.161 Sum_probs=37.1
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIG 321 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G 321 (388)
+.|+++++++.++++..++++++.++.+.+. .+....+.+|.||+|+|
T Consensus 142 ~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~----~g~~~~~~a~~VVlAtG 189 (439)
T TIGR01813 142 KEGIDTRLNSKVEDLIQDDQGTVVGVVVKGK----GKGIYIKAAKAVVLATG 189 (439)
T ss_pred HcCCEEEeCCEeeEeEECCCCcEEEEEEEeC----CCeEEEEecceEEEecC
Confidence 5789999999999998765678888776431 22234689999999999
|
This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. |
| >TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.0029 Score=64.96 Aligned_cols=33 Identities=27% Similarity=0.349 Sum_probs=29.8
Q ss_pred cEEEECccHHHHHHHHHHH----hhCCCCcEEEEcCCCC
Q psy4525 15 NVCIVGSGPAGFYCAQQIL----KLLPQSTVDIYEKLPV 49 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~----~~~~g~~v~lie~~~~ 49 (388)
||+|||+|.|||.||..++ + .|.+|+|+|+...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e--~G~~VilieK~~~ 37 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDK--KGLKIVLVEKANL 37 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhh--CCCeEEEEEccCC
Confidence 6999999999999999998 5 6899999998753
|
During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins. |
| >TIGR01790 carotene-cycl lycopene cyclase family protein | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.018 Score=55.95 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=26.5
Q ss_pred eEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 154 EATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 154 ~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
+|+|||+|.+|+-+|..|+ +.+ .+|+++.+.+.
T Consensus 1 DviIiGaG~AGl~~A~~la--------------------~~g-~~v~liE~~~~ 33 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELA--------------------RPG-LRVQLIEPHPP 33 (388)
T ss_pred CEEEECCCHHHHHHHHHHH--------------------hCC-CeEEEEccCCC
Confidence 4899999999999999776 234 46999997754
|
This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene. |
| >KOG2311|consensus | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.01 Score=57.33 Aligned_cols=35 Identities=17% Similarity=0.209 Sum_probs=30.9
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
...++|||||||.||+.||.+.++ .|.+.+++..+
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR--~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAAR--LGARTLLLTHN 60 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHh--cCCceEEeecc
Confidence 356899999999999999999999 89998888654
|
|
| >PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0034 Score=64.40 Aligned_cols=36 Identities=28% Similarity=0.306 Sum_probs=31.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
..||+|||+|.||++||..+++ . .+|+|+|+.+..+
T Consensus 5 ~~DVlVIG~G~AGl~AAl~aa~--~-~~VilleK~~~~~ 40 (583)
T PRK08205 5 RYDVVIVGAGGAGMRAAIEAGP--R-ARTAVLTKLYPTR 40 (583)
T ss_pred eccEEEECccHHHHHHHHHHHh--C-CCEEEEeCCCCCC
Confidence 4699999999999999999987 5 8999999975433
|
|
| >KOG3923|consensus | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.011 Score=53.87 Aligned_cols=37 Identities=27% Similarity=0.504 Sum_probs=30.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhh-----CCCCcEEEEcCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKL-----LPQSTVDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~-----~~g~~v~lie~~~ 48 (388)
.+.+|+|||+|..|++.|..+.+. .+..+|+++....
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf 43 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRF 43 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCC
Confidence 357999999999999999888873 2567899987543
|
|
| >PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.011 Score=58.71 Aligned_cols=35 Identities=17% Similarity=0.274 Sum_probs=31.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~~ 48 (388)
..++|+|||+|..|+.+|..+.+ .|. +|+++++.+
T Consensus 272 ~g~~VvViGgG~~g~e~A~~l~~--~G~~~Vtlv~~~~ 307 (457)
T PRK11749 272 VGKRVVVIGGGNTAMDAARTAKR--LGAESVTIVYRRG 307 (457)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--cCCCeEEEeeecC
Confidence 46899999999999999999998 787 899999764
|
|
| >PRK06185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.037 Score=54.02 Aligned_cols=48 Identities=23% Similarity=0.227 Sum_probs=35.4
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCce-eEEecceEEEccccCCc
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDT-ELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~-~~l~~D~Vi~a~G~~p~ 325 (388)
.++++++++.++++..+ ++.+.++.+. ..++ .++.||.||.|.|....
T Consensus 122 ~~v~i~~~~~v~~~~~~-~~~v~~v~~~------~~~g~~~i~a~~vI~AdG~~S~ 170 (407)
T PRK06185 122 PNFTLRMGAEVTGLIEE-GGRVTGVRAR------TPDGPGEIRADLVVGADGRHSR 170 (407)
T ss_pred CCcEEEeCCEEEEEEEe-CCEEEEEEEE------cCCCcEEEEeCEEEECCCCchH
Confidence 57999999999998764 3566555542 2233 47999999999998753
|
|
| >PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.026 Score=57.41 Aligned_cols=43 Identities=12% Similarity=0.139 Sum_probs=30.4
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccC
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
.++.+. ...++++..+ ++++.++.. .++..+.|+.||.|||.-
T Consensus 114 ~nV~I~-q~~V~~Li~e-~grV~GV~t--------~dG~~I~Ak~VIlATGTF 156 (618)
T PRK05192 114 PNLDLF-QGEVEDLIVE-NGRVVGVVT--------QDGLEFRAKAVVLTTGTF 156 (618)
T ss_pred CCcEEE-EeEEEEEEec-CCEEEEEEE--------CCCCEEECCEEEEeeCcc
Confidence 467764 5567777653 467777764 345689999999999954
|
|
| >PRK09126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.025 Score=54.96 Aligned_cols=47 Identities=6% Similarity=0.023 Sum_probs=34.6
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
..|+++++++.++.+..++ +.+ .+.+ .+++++.||.||.|.|..+..
T Consensus 123 ~~g~~i~~~~~v~~~~~~~-~~~-~v~~--------~~g~~~~a~~vI~AdG~~S~v 169 (392)
T PRK09126 123 QDGIELLTGTRVTAVRTDD-DGA-QVTL--------ANGRRLTARLLVAADSRFSAT 169 (392)
T ss_pred CCCcEEEcCCeEEEEEEcC-CeE-EEEE--------cCCCEEEeCEEEEeCCCCchh
Confidence 4689999999999987643 222 3433 234579999999999988664
|
|
| >TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.022 Score=55.07 Aligned_cols=43 Identities=9% Similarity=0.176 Sum_probs=31.4
Q ss_pred EEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 273 FRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 273 v~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
+++++++.++++..++ +.+ .+.+ .+++.+.+|.||.|.|....
T Consensus 122 ~~v~~~~~v~~i~~~~-~~~-~v~~--------~~g~~~~~~~vi~adG~~S~ 164 (385)
T TIGR01988 122 VTLLCPARVVELPRHS-DHV-ELTL--------DDGQQLRARLLVGADGANSK 164 (385)
T ss_pred cEEecCCeEEEEEecC-Cee-EEEE--------CCCCEEEeeEEEEeCCCCCH
Confidence 8999999999987543 333 2333 34457999999999998754
|
This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki |
| >PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.045 Score=53.12 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=32.8
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
.++++++++.++.+..++++ ..+.+ .+++++.+|+||.|.|.....
T Consensus 126 ~gv~i~~~~~v~~i~~~~~~--~~v~~--------~~g~~~~a~~vI~AdG~~S~v 171 (391)
T PRK08020 126 PNVTLRCPASLQALQRDDDG--WELTL--------ADGEEIQAKLVIGADGANSQV 171 (391)
T ss_pred CCcEEEcCCeeEEEEEcCCe--EEEEE--------CCCCEEEeCEEEEeCCCCchh
Confidence 48999999999988754322 22332 334579999999999988754
|
|
| >COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0046 Score=57.01 Aligned_cols=34 Identities=24% Similarity=0.435 Sum_probs=31.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
.++|+|||||.||++|+..+.+ .|.++.++.+..
T Consensus 2 ~fDv~IIGGGLAGltc~l~l~~--~Gk~c~iv~~gQ 35 (421)
T COG3075 2 NFDVAIIGGGLAGLTCGLALQQ--AGKRCAIVNRGQ 35 (421)
T ss_pred cccEEEEcCcHHHHHHHHHHHh--cCCcEEEEeCCh
Confidence 4799999999999999999999 999999998753
|
|
| >TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.047 Score=52.80 Aligned_cols=45 Identities=9% Similarity=0.130 Sum_probs=32.6
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
.|++++++..++++..++++ + .+.+ .+++++.||.||.|.|....
T Consensus 119 ~gv~~~~~~~v~~i~~~~~~-~-~v~~--------~~g~~~~ad~vV~AdG~~S~ 163 (382)
T TIGR01984 119 TNIQLYCPARYKEIIRNQDY-V-RVTL--------DNGQQLRAKLLIAADGANSK 163 (382)
T ss_pred CCcEEEcCCeEEEEEEcCCe-E-EEEE--------CCCCEEEeeEEEEecCCChH
Confidence 48999999999999764432 2 2332 23457999999999998753
|
This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype. |
| >PRK08132 FAD-dependent oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.071 Score=54.37 Aligned_cols=49 Identities=10% Similarity=0.146 Sum_probs=33.8
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
.++++++++.++++..++++ + .+.+.+ .++.+++.||.||.|.|.+...
T Consensus 139 ~~v~v~~~~~v~~i~~~~~~-v-~v~~~~-----~~g~~~i~ad~vVgADG~~S~v 187 (547)
T PRK08132 139 PNIDLRWKNKVTGLEQHDDG-V-TLTVET-----PDGPYTLEADWVIACDGARSPL 187 (547)
T ss_pred CCcEEEeCCEEEEEEEcCCE-E-EEEEEC-----CCCcEEEEeCEEEECCCCCcHH
Confidence 46999999999999865433 2 222221 1223479999999999988754
|
|
| >PRK08244 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.023 Score=57.17 Aligned_cols=50 Identities=10% Similarity=0.032 Sum_probs=34.3
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.|+++++++.++++..++++ + .+.+.+ .+..+++.+|.||.|.|.+...
T Consensus 112 ~~gv~v~~~~~v~~i~~~~~~-v-~v~~~~-----~~g~~~i~a~~vVgADG~~S~v 161 (493)
T PRK08244 112 SLGVEIFRGAEVLAVRQDGDG-V-EVVVRG-----PDGLRTLTSSYVVGADGAGSIV 161 (493)
T ss_pred HcCCeEEeCCEEEEEEEcCCe-E-EEEEEe-----CCccEEEEeCEEEECCCCChHH
Confidence 458999999999998765433 2 233321 1112579999999999998754
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.012 Score=58.46 Aligned_cols=77 Identities=14% Similarity=0.122 Sum_probs=51.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++++|+|+|.+|+.+|..|.+ .|++|+++|+.... .+ ....+.+...+++++.+....
T Consensus 4 ~~k~v~iiG~g~~G~~~A~~l~~--~G~~V~~~d~~~~~----------------~~-~~~~~~l~~~~~~~~~~~~~~- 63 (450)
T PRK14106 4 KGKKVLVVGAGVSGLALAKFLKK--LGAKVILTDEKEED----------------QL-KEALEELGELGIELVLGEYPE- 63 (450)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCchH----------------HH-HHHHHHHHhcCCEEEeCCcch-
Confidence 35789999999999999999999 99999999976310 11 111222344566554333221
Q ss_pred EeeecccccccCEEEEeeCCCC
Q psy4525 92 DISLGDLTNAYHAVVLTYGADN 113 (388)
Q Consensus 92 ~~~~~~~~~~yd~lvlAtG~~~ 113 (388)
.....+|.||+++|..+
T Consensus 64 -----~~~~~~d~vv~~~g~~~ 80 (450)
T PRK14106 64 -----EFLEGVDLVVVSPGVPL 80 (450)
T ss_pred -----hHhhcCCEEEECCCCCC
Confidence 12236899999999654
|
|
| >PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.033 Score=54.03 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=34.6
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
.+++++++..++++..++++ + .+.+ .++.++.||+||.|.|.+...
T Consensus 124 ~~i~i~~~~~v~~~~~~~~~-~-~v~~--------~~g~~~~~~lvIgADG~~S~v 169 (384)
T PRK08849 124 PNLTLMCPEKLADLEFSAEG-N-RVTL--------ESGAEIEAKWVIGADGANSQV 169 (384)
T ss_pred CCeEEECCCceeEEEEcCCe-E-EEEE--------CCCCEEEeeEEEEecCCCchh
Confidence 57999999999999865433 2 3443 344689999999999998764
|
|
| >KOG1399|consensus | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.025 Score=55.68 Aligned_cols=127 Identities=13% Similarity=0.119 Sum_probs=70.6
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcc----ccc----------------
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGAL----QVA---------------- 211 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~----~~~---------------- 211 (388)
.++|+|||+|.+|+-.|..|. +.| .+|+++.|++.+ ...
T Consensus 6 ~~~vaIIGAG~sGL~~ar~l~--------------------~~g-~~v~vfEr~~~iGGlW~y~~~~~~~~ss~Y~~l~t 64 (448)
T KOG1399|consen 6 SKDVAVIGAGPAGLAAARELL--------------------REG-HEVVVFERTDDIGGLWKYTENVEVVHSSVYKSLRT 64 (448)
T ss_pred CCceEEECcchHHHHHHHHHH--------------------HCC-CCceEEEecCCccceEeecCcccccccchhhhhhc
Confidence 589999999999999999776 233 468888887643 221
Q ss_pred CCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCc
Q psy4525 212 FTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGA 291 (388)
Q Consensus 212 ~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~ 291 (388)
-+++|+..+.+.|+... .+... -....++++|..++... .....+.++..+.++....+|.
T Consensus 65 n~pKe~~~~~dfpf~~~------------~~~~~-p~~~e~~~YL~~yA~~F------~l~~~i~f~~~v~~v~~~~~gk 125 (448)
T KOG1399|consen 65 NLPKEMMGYSDFPFPER------------DPRYF-PSHREVLEYLRDYAKHF------DLLKMINFNTEVVRVDSIDKGK 125 (448)
T ss_pred cCChhhhcCCCCCCccc------------CcccC-CCHHHHHHHHHHHHHhc------ChhhheEecccEEEEeeccCCc
Confidence 01122222222221110 00000 01346677777766422 2234567777777776543233
Q ss_pred eeEEEEccCccccCCceeEEecceEEEccccC
Q psy4525 292 ITGINFANQQALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 292 v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
...... +. .+..++.-+|.|++|+|-.
T Consensus 126 W~V~~~-~~----~~~~~~~ifd~VvVctGh~ 152 (448)
T KOG1399|consen 126 WRVTTK-DN----GTQIEEEIFDAVVVCTGHY 152 (448)
T ss_pred eeEEEe-cC----CcceeEEEeeEEEEcccCc
Confidence 322211 11 1114678899999999987
|
|
| >COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0051 Score=62.34 Aligned_cols=38 Identities=24% Similarity=0.333 Sum_probs=34.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
...||+|||+|.|||.||..+++ .|.+|+|+|+.+..+
T Consensus 5 ~~~DvvVIG~G~AGl~AAi~aa~--~g~~V~l~~K~~~~r 42 (562)
T COG1053 5 HEFDVVVIGGGGAGLRAAIEAAE--AGLKVALLSKAPPKR 42 (562)
T ss_pred ccCCEEEECCcHHHHHHHHHHHh--cCCcEEEEEccccCC
Confidence 45799999999999999999999 899999999876543
|
|
| >PLN02852 ferredoxin-NADP+ reductase | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.012 Score=58.77 Aligned_cols=38 Identities=18% Similarity=0.255 Sum_probs=29.8
Q ss_pred CCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 151 DCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 151 ~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
.+++|+|||+|+.|+.+|..|++ +....+|+++.+.+.
T Consensus 25 ~~~~VaIVGaGPAGl~AA~~L~~-------------------~~~g~~Vtv~E~~p~ 62 (491)
T PLN02852 25 EPLHVCVVGSGPAGFYTADKLLK-------------------AHDGARVDIIERLPT 62 (491)
T ss_pred CCCcEEEECccHHHHHHHHHHHh-------------------hCCCCeEEEEecCCC
Confidence 46899999999999999998861 012347999998864
|
|
| >TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.026 Score=57.63 Aligned_cols=86 Identities=19% Similarity=0.111 Sum_probs=56.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++|+|||||+.|+.+|..|.+ .+.+|+++++.+.+. . ...+.. ......+++++.++.+..
T Consensus 142 ~g~~VvVIGgG~~g~E~A~~L~~--~g~~Vtli~~~~~~~--------~----~~~~~~---~~~~~~gV~i~~~~~V~~ 204 (555)
T TIGR03143 142 TGMDVFVIGGGFAAAEEAVFLTR--YASKVTVIVREPDFT--------C----AKLIAE---KVKNHPKIEVKFNTELKE 204 (555)
T ss_pred CCCEEEEECCCHHHHHHHHHHHc--cCCEEEEEEeCCccc--------c----CHHHHH---HHHhCCCcEEEeCCEEEE
Confidence 46899999999999999999998 899999999875431 1 111222 223446898887766532
Q ss_pred E--------ee---ecccc-c----ccCE----EEEeeCCCCC
Q psy4525 92 D--------IS---LGDLT-N----AYHA----VVLTYGADND 114 (388)
Q Consensus 92 ~--------~~---~~~~~-~----~yd~----lvlAtG~~~~ 114 (388)
. +. ..+++ . .+|. |++|+|..|.
T Consensus 205 i~~~~~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~~Pn 247 (555)
T TIGR03143 205 ATGDDGLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGYAPS 247 (555)
T ss_pred EEcCCcEEEEEEEECCCCCEEEEeccccccceEEEEEeCCCCC
Confidence 1 11 11121 1 2455 9999998774
|
This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140). |
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0095 Score=59.44 Aligned_cols=36 Identities=19% Similarity=0.375 Sum_probs=29.1
Q ss_pred CCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 151 DCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 151 ~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
.+++|+|||+|.+|+.+|..|+ +.+. +|+++.+.+.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~--------------------~~G~-~V~i~e~~~~ 175 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILA--------------------RAGV-QVVVFDRHPE 175 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHH--------------------HcCC-eEEEEecCCC
Confidence 4789999999999999999776 2343 6999987754
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.043 Score=55.86 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=35.7
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
.++++++++.++++..++++ + .+.+.+. .++.+++.||.||-|.|.+...
T Consensus 127 ~gv~v~~g~~v~~i~~~~~~-v-~v~~~~~----~G~~~~i~ad~vVgADG~~S~v 176 (538)
T PRK06183 127 PHVRVRFGHEVTALTQDDDG-V-TVTLTDA----DGQRETVRARYVVGCDGANSFV 176 (538)
T ss_pred CCcEEEcCCEEEEEEEcCCe-E-EEEEEcC----CCCEEEEEEEEEEecCCCchhH
Confidence 48999999999999875533 2 2333211 2334689999999999988654
|
|
| >PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.016 Score=61.41 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=31.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCc-EEEEcCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQST-VDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~-v~lie~~~ 48 (388)
..++|+|||||..|+.+|..+.+ .|.+ |+++++.+
T Consensus 569 ~gk~VvVIGgG~~a~d~A~~~~r--~Ga~~Vtlv~r~~ 604 (752)
T PRK12778 569 FGKKVAVVGGGNTAMDSARTAKR--LGAERVTIVYRRS 604 (752)
T ss_pred CCCcEEEECCcHHHHHHHHHHHH--cCCCeEEEeeecC
Confidence 45899999999999999999999 7887 99999764
|
|
| >PRK07538 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.051 Score=53.26 Aligned_cols=48 Identities=8% Similarity=0.023 Sum_probs=32.8
Q ss_pred EEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 273 FRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 273 v~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
..+++++.++++..++++.+..+ .++ ..++++++.||+||-|-|.+..
T Consensus 119 ~~i~~~~~v~~~~~~~~~~~~~~--~~~---~~g~~~~~~adlvIgADG~~S~ 166 (413)
T PRK07538 119 DAVRTGHRVVGFEQDADVTVVFL--GDR---AGGDLVSVRGDVLIGADGIHSA 166 (413)
T ss_pred cEEEcCCEEEEEEecCCceEEEE--ecc---CCCccceEEeeEEEECCCCCHH
Confidence 46899999999876554433222 221 1344568999999999998653
|
|
| >PTZ00188 adrenodoxin reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.015 Score=57.60 Aligned_cols=38 Identities=21% Similarity=0.266 Sum_probs=29.9
Q ss_pred CCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcc
Q psy4525 151 DCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGAL 208 (388)
Q Consensus 151 ~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~ 208 (388)
.+++|+|||+|++|+.+|..|+ .+.+ .+|+++.|.+.+
T Consensus 38 ~~krVAIVGaGPAGlyaA~~Ll-------------------~~~g-~~VtlfEk~p~p 75 (506)
T PTZ00188 38 KPFKVGIIGAGPSALYCCKHLL-------------------KHER-VKVDIFEKLPNP 75 (506)
T ss_pred CCCEEEEECCcHHHHHHHHHHH-------------------HhcC-CeEEEEecCCCC
Confidence 4689999999999999999764 1123 469999988653
|
|
| >TIGR00136 gidA glucose-inhibited division protein A | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.036 Score=56.39 Aligned_cols=46 Identities=17% Similarity=0.142 Sum_probs=31.9
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
.++.++.. .++.+..++++.+.++.. .++..+.||.||+|||.-.+
T Consensus 110 pgV~Ile~-~Vv~li~e~~g~V~GV~t--------~~G~~I~Ad~VILATGtfL~ 155 (617)
T TIGR00136 110 PNLSLFQG-EVEDLILEDNDEIKGVVT--------QDGLKFRAKAVIITTGTFLR 155 (617)
T ss_pred CCcEEEEe-EEEEEEEecCCcEEEEEE--------CCCCEEECCEEEEccCcccC
Confidence 47777654 566665433467777765 33457999999999998754
|
GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137). |
| >TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.014 Score=58.61 Aligned_cols=36 Identities=17% Similarity=0.321 Sum_probs=29.3
Q ss_pred CCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 151 DCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 151 ~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
.+++|+|||+|.+|+.+|..|+ +.+ .+|+++.+.+.
T Consensus 142 ~~~~V~IIGaG~aGl~aA~~L~--------------------~~g-~~V~v~e~~~~ 177 (485)
T TIGR01317 142 TGKKVAVVGSGPAGLAAADQLN--------------------RAG-HTVTVFEREDR 177 (485)
T ss_pred CCCEEEEECCcHHHHHHHHHHH--------------------HcC-CeEEEEecCCC
Confidence 4689999999999999999886 234 36999988754
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate. |
| >PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.072 Score=52.01 Aligned_cols=47 Identities=6% Similarity=0.046 Sum_probs=33.9
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.++++++++.++++..++++ + .+.+ .+++++.||.||.|.|.....
T Consensus 124 ~~gv~v~~~~~v~~i~~~~~~-v-~v~~--------~~g~~~~a~~vVgAdG~~S~v 170 (405)
T PRK05714 124 DSDIGLLANARLEQMRRSGDD-W-LLTL--------ADGRQLRAPLVVAADGANSAV 170 (405)
T ss_pred cCCCEEEcCCEEEEEEEcCCe-E-EEEE--------CCCCEEEeCEEEEecCCCchh
Confidence 458999999999998765432 2 2332 344579999999999987644
|
|
| >PRK02106 choline dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.0061 Score=62.32 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=32.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
.+|+||||+|+||+.+|..|.+. ++.+|+|+|+.+.
T Consensus 5 ~~D~iIVG~G~aG~vvA~rLae~-~g~~VlvlEaG~~ 40 (560)
T PRK02106 5 EYDYIIIGAGSAGCVLANRLSED-PDVSVLLLEAGGP 40 (560)
T ss_pred cCcEEEECCcHHHHHHHHHHHhC-CCCeEEEecCCCc
Confidence 47999999999999999999984 6999999999853
|
|
| >PRK06126 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.073 Score=54.26 Aligned_cols=51 Identities=12% Similarity=0.083 Sum_probs=35.7
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
.++++++++.++++..+++ .+. +.+.+. .+++..++.+|.||.|.|.+...
T Consensus 140 ~~v~i~~~~~v~~i~~~~~-~v~-v~~~~~---~~g~~~~i~ad~vVgADG~~S~V 190 (545)
T PRK06126 140 PGVTLRYGHRLTDFEQDAD-GVT-ATVEDL---DGGESLTIRADYLVGCDGARSAV 190 (545)
T ss_pred CCceEEeccEEEEEEECCC-eEE-EEEEEC---CCCcEEEEEEEEEEecCCcchHH
Confidence 5799999999999987543 333 333221 13444689999999999987643
|
|
| >PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.023 Score=53.99 Aligned_cols=47 Identities=21% Similarity=0.168 Sum_probs=34.2
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.|+.+++++.++++..+ ++.+.+++ +.+++ +.+|.||+|+|...+.
T Consensus 159 ~~Gv~i~~~~~V~~i~~~-~~~v~gv~--------~~~g~-i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 159 RAGVEIRTGTEVTSIDVD-GGRVTGVR--------TSDGE-IRADRVVLAAGAWSPQ 205 (358)
T ss_dssp HTT-EEEESEEEEEEEEE-TTEEEEEE--------ETTEE-EEECEEEE--GGGHHH
T ss_pred Hhhhhccccccccchhhc-cccccccc--------ccccc-cccceeEeccccccee
Confidence 568999999999999875 35666675 45555 9999999999987655
|
1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A .... |
| >KOG1298|consensus | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.006 Score=57.42 Aligned_cols=35 Identities=31% Similarity=0.304 Sum_probs=32.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
...||+|||||.+|.++|..|.+ .|-+|+++||.-
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~k--dGRrVhVIERDl 78 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAK--DGRRVHVIERDL 78 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhh--CCcEEEEEeccc
Confidence 45799999999999999999999 999999999863
|
|
| >PRK08013 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.073 Score=51.97 Aligned_cols=46 Identities=9% Similarity=0.087 Sum_probs=33.3
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
.+++++++..++.+..++++ + .+.+ .+++++.+|+||-|-|.+...
T Consensus 125 ~~v~i~~~~~v~~i~~~~~~-v-~v~~--------~~g~~i~a~lvVgADG~~S~v 170 (400)
T PRK08013 125 SDITLLAPAELQQVAWGENE-A-FLTL--------KDGSMLTARLVVGADGANSWL 170 (400)
T ss_pred CCcEEEcCCeeEEEEecCCe-E-EEEE--------cCCCEEEeeEEEEeCCCCcHH
Confidence 47999999999998754432 2 2333 234679999999999987554
|
|
| >COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0088 Score=59.55 Aligned_cols=41 Identities=22% Similarity=0.197 Sum_probs=36.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCc
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGL 53 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~ 53 (388)
....||+|||||..|+.+|..++. .|++|+|+|+.+...|.
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~--RGl~v~LvE~~D~AsGT 50 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAG--RGLKVALVEKGDLASGT 50 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHh--CCCeEEEEecCcccCcc
Confidence 367899999999999999999999 89999999998765543
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.013 Score=58.44 Aligned_cols=79 Identities=14% Similarity=0.126 Sum_probs=51.2
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEEEee
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQDIS 94 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~~~ 94 (388)
+|+|||.|++|+++|..|.+ .|++|+++|+.... . .......+...|+.+..+...... .
T Consensus 2 ~v~viG~G~sG~s~a~~l~~--~G~~V~~~D~~~~~----------~-------~~~~~~~l~~~gi~~~~g~~~~~~-~ 61 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKA--QGWEVVVSDRNDSP----------E-------LLERQQELEQEGITVKLGKPLELE-S 61 (459)
T ss_pred eEEEEccCHHHHHHHHHHHH--CCCEEEEECCCCch----------h-------hHHHHHHHHHcCCEEEECCccchh-h
Confidence 58999999999999999999 89999999987442 1 111122334457776654322100 0
Q ss_pred ecccccccCEEEEeeCCCC
Q psy4525 95 LGDLTNAYHAVVLTYGADN 113 (388)
Q Consensus 95 ~~~~~~~yd~lvlAtG~~~ 113 (388)
.......+|.||++.|..+
T Consensus 62 ~~~~~~~~d~vv~s~gi~~ 80 (459)
T PRK02705 62 FQPWLDQPDLVVVSPGIPW 80 (459)
T ss_pred hhHHhhcCCEEEECCCCCC
Confidence 0011235899999888654
|
|
| >PRK07190 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.068 Score=53.62 Aligned_cols=47 Identities=19% Similarity=0.075 Sum_probs=34.0
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.|+++++++.++.+..++++ +. +.+ .+++++.|+.||.|.|.+...
T Consensus 121 ~~Gv~v~~~~~v~~l~~~~~~-v~-v~~--------~~g~~v~a~~vVgADG~~S~v 167 (487)
T PRK07190 121 EAGAAVKRNTSVVNIELNQAG-CL-TTL--------SNGERIQSRYVIGADGSRSFV 167 (487)
T ss_pred HCCCEEEeCCEEEEEEEcCCe-eE-EEE--------CCCcEEEeCEEEECCCCCHHH
Confidence 468999999999999865433 22 221 234589999999999987643
|
|
| >PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.004 Score=61.39 Aligned_cols=49 Identities=12% Similarity=0.148 Sum_probs=0.0
Q ss_pred CCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEcccc
Q psy4525 268 NCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 268 ~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
+.+.|+++++++.++.+..+ ++++.+|.+.+. . ...++.||.+|=|||.
T Consensus 100 l~e~gv~v~~~t~v~~v~~~-~~~i~~V~~~~~----~-g~~~i~A~~~IDaTG~ 148 (428)
T PF12831_consen 100 LAEAGVEVLLGTRVVDVIRD-GGRITGVIVETK----S-GRKEIRAKVFIDATGD 148 (428)
T ss_dssp -------------------------------------------------------
T ss_pred cccccccccccccccccccc-cccccccccccc----c-cccccccccccccccc
Confidence 34689999999999999875 478888887542 1 2578999999999994
|
|
| >PRK00711 D-amino acid dehydrogenase small subunit; Validated | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.042 Score=53.85 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=32.1
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
+.|+++++++.++++..++ +.+..++ +.+ .++.||.||+|+|....
T Consensus 213 ~~G~~i~~~~~V~~i~~~~-~~~~~v~--------t~~-~~~~a~~VV~a~G~~~~ 258 (416)
T PRK00711 213 QLGVKFRFNTPVDGLLVEG-GRITGVQ--------TGG-GVITADAYVVALGSYST 258 (416)
T ss_pred HCCCEEEcCCEEEEEEecC-CEEEEEE--------eCC-cEEeCCEEEECCCcchH
Confidence 5688998888888887543 4444443 222 36899999999997543
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.0067 Score=65.43 Aligned_cols=36 Identities=31% Similarity=0.391 Sum_probs=32.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
...||+|||+|.||+.||..+++ .|.+|+|+|+.+.
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~--~G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAE--HGANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHH--CCCeEEEEecccc
Confidence 35799999999999999999999 8999999998764
|
|
| >KOG1346|consensus | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.019 Score=54.57 Aligned_cols=94 Identities=16% Similarity=0.131 Sum_probs=66.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhC--CCCcEE-EEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLL--PQSTVD-IYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNI 87 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~--~g~~v~-lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~ 87 (388)
...+.|-|||+|+-|-.+|..|.++. .|.+|. +|+..... ....++.+..|-.+.+++.|+.++.+.
T Consensus 345 aek~siTIiGnGflgSELacsl~rk~r~~g~eV~QvF~Ek~nm----------~kiLPeyls~wt~ekir~~GV~V~pna 414 (659)
T KOG1346|consen 345 AEKQSITIIGNGFLGSELACSLKRKYRNEGVEVHQVFEEKYNM----------EKILPEYLSQWTIEKIRKGGVDVRPNA 414 (659)
T ss_pred hhcceEEEEcCcchhhhHHHHHHHhhhccCcEEEEeecccCCh----------hhhhHHHHHHHHHHHHHhcCceeccch
Confidence 44578999999999999999888863 456664 55543111 112344466677777888899998887
Q ss_pred EEEE--------Eeeeccccc-ccCEEEEeeCCCCC
Q psy4525 88 CLGQ--------DISLGDLTN-AYHAVVLTYGADND 114 (388)
Q Consensus 88 ~v~~--------~~~~~~~~~-~yd~lvlAtG~~~~ 114 (388)
.|.. .+.+.++.. .-|.||+|+|..|+
T Consensus 415 ~v~sv~~~~~nl~lkL~dG~~l~tD~vVvavG~ePN 450 (659)
T KOG1346|consen 415 KVESVRKCCKNLVLKLSDGSELRTDLVVVAVGEEPN 450 (659)
T ss_pred hhhhhhhhccceEEEecCCCeeeeeeEEEEecCCCc
Confidence 7631 245566544 88999999998874
|
|
| >TIGR03219 salicylate_mono salicylate 1-monooxygenase | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.056 Score=53.00 Aligned_cols=43 Identities=14% Similarity=0.132 Sum_probs=29.6
Q ss_pred EEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 273 FRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 273 v~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
..+++++.++++..++++ + .+.+ .++.++.+|.||.|.|....
T Consensus 118 ~~v~~~~~v~~i~~~~~~-~-~v~~--------~~g~~~~ad~vVgADG~~S~ 160 (414)
T TIGR03219 118 GIASFGKRATQIEEQAEE-V-QVLF--------TDGTEYRCDLLIGADGIKSA 160 (414)
T ss_pred ceEEcCCEEEEEEecCCc-E-EEEE--------cCCCEEEeeEEEECCCccHH
Confidence 456788999988764432 2 3433 33457999999999997753
|
Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway. |
| >COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.049 Score=52.63 Aligned_cols=37 Identities=27% Similarity=0.431 Sum_probs=30.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhC---CCCcEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLL---PQSTVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~---~g~~v~lie~~ 47 (388)
....+++|||+||+|+.+|..+.... +.+.+.++|..
T Consensus 16 ~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g 55 (486)
T COG2509 16 NAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVG 55 (486)
T ss_pred hhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEec
Confidence 34589999999999999999998642 36788888854
|
|
| >PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.039 Score=53.69 Aligned_cols=51 Identities=8% Similarity=0.010 Sum_probs=34.6
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
..|+++++++.++++...+ +....+.+.. .++..++.||+||-|-|.+...
T Consensus 115 ~~gv~v~~~~~v~~i~~~~-~~~~~V~~~~-----~G~~~~i~ad~vVgADG~~S~v 165 (392)
T PRK08243 115 AAGGPIRFEASDVALHDFD-SDRPYVTYEK-----DGEEHRLDCDFIAGCDGFHGVS 165 (392)
T ss_pred hCCCeEEEeeeEEEEEecC-CCceEEEEEc-----CCeEEEEEeCEEEECCCCCCch
Confidence 4578999999998887422 2223344421 2334579999999999988654
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.021 Score=59.32 Aligned_cols=36 Identities=22% Similarity=0.466 Sum_probs=29.8
Q ss_pred CCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 151 DCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 151 ~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
.+++|+|||+|.+|+..|..|+ +.|. +|+++.+.+.
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~--------------------~~G~-~Vtv~e~~~~ 344 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILA--------------------RAGV-QVDVFDRHPE 344 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHH--------------------HcCC-cEEEEeCCCC
Confidence 4799999999999999999876 2444 6999988764
|
|
| >TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.022 Score=61.34 Aligned_cols=36 Identities=11% Similarity=0.352 Sum_probs=29.5
Q ss_pred CCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 151 DCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 151 ~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
.+++|+|||||+.|+.+|..|+ +.| .+|+++.+.+.
T Consensus 536 ~~kkVaIIGGGPAGLSAA~~LA--------------------r~G-~~VTV~Ek~~~ 571 (1012)
T TIGR03315 536 SAHKVAVIGAGPAGLSAGYFLA--------------------RAG-HPVTVFEKKEK 571 (1012)
T ss_pred CCCcEEEECCCHHHHHHHHHHH--------------------HCC-CeEEEEecccc
Confidence 4679999999999999999886 244 46999988754
|
Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase. |
| >PLN02985 squalene monooxygenase | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.072 Score=53.81 Aligned_cols=65 Identities=12% Similarity=0.136 Sum_probs=38.2
Q ss_pred hhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 249 RKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.++...+.+... ...++++..+ +++++..+ ++.+.++++.+. .++..++.+|+||.|.|.....
T Consensus 146 r~~l~~~L~~~a~-------~~~~V~i~~g-tvv~li~~-~~~v~gV~~~~~----dG~~~~~~AdLVVgADG~~S~v 210 (514)
T PLN02985 146 NGRFVQRLRQKAS-------SLPNVRLEEG-TVKSLIEE-KGVIKGVTYKNS----AGEETTALAPLTVVCDGCYSNL 210 (514)
T ss_pred cHHHHHHHHHHHH-------hCCCeEEEee-eEEEEEEc-CCEEEEEEEEcC----CCCEEEEECCEEEECCCCchHH
Confidence 3445555554432 1346888765 45655543 355666665321 2333467899999999987653
|
|
| >PLN02661 Putative thiazole synthesis | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.074 Score=50.49 Aligned_cols=54 Identities=9% Similarity=0.108 Sum_probs=36.9
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCcc-cc--C---CceeEEecceEEEccccCC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQA-LV--T---EDTELIPSGIAFRSIGYQS 324 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~-~~--~---~~~~~l~~D~Vi~a~G~~p 324 (388)
..+++++.+..+.++..+ ++++.++.+..... .. . .+...+.|+.||+|||-.+
T Consensus 185 ~~gVkI~~~t~V~DLI~~-~grVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh~g 244 (357)
T PLN02661 185 RPNVKLFNAVAAEDLIVK-GDRVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGHDG 244 (357)
T ss_pred cCCCEEEeCeEeeeEEec-CCEEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCCCC
Confidence 468999999999998875 47788876431000 00 0 1224789999999999654
|
|
| >PRK12810 gltD glutamate synthase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.032 Score=55.72 Aligned_cols=37 Identities=22% Similarity=0.564 Sum_probs=30.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKLPVP 50 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~~~~ 50 (388)
..++|+|||+|+.|+.+|..+.+ .|. +|++++..+.+
T Consensus 280 ~gk~VvVIGgG~~g~e~A~~~~~--~ga~~Vt~~~~~~~~ 317 (471)
T PRK12810 280 KGKHVVVIGGGDTGMDCVGTAIR--QGAKSVTQRDIMPMP 317 (471)
T ss_pred CCCEEEEECCcHHHHHHHHHHHH--cCCCeEEEccccCCC
Confidence 46899999999999999998887 665 78887766443
|
|
| >PRK06481 fumarate reductase flavoprotein subunit; Validated | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.048 Score=55.04 Aligned_cols=51 Identities=16% Similarity=0.268 Sum_probs=38.3
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccc-cCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIG-YQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G-~~p~ 325 (388)
+.|+++++++.++++..+ +++|.++.+... .++...+.+|.||+|+| |.+|
T Consensus 202 ~~gv~i~~~t~v~~l~~~-~g~V~Gv~~~~~----~g~~~~i~a~~VVlAtGG~~~n 253 (506)
T PRK06481 202 ERKIPLFVNADVTKITEK-DGKVTGVKVKIN----GKETKTISSKAVVVTTGGFGAN 253 (506)
T ss_pred HcCCeEEeCCeeEEEEec-CCEEEEEEEEeC----CCeEEEEecCeEEEeCCCcccC
Confidence 568999999999999864 478888766421 22345799999999998 6554
|
|
| >PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.03 Score=59.66 Aligned_cols=36 Identities=17% Similarity=0.184 Sum_probs=29.9
Q ss_pred CCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecC
Q psy4525 150 LDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRG 206 (388)
Q Consensus 150 ~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~ 206 (388)
..+++|+|||+|+.|+.+|..|+ +.| .+|+++.+..
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La--------------------~~G-h~Vtv~E~~~ 416 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLL--------------------RSG-HNVTAIDGLK 416 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHH--------------------hCC-CeEEEEcccc
Confidence 45799999999999999999887 234 4799999763
|
|
| >PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.11 Score=50.83 Aligned_cols=46 Identities=4% Similarity=0.104 Sum_probs=33.4
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
.+++++++..++.+..+++ . ..+.+ .+++++.||+||.|.|.+...
T Consensus 125 ~~v~v~~~~~v~~i~~~~~-~-~~v~~--------~~g~~~~a~lvIgADG~~S~v 170 (405)
T PRK08850 125 DNVTLLMPARCQSIAVGES-E-AWLTL--------DNGQALTAKLVVGADGANSWL 170 (405)
T ss_pred CCeEEEcCCeeEEEEeeCC-e-EEEEE--------CCCCEEEeCEEEEeCCCCChh
Confidence 5799999999999875432 2 23433 344689999999999987543
|
|
| >PRK07121 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.049 Score=54.74 Aligned_cols=48 Identities=15% Similarity=0.157 Sum_probs=37.5
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEec-ceEEEcccc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPS-GIAFRSIGY 322 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~-D~Vi~a~G~ 322 (388)
+.|+++++++.++++..++++++.++.... .++...+.+ +.||+|||-
T Consensus 189 ~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~-----~~~~~~i~a~k~VVlAtGg 237 (492)
T PRK07121 189 ALGVQIRYDTRATRLIVDDDGRVVGVEARR-----YGETVAIRARKGVVLAAGG 237 (492)
T ss_pred hCCCEEEeCCEEEEEEECCCCCEEEEEEEe-----CCcEEEEEeCCEEEECCCC
Confidence 568999999999999876557888887632 233456888 999999993
|
|
| >PRK07512 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.012 Score=59.41 Aligned_cols=34 Identities=29% Similarity=0.448 Sum_probs=29.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
...||+|||+|.||+.||..++. .+|+|+|+.+.
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa~----~~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLAP----RPVVVLSPAPL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhCc----CCEEEEECCCC
Confidence 35799999999999999999863 59999999876
|
|
| >PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.13 Score=49.96 Aligned_cols=44 Identities=9% Similarity=0.190 Sum_probs=29.9
Q ss_pred eEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 272 YFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 272 gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
++. +++..++.+..+++ .+ .+.+ .+++++.+|.||.|.|.....
T Consensus 126 ~~~-~~~~~v~~i~~~~~-~~-~v~~--------~~g~~~~a~~vI~AdG~~S~v 169 (388)
T PRK07494 126 NIT-RFGDEAESVRPRED-EV-TVTL--------ADGTTLSARLVVGADGRNSPV 169 (388)
T ss_pred CcE-EECCeeEEEEEcCC-eE-EEEE--------CCCCEEEEeEEEEecCCCchh
Confidence 455 77888888875432 22 2332 334679999999999987643
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.02 Score=51.12 Aligned_cols=32 Identities=19% Similarity=0.343 Sum_probs=30.3
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
++++|||+|..|.+.|..|.+ .|.+|+++|+.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~--~g~~Vv~Id~d 32 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSE--EGHNVVLIDRD 32 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHh--CCCceEEEEcC
Confidence 479999999999999999999 89999999987
|
|
| >KOG4254|consensus | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.0099 Score=57.09 Aligned_cols=51 Identities=18% Similarity=0.292 Sum_probs=42.2
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCc
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHP 63 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~ 63 (388)
++.+|++|||+|.-||.||.+|++ -+.+|.++|+....||.- ...+.|.+.
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r--~g~~V~vlerrhv~gGaavteeivpGfK 63 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLAR--YGQSVAVLERRHVIGGAAVTEEIVPGFK 63 (561)
T ss_pred CcccceEEecCCccchhHHHHHHh--cCcceEEEEEeeecCcceeeehhccccc
Confidence 567999999999999999999999 899999999997776654 334456654
|
|
| >PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.17 Score=48.95 Aligned_cols=60 Identities=15% Similarity=0.155 Sum_probs=39.2
Q ss_pred hhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 249 RKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+..+...|.+.+. ...++.+++++.++++..+++ .+ .+.+ +++ ++.+|+||.|-|.+...
T Consensus 103 r~~L~~~L~~~~~-------~~~~v~~~~~~~v~~i~~~~~-~v-~v~~--------~~~-~~~adlvIgADG~~S~v 162 (374)
T PRK06617 103 NSDFKKILLSKIT-------NNPLITLIDNNQYQEVISHND-YS-IIKF--------DDK-QIKCNLLIICDGANSKV 162 (374)
T ss_pred HHHHHHHHHHHHh-------cCCCcEEECCCeEEEEEEcCC-eE-EEEE--------cCC-EEeeCEEEEeCCCCchh
Confidence 4555555555432 123588999999999876443 22 2433 233 79999999999988655
|
|
| >PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.08 Score=51.22 Aligned_cols=42 Identities=14% Similarity=0.028 Sum_probs=28.4
Q ss_pred EEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 274 RPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 274 ~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
...++..++.+...++ ...+ .+.++.++.|+.||-|.|..+.
T Consensus 102 ~~~~~~~V~~i~~~~~--~~~v--------~~~~g~~i~a~~VvDa~g~~~~ 143 (374)
T PF05834_consen 102 VIRLNARVTSIEETGD--GVLV--------VLADGRTIRARVVVDARGPSSP 143 (374)
T ss_pred eEEEccEEEEEEecCc--eEEE--------EECCCCEEEeeEEEECCCcccc
Confidence 3556778888875432 2222 2455668999999999997654
|
Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process |
| >COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.011 Score=60.02 Aligned_cols=37 Identities=27% Similarity=0.288 Sum_probs=33.8
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
...+|+||||+|.+|..+|..|.. ++.+|+|+|+...
T Consensus 5 ~~~~D~vIVGsG~aG~~lA~rLs~--~g~~VllLEaG~~ 41 (542)
T COG2303 5 KMEYDYVIVGSGSAGSVLAARLSD--AGLSVLVLEAGGP 41 (542)
T ss_pred cCCCCEEEECCCchhHHHHHHhcC--CCCeEEEEeCCCC
Confidence 456899999999999999999997 9999999998843
|
|
| >PRK06996 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.089 Score=51.33 Aligned_cols=46 Identities=11% Similarity=0.159 Sum_probs=30.8
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEcccc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
..++.+++++.++++..++++ + .+.+.++ +.++++.||+||-|-|.
T Consensus 127 ~~g~~~~~~~~v~~~~~~~~~-v-~v~~~~~-----~g~~~i~a~lvIgADG~ 172 (398)
T PRK06996 127 GTPVRWLTSTTAHAPAQDADG-V-TLALGTP-----QGARTLRARIAVQAEGG 172 (398)
T ss_pred hCCCEEEcCCeeeeeeecCCe-E-EEEECCC-----CcceEEeeeEEEECCCC
Confidence 457889999998888654333 2 2333221 11267999999999995
|
|
| >TIGR02023 BchP-ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.11 Score=50.35 Aligned_cols=53 Identities=6% Similarity=0.028 Sum_probs=30.6
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
+.|++++.. .++++..++ +.+ .+.+.++..-..+...++.+|.||.|.|....
T Consensus 104 ~~G~~v~~~-~v~~v~~~~-~~~-~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~ 156 (388)
T TIGR02023 104 KAGAELIHG-LFLKLERDR-DGV-TLTYRTPKKGAGGEKGSVEADVVIGADGANSP 156 (388)
T ss_pred hCCCEEEee-EEEEEEEcC-CeE-EEEEEeccccCCCcceEEEeCEEEECCCCCcH
Confidence 457888654 577776543 322 34432210000123357999999999997654
|
This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ). |
| >TIGR01789 lycopene_cycl lycopene cyclase | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.086 Score=50.90 Aligned_cols=34 Identities=15% Similarity=0.106 Sum_probs=26.0
Q ss_pred eEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecC
Q psy4525 154 EATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRG 206 (388)
Q Consensus 154 ~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~ 206 (388)
.|+|||||..|+.+|..|++. ....+|.++.+.+
T Consensus 1 DviIvGaG~AGl~lA~~L~~~-------------------~~g~~V~lle~~~ 34 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRA-------------------RPDFRIRVIEAGR 34 (370)
T ss_pred CEEEECccHHHHHHHHHHHhc-------------------CCCCeEEEEeCCC
Confidence 489999999999999988611 1134699998876
|
This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium. |
| >PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.028 Score=61.24 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=29.5
Q ss_pred CCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 151 DCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 151 ~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
.+++|+|||+|+.|+.+|..|+ +.+ .+|+++.+.+.
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La--------------------~~G-~~VtV~E~~~~ 464 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLV--------------------KYG-VDVTVYEALHV 464 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHH--------------------HcC-CcEEEEecCCC
Confidence 4689999999999999999886 244 46999997754
|
|
| >PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes [] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.024 Score=57.30 Aligned_cols=35 Identities=17% Similarity=0.397 Sum_probs=25.3
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcc
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGAL 208 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~ 208 (388)
|+|+|||+|.+|+-.|..|. ..|. ++++++|++.+
T Consensus 2 krVaVIGaG~sGL~a~k~l~--------------------e~g~-~~~~fE~~~~i 36 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLL--------------------EEGL-EVTCFEKSDDI 36 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHH--------------------HTT--EEEEEESSSSS
T ss_pred CEEEEECccHHHHHHHHHHH--------------------HCCC-CCeEEecCCCC
Confidence 79999999999999999775 2454 69999987653
|
Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A .... |
| >KOG2665|consensus | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.011 Score=54.20 Aligned_cols=41 Identities=22% Similarity=0.297 Sum_probs=36.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
...+|+||||||..|++.|..|.-+.++.+|.++|++..++
T Consensus 46 ~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la 86 (453)
T KOG2665|consen 46 KERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLA 86 (453)
T ss_pred cccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhc
Confidence 46799999999999999999998877899999999986543
|
|
| >TIGR02028 ChlP geranylgeranyl reductase | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.15 Score=49.85 Aligned_cols=33 Identities=21% Similarity=0.365 Sum_probs=27.3
Q ss_pred eEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 154 EATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 154 ~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
+|+|||+|+.|+-+|..|+ +.|. +|.++.|...
T Consensus 2 ~VvIVGaGPAG~~aA~~la--------------------~~G~-~V~llE~~~~ 34 (398)
T TIGR02028 2 RVAVVGGGPAGASAAETLA--------------------SAGI-QTFLLERKPD 34 (398)
T ss_pred eEEEECCcHHHHHHHHHHH--------------------hCCC-cEEEEecCCC
Confidence 6999999999999999876 3454 5999998754
|
This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll. |
| >PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.046 Score=52.09 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=29.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
...++|+|||||-++...+..|.+..+..+|+++-|.+.
T Consensus 188 ~~~~~V~VVGgGQSAAEi~~~L~~~~~~~~V~~i~R~~~ 226 (341)
T PF13434_consen 188 LAGKRVAVVGGGQSAAEIFLDLLRRGPEAKVTWISRSPG 226 (341)
T ss_dssp ---EEEEEE-SSHHHHHHHHHHHHH-TTEEEEEEESSSS
T ss_pred cCCCeEEEECCcHhHHHHHHHHHhCCCCcEEEEEECCCc
Confidence 456899999999999999999999544468999988754
|
|
| >PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.2 Score=48.56 Aligned_cols=46 Identities=11% Similarity=0.131 Sum_probs=32.6
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
.|+++++++.++++..++ +.+ .+.+ .++..+.+|.||.|.|.....
T Consensus 126 ~g~~~~~~~~v~~i~~~~-~~~-~v~~--------~~g~~~~a~~vI~AdG~~S~v 171 (395)
T PRK05732 126 PGVTLHCPARVANVERTQ-GSV-RVTL--------DDGETLTGRLLVAADGSHSAL 171 (395)
T ss_pred CCcEEEcCCEEEEEEEcC-CeE-EEEE--------CCCCEEEeCEEEEecCCChhh
Confidence 578999999999887543 222 2332 334578999999999987643
|
|
| >TIGR01810 betA choline dehydrogenase | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.013 Score=59.41 Aligned_cols=49 Identities=12% Similarity=0.074 Sum_probs=37.0
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
+.+++++.++.+++|..+ ++++.++++.++ ......+.++.||+|.|.-
T Consensus 206 r~nl~i~~~~~V~rI~~~-~~ra~GV~~~~~----~~~~~~~~ak~VIlaAGai 254 (532)
T TIGR01810 206 RPNLEVQTRAFVTKINFE-GNRATGVEFKKG----GRKEHTEANKEVILSAGAI 254 (532)
T ss_pred CCCeEEEeCCEEEEEEec-CCeEEEEEEEeC----CcEEEEEEeeeEEEccCCC
Confidence 567999999999999875 578888877432 1122346899999999974
|
This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified. |
| >PF00890 FAD_binding_2: FAD binding domain of the Pfam family | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.087 Score=51.65 Aligned_cols=52 Identities=15% Similarity=0.110 Sum_probs=37.6
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
+.++++++++.++++..+ +++|.++...+. ..+....+.++.||+|||--..
T Consensus 153 ~~gv~i~~~~~~~~Li~e-~g~V~Gv~~~~~---~~g~~~~i~A~aVIlAtGG~~~ 204 (417)
T PF00890_consen 153 EAGVDIRFNTRVTDLITE-DGRVTGVVAENP---ADGEFVRIKAKAVILATGGFGG 204 (417)
T ss_dssp HTTEEEEESEEEEEEEEE-TTEEEEEEEEET---TTCEEEEEEESEEEE----BGG
T ss_pred hcCeeeeccceeeeEEEe-CCceeEEEEEEC---CCCeEEEEeeeEEEeccCcccc
Confidence 567999999999999885 579999988632 1355567899999999986554
|
; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A .... |
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.082 Score=55.08 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=31.0
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKLP 48 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~~ 48 (388)
...++|+|||+|..|+.+|..+.+ .|. +|+++.+.+
T Consensus 321 ~~gk~VvVIGgG~~a~e~A~~l~~--~Ga~~Vtlv~r~~ 357 (652)
T PRK12814 321 HPGKKVVVIGGGNTAIDAARTALR--LGAESVTILYRRT 357 (652)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHH--cCCCeEEEeeecC
Confidence 346899999999999999999998 776 599998764
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.026 Score=47.38 Aligned_cols=34 Identities=18% Similarity=0.237 Sum_probs=30.8
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEK 46 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~ 46 (388)
-..++|+|||||..|..-+..|.+ .|.+|+++++
T Consensus 11 l~~~~vlVvGGG~va~rka~~Ll~--~ga~V~VIsp 44 (157)
T PRK06719 11 LHNKVVVIIGGGKIAYRKASGLKD--TGAFVTVVSP 44 (157)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEcC
Confidence 356899999999999999999999 8999999963
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.028 Score=53.42 Aligned_cols=47 Identities=15% Similarity=0.225 Sum_probs=38.3
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDH 62 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~ 62 (388)
++|.|||.|+.|+..|..+++ .|.+|+++|..+.--..++.|..|-+
T Consensus 1 MkI~viGtGYVGLv~g~~lA~--~GHeVv~vDid~~KV~~ln~g~~PI~ 47 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAE--LGHEVVCVDIDESKVELLNKGISPIY 47 (414)
T ss_pred CceEEECCchHHHHHHHHHHH--cCCeEEEEeCCHHHHHHHhCCCCCCc
Confidence 379999999999999999999 89999999987554345566665654
|
|
| >PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.096 Score=53.79 Aligned_cols=49 Identities=16% Similarity=0.123 Sum_probs=37.3
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecc-eEEEccc-cC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSG-IAFRSIG-YQ 323 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D-~Vi~a~G-~~ 323 (388)
..|+++++++.++++..+++|+|.++.... .++...+.+. .||+||| |.
T Consensus 225 ~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~-----~~~~~~i~a~~aVilAtGGf~ 275 (584)
T PRK12835 225 DAGVPLWLDSPMTELITDPDGAVVGAVVER-----EGRTLRIGARRGVILATGGFD 275 (584)
T ss_pred hCCceEEeCCEEEEEEECCCCcEEEEEEEe-----CCcEEEEEeceeEEEecCccc
Confidence 568999999999999886668999987632 3444568887 5877776 44
|
|
| >TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.095 Score=57.25 Aligned_cols=83 Identities=7% Similarity=0.049 Sum_probs=58.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
..++|+|||+|+.|+.+|..|.+ .|. .|+|+|..+.+ ...+.+.+++.+++++.++.+.
T Consensus 316 ~gk~VvViG~G~~g~e~A~~L~~--~G~~vV~vv~~~~~~------------------~~~l~~~L~~~GV~i~~~~~v~ 375 (985)
T TIGR01372 316 PGKRIVVATNNDSAYRAAADLLA--AGIAVVAIIDARADV------------------SPEARAEARELGIEVLTGHVVA 375 (985)
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--cCCceEEEEccCcch------------------hHHHHHHHHHcCCEEEcCCeEE
Confidence 35899999999999999999999 785 57899876332 1123345667789888776542
Q ss_pred E--------Eeeec----cc-ccccCEEEEeeCCCCC
Q psy4525 91 Q--------DISLG----DL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 91 ~--------~~~~~----~~-~~~yd~lvlAtG~~~~ 114 (388)
. .+++. +. ...+|.|+++.|..|.
T Consensus 376 ~i~g~~~v~~V~l~~~~g~~~~i~~D~V~va~G~~Pn 412 (985)
T TIGR01372 376 ATEGGKRVSGVAVARNGGAGQRLEADALAVSGGWTPV 412 (985)
T ss_pred EEecCCcEEEEEEEecCCceEEEECCEEEEcCCcCch
Confidence 1 12222 11 2368999999998773
|
This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms |
| >PRK08274 tricarballylate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.28 Score=48.96 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=36.3
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIG 321 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G 321 (388)
+.|+++++++.++++..+ ++++.++...+ ..++...+.++.||+|+|
T Consensus 143 ~~gv~i~~~t~v~~l~~~-~g~v~gv~~~~----~~g~~~~i~a~~VIlAtG 189 (466)
T PRK08274 143 RLGVEIRYDAPVTALELD-DGRFVGARAGS----AAGGAERIRAKAVVLAAG 189 (466)
T ss_pred HCCCEEEcCCEEEEEEec-CCeEEEEEEEc----cCCceEEEECCEEEECCC
Confidence 568999999999999864 57788776532 134456789999999998
|
|
| >PLN02785 Protein HOTHEAD | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.03 Score=57.43 Aligned_cols=35 Identities=26% Similarity=0.267 Sum_probs=31.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
..+|++|||+|.||+.+|..|.+ +.+|+|+|+.+.
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~---~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ---NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc---CCcEEEEecCCC
Confidence 45899999999999999999998 489999999864
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=95.21 E-value=0.097 Score=54.62 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=30.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~~~ 49 (388)
..++|+|||+|..|+.+|..+.+ .|. +|+++.+.+.
T Consensus 467 ~gk~VvVIGgG~~a~d~A~~a~r--~ga~~Vt~i~~~~~ 503 (654)
T PRK12769 467 AGLNVVVLGGGDTAMDCVRTALR--HGASNVTCAYRRDE 503 (654)
T ss_pred CCCeEEEECCcHHHHHHHHHHHH--cCCCeEEEeEecCC
Confidence 35799999999999999998888 776 6999887643
|
|
| >COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.087 Score=52.43 Aligned_cols=48 Identities=21% Similarity=0.258 Sum_probs=37.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGV 58 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~ 58 (388)
....+++|||||-+|-..+..+++......|-++|.++..-|.--+|+
T Consensus 114 ~~~~r~lIiGAG~ag~~l~r~~~~~~~~~pV~fiDdd~~~~g~~i~Gv 161 (588)
T COG1086 114 DNRIRLLIIGAGSAGDLLLRALRRDPEYTPVAFLDDDPDLTGMKIRGV 161 (588)
T ss_pred cCCCceEEEcCchHHHHHHHHHHhCCCcceEEEECCChhhcCCEEece
Confidence 345899999999999999999998644446778898877666655565
|
|
| >COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.13 Score=48.10 Aligned_cols=86 Identities=14% Similarity=0.204 Sum_probs=58.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++|+|||||.+++..|..|.+ -..+|+++-|.+.+ ...+.+.+.+.+ ..++.++.++.+..
T Consensus 142 ~~k~v~ViGgG~sAve~Al~L~~--~a~~Vtlv~r~~~~------------ra~~~~~~~l~~---~~~i~~~~~~~i~e 204 (305)
T COG0492 142 KGKDVVVIGGGDSAVEEALYLSK--IAKKVTLVHRRDEF------------RAEEILVERLKK---NVKIEVLTNTVVKE 204 (305)
T ss_pred cCCeEEEEcCCHHHHHHHHHHHH--hcCeEEEEecCccc------------CcCHHHHHHHHh---cCCeEEEeCCceeE
Confidence 34699999999999999999999 78889999988543 222233333322 22677776655421
Q ss_pred -------Eeeeccc-----ccccCEEEEeeCCCCC
Q psy4525 92 -------DISLGDL-----TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 -------~~~~~~~-----~~~yd~lvlAtG~~~~ 114 (388)
.+.+.+. ...+|.++++.|..|+
T Consensus 205 i~G~~v~~v~l~~~~~~~~~~~~~gvf~~iG~~p~ 239 (305)
T COG0492 205 ILGDDVEGVVLKNVKGEEKELPVDGVFIAIGHLPN 239 (305)
T ss_pred EecCccceEEEEecCCceEEEEeceEEEecCCCCc
Confidence 2233221 2268999999998874
|
|
| >PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.074 Score=54.21 Aligned_cols=53 Identities=11% Similarity=0.166 Sum_probs=38.9
Q ss_pred CceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 269 CSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 269 ~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
...|+++++++.++.+..+ ++++.++++.+. .++++.++.||.||.|+|.-..
T Consensus 160 ~~~Ga~i~~~t~V~~i~~~-~~~v~gv~v~d~---~~g~~~~i~A~~VVnAaG~wa~ 212 (546)
T PRK11101 160 KEHGAQILTYHEVTGLIRE-GDTVCGVRVRDH---LTGETQEIHAPVVVNAAGIWGQ 212 (546)
T ss_pred HhCCCEEEeccEEEEEEEc-CCeEEEEEEEEc---CCCcEEEEECCEEEECCChhHH
Confidence 4568999999999998764 467777765432 1344568999999999997543
|
|
| >KOG1238|consensus | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.027 Score=56.77 Aligned_cols=39 Identities=26% Similarity=0.299 Sum_probs=34.4
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
...+|.+|||||.||+.+|..|.+. +..+|.++|+...+
T Consensus 55 ~~~yDyIVVGgGtAGcvlAarLSEn-~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 55 DSSYDYIVVGGGTAGCVLAARLSEN-PNWSVLLLEAGGDP 93 (623)
T ss_pred ccCCCEEEECCCchhHHHHHhhccC-CCceEEEEecCCCC
Confidence 4569999999999999999999985 77999999988654
|
|
| >KOG2853|consensus | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.043 Score=51.02 Aligned_cols=37 Identities=22% Similarity=0.194 Sum_probs=32.6
Q ss_pred CCcEEEECccHHHHHHHHHHHhhC--CCCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLL--PQSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~--~g~~v~lie~~~~ 49 (388)
.-+|+|||||-.|.+.|..|.++. .|++|+++|+.+.
T Consensus 86 ~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddt 124 (509)
T KOG2853|consen 86 HCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDT 124 (509)
T ss_pred ccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCc
Confidence 468999999999999999999863 5799999999864
|
|
| >TIGR02485 CobZ_N-term precorrin 3B synthase CobZ | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.021 Score=56.33 Aligned_cols=30 Identities=27% Similarity=0.469 Sum_probs=28.3
Q ss_pred EECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 18 IVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 18 IIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
|||+|.||++||..+++ .|.+|+|+|+.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~--~Ga~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARR--AGASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHh--CCCcEEEEeCCCC
Confidence 79999999999999999 8999999999874
|
CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484). |
| >TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6 | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.38 Score=47.56 Aligned_cols=47 Identities=13% Similarity=0.150 Sum_probs=33.0
Q ss_pred eEEEEecCcceeeeeC-----CCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 272 YFRPIFLRSPTEFKLN-----DNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 272 gv~~~~~~~~~~i~~~-----~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
++++++++.++++..+ +++....+.+ .+++++.||+||-|-|.+...
T Consensus 134 ~v~i~~~~~v~~i~~~~~~~~~~~~~v~v~~--------~~g~~i~a~llVgADG~~S~v 185 (437)
T TIGR01989 134 NVKILNPARLISVTIPSKYPNDNSNWVHITL--------SDGQVLYTKLLIGADGSNSNV 185 (437)
T ss_pred CeEEecCCeeEEEEeccccccCCCCceEEEE--------cCCCEEEeeEEEEecCCCChh
Confidence 5999999999998642 1122223433 345689999999999988654
|
This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone |
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.028 Score=43.54 Aligned_cols=34 Identities=24% Similarity=0.327 Sum_probs=30.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
+.++|+|||+|..|..-+..|.+ .|.+|+++.+.
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~--~gA~v~vis~~ 39 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLE--AGAKVTVISPE 39 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCC--CTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CCCEEEEECCc
Confidence 46899999999999999999999 89999999866
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.39 Score=50.23 Aligned_cols=59 Identities=10% Similarity=0.133 Sum_probs=39.0
Q ss_pred eEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC--CCCcccCCCccc
Q psy4525 272 YFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD--SDIPFNEKSCTV 340 (388)
Q Consensus 272 gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~--~~l~~~~~~gi~ 340 (388)
|+++++++.++++...+ +.+. +. +.++..+.||.||+|+|.....+. ..+|+...+|.+
T Consensus 421 Gv~i~~~~~V~~i~~~~-~~~~-v~--------t~~g~~~~ad~VV~A~G~~s~~l~~~~~lpl~p~RGqv 481 (662)
T PRK01747 421 QLTIHFGHEVARLERED-DGWQ-LD--------FAGGTLASAPVVVLANGHDAARFAQTAHLPLYSVRGQV 481 (662)
T ss_pred CcEEEeCCEeeEEEEeC-CEEE-EE--------ECCCcEEECCEEEECCCCCccccccccCCCcccccceE
Confidence 89999998888887543 3332 32 344556789999999998765442 235555555544
|
|
| >PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.057 Score=47.33 Aligned_cols=56 Identities=13% Similarity=0.173 Sum_probs=36.4
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccC----ccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQ----QALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~----~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.|+++.....+..+...++++|.++...-. ...-. +--.+.+..||=|||...+.
T Consensus 108 ~aGakifn~~~vEDvi~r~~~rV~GvViNWt~V~~~glHv-DPl~i~ak~ViDaTGHda~v 167 (230)
T PF01946_consen 108 DAGAKIFNLTSVEDVIVREDDRVAGVVINWTPVEMAGLHV-DPLTIRAKVVIDATGHDAEV 167 (230)
T ss_dssp TTTEEEEETEEEEEEEEECSCEEEEEEEEEHHHHTT--T--B-EEEEESEEEE---SSSSS
T ss_pred cCCCEEEeeeeeeeeEEEcCCeEEEEEEEehHHhHhhcCC-CcceEEEeEEEeCCCCchHH
Confidence 5899999998888887654579999877611 00001 22478999999999988754
|
|
| >TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.42 Score=49.35 Aligned_cols=49 Identities=16% Similarity=0.050 Sum_probs=37.5
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEcccc
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
.+|++++++.++++..+++++|.++...+. .++....+.|+.||+|||=
T Consensus 146 ~gV~i~~~t~v~~Li~dd~grV~GV~~~~~---~~g~~~~i~AkaVVLATGG 194 (603)
T TIGR01811 146 GLVEKYEGWEMLDIIVVDGNRARGIIARNL---VTGEIETHSADAVILATGG 194 (603)
T ss_pred CCcEEEeCcEEEEEEEcCCCEEEEEEEEEC---CCCcEEEEEcCEEEECCCC
Confidence 479999999999998755578888876431 1233457899999999985
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes. |
| >COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.071 Score=54.53 Aligned_cols=93 Identities=13% Similarity=0.165 Sum_probs=62.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
+..++-+|||+|.-|+.+|..|.. .|.++++++-.+.+ +. ......--..++..+++.|++++++..+.
T Consensus 143 r~~~~avVIGGGLLGlEaA~~L~~--~Gm~~~Vvh~~~~l--Me-------rQLD~~ag~lL~~~le~~Gi~~~l~~~t~ 211 (793)
T COG1251 143 RNKKKAVVIGGGLLGLEAARGLKD--LGMEVTVVHIAPTL--ME-------RQLDRTAGRLLRRKLEDLGIKVLLEKNTE 211 (793)
T ss_pred hccCCcEEEccchhhhHHHHHHHh--CCCceEEEeecchH--HH-------HhhhhHHHHHHHHHHHhhcceeecccchh
Confidence 445668999999999999999999 89999999855321 10 01112222334556677888888765432
Q ss_pred E--------Eeeeccccc-ccCEEEEeeCCCCC
Q psy4525 91 Q--------DISLGDLTN-AYHAVVLTYGADND 114 (388)
Q Consensus 91 ~--------~~~~~~~~~-~yd~lvlAtG~~~~ 114 (388)
. .+...++.. .+|-||+|+|..|.
T Consensus 212 ei~g~~~~~~vr~~DG~~i~ad~VV~a~GIrPn 244 (793)
T COG1251 212 EIVGEDKVEGVRFADGTEIPADLVVMAVGIRPN 244 (793)
T ss_pred hhhcCcceeeEeecCCCcccceeEEEecccccc
Confidence 1 133344433 79999999998873
|
|
| >PRK06175 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.45 Score=47.02 Aligned_cols=47 Identities=15% Similarity=0.000 Sum_probs=34.6
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEcccc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
..||++++++.++++..+ ++++.++.... .++...+.|+.||+|||-
T Consensus 141 ~~gV~i~~~t~v~~Li~~-~~~v~Gv~~~~-----~g~~~~i~Ak~VILAtGG 187 (433)
T PRK06175 141 RKNITIIENCYLVDIIEN-DNTCIGAICLK-----DNKQINIYSKVTILATGG 187 (433)
T ss_pred cCCCEEEECcEeeeeEec-CCEEEEEEEEE-----CCcEEEEEcCeEEEccCc
Confidence 358999999999998764 46777764321 233347899999999995
|
|
| >TIGR00551 nadB L-aspartate oxidase | Back alignment and domain information |
|---|
Probab=94.73 E-value=0.44 Score=47.84 Aligned_cols=49 Identities=16% Similarity=0.188 Sum_probs=36.8
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
.+|++++++.++++..+ ++.+.++...+ .+....+.++.||+|||-...
T Consensus 142 ~gi~i~~~~~v~~l~~~-~g~v~Gv~~~~-----~~~~~~i~A~~VVlAtGG~~~ 190 (488)
T TIGR00551 142 PNIRIIEGENALDLLIE-TGRVVGVWVWN-----RETVETCHADAVVLATGGAGK 190 (488)
T ss_pred CCcEEEECeEeeeeecc-CCEEEEEEEEE-----CCcEEEEEcCEEEECCCcccC
Confidence 58999999999999764 46777776532 123357899999999997543
|
L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA. |
| >TIGR00275 flavoprotein, HI0933 family | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.2 Score=49.00 Aligned_cols=43 Identities=9% Similarity=-0.050 Sum_probs=30.7
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
+.|+++++++.++++..++ + ...++. ++.++.+|.||+|+|..
T Consensus 117 ~~gv~i~~~~~V~~i~~~~-~-~~~v~~---------~~~~i~ad~VIlAtG~~ 159 (400)
T TIGR00275 117 ELGVEILTNSKVKSIKKDD-N-GFGVET---------SGGEYEADKVILATGGL 159 (400)
T ss_pred HCCCEEEeCCEEEEEEecC-C-eEEEEE---------CCcEEEcCEEEECCCCc
Confidence 5689999999999987533 2 223322 23468999999999964
|
The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae. |
| >PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.047 Score=53.15 Aligned_cols=40 Identities=20% Similarity=0.301 Sum_probs=36.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
..+|||+||||..|.+++..|++..+..+|.||||.+.++
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~A 41 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSVA 41 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcch
Confidence 3579999999999999999999988999999999987654
|
The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process |
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.08 Score=54.21 Aligned_cols=37 Identities=14% Similarity=0.150 Sum_probs=29.8
Q ss_pred CCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 150 LDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 150 ~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
..+++|+|||+|.+|+-+|..|. ..|. +|+++.+.+.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~--------------------~~G~-~V~v~e~~~~ 171 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLR--------------------RMGH-AVTIFEAGPK 171 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHH--------------------HCCC-eEEEEecCCC
Confidence 35789999999999999999775 3454 5999987653
|
|
| >TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.49 Score=46.00 Aligned_cols=51 Identities=4% Similarity=0.077 Sum_probs=31.6
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
..++.++++..++.+...++.. ..+.+.. .++..++.+|+||-|-|.+...
T Consensus 115 ~~g~~~~~~~~~v~~~~~~~~~-~~V~~~~-----~g~~~~i~adlvIGADG~~S~V 165 (390)
T TIGR02360 115 AAGLTTVYDADDVRLHDLAGDR-PYVTFER-----DGERHRLDCDFIAGCDGFHGVS 165 (390)
T ss_pred hcCCeEEEeeeeEEEEecCCCc-cEEEEEE-----CCeEEEEEeCEEEECCCCchhh
Confidence 3477888888877775322122 2344320 2333579999999999987643
|
Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway. |
| >PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.18 Score=51.86 Aligned_cols=52 Identities=8% Similarity=-0.016 Sum_probs=37.6
Q ss_pred ceeEEEEecCcceeeeeCCC---CceeEEEEccCccccCCceeEEecceEEEccccCC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDN---GAITGINFANQQALVTEDTELIPSGIAFRSIGYQS 324 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~---~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p 324 (388)
+.||++++++.++++..+++ +++.++...+. .++....+.++.||+|||-..
T Consensus 152 ~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~---~~g~~~~i~AkaVVLATGG~~ 206 (583)
T PRK08205 152 KHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYEL---ATGEIHVFHAKAVVFATGGSG 206 (583)
T ss_pred hcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEc---CCCeEEEEEeCeEEECCCCCc
Confidence 56899999999999876442 78888865221 123334789999999999654
|
|
| >KOG4716|consensus | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.04 Score=51.16 Aligned_cols=90 Identities=12% Similarity=0.125 Sum_probs=62.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEE-
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICL- 89 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v- 89 (388)
..+-+-+|||||..+|.||-.|.- -|++|++.=|+-.+ .-..+++.+...+.++..|+.|......
T Consensus 196 ~~PGkTLvVGa~YVaLECAgFL~g--fg~~vtVmVRSI~L-----------rGFDqdmae~v~~~m~~~Gikf~~~~vp~ 262 (503)
T KOG4716|consen 196 YEPGKTLVVGAGYVALECAGFLKG--FGYDVTVMVRSILL-----------RGFDQDMAELVAEHMEERGIKFLRKTVPE 262 (503)
T ss_pred CCCCceEEEccceeeeehhhhHhh--cCCCcEEEEEEeec-----------ccccHHHHHHHHHHHHHhCCceeecccce
Confidence 455678899999999999999999 89999988776211 1224567777777788888888754322
Q ss_pred --EE------------EeeecccccccCEEEEeeCCCC
Q psy4525 90 --GQ------------DISLGDLTNAYHAVVLTYGADN 113 (388)
Q Consensus 90 --~~------------~~~~~~~~~~yd~lvlAtG~~~ 113 (388)
.. ..+.++.+..||.|++|.|..+
T Consensus 263 ~Veq~~~g~l~v~~k~t~t~~~~~~~ydTVl~AiGR~~ 300 (503)
T KOG4716|consen 263 RVEQIDDGKLRVFYKNTNTGEEGEEEYDTVLWAIGRKA 300 (503)
T ss_pred eeeeccCCcEEEEeecccccccccchhhhhhhhhcccc
Confidence 11 0111223458999999999544
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.052 Score=45.57 Aligned_cols=31 Identities=16% Similarity=0.322 Sum_probs=29.2
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
+|+|||||..|.++|..|.. .|.+|+++.++
T Consensus 1 KI~ViGaG~~G~AlA~~la~--~g~~V~l~~~~ 31 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD--NGHEVTLWGRD 31 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH--CTEEEEEETSC
T ss_pred CEEEECcCHHHHHHHHHHHH--cCCEEEEEecc
Confidence 58999999999999999999 89999999976
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.069 Score=46.96 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=31.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
..++|+|||||..|...+..|.+ .|.+|+|++..
T Consensus 8 ~gk~vlVvGgG~va~rk~~~Ll~--~ga~VtVvsp~ 41 (205)
T TIGR01470 8 EGRAVLVVGGGDVALRKARLLLK--AGAQLRVIAEE 41 (205)
T ss_pred CCCeEEEECcCHHHHHHHHHHHH--CCCEEEEEcCC
Confidence 45799999999999999999999 89999999865
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PLN00093 geranylgeranyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=94.46 E-value=0.42 Score=47.46 Aligned_cols=34 Identities=21% Similarity=0.265 Sum_probs=27.9
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
-+|+|||||+.|.-+|..|+ +.|. +|.+++|...
T Consensus 40 ~DViIVGaGPAG~~aA~~LA--------------------~~G~-~VlllEr~~~ 73 (450)
T PLN00093 40 LRVAVIGGGPAGACAAETLA--------------------KGGI-ETFLIERKLD 73 (450)
T ss_pred CeEEEECCCHHHHHHHHHHH--------------------hCCC-cEEEEecCCC
Confidence 47999999999999999876 3554 5999998754
|
|
| >TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.54 Score=48.22 Aligned_cols=50 Identities=8% Similarity=-0.010 Sum_probs=36.8
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
+.|+++++++.++++..+ ++++.++...+. ..+....+.|+.||+|||-.
T Consensus 141 ~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~---~~g~~~~i~Ak~VVlAtGG~ 190 (566)
T TIGR01812 141 KLGVSFFNEYFALDLIHD-DGRVRGVVAYDL---KTGEIVFFRAKAVVLATGGY 190 (566)
T ss_pred HcCCEEEeccEEEEEEEe-CCEEEEEEEEEC---CCCcEEEEECCeEEECCCcc
Confidence 458999999999999765 578888765321 12333578999999999953
|
This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase. |
| >PRK06854 adenylylsulfate reductase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.24 Score=51.19 Aligned_cols=46 Identities=9% Similarity=-0.046 Sum_probs=33.3
Q ss_pred eEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccc
Q psy4525 272 YFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIG 321 (388)
Q Consensus 272 gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G 321 (388)
++++++++.++++..+ ++++.++...+. .+++...+.|+.||+|||
T Consensus 147 gV~i~~~~~v~~Li~~-~g~v~Gv~~~~~---~~g~~~~i~AkaVILATG 192 (608)
T PRK06854 147 GDNVLNRVFITDLLVD-DNRIAGAVGFSV---RENKFYVFKAKAVIVATG 192 (608)
T ss_pred CCEEEeCCEEEEEEEe-CCEEEEEEEEEc---cCCcEEEEECCEEEECCC
Confidence 4999999999998754 467777653211 123345789999999999
|
|
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.15 Score=54.08 Aligned_cols=34 Identities=18% Similarity=0.256 Sum_probs=27.2
Q ss_pred eEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCC-CcEEEEEeecCc
Q psy4525 154 EATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSR-IKSVNLVGRRGA 207 (388)
Q Consensus 154 ~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~-~~~V~~i~r~~~ 207 (388)
+|+|||||.+|+=+|..|+ +.+ ..+|+++++...
T Consensus 2 ~V~IIGaGpAGLaaAi~L~--------------------~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMK--------------------LLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHH--------------------HhCCCCeEEEEecCCC
Confidence 6999999999999998775 221 357999998865
|
|
| >PRK08275 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.7 Score=47.21 Aligned_cols=51 Identities=12% Similarity=-0.014 Sum_probs=37.6
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
+.|+++++++.++++..++++++.++...+. ..++...+.++.||+|||-.
T Consensus 149 ~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~---~~g~~~~i~Ak~VIlATGG~ 199 (554)
T PRK08275 149 RARVLITNRIMATRLLTDADGRVAGALGFDC---RTGEFLVIRAKAVILCCGAA 199 (554)
T ss_pred HCCCEEEcceEEEEEEEcCCCeEEEEEEEec---CCCcEEEEECCEEEECCCCc
Confidence 4689999999999998754577887764221 12334578999999999975
|
|
| >PRK07804 L-aspartate oxidase; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.38 Score=49.00 Aligned_cols=54 Identities=7% Similarity=0.032 Sum_probs=36.8
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
+.+|++++++.++++..++++++.++...+...-..+....+.++.||+|||-.
T Consensus 156 ~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~ 209 (541)
T PRK07804 156 ADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGL 209 (541)
T ss_pred hCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCC
Confidence 456999999999999865556888876531000001222578999999999854
|
|
| >KOG2852|consensus | Back alignment and domain information |
|---|
Probab=94.29 E-value=0.022 Score=51.72 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=33.0
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhC----CCCcEEEEcCCCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLL----PQSTVDIYEKLPVPF 51 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~----~g~~v~lie~~~~~g 51 (388)
.+.++|+|||||..|+.+|.+|.+.. ....|++||+....|
T Consensus 8 ~nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~ 52 (380)
T KOG2852|consen 8 GNSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAG 52 (380)
T ss_pred CCceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccc
Confidence 45689999999999999999999941 126899999875443
|
|
| >COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.11 Score=51.61 Aligned_cols=45 Identities=9% Similarity=0.098 Sum_probs=29.0
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
..++.+.-. .+.++..+++.+|.++. +..|..+.|+.||++||.-
T Consensus 113 ~~NL~l~q~-~v~dli~e~~~~v~GV~--------t~~G~~~~a~aVVlTTGTF 157 (621)
T COG0445 113 QPNLHLLQG-EVEDLIVEEGQRVVGVV--------TADGPEFHAKAVVLTTGTF 157 (621)
T ss_pred CCCceehHh-hhHHHhhcCCCeEEEEE--------eCCCCeeecCEEEEeeccc
Confidence 446666433 34444443333577775 5667799999999999953
|
|
| >PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.28 Score=50.51 Aligned_cols=50 Identities=18% Similarity=0.126 Sum_probs=35.9
Q ss_pred eEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCC
Q psy4525 272 YFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQS 324 (388)
Q Consensus 272 gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p 324 (388)
+|+++.++.++++..+++++|.++...+. .++....+.++.||+|||--.
T Consensus 151 ~i~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~~~i~AkaVILATGG~~ 200 (589)
T PRK08641 151 LVTKYEGWEFLGAVLDDEGVCRGIVAQDL---FTMEIESFPADAVIMATGGPG 200 (589)
T ss_pred CcEEEeeEEEEEEEECCCCEEEEEEEEEC---CCCcEEEEECCEEEECCCCCc
Confidence 38888888888887655678988876431 123345789999999998543
|
|
| >PRK08294 phenol 2-monooxygenase; Provisional | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.41 Score=49.69 Aligned_cols=72 Identities=13% Similarity=0.236 Sum_probs=41.4
Q ss_pred hhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCC-ceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 249 RKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNG-AITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~-~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.++.+.|...+... ..++.++++..++.+..++++ .-..+.+.+.....++..+++.||.||-|=|.+...
T Consensus 140 Q~~le~~L~~~l~~~------g~~v~v~~g~~v~~~~~~~~~~~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~V 212 (634)
T PRK08294 140 QARVHDYFLDVMRNS------PTRLEPDYGREFVDLEVDEEGEYPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRV 212 (634)
T ss_pred HHHHHHHHHHHHHhc------CCceEEEeCcEEEEEEECCCCCCCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHH
Confidence 455556665544210 124688889999988754322 223344432100002334689999999999988654
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.18 Score=46.13 Aligned_cols=36 Identities=19% Similarity=0.498 Sum_probs=31.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCC-CcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQ-STVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g-~~v~lie~~~~ 49 (388)
...+|+|||+|-.|..+|..|.+ .| .+++|+|....
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar--~GVg~itLiD~D~V 65 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALAR--TGIGAITLIDMDDV 65 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHH--cCCCEEEEEeCCEe
Confidence 45799999999999999999999 88 58999997643
|
|
| >PRK13984 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.12 E-value=0.16 Score=52.45 Aligned_cols=37 Identities=19% Similarity=0.236 Sum_probs=29.7
Q ss_pred CCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 150 LDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 150 ~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
..+++|+|||+|..|+.+|..|. +.+ .+|+++.+.+.
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~--------------------~~G-~~v~vie~~~~ 317 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLA--------------------TMG-YEVTVYESLSK 317 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHH--------------------HCC-CeEEEEecCCC
Confidence 35789999999999999999776 244 36999987754
|
|
| >PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.33 Score=49.96 Aligned_cols=51 Identities=12% Similarity=0.038 Sum_probs=38.3
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
+.++++++++.++++..+++++|.++...+. ..+....+.++.||+|||--
T Consensus 155 ~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~---~~g~~~~i~AkaVILATGG~ 205 (588)
T PRK08958 155 KNHTTIFSEWYALDLVKNQDGAVVGCTAICI---ETGEVVYFKARATVLATGGA 205 (588)
T ss_pred hcCCEEEeCcEEEEEEECCCCEEEEEEEEEc---CCCcEEEEEcCeEEECCCCc
Confidence 4689999999999988754688888875321 13445678999999999843
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.051 Score=46.99 Aligned_cols=87 Identities=10% Similarity=0.069 Sum_probs=46.3
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEEEe
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQDI 93 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~~ 93 (388)
++|.|||.|..|+.+|..+++ .|++|+.+|.++..-..++.|..|.+. ..+.+.+.+..+..++.+..
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~--~G~~V~g~D~~~~~v~~l~~g~~p~~E--~~l~~ll~~~~~~~~l~~t~-------- 68 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAE--KGHQVIGVDIDEEKVEALNNGELPIYE--PGLDELLKENVSAGRLRATT-------- 68 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHH--TTSEEEEE-S-HHHHHHHHTTSSSS-C--TTHHHHHHHHHHTTSEEEES--------
T ss_pred CEEEEECCCcchHHHHHHHHh--CCCEEEEEeCChHHHHHHhhccccccc--cchhhhhccccccccchhhh--------
Confidence 479999999999999999999 999999999876543344555534331 12333334444333332211
Q ss_pred eecccccccCEEEEeeCCC
Q psy4525 94 SLGDLTNAYHAVVLTYGAD 112 (388)
Q Consensus 94 ~~~~~~~~yd~lvlAtG~~ 112 (388)
.....-..+|.++||.+..
T Consensus 69 ~~~~ai~~adv~~I~VpTP 87 (185)
T PF03721_consen 69 DIEEAIKDADVVFICVPTP 87 (185)
T ss_dssp EHHHHHHH-SEEEE----E
T ss_pred hhhhhhhccceEEEecCCC
Confidence 1111123689999999843
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.14 Score=41.78 Aligned_cols=34 Identities=18% Similarity=0.239 Sum_probs=31.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCc-EEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQST-VDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~-v~lie~~ 47 (388)
..++++|||+|-+|-.++.+|.. .|.+ ++++.|.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~--~g~~~i~i~nRt 45 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAA--LGAKEITIVNRT 45 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHH--TTSSEEEEEESS
T ss_pred CCCEEEEECCHHHHHHHHHHHHH--cCCCEEEEEECC
Confidence 56899999999999999999999 7876 9999986
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >KOG3851|consensus | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.032 Score=51.42 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=26.8
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecC
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRG 206 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~ 206 (388)
-+|+|||||.-|+-+|..+. ++.+..+|-++...+
T Consensus 40 ~kvLVvGGGsgGi~~A~k~~-------------------rkl~~g~vgIvep~e 74 (446)
T KOG3851|consen 40 FKVLVVGGGSGGIGMAAKFY-------------------RKLGSGSVGIVEPAE 74 (446)
T ss_pred eEEEEEcCCcchhHHHHHHH-------------------hhcCCCceEEecchh
Confidence 47999999999999999765 234445788887654
|
|
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.62 E-value=0.12 Score=45.27 Aligned_cols=34 Identities=24% Similarity=0.200 Sum_probs=30.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
..++|+|||||..|...+..|.+ .|.+|+++++.
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~--~ga~V~VIs~~ 42 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLK--YGAHIVVISPE 42 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEcCC
Confidence 46899999999999999999999 89999999854
|
|
| >KOG2404|consensus | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.27 Score=45.51 Aligned_cols=48 Identities=10% Similarity=0.270 Sum_probs=38.2
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEcccc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
...+++..++.+++|.. .+|+|.+++..+. .++...+.+|.||+|+|-
T Consensus 157 pe~~ki~~nskvv~il~-n~gkVsgVeymd~----sgek~~~~~~~VVlatGG 204 (477)
T KOG2404|consen 157 PELVKILLNSKVVDILR-NNGKVSGVEYMDA----SGEKSKIIGDAVVLATGG 204 (477)
T ss_pred hHHHhhhhcceeeeeec-CCCeEEEEEEEcC----CCCccceecCceEEecCC
Confidence 45689999999999995 4699999988653 456667888988888873
|
|
| >PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.34 Score=49.63 Aligned_cols=48 Identities=10% Similarity=-0.020 Sum_probs=36.7
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIG 321 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G 321 (388)
..||++++++.++++..+ +|+|.++...+. .++....+.++.||+|||
T Consensus 148 ~~gv~i~~~~~~~~Li~~-~g~v~Gv~~~~~---~~g~~~~i~AkaVVLATG 195 (566)
T PRK06452 148 GLNVDFYNEWFSLDLVTD-NKKVVGIVAMQM---KTLTPFFFKTKAVVLATG 195 (566)
T ss_pred hCCCEEEeCcEEEEEEEE-CCEEEEEEEEEC---CCCeEEEEEeCeEEECCC
Confidence 458999999999999874 588988876431 123345789999999999
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.12 Score=44.54 Aligned_cols=32 Identities=25% Similarity=0.503 Sum_probs=27.6
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
+|.|||+|..|...|..+.. .|++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~--~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFAR--AGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHH--TTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHh--CCCcEEEEECCh
Confidence 58999999999999999999 899999999863
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PTZ00367 squalene epoxidase; Provisional | Back alignment and domain information |
|---|
Probab=93.46 E-value=1.1 Score=45.78 Aligned_cols=34 Identities=18% Similarity=0.148 Sum_probs=27.9
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecC
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRG 206 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~ 206 (388)
.-+|+|||||..|+-+|..|+ +.| .+|++++|..
T Consensus 33 ~~dViIVGaGiaGlalA~aLa--------------------r~G-~~V~VlEr~~ 66 (567)
T PTZ00367 33 DYDVIIVGGSIAGPVLAKALS--------------------KQG-RKVLMLERDL 66 (567)
T ss_pred CccEEEECCCHHHHHHHHHHH--------------------hcC-CEEEEEcccc
Confidence 357999999999999999876 344 4799999875
|
|
| >PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase | Back alignment and domain information |
|---|
Probab=93.45 E-value=1.5 Score=45.59 Aligned_cols=35 Identities=11% Similarity=0.021 Sum_probs=28.9
Q ss_pred CCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecC
Q psy4525 151 DCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRG 206 (388)
Q Consensus 151 ~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~ 206 (388)
+..+|+|||||..|+=+|..|. +.|. +|++++|.+
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~--------------------r~Gi-~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAK--------------------KKGF-DVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHH--------------------hcCC-eEEEEeccc
Confidence 4578999999999999999876 3554 699999865
|
|
| >PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.53 Score=48.95 Aligned_cols=49 Identities=16% Similarity=0.106 Sum_probs=37.2
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEcccc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
+.||++++++.++++..+ +++|.++...+. .++....+.|+.||+|||-
T Consensus 182 ~~gV~i~~~t~v~~Li~d-~g~V~GV~~~~~---~~g~~~~i~AkaVVLATGG 230 (640)
T PRK07573 182 AGTVKMYTRTEMLDLVVV-DGRARGIVARNL---VTGEIERHTADAVVLATGG 230 (640)
T ss_pred hcCCEEEeceEEEEEEEe-CCEEEEEEEEEC---CCCcEEEEECCEEEECCCC
Confidence 468999999999998764 478888876431 1233457899999999995
|
|
| >KOG3855|consensus | Back alignment and domain information |
|---|
Probab=93.34 E-value=0.098 Score=49.96 Aligned_cols=35 Identities=29% Similarity=0.339 Sum_probs=29.7
Q ss_pred CCcEEEECccHHHHHHHHHHHhhC--CCCcEEEEcCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLL--PQSTVDIYEKL 47 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~--~g~~v~lie~~ 47 (388)
.++|+|+||||.|++.|..|.... ...++.++|..
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~ 72 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAG 72 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecc
Confidence 689999999999999999998642 34689999977
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 388 | ||||
| 1cjc_A | 460 | Structure Of Adrenodoxin Reductase Of Mitochondrial | 2e-92 | ||
| 1cjc_A | 460 | Structure Of Adrenodoxin Reductase Of Mitochondrial | 2e-04 | ||
| 1lqt_A | 456 | A Covalent Modification Of Nadp+ Revealed By The At | 2e-58 | ||
| 2c7g_A | 456 | Fpra From Mycobacterium Tuberculosis: His57gln Muta | 1e-57 | ||
| 2vdc_G | 456 | The 9.5 A Resolution Structure Of Glutamate Synthas | 1e-04 |
| >pdb|1CJC|A Chain A, Structure Of Adrenodoxin Reductase Of Mitochondrial P450 Systems Length = 460 | Back alignment and structure |
|
| >pdb|1CJC|A Chain A, Structure Of Adrenodoxin Reductase Of Mitochondrial P450 Systems Length = 460 | Back alignment and structure |
|
| >pdb|1LQT|A Chain A, A Covalent Modification Of Nadp+ Revealed By The Atomic Resolution Structure Of Fpra, A Mycobacterium Tuberculosis Oxidoreductase Length = 456 | Back alignment and structure |
|
| >pdb|2C7G|A Chain A, Fpra From Mycobacterium Tuberculosis: His57gln Mutant Length = 456 | Back alignment and structure |
|
| >pdb|2VDC|G Chain G, The 9.5 A Resolution Structure Of Glutamate Synthase From Cryo-Electron Microscopy And Its Oligomerization Behavior In Solution: Functional Implications. Length = 456 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 388 | |||
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 1e-128 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 1e-119 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 5e-18 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 2e-17 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-06 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 4e-05 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 2e-04 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 4e-04 | |
| 3ayj_A | 721 | Pro-enzyme of L-phenylalanine oxidase; amino acid | 6e-04 |
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* Length = 460 | Back alignment and structure |
|---|
Score = 375 bits (964), Expect = e-128
Identities = 187/454 (41%), Positives = 253/454 (55%), Gaps = 80/454 (17%)
Query: 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFT 73
P +C+VGSGPAGFY AQ +LK ++ VDIYEK VPFGLVR+GVAPDHPEVKNVINTFT
Sbjct: 7 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFT 66
Query: 74 KTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSF 133
+T + R FYGN+ +G+D+++ +L +AYHAVVL+YGA++ + L+IPGE+ + SAR+F
Sbjct: 67 QTARSDRCAFYGNVEVGRDVTVQELQDAYHAVVLSYGAEDHQALDIPGEELPGVFSARAF 126
Query: 134 VGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLST 193
VGWYNGLPE+ L L C+ A ILGQGNVA+DVARILL+P D L+ TDITE +L L
Sbjct: 127 VGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQ 186
Query: 194 SRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLT 253
SR+K+V +VGRRG LQVAFTIKE REM +LP + + G+ + ARPRKRL
Sbjct: 187 SRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLM 246
Query: 254 ELILKTS------NPDESKSNCSKYFRPIFLRSPTEFKLNDNGA-ITGINFA-------- 298
EL+L+T+ +++ S+ + F RSP + + +G GI A
Sbjct: 247 ELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIG 306
Query: 299 -NQQALVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSCT-------VIPKEGVPVVT 350
+A+ T D E +P G+ SIGY+SR +D +PF+ K V+ G+
Sbjct: 307 EATRAVPTGDVEDLPCGLVLSSIGYKSRPIDPSVPFDPKLGVVPNMEGRVVDVPGLYCSG 366
Query: 351 W-------------------------------------EGWKAIDKEETER--------- 364
W G I R
Sbjct: 367 WVKRGPTGVITTTMTDSFLTGQILLQDLKAGHLPSGPRPGSAFIKALLDSRGVWPVSFSD 426
Query: 365 -----------GKLKGKPREKIISIEEMISVSGN 387
G+ GKPREK++ +EM+ + G+
Sbjct: 427 WEKLDAEEVSRGQASGKPREKLLDPQEMLRLLGH 460
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* Length = 456 | Back alignment and structure |
|---|
Score = 353 bits (908), Expect = e-119
Identities = 137/452 (30%), Positives = 205/452 (45%), Gaps = 85/452 (18%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQST-----VDIYEKLPVPFGLVRYGVAPDHPEVKNVIN 70
+ IVGSGP+ F+ A +LK + VD+ E LP P+GLVR GVAPDHP++K++
Sbjct: 6 IAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISK 65
Query: 71 TFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISA 130
F KT ++PR F+GN+ +G+ + G+L+ Y AV+ GA +D+ LNIPGED I+A
Sbjct: 66 QFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGAQSDRMLNIPGEDLPGSIAA 125
Query: 131 RSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEK 190
FVGWYN P + L A ++G GNVA+DVARILL+ D L TDI +H+LE
Sbjct: 126 VDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALES 185
Query: 191 LSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVH-EASATLARPR 249
L I+ V +VGRRG LQ AFT E RE+ L V V +L G+ E +A + +
Sbjct: 186 LRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGITDEDAAAVGKVC 245
Query: 250 KRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGA--------ITGINFANQQ 301
K+ +++ ++ + + FR FL SP E K +
Sbjct: 246 KQNIKVLRGYADREPRPGHRRMVFR--FLTSPIEIKGKRKVERIVLGRNELVSDGSGRVA 303
Query: 302 ALVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSCT-------VIPKEGVPVVTW--- 351
A T + E +P+ + RS+GY+ +PF+++S T + VV W
Sbjct: 304 AKDTGEREELPAQLVVRSVGYRGVPTP-GLPFDDQSGTIPNVGGRINGSPNEYVVGWIKR 362
Query: 352 --------------------------------------EGWKAIDKEETERG-------- 365
+ + R
Sbjct: 363 GPTGVIGTNKKDAQDTVDTLIKNLGNAKEGAECKSFPEDHADQVADWLAARQPKLVTSAH 422
Query: 366 ------------KLKGKPREKIISIEEMISVS 385
+ G+PR K+ S+ E++ +
Sbjct: 423 WQVIDAFERAAGEPHGRPRVKLASLAELLRIG 454
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} Length = 456 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 5e-18
Identities = 45/169 (26%), Positives = 76/169 (44%), Gaps = 27/169 (15%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQS--TVDIYEKLPVPFGLVRYGVAPDHPEV---KNVI- 69
V ++G+GPAG A++ L V +Y++ GL+ YG+ P K+V+
Sbjct: 125 VGVIGAGPAGLAAAEE----LRAKGYEVHVYDRYDRMGGLLVYGI----PGFKLEKSVVE 176
Query: 70 ---NTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKN 126
G V ++ N +G+D SL +L + AV++ G + + PG N
Sbjct: 177 RRVKLLADAG----VIYHPNFEVGRDASLPELRRKHVAVLVATGVYKARDIKAPGSGLGN 232
Query: 127 IISARSFVGWYN----GLPEDASLDLSLDCE--EATILGQGNVAMDVAR 169
I++A ++ N G +A + SL+ +LG G+ AMD R
Sbjct: 233 IVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTAMDCVR 281
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* Length = 1025 | Back alignment and structure |
|---|
Score = 83.3 bits (206), Expect = 2e-17
Identities = 39/175 (22%), Positives = 61/175 (34%), Gaps = 36/175 (20%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPE---VKNV---- 68
+ ++G+GPA CA L L S + I+EK GL + P+ +V
Sbjct: 190 IALLGAGPASISCAS-FLARLGYSDITIFEKQEYVGGLSTSEI----PQFRLPYDVVNFE 244
Query: 69 INTFTKTGDNPRVNFYGNICLGQ-DISLGDLTN-AYHAVVLTYGADNDKKLNIPG--EDG 124
I G V L + +I+L L Y A + G K +I
Sbjct: 245 IELMKDLG----VKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQD 300
Query: 125 KNIISARSFVGWYNGLPEDASLDLSLDCEEAT----------ILGQGNVAMDVAR 169
+ +++ F LP A + C + +LG G+ A D A
Sbjct: 301 QGFYTSKDF------LPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGDTAFDCAT 349
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 2e-06
Identities = 45/316 (14%), Positives = 92/316 (29%), Gaps = 109/316 (34%)
Query: 1 MMKRVYSTISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAP 60
++ + +L+P ++ G G + + L + + K+ + +
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLG--SGKTWVALDVCLSYKVQCKMD-------FKI-- 184
Query: 61 DHPEVKNVINTFTKTGDNPRVNFYGNICLGQDIS----LGDLTNAYHAVVLTYGADNDKK 116
F+ + L S L L + + + + +D
Sbjct: 185 ----------------------FW--LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHS 220
Query: 117 LNIP--GEDGK----NIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDV-AR 169
NI + ++ ++ + N L L L + + A A ++ +
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYE---NCL-----LVLL-NVQNAKAWN----AFNLSCK 267
Query: 170 ILL-----SPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREM---- 220
ILL D L + T SL+ S + T E + +
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMT-----------------LTPDEVKSLLLKY 310
Query: 221 -----TKLPHVQTVFRNEQLCGV-----HEASATLARPR----KRLTELI---LKTSNPD 263
LP + + N + + + AT + +LT +I L P
Sbjct: 311 LDCRPQDLPR-EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369
Query: 264 ESKSNCSKYFRP--IF 277
E + K F +F
Sbjct: 370 EYR----KMFDRLSVF 381
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 2e-06
Identities = 41/351 (11%), Positives = 93/351 (26%), Gaps = 106/351 (30%)
Query: 91 QDISLGDLTNAYHAVVLTYGADNDKKLNIPGED-------------GKNIISARSFVG-- 135
+D+ D+ + +L+ + D + + ++ FV
Sbjct: 36 KDVQ--DMPKS----ILS-KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQK--FVEEV 86
Query: 136 ------W----YNGLPEDASLDLSLDCEEATILGQGNVA---MDVARILLSPVDQLKSTD 182
+ S+ + E+ L N +V+R+ P +L+
Sbjct: 87 LRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL--QPYLKLRQ-- 142
Query: 183 ITEHSLEKLSTSRI----------KSVNLVG---RRGALQVAFTIKEF--------REMT 221
+L +L ++ K+ + +Q K F T
Sbjct: 143 ----ALLELRPAKNVLIDGVLGSGKTW-VALDVCLSYKVQCKMDFKIFWLNLKNCNSPET 197
Query: 222 KLPHVQTVFRN--EQLCGVHEASATLARP----RKRLTELILKTSNP-------DESKSN 268
L +Q + + S+ + + L L+ + +
Sbjct: 198 VLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAK 257
Query: 269 CSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTE--LIPSGIAFRSIGYQSRC 326
F L ++ A + + L P +
Sbjct: 258 AWNAFN---LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD----EVKSLLLKY 310
Query: 327 VD---SDIPFNEKSCTVIP----------KEGVPVVTWEGWKAIDKEETER 364
+D D+P + T P ++G+ TW+ WK ++ ++
Sbjct: 311 LDCRPQDLP--REVLTTNPRRLSIIAESIRDGL--ATWDNWKHVNCDKLTT 357
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 Length = 671 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 4e-05
Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 11/118 (9%)
Query: 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY-GVAPDHPEVKNVINTFT 73
N+ +VG+GPAG A V +++ G P E + +
Sbjct: 375 NLAVVGAGPAGLAFA-INAAAR-GHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYR 432
Query: 74 KTGDNPRVNFYG-NICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISA 130
+ + G + L ++ L A+ +L G + I G D ++S
Sbjct: 433 R-----MIEVTGVTLKLNHTVTADQLQ-AFDETILASGI-VPRTPPIDGIDHPKVLSY 483
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP: c.3.1.6 PDB: 3fpz_A* Length = 326 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 2e-04
Identities = 15/38 (39%), Positives = 18/38 (47%)
Query: 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52
+V IVG+G +G A I K P V I E P G
Sbjct: 67 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGG 104
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} Length = 344 | Back alignment and structure |
|---|
Score = 41.3 bits (96), Expect = 4e-04
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 1 MMKRVYSTISQ-LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52
M +R ++ + + ++ IVG+G G A + L P + I E P G
Sbjct: 66 MTRRYFADLDAHAETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGG 118
|
| >3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* Length = 721 | Back alignment and structure |
|---|
Score = 41.0 bits (94), Expect = 6e-04
Identities = 34/182 (18%), Positives = 50/182 (27%), Gaps = 12/182 (6%)
Query: 14 PNVCIVGSGPAGFYCAQQILKLLPQS------TVDIYEKLPVPFGLVRYGVAPDHPEVKN 67
+ IVG G G ++ +L V IYE P F R G+
Sbjct: 57 YRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRPGIKAIKVRGLK 116
Query: 68 VINTFTKTGDNPRVNFYGNIC-LGQ-DISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGK 125
N I +G ++A A K PG+
Sbjct: 117 AGRVSAALVHNGDPASGDTIYEVGAMRFPEIAGLTWHYASAAFGDAAPIKVFPNPGKVPT 176
Query: 126 NIISARSFVGWYNGLPEDA----SLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKST 181
+ + P+D S L + A L +VA ++ VD K
Sbjct: 177 EFVFGNRVDRYVGSDPKDWEDPDSPTLKVLGVVAGGLVGNPQGENVAMYPIANVDPAKIA 236
Query: 182 DI 183
I
Sbjct: 237 AI 238
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 388 | |||
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 100.0 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 100.0 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 99.97 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 99.95 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 99.94 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 99.94 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 99.94 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 99.94 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 99.94 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 99.94 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 99.93 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 99.93 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 99.93 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 99.93 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 99.93 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 99.93 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 99.93 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 99.93 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 99.93 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 99.93 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 99.93 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 99.93 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 99.93 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 99.93 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 99.93 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 99.93 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 99.93 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 99.93 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 99.93 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 99.92 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 99.92 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 99.92 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 99.92 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 99.92 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 99.92 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 99.92 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 99.92 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 99.92 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 99.92 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 99.92 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 99.92 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 99.92 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 99.92 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 99.92 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 99.92 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 99.92 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 99.92 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 99.92 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 99.92 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 99.91 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 99.91 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 99.91 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 99.91 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 99.91 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 99.91 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 99.91 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 99.91 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 99.91 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 99.91 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 99.91 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 99.91 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 99.91 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 99.91 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 99.91 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 99.91 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 99.91 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 99.91 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 99.91 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 99.91 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 99.91 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 99.91 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 99.9 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 99.9 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 99.9 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 99.9 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 99.9 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 99.9 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 99.9 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 99.9 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 99.9 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 99.89 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 99.88 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 99.88 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 99.88 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 99.87 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 99.87 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 99.86 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 99.83 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 99.83 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 99.81 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 99.8 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 99.78 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 99.77 | |
| 3fpz_A | 326 | Thiazole biosynthetic enzyme; FAD, mitochondrion, | 99.2 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 98.9 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 98.89 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 98.85 | |
| 2ywl_A | 180 | Thioredoxin reductase related protein; uncharacter | 98.82 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 98.71 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 98.7 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 98.68 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 98.67 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 98.62 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.6 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 98.59 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 98.54 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 98.49 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 98.46 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 98.45 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 98.41 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 98.38 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 98.38 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 98.35 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 98.33 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 98.31 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 98.3 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 98.29 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 98.28 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 98.28 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 98.27 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 98.27 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 98.27 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 98.27 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 98.23 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 98.22 | |
| 1nhp_A | 447 | NADH peroxidase; oxidoreductase (H2O2(A)); HET: FA | 98.22 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 98.22 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 98.2 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 98.19 | |
| 1xhc_A | 367 | NADH oxidase /nitrite reductase; southe collaborat | 98.19 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 98.18 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 98.17 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 98.17 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 98.17 | |
| 2yqu_A | 455 | 2-oxoglutarate dehydrogenase E3 component; lipoami | 98.16 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 98.15 | |
| 2v3a_A | 384 | Rubredoxin reductase; alkane degradation, NADH oxi | 98.15 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 98.14 | |
| 2gqw_A | 408 | Ferredoxin reductase; flavoprotein, oxidoreductase | 98.14 | |
| 2eq6_A | 464 | Pyruvate dehydrogenase complex, dihydrolipoamide d | 98.13 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 98.13 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 98.11 | |
| 2bc0_A | 490 | NADH oxidase; flavoprotein, pyridine nucleotide di | 98.1 | |
| 4b1b_A | 542 | TRXR, thioredoxin reductase; oxidoreductase, FAD, | 98.1 | |
| 2bry_A | 497 | NEDD9 interacting protein with calponin homology a | 98.1 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 98.09 | |
| 3k7m_X | 431 | 6-hydroxy-L-nicotine oxidase; enantiomeric substra | 98.06 | |
| 1lvl_A | 458 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 98.06 | |
| 4eqs_A | 437 | Coenzyme A disulfide reductase; oxidoreductase; HE | 98.04 | |
| 3klj_A | 385 | NAD(FAD)-dependent dehydrogenase, NIRB-family (N- | 98.03 | |
| 1ebd_A | 455 | E3BD, dihydrolipoamide dehydrogenase; redox-active | 98.03 | |
| 1zk7_A | 467 | HGII, reductase, mercuric reductase; mercuric ION | 98.02 | |
| 1v59_A | 478 | Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog | 98.02 | |
| 2e1m_A | 376 | L-glutamate oxidase; L-amino acid oxidase, FAD, L- | 98.02 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 98.01 | |
| 3oc4_A | 452 | Oxidoreductase, pyridine nucleotide-disulfide FAM; | 98.01 | |
| 3lxd_A | 415 | FAD-dependent pyridine nucleotide-disulphide oxido | 98.0 | |
| 1ojt_A | 482 | Surface protein; redox-active center, glycolysis, | 98.0 | |
| 2r9z_A | 463 | Glutathione amide reductase; NAD, FAD, substrate s | 97.99 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 97.99 | |
| 2bcg_G | 453 | Secretory pathway GDP dissociation inhibitor; RABG | 97.99 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 97.99 | |
| 3fg2_P | 404 | Putative rubredoxin reductase; ferredoxin reductas | 97.99 | |
| 3cgb_A | 480 | Pyridine nucleotide-disulfide oxidoreductase, CLA; | 97.98 | |
| 3ef6_A | 410 | Toluene 1,2-dioxygenase system ferredoxin--NAD(+) | 97.98 | |
| 1ges_A | 450 | Glutathione reductase; oxidoreductase(flavoenzyme) | 97.98 | |
| 1s3e_A | 520 | Amine oxidase [flavin-containing] B; human monoami | 97.97 | |
| 2jae_A | 489 | L-amino acid oxidase; oxidoreductase, dimerisation | 97.95 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 97.95 | |
| 2cul_A | 232 | Glucose-inhibited division protein A-related PROT | 97.95 | |
| 1onf_A | 500 | GR, grase, glutathione reductase; oxidoreductase; | 97.94 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 97.93 | |
| 1v0j_A | 399 | UDP-galactopyranose mutase; flavoprotein, isomeras | 97.92 | |
| 1zmd_A | 474 | Dihydrolipoyl dehydrogenase; lipoamide dehydrogena | 97.9 | |
| 2cdu_A | 452 | NADPH oxidase; flavoenzyme, oxidoreductase; HET: F | 97.9 | |
| 2a8x_A | 464 | Dihydrolipoyl dehydrogenase, E3 component of alpha | 97.89 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 97.88 | |
| 3hdq_A | 397 | UDP-galactopyranose mutase; substrate and inhibito | 97.88 | |
| 1xdi_A | 499 | RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun | 97.87 | |
| 2wpf_A | 495 | Trypanothione reductase; oxidoreductase, trypanoso | 97.87 | |
| 1q1r_A | 431 | Putidaredoxin reductase; glutathione reductase fol | 97.87 | |
| 2hqm_A | 479 | GR, grase, glutathione reductase; glutathione redu | 97.87 | |
| 3ics_A | 588 | Coenzyme A-disulfide reductase; pyridine nucleotid | 97.87 | |
| 1trb_A | 320 | Thioredoxin reductase; oxidoreductase(flavoenzyme) | 97.86 | |
| 2yg5_A | 453 | Putrescine oxidase; oxidoreductase, flavin; HET: F | 97.85 | |
| 1fec_A | 490 | Trypanothione reductase; redox-active center, oxid | 97.84 | |
| 2ivd_A | 478 | PPO, PPOX, protoporphyrinogen oxidase; porphyrin b | 97.84 | |
| 3urh_A | 491 | Dihydrolipoyl dehydrogenase; PSI-biology, structur | 97.84 | |
| 1sez_A | 504 | Protoporphyrinogen oxidase, mitochondrial; FAD-bin | 97.83 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 97.83 | |
| 3kd9_A | 449 | Coenzyme A disulfide reductase; PSI-II, NYSGXRC, o | 97.83 | |
| 3ic9_A | 492 | Dihydrolipoamide dehydrogenase; APC62701, colwelli | 97.83 | |
| 2qae_A | 468 | Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin | 97.82 | |
| 3dk9_A | 478 | Grase, GR, glutathione reductase; flavoenzyme, nic | 97.82 | |
| 3i6d_A | 470 | Protoporphyrinogen oxidase; protein-inhibitor comp | 97.82 | |
| 3h8l_A | 409 | NADH oxidase; membrane protein, complete form, ros | 97.8 | |
| 1mo9_A | 523 | ORF3; nucleotide binding motifs, nucleotide bindin | 97.8 | |
| 2vvm_A | 495 | Monoamine oxidase N; FAD, peroxisome, flavoprotein | 97.79 | |
| 3ntd_A | 565 | FAD-dependent pyridine nucleotide-disulphide oxido | 97.78 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 97.78 | |
| 3lad_A | 476 | Dihydrolipoamide dehydrogenase; oxidoreductase; HE | 97.78 | |
| 1dxl_A | 470 | Dihydrolipoamide dehydrogenase; oxidoreductase, mu | 97.78 | |
| 3iwa_A | 472 | FAD-dependent pyridine nucleotide-disulphide oxido | 97.77 | |
| 2bi7_A | 384 | UDP-galactopyranose mutase; FAD, flavoprotein, iso | 97.76 | |
| 4dsg_A | 484 | UDP-galactopyranose mutase; rossmann fold, flavin | 97.76 | |
| 1rp0_A | 284 | ARA6, thiazole biosynthetic enzyme; protein ligand | 97.75 | |
| 3hyw_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 97.75 | |
| 2zbw_A | 335 | Thioredoxin reductase; redox protein, oxidoreducta | 97.74 | |
| 1i8t_A | 367 | UDP-galactopyranose mutase; rossman fold, FAD, con | 97.74 | |
| 3lov_A | 475 | Protoporphyrinogen oxidase; structural genomics, J | 97.73 | |
| 4dna_A | 463 | Probable glutathione reductase; structural genomic | 97.72 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 97.72 | |
| 3d1c_A | 369 | Flavin-containing putative monooxygenase; NP_37310 | 97.72 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 97.72 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 97.71 | |
| 3o0h_A | 484 | Glutathione reductase; ssgcid, structur genomics, | 97.7 | |
| 3vrd_B | 401 | FCCB subunit, flavocytochrome C flavin subunit; su | 97.69 | |
| 1m6i_A | 493 | Programmed cell death protein 8; apoptosis, AIF, o | 97.65 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 97.65 | |
| 3nlc_A | 549 | Uncharacterized protein VP0956; FAD-binding protei | 97.64 | |
| 1d5t_A | 433 | Guanine nucleotide dissociation inhibitor; ultra-h | 97.64 | |
| 2oln_A | 397 | NIKD protein; flavoprotein, rossmann fold, oxidore | 97.63 | |
| 3qfa_A | 519 | Thioredoxin reductase 1, cytoplasmic; protein-prot | 97.62 | |
| 3lzw_A | 332 | Ferredoxin--NADP reductase 2; ferredoxin reductase | 97.6 | |
| 3dgh_A | 483 | TRXR-1, thioredoxin reductase 1, mitochondrial; ox | 97.59 | |
| 2z3y_A | 662 | Lysine-specific histone demethylase 1; chromatin, | 97.58 | |
| 3dgz_A | 488 | Thioredoxin reductase 2; oxidoreductase, rossmann, | 97.57 | |
| 3ab1_A | 360 | Ferredoxin--NADP reductase; oxidoreductase, electr | 97.55 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 97.55 | |
| 1c0p_A | 363 | D-amino acid oxidase; alpha-beta-alpha motif, flav | 97.55 | |
| 3s5w_A | 463 | L-ornithine 5-monooxygenase; class B flavin depend | 97.55 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 97.54 | |
| 3fbs_A | 297 | Oxidoreductase; structural genomics, PSI2, MCSG, p | 97.54 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 97.53 | |
| 2xag_A | 852 | Lysine-specific histone demethylase 1; amine oxida | 97.53 | |
| 1b37_A | 472 | Protein (polyamine oxidase); flavin-dependent amin | 97.53 | |
| 3f8d_A | 323 | Thioredoxin reductase (TRXB-3); redox protein, nuc | 97.53 | |
| 3sx6_A | 437 | Sulfide-quinone reductase, putative; sulfide:quino | 97.52 | |
| 3e1t_A | 512 | Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro | 97.5 | |
| 3h28_A | 430 | Sulfide-quinone reductase; monotopic membrane prot | 97.49 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 97.49 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 97.49 | |
| 4g6h_A | 502 | Rotenone-insensitive NADH-ubiquinone oxidoreducta | 97.49 | |
| 4a9w_A | 357 | Monooxygenase; baeyer-villiger, FAD, oxidoreductas | 97.49 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 97.48 | |
| 3v76_A | 417 | Flavoprotein; structural genomics, PSI-biology, NE | 97.47 | |
| 3cgv_A | 397 | Geranylgeranyl reductase related protein; NP_39399 | 97.47 | |
| 3itj_A | 338 | Thioredoxin reductase 1; disulfide B flavoprotein, | 97.47 | |
| 3p1w_A | 475 | Rabgdi protein; GDI RAB, malaria, structural genom | 97.42 | |
| 3nix_A | 421 | Flavoprotein/dehydrogenase; structural genomics, P | 97.42 | |
| 1vdc_A | 333 | NTR, NADPH dependent thioredoxin reductase; hypoth | 97.4 | |
| 2x8g_A | 598 | Thioredoxin glutathione reductase; redox-active ce | 97.4 | |
| 2vou_A | 397 | 2,6-dihydroxypyridine hydroxylase; oxidoreductase, | 97.39 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 97.39 | |
| 3gwf_A | 540 | Cyclohexanone monooxygenase; flavoprotein biocatal | 97.37 | |
| 2a87_A | 335 | TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL | 97.36 | |
| 2x3n_A | 399 | Probable FAD-dependent monooxygenase; oxidoreducta | 97.36 | |
| 2q0l_A | 311 | TRXR, thioredoxin reductase; bacterial thiredoxin | 97.36 | |
| 3atr_A | 453 | Conserved archaeal protein; saturating double bond | 97.35 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 97.35 | |
| 2q7v_A | 325 | Thioredoxin reductase; rossman fold, FAD, flavopro | 97.35 | |
| 3l8k_A | 466 | Dihydrolipoyl dehydrogenase; redox-active center, | 97.34 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 97.34 | |
| 3pl8_A | 623 | Pyranose 2-oxidase; substrate complex, H167A mutan | 97.33 | |
| 3alj_A | 379 | 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; | 97.33 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 97.33 | |
| 3r9u_A | 315 | Thioredoxin reductase; structural genomics, center | 97.32 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 97.32 | |
| 2xve_A | 464 | Flavin-containing monooxygenase; oxidoreductase; H | 97.32 | |
| 4fk1_A | 304 | Putative thioredoxin reductase; structural genomic | 97.31 | |
| 1fl2_A | 310 | Alkyl hydroperoxide reductase subunit F; reactive | 97.31 | |
| 4ap3_A | 549 | Steroid monooxygenase; oxidoreductase, baeyer-vill | 97.31 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 97.3 | |
| 2i0z_A | 447 | NAD(FAD)-utilizing dehydrogenases; structural geno | 97.29 | |
| 3g3e_A | 351 | D-amino-acid oxidase; FAD, flavoprotein, oxidoredu | 97.29 | |
| 3oz2_A | 397 | Digeranylgeranylglycerophospholipid reductase; str | 97.29 | |
| 4gut_A | 776 | Lysine-specific histone demethylase 1B; histone de | 97.26 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 97.26 | |
| 3axb_A | 448 | Putative oxidoreductase; dinucleotide-binding fold | 97.26 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 97.22 | |
| 2gqf_A | 401 | Hypothetical protein HI0933; structural genomics, | 97.21 | |
| 4at0_A | 510 | 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore | 97.19 | |
| 3cty_A | 319 | Thioredoxin reductase; FAD, oxidoreductase, flavin | 97.18 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 97.17 | |
| 1y0p_A | 571 | Fumarate reductase flavoprotein subunit; flavocyto | 97.16 | |
| 4a5l_A | 314 | Thioredoxin reductase; oxidoreductase, redox metab | 97.14 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 97.14 | |
| 2rgh_A | 571 | Alpha-glycerophosphate oxidase; flavoprotein oxida | 97.12 | |
| 3uox_A | 545 | Otemo; baeyer-villiger monooxygenase, oxidoreducta | 97.12 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 97.11 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 97.09 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 97.09 | |
| 2gmh_A | 584 | Electron transfer flavoprotein-ubiquinone oxidored | 97.06 | |
| 2gv8_A | 447 | Monooxygenase; FMO, FAD, NADPH, cofactor complex, | 97.06 | |
| 3ayj_A | 721 | Pro-enzyme of L-phenylalanine oxidase; amino acid | 97.06 | |
| 3rp8_A | 407 | Flavoprotein monooxygenase; FAD-binding protein, o | 97.05 | |
| 3ces_A | 651 | MNMG, tRNA uridine 5-carboxymethylaminomethyl modi | 97.05 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 97.04 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 97.03 | |
| 3dme_A | 369 | Conserved exported protein; structural genomics, P | 96.99 | |
| 1qo8_A | 566 | Flavocytochrome C3 fumarate reductase; oxidoreduct | 96.99 | |
| 2zxi_A | 637 | TRNA uridine 5-carboxymethylaminomethyl modificat | 96.99 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 96.96 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 96.95 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 96.95 | |
| 2xdo_A | 398 | TETX2 protein; tetracycline degradation, tigecycli | 96.94 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 96.94 | |
| 1d4d_A | 572 | Flavocytochrome C fumarate reductase; oxidoreducta | 96.93 | |
| 3i3l_A | 591 | Alkylhalidase CMLS; flavin-dependent halogenase, c | 96.91 | |
| 1w4x_A | 542 | Phenylacetone monooxygenase; baeyer-villiger, FAD; | 96.9 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 96.89 | |
| 3fmw_A | 570 | Oxygenase; mithramycin, baeyer-villiger, flavin bi | 96.87 | |
| 1jnr_A | 643 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 96.86 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 96.85 | |
| 3dje_A | 438 | Fructosyl amine: oxygen oxidoreductase; fructosyl- | 96.84 | |
| 4gcm_A | 312 | TRXR, thioredoxin reductase; FAD/NAD-linked reduct | 96.82 | |
| 2gag_B | 405 | Heterotetrameric sarcosine oxidase beta-subunit; f | 96.81 | |
| 1yvv_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 96.8 | |
| 2e4g_A | 550 | Tryptophan halogenase; flavin-binding, rebeccamyci | 96.79 | |
| 2aqj_A | 538 | Tryptophan halogenase, pRNA; flavin-dependent halo | 96.76 | |
| 1kdg_A | 546 | CDH, cellobiose dehydrogenase; GMC oxidoreductase, | 96.76 | |
| 1k0i_A | 394 | P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h | 96.76 | |
| 3t37_A | 526 | Probable dehydrogenase; BET alpha beta fold, ADP b | 96.72 | |
| 3jsk_A | 344 | Cypbp37 protein; octameric thiazole synthase, bios | 96.72 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 96.71 | |
| 2gjc_A | 326 | Thiazole biosynthetic enzyme, mitochondrial; gluta | 96.7 | |
| 4hb9_A | 412 | Similarities with probable monooxygenase; flavin, | 96.69 | |
| 2vdc_G | 456 | Glutamate synthase [NADPH] small chain; oxidoreduc | 96.69 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 96.65 | |
| 3ihg_A | 535 | RDME; flavoenzyme, anthracycline, polyketide biosy | 96.61 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 96.61 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 96.6 | |
| 1y56_B | 382 | Sarcosine oxidase; dehydrogenase, protein-protein | 96.56 | |
| 2qa2_A | 499 | CABE, polyketide oxygenase CABE; FAD, angucycline, | 96.56 | |
| 2jbv_A | 546 | Choline oxidase; alcohol oxidation, flavoenyzme ox | 96.54 | |
| 3c96_A | 410 | Flavin-containing monooxygenase; FAD, oxidoreducta | 96.54 | |
| 1ryi_A | 382 | Glycine oxidase; flavoprotein, protein-inhibitor c | 96.53 | |
| 2qa1_A | 500 | PGAE, polyketide oxygenase PGAE; FAD, angucycline, | 96.51 | |
| 2uzz_A | 372 | N-methyl-L-tryptophan oxidase; N-methyltryptophan | 96.44 | |
| 3nyc_A | 381 | D-arginine dehydrogenase; FAD, imino-arginine, oxi | 96.43 | |
| 3qj4_A | 342 | Renalase; FAD/NAD(P)-binding rossmann fold superfa | 96.42 | |
| 3cp8_A | 641 | TRNA uridine 5-carboxymethylaminomethyl modificati | 96.41 | |
| 3qvp_A | 583 | Glucose oxidase; oxidoreductase; HET: NAG BMA MAN | 96.34 | |
| 1y56_A | 493 | Hypothetical protein PH1363; dehydrogenase, protei | 96.26 | |
| 2pyx_A | 526 | Tryptophan halogenase; structural genomics, JOI fo | 96.23 | |
| 1n4w_A | 504 | CHOD, cholesterol oxidase; flavoenzyme, steroid me | 96.18 | |
| 2gag_A | 965 | Heterotetrameric sarcosine oxidase alpha-subunit; | 96.18 | |
| 1vg0_A | 650 | RAB proteins geranylgeranyltransferase component A | 96.17 | |
| 3q9t_A | 577 | Choline dehydrogenase and related flavoproteins; g | 96.17 | |
| 3da1_A | 561 | Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9 | 96.16 | |
| 2weu_A | 511 | Tryptophan 5-halogenase; regioselectivity, antifun | 96.15 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 96.15 | |
| 1lqt_A | 456 | FPRA; NADP+ derivative, oxidoreductase, structural | 96.14 | |
| 2gf3_A | 389 | MSOX, monomeric sarcosine oxidase; flavoprotein ox | 96.07 | |
| 1cjc_A | 460 | Protein (adrenodoxin reductase); flavoenzyme, MAD | 96.05 | |
| 1coy_A | 507 | Cholesterol oxidase; oxidoreductase(oxygen recepto | 96.01 | |
| 2dkh_A | 639 | 3-hydroxybenzoate hydroxylase; flavoprotein, monoo | 96.0 | |
| 2e5v_A | 472 | L-aspartate oxidase; archaea, oxidoreductase; HET: | 95.98 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 95.93 | |
| 4b63_A | 501 | L-ornithine N5 monooxygenase; oxidoreductase, side | 95.9 | |
| 1ju2_A | 536 | HydroxynitrIle lyase; flavin, GMC oxidoreductase, | 95.86 | |
| 1pj5_A | 830 | N,N-dimethylglycine oxidase; channelling, FAD bind | 95.83 | |
| 3fim_B | 566 | ARYL-alcohol oxidase; AAO, lignin degradation, oxi | 95.74 | |
| 2wdq_A | 588 | Succinate dehydrogenase flavoprotein subunit; succ | 95.7 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 95.66 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 95.61 | |
| 2r0c_A | 549 | REBC; flavin adenine dinucleotide, monooxygenase, | 95.47 | |
| 1chu_A | 540 | Protein (L-aspartate oxidase); flavoenzyme, NAD bi | 95.45 | |
| 1kf6_A | 602 | Fumarate reductase flavoprotein; respiration, fuma | 95.4 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 95.33 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 95.31 | |
| 1gpe_A | 587 | Protein (glucose oxidase); oxidoreductase(flavopro | 95.3 | |
| 3c4n_A | 405 | Uncharacterized protein DR_0571; alpha-beta protei | 95.12 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 95.07 | |
| 2h88_A | 621 | Succinate dehydrogenase flavoprotein subunit; comp | 95.05 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 94.93 | |
| 2qcu_A | 501 | Aerobic glycerol-3-phosphate dehydrogenase; glycer | 94.93 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 94.91 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 94.78 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 94.36 | |
| 3gyx_A | 662 | Adenylylsulfate reductase; oxidoreductase; HET: FA | 94.09 | |
| 2bs2_A | 660 | Quinol-fumarate reductase flavoprotein subunit A; | 94.02 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 93.95 | |
| 1pn0_A | 665 | Phenol 2-monooxygenase; two dimers, TLS refinement | 93.95 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 93.84 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 93.71 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 93.64 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 93.57 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 93.07 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 93.04 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 93.04 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 92.6 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 92.5 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 92.4 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 92.28 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 92.04 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 91.84 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 91.57 | |
| 4ffl_A | 363 | PYLC; amino acid, biosynthesis of pyrrolysine, iso | 91.53 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 91.5 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 91.35 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 91.35 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 91.32 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 91.31 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 91.24 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 91.21 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 91.13 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 91.04 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 90.92 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 90.84 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 90.8 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 90.73 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 90.58 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 90.53 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 90.37 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 90.33 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 90.31 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 90.3 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 90.26 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 90.2 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 90.08 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 90.05 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 89.93 | |
| 4gde_A | 513 | UDP-galactopyranose mutase; flavin adenine dinucle | 89.81 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 89.72 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 89.56 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 89.51 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 89.48 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 89.39 | |
| 3nks_A | 477 | Protoporphyrinogen oxidase; FAD containing protein | 89.37 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 89.3 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 89.25 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 89.22 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 89.14 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 89.13 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 89.11 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 89.09 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 89.04 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 89.03 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 89.03 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 89.02 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 89.02 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 88.96 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 88.96 | |
| 3nrn_A | 421 | Uncharacterized protein PF1083; alpha-beta protein | 88.8 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 88.76 | |
| 2iid_A | 498 | L-amino-acid oxidase; flavoenzyme, FAD binding dom | 88.73 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 88.69 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 88.61 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 88.58 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 88.57 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 88.43 | |
| 3ka7_A | 425 | Oxidoreductase; structural genomics, PSI-2, protei | 88.41 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 88.36 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 88.29 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 88.28 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 88.13 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 88.11 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 88.09 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 88.01 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 87.92 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 87.75 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 87.7 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 87.52 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 87.43 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 87.4 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 87.39 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 87.37 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 87.37 | |
| 3ihm_A | 430 | Styrene monooxygenase A; rossman fold, anti-parall | 87.34 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 87.32 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 87.31 | |
| 3c4a_A | 381 | Probable tryptophan hydroxylase VIOD; alpha-beta p | 87.3 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 87.29 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 87.29 | |
| 2b9w_A | 424 | Putative aminooxidase; isomerase, conjugated linol | 87.27 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 87.23 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 87.22 | |
| 3nkl_A | 141 | UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo | 87.1 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 87.07 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 87.02 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 87.02 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 86.99 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 86.91 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 86.82 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 86.79 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 86.73 | |
| 3pl8_A | 623 | Pyranose 2-oxidase; substrate complex, H167A mutan | 86.7 | |
| 1rsg_A | 516 | FMS1 protein; FAD binding motif, oxidoreductase; H | 86.7 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 86.66 | |
| 3g5s_A | 443 | Methylenetetrahydrofolate--tRNA-(uracil-5-)- methy | 86.65 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 86.64 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 86.63 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 86.63 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 86.62 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 86.58 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 86.57 | |
| 3k5i_A | 403 | Phosphoribosyl-aminoimidazole carboxylase; purine | 86.46 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 86.41 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 86.41 |
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-50 Score=396.56 Aligned_cols=375 Identities=51% Similarity=0.877 Sum_probs=300.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
..+++|+||||||||+++|..|++..++.+|+|||+.+.+||.|++++.|.++..+++..++.+++++.+++++.++.++
T Consensus 4 ~~~~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 83 (460)
T 1cjc_A 4 EQTPQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVG 83 (460)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBT
T ss_pred CCCceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCceeecccCCCCccHHHHHHHHHHHHHhCCcEEEeeeEEe
Confidence 34689999999999999999999942339999999999999999999988888888888888899999999999887775
Q ss_pred EEeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHH
Q psy4525 91 QDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARI 170 (388)
Q Consensus 91 ~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~ 170 (388)
.+++..+....||+||+|||+.+++.+++||.+.++++++.++..+++.++++........+++|+|||+|++|+|+|..
T Consensus 84 ~~V~~~~~~~~~d~lVlAtGs~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~~~~~~~vvVIGgG~~g~e~A~~ 163 (460)
T 1cjc_A 84 RDVTVQELQDAYHAVVLSYGAEDHQALDIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARI 163 (460)
T ss_dssp TTBCHHHHHHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHH
T ss_pred eEEEeccceEEcCEEEEecCcCCCCCCCCCCCCCCcEEEHHHHHHHhhcCccccccccCCCCCEEEEECCCHHHHHHHHH
Confidence 44555444458999999999986567899999889999999999888887766543323368999999999999999999
Q ss_pred hccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhh
Q psy4525 171 LLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRK 250 (388)
Q Consensus 171 L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 250 (388)
|+...++|.+|||+.++++.+++.+.++|+++.|+++++.+|+++|+++|.++|.++..+++++++........+++..+
T Consensus 164 L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~~~~~ft~~el~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (460)
T 1cjc_A 164 LLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRK 243 (460)
T ss_dssp HHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHH
T ss_pred HhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCChHhhccCHHHHHHhhcCCCceeEechhhhcchhhhhhhccHHHH
Confidence 99999999999999999999999998899999999999999999999999999998888777765432222223455556
Q ss_pred HHHHHHHhhCCCC----C--CCCCCceeEEEEecCcceeeeeCCCC-ceeEEEEccCc---------cccCCceeEEecc
Q psy4525 251 RLTELILKTSNPD----E--SKSNCSKYFRPIFLRSPTEFKLNDNG-AITGINFANQQ---------ALVTEDTELIPSG 314 (388)
Q Consensus 251 ~~~~~~~~~~~~~----~--~~~~~~~gv~~~~~~~~~~i~~~~~~-~v~~v~~~~~~---------~~~~~~~~~l~~D 314 (388)
++.+.+.+.+... . ......+||.++++..++++..++++ ++.++++.... .+.+++.++++||
T Consensus 244 ~~~~~l~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~d 323 (460)
T 1cjc_A 244 RLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCG 323 (460)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHTCSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECS
T ss_pred HHHHHHHHHHHhccccccccCCCCCCceEEEECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCCceEEEEcC
Confidence 6666555443210 0 00012489999999999999875435 77777765311 1113445789999
Q ss_pred eEEEccccCCccCCCCC-cccCCCccc-------------------------------------------------c---
Q psy4525 315 IAFRSIGYQSRCVDSDI-PFNEKSCTV-------------------------------------------------I--- 341 (388)
Q Consensus 315 ~Vi~a~G~~p~~~~~~l-~~~~~~gi~-------------------------------------------------l--- 341 (388)
+||+|+|++|+++ .++ ++++++|++ +
T Consensus 324 ~Vi~a~G~~p~~l-~gl~~~d~~g~i~vn~~~rt~~~p~vya~Gd~~~g~~~~i~~a~~~g~~aa~~i~~~l~~~~~~~~ 402 (460)
T 1cjc_A 324 LVLSSIGYKSRPI-DPSVPFDPKLGVVPNMEGRVVDVPGLYCSGWVKRGPTGVITTTMTDSFLTGQILLQDLKAGHLPSG 402 (460)
T ss_dssp EEEECCCEECCCC-CTTSCCBTTTTBCCEETTEETTCTTEEECTHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHTCSCCS
T ss_pred EEEECCCCCCCCC-CCCcccccCCCeeECCCCcCcCCCCEEEEEeCCcCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCC
Confidence 9999999999986 478 888666654 1
Q ss_pred ------------CCCCCCeecchhhHHhHHHHHHccccCCCCccccCCHHHHHhhhc
Q psy4525 342 ------------PKEGVPVVTWEGWKAIDKEETERGKLKGKPREKIISIEEMISVSG 386 (388)
Q Consensus 342 ------------~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 386 (388)
..++..+++|++|++||++|+++|+..||+|.||++++|||++++
T Consensus 403 ~~~~~~~~~~~l~~~g~~~~~~~~w~~id~~e~~~g~~~g~~r~k~~~~~~m~~~~~ 459 (460)
T 1cjc_A 403 PRPGSAFIKALLDSRGVWPVSFSDWEKLDAEEVSRGQASGKPREKLLDPQEMLRLLG 459 (460)
T ss_dssp CCCTHHHHHHHHHHHTCCCBCHHHHHHHHHHHHHHHHHHTSSCCCCCCHHHHHHHTT
T ss_pred CCCchhHHHHHHHHcCCCeecHHHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHhc
Confidence 123556789999999999999999999999999999999999876
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=392.36 Aligned_cols=368 Identities=38% Similarity=0.627 Sum_probs=298.0
Q ss_pred CCcEEEECccHHHHHHHHHHHh-hCC----CCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILK-LLP----QSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNI 87 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~-~~~----g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~ 87 (388)
+++|+||||||||+++|..|++ ..+ +.+|+|||+.+.+||.|+|++.|.+...+++..++.+++.+.+++++.++
T Consensus 3 ~~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~~gv~p~~~~~~~~~~~~~~~~~~~~v~~~~~v 82 (456)
T 1lqt_A 3 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV 82 (456)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred CCEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccccccCCCCCCHHHHHHHHHHHHhcCCCEEEeeE
Confidence 5799999999999999999988 534 89999999999999999999989888888888889899999999998886
Q ss_pred EEEEEeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCc-cccCcCCCCCeEEEEcCChHHHH
Q psy4525 88 CLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPED-ASLDLSLDCEEATILGQGNVAMD 166 (388)
Q Consensus 88 ~v~~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~-~~~~~~~~~~~vvVIGgG~sg~e 166 (388)
.++.++++++....||+||+|||+.+++.+++||.+.++++++.++..++++++++ .... ...+++|+|||+|++|+|
T Consensus 83 ~v~~~v~~~~~~~~~d~lViAtG~~~~~~~~ipG~~~~gv~~~~~~~~~~~~~~d~~~~~~-~~~~~~vvVIG~G~~g~e 161 (456)
T 1lqt_A 83 VVGEHVQPGELSERYDAVIYAVGAQSDRMLNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSP-DLSGARAVVIGNGNVALD 161 (456)
T ss_dssp CBTTTBCHHHHHHHSSEEEECCCCCEECCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCC-CCCSSEEEEECCSHHHHH
T ss_pred EECCEEEECCCeEeCCEEEEeeCCCCCCCCCCCCCCCCCcEEHHHHHhhhhcCcccccchh-hcCCCEEEEECCCHHHHH
Confidence 65444455444458999999999974467899998888999999999999888776 3222 346899999999999999
Q ss_pred HHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccc-cchhhhccc
Q psy4525 167 VARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLC-GVHEASATL 245 (388)
Q Consensus 167 ~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~-~~~~~~~~l 245 (388)
+|..|+...++|..+|++.+.++.+++.+.++|+++.|+++++..|+++|+++|.++|+++..++++++. ........+
T Consensus 162 ~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~~~~~f~~~elrel~~lp~~~~~~~~~~~~~~~~~~~~~~ 241 (456)
T 1lqt_A 162 VARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGITDEDAAAV 241 (456)
T ss_dssp HHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCGGGCCCCHHHHHHGGGCTTEEEECCGGGGTTCCHHHHHHH
T ss_pred HHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCChhhhccChHHHHHhhcCCCceeeeChHHhccchhhhhhhc
Confidence 9999998888899999999999999988888999999999999999999999999999999888877763 111122334
Q ss_pred cchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCc----------cccCCceeEEecce
Q psy4525 246 ARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQ----------ALVTEDTELIPSGI 315 (388)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~----------~~~~~~~~~l~~D~ 315 (388)
++.++++.+.+.+.+..... ...+||+++++..++++..+ +++.++++.+.. .+.+++.++++||+
T Consensus 242 ~~~~~~~~~~l~~~~~~~~~--~~~~gv~i~~~~~~~~i~~~--~~v~~v~~~~~~~~~~~~~~~~~~~~g~~~~i~~d~ 317 (456)
T 1lqt_A 242 GKVCKQNIKVLRGYADREPR--PGHRRMVFRFLTSPIEIKGK--RKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQL 317 (456)
T ss_dssp CHHHHHHHHHHHHHHTCC-C--TTSEEEEEECSEEEEEEECS--SSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSE
T ss_pred cHHHHHHHHHHHHHhhcCCC--CCCceEEEEeCCCCeEEecC--CcEeEEEEEEEEecCCCcccccccCCCceEEEEcCE
Confidence 56666666777665432111 12389999999999999853 566667665310 11233346899999
Q ss_pred EEEccccCCccCCCCCcccCCCccc-------------------------------------------------c-----
Q psy4525 316 AFRSIGYQSRCVDSDIPFNEKSCTV-------------------------------------------------I----- 341 (388)
Q Consensus 316 Vi~a~G~~p~~~~~~l~~~~~~gi~-------------------------------------------------l----- 341 (388)
||+|+|++|+++ .+++++.+++++ +
T Consensus 318 vi~a~G~~p~~l-~gl~~d~~g~i~vn~~~rvt~~pgvya~GD~~~gp~~~i~~a~~~g~~~a~~i~~~l~~~~l~~~~~ 396 (456)
T 1lqt_A 318 VVRSVGYRGVPT-PGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTLIKNLGNAKEGAECK 396 (456)
T ss_dssp EEECSCEECCCC-TTSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCSCTTHHHHHHHHHHHHHHHHHHHHHHTTCSC
T ss_pred EEEccccccCCC-CCCcccCCCCeeECCCCcCCCCCCEEEEeccCCCCchhHHHHHHHHHHHHHHHHHHHHhCccccccc
Confidence 999999999986 377777555543 2
Q ss_pred --------------CCCCCCeecchhhHHhHHHHHHccccCCCCccccCCHHHHHhhhc
Q psy4525 342 --------------PKEGVPVVTWEGWKAIDKEETERGKLKGKPREKIISIEEMISVSG 386 (388)
Q Consensus 342 --------------~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 386 (388)
..++..+++|++|++||++|+++|+..||+|.||++++|||++++
T Consensus 397 ~~~~~~~~~~~~~l~~~~~~~~~~~~w~~id~~e~~~g~~~g~~r~k~~~~~~m~~~~~ 455 (456)
T 1lqt_A 397 SFPEDHADQVADWLAARQPKLVTSAHWQVIDAFERAAGEPHGRPRVKLASLAELLRIGL 455 (456)
T ss_dssp CC--CHHHHHHHHHHHHCTTCEEHHHHHHHHHHHHHHHGGGTSSCCCCCSHHHHHHHHC
T ss_pred CCCCCchHHHHHHHHHcCCCeecHHHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHhc
Confidence 135667899999999999999999999999999999999999875
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-32 Score=268.02 Aligned_cols=276 Identities=21% Similarity=0.310 Sum_probs=200.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
...++|+||||||||+++|..|++ .|++|+|||+.+.+||.++|++ |.+...+++..+..+++++.+++|+.++.++
T Consensus 120 ~~~~~V~IIGgGpAGl~aA~~L~~--~G~~V~v~e~~~~~GG~l~~gi-p~~~~~~~~~~~~~~~l~~~gv~~~~~~~v~ 196 (456)
T 2vdc_G 120 ELGLSVGVIGAGPAGLAAAEELRA--KGYEVHVYDRYDRMGGLLVYGI-PGFKLEKSVVERRVKLLADAGVIYHPNFEVG 196 (456)
T ss_dssp SCCCCEEEECCSHHHHHHHHHHHH--HTCCEEEECSSSSCSTHHHHTS-CTTTSCHHHHHHHHHHHHHTTCEEETTCCBT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCCCCCeeeecC-CCccCCHHHHHHHHHHHHHCCcEEEeCCEec
Confidence 356899999999999999999999 7999999999999999999998 7777777788888888888999999998776
Q ss_pred EEeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccC--CCC--cccc--CcCCCCCeEEEEcCChHH
Q psy4525 91 QDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNG--LPE--DASL--DLSLDCEEATILGQGNVA 164 (388)
Q Consensus 91 ~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~--~~~--~~~~--~~~~~~~~vvVIGgG~sg 164 (388)
.+++.++....||+||+|||+..++.+++||.+.++++++.+|+...+. ... .... .....+++|+|||||++|
T Consensus 197 ~~v~~~~~~~~~d~vvlAtG~~~~~~~~ipG~~~~gv~~a~~~l~~~~~~~~~~~~~~~~~g~~~~~gk~VvVIGgG~~a 276 (456)
T 2vdc_G 197 RDASLPELRRKHVAVLVATGVYKARDIKAPGSGLGNIVAALDYLTTSNKVSLGDTVEAYENGSLNAAGKHVVVLGGGDTA 276 (456)
T ss_dssp TTBCHHHHHSSCSEEEECCCCCEECCTTCSCCTTTTEEEHHHHHHHHHHHHCTTTCSSCCTTCSCCCCSEEEEECSSHHH
T ss_pred cEEEhhHhHhhCCEEEEecCCCCCCCCCCCCCcCCCcEEHHHHHHHhhhhhcccccccccccccccCCCEEEEECCChhH
Confidence 5555555555799999999997556789999988999998887643211 000 0000 022468999999999999
Q ss_pred HHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhcc
Q psy4525 165 MDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASAT 244 (388)
Q Consensus 165 ~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~ 244 (388)
+|+|..+. +.++++|++++|++....+....++.
T Consensus 277 ~d~A~~~~--------------------r~Ga~~Vtiv~r~~~~~~p~~~~e~~-------------------------- 310 (456)
T 2vdc_G 277 MDCVRTAI--------------------RQGATSVKCLYRRDRKNMPGSQREVA-------------------------- 310 (456)
T ss_dssp HHHHHHHH--------------------HTTCSEEEEECSSCSTTCSSCHHHHH--------------------------
T ss_pred HHHHHHHH--------------------HcCCCEEEEEEeCCccCCCCCHHHHH--------------------------
Confidence 99999665 35667899999998654443332221
Q ss_pred ccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEc---------cCcc--c-cCCceeEEe
Q psy4525 245 LARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFA---------NQQA--L-VTEDTELIP 312 (388)
Q Consensus 245 l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~---------~~~~--~-~~~~~~~l~ 312 (388)
.+ .+.||+++++..++++.. ++++.++++. +++. + ..++.++++
T Consensus 311 ----------~~------------~~~Gv~~~~~~~~~~i~~--~g~v~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~ 366 (456)
T 2vdc_G 311 ----------HA------------EEEGVEFIWQAAPEGFTG--DTVVTGVRAVRIHLGVADATGRQTPQVIEGSEFTVQ 366 (456)
T ss_dssp ----------HH------------HHTTCEEECCSSSCCEEE--EEEEETTEEEEEEEEEEEECTTCCEEEEEEEEEEEE
T ss_pred ----------HH------------HHCCCEEEeCCCceEEeC--CCcEEEEEEEEEEecccCCcCCccccccCCcEEEEE
Confidence 11 157899999999999985 3555444332 1110 0 134557899
Q ss_pred cceEEEccccCCccC-----CCCCcccCCCccccCCCCCCeecchhhHHhHH
Q psy4525 313 SGIAFRSIGYQSRCV-----DSDIPFNEKSCTVIPKEGVPVVTWEGWKAIDK 359 (388)
Q Consensus 313 ~D~Vi~a~G~~p~~~-----~~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~ 359 (388)
||.||+|+|++|+.. ..++.+++++.+.+|+.....-..+.|...|+
T Consensus 367 aD~Vi~A~G~~p~~~~~~l~~~gl~~~~~G~i~vd~~~~~Ts~~~VfA~GD~ 418 (456)
T 2vdc_G 367 ADLVIKALGFEPEDLPNAFDEPELKVTRWGTLLVDHRTKMTNMDGVFAAGDI 418 (456)
T ss_dssp CSEEEECSCEECCCHHHHHHSTTSCBCTTSSBCCCTTTCBCSSTTEEECGGG
T ss_pred CCEEEECCCCCCCcchhhcccCCeeECCCCCEEECCCCCcCCCCCEEEeccc
Confidence 999999999999862 24677777677778765222222344555553
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-27 Score=220.56 Aligned_cols=262 Identities=16% Similarity=0.176 Sum_probs=169.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC----CCCceee-----CC--CCCCcchhHHHHHHHHhhcCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV----PFGLVRY-----GV--APDHPEVKNVINTFTKTGDNPR 80 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~----~gg~~~~-----g~--~p~~~~~~~~~~~~~~~~~~~~ 80 (388)
..+||+||||||||++||..+++ .|++|+|||+... ++|.+.. .. .|......++..++.+.+.+.+
T Consensus 3 ~~yDvvIIG~GpAGl~AA~~la~--~g~~v~liE~~~~gg~~~~G~~~~~~~i~~~~g~~~~i~~~~l~~~~~~~~~~~~ 80 (314)
T 4a5l_A 3 NIHDVVIIGSGPAAHTAAIYLGR--SSLKPVMYEGFMAGGVAAGGQLTTTTIIENFPGFPNGIDGNELMMNMRTQSEKYG 80 (314)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHH--TTCCCEEECCSSGGGCCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTT
T ss_pred CCCcEEEECCCHHHHHHHHHHHH--CCCCEEEEecCCCCCcccCCCcCChHHhhhccCCcccCCHHHHHHHHHHHHhhcC
Confidence 35899999999999999999999 8999999998742 3333211 11 0233356778888888888888
Q ss_pred cEEEceEEEEEE-------eeeccc-ccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCC
Q psy4525 81 VNFYGNICLGQD-------ISLGDL-TNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDC 152 (388)
Q Consensus 81 i~~~~~~~v~~~-------~~~~~~-~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (388)
+.+......... +...+. ...||+||+|||+.+ +.+++||.+........... .+........+
T Consensus 81 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~liiATG~~~-~~~~ipG~~~~~~~~~~~~~-------~~~~~~~~~~~ 152 (314)
T 4a5l_A 81 TTIITETIDHVDFSTQPFKLFTEEGKEVLTKSVIIATGATA-KRMHVPGEDKYWQNGVSACA-------ICDGAVPIFRN 152 (314)
T ss_dssp CEEECCCEEEEECSSSSEEEEETTCCEEEEEEEEECCCEEE-CCCCCTTHHHHBTTTEESCH-------HHHTTSGGGTT
T ss_pred cEEEEeEEEEeecCCCceEEEECCCeEEEEeEEEEcccccc-cccCCCccccccccceeeeh-------hhhhhhhhcCC
Confidence 887766544321 222222 347999999999988 68899986532111100110 11111223457
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecc
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRN 232 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~ 232 (388)
++++|||+|++|+|+|..|+ ....+||+++|....... ..+
T Consensus 153 ~~vvViGgG~ig~e~A~~l~---------------------~~G~~Vt~v~~~~~~~~~---~~~--------------- 193 (314)
T 4a5l_A 153 KVLMVVGGGDAAMEEALHLT---------------------KYGSKVIILHRRDAFRAS---KTM--------------- 193 (314)
T ss_dssp SEEEEECSSHHHHHHHHHHT---------------------TTSSEEEEECSSSSCCSC---HHH---------------
T ss_pred CeEEEECCChHHHHHHHHHH---------------------HhCCeeeeeccccccccc---chh---------------
Confidence 99999999999999999886 334689999987654322 000
Q ss_pred cccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEe
Q psy4525 233 EQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIP 312 (388)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~ 312 (388)
.... ....++..++...+.++... .....++++.+. .++++++++
T Consensus 194 --------------------~~~~-----------~~~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~---~~~~~~~i~ 238 (314)
T 4a5l_A 194 --------------------QERV-----------LNHPKIEVIWNSELVELEGD-GDLLNGAKIHNL---VSGEYKVVP 238 (314)
T ss_dssp --------------------HHHH-----------HTCTTEEEECSEEEEEEEES-SSSEEEEEEEET---TTCCEEEEE
T ss_pred --------------------hhhh-----------hcccceeeEeeeeeEEEEee-eeccceeEEeec---ccccceeec
Confidence 0000 11456677777777777754 345556655432 367788999
Q ss_pred cceEEEccccCCccCC--CCCcccCCCccccCCCCCCeecchhhHHhHH
Q psy4525 313 SGIAFRSIGYQSRCVD--SDIPFNEKSCTVIPKEGVPVVTWEGWKAIDK 359 (388)
Q Consensus 313 ~D~Vi~a~G~~p~~~~--~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~ 359 (388)
||.|++|+|++||+.. ..+.++ .+|+++|+..... ..+.|...|+
T Consensus 239 ~d~vi~a~G~~pn~~~l~~~~~~~-~~G~iv~~~~~Ts-~pgIyA~GDv 285 (314)
T 4a5l_A 239 VAGLFYAIGHSPNSKFLGGQVKTA-DDGYILTEGPKTS-VDGVFACGDV 285 (314)
T ss_dssp CSEEEECSCEEESCGGGTTSSCBC-TTSCBCCBTTBCS-STTEEECSTT
T ss_pred cccceEecccccChhHhcccceEc-CCeeEeCCCCccC-CCCEEEEEec
Confidence 9999999999999853 234444 4577777665322 2355665554
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-26 Score=214.83 Aligned_cols=262 Identities=16% Similarity=0.190 Sum_probs=176.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC----CCCCCceeeCC----C---CCCcchhHHHHHHHHhhcCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL----PVPFGLVRYGV----A---PDHPEVKNVINTFTKTGDNPR 80 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~----~~~gg~~~~g~----~---p~~~~~~~~~~~~~~~~~~~~ 80 (388)
.+++|+||||||+|+++|..|++ .|++|+|||+. ..+||.|.+.. . |......++..++.+.+.+.+
T Consensus 21 ~~~~vvIIG~G~aGl~aA~~l~~--~g~~v~vie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 98 (338)
T 3itj_A 21 VHNKVTIIGSGPAAHTAAIYLAR--AEIKPILYEGMMANGIAAGGQLTTTTEIENFPGFPDGLTGSELMDRMREQSTKFG 98 (338)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHH--TTCCCEEECCSSBTTBCTTCGGGGSSEECCSTTCTTCEEHHHHHHHHHHHHHHTT
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--CCCCEEEEecCCCCCCCcCcccccchhhcccCCCcccCCHHHHHHHHHHHHHHcC
Confidence 45899999999999999999999 89999999994 47888875421 1 333456788888888888899
Q ss_pred cEEEceEEEEEE-------eee----cccccccCEEEEeeCCCCCCCCCCCCCC---CCCeeecccccccccCCCCcccc
Q psy4525 81 VNFYGNICLGQD-------ISL----GDLTNAYHAVVLTYGADNDKKLNIPGED---GKNIISARSFVGWYNGLPEDASL 146 (388)
Q Consensus 81 i~~~~~~~v~~~-------~~~----~~~~~~yd~lvlAtG~~~~~~~~i~g~~---~~~v~~~~~~~~~~~~~~~~~~~ 146 (388)
++++.++.+..+ +.. +.....||+||+|||+.+ +.+++||.+ ...+.+...... .
T Consensus 99 v~i~~~~v~~i~~~~~~~~v~~~~~~~~~~~~~d~vvlAtG~~~-~~~~~~g~~~~~~~~~~~~~~~~~----------~ 167 (338)
T 3itj_A 99 TEIITETVSKVDLSSKPFKLWTEFNEDAEPVTTDAIILATGASA-KRMHLPGEETYWQKGISACAVCDG----------A 167 (338)
T ss_dssp CEEECSCEEEEECSSSSEEEEETTCSSSCCEEEEEEEECCCEEE-CCCCCTTHHHHBTTTEESCHHHHT----------T
T ss_pred CEEEEeEEEEEEEcCCEEEEEEEecCCCcEEEeCEEEECcCCCc-CCCCCCCchhccCccEEEchhccc----------c
Confidence 999988743322 111 112347999999999977 577888753 122222111110 0
Q ss_pred CcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCc
Q psy4525 147 DLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHV 226 (388)
Q Consensus 147 ~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~ 226 (388)
.....+++++|||+|.+|+|+|..|. ....+|+++.|.+.+...
T Consensus 168 ~~~~~~~~v~vvG~G~~g~e~a~~l~---------------------~~g~~v~~v~~~~~~~~~--------------- 211 (338)
T 3itj_A 168 VPIFRNKPLAVIGGGDSACEEAQFLT---------------------KYGSKVFMLVRKDHLRAS--------------- 211 (338)
T ss_dssp SGGGTTSEEEEECSSHHHHHHHHHHT---------------------TTSSEEEEECSSSSCCSC---------------
T ss_pred hhhcCCCEEEEECCCHHHHHHHHHHH---------------------hcCCEEEEEEcCCccCCC---------------
Confidence 11345799999999999999999886 223579999998764321
Q ss_pred eEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCC
Q psy4525 227 QTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTE 306 (388)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~ 306 (388)
..+.+.+. ...||++++++.++++..++ +.+..+.+.+. .++
T Consensus 212 -----------------------~~~~~~l~-----------~~~gv~i~~~~~v~~i~~~~-~~~~~v~~~~~---~~g 253 (338)
T 3itj_A 212 -----------------------TIMQKRAE-----------KNEKIEILYNTVALEAKGDG-KLLNALRIKNT---KKN 253 (338)
T ss_dssp -----------------------HHHHHHHH-----------HCTTEEEECSEEEEEEEESS-SSEEEEEEEET---TTT
T ss_pred -----------------------HHHHHHHH-----------hcCCeEEeecceeEEEEccc-CcEEEEEEEEC---CCC
Confidence 11111221 13499999999999998753 56777777542 245
Q ss_pred ceeEEecceEEEccccCCccCC--CCCcccCCCccccCCCCCCeecchhhHHhHHH
Q psy4525 307 DTELIPSGIAFRSIGYQSRCVD--SDIPFNEKSCTVIPKEGVPVVTWEGWKAIDKE 360 (388)
Q Consensus 307 ~~~~l~~D~Vi~a~G~~p~~~~--~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~~ 360 (388)
++++++||.||+|+|++|+... .++++++++.+.+++.....-..+.|...|+.
T Consensus 254 ~~~~i~~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~v~~~~~~t~~~~vya~GD~~ 309 (338)
T 3itj_A 254 EETDLPVSGLFYAIGHTPATKIVAGQVDTDEAGYIKTVPGSSLTSVPGFFAAGDVQ 309 (338)
T ss_dssp EEEEEECSEEEECSCEEECCGGGBTTBCBCTTSCBCCCTTSSBCSSTTEEECGGGG
T ss_pred ceEEEEeCEEEEEeCCCCChhHhhCceEecCCCcEEEcCcccccCCCCEEEeeccC
Confidence 5678999999999999998742 35666655445433333222223455555544
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=221.75 Aligned_cols=249 Identities=15% Similarity=0.170 Sum_probs=164.8
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCC----CCCCcchhHHHHHHHHhhcCCCcEEEceEEE
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGV----APDHPEVKNVINTFTKTGDNPRVNFYGNICL 89 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~----~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v 89 (388)
++|+|||||+||+++|..|++..++.+|+|||+++.+|.. ..+. ........++.....+.+.+.+++++.+..+
T Consensus 3 ~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~~~~~~V 81 (452)
T 3oc4_A 3 LKIVIIGASFAGISAAIASRKKYPQAEISLIDKQATVGYL-SGGLSAYFNHTINELHEARYITEEELRRQKIQLLLNREV 81 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCCSSC-CC----------------CCCCHHHHHHTTEEEECSCEE
T ss_pred CCEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCccc-CccchhhhcCCCCCHHHhhcCCHHHHHHCCCEEEECCEE
Confidence 5999999999999999999996559999999999876621 1111 0011111122111234445578888877665
Q ss_pred EE-E-----eee----cccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEc
Q psy4525 90 GQ-D-----ISL----GDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILG 159 (388)
Q Consensus 90 ~~-~-----~~~----~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG 159 (388)
.. + +.+ +.....||+||+|||+.+ +.|++||.+.+++++..++...... . .....+++++|||
T Consensus 82 ~~id~~~~~v~v~~~~~~~~~~~d~lviAtG~~p-~~p~i~g~~~~~v~~~~~~~~~~~~----~--~~~~~~~~vvViG 154 (452)
T 3oc4_A 82 VAMDVENQLIAWTRKEEQQWYSYDKLILATGASQ-FSTQIRGSQTEKLLKYKFLSGALAA----V--PLLENSQTVAVIG 154 (452)
T ss_dssp EEEETTTTEEEEEETTEEEEEECSEEEECCCCCB-CCCCCBTTTCTTEEEGGGCC----C----C--HHHHTCSEEEEEC
T ss_pred EEEECCCCEEEEEecCceEEEEcCEEEECCCccc-CCCCCCCCCCCCEEEeCCHHHHHHH----H--HHHhcCCEEEEEC
Confidence 32 1 222 112347999999999987 5788999888888877665422110 0 1122478999999
Q ss_pred CChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccch
Q psy4525 160 QGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVH 239 (388)
Q Consensus 160 gG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~ 239 (388)
+|++|+|+|..|. +.+ .+|+++.|.+.+...+.++++.
T Consensus 155 gG~~g~E~A~~l~--------------------~~g-~~Vtlv~~~~~~l~~~~d~~~~--------------------- 192 (452)
T 3oc4_A 155 AGPIGMEAIDFLV--------------------KMK-KTVHVFESLENLLPKYFDKEMV--------------------- 192 (452)
T ss_dssp CSHHHHHHHHHHH--------------------HTT-CEEEEEESSSSSSTTTCCHHHH---------------------
T ss_pred CCHHHHHHHHHHH--------------------hCC-CeEEEEEccCccccccCCHHHH---------------------
Confidence 9999999999876 233 5799999998765442222322
Q ss_pred hhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEc
Q psy4525 240 EASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRS 319 (388)
Q Consensus 240 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a 319 (388)
+.+.+.+. +.||++++++.++++..++ +.+ .+.+ +++ +++||.||+|
T Consensus 193 ----------~~l~~~l~------------~~GV~i~~~~~v~~i~~~~-~~v-~v~~--------~~g-~i~aD~Vv~A 239 (452)
T 3oc4_A 193 ----------AEVQKSLE------------KQAVIFHFEETVLGIEETA-NGI-VLET--------SEQ-EISCDSGIFA 239 (452)
T ss_dssp ----------HHHHHHHH------------TTTEEEEETCCEEEEEECS-SCE-EEEE--------SSC-EEEESEEEEC
T ss_pred ----------HHHHHHHH------------HcCCEEEeCCEEEEEEccC-CeE-EEEE--------CCC-EEEeCEEEEC
Confidence 12222222 6799999999999998543 455 4443 333 7999999999
Q ss_pred cccCCccCC--CCCcccCCCccccCCCC
Q psy4525 320 IGYQSRCVD--SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 320 ~G~~p~~~~--~~l~~~~~~gi~l~~~~ 345 (388)
+|++||+.. ..+.++.++++.+|+..
T Consensus 240 ~G~~p~~~~l~~~~~~~~~g~i~vd~~~ 267 (452)
T 3oc4_A 240 LNLHPQLAYLDKKIQRNLDQTIAVDAYL 267 (452)
T ss_dssp SCCBCCCSSCCTTSCBCTTSCBCCCTTC
T ss_pred cCCCCChHHHHhhhccCCCCCEEECcCc
Confidence 999999853 23667777778887653
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.9e-27 Score=249.96 Aligned_cols=260 Identities=20% Similarity=0.254 Sum_probs=185.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
..++|+||||||||++||..|++ .|+ +|+|||+.+.+||.+.|++ |.+....++.++..+++++.|++++.++.++
T Consensus 186 ~~~~VvVIGgGpAGl~aA~~L~~--~G~~~Vtv~E~~~~~GG~~~~~i-p~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~ 262 (1025)
T 1gte_A 186 YSAKIALLGAGPASISCASFLAR--LGYSDITIFEKQEYVGGLSTSEI-PQFRLPYDVVNFEIELMKDLGVKIICGKSLS 262 (1025)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHH--TTCCCEEEEESSSSCSTHHHHTS-CTTTSCHHHHHHHHHHHHTTTCEEEESCCBS
T ss_pred CCCEEEEECccHHHHHHHHHHHh--cCCCcEEEEeCCCCCCccccccC-CcccCCHHHHHHHHHHHHHCCcEEEcccEec
Confidence 35799999999999999999999 898 7999999999999999988 7776667777777888888999999888775
Q ss_pred E-Eeeecccc-cccCEEEEeeCCCCCCCCCC-CCCC-CCCeeecccccccccCC---CCcc-ccCcCCCCCeEEEEcCCh
Q psy4525 91 Q-DISLGDLT-NAYHAVVLTYGADNDKKLNI-PGED-GKNIISARSFVGWYNGL---PEDA-SLDLSLDCEEATILGQGN 162 (388)
Q Consensus 91 ~-~~~~~~~~-~~yd~lvlAtG~~~~~~~~i-~g~~-~~~v~~~~~~~~~~~~~---~~~~-~~~~~~~~~~vvVIGgG~ 162 (388)
. ++++++.. ..||+||||||+..++.+++ +|.+ .++++++.+|+...+.. ..+. .......+++|+|||||+
T Consensus 263 ~~~v~~~~~~~~~~d~vvlAtGa~~p~~l~~~~G~~~~~gv~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~VvVIGgG~ 342 (1025)
T 1gte_A 263 ENEITLNTLKEEGYKAAFIGIGLPEPKTDDIFQGLTQDQGFYTSKDFLPLVAKSSKAGMCACHSPLPSIRGAVIVLGAGD 342 (1025)
T ss_dssp TTSBCHHHHHHTTCCEEEECCCCCEECCCGGGTTCCTTTTEEEHHHHHHHHHHHHCBTTBSCCCCCCCCCSEEEEECSSH
T ss_pred cceEEhhhcCccCCCEEEEecCCCCCCCCCCCCCCCCCCCEEEhHHHHHHHHhhcccccccccccccccCCcEEEECCCh
Confidence 3 34444433 47999999999852245554 4643 46899988887532110 0000 001122357999999999
Q ss_pred HHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhh
Q psy4525 163 VAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEAS 242 (388)
Q Consensus 163 sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~ 242 (388)
+|+|+|..+. +.|+++||+++|++....+..+.++..
T Consensus 343 ~g~e~A~~~~--------------------~~G~~~Vtvv~r~~~~~~~~~~~e~~~----------------------- 379 (1025)
T 1gte_A 343 TAFDCATSAL--------------------RCGARRVFLVFRKGFVNIRAVPEEVEL----------------------- 379 (1025)
T ss_dssp HHHHHHHHHH--------------------HTTCSEEEEECSSCGGGCCSCHHHHHH-----------------------
T ss_pred HHHHHHHHHH--------------------HcCCCEEEEEEecChhhCCCCHHHHHH-----------------------
Confidence 9999999775 356678999999875443333333211
Q ss_pred ccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEc------cCccc-cCCceeEEecce
Q psy4525 243 ATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFA------NQQAL-VTEDTELIPSGI 315 (388)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~------~~~~~-~~~~~~~l~~D~ 315 (388)
+ .+.||+++++..++++..+ ++++.++++. ++..+ ..++.++++||.
T Consensus 380 -------------~------------~~~Gv~~~~~~~~~~i~~~-~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~aD~ 433 (1025)
T 1gte_A 380 -------------A------------KEEKCEFLPFLSPRKVIVK-GGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADV 433 (1025)
T ss_dssp -------------H------------HHTTCEEECSEEEEEEEEE-TTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSE
T ss_pred -------------H------------HHcCCEEEeCCCceEEEcc-CCeEEEEEEEEeEEcCCCCcccCCCceEEEECCE
Confidence 1 1578999999999999863 5778777664 22111 123346899999
Q ss_pred EEEccccCCccC-----CCCCcccCCCccccCC
Q psy4525 316 AFRSIGYQSRCV-----DSDIPFNEKSCTVIPK 343 (388)
Q Consensus 316 Vi~a~G~~p~~~-----~~~l~~~~~~gi~l~~ 343 (388)
||+|+|++|+.. ..++.+++++.+.+|+
T Consensus 434 Vi~A~G~~~~~~~l~~~~~gl~~~~~G~I~vd~ 466 (1025)
T 1gte_A 434 VISAFGSVLRDPKVKEALSPIKFNRWDLPEVDP 466 (1025)
T ss_dssp EEECSCEECCCHHHHHHTTTSCBCTTSSBCCCT
T ss_pred EEECCCCCCCchhhhhcccCceECCCCCEEECC
Confidence 999999987531 1367777655577775
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-25 Score=208.44 Aligned_cols=255 Identities=17% Similarity=0.157 Sum_probs=175.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEE-EcCCCCCCCceeeCC----CCCC---cchhHHHHHHHHhhcCCCcEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDI-YEKLPVPFGLVRYGV----APDH---PEVKNVINTFTKTGDNPRVNF 83 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~l-ie~~~~~gg~~~~g~----~p~~---~~~~~~~~~~~~~~~~~~i~~ 83 (388)
.+++|+||||||||+++|..|++ .+++|+| +|+ +.+||.|.+.. .|.. ....++..++.+++.+.++++
T Consensus 3 ~~~~vvIIG~G~aGl~aA~~l~~--~g~~v~li~e~-~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 79 (315)
T 3r9u_A 3 AMLDVAIIGGGPAGLSAGLYATR--GGLKNVVMFEK-GMPGGQITSSSEIENYPGVAQVMDGISFMAPWSEQCMRFGLKH 79 (315)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHH--HTCSCEEEECS-SSTTGGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHTTTCCEE
T ss_pred CCceEEEECCCHHHHHHHHHHHH--CCCCeEEEEeC-CCCCceeeeeceeccCCCCCCCCCHHHHHHHHHHHHHHcCcEE
Confidence 45799999999999999999999 7999999 999 67788774311 1333 356788889999999999999
Q ss_pred EceEEEEE------Eee----ecccccccCEEEEeeCCCCCCCCCCCCCCC---CCeeecccccccccCCCCccccCcCC
Q psy4525 84 YGNICLGQ------DIS----LGDLTNAYHAVVLTYGADNDKKLNIPGEDG---KNIISARSFVGWYNGLPEDASLDLSL 150 (388)
Q Consensus 84 ~~~~~v~~------~~~----~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~ 150 (388)
+.+..+.. .+. .++ ...||+||+|||+.+ +.+++||.+. ..+.+..... ....
T Consensus 80 ~~~~v~~i~~~~~~~~~v~~~~~~-~~~~d~lvlAtG~~~-~~~~~~g~~~~~~~~~~~~~~~~------------~~~~ 145 (315)
T 3r9u_A 80 EMVGVEQILKNSDGSFTIKLEGGK-TELAKAVIVCTGSAP-KKAGFKGEDEFFGKGVSTCATCD------------GFFY 145 (315)
T ss_dssp ECCCEEEEEECTTSCEEEEETTSC-EEEEEEEEECCCEEE-CCCCCBTTTTTBTTTEESCHHHH------------GGGG
T ss_pred EEEEEEEEecCCCCcEEEEEecCC-EEEeCEEEEeeCCCC-CCCCCCChhhcCCCeEEeeeccc------------cccc
Confidence 87744332 011 112 347999999999976 5778888653 2332221111 1223
Q ss_pred CCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEe
Q psy4525 151 DCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVF 230 (388)
Q Consensus 151 ~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~ 230 (388)
.+++++|||+|.+|+|+|..|. ....+|++++|++.+.. ....
T Consensus 146 ~~~~v~viG~g~~~~e~a~~l~---------------------~~g~~v~~~~~~~~~~~--~~~~-------------- 188 (315)
T 3r9u_A 146 KNKEVAVLGGGDTALEEALYLA---------------------NICSKIYLIHRRDEFRA--APST-------------- 188 (315)
T ss_dssp TTSEEEEECCBHHHHHHHHHHH---------------------TTSSEEEEECSSSSCBS--CHHH--------------
T ss_pred CcCEEEEECCCHHHHHHHHHHH---------------------hhCCEEEEEEeCCCCCC--CHHH--------------
Confidence 5799999999999999999886 22357999999876421 1111
Q ss_pred cccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeE
Q psy4525 231 RNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTEL 310 (388)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~ 310 (388)
...+. .+.||++++++.++++..+ ++.+..+.+.. ..++..+
T Consensus 189 ----------------------~~~~~-----------~~~gv~~~~~~~v~~i~~~-~~~~~~v~~~~----~~g~~~~ 230 (315)
T 3r9u_A 189 ----------------------VEKVK-----------KNEKIELITSASVDEVYGD-KMGVAGVKVKL----KDGSIRD 230 (315)
T ss_dssp ----------------------HHHHH-----------HCTTEEEECSCEEEEEEEE-TTEEEEEEEEC----TTSCEEE
T ss_pred ----------------------HHHHH-----------hcCCeEEEeCcEEEEEEcC-CCcEEEEEEEc----CCCCeEE
Confidence 11111 1579999999999999864 35777777641 1344458
Q ss_pred EecceEEEccccCCccCC--C-----CCcccCCCccccCCCCCCeecchhhHHhHH
Q psy4525 311 IPSGIAFRSIGYQSRCVD--S-----DIPFNEKSCTVIPKEGVPVVTWEGWKAIDK 359 (388)
Q Consensus 311 l~~D~Vi~a~G~~p~~~~--~-----~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~ 359 (388)
+++|.||+|+|++|+... . ++++++++.+.+|+.... -..+.|...|+
T Consensus 231 ~~~D~vv~a~G~~p~~~~~~~~~~~g~l~~~~~g~i~vd~~~~t-~~~~v~a~GD~ 285 (315)
T 3r9u_A 231 LNVPGIFTFVGLNVRNEILKQDDSKFLCNMEEGGQVSVDLKMQT-SVAGLFAAGDL 285 (315)
T ss_dssp ECCSCEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTCBC-SSTTEEECGGG
T ss_pred eecCeEEEEEcCCCCchhhhcccccceeeecCCCcEEeCCCccc-CCCCEEEeecc
Confidence 999999999999999742 2 266666666777764332 22345555554
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-25 Score=209.14 Aligned_cols=243 Identities=20% Similarity=0.273 Sum_probs=164.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeC----CCCCC---cchhHHHHHHHHhhcCCCcEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYG----VAPDH---PEVKNVINTFTKTGDNPRVNFY 84 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g----~~p~~---~~~~~~~~~~~~~~~~~~i~~~ 84 (388)
..++|+||||||||+++|..|++ .|.+|+|||+. .+||.+.+. ..|.+ ....++..++.+.+++.+++++
T Consensus 7 ~~~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv~~~ 83 (325)
T 2q7v_A 7 HDYDVVIIGGGPAGLTAAIYTGR--AQLSTLILEKG-MPGGQIAWSEEVENFPGFPEPIAGMELAQRMHQQAEKFGAKVE 83 (325)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-CTTGGGGGCSCBCCSTTCSSCBCHHHHHHHHHHHHHHTTCEEE
T ss_pred ccCCEEEECCCHHHHHHHHHHHH--cCCcEEEEeCC-CCCcccccccccccCCCCCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence 35799999999999999999999 89999999998 678877431 11222 2456777778888888899887
Q ss_pred ceEEEEEEe----------eeccc-ccccCEEEEeeCCCCCCCCCCCCCCC---CCeeecccccccccCCCCccccCcCC
Q psy4525 85 GNICLGQDI----------SLGDL-TNAYHAVVLTYGADNDKKLNIPGEDG---KNIISARSFVGWYNGLPEDASLDLSL 150 (388)
Q Consensus 85 ~~~~v~~~~----------~~~~~-~~~yd~lvlAtG~~~~~~~~i~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~ 150 (388)
.+.....+. ...+. ...||+||+|||+.+ +.+++||.+. .+++...... ....
T Consensus 84 ~~~v~~i~~~~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~-~~~~i~g~~~~~~~~~~~~~~~~------------~~~~ 150 (325)
T 2q7v_A 84 MDEVQGVQHDATSHPYPFTVRGYNGEYRAKAVILATGADP-RKLGIPGEDNFWGKGVSTCATCD------------GFFY 150 (325)
T ss_dssp ECCEEEEEECTTSSSCCEEEEESSCEEEEEEEEECCCEEE-CCCCCTTTTTTBTTTEESCHHHH------------GGGG
T ss_pred eeeEEEEEeccCCCceEEEEECCCCEEEeCEEEECcCCCc-CCCCCCChhhccCceEEEeccCC------------HHHc
Confidence 654332221 11122 247999999999977 5778888652 2222111110 1123
Q ss_pred CCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEe
Q psy4525 151 DCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVF 230 (388)
Q Consensus 151 ~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~ 230 (388)
.+++++|||+|.+|+|+|..|. ....+|+++.|++.+.. . ++
T Consensus 151 ~~~~v~VvG~G~~g~e~A~~l~---------------------~~g~~Vtlv~~~~~~~~--~-~~-------------- 192 (325)
T 2q7v_A 151 KGKKVVVIGGGDAAVEEGMFLT---------------------KFADEVTVIHRRDTLRA--N-KV-------------- 192 (325)
T ss_dssp TTCEEEEECCSHHHHHHHHHHT---------------------TTCSEEEEECSSSSCCS--C-HH--------------
T ss_pred CCCEEEEECCCHHHHHHHHHHH---------------------hcCCEEEEEeCCCcCCc--c-hH--------------
Confidence 4789999999999999999886 22468999999875421 1 11
Q ss_pred cccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeE
Q psy4525 231 RNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTEL 310 (388)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~ 310 (388)
+.+.+. ...||++++++.++++..+ +.+..+.+.+. ..++..+
T Consensus 193 ---------------------~~~~l~-----------~~~gv~i~~~~~v~~i~~~--~~v~~v~~~~~---~~g~~~~ 235 (325)
T 2q7v_A 193 ---------------------AQARAF-----------ANPKMKFIWDTAVEEIQGA--DSVSGVKLRNL---KTGEVSE 235 (325)
T ss_dssp ---------------------HHHHHH-----------TCTTEEEECSEEEEEEEES--SSEEEEEEEET---TTCCEEE
T ss_pred ---------------------HHHHHH-----------hcCCceEecCCceEEEccC--CcEEEEEEEEC---CCCcEEE
Confidence 111111 1469999999999999863 56667766421 1244458
Q ss_pred EecceEEEccccCCccC-C-CCCcccCCCccccCCCC
Q psy4525 311 IPSGIAFRSIGYQSRCV-D-SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 311 l~~D~Vi~a~G~~p~~~-~-~~l~~~~~~gi~l~~~~ 345 (388)
++||.||+|+|++||.. . ..+++++++++.+|+..
T Consensus 236 i~~D~vi~a~G~~p~~~~l~~~~~~~~~g~i~vd~~~ 272 (325)
T 2q7v_A 236 LATDGVFIFIGHVPNTAFVKDTVSLRDDGYVDVRDEI 272 (325)
T ss_dssp EECSEEEECSCEEESCGGGTTTSCBCTTSCBCCBTTT
T ss_pred EEcCEEEEccCCCCChHHHhhhcccCCCccEecCCCC
Confidence 99999999999999963 2 12556666677777653
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=211.62 Aligned_cols=240 Identities=20% Similarity=0.238 Sum_probs=169.6
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCC-------CCCCc--chhHHHHHHHHhhcCCCcEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGV-------APDHP--EVKNVINTFTKTGDNPRVNF 83 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~-------~p~~~--~~~~~~~~~~~~~~~~~i~~ 83 (388)
.++|+|||||+||+++|..|++ .|++|+|||+.+.+||.|.+.. .|.++ ...++..++.+.+.++++++
T Consensus 7 ~~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (332)
T 3lzw_A 7 VYDITIIGGGPVGLFTAFYGGM--RQASVKIIESLPQLGGQLSALYPEKYIYDVAGFPKIRAQELINNLKEQMAKFDQTI 84 (332)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCHHHHHHCTTSEECCSTTCSSEEHHHHHHHHHHHHTTSCCEE
T ss_pred cceEEEECCCHHHHHHHHHHHH--CCCCEEEEEcCCCCCceehhcCCCceEeccCCCCCCCHHHHHHHHHHHHHHhCCcE
Confidence 4799999999999999999999 8999999999999998884311 13333 36788888889999899999
Q ss_pred EceEEEEE---------EeeecccccccCEEEEeeCC---CCCCCCCCCCCCC---CCeeecccccccccCCCCccccCc
Q psy4525 84 YGNICLGQ---------DISLGDLTNAYHAVVLTYGA---DNDKKLNIPGEDG---KNIISARSFVGWYNGLPEDASLDL 148 (388)
Q Consensus 84 ~~~~~v~~---------~~~~~~~~~~yd~lvlAtG~---~~~~~~~i~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~ 148 (388)
+.++.+.. .+...+.+..||+||+|||+ .+ +.+++||.+. ..++. .+. + ..
T Consensus 85 ~~~~~v~~i~~~~~~~~~v~~~~g~~~~d~vVlAtG~~~~~p-~~~~~~g~~~~~g~~~~~--~~~-------~----~~ 150 (332)
T 3lzw_A 85 CLEQAVESVEKQADGVFKLVTNEETHYSKTVIITAGNGAFKP-RKLELENAEQYEGKNLHY--FVD-------D----LQ 150 (332)
T ss_dssp ECSCCEEEEEECTTSCEEEEESSEEEEEEEEEECCTTSCCEE-CCCCCTTGGGGBTTTEES--SCS-------C----GG
T ss_pred EccCEEEEEEECCCCcEEEEECCCEEEeCEEEECCCCCcCCC-CCCCCCChhhccCceEEE--ecC-------C----HH
Confidence 97766532 22333333579999999998 55 5677887652 11211 111 1 12
Q ss_pred CCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceE
Q psy4525 149 SLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQT 228 (388)
Q Consensus 149 ~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~ 228 (388)
...+++++|||+|.+|+|+|..|. ....+|+++.|.+.+... ...+
T Consensus 151 ~~~~~~v~vvG~g~~~~e~a~~l~---------------------~~~~~v~~~~~~~~~~~~--~~~~----------- 196 (332)
T 3lzw_A 151 KFAGRRVAILGGGDSAVDWALMLE---------------------PIAKEVSIIHRRDKFRAH--EHSV----------- 196 (332)
T ss_dssp GGBTCEEEEECSSHHHHHHHHHHT---------------------TTBSEEEEECSSSSCSSC--HHHH-----------
T ss_pred HcCCCEEEEECCCHhHHHHHHHHH---------------------hhCCeEEEEEecCcCCcc--HHHH-----------
Confidence 234799999999999999999886 224579999998764211 1111
Q ss_pred EecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCce
Q psy4525 229 VFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDT 308 (388)
Q Consensus 229 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~ 308 (388)
..+ .+.||++++++.++++..++ .+..+.+.+. .++++
T Consensus 197 -------------------------~~l------------~~~gv~~~~~~~v~~i~~~~--~~~~v~~~~~---~~g~~ 234 (332)
T 3lzw_A 197 -------------------------ENL------------HASKVNVLTPFVPAELIGED--KIEQLVLEEV---KGDRK 234 (332)
T ss_dssp -------------------------HHH------------HHSSCEEETTEEEEEEECSS--SCCEEEEEET---TSCCE
T ss_pred -------------------------HHH------------hcCCeEEEeCceeeEEecCC--ceEEEEEEec---CCCce
Confidence 111 15799999999999998643 3566666543 14567
Q ss_pred eEEecceEEEccccCCccCC---CCCcccCCCccccCCCC
Q psy4525 309 ELIPSGIAFRSIGYQSRCVD---SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 309 ~~l~~D~Vi~a~G~~p~~~~---~~l~~~~~~gi~l~~~~ 345 (388)
++++||.||+|+|++|+... .++++ .++++.+|+..
T Consensus 235 ~~~~~D~vv~a~G~~p~~~~~~~~~~~~-~~g~i~vd~~~ 273 (332)
T 3lzw_A 235 EILEIDDLIVNYGFVSSLGPIKNWGLDI-EKNSIVVKSTM 273 (332)
T ss_dssp EEEECSEEEECCCEECCCGGGGGSSCCE-ETTEEECCTTS
T ss_pred EEEECCEEEEeeccCCCchHHhhcCccc-cCCeEEeCCCC
Confidence 88999999999999998632 35555 35667777643
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.9e-26 Score=223.93 Aligned_cols=251 Identities=14% Similarity=0.168 Sum_probs=169.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCc---------------------------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHP--------------------------- 63 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~--------------------------- 63 (388)
..++|+||||||||+++|..|++ .|.+|+|||+++.+||.| ++|+.|...
T Consensus 5 ~~~dvvIIGgG~aGl~aA~~l~~--~g~~V~liE~~~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~g~~~~~~~ 82 (474)
T 1zmd_A 5 IDADVTVIGSGPGGYVAAIKAAQ--LGFKTVCIEKNETLGGTCLNVGCIPSKALLNNSHYYHMAHGTDFASRGIEMSEVR 82 (474)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHSSHHHHTTEEESCEE
T ss_pred CCCCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCcCCcccccCccchHHHHHHHHHHHHhhhhhHhhCccccCCCc
Confidence 34799999999999999999999 799999999998899887 334433211
Q ss_pred -chhHH-----------HHHHHHhhcCCCcEEEceEEEEE-----Eeeecc---cccccCEEEEeeCCCCCCCCCCCCCC
Q psy4525 64 -EVKNV-----------INTFTKTGDNPRVNFYGNICLGQ-----DISLGD---LTNAYHAVVLTYGADNDKKLNIPGED 123 (388)
Q Consensus 64 -~~~~~-----------~~~~~~~~~~~~i~~~~~~~v~~-----~~~~~~---~~~~yd~lvlAtG~~~~~~~~i~g~~ 123 (388)
....+ ...+.+.+++.+++++.++.+.. .+...+ ....||+||+|||+.+ +.|+++|.+
T Consensus 83 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~gg~~~~~~d~lViAtGs~p-~~p~i~g~~ 161 (474)
T 1zmd_A 83 LNLDKMMEQKSTAVKALTGGIAHLFKQNKVVHVNGYGKITGKNQVTATKADGGTQVIDTKNILIATGSEV-TPFPGITID 161 (474)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEEEETTEEEEECTTSCEEEEEEEEEEECCCEEE-CCCTTCCCC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEecCCCcEEEEeCEEEECCCCCC-CCCCCCCCC
Confidence 01111 11224555667899887765432 133322 2348999999999987 577788876
Q ss_pred CCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEe
Q psy4525 124 GKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVG 203 (388)
Q Consensus 124 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~ 203 (388)
..++++..++... ...+++++|||+|++|+|+|..|. +.+ .+|+++.
T Consensus 162 ~~~v~t~~~~~~~------------~~~~~~vvViGgG~~g~E~A~~l~--------------------~~g-~~Vtlv~ 208 (474)
T 1zmd_A 162 EDTIVSSTGALSL------------KKVPEKMVVIGAGVIGVELGSVWQ--------------------RLG-ADVTAVE 208 (474)
T ss_dssp SSSEECHHHHTTC------------SSCCSEEEEECCSHHHHHHHHHHH--------------------HTT-CEEEEEC
T ss_pred cCcEEcHHHHhhc------------cccCceEEEECCCHHHHHHHHHHH--------------------HcC-CEEEEEe
Confidence 5567776655421 113689999999999999999776 233 5799999
Q ss_pred ecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCccee
Q psy4525 204 RRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTE 283 (388)
Q Consensus 204 r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~ 283 (388)
|.+.+.....++++. +.+.+.+. +.||++++++.+++
T Consensus 209 ~~~~~l~~~~~~~~~-------------------------------~~l~~~l~------------~~Gv~i~~~~~v~~ 245 (474)
T 1zmd_A 209 FLGHVGGVGIDMEIS-------------------------------KNFQRILQ------------KQGFKFKLNTKVTG 245 (474)
T ss_dssp SSSSSSCSSCCHHHH-------------------------------HHHHHHHH------------HTTCEEECSEEEEE
T ss_pred ccCccCCcccCHHHH-------------------------------HHHHHHHH------------HCCCEEEeCceEEE
Confidence 998764411112221 12222222 57999999999999
Q ss_pred eeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 284 FKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 284 i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
+..++++.+ .+.+.+ ..++++++++||.||+|+|++||+.. .++++++++.+.+|+..
T Consensus 246 i~~~~~~~~-~v~~~~---~~~~~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~ 308 (474)
T 1zmd_A 246 ATKKSDGKI-DVSIEA---ASGGKAEVITCDVLLVCIGRRPFTKNLGLEELGIELDPRGRIPVNTRF 308 (474)
T ss_dssp EEECTTSCE-EEEEEE---TTSCCCEEEEESEEEECSCEEECCTTSSHHHHTCCCCTTSCCCCCTTC
T ss_pred EEEcCCceE-EEEEEe---cCCCCceEEEcCEEEECcCCCcCCCcCCchhcCCccCCCCCEEECcCC
Confidence 987543322 333221 01356678999999999999999742 34666655558887654
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-25 Score=208.31 Aligned_cols=241 Identities=18% Similarity=0.192 Sum_probs=168.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCC----CCCC--cchhHHHHHHHHhhcCCCcEEEce
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGV----APDH--PEVKNVINTFTKTGDNPRVNFYGN 86 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~----~p~~--~~~~~~~~~~~~~~~~~~i~~~~~ 86 (388)
.++|+|||||+||+++|..|++ .|.+|+|||+. +||.|.+.. .|.+ ....++..++.+.+.+++++++..
T Consensus 15 ~~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 90 (323)
T 3f8d_A 15 KFDVIIVGLGPAAYGAALYSAR--YMLKTLVIGET--PGGQLTEAGIVDDYLGLIEIQASDMIKVFNKHIEKYEVPVLLD 90 (323)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESS--TTGGGGGCCEECCSTTSTTEEHHHHHHHHHHHHHTTTCCEEES
T ss_pred ccCEEEECccHHHHHHHHHHHH--CCCcEEEEecc--CCCeecccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEEEE
Confidence 4799999999999999999999 89999999998 888875411 1333 245778888888888889888774
Q ss_pred EEEEEE-------eeecc-cccccCEEEEeeCCCCCCCCCCCCCCC---CCeeecccccccccCCCCccccCcCCCCCeE
Q psy4525 87 ICLGQD-------ISLGD-LTNAYHAVVLTYGADNDKKLNIPGEDG---KNIISARSFVGWYNGLPEDASLDLSLDCEEA 155 (388)
Q Consensus 87 ~~v~~~-------~~~~~-~~~~yd~lvlAtG~~~~~~~~i~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v 155 (388)
.....+ +...+ ....||+||+|||+.+ +.+++||.+. +++....... .....++++
T Consensus 91 ~v~~i~~~~~~~~v~~~~g~~~~~d~lvlAtG~~~-~~~~i~g~~~~~~~~~~~~~~~~------------~~~~~~~~v 157 (323)
T 3f8d_A 91 IVEKIENRGDEFVVKTKRKGEFKADSVILGIGVKR-RKLGVPGEQEFAGRGISYCSVAD------------APLFKNRVV 157 (323)
T ss_dssp CEEEEEEC--CEEEEESSSCEEEEEEEEECCCCEE-CCCCCTTTTTTBTTTEESCHHHH------------GGGGTTCEE
T ss_pred EEEEEEecCCEEEEEECCCCEEEcCEEEECcCCCC-ccCCCCchhhhcCCceEEeccCC------------HhHcCCCEE
Confidence 333221 33333 2347999999999987 5778888653 3332211100 123357999
Q ss_pred EEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEeccccc
Q psy4525 156 TILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQL 235 (388)
Q Consensus 156 vVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~ 235 (388)
+|||+|.+|+|+|..|. +. ..+|+++.|++.+... +
T Consensus 158 ~vvG~G~~~~e~a~~l~--------------------~~-g~~v~~~~~~~~~~~~---~-------------------- 193 (323)
T 3f8d_A 158 AVIGGGDSALEGAEILS--------------------SY-STKVYLIHRRDTFKAQ---P-------------------- 193 (323)
T ss_dssp EEECCSHHHHHHHHHHH--------------------HH-SSEEEEECSSSSCCSC---H--------------------
T ss_pred EEECCCHHHHHHHHHHH--------------------Hh-CCeEEEEEeCCCCCcC---H--------------------
Confidence 99999999999999876 12 3579999998764321 0
Q ss_pred ccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecce
Q psy4525 236 CGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGI 315 (388)
Q Consensus 236 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~ 315 (388)
.+.+.+. ...||++++++.++++..+ +.+..+.+.+. .+++..++++|.
T Consensus 194 ---------------~~~~~~~-----------~~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~---~~g~~~~~~~D~ 242 (323)
T 3f8d_A 194 ---------------IYVETVK-----------KKPNVEFVLNSVVKEIKGD--KVVKQVVVENL---KTGEIKELNVNG 242 (323)
T ss_dssp ---------------HHHHHHH-----------TCTTEEEECSEEEEEEEES--SSEEEEEEEET---TTCCEEEEECSE
T ss_pred ---------------HHHHHHH-----------hCCCcEEEeCCEEEEEecc--CceeEEEEEEC---CCCceEEEEcCE
Confidence 1111111 1459999999999999864 56667776431 124445899999
Q ss_pred EEEccccCCccC---CCCCcccCCCccccCCCC
Q psy4525 316 AFRSIGYQSRCV---DSDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 316 Vi~a~G~~p~~~---~~~l~~~~~~gi~l~~~~ 345 (388)
||+|+|++|+.. ..++++++.+++.+|+..
T Consensus 243 vv~a~G~~p~~~~~~~~g~~~~~~g~i~vd~~~ 275 (323)
T 3f8d_A 243 VFIEIGFDPPTDFAKSNGIETDTNGYIKVDEWM 275 (323)
T ss_dssp EEECCCEECCHHHHHHTTCCBCTTSSBCCCTTC
T ss_pred EEEEECCCCChhHHhhcCeeecCCCcEecCCCc
Confidence 999999999942 146777777778887654
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.6e-26 Score=222.63 Aligned_cols=250 Identities=14% Similarity=0.111 Sum_probs=168.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCc--EEEEcCCCCCCCc---eeeCCCCCCcchhHHHHHHHHhhcCCCcEEEce
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQST--VDIYEKLPVPFGL---VRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGN 86 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~--v~lie~~~~~gg~---~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~ 86 (388)
..++|+|||||+||+++|..|++ .|.+ |++||+++.++.. +............++.....+++.+.+++++.+
T Consensus 8 ~~~~vvIIGaG~aGl~aA~~L~~--~g~~~~V~lie~~~~~~y~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 85 (415)
T 3lxd_A 8 ERADVVIVGAGHGGAQAAIALRQ--NGFEGRVLVIGREPEIPYERPPLSKEYLAREKTFERICIRPAQFWEDKAVEMKLG 85 (415)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHH--TTCCSCEEEEESSSSCCBCSGGGGTTTTTTSSCSGGGBSSCHHHHHHTTEEEEET
T ss_pred CCCcEEEECChHHHHHHHHHHHc--cCcCCCEEEEecCCCCCcCcccCCHHHHcCCCCHHHhccCCHHHHHHCCcEEEeC
Confidence 45799999999999999999999 6766 9999998765321 111111111122223223344455678998887
Q ss_pred EEEEE------Eeeeccc-ccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCC-CCeEEEE
Q psy4525 87 ICLGQ------DISLGDL-TNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLD-CEEATIL 158 (388)
Q Consensus 87 ~~v~~------~~~~~~~-~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~vvVI 158 (388)
+.+.. .+.+.+. ...||+||+|||+.+ +.+++||.+.++++..+....... .. ..... +++++||
T Consensus 86 ~~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~~-~~~~i~g~~~~~v~~~~~~~d~~~----l~--~~~~~~~~~vvVi 158 (415)
T 3lxd_A 86 AEVVSLDPAAHTVKLGDGSAIEYGKLIWATGGDP-RRLSCVGADLAGVHAVRTKEDADR----LM--AELDAGAKNAVVI 158 (415)
T ss_dssp CCEEEEETTTTEEEETTSCEEEEEEEEECCCEEC-CCCBTTSSCCBTEECCCSHHHHHH----HH--HHHHTTCCEEEEE
T ss_pred CEEEEEECCCCEEEECCCCEEEeeEEEEccCCcc-CCCCCCCccccCEEEEcCHHHHHH----HH--HHhhhcCCeEEEE
Confidence 55432 2444444 348999999999987 588899988888876544332110 00 11112 7899999
Q ss_pred cCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccc
Q psy4525 159 GQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGV 238 (388)
Q Consensus 159 GgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~ 238 (388)
|+|++|+|+|..|. +.+ .+|+++.+.+.+.....++++.+
T Consensus 159 GgG~~g~e~A~~l~--------------------~~g-~~Vtvv~~~~~~l~~~~~~~~~~------------------- 198 (415)
T 3lxd_A 159 GGGYIGLEAAAVLT--------------------KFG-VNVTLLEALPRVLARVAGEALSE------------------- 198 (415)
T ss_dssp CCSHHHHHHHHHHH--------------------HTT-CEEEEEESSSSTTTTTSCHHHHH-------------------
T ss_pred CCCHHHHHHHHHHH--------------------hcC-CeEEEEecCCchhhhhcCHHHHH-------------------
Confidence 99999999999776 233 57999999987654333333221
Q ss_pred hhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEE
Q psy4525 239 HEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFR 318 (388)
Q Consensus 239 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~ 318 (388)
.+.+.+. +.||++++++.++++..+ ++++..+++ .++++++||.||+
T Consensus 199 ------------~l~~~l~------------~~GV~i~~~~~v~~i~~~-~~~v~~v~l--------~dG~~i~aD~Vv~ 245 (415)
T 3lxd_A 199 ------------FYQAEHR------------AHGVDLRTGAAMDCIEGD-GTKVTGVRM--------QDGSVIPADIVIV 245 (415)
T ss_dssp ------------HHHHHHH------------HTTCEEEETCCEEEEEES-SSBEEEEEE--------SSSCEEECSEEEE
T ss_pred ------------HHHHHHH------------hCCCEEEECCEEEEEEec-CCcEEEEEe--------CCCCEEEcCEEEE
Confidence 1222222 579999999999999874 467777765 3456899999999
Q ss_pred ccccCCccC---CCCCcccCCCccccCCCC
Q psy4525 319 SIGYQSRCV---DSDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 319 a~G~~p~~~---~~~l~~~~~~gi~l~~~~ 345 (388)
|+|++|++. ..+++.+ +|+.+|+..
T Consensus 246 a~G~~p~~~l~~~~gl~~~--~gi~vd~~~ 273 (415)
T 3lxd_A 246 GIGIVPCVGALISAGASGG--NGVDVDEFC 273 (415)
T ss_dssp CSCCEESCHHHHHTTCCCS--SSEECCTTC
T ss_pred CCCCccChHHHHhCCCCcC--CCEEECCCC
Confidence 999999973 1455555 578877643
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-25 Score=210.71 Aligned_cols=258 Identities=19% Similarity=0.221 Sum_probs=170.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeC----CCCCC---cchhHHHHHHHHhhcCCCcEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYG----VAPDH---PEVKNVINTFTKTGDNPRVNF 83 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g----~~p~~---~~~~~~~~~~~~~~~~~~i~~ 83 (388)
...++|+||||||||+++|..|++ .|.+|+|||+. .+||.|.+. ..|.+ ....++..++.+.+.+.++++
T Consensus 12 ~~~~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~ 88 (335)
T 2a87_A 12 HPVRDVIVIGSGPAGYTAALYAAR--AQLAPLVFEGT-SFGGALMTTTDVENYPGFRNGITGPELMDEMREQALRFGADL 88 (335)
T ss_dssp CCCEEEEEECCHHHHHHHHHHHHH--TTCCCEEECCS-SCSCGGGSCSCBCCSTTCTTCBCHHHHHHHHHHHHHHTTCEE
T ss_pred CCcCCEEEECCCHHHHHHHHHHHh--CCCeEEEEecC-CCCCceeccchhhhcCCCCCCCCHHHHHHHHHHHHHHcCCEE
Confidence 446899999999999999999999 89999999976 678776432 11332 235677777777788889999
Q ss_pred EceEEEEEE------e-eeccc-ccccCEEEEeeCCCCCCCCCCCCCCC---CCeeecccccccccCCCCccccCcCCCC
Q psy4525 84 YGNICLGQD------I-SLGDL-TNAYHAVVLTYGADNDKKLNIPGEDG---KNIISARSFVGWYNGLPEDASLDLSLDC 152 (388)
Q Consensus 84 ~~~~~v~~~------~-~~~~~-~~~yd~lvlAtG~~~~~~~~i~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (388)
+.++....+ + ...+. ...||+||+|||+.+ +.+++||.+. ..++...... .....+
T Consensus 89 ~~~~v~~i~~~~~~~v~~~~~g~~~~~d~lviAtG~~~-~~~~i~g~~~~~~~~~~~~~~~~------------~~~~~~ 155 (335)
T 2a87_A 89 RMEDVESVSLHGPLKSVVTADGQTHRARAVILAMGAAA-RYLQVPGEQELLGRGVSSCATCD------------GFFFRD 155 (335)
T ss_dssp ECCCEEEEECSSSSEEEEETTSCEEEEEEEEECCCEEE-CCCCCTHHHHTBTTTEESCHHHH------------GGGGTT
T ss_pred EEeeEEEEEeCCcEEEEEeCCCCEEEeCEEEECCCCCc-cCCCCCchHhccCCceEEeeccc------------hhhcCC
Confidence 887643322 2 33333 347999999999977 4677777431 2222211111 112357
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecc
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRN 232 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~ 232 (388)
++|+|||+|.+|+|+|..|+ ....+|+++.|++.+...
T Consensus 156 ~~v~ViG~G~~g~e~a~~l~---------------------~~g~~V~l~~~~~~~~~~--------------------- 193 (335)
T 2a87_A 156 QDIAVIGGGDSAMEEATFLT---------------------RFARSVTLVHRRDEFRAS--------------------- 193 (335)
T ss_dssp CEEEEECSSHHHHHHHHHHT---------------------TTCSEEEEECSSSSCSSC---------------------
T ss_pred CEEEEECCCHHHHHHHHHHH---------------------HhCCeEEEEEcCCcCCcc---------------------
Confidence 99999999999999999886 224589999998764211
Q ss_pred cccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEe
Q psy4525 233 EQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIP 312 (388)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~ 312 (388)
+.+.+.+. .+.||+++++..++++..+ +.+..+.+.+. ..++.++++
T Consensus 194 -----------------~~~~~~~~-----------~~~gV~v~~~~~v~~i~~~--~~~~~v~~~~~---~~g~~~~i~ 240 (335)
T 2a87_A 194 -----------------KIMLDRAR-----------NNDKIRFLTNHTVVAVDGD--TTVTGLRVRDT---NTGAETTLP 240 (335)
T ss_dssp -----------------TTHHHHHH-----------HCTTEEEECSEEEEEEECS--SSCCEEEEEEE---TTSCCEEEC
T ss_pred -----------------HHHHHHHh-----------ccCCcEEEeCceeEEEecC--CcEeEEEEEEc---CCCceEEee
Confidence 00010110 1579999999999999853 34555655421 134457899
Q ss_pred cceEEEccccCCccCC--CCCcccCCCccccCCCCCCeecchhhHHhHH
Q psy4525 313 SGIAFRSIGYQSRCVD--SDIPFNEKSCTVIPKEGVPVVTWEGWKAIDK 359 (388)
Q Consensus 313 ~D~Vi~a~G~~p~~~~--~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~ 359 (388)
||.||+|+|++|++.. .++.+++++.+.+|+.....-..+.|...|+
T Consensus 241 ~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~~~~t~~~~iya~GD~ 289 (335)
T 2a87_A 241 VTGVFVAIGHEPRSGLVREAIDVDPDGYVLVQGRTTSTSLPGVFAAGDL 289 (335)
T ss_dssp CSCEEECSCEEECCTTTBTTBCBCTTSCBCCSTTSSBCSSTTEEECGGG
T ss_pred cCEEEEccCCccChhHhhcccccCCCccEEeCCCCCccCCCCEEEeeec
Confidence 9999999999999743 3566665555666654222112244544444
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-25 Score=224.19 Aligned_cols=251 Identities=15% Similarity=0.221 Sum_probs=170.4
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceee-CCCCCC------------------------c-c
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY-GVAPDH------------------------P-E 64 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~-g~~p~~------------------------~-~ 64 (388)
...++|+|||||++|+++|..|++ .|.+|+|||+++.+||.|.+ ++.|.+ . .
T Consensus 41 ~~~~dVvIIGgG~aGl~aA~~l~~--~G~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~ 118 (523)
T 1mo9_A 41 PREYDAIFIGGGAAGRFGSAYLRA--MGGRQLIVDRWPFLGGSCPHNACVPHHLFSDCAAELMLARTFSGQYWFPDMTEK 118 (523)
T ss_dssp CSCBSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSSCHHHHHSHHHHHHHHHHHHHHHHHHHTTTSTTCCCCTTC
T ss_pred CCcCCEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCCCCCCcccccCcCchHHHHHHHHHHHHHhhhhhcCcHHHHHhh
Confidence 446899999999999999999999 89999999999878888732 332221 0 0
Q ss_pred ---hhHHHHHHH-------Hhh-----cCCCcEEE-ceEEEEE---EeeecccccccCEEEEeeCCCCCCCCCCCCCCCC
Q psy4525 65 ---VKNVINTFT-------KTG-----DNPRVNFY-GNICLGQ---DISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGK 125 (388)
Q Consensus 65 ---~~~~~~~~~-------~~~-----~~~~i~~~-~~~~v~~---~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~ 125 (388)
.+++...+. ..+ ++.+++++ .+..... .+.+......||+||+|||+.+ +.|++||.+.+
T Consensus 119 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~gv~~~~~~~v~~i~~~~v~~~g~~~~~d~lViATGs~p-~~p~i~G~~~~ 197 (523)
T 1mo9_A 119 VVGIKEVVDLFRAGRNGPHGIMNFQSKEQLNLEYILNCPAKVIDNHTVEAAGKVFKAKNLILAVGAGP-GTLDVPGVNAK 197 (523)
T ss_dssp CCCHHHHHHHHHHHTHHHHHHHHHHHHHTSCCCEEESSCCEEEETTEEEETTEEEEBSCEEECCCEEC-CCCCSTTTTSB
T ss_pred hhhHHHHHHHHHhhhhhhhhhhhhcccccCCcEEEEeeEEEEeeCCEEEECCEEEEeCEEEECCCCCC-CCCCCCCcccC
Confidence 233333332 344 66788877 4332211 2333333348999999999987 57789998777
Q ss_pred CeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeec
Q psy4525 126 NIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRR 205 (388)
Q Consensus 126 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~ 205 (388)
++++..++...+. ...+++++|||+|++|+|+|..|. +.+ .+|+++.+.
T Consensus 198 ~v~~~~~~~~~l~----------~~~g~~vvViGgG~~g~E~A~~l~--------------------~~G-~~Vtlv~~~ 246 (523)
T 1mo9_A 198 GVFDHATLVEELD----------YEPGSTVVVVGGSKTAVEYGCFFN--------------------ATG-RRTVMLVRT 246 (523)
T ss_dssp TEEEHHHHHHHCC----------SCCCSEEEEECCSHHHHHHHHHHH--------------------HTT-CEEEEECSS
T ss_pred cEeeHHHHHHHHH----------hcCCCeEEEECCCHHHHHHHHHHH--------------------HcC-CeEEEEEec
Confidence 7887776651111 122489999999999999999775 233 479999998
Q ss_pred CcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeee
Q psy4525 206 GALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFK 285 (388)
Q Consensus 206 ~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~ 285 (388)
+.+...+. +++. +.+.+.+. +.||++++++.++++.
T Consensus 247 ~~~l~~~~-~~~~-------------------------------~~l~~~l~------------~~GV~i~~~~~V~~i~ 282 (523)
T 1mo9_A 247 EPLKLIKD-NETR-------------------------------AYVLDRMK------------EQGMEIISGSNVTRIE 282 (523)
T ss_dssp CTTTTCCS-HHHH-------------------------------HHHHHHHH------------HTTCEEESSCEEEEEE
T ss_pred Cccccccc-HHHH-------------------------------HHHHHHHH------------hCCcEEEECCEEEEEE
Confidence 76543321 1211 12222222 5799999999999998
Q ss_pred eCCCCceeEEEEccCccccCCcee-EEecceEEEccccCCccC--C--CCCcccCCCccccCCCC
Q psy4525 286 LNDNGAITGINFANQQALVTEDTE-LIPSGIAFRSIGYQSRCV--D--SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 286 ~~~~~~v~~v~~~~~~~~~~~~~~-~l~~D~Vi~a~G~~p~~~--~--~~l~~~~~~gi~l~~~~ 345 (388)
.++++++.++.+ .+.+++ +++||.||+|+|++||+. . .++++++++.+.+|+..
T Consensus 283 ~~~~~~v~~~~v------~~~~G~~~i~aD~Vv~A~G~~p~~~~~l~~~gl~~~~~G~i~Vd~~~ 341 (523)
T 1mo9_A 283 EDANGRVQAVVA------MTPNGEMRIETDFVFLGLGEQPRSAELAKILGLDLGPKGEVLVNEYL 341 (523)
T ss_dssp ECTTSBEEEEEE------EETTEEEEEECSCEEECCCCEECCHHHHHHHTCCBCTTSCBCCCTTS
T ss_pred EcCCCceEEEEE------EECCCcEEEEcCEEEECcCCccCCccCHHHcCCccCCCCCEEECCCC
Confidence 754555533322 123455 899999999999999983 2 45677665558887653
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4e-25 Score=208.47 Aligned_cols=252 Identities=19% Similarity=0.202 Sum_probs=166.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcC----CCCCCCceeeC----CCCCC---cchhHHHHHHHHhhcCCCc
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEK----LPVPFGLVRYG----VAPDH---PEVKNVINTFTKTGDNPRV 81 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~----~~~~gg~~~~g----~~p~~---~~~~~~~~~~~~~~~~~~i 81 (388)
.++|+||||||+|+++|..|++ .|.+|+|||+ ...+||.+.+. ..|.+ ....++..++.+.+.+.++
T Consensus 8 ~~~vvIIG~G~aGl~~A~~l~~--~g~~v~lie~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~gv 85 (333)
T 1vdc_A 8 NTRLCIVGSGPAAHTAAIYAAR--AELKPLLFEGWMANDIAPGGQLTTTTDVENFPGFPEGILGVELTDKFRKQSERFGT 85 (333)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTCTTCEEHHHHHHHHHHHHHHTTC
T ss_pred CCCEEEECcCHHHHHHHHHHHH--CCCeEEEEeccCccccCCCceeeeccccccCCCCccCCCHHHHHHHHHHHHHHCCC
Confidence 4799999999999999999999 8999999998 55677766331 11322 2356777777778888899
Q ss_pred EEEceEEEEE-------EeeecccccccCEEEEeeCCCCCCCCCCCCCCC-CCeeecccccccccCCCCccccCcCCCCC
Q psy4525 82 NFYGNICLGQ-------DISLGDLTNAYHAVVLTYGADNDKKLNIPGEDG-KNIISARSFVGWYNGLPEDASLDLSLDCE 153 (388)
Q Consensus 82 ~~~~~~~v~~-------~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (388)
+++.++.... .+..+.....||+||+|||+.+ +.+++||.+. .+++....+.. ...+........++
T Consensus 86 ~~~~~~v~~i~~~~~~~~v~~~~~~~~~~~vv~A~G~~~-~~~~~~g~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 160 (333)
T 1vdc_A 86 TIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAVA-KRLSFVGSGEVLGGFWNRGISA----CAVCDGAAPIFRNK 160 (333)
T ss_dssp EEECCCCCEEECSSSSEEEECSSEEEEEEEEEECCCEEE-CCCCCBTCSSSSSCCBTTTEES----CHHHHTTSGGGTTS
T ss_pred EEEEeEEEEEEEcCCEEEEEECCcEEEcCEEEECCCCCc-CCCCCCCccccccccccCcEEE----eccCccchhhcCCC
Confidence 9887753222 1223222347999999999987 4777888653 22221111110 00000000113579
Q ss_pred eEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEeccc
Q psy4525 154 EATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNE 233 (388)
Q Consensus 154 ~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~ 233 (388)
+|+|||+|.+|+|+|..|. ....+|+++.|++.+... +
T Consensus 161 ~v~VvG~G~~g~e~A~~l~---------------------~~g~~V~lv~~~~~~~~~---~------------------ 198 (333)
T 1vdc_A 161 PLAVIGGGDSAMEEANFLT---------------------KYGSKVYIIHRRDAFRAS---K------------------ 198 (333)
T ss_dssp EEEEECCSHHHHHHHHHHT---------------------TTSSEEEEECSSSSCCSC---H------------------
T ss_pred eEEEECCChHHHHHHHHHH---------------------hcCCeEEEEecCCcCCcc---H------------------
Confidence 9999999999999999886 223589999998754211 0
Q ss_pred ccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCC-ceeEEEEccCccccCCceeEEe
Q psy4525 234 QLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNG-AITGINFANQQALVTEDTELIP 312 (388)
Q Consensus 234 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~-~v~~v~~~~~~~~~~~~~~~l~ 312 (388)
.+.+.+ ..+.||++++++.++++..++++ .+..+.+.+. ..++.++++
T Consensus 199 -----------------~~~~~~-----------~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~---~~g~~~~i~ 247 (333)
T 1vdc_A 199 -----------------IMQQRA-----------LSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNV---VTGDVSDLK 247 (333)
T ss_dssp -----------------HHHHHH-----------HTCTTEEEECSEEEEEEEESSSSSSEEEEEEEET---TTCCEEEEE
T ss_pred -----------------HHHHHH-----------HhCCCeeEecCCceEEEeCCCCccceeeEEEEec---CCCceEEEe
Confidence 111011 12579999999999999864321 6666766431 134457899
Q ss_pred cceEEEccccCCccCC--CCCcccCCCccccCCC
Q psy4525 313 SGIAFRSIGYQSRCVD--SDIPFNEKSCTVIPKE 344 (388)
Q Consensus 313 ~D~Vi~a~G~~p~~~~--~~l~~~~~~gi~l~~~ 344 (388)
||.||+|+|++|+... .++.+++++.+.+|+.
T Consensus 248 ~D~vi~a~G~~p~~~~~~~~l~~~~~G~i~vd~~ 281 (333)
T 1vdc_A 248 VSGLFFAIGHEPATKFLDGGVELDSDGYVVTKPG 281 (333)
T ss_dssp CSEEEECSCEEESCGGGTTSSCBCTTSCBCCCTT
T ss_pred cCEEEEEeCCccchHHhhccccccCCCCEEechh
Confidence 9999999999999742 3566665555666654
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-25 Score=221.71 Aligned_cols=247 Identities=12% Similarity=0.143 Sum_probs=166.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCc----------------------------
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHP---------------------------- 63 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~---------------------------- 63 (388)
.++|+||||||||+++|..|++ .|.+|+|||+.+.+||.| ++++.|...
T Consensus 2 ~~dvvIIGgG~aGl~aA~~l~~--~g~~V~lie~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~g~~~~~~~~~ 79 (468)
T 2qae_A 2 PYDVVVIGGGPGGYVASIKAAQ--LGMKTACVEKRGALGGTCLNVGCIPSKALLHATHLYHDAHANFARYGLMGGEGVTM 79 (468)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEECGGGCEE
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCcCCcCCCcCcHhHHHHHHHHHHHHHHHHHHHhcCcccCCCCcc
Confidence 4699999999999999999999 899999999998899876 334433211
Q ss_pred chhH-----------HHHHHHHhhcCCCcEEEceEEEEE-----Eeeeccc---ccccCEEEEeeCCCCCCCCCCCCCCC
Q psy4525 64 EVKN-----------VINTFTKTGDNPRVNFYGNICLGQ-----DISLGDL---TNAYHAVVLTYGADNDKKLNIPGEDG 124 (388)
Q Consensus 64 ~~~~-----------~~~~~~~~~~~~~i~~~~~~~v~~-----~~~~~~~---~~~yd~lvlAtG~~~~~~~~i~g~~~ 124 (388)
.... +...+.+.+++.+++++.++.+.. .+...++ ...||+||+|||+.+ +.|+++|.+.
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~~G~~~~~~~d~lviAtG~~p-~~p~~~g~~~ 158 (468)
T 2qae_A 80 DSAKMQQQKERAVKGLTGGVEYLFKKNKVTYYKGEGSFETAHSIRVNGLDGKQEMLETKKTIIATGSEP-TELPFLPFDE 158 (468)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEE-CCBTTBCCCS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEecCCceEEEEcCEEEECCCCCc-CCCCCCCCCc
Confidence 0111 111223455567888887765432 1322232 348999999999987 4677888766
Q ss_pred CCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEee
Q psy4525 125 KNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGR 204 (388)
Q Consensus 125 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r 204 (388)
+++++..++... ...+++++|||+|++|+|+|..|. +.+ .+|+++.|
T Consensus 159 ~~v~t~~~~~~~------------~~~~~~vvViGgG~~g~E~A~~l~--------------------~~g-~~Vtlv~~ 205 (468)
T 2qae_A 159 KVVLSSTGALAL------------PRVPKTMVVIGGGVIGLELGSVWA--------------------RLG-AEVTVVEF 205 (468)
T ss_dssp SSEECHHHHHTC------------SSCCSEEEEECCSHHHHHHHHHHH--------------------HTT-CEEEEECS
T ss_pred CceechHHHhhc------------ccCCceEEEECCCHHHHHHHHHHH--------------------HhC-CEEEEEec
Confidence 677777665521 123689999999999999999876 233 57999999
Q ss_pred cCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHH-HhhCCCCCCCCCCceeEEEEecCccee
Q psy4525 205 RGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELI-LKTSNPDESKSNCSKYFRPIFLRSPTE 283 (388)
Q Consensus 205 ~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~gv~~~~~~~~~~ 283 (388)
.+.+...+. +++ .+.+.+.+ . +.||++++++.+++
T Consensus 206 ~~~~l~~~d-~~~-------------------------------~~~l~~~l~~------------~~gv~i~~~~~v~~ 241 (468)
T 2qae_A 206 APRCAPTLD-EDV-------------------------------TNALVGALAK------------NEKMKFMTSTKVVG 241 (468)
T ss_dssp SSSSSTTSC-HHH-------------------------------HHHHHHHHHH------------HTCCEEECSCEEEE
T ss_pred CCcccccCC-HHH-------------------------------HHHHHHHHhh------------cCCcEEEeCCEEEE
Confidence 977543322 111 12222333 2 57999999999999
Q ss_pred eeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 284 FKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 284 i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
+..++++ ..+.+.+ ..++.++++||.||+|+|++||+.. .++++++++++.+|+..
T Consensus 242 i~~~~~~--~~v~~~~----~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~ 302 (468)
T 2qae_A 242 GTNNGDS--VSLEVEG----KNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHF 302 (468)
T ss_dssp EEECSSS--EEEEEEC----C---EEEEEESEEEECSCEEECCTTSCHHHHTCCBCTTSCBCCCTTS
T ss_pred EEEcCCe--EEEEEEc----CCCceEEEECCEEEECCCcccCCCCCCchhcCCccCCCCCEeECCCc
Confidence 9865422 2333321 0123368999999999999999742 34666655558887653
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-25 Score=208.07 Aligned_cols=244 Identities=17% Similarity=0.233 Sum_probs=166.1
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCC----CCCC---cchhHHHHHHHHhhcCCCcEEEc
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGV----APDH---PEVKNVINTFTKTGDNPRVNFYG 85 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~----~p~~---~~~~~~~~~~~~~~~~~~i~~~~ 85 (388)
.++|+||||||||+++|..|++ .|.+|++||+. .+||.+.+.. .|.+ ....++..++.+.+.+.+++++.
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (320)
T 1trb_A 5 HSKLLILGSGPAGYTAAVYAAR--ANLQPVLITGM-EKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIF 81 (320)
T ss_dssp EEEEEEECCSHHHHHHHHHHHT--TTCCCEEECCS-STTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEEC
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCcEEEEccC-CCCceEecchhhhhCCCCCCCCCHHHHHHHHHHHHHHCCCEEEE
Confidence 4799999999999999999999 89999999975 6777664311 1332 24567777777788888999988
Q ss_pred eEEEEEE-----ee-ecc-cccccCEEEEeeCCCCCCCCCCCCCCC---CCeeecccccccccCCCCccccCcCCCCCeE
Q psy4525 86 NICLGQD-----IS-LGD-LTNAYHAVVLTYGADNDKKLNIPGEDG---KNIISARSFVGWYNGLPEDASLDLSLDCEEA 155 (388)
Q Consensus 86 ~~~v~~~-----~~-~~~-~~~~yd~lvlAtG~~~~~~~~i~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v 155 (388)
++....+ ++ ..+ ....||+||+|||+.+ +.+++||.+. .++.+..... .....+++|
T Consensus 82 ~~v~~i~~~~~~~~v~~~~~~~~~~~lv~AtG~~~-~~~~~~g~~~~~~~~~~~~~~~~------------~~~~~~~~v 148 (320)
T 1trb_A 82 DHINKVDLQNRPFRLNGDNGEYTCDALIIATGASA-RYLGLPSEEAFKGRGVSACATSD------------GFFYRNQKV 148 (320)
T ss_dssp CCEEEEECSSSSEEEEESSCEEEEEEEEECCCEEE-CCCCCHHHHHTBTTTEESCHHHH------------GGGGTTSEE
T ss_pred eeeeEEEecCCEEEEEeCCCEEEcCEEEECCCCCc-CCCCCCChHHhCCceeEecccCC------------ccccCCCeE
Confidence 7643322 11 222 2347999999999877 4667776431 2222211111 112357899
Q ss_pred EEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEeccccc
Q psy4525 156 TILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQL 235 (388)
Q Consensus 156 vVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~ 235 (388)
+|||+|.+|+|+|..|. ....+|+++.|++.+... +.
T Consensus 149 ~ViG~G~~g~e~A~~l~---------------------~~g~~Vtlv~~~~~~~~~---~~------------------- 185 (320)
T 1trb_A 149 AVIGGGNTAVEEALYLS---------------------NIASEVHLIHRRDGFRAE---KI------------------- 185 (320)
T ss_dssp EEECSSHHHHHHHHHHT---------------------TTSSEEEEECSSSSCCCC---HH-------------------
T ss_pred EEECCCHHHHHHHHHHH---------------------hcCCeEEEEEeCCccccC---HH-------------------
Confidence 99999999999999886 223589999998754211 11
Q ss_pred ccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccC-CceeEEecc
Q psy4525 236 CGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVT-EDTELIPSG 314 (388)
Q Consensus 236 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~-~~~~~l~~D 314 (388)
..+++.+.+. +.||++++++.++++..++ +.+.++.+.+.. + ++.++++||
T Consensus 186 ------------~~~~l~~~l~------------~~gv~i~~~~~v~~i~~~~-~~v~~v~~~~~~---~~g~~~~i~~D 237 (320)
T 1trb_A 186 ------------LIKRLMDKVE------------NGNIILHTNRTLEEVTGDQ-MGVTGVRLRDTQ---NSDNIESLDVA 237 (320)
T ss_dssp ------------HHHHHHHHHH------------TSSEEEECSCEEEEEEECS-SSEEEEEEECCT---TCCCCEEEECS
T ss_pred ------------HHHHHHHhcc------------cCCeEEEcCceeEEEEcCC-CceEEEEEEecc---CCCceEEEEcC
Confidence 1122222222 5799999999999998653 467777764310 2 445789999
Q ss_pred eEEEccccCCccCC--CCCcccCCCccccCCC
Q psy4525 315 IAFRSIGYQSRCVD--SDIPFNEKSCTVIPKE 344 (388)
Q Consensus 315 ~Vi~a~G~~p~~~~--~~l~~~~~~gi~l~~~ 344 (388)
.||+|+|++|++.. .+++++ ++.+.+|..
T Consensus 238 ~vv~a~G~~p~~~~~~~~l~~~-~G~i~vd~~ 268 (320)
T 1trb_A 238 GLFVAIGHSPNTAIFEGQLELE-NGYIKVQSG 268 (320)
T ss_dssp EEEECSCEEESCGGGTTTSCEE-TTEECCCCS
T ss_pred EEEEEeCCCCChHHhccccccc-CceEEECCC
Confidence 99999999998742 356777 555666654
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.7e-25 Score=204.77 Aligned_cols=255 Identities=20% Similarity=0.206 Sum_probs=169.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeC--C--CCCC--cchhHHHHHHHHhhcCCCcEEEce
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYG--V--APDH--PEVKNVINTFTKTGDNPRVNFYGN 86 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g--~--~p~~--~~~~~~~~~~~~~~~~~~i~~~~~ 86 (388)
.++|+||||||||+++|..|++ .|.+|+|||+. .+||.+.+. . .|.+ ....++..++.+.+.+.+++++..
T Consensus 16 ~~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 92 (319)
T 3cty_A 16 DFDVVIVGAGAAGFSAAVYAAR--SGFSVAILDKA-VAGGLTAEAPLVENYLGFKSIVGSELAKLFADHAANYAKIREGV 92 (319)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-STTGGGGGCSCBCCBTTBSSBCHHHHHHHHHHHHHTTSEEEETC
T ss_pred CCcEEEECcCHHHHHHHHHHHh--CCCcEEEEeCC-CCCccccccchhhhcCCCcccCHHHHHHHHHHHHHHcCCEEEEe
Confidence 4799999999999999999999 89999999994 677776331 1 1322 234567777778888889988774
Q ss_pred EEEEEE-------eeecccccccCEEEEeeCCCCCCCCCCCCCCC---CCeeecccccccccCCCCccccCcCCCCCeEE
Q psy4525 87 ICLGQD-------ISLGDLTNAYHAVVLTYGADNDKKLNIPGEDG---KNIISARSFVGWYNGLPEDASLDLSLDCEEAT 156 (388)
Q Consensus 87 ~~v~~~-------~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vv 156 (388)
.....+ +..++....||+||+|||+.+ +.+++||.+. .+++...... .....+++++
T Consensus 93 ~v~~i~~~~~~~~v~~~~~~~~~~~li~AtG~~~-~~~~i~g~~~~~~~~~~~~~~~~------------~~~~~~~~v~ 159 (319)
T 3cty_A 93 EVRSIKKTQGGFDIETNDDTYHAKYVIITTGTTH-KHLGVKGESEYFGKGTSYCSTCD------------GYLFKGKRVV 159 (319)
T ss_dssp CEEEEEEETTEEEEEESSSEEEEEEEEECCCEEE-CCCCCBTTTTTBTTTEESCHHHH------------GGGGBTSEEE
T ss_pred eEEEEEEeCCEEEEEECCCEEEeCEEEECCCCCc-ccCCCCChHHhCCceEEEEEecc------------hhhcCCCeEE
Confidence 333221 223223347999999999877 5777887642 2232111110 1123468999
Q ss_pred EEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccc
Q psy4525 157 ILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLC 236 (388)
Q Consensus 157 VIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~ 236 (388)
|||+|.+|+|+|..|. ....+|++++|++.+... +
T Consensus 160 viG~G~~g~e~a~~l~---------------------~~g~~V~~i~~~~~~~~~---~--------------------- 194 (319)
T 3cty_A 160 TIGGGNSGAIAAISMS---------------------EYVKNVTIIEYMPKYMCE---N--------------------- 194 (319)
T ss_dssp EECCSHHHHHHHHHHT---------------------TTBSEEEEECSSSSCCSC---H---------------------
T ss_pred EECCCHHHHHHHHHHH---------------------hhCCcEEEEEcCCccCCC---H---------------------
Confidence 9999999999999886 234689999988654211 1
Q ss_pred cchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceE
Q psy4525 237 GVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIA 316 (388)
Q Consensus 237 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~V 316 (388)
.+.+.+. +.||++++++.++++..+ ++++..+.+.+. ..++..+++||.|
T Consensus 195 --------------~l~~~l~------------~~gv~i~~~~~v~~i~~~-~~~v~~v~~~~~---~~g~~~~i~~D~v 244 (319)
T 3cty_A 195 --------------AYVQEIK------------KRNIPYIMNAQVTEIVGD-GKKVTGVKYKDR---TTGEEKLIETDGV 244 (319)
T ss_dssp --------------HHHHHHH------------HTTCCEECSEEEEEEEES-SSSEEEEEEEET---TTCCEEEECCSEE
T ss_pred --------------HHHHHHh------------cCCcEEEcCCeEEEEecC-CceEEEEEEEEc---CCCceEEEecCEE
Confidence 1111121 468999999999999864 355667766421 1234457999999
Q ss_pred EEccccCCccCC---CCCcccCCCccccCCCCCCeecchhhHHhHH
Q psy4525 317 FRSIGYQSRCVD---SDIPFNEKSCTVIPKEGVPVVTWEGWKAIDK 359 (388)
Q Consensus 317 i~a~G~~p~~~~---~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~ 359 (388)
|+|+|++||... .++++++++++.+|+... .-..+.|...|+
T Consensus 245 i~a~G~~p~~~~l~~~gl~~~~~g~i~vd~~~~-t~~~~vya~GD~ 289 (319)
T 3cty_A 245 FIYVGLIPQTSFLKDSGVKLDERGYIVVDSRQR-TSVPGVYAAGDV 289 (319)
T ss_dssp EECCCEEECCGGGTTSCCCBCTTSCBCCCTTCB-CSSTTEEECSTT
T ss_pred EEeeCCccChHHHhhccccccCCccEeCCCCCc-cCCCCEEEeecc
Confidence 999999999631 346666666777776532 212244544444
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-25 Score=220.55 Aligned_cols=250 Identities=14% Similarity=0.157 Sum_probs=161.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCC----cchhHHHHHHHHhh-cCCCcEEEceE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDH----PEVKNVINTFTKTG-DNPRVNFYGNI 87 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~----~~~~~~~~~~~~~~-~~~~i~~~~~~ 87 (388)
+++|+|||||+||+++|..|++..++.+|+|||+++.+++. .++. |.+ ....++..+..+.+ ++.+++++.++
T Consensus 3 ~~~VvIIGgG~aGl~aA~~L~~~~~~~~V~vie~~~~~~~~-~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~~~ 80 (449)
T 3kd9_A 3 LKKVVIIGGGAAGMSAASRVKRLKPEWDVKVFEATEWVSHA-PCGI-PYVVEGLSTPDKLMYYPPEVFIKKRGIDLHLNA 80 (449)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSSCCC--------------------------CTHHHHTTCEEETTC
T ss_pred cCcEEEECCcHHHHHHHHHHHHhCcCCCEEEEECCCccccC-CcCC-ccccCCCCCHHHhhhcCHHHHHHhcCcEEEecC
Confidence 47999999999999999999995558999999999876532 2222 222 12233333333333 56789999886
Q ss_pred EEEE------Eeeeccc--ccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEc
Q psy4525 88 CLGQ------DISLGDL--TNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILG 159 (388)
Q Consensus 88 ~v~~------~~~~~~~--~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG 159 (388)
.+.. .+...+. ...||+||+|||+.+ +.|++||.+.+++++......... .........+++++|||
T Consensus 81 ~v~~i~~~~~~v~~~~g~~~~~~d~lviAtG~~p-~~p~i~G~~~~~v~~~~~~~~~~~----~~~~~~~~~~~~vvViG 155 (449)
T 3kd9_A 81 EVIEVDTGYVRVRENGGEKSYEWDYLVFANGASP-QVPAIEGVNLKGVFTADLPPDALA----IREYMEKYKVENVVIIG 155 (449)
T ss_dssp EEEEECSSEEEEECSSSEEEEECSEEEECCCEEE-CCCSCBTTTSTTEECSCSTHHHHH----HHHHHSSSCCCEEEEEC
T ss_pred EEEEEecCCCEEEECCceEEEEcCEEEECCCCCC-CCCCCCCCCCCCEEEeCCHHHHHH----HHHHHHhcCCCeEEEEC
Confidence 5531 2333333 347999999999987 578899988888876654432111 00001123578999999
Q ss_pred CChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccch
Q psy4525 160 QGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVH 239 (388)
Q Consensus 160 gG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~ 239 (388)
+|++|+|+|..|. +.+ .+|+++.|.+.+.....++++.+
T Consensus 156 gG~~g~E~A~~l~--------------------~~g-~~Vtlv~~~~~~l~~~~~~~~~~-------------------- 194 (449)
T 3kd9_A 156 GGYIGIEMAEAFA--------------------AQG-KNVTMIVRGERVLRRSFDKEVTD-------------------- 194 (449)
T ss_dssp CSHHHHHHHHHHH--------------------HTT-CEEEEEESSSSTTTTTSCHHHHH--------------------
T ss_pred CCHHHHHHHHHHH--------------------hCC-CeEEEEEcCCccchhhcCHHHHH--------------------
Confidence 9999999999876 233 57999999987654422222211
Q ss_pred hhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEc
Q psy4525 240 EASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRS 319 (388)
Q Consensus 240 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a 319 (388)
.+.+.+ .+. |++++++.+.++..+ +.+..+. .++++++||.||+|
T Consensus 195 -----------~l~~~l------------~~~-v~i~~~~~v~~i~~~--~~v~~v~---------~~g~~i~~D~Vv~a 239 (449)
T 3kd9_A 195 -----------ILEEKL------------KKH-VNLRLQEITMKIEGE--ERVEKVV---------TDAGEYKAELVILA 239 (449)
T ss_dssp -----------HHHHHH------------TTT-SEEEESCCEEEEECS--SSCCEEE---------ETTEEEECSEEEEC
T ss_pred -----------HHHHHH------------HhC-cEEEeCCeEEEEecc--CcEEEEE---------eCCCEEECCEEEEe
Confidence 111222 145 999999999999753 3443332 23358999999999
Q ss_pred cccCCccC---CCCCcccCCCccccCCCC
Q psy4525 320 IGYQSRCV---DSDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 320 ~G~~p~~~---~~~l~~~~~~gi~l~~~~ 345 (388)
+|++|++. ..++++++++++.+|+..
T Consensus 240 ~G~~p~~~l~~~~gl~~~~~G~i~vd~~~ 268 (449)
T 3kd9_A 240 TGIKPNIELAKQLGVRIGETGAIWTNEKM 268 (449)
T ss_dssp SCEEECCHHHHHTTCCBCTTSSBCCCTTC
T ss_pred eCCccCHHHHHhCCccCCCCCCEEECCCC
Confidence 99999973 246777776678877643
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-24 Score=202.36 Aligned_cols=241 Identities=19% Similarity=0.226 Sum_probs=165.7
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceee--CCC--C--CCcchhHHHHHHHHhhcCCCcEEEceE
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY--GVA--P--DHPEVKNVINTFTKTGDNPRVNFYGNI 87 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~--g~~--p--~~~~~~~~~~~~~~~~~~~~i~~~~~~ 87 (388)
++|+||||||||+++|..|++ .|.+|+|||+ .+||.|.. +.. + .+....++..++.+.+++.+++++.++
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~--~g~~v~li~~--~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 77 (310)
T 1fl2_A 2 YDVLIVGSGPAGAAAAIYSAR--KGIRTGLMGE--RFGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQ 77 (310)
T ss_dssp EEEEEECCSHHHHHHHHHHHT--TTCCEEEECS--STTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSC
T ss_pred CCEEEECcCHHHHHHHHHHHH--CCCcEEEEeC--CCCceeccccccccccCcCCCCHHHHHHHHHHHHHHcCCeEEccC
Confidence 689999999999999999999 8999999986 46777642 220 1 122356777788888888899998875
Q ss_pred EEE-E----------Eeeeccc-ccccCEEEEeeCCCCCCCCCCCCCCC---CCeeecccccccccCCCCccccCcCCCC
Q psy4525 88 CLG-Q----------DISLGDL-TNAYHAVVLTYGADNDKKLNIPGEDG---KNIISARSFVGWYNGLPEDASLDLSLDC 152 (388)
Q Consensus 88 ~v~-~----------~~~~~~~-~~~yd~lvlAtG~~~~~~~~i~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (388)
.+. . .+..++. ...||+||+|||+.+ +.+++||.+. ..++...... .....+
T Consensus 78 ~v~~i~~~~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~-~~~~~~g~~~~~~~~~~~~~~~~------------~~~~~~ 144 (310)
T 1fl2_A 78 SASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKW-RNMNVPGEDQYRTKGVTYCPHCD------------GPLFKG 144 (310)
T ss_dssp CEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEE-CCCCCTTTTTTBTTTEESCHHHH------------GGGGBT
T ss_pred EEEEEEecccCCceEEEEECCCCEEEeCEEEECcCCCc-CCCCCCChhhcccceeEEeccCc------------HhhcCC
Confidence 432 1 2233333 347999999999987 4677888642 2222111110 122347
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecc
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRN 232 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~ 232 (388)
++|+|||+|++|+|+|..|+ ....+|+++.|++.+. +. +
T Consensus 145 ~~v~VvG~G~~g~e~A~~l~---------------------~~g~~Vtlv~~~~~~~--~~-~----------------- 183 (310)
T 1fl2_A 145 KRVAVIGGGNSGVEAAIDLA---------------------GIVEHVTLLEFAPEMK--AD-Q----------------- 183 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHH---------------------TTBSEEEEECSSSSCC--SC-H-----------------
T ss_pred CEEEEECCCHHHHHHHHHHH---------------------HhCCEEEEEEeCcccC--cc-H-----------------
Confidence 89999999999999999886 3346899999987642 11 1
Q ss_pred cccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEe
Q psy4525 233 EQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIP 312 (388)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~ 312 (388)
.+.+.+. ...||++++++.++++..+ ++++..+++.+. .+++..+++
T Consensus 184 ------------------~~~~~l~-----------~~~gv~v~~~~~v~~i~~~-~~~v~~v~~~~~---~~g~~~~i~ 230 (310)
T 1fl2_A 184 ------------------VLQDKLR-----------SLKNVDIILNAQTTEVKGD-GSKVVGLEYRDR---VSGDIHNIE 230 (310)
T ss_dssp ------------------HHHHHHH-----------TCTTEEEESSEEEEEEEES-SSSEEEEEEEET---TTCCEEEEE
T ss_pred ------------------HHHHHHh-----------hCCCeEEecCCceEEEEcC-CCcEEEEEEEEC---CCCcEEEEE
Confidence 1111111 1268999999999999864 367777776542 134446899
Q ss_pred cceEEEccccCCccC--CCCCcccCCCccccCCCC
Q psy4525 313 SGIAFRSIGYQSRCV--DSDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 313 ~D~Vi~a~G~~p~~~--~~~l~~~~~~gi~l~~~~ 345 (388)
+|.||+|+|++||+. ...+.+++.+++.+|+..
T Consensus 231 ~D~vi~a~G~~p~~~~l~~~l~~~~~g~i~vd~~~ 265 (310)
T 1fl2_A 231 LAGIFVQIGLLPNTNWLEGAVERNRMGEIIIDAKC 265 (310)
T ss_dssp CSEEEECSCEEESCGGGTTTSCBCTTSCBCCCTTC
T ss_pred cCEEEEeeCCccCchHHhccccccCCCcEEcCCCC
Confidence 999999999999862 223566666677777654
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=7.6e-25 Score=215.76 Aligned_cols=244 Identities=13% Similarity=0.209 Sum_probs=162.7
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCC--------------------------cch
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDH--------------------------PEV 65 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~--------------------------~~~ 65 (388)
.++|+||||||||+++|..|++ .|.+|+|||+. .+||.| ++++.|.. ...
T Consensus 3 ~~dvvIIGgG~aGl~aA~~l~~--~g~~V~lie~~-~~gG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 79 (455)
T 1ebd_A 3 ETETLVVGAGPGGYVAAIRAAQ--LGQKVTIVEKG-NLGGVCLNVGCIPSKALISASHRYEQAKHSEEMGIKAENVTIDF 79 (455)
T ss_dssp ECSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-CTTHHHHHTSHHHHHHHHHHHHHHHHHHTCGGGTEECCSCEECH
T ss_pred cCCEEEECCCHHHHHHHHHHHh--CCCeEEEEECC-CCCCcCcCcCchhhHHHHHHHHHHHHHHHHHhcCcccCCCccCH
Confidence 3799999999999999999999 89999999998 777765 33332211 001
Q ss_pred hH-----------HHHHHHHhhcCCCcEEEceEEEEE-----Eeeeccc--ccccCEEEEeeCCCCCCCCCCCCCCCCCe
Q psy4525 66 KN-----------VINTFTKTGDNPRVNFYGNICLGQ-----DISLGDL--TNAYHAVVLTYGADNDKKLNIPGEDGKNI 127 (388)
Q Consensus 66 ~~-----------~~~~~~~~~~~~~i~~~~~~~v~~-----~~~~~~~--~~~yd~lvlAtG~~~~~~~~i~g~~~~~v 127 (388)
.. +...+.+.+++.+++++.++.+.. .+...+. ...||+||+|||+.+ +.++++|.+.. +
T Consensus 80 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~i~~d~lViATGs~p-~~~~~~g~~~~-v 157 (455)
T 1ebd_A 80 AKVQEWKASVVKKLTGGVEGLLKGNKVEIVKGEAYFVDANTVRVVNGDSAQTYTFKNAIIATGSRP-IELPNFKFSNR-I 157 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTCEEEESEEEEEETTEEEEEETTEEEEEECSEEEECCCEEE-CCBTTBCCCSS-E
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCcEEEEeCEEEEecCCCC-CCCCCCCccce-E
Confidence 11 222345566778999987765432 1322222 348999999999987 46777776532 5
Q ss_pred eecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 128 ISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
++..++.. ....+++++|||+|.+|+|+|..|. +.+ .+|+++.|.+.
T Consensus 158 ~~~~~~~~------------~~~~~~~vvViGgG~~g~e~A~~l~--------------------~~g-~~Vtlv~~~~~ 204 (455)
T 1ebd_A 158 LDSTGALN------------LGEVPKSLVVIGGGYIGIELGTAYA--------------------NFG-TKVTILEGAGE 204 (455)
T ss_dssp ECHHHHHT------------CSSCCSEEEEECCSHHHHHHHHHHH--------------------HTT-CEEEEEESSSS
T ss_pred ecHHHHhc------------cccCCCeEEEECCCHHHHHHHHHHH--------------------HcC-CcEEEEEcCCc
Confidence 55544431 1123689999999999999999876 233 47999999876
Q ss_pred ccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeC
Q psy4525 208 LQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLN 287 (388)
Q Consensus 208 ~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~ 287 (388)
+...+. +++ .+.+.+.+. +.||++++++.++++..+
T Consensus 205 ~l~~~~-~~~-------------------------------~~~l~~~l~------------~~gv~i~~~~~v~~i~~~ 240 (455)
T 1ebd_A 205 ILSGFE-KQM-------------------------------AAIIKKRLK------------KKGVEVVTNALAKGAEER 240 (455)
T ss_dssp SSTTSC-HHH-------------------------------HHHHHHHHH------------HTTCEEEESEEEEEEEEE
T ss_pred cccccC-HHH-------------------------------HHHHHHHHH------------HCCCEEEeCCEEEEEEEe
Confidence 543221 111 112222222 578999999999999864
Q ss_pred CCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 288 DNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 288 ~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
+ +. ..+.+.+ .++++++++|.||+|+|++||+.. .++++++++.+.+|+..
T Consensus 241 ~-~~-~~v~~~~-----~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~ 296 (455)
T 1ebd_A 241 E-DG-VTVTYEA-----NGETKTIDADYVLVTVGRRPNTDELGLEQIGIKMTNRGLIEVDQQC 296 (455)
T ss_dssp T-TE-EEEEEEE-----TTEEEEEEESEEEECSCEEESCSSSSTTTTTCCBCTTSCBCCCTTC
T ss_pred C-Ce-EEEEEEe-----CCceeEEEcCEEEECcCCCcccCcCChhhcCCccCCCCCEeeCCCc
Confidence 3 22 2333321 345678999999999999999731 34566655557777653
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.6e-25 Score=204.54 Aligned_cols=255 Identities=17% Similarity=0.208 Sum_probs=156.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCC---Cc--chhHHHHHHHHhhcCCCcEEEce
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPD---HP--EVKNVINTFTKTGDNPRVNFYGN 86 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~---~~--~~~~~~~~~~~~~~~~~i~~~~~ 86 (388)
.+||+||||||||++||..|++ .|++|+|||+. .+||.+ ++++.+. +. ...++.........+.+..+..+
T Consensus 6 ~yDvvIIG~GpAGl~aA~~l~~--~g~~V~liE~~-~~gG~~~~~~~i~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (312)
T 4gcm_A 6 DFDIAIIGAGPAGMTAAVYASR--ANLKTVMIERG-IPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYG 82 (312)
T ss_dssp SEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-CTTGGGGGCSCBCCSTTCSSBCHHHHHHHHHHHHHHTTCEEEEC
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCCEEEEecC-CCCCeeecccccCCcCCccccchHHHHHHHHHHHhhccccccce
Confidence 5899999999999999999999 89999999986 677776 4454433 32 24455555555555555555543
Q ss_pred EEEEE-------EeeecccccccCEEEEeeCCCCCCCCCCCCCCCC---CeeecccccccccCCCCccccCcCCCCCeEE
Q psy4525 87 ICLGQ-------DISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGK---NIISARSFVGWYNGLPEDASLDLSLDCEEAT 156 (388)
Q Consensus 87 ~~v~~-------~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vv 156 (388)
..... .+..+..+..||+||||||+.+ +.|++||.+.. ++.+..... .....+|+|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~d~liiAtGs~~-~~~~ipG~~~~~~~~v~~~~~~~------------~~~~~~k~vv 149 (312)
T 4gcm_A 83 DIKSVEDKGEYKVINFGNKELTAKAVIIATGAEY-KKIGVPGEQELGGRGVSYCAVCD------------GAFFKNKRLF 149 (312)
T ss_dssp CCCEEEECSSCEEEECSSCEEEEEEEEECCCEEE-CCCCCTTTTTTBTTTEESCHHHH------------GGGGTTCEEE
T ss_pred eeeeeeeeecceeeccCCeEEEeceeEEcccCcc-CcCCCCChhhhCCccEEeeeccC------------ccccCCCEEE
Confidence 32211 1222333347999999999988 68899997631 222111110 2234579999
Q ss_pred EEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccc
Q psy4525 157 ILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLC 236 (388)
Q Consensus 157 VIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~ 236 (388)
|||||++|+|+|..|+ ....+||+++|++.+.......+
T Consensus 150 ViGgG~ig~E~A~~l~---------------------~~g~~Vtlv~~~~~~~~~~~~~~-------------------- 188 (312)
T 4gcm_A 150 VIGGGDSAVEEGTFLT---------------------KFADKVTIVHRRDELRAQRILQD-------------------- 188 (312)
T ss_dssp EECCSHHHHHHHHHHT---------------------TTCSEEEEECSSSSCCSCHHHHH--------------------
T ss_pred EECCCHHHHHHHHHHH---------------------hcCCEEEEEecccccCcchhHHH--------------------
Confidence 9999999999999886 34468999999876543211000
Q ss_pred cchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceE
Q psy4525 237 GVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIA 316 (388)
Q Consensus 237 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~V 316 (388)
..+ ...++..............+ .......... ...+++..+++|.|
T Consensus 189 -----------------~~~------------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~~~~~~~d~v 235 (312)
T 4gcm_A 189 -----------------RAF------------KNDKIDFIWSHTLKSINEKD-GKVGSVTLTS---TKDGSEETHEADGV 235 (312)
T ss_dssp -----------------HHH------------HCTTEEEECSEEEEEEEEET-TEEEEEEEEE---TTTCCEEEEECSEE
T ss_pred -----------------HHH------------HhcCcceeeecceeeeeccc-cccccceeee---ecCCceeEEeeeeE
Confidence 001 13445555554444444321 2222222111 23567789999999
Q ss_pred EEccccCCccCC---CCCcccCCCccccCCCCCCeecchhhHHhHH
Q psy4525 317 FRSIGYQSRCVD---SDIPFNEKSCTVIPKEGVPVVTWEGWKAIDK 359 (388)
Q Consensus 317 i~a~G~~p~~~~---~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~ 359 (388)
++++|++|+... .++ .+++++|++|+.....+ .+.|...|+
T Consensus 236 ~~~~g~~~~~~~~~~~g~-~~~~G~I~vd~~~~Ts~-pgIyA~GDv 279 (312)
T 4gcm_A 236 FIYIGMKPLTAPFKDLGI-TNDVGYIVTKDDMTTSV-PGIFAAGDV 279 (312)
T ss_dssp EECSCEEESCGGGGGGTC-BCTTSCBCCCTTSBCSS-TTEEECSTT
T ss_pred EeecCCCcCchhHHhcce-ecCCCeEeeCCCCccCC-CCEEEEeec
Confidence 999999998742 222 23344577776553222 244555553
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-25 Score=221.36 Aligned_cols=250 Identities=13% Similarity=0.165 Sum_probs=166.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCc--------------------------
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHP-------------------------- 63 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~-------------------------- 63 (388)
...++|+||||||||+++|..|++ .|.+|+|||+.+.+||.| ++++.|...
T Consensus 4 ~~~~dvvIIGaG~aGl~aA~~l~~--~g~~V~liE~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~~~g~~~~~~~ 81 (470)
T 1dxl_A 4 SDENDVVIIGGGPGGYVAAIKAAQ--LGFKTTCIEKRGALGGTCLNVGCIPSKALLHSSHMYHEAKHSFANHGVKVSNVE 81 (470)
T ss_dssp CCCCCEEEECCSHHHHHHHHHHHH--HTCCEEEEECSSSSCCSHHHHSHHHHHHHHHHHHHHHHHHHTHHHHTEEESCEE
T ss_pred CccCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCccccccCcCccchHHHHHHHHHHHHHHHHHHhcCcccCCCc
Confidence 346899999999999999999999 799999999998888876 334333210
Q ss_pred -chhH-----------HHHHHHHhhcCCCcEEEceEEEEE-----Eeeeccc---ccccCEEEEeeCCCCCCCCCCCCCC
Q psy4525 64 -EVKN-----------VINTFTKTGDNPRVNFYGNICLGQ-----DISLGDL---TNAYHAVVLTYGADNDKKLNIPGED 123 (388)
Q Consensus 64 -~~~~-----------~~~~~~~~~~~~~i~~~~~~~v~~-----~~~~~~~---~~~yd~lvlAtG~~~~~~~~i~g~~ 123 (388)
.... +...+.+.+++.+++++.++.+.. .+...++ ...||+||+|||+.+ +.++++|.+
T Consensus 82 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~~G~~~~i~~d~lIiAtGs~p-~~p~~~g~~ 160 (470)
T 1dxl_A 82 IDLAAMMGQKDKAVSNLTRGIEGLFKKNKVTYVKGYGKFVSPSEISVDTIEGENTVVKGKHIIIATGSDV-KSLPGVTID 160 (470)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEEEETTEEEECCSSSCCEEEECSEEEECCCEEE-CCBTTBCCC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEeCCCceEEEEcCEEEECCCCCC-CCCCCCCCC
Confidence 0111 111223445556888887765432 1222222 348999999999987 477788876
Q ss_pred CCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEe
Q psy4525 124 GKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVG 203 (388)
Q Consensus 124 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~ 203 (388)
.+++++..++... ...+++++|||+|++|+|+|..|. +.+ .+|++++
T Consensus 161 ~~~v~~~~~~~~~------------~~~~~~vvViGgG~~g~e~A~~l~--------------------~~g-~~Vtli~ 207 (470)
T 1dxl_A 161 EKKIVSSTGALAL------------SEIPKKLVVIGAGYIGLEMGSVWG--------------------RIG-SEVTVVE 207 (470)
T ss_dssp SSSEECHHHHTTC------------SSCCSEEEESCCSHHHHHHHHHHH--------------------HHT-CEEEEEC
T ss_pred cccEEeHHHhhhh------------hhcCCeEEEECCCHHHHHHHHHHH--------------------HcC-CcEEEEE
Confidence 5567766655421 123689999999999999999876 123 4799999
Q ss_pred ecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCccee
Q psy4525 204 RRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTE 283 (388)
Q Consensus 204 r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~ 283 (388)
|.+.+...+. +++. +.+.+.+. +.||++++++.+++
T Consensus 208 ~~~~~l~~~~-~~~~-------------------------------~~l~~~l~------------~~gv~i~~~~~v~~ 243 (470)
T 1dxl_A 208 FASEIVPTMD-AEIR-------------------------------KQFQRSLE------------KQGMKFKLKTKVVG 243 (470)
T ss_dssp SSSSSSTTSC-HHHH-------------------------------HHHHHHHH------------HSSCCEECSEEEEE
T ss_pred cCCccccccc-HHHH-------------------------------HHHHHHHH------------HcCCEEEeCCEEEE
Confidence 9976543222 1211 12222222 57999999999999
Q ss_pred eeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 284 FKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 284 i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
+..++++ ..+.+.+. ..++++++++|.||+|+|++||+.. .++++++++++.+|+..
T Consensus 244 i~~~~~~--~~v~~~~~---~~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~ 305 (470)
T 1dxl_A 244 VDTSGDG--VKLTVEPS---AGGEQTIIEADVVLVSAGRTPFTSGLNLDKIGVETDKLGRILVNERF 305 (470)
T ss_dssp EECSSSS--EEEEEEES---SSCCCEEEEESEEECCCCEEECCTTSCCTTTTCCBCSSSCBCCCTTC
T ss_pred EEEcCCe--EEEEEEec---CCCcceEEECCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECcCC
Confidence 9864322 23433210 0234478999999999999999732 34566655558877653
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.3e-26 Score=221.69 Aligned_cols=246 Identities=17% Similarity=0.173 Sum_probs=162.3
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCc--EEEEcCCCCCCCc---eeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEE
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQST--VDIYEKLPVPFGL---VRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNIC 88 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~--v~lie~~~~~gg~---~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 88 (388)
++|+|||||+||+++|..|++ .+.+ |++||+++.++.. +...+.........+ ....+++.+.+++++.++.
T Consensus 3 ~~vvIIGaG~AGl~aA~~L~~--~g~~~~V~li~~~~~~~y~~~~l~~~~~~g~~~~~~~-~~~~~~~~~~~i~~~~~~~ 79 (410)
T 3ef6_A 3 THVAIIGNGVGGFTTAQALRA--EGFEGRISLIGDEPHLPYDRPSLSKAVLDGSLERPPI-LAEADWYGEARIDMLTGPE 79 (410)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCCSEEEEEECSSSSSBCSGGGGTHHHHTSSSSCCB-SSCTTHHHHTTCEEEESCC
T ss_pred CCEEEEcccHHHHHHHHHHHc--cCcCCeEEEEECCCCCCcCCccccHHHhCCCCCHHHh-cCCHHHHHHCCCEEEeCCE
Confidence 589999999999999999999 6766 9999998765321 100000000001111 1122334456899988855
Q ss_pred EEE------Eeeeccc-ccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCC
Q psy4525 89 LGQ------DISLGDL-TNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQG 161 (388)
Q Consensus 89 v~~------~~~~~~~-~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG 161 (388)
+.. .+.+.+. ...||+||+|||+.+ +.+++||.+.+++++.+++..... .. .....+++++|||+|
T Consensus 80 v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p-~~~~ipG~~~~~v~~~~~~~d~~~----l~--~~~~~~~~vvViGgG 152 (410)
T 3ef6_A 80 VTALDVQTRTISLDDGTTLSADAIVIATGSRA-RTMALPGSQLPGVVTLRTYGDVQV----LR--DSWTSATRLLIVGGG 152 (410)
T ss_dssp EEEEETTTTEEEETTSCEEECSEEEECCCEEE-CCCCCTTTTSTTEECCCSHHHHHH----HH--HHCCTTCEEEEECCS
T ss_pred EEEEECCCCEEEECCCCEEECCEEEEccCCcc-cCCCCCCccccceEEeccHHHHHH----HH--HHhccCCeEEEECCC
Confidence 432 2444444 348999999999987 578899988888887655442111 00 112347999999999
Q ss_pred hHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhh
Q psy4525 162 NVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEA 241 (388)
Q Consensus 162 ~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~ 241 (388)
++|+|+|..|. +.+ .+|+++.+.+.+.....++++
T Consensus 153 ~~g~E~A~~l~--------------------~~g-~~Vtvv~~~~~~l~~~~~~~~------------------------ 187 (410)
T 3ef6_A 153 LIGCEVATTAR--------------------KLG-LSVTILEAGDELLVRVLGRRI------------------------ 187 (410)
T ss_dssp HHHHHHHHHHH--------------------HTT-CEEEEECSSSSSSHHHHCHHH------------------------
T ss_pred HHHHHHHHHHH--------------------hCC-CeEEEEecCCccchhhcCHHH------------------------
Confidence 99999999776 233 579999998765422111111
Q ss_pred hccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccc
Q psy4525 242 SATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIG 321 (388)
Q Consensus 242 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G 321 (388)
.+.+.+.+. +.||+++++..++++..+ +.+..+++ .++++++||.||+|+|
T Consensus 188 -------~~~l~~~l~------------~~GV~i~~~~~v~~i~~~--~~~~~v~~--------~dg~~i~aD~Vv~a~G 238 (410)
T 3ef6_A 188 -------GAWLRGLLT------------ELGVQVELGTGVVGFSGE--GQLEQVMA--------SDGRSFVADSALICVG 238 (410)
T ss_dssp -------HHHHHHHHH------------HHTCEEECSCCEEEEECS--SSCCEEEE--------TTSCEEECSEEEECSC
T ss_pred -------HHHHHHHHH------------HCCCEEEeCCEEEEEecc--CcEEEEEE--------CCCCEEEcCEEEEeeC
Confidence 112222222 679999999999999853 45556654 3456899999999999
Q ss_pred cCCccC---CCCCcccCCCccccCCCC
Q psy4525 322 YQSRCV---DSDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 322 ~~p~~~---~~~l~~~~~~gi~l~~~~ 345 (388)
++|+.. ..++.++ +|+.+|+..
T Consensus 239 ~~p~~~l~~~~gl~~~--~gi~vd~~~ 263 (410)
T 3ef6_A 239 AEPADQLARQAGLACD--RGVIVDHCG 263 (410)
T ss_dssp EEECCHHHHHTTCCBS--SSEECCTTS
T ss_pred CeecHHHHHhCCCccC--CeEEEccCe
Confidence 999973 2456665 578887654
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.8e-25 Score=205.98 Aligned_cols=247 Identities=15% Similarity=0.191 Sum_probs=165.6
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCC-------CCCCc--chhHHHHHHHHhhcCCCcEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGV-------APDHP--EVKNVINTFTKTGDNPRVNF 83 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~-------~p~~~--~~~~~~~~~~~~~~~~~i~~ 83 (388)
.++|+||||||||+++|..|++ .+.+|+|||+.+.+||.|.... .|.++ ...++..++.+.+.++++++
T Consensus 5 ~~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 82 (335)
T 2zbw_A 5 HTDVLIVGAGPTGLFAGFYVGM--RGLSFRFVDPLPEPGGQLTALYPEKYIYDVAGFPKVYAKDLVKGLVEQVAPFNPVY 82 (335)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHGGGCCEE
T ss_pred cCcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCCCCCCeeeccCCCceeeccCCCCCCCHHHHHHHHHHHHHHcCCEE
Confidence 4799999999999999999999 8999999999988988773211 02222 35677777888888888888
Q ss_pred EceEEEEE--------Eeeeccc-ccccCEEEEeeCCCC--CCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCC
Q psy4525 84 YGNICLGQ--------DISLGDL-TNAYHAVVLTYGADN--DKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDC 152 (388)
Q Consensus 84 ~~~~~v~~--------~~~~~~~-~~~yd~lvlAtG~~~--~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (388)
+.++.+.. .+...+. ...||+||+|||+.+ ++.++++|.+. +....+...+. + .....+
T Consensus 83 ~~~~~v~~i~~~~~~~~v~~~~g~~~~~~~lv~AtG~~~~~p~~~~i~g~~~---~~~~~~~~~~~---~----~~~~~~ 152 (335)
T 2zbw_A 83 SLGERAETLEREGDLFKVTTSQGNAYTAKAVIIAAGVGAFEPRRIGAPGERE---FEGRGVYYAVK---S----KAEFQG 152 (335)
T ss_dssp EESCCEEEEEEETTEEEEEETTSCEEEEEEEEECCTTSEEEECCCCCTTTTT---TBTTTEESSCS---C----GGGGTT
T ss_pred EeCCEEEEEEECCCEEEEEECCCCEEEeCEEEECCCCCCCCCCCCCCCChhh---ccCcEEEEecC---c----hhhcCC
Confidence 77655432 1333333 347999999999842 24667777642 11111110000 1 112357
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecc
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRN 232 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~ 232 (388)
++|+|||+|.+|+|+|..|. ....+|+++.|++.+... ++
T Consensus 153 ~~v~viG~G~~g~e~a~~l~---------------------~~g~~V~~v~~~~~~~~~---~~---------------- 192 (335)
T 2zbw_A 153 KRVLIVGGGDSAVDWALNLL---------------------DTARRITLIHRRPQFRAH---EA---------------- 192 (335)
T ss_dssp CEEEEECSSHHHHHHHHHTT---------------------TTSSEEEEECSSSSCCSC---HH----------------
T ss_pred CEEEEECCCHHHHHHHHHHH---------------------hhCCEEEEEEcCCccCcc---HH----------------
Confidence 99999999999999999886 224579999998764221 01
Q ss_pred cccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEe
Q psy4525 233 EQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIP 312 (388)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~ 312 (388)
..+++.+.+. +.||+++++..++++.. ++.+..+.+... ..++.++++
T Consensus 193 ---------------~~~~l~~~l~------------~~gv~v~~~~~v~~i~~--~~~~~~v~~~~~---~~g~~~~i~ 240 (335)
T 2zbw_A 193 ---------------SVKELMKAHE------------EGRLEVLTPYELRRVEG--DERVRWAVVFHN---QTQEELALE 240 (335)
T ss_dssp ---------------HHHHHHHHHH------------TTSSEEETTEEEEEEEE--SSSEEEEEEEET---TTCCEEEEE
T ss_pred ---------------HHHHHHhccc------------cCCeEEecCCcceeEcc--CCCeeEEEEEEC---CCCceEEEe
Confidence 1122222222 56999999999999986 356666666421 023447899
Q ss_pred cceEEEccccCCccC-C--CCCcccCCCccccCCC
Q psy4525 313 SGIAFRSIGYQSRCV-D--SDIPFNEKSCTVIPKE 344 (388)
Q Consensus 313 ~D~Vi~a~G~~p~~~-~--~~l~~~~~~gi~l~~~ 344 (388)
+|.||+|+|++|+.. . .+++++ ++++.+|+.
T Consensus 241 ~D~vi~a~G~~p~~~~l~~~~~~~~-~g~i~vd~~ 274 (335)
T 2zbw_A 241 VDAVLILAGYITKLGPLANWGLALE-KNKIKVDTT 274 (335)
T ss_dssp CSEEEECCCEEEECGGGGGSCCCEE-TTEEECCTT
T ss_pred cCEEEEeecCCCCchHhhhcceecc-CCeeeeCCC
Confidence 999999999999862 2 355565 567777764
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-25 Score=220.82 Aligned_cols=243 Identities=14% Similarity=0.150 Sum_probs=162.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee-eCCCCCC----------------------------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR-YGVAPDH---------------------------- 62 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~-~g~~p~~---------------------------- 62 (388)
..+||+||||||||+++|..|++ .|.+|+|||+. .+||.|. .||.|..
T Consensus 10 ~~~dVvVIGgG~aGl~aA~~l~~--~g~~V~liE~~-~~GG~~~n~gciP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~ 86 (479)
T 2hqm_A 10 KHYDYLVIGGGSGGVASARRAAS--YGAKTLLVEAK-ALGGTCVNVGCVPKKVMWYASDLATRVSHANEYGLYQNLPLDK 86 (479)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHH--TSCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTBSTTSCCSG
T ss_pred ccCCEEEEcCCHHHHHHHHHHHH--CCCcEEEEeCC-CcCCcCcccCcHHHHHHHHHHHHHHHHHhHHhcCccccccccc
Confidence 35799999999999999999999 89999999998 6787763 2322210
Q ss_pred ----cchhH-----------HHHHHHHhhcCCCcEEEceEEEEE-----Eeeeccc---ccccCEEEEeeCCCCCCCC-C
Q psy4525 63 ----PEVKN-----------VINTFTKTGDNPRVNFYGNICLGQ-----DISLGDL---TNAYHAVVLTYGADNDKKL-N 118 (388)
Q Consensus 63 ----~~~~~-----------~~~~~~~~~~~~~i~~~~~~~v~~-----~~~~~~~---~~~yd~lvlAtG~~~~~~~-~ 118 (388)
..... +...+...+++.+++++.+..... .+...+. ...||+||+|||+.+ +.| +
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~v~~~~g~~~~~~~d~lviAtGs~p-~~p~~ 165 (479)
T 2hqm_A 87 EHLTFNWPEFKQKRDAYVHRLNGIYQKNLEKEKVDVVFGWARFNKDGNVEVQKRDNTTEVYSANHILVATGGKA-IFPEN 165 (479)
T ss_dssp GGCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEECTTSCEEEEESSSCCEEEEEEEEEECCCEEE-CCCTT
T ss_pred ccCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeCCCcEEEEEeCEEEEcCCCCC-CCCCC
Confidence 01111 112233445567888887754321 1222233 347999999999987 466 7
Q ss_pred CCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcE
Q psy4525 119 IPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKS 198 (388)
Q Consensus 119 i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (388)
+||.+ .++++.++... ...+++++|||+|++|+|+|..|. +.+ .+
T Consensus 166 i~g~~--~~~~~~~~~~l------------~~~~~~vvViGgG~ig~E~A~~l~--------------------~~g-~~ 210 (479)
T 2hqm_A 166 IPGFE--LGTDSDGFFRL------------EEQPKKVVVVGAGYIGIELAGVFH--------------------GLG-SE 210 (479)
T ss_dssp STTGG--GSBCHHHHHHC------------SSCCSEEEEECSSHHHHHHHHHHH--------------------HTT-CE
T ss_pred CCCcc--cccchHHHhcc------------cccCCeEEEECCCHHHHHHHHHHH--------------------HcC-Cc
Confidence 88763 34444444321 123689999999999999999876 233 57
Q ss_pred EEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEec
Q psy4525 199 VNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFL 278 (388)
Q Consensus 199 V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~ 278 (388)
|+++.|.+.+...+. +++. +.+.+.+. +.||+++++
T Consensus 211 Vtlv~~~~~~l~~~d-~~~~-------------------------------~~l~~~l~------------~~Gv~i~~~ 246 (479)
T 2hqm_A 211 THLVIRGETVLRKFD-ECIQ-------------------------------NTITDHYV------------KEGINVHKL 246 (479)
T ss_dssp EEEECSSSSSCTTSC-HHHH-------------------------------HHHHHHHH------------HHTCEEECS
T ss_pred eEEEEeCCccccccC-HHHH-------------------------------HHHHHHHH------------hCCeEEEeC
Confidence 999999977643322 2211 12222222 579999999
Q ss_pred CcceeeeeCCCCceeEEEEccCccccCCce-eEEecceEEEccccCCccCC----CCCcccCCCccccCCCC
Q psy4525 279 RSPTEFKLNDNGAITGINFANQQALVTEDT-ELIPSGIAFRSIGYQSRCVD----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 279 ~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~-~~l~~D~Vi~a~G~~p~~~~----~~l~~~~~~gi~l~~~~ 345 (388)
+.++++..++++.+..+.+ .++ ++++||.||+|+|++||+.. .++++++++++.+|+..
T Consensus 247 ~~v~~i~~~~~~~~~~v~~--------~~G~~~i~~D~vv~a~G~~p~~~l~l~~~gl~~~~~G~i~vd~~~ 310 (479)
T 2hqm_A 247 SKIVKVEKNVETDKLKIHM--------NDSKSIDDVDELIWTIGRKSHLGMGSENVGIKLNSHDQIIADEYQ 310 (479)
T ss_dssp CCEEEEEECC-CCCEEEEE--------TTSCEEEEESEEEECSCEEECCCSSGGGGTCCBCTTSCBCCCTTC
T ss_pred CEEEEEEEcCCCcEEEEEE--------CCCcEEEEcCEEEECCCCCCccccChhhcCceECCCCCEeECCCC
Confidence 9999998654443445544 234 68999999999999999721 35677766678887654
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-25 Score=220.08 Aligned_cols=241 Identities=15% Similarity=0.177 Sum_probs=161.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCc---------------------------c
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHP---------------------------E 64 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~---------------------------~ 64 (388)
.+||+||||||||+++|..|++ .|.+|+|||++ .+||.| +.||.|... .
T Consensus 4 ~~dvvIIGgG~aGl~aA~~l~~--~g~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~ 80 (450)
T 1ges_A 4 HYDYIAIGGGSGGIASINRAAM--YGQKCALIEAK-ELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFN 80 (450)
T ss_dssp EEEEEEECCSHHHHHHHHHHHT--TTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEEC
T ss_pred cCCEEEECCCHHHHHHHHHHHh--CCCeEEEEcCC-CCCCcccccCccChHHHHHHHHHHHHHHHHHHhcCccCCCCccC
Confidence 4799999999999999999999 89999999998 678876 334333210 0
Q ss_pred hh-----------HHHHHHHHhhcCCCcEEEceEEEEE---EeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeec
Q psy4525 65 VK-----------NVINTFTKTGDNPRVNFYGNICLGQ---DISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISA 130 (388)
Q Consensus 65 ~~-----------~~~~~~~~~~~~~~i~~~~~~~v~~---~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~ 130 (388)
.. .+...+...+.+.+++++.+..... .+.++.....||+||+|||+.+ +.|++||.+ .+++.
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~~~g~~~~~d~lviAtGs~p-~~p~i~g~~--~~~~~ 157 (450)
T 1ges_A 81 WETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVNGETITADHILIATGGRP-SHPDIPGVE--YGIDS 157 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEETTEEEEEEEEEECCCEEE-CCCCSTTGG--GSBCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEECCEEEEeCEEEECCCCCC-CCCCCCCcc--ceecH
Confidence 11 1112223344567888886654321 2333333358999999999987 477788763 34444
Q ss_pred ccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccc
Q psy4525 131 RSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQV 210 (388)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~ 210 (388)
.++... ...+++++|||+|++|+|+|..|+ +.+ .+|+++.|.+.+..
T Consensus 158 ~~~~~~------------~~~~~~vvViGgG~~g~e~A~~l~--------------------~~g-~~Vtlv~~~~~~l~ 204 (450)
T 1ges_A 158 DGFFAL------------PALPERVAVVGAGYIGVELGGVIN--------------------GLG-AKTHLFEMFDAPLP 204 (450)
T ss_dssp HHHHHC------------SSCCSEEEEECCSHHHHHHHHHHH--------------------HTT-CEEEEECSSSSSST
T ss_pred HHhhhh------------hhcCCeEEEECCCHHHHHHHHHHH--------------------hcC-CEEEEEEeCCchhh
Confidence 444321 123689999999999999999876 233 57999999876543
Q ss_pred cCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCC
Q psy4525 211 AFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNG 290 (388)
Q Consensus 211 ~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~ 290 (388)
.+.+ ++ .+.+.+.+. +.||++++++.++++..++++
T Consensus 205 ~~~~-~~-------------------------------~~~l~~~l~------------~~Gv~i~~~~~v~~i~~~~~~ 240 (450)
T 1ges_A 205 SFDP-MI-------------------------------SETLVEVMN------------AEGPQLHTNAIPKAVVKNTDG 240 (450)
T ss_dssp TSCH-HH-------------------------------HHHHHHHHH------------HHSCEEECSCCEEEEEECTTS
T ss_pred hhhH-HH-------------------------------HHHHHHHHH------------HCCCEEEeCCEEEEEEEeCCc
Confidence 3221 11 112222222 579999999999999865433
Q ss_pred ceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 291 AITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 291 ~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
. ..+.+ .++++++||.||+|+|++||+.. .++++++++.+.+|+..
T Consensus 241 ~-~~v~~--------~~g~~i~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~g~i~vd~~~ 291 (450)
T 1ges_A 241 S-LTLEL--------EDGRSETVDCLIWAIGREPANDNINLEAAGVKTNEKGYIVVDKYQ 291 (450)
T ss_dssp C-EEEEE--------TTSCEEEESEEEECSCEEESCTTSCHHHHTCCBCTTSCBCCCTTS
T ss_pred E-EEEEE--------CCCcEEEcCEEEECCCCCcCCCCCCchhcCceECCCCCEeECCCC
Confidence 2 23443 34458999999999999999831 35667665558887654
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=217.81 Aligned_cols=248 Identities=14% Similarity=0.176 Sum_probs=163.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCC--cEEEEcCCCCCCCc---eeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQS--TVDIYEKLPVPFGL---VRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNI 87 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~--~v~lie~~~~~gg~---~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~ 87 (388)
+++|+|||||+||+++|..|++ .|. +|+|||+++.+... +............++.....+++.+.+++++. .
T Consensus 1 ~k~vvIIGaG~aGl~aA~~L~~--~g~~~~V~lie~~~~~~y~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~-~ 77 (404)
T 3fg2_P 1 NDTVLIAGAGHAGFQVAVSLRQ--AKYPGRIALINDEKHLPYQRPPLSKAYLKSGGDPNSLMFRPEKFFQDQAIELIS-D 77 (404)
T ss_dssp CCCEEEECCSHHHHHHHHHHHH--TTCCSCEEEECCSSSSSBCSGGGGTGGGGSCCCTTSSBSSCHHHHHHTTEEEEC-C
T ss_pred CCCEEEEcChHHHHHHHHHHHh--hCcCCCEEEEeCCCCCCCCCccCCHHHHCCCCCHHHccCCCHHHHHhCCCEEEE-E
Confidence 3689999999999999999999 676 89999998754321 11011011111111222223344456888887 4
Q ss_pred EE-EE-----Eeeeccc-ccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcC
Q psy4525 88 CL-GQ-----DISLGDL-TNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQ 160 (388)
Q Consensus 88 ~v-~~-----~~~~~~~-~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGg 160 (388)
.+ .. .+.+.+. ...||+||+|||+.+ +.+++||.+.+++++.+.+...... . .....+++++|||+
T Consensus 78 ~v~~id~~~~~v~~~~g~~~~~d~lvlAtG~~p-~~~~i~g~~~~~v~~~~~~~d~~~l----~--~~~~~~~~vvViGg 150 (404)
T 3fg2_P 78 RMVSIDREGRKLLLASGTAIEYGHLVLATGARN-RMLDVPNASLPDVLYLRTLDESEVL----R--QRMPDKKHVVVIGA 150 (404)
T ss_dssp CEEEEETTTTEEEESSSCEEECSEEEECCCEEE-CCCCSTTTTSTTEECCSSHHHHHHH----H--HHGGGCSEEEEECC
T ss_pred EEEEEECCCCEEEECCCCEEECCEEEEeeCCCc-cCCCCCCCCCCcEEEECCHHHHHHH----H--HHhhcCCeEEEECC
Confidence 33 22 2444444 348999999999977 5788999888888865544321100 0 11224789999999
Q ss_pred ChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchh
Q psy4525 161 GNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHE 240 (388)
Q Consensus 161 G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~ 240 (388)
|++|+|+|..|. +.+ .+|+++.+.+.+.....++++.
T Consensus 151 G~~g~e~A~~l~--------------------~~g-~~Vtvv~~~~~~~~~~~~~~~~---------------------- 187 (404)
T 3fg2_P 151 GFIGLEFAATAR--------------------AKG-LEVDVVELAPRVMARVVTPEIS---------------------- 187 (404)
T ss_dssp SHHHHHHHHHHH--------------------HTT-CEEEEECSSSSTTTTTSCHHHH----------------------
T ss_pred CHHHHHHHHHHH--------------------hCC-CEEEEEeCCCcchhhccCHHHH----------------------
Confidence 999999999775 233 5799999988765432222222
Q ss_pred hhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEcc
Q psy4525 241 ASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSI 320 (388)
Q Consensus 241 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~ 320 (388)
+.+.+.+. +.||++++++.++++..+ ++.+..+++ .++++++||.||+|+
T Consensus 188 ---------~~l~~~l~------------~~GV~i~~~~~v~~i~~~-~~~v~~V~~--------~dG~~i~aD~Vv~a~ 237 (404)
T 3fg2_P 188 ---------SYFHDRHS------------GAGIRMHYGVRATEIAAE-GDRVTGVVL--------SDGNTLPCDLVVVGV 237 (404)
T ss_dssp ---------HHHHHHHH------------HTTCEEECSCCEEEEEEE-TTEEEEEEE--------TTSCEEECSEEEECC
T ss_pred ---------HHHHHHHH------------hCCcEEEECCEEEEEEec-CCcEEEEEe--------CCCCEEEcCEEEECc
Confidence 12222222 579999999999999864 367777765 345689999999999
Q ss_pred ccCCccC---CCCCcccCCCccccCCCC
Q psy4525 321 GYQSRCV---DSDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 321 G~~p~~~---~~~l~~~~~~gi~l~~~~ 345 (388)
|++|+.. ..++..+ +|+.+|+..
T Consensus 238 G~~p~~~l~~~~gl~~~--~Gi~vd~~~ 263 (404)
T 3fg2_P 238 GVIPNVEIAAAAGLPTA--AGIIVDQQL 263 (404)
T ss_dssp CEEECCHHHHHTTCCBS--SSEEECTTS
T ss_pred CCccCHHHHHhCCCCCC--CCEEECCCc
Confidence 9999973 2456665 568877643
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-24 Score=201.70 Aligned_cols=242 Identities=18% Similarity=0.178 Sum_probs=163.5
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCCCCCCCceeeC----CCCC---CcchhHHHHHHHHhhcCCCcEEEc
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKLPVPFGLVRYG----VAPD---HPEVKNVINTFTKTGDNPRVNFYG 85 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~~~~gg~~~~g----~~p~---~~~~~~~~~~~~~~~~~~~i~~~~ 85 (388)
++|+||||||||+++|..|++ .|. +|+|||+. .+||.+.+. ..|. .....++..++.+.+.+.+++++.
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~--~g~~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~~~~ 78 (311)
T 2q0l_A 2 IDCAIIGGGPAGLSAGLYATR--GGVKNAVLFEKG-MPGGQITGSSEIENYPGVKEVVSGLDFMQPWQEQCFRFGLKHEM 78 (311)
T ss_dssp EEEEEECCSHHHHHHHHHHHH--TTCSSEEEECSS-STTCGGGGCSCBCCSTTCCSCBCHHHHHHHHHHHHHTTSCEEEC
T ss_pred ceEEEECccHHHHHHHHHHHH--CCCCcEEEEcCC-CCCcccccccccccCCCCcccCCHHHHHHHHHHHHHHcCCEEEE
Confidence 689999999999999999999 899 99999995 677776321 0122 234567788888888888998887
Q ss_pred eEEEEE-------Eeeeccc-ccccCEEEEeeCCCCCCCCCCCCCCC---CCeeecccccccccCCCCccccCcCCCCCe
Q psy4525 86 NICLGQ-------DISLGDL-TNAYHAVVLTYGADNDKKLNIPGEDG---KNIISARSFVGWYNGLPEDASLDLSLDCEE 154 (388)
Q Consensus 86 ~~~v~~-------~~~~~~~-~~~yd~lvlAtG~~~~~~~~i~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (388)
...... .+...+. ...||+||+|||+.+ +.+++||.+. +++++..... .....+++
T Consensus 79 ~~v~~i~~~~~~~~v~~~~g~~~~~~~vv~AtG~~~-~~~~~~g~~~~~~~~~~~~~~~~------------~~~~~~~~ 145 (311)
T 2q0l_A 79 TAVQRVSKKDSHFVILAEDGKTFEAKSVIIATGGSP-KRTGIKGESEYWGKGVSTCATCD------------GFFYKNKE 145 (311)
T ss_dssp SCEEEEEEETTEEEEEETTSCEEEEEEEEECCCEEE-CCCCCBTHHHHBTTTEESCHHHH------------GGGGTTSE
T ss_pred EEEEEEEEcCCEEEEEEcCCCEEECCEEEECCCCCC-CCCCCCChhhccCCcEEEeecCC------------hhhcCCCE
Confidence 433322 1223222 247999999999877 4777887531 2333221111 11234799
Q ss_pred EEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccc
Q psy4525 155 ATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQ 234 (388)
Q Consensus 155 vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~ 234 (388)
|+|||+|.+|+|+|..|. ....+|+++.|++.+.. .+ +
T Consensus 146 v~VvG~G~~g~e~A~~l~---------------------~~g~~Vtlv~~~~~~~~--~~-~------------------ 183 (311)
T 2q0l_A 146 VAVLGGGDTAVEEAIYLA---------------------NICKKVYLIHRRDGFRC--AP-I------------------ 183 (311)
T ss_dssp EEEECCSHHHHHHHHHHH---------------------TTSSEEEEECSSSSCCS--CH-H------------------
T ss_pred EEEECCCHHHHHHHHHHH---------------------hcCCEEEEEeeCCccCC--CH-H------------------
Confidence 999999999999999886 22357999999876421 11 1
Q ss_pred cccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecc
Q psy4525 235 LCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSG 314 (388)
Q Consensus 235 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D 314 (388)
+.+.+. ...||+++++..++++..+ ++.+..+.+.+. ..++..+++||
T Consensus 184 -----------------~~~~l~-----------~~~gv~v~~~~~v~~i~~~-~~~v~~v~~~~~---~~g~~~~i~~D 231 (311)
T 2q0l_A 184 -----------------TLEHAK-----------NNDKIEFLTPYVVEEIKGD-ASGVSSLSIKNT---ATNEKRELVVP 231 (311)
T ss_dssp -----------------HHHHHH-----------TCTTEEEETTEEEEEEEEE-TTEEEEEEEEET---TTCCEEEEECS
T ss_pred -----------------HHHHHh-----------hCCCeEEEeCCEEEEEECC-CCcEeEEEEEec---CCCceEEEecC
Confidence 111111 1368999999999999864 245656665421 12334589999
Q ss_pred eEEEccccCCccCC---C----CCcccCCCccccCCCC
Q psy4525 315 IAFRSIGYQSRCVD---S----DIPFNEKSCTVIPKEG 345 (388)
Q Consensus 315 ~Vi~a~G~~p~~~~---~----~l~~~~~~gi~l~~~~ 345 (388)
.||+|+|++|++.. . ++.+++++++.+|+..
T Consensus 232 ~vi~a~G~~p~~~~l~~~g~~~~l~~~~~g~i~vd~~~ 269 (311)
T 2q0l_A 232 GFFIFVGYDVNNAVLKQEDNSMLCKCDEYGSIVVDFSM 269 (311)
T ss_dssp EEEECSCEEECCGGGBCTTSCBSSCBCTTSCBCCCTTC
T ss_pred EEEEEecCccChhhhhcccccceeEeccCCCEEeCCcc
Confidence 99999999998631 2 2566666677777653
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-25 Score=219.67 Aligned_cols=246 Identities=15% Similarity=0.212 Sum_probs=162.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEc--------CCCCCCCce-eeCCCCCC---------------------
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYE--------KLPVPFGLV-RYGVAPDH--------------------- 62 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie--------~~~~~gg~~-~~g~~p~~--------------------- 62 (388)
.+||+||||||||+++|..|++. .|.+|+||| +...+||.| +.||.|..
T Consensus 7 ~~dvvVIGgG~aGl~aA~~la~~-~G~~V~liE~~~~~~~~~~~~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~ 85 (495)
T 2wpf_A 7 AFDLVVIGAGSGGLEAGWNAATL-YGKRVAVVDVQTSHGPPFYAALGGTCVNVGCVPKKLMVTGAQYMDHLRESAGFGWE 85 (495)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHH-HCCCEEEEESCSSSBTTTBCBTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTTEE
T ss_pred ccCEEEECCChhHHHHHHHHHHh-cCCeEEEEecccccccccCCCCCCeeecCCcchHHHHHHHHHHHHHHhHHHhcCcc
Confidence 47999999999999999999983 389999999 355788877 33443311
Q ss_pred -------cchhHHHH-----------HHHHhhcCC-CcEEEceEEEEE---Eeeec---------ccccccCEEEEeeCC
Q psy4525 63 -------PEVKNVIN-----------TFTKTGDNP-RVNFYGNICLGQ---DISLG---------DLTNAYHAVVLTYGA 111 (388)
Q Consensus 63 -------~~~~~~~~-----------~~~~~~~~~-~i~~~~~~~v~~---~~~~~---------~~~~~yd~lvlAtG~ 111 (388)
....++.. .+...+++. +++++.+..... .+++. .....||+||||||+
T Consensus 86 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~~~~~~~~~~d~lViATGs 165 (495)
T 2wpf_A 86 FDGSSVKANWKKLIAAKNEAVLDINKSYEGMFNDTEGLDFFLGWGSLESKNVVVVRETADPKSAVKERLQADHILLATGS 165 (495)
T ss_dssp CCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECCCE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeEEEEeeCCEEEEeecCCccCCCCeEEEcCEEEEeCCC
Confidence 11112221 223344566 899887754321 23333 223489999999999
Q ss_pred CCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhh
Q psy4525 112 DNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKL 191 (388)
Q Consensus 112 ~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~ 191 (388)
.+ +.|++||.+ .+++..++... ...+++++|||+|.+|+|+|..|. .+
T Consensus 166 ~p-~~p~i~G~~--~~~~~~~~~~~------------~~~~~~vvViGgG~ig~E~A~~l~-----------------~~ 213 (495)
T 2wpf_A 166 WP-QMPAIPGIE--HCISSNEAFYL------------PEPPRRVLTVGGGFISVEFAGIFN-----------------AY 213 (495)
T ss_dssp EE-CCCCCTTGG--GCEEHHHHTTC------------SSCCSEEEEECSSHHHHHHHHHHH-----------------HH
T ss_pred Cc-CCCCCCCcc--ccccHHHHHhh------------hhcCCeEEEECCCHHHHHHHHHHH-----------------hh
Confidence 87 477788763 45655554421 123689999999999999999876 10
Q ss_pred hcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCce
Q psy4525 192 STSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSK 271 (388)
Q Consensus 192 ~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (388)
. ....+|++++|.+.+...+.+ ++. +.+.+.+. +.
T Consensus 214 ~-~~g~~Vtlv~~~~~~l~~~d~-~~~-------------------------------~~l~~~l~------------~~ 248 (495)
T 2wpf_A 214 K-PPGGKVTLCYRNNLILRGFDE-TIR-------------------------------EEVTKQLT------------AN 248 (495)
T ss_dssp C-CTTCEEEEEESSSSSCTTSCH-HHH-------------------------------HHHHHHHH------------HT
T ss_pred C-CCCCeEEEEEcCCccccccCH-HHH-------------------------------HHHHHHHH------------hC
Confidence 0 113579999998876433221 111 12222322 57
Q ss_pred eEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccC---C--CCCcccCCCccccCCCC
Q psy4525 272 YFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCV---D--SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 272 gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~---~--~~l~~~~~~gi~l~~~~ 345 (388)
||++++++.++++..++++ ...+.+ .++++++||.||+|+|++||+. . .++.+++++++.+|+..
T Consensus 249 GV~i~~~~~v~~i~~~~~~-~~~v~~--------~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~i~Vd~~~ 318 (495)
T 2wpf_A 249 GIEIMTNENPAKVSLNTDG-SKHVTF--------ESGKTLDVDVVMMAIGRIPRTNDLQLGNVGVKLTPKGGVQVDEFS 318 (495)
T ss_dssp TCEEEESCCEEEEEECTTS-CEEEEE--------TTSCEEEESEEEECSCEEECCGGGTGGGTTCCBCTTSSBCCCTTC
T ss_pred CCEEEeCCEEEEEEEcCCc-eEEEEE--------CCCcEEEcCEEEECCCCcccccccchhhcCccCCCCCCEEECCCC
Confidence 9999999999999865333 234443 3445899999999999999973 1 45667766668887654
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=5.7e-25 Score=219.06 Aligned_cols=253 Identities=13% Similarity=0.182 Sum_probs=165.3
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee-eCCCCCC-------------------------cch-
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR-YGVAPDH-------------------------PEV- 65 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~-~g~~p~~-------------------------~~~- 65 (388)
.+||+||||||||+++|..|++ .|.+|+|||++ .+||.|. .||.|.. ...
T Consensus 2 ~~dVvIIGgG~aGl~aA~~l~~--~g~~V~liE~~-~~GG~c~~~gc~P~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 78 (500)
T 1onf_A 2 VYDLIVIGGGSGGMAAARRAAR--HNAKVALVEKS-RLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLP 78 (500)
T ss_dssp CBSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-STTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHH
T ss_pred ccCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCC-CcCccccccCCcchHHHHHHHHHHHHHHhhHhcCCccCCccCHH
Confidence 3799999999999999999999 89999999998 4788763 2332211 011
Q ss_pred ----------hHHHHHHHHhhcCCCcEEEceEEEE---EEeeecc--------------cccccCEEEEeeCCCCCCCCC
Q psy4525 66 ----------KNVINTFTKTGDNPRVNFYGNICLG---QDISLGD--------------LTNAYHAVVLTYGADNDKKLN 118 (388)
Q Consensus 66 ----------~~~~~~~~~~~~~~~i~~~~~~~v~---~~~~~~~--------------~~~~yd~lvlAtG~~~~~~~~ 118 (388)
..+...+...+++.+++++.++.+. ..+.+.. ....||+||+|||+.+ ..|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~id~~~v~v~~~~~~~~~~~~~~~~~~~~~d~lViAtGs~p-~~p~ 157 (500)
T 1onf_A 79 LLVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKP-VFPP 157 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCB-CCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEEeccccccccccCCCceEEEeCEEEECCCCCC-CCCC
Confidence 1222233445566789888665321 1222221 2348999999999987 4777
Q ss_pred CCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcE
Q psy4525 119 IPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKS 198 (388)
Q Consensus 119 i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (388)
+||.+ .+++..++.. ... +++++|||+|++|+|+|..|+ +.+ .+
T Consensus 158 i~G~~--~~~~~~~~~~------------~~~-~~~vvViGgG~ig~E~A~~l~--------------------~~g-~~ 201 (500)
T 1onf_A 158 VKGIE--NTISSDEFFN------------IKE-SKKIGIVGSGYIAVELINVIK--------------------RLG-ID 201 (500)
T ss_dssp CTTGG--GCEEHHHHTT------------CCC-CSEEEEECCSHHHHHHHHHHH--------------------TTT-CE
T ss_pred CCCCC--cccCHHHHhc------------cCC-CCeEEEECChHHHHHHHHHHH--------------------HcC-Ce
Confidence 88863 4555555431 111 789999999999999999886 233 57
Q ss_pred EEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEec
Q psy4525 199 VNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFL 278 (388)
Q Consensus 199 V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~ 278 (388)
|+++.|.+.+...+. +++. +.+.+.+. +.||+++++
T Consensus 202 Vtlv~~~~~~l~~~d-~~~~-------------------------------~~l~~~l~------------~~gv~i~~~ 237 (500)
T 1onf_A 202 SYIFARGNRILRKFD-ESVI-------------------------------NVLENDMK------------KNNINIVTF 237 (500)
T ss_dssp EEEECSSSSSCTTSC-HHHH-------------------------------HHHHHHHH------------HTTCEEECS
T ss_pred EEEEecCCccCcccc-hhhH-------------------------------HHHHHHHH------------hCCCEEEEC
Confidence 999999887653322 2221 12222222 579999999
Q ss_pred CcceeeeeCCCCceeEEEEccCccccCCceeE-EecceEEEccccCCccC---C--CCCcccCCCccccCCCCCCeecch
Q psy4525 279 RSPTEFKLNDNGAITGINFANQQALVTEDTEL-IPSGIAFRSIGYQSRCV---D--SDIPFNEKSCTVIPKEGVPVVTWE 352 (388)
Q Consensus 279 ~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~-l~~D~Vi~a~G~~p~~~---~--~~l~~~~~~gi~l~~~~~~~~~~~ 352 (388)
+.++++..++++. ..+.+ .++++ ++||.||+|+|++||+. . .++.+ +++.+.+|+... .-..+
T Consensus 238 ~~v~~i~~~~~~~-~~v~~--------~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~-~~G~i~vd~~~~-t~~~~ 306 (500)
T 1onf_A 238 ADVVEIKKVSDKN-LSIHL--------SDGRIYEHFDHVIYCVGRSPDTENLKLEKLNVET-NNNYIVVDENQR-TSVNN 306 (500)
T ss_dssp CCEEEEEESSTTC-EEEEE--------TTSCEEEEESEEEECCCBCCTTTTSSCTTTTCCB-SSSCEEECTTCB-CSSSS
T ss_pred CEEEEEEEcCCce-EEEEE--------CCCcEEEECCEEEECCCCCcCCCCCCchhcCccc-cCCEEEECCCcc-cCCCC
Confidence 9999998643332 34443 23345 99999999999999972 1 34555 444577887653 22346
Q ss_pred hhHHhHHH
Q psy4525 353 GWKAIDKE 360 (388)
Q Consensus 353 ~w~~~~~~ 360 (388)
.|...|+.
T Consensus 307 iya~GD~~ 314 (500)
T 1onf_A 307 IYAVGDCC 314 (500)
T ss_dssp EEECSTTE
T ss_pred EEEEeccc
Confidence 77777766
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-25 Score=218.91 Aligned_cols=240 Identities=14% Similarity=0.165 Sum_probs=160.7
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee-eCCCCCC--------------------------cch
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR-YGVAPDH--------------------------PEV 65 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~-~g~~p~~--------------------------~~~ 65 (388)
.+||+||||||||+++|..|++ .|.+|+|||+. .+||.|. .||.|.. ...
T Consensus 4 ~~dVvIIGgG~aGl~aA~~l~~--~g~~V~liE~~-~~GG~~~~~gciP~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 80 (463)
T 2r9z_A 4 HFDLIAIGGGSGGLAVAEKAAA--FGKRVALIESK-ALGGTCVNVGCVPKKVMWYASHLAEAVRDAPGFGVQASGGTLDW 80 (463)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTBCCC---CCH
T ss_pred cCcEEEECCCHHHHHHHHHHHh--CCCcEEEEcCC-CCCCcCcCcCchhHHHHHHHHHHHHHHhhhhhcCcccCCCCcCH
Confidence 4799999999999999999999 89999999998 6788763 2332210 011
Q ss_pred h-----------HHHHHHHHhhcCCCcEEEceEEEEE---EeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecc
Q psy4525 66 K-----------NVINTFTKTGDNPRVNFYGNICLGQ---DISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISAR 131 (388)
Q Consensus 66 ~-----------~~~~~~~~~~~~~~i~~~~~~~v~~---~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~ 131 (388)
. .+...+...+.+.+++++.+..... .+.++.....||+||+|||+.+ +.|++||.+ .+++..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~~g~~~~~d~lviAtGs~p-~~p~i~G~~--~~~~~~ 157 (463)
T 2r9z_A 81 PRLVAGRDRYIGAINSFWDGYVERLGITRVDGHARFVDAHTIEVEGQRLSADHIVIATGGRP-IVPRLPGAE--LGITSD 157 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTEEEEEEEEEECCCEEE-CCCSCTTGG--GSBCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEeEEEEccCCEEEECCEEEEcCEEEECCCCCC-CCCCCCCcc--ceecHH
Confidence 1 1222233445667898887654321 2444333358999999999987 467788763 344444
Q ss_pred cccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCccccc
Q psy4525 132 SFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVA 211 (388)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~ 211 (388)
++... ...+++++|||+|.+|+|+|..|. +.+ .+|+++.|++.+...
T Consensus 158 ~~~~~------------~~~~~~vvVvGgG~~g~e~A~~l~--------------------~~G-~~Vtlv~~~~~~l~~ 204 (463)
T 2r9z_A 158 GFFAL------------QQQPKRVAIIGAGYIGIELAGLLR--------------------SFG-SEVTVVALEDRLLFQ 204 (463)
T ss_dssp HHHHC------------SSCCSEEEEECCSHHHHHHHHHHH--------------------HTT-CEEEEECSSSSSSTT
T ss_pred HHhhh------------hccCCEEEEECCCHHHHHHHHHHH--------------------hcC-CEEEEEEcCCccccc
Confidence 44321 123689999999999999999876 233 579999998765433
Q ss_pred CCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCc
Q psy4525 212 FTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGA 291 (388)
Q Consensus 212 ~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~ 291 (388)
+.+ ++. +.+.+.+. +.||++++++.++++..++++
T Consensus 205 ~~~-~~~-------------------------------~~l~~~l~------------~~gv~i~~~~~v~~i~~~~~~- 239 (463)
T 2r9z_A 205 FDP-LLS-------------------------------ATLAENMH------------AQGIETHLEFAVAALERDAQG- 239 (463)
T ss_dssp SCH-HHH-------------------------------HHHHHHHH------------HTTCEEESSCCEEEEEEETTE-
T ss_pred cCH-HHH-------------------------------HHHHHHHH------------HCCCEEEeCCEEEEEEEeCCe-
Confidence 221 111 12222222 578999999999999864322
Q ss_pred eeEEEEccCccccCCcee-EEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 292 ITGINFANQQALVTEDTE-LIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 292 v~~v~~~~~~~~~~~~~~-~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
..+.+ .+++ ++++|.||+|+|++||... .++++++++.+.+|+..
T Consensus 240 -~~v~~--------~~G~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~ 290 (463)
T 2r9z_A 240 -TTLVA--------QDGTRLEGFDSVIWAVGRAPNTRDLGLEAAGIEVQSNGMVPTDAYQ 290 (463)
T ss_dssp -EEEEE--------TTCCEEEEESEEEECSCEEESCTTSCHHHHTCCCCTTSCCCCCTTS
T ss_pred -EEEEE--------eCCcEEEEcCEEEECCCCCcCCCCCCchhcCCccCCCCCEeECCCC
Confidence 33433 3445 7999999999999999831 35666665568887653
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.4e-25 Score=217.46 Aligned_cols=247 Identities=14% Similarity=0.215 Sum_probs=166.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee-eCCCCCCc---------------------chhH---
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR-YGVAPDHP---------------------EVKN--- 67 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~-~g~~p~~~---------------------~~~~--- 67 (388)
.+||+||||||||+++|..|++ .|.+|+|||+.+.+||.|. .|+.|... ....
T Consensus 4 ~~DVvVIGgG~aGl~aA~~l~~--~G~~V~liEk~~~~GG~~~~~gciPsk~l~~~a~~~~~~~~~~~~~~~~~~~~~~~ 81 (466)
T 3l8k_A 4 KYDVVVIGAGGAGYHGAFRLAK--AKYNVLMADPKGELGGNCLYSGCVPSKTVREVIQTAWRLTNIANVKIPLDFSTVQD 81 (466)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECTTSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHCSCCCCCHHHHHH
T ss_pred cceEEEECCCHHHHHHHHHHHh--CCCeEEEEECCCCCCCcccccCCCchHHHHHHHHHHHHHHhcccCCCCcCHHHHHH
Confidence 3799999999999999999999 8999999999889999873 35543210 1111
Q ss_pred -------HH--HHHHHhhcCCCcEEEceEEEEE-----Eeeeccc-c--cccCEEEEeeCCCCCCCCCCCCCCCCCeeec
Q psy4525 68 -------VI--NTFTKTGDNPRVNFYGNICLGQ-----DISLGDL-T--NAYHAVVLTYGADNDKKLNIPGEDGKNIISA 130 (388)
Q Consensus 68 -------~~--~~~~~~~~~~~i~~~~~~~v~~-----~~~~~~~-~--~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~ 130 (388)
+. ..+...+++.+++++.+..... .+...+. . ..||+||+|||+.+ +.|++||.+ ++++.
T Consensus 82 ~~~~~~~l~~~~~~~~~~~~~~v~~~~g~v~~id~~~~~V~~~~g~~~~~~~d~lviAtG~~p-~~p~i~G~~--~~~t~ 158 (466)
T 3l8k_A 82 RKDYVQELRFKQHKRNMSQYETLTFYKGYVKIKDPTHVIVKTDEGKEIEAETRYMIIASGAET-AKLRLPGVE--YCLTS 158 (466)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTEEEESEEEEEEETTEEEEEETTSCEEEEEEEEEEECCCEEE-CCCCCTTGG--GSBCH
T ss_pred HHHhheeccccchHHHHHHhCCCEEEEeEEEEecCCeEEEEcCCCcEEEEecCEEEECCCCCc-cCCCCCCcc--ceEeH
Confidence 11 4455567778999987754322 1333322 3 57999999999987 578888876 57766
Q ss_pred ccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccc
Q psy4525 131 RSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQV 210 (388)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~ 210 (388)
.++...... ....+++++|||+|++|+|+|..|. +.+ .+|+++.|.+.+..
T Consensus 159 ~~~~~~~~~--------l~~~~~~vvViGgG~~g~e~A~~l~--------------------~~g-~~Vtlv~~~~~~l~ 209 (466)
T 3l8k_A 159 DDIFGYKTS--------FRKLPQDMVIIGAGYIGLEIASIFR--------------------LMG-VQTHIIEMLDRALI 209 (466)
T ss_dssp HHHHSTTCS--------CCSCCSEEEEECCSHHHHHHHHHHH--------------------HTT-CEEEEECSSSSSCT
T ss_pred HHHHHHHHH--------HhhCCCeEEEECCCHHHHHHHHHHH--------------------HcC-CEEEEEEeCCcCCC
Confidence 665521111 1123689999999999999999876 233 57999999987655
Q ss_pred cCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCC
Q psy4525 211 AFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNG 290 (388)
Q Consensus 211 ~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~ 290 (388)
.+.++++. +.+.+.+ . |++++++.++++..++++
T Consensus 210 ~~~d~~~~-----------------------------------~~l~~~l---------~--v~i~~~~~v~~i~~~~~~ 243 (466)
T 3l8k_A 210 TLEDQDIV-----------------------------------NTLLSIL---------K--LNIKFNSPVTEVKKIKDD 243 (466)
T ss_dssp TSCCHHHH-----------------------------------HHHHHHH---------C--CCEECSCCEEEEEEEETT
T ss_pred CCCCHHHH-----------------------------------HHHHhcC---------E--EEEEECCEEEEEEEcCCC
Confidence 43222222 1111111 2 889999999999864313
Q ss_pred ceeEEEEccCccccCCceeEEecceEEEccccCCccC--C--CCCcccCCCccccCCCC
Q psy4525 291 AITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCV--D--SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 291 ~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~--~--~~l~~~~~~gi~l~~~~ 345 (388)
.+ .+.+.+ ..++.+++++|.||+|+|++||+. . .++++++++ +.+|+..
T Consensus 244 ~v-~v~~~~----~~G~~~~i~~D~vi~a~G~~p~~~l~l~~~gl~~~~~G-i~vd~~~ 296 (466)
T 3l8k_A 244 EY-EVIYST----KDGSKKSIFTNSVVLAAGRRPVIPEGAREIGLSISKTG-IVVDETM 296 (466)
T ss_dssp EE-EEEECC----TTSCCEEEEESCEEECCCEEECCCTTTGGGTCCBCSSS-BCCCTTC
T ss_pred cE-EEEEEe----cCCceEEEEcCEEEECcCCCcccccchhhcCceeCCCC-EeECCCc
Confidence 33 244421 023335899999999999999985 2 356666554 7777543
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.8e-25 Score=217.01 Aligned_cols=248 Identities=15% Similarity=0.205 Sum_probs=160.0
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCc--------------------------
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHP-------------------------- 63 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~-------------------------- 63 (388)
+..+||+||||||||+++|..|++ .|.+|+|||+.+.+||.| +.|+.|...
T Consensus 23 m~~~dVvVIGgG~aGl~aA~~la~--~G~~V~liEk~~~~GG~~~~~gciP~k~l~~~~~~~~~~~~~~~~~g~~~~~~~ 100 (491)
T 3urh_A 23 MMAYDLIVIGSGPGGYVCAIKAAQ--LGMKVAVVEKRSTYGGTCLNVGCIPSKALLHASEMFHQAQHGLEALGVEVANPK 100 (491)
T ss_dssp ---CCEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHSSGGGTEECCCCE
T ss_pred cccCCEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCCccccccchhhHHHHHHHHHHHHHHhhHhhcCcccCCCc
Confidence 345899999999999999999999 899999999988999976 334332210
Q ss_pred -ch-----------hHHHHHHHHhhcCCCcEEEceEEEEE-----Eeeeccc---ccccCEEEEeeCCCCCCCCCCCCCC
Q psy4525 64 -EV-----------KNVINTFTKTGDNPRVNFYGNICLGQ-----DISLGDL---TNAYHAVVLTYGADNDKKLNIPGED 123 (388)
Q Consensus 64 -~~-----------~~~~~~~~~~~~~~~i~~~~~~~v~~-----~~~~~~~---~~~yd~lvlAtG~~~~~~~~i~g~~ 123 (388)
.. ..+...+...+++.+++++.+..... .+...+. ...||+||||||+.++ ++||.+
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lViATGs~p~---~ipg~~ 177 (491)
T 3urh_A 101 LNLQKMMAHKDATVKSNVDGVSFLFKKNKIDGFQGTGKVLGQGKVSVTNEKGEEQVLEAKNVVIATGSDVA---GIPGVE 177 (491)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECSSSEEEEECTTSCEEEEECSEEEECCCEECC---CBTTBC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEecCCEEEEEeCCCceEEEEeCEEEEccCCCCC---CCCCcc
Confidence 00 11112233445567888876654321 1232222 2479999999998753 455543
Q ss_pred ----CCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEE
Q psy4525 124 ----GKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSV 199 (388)
Q Consensus 124 ----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V 199 (388)
...+++..++. .....+++++|||+|++|+|+|..|. +.+ .+|
T Consensus 178 ~~~~~~~~~~~~~~~------------~~~~~~~~vvViGgG~~g~E~A~~l~--------------------~~g-~~V 224 (491)
T 3urh_A 178 VAFDEKTIVSSTGAL------------ALEKVPASMIVVGGGVIGLELGSVWA--------------------RLG-AKV 224 (491)
T ss_dssp CCCCSSSEECHHHHT------------SCSSCCSEEEEECCSHHHHHHHHHHH--------------------HHT-CEE
T ss_pred cccCCeeEEehhHhh------------hhhhcCCeEEEECCCHHHHHHHHHHH--------------------HcC-CEE
Confidence 22344443332 12234789999999999999999876 123 479
Q ss_pred EEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecC
Q psy4525 200 NLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLR 279 (388)
Q Consensus 200 ~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~ 279 (388)
+++.+.+.+...+.+ ++. +.+.+.+. +.||++++++
T Consensus 225 tlv~~~~~~l~~~d~-~~~-------------------------------~~l~~~l~------------~~gV~v~~~~ 260 (491)
T 3urh_A 225 TVVEFLDTILGGMDG-EVA-------------------------------KQLQRMLT------------KQGIDFKLGA 260 (491)
T ss_dssp EEECSSSSSSSSSCH-HHH-------------------------------HHHHHHHH------------HTTCEEECSE
T ss_pred EEEeccccccccCCH-HHH-------------------------------HHHHHHHH------------hCCCEEEECC
Confidence 999998876543321 111 12222222 5799999999
Q ss_pred cceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 280 SPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 280 ~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
.++++..+++ ...+.+.+. .+++.++++||.||+|+|++|+... .++.+++++.+.+|+..
T Consensus 261 ~v~~i~~~~~--~~~v~~~~~---~~g~~~~i~~D~Vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~ 326 (491)
T 3urh_A 261 KVTGAVKSGD--GAKVTFEPV---KGGEATTLDAEVVLIATGRKPSTDGLGLAKAGVVLDSRGRVEIDRHF 326 (491)
T ss_dssp EEEEEEEETT--EEEEEEEET---TSCCCEEEEESEEEECCCCEECCTTSCHHHHTCCBCTTSCBCCCTTC
T ss_pred eEEEEEEeCC--EEEEEEEec---CCCceEEEEcCEEEEeeCCccCCCccCchhcCceECCCCCEeECCCC
Confidence 9999986432 233444321 1244478999999999999999842 35667766667777654
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=99.92 E-value=6.5e-25 Score=217.58 Aligned_cols=247 Identities=15% Similarity=0.162 Sum_probs=162.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCC--------------------------cch
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDH--------------------------PEV 65 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~--------------------------~~~ 65 (388)
.+||+||||||||+++|..|++ .|.+|+|||++ .+||.| ++||.|.. ...
T Consensus 20 ~~dVvIIGgG~aGl~aA~~la~--~G~~V~liE~~-~~GG~~~~~gc~p~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 96 (478)
T 3dk9_A 20 SYDYLVIGGGSGGLASARRAAE--LGARAAVVESH-KLGGTCVNVGCVPKKVMWNTAVHSEFMHDHADYGFPSCEGKFNW 96 (478)
T ss_dssp ECSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHTTTTTTTSCCCCCCCCH
T ss_pred CCCEEEECCCHHHHHHHHHHHh--CCCeEEEEecC-CCCCcccccCccchHHHHHHHHHHHHHHHHHhcCccCCCCccCH
Confidence 4899999999999999999999 89999999977 677775 33332210 011
Q ss_pred -----------hHHHHHHHHhhcCCCcEEEceEEEEE-----EeeecccccccCEEEEeeCCCCCCCC---CCCCCCCCC
Q psy4525 66 -----------KNVINTFTKTGDNPRVNFYGNICLGQ-----DISLGDLTNAYHAVVLTYGADNDKKL---NIPGEDGKN 126 (388)
Q Consensus 66 -----------~~~~~~~~~~~~~~~i~~~~~~~v~~-----~~~~~~~~~~yd~lvlAtG~~~~~~~---~i~g~~~~~ 126 (388)
+.+...+...++..+++++.+..... .+..+.....||+||+|||+.+ +.+ ++||.+ .
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~~~v~~~g~~~~~d~lviAtG~~p-~~p~~~~i~G~~--~ 173 (478)
T 3dk9_A 97 RVIKEKRDAYVSRLNAIYQNNLTKSHIEIIRGHAAFTSDPKPTIEVSGKKYTAPHILIATGGMP-STPHESQIPGAS--L 173 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEECSCSSCEEEETTEEEECSCEEECCCEEE-CCCCTTTSTTGG--G
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEeEEEEeeCCeEEEEECCEEEEeeEEEEccCCCC-CCCCcCCCCCCc--e
Confidence 12222334455667888876654321 2333333458999999999987 466 788765 3
Q ss_pred eeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecC
Q psy4525 127 IISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRG 206 (388)
Q Consensus 127 v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~ 206 (388)
+++..++.. ....+++++|||+|++|+|+|..|. +.+ .+|+++.|.+
T Consensus 174 ~~~~~~~~~------------~~~~~~~vvViGgG~~g~E~A~~l~--------------------~~g-~~Vtlv~~~~ 220 (478)
T 3dk9_A 174 GITSDGFFQ------------LEELPGRSVIVGAGYIAVEMAGILS--------------------ALG-SKTSLMIRHD 220 (478)
T ss_dssp SBCHHHHTT------------CCSCCSEEEEECCSHHHHHHHHHHH--------------------HTT-CEEEEECSSS
T ss_pred eEchHHhhc------------hhhcCccEEEECCCHHHHHHHHHHH--------------------HcC-CeEEEEEeCC
Confidence 333333331 1123689999999999999999876 233 5799999988
Q ss_pred cccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeee
Q psy4525 207 ALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKL 286 (388)
Q Consensus 207 ~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~ 286 (388)
.+...+. +++. +.+.+.+. +.||++++++.++++..
T Consensus 221 ~~l~~~d-~~~~-------------------------------~~~~~~l~------------~~gv~i~~~~~v~~i~~ 256 (478)
T 3dk9_A 221 KVLRSFD-SMIS-------------------------------TNCTEELE------------NAGVEVLKFSQVKEVKK 256 (478)
T ss_dssp SSCTTSC-HHHH-------------------------------HHHHHHHH------------HTTCEEETTEEEEEEEE
T ss_pred ccccccC-HHHH-------------------------------HHHHHHHH------------HCCCEEEeCCEEEEEEE
Confidence 7653322 1211 12222222 57999999999999987
Q ss_pred CCCCceeEEEEccCccccCCc--eeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 287 NDNGAITGINFANQQALVTED--TELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 287 ~~~~~v~~v~~~~~~~~~~~~--~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
++++....+.+.+.. .++ ++++++|.||+|+|++||+.. .++++++++++.+|+..
T Consensus 257 ~~~~~~~~v~~~~~~---~g~~~g~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~ 319 (478)
T 3dk9_A 257 TLSGLEVSMVTAVPG---RLPVMTMIPDVDCLLWAIGRVPNTKDLSLNKLGIQTDDKGHIIVDEFQ 319 (478)
T ss_dssp CSSSEEEEEEECCTT---SCCEEEEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTCCBCCCTTC
T ss_pred cCCCcEEEEEEccCC---CCcccceEEEcCEEEEeeccccCCCCCCchhcCCeeCCCCCEeeCCCc
Confidence 544523345443210 121 378999999999999999842 35666666668877654
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=6.3e-25 Score=218.77 Aligned_cols=243 Identities=14% Similarity=0.131 Sum_probs=165.7
Q ss_pred CcEEEECccHHHHHHHHHHHhhCC-CCcEEEEcCCCCCCCce-eeCCCCCC----------------------------c
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLP-QSTVDIYEKLPVPFGLV-RYGVAPDH----------------------------P 63 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~-g~~v~lie~~~~~gg~~-~~g~~p~~----------------------------~ 63 (388)
++|+|||||+||+++|..|++..+ |.+|+|||+++ +||.| ++|+.|.. .
T Consensus 3 ~dVvIIGgG~aGl~aA~~l~~~~~~G~~V~liE~~~-~GG~~~~~g~~psk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 81 (499)
T 1xdi_A 3 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCDG-IGGAAVLDDCVPSKTFIASTGLRTELRRAPHLGFHIDFDDAKI 81 (499)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHTTTTTTTBC------CB
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCCcCEEEEEeCCC-cCCcccCcCccchHHHHHHHHHHHHHHHHHhCCCccccCCCcc
Confidence 689999999999999999999433 99999999997 88765 33322210 0
Q ss_pred chhH-----------HHHHHHHhhcCCCcEEEceEEEE---------EE--eeeccc---ccccCEEEEeeCCCCCCCCC
Q psy4525 64 EVKN-----------VINTFTKTGDNPRVNFYGNICLG---------QD--ISLGDL---TNAYHAVVLTYGADNDKKLN 118 (388)
Q Consensus 64 ~~~~-----------~~~~~~~~~~~~~i~~~~~~~v~---------~~--~~~~~~---~~~yd~lvlAtG~~~~~~~~ 118 (388)
.... +...+.+.+++.+++++.++... .. +...+. ...||+||+|||+.+ +.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~~~~~~~~~V~~~~g~~~~~~~d~lviATGs~p-~~p~ 160 (499)
T 1xdi_A 82 SLPQIHARVKTLAAAQSADITAQLLSMGVQVIAGRGELIDSTPGLARHRIKATAADGSTSEHEADVVLVATGASP-RILP 160 (499)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEECCSSSCCSSEEEEEECTTSCEEEEEESEEEECCCEEE-CCCG
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCcccCCCCEEEEEeCCCcEEEEEeCEEEEcCCCCC-CCCC
Confidence 1111 22234556667889988776432 11 222223 348999999999987 4777
Q ss_pred CCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcE
Q psy4525 119 IPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKS 198 (388)
Q Consensus 119 i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (388)
++|.+..++++..++... ...+++++|||+|.+|+|+|..|. ..+ .+
T Consensus 161 i~g~~~~~v~~~~~~~~~------------~~~~~~vvViGgG~ig~E~A~~l~--------------------~~g-~~ 207 (499)
T 1xdi_A 161 SAQPDGERILTWRQLYDL------------DALPDHLIVVGSGVTGAEFVDAYT--------------------ELG-VP 207 (499)
T ss_dssp GGCCCSSSEEEGGGGGGC------------SSCCSSEEEESCSHHHHHHHHHHH--------------------HTT-CC
T ss_pred CCCCCcCcEEehhHhhhh------------hccCCeEEEECCCHHHHHHHHHHH--------------------HcC-Ce
Confidence 888776677776665521 123689999999999999999775 233 47
Q ss_pred EEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEec
Q psy4525 199 VNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFL 278 (388)
Q Consensus 199 V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~ 278 (388)
|+++.|.+.+...+. +++. +.+.+.+. +.||+++++
T Consensus 208 Vtlv~~~~~~l~~~d-~~~~-------------------------------~~l~~~l~------------~~GV~i~~~ 243 (499)
T 1xdi_A 208 VTVVASQDHVLPYED-ADAA-------------------------------LVLEESFA------------ERGVRLFKN 243 (499)
T ss_dssp EEEECSSSSSSCCSS-HHHH-------------------------------HHHHHHHH------------HTTCEEETT
T ss_pred EEEEEcCCccccccC-HHHH-------------------------------HHHHHHHH------------HCCCEEEeC
Confidence 999999877643322 1211 12222222 579999999
Q ss_pred CcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 279 RSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 279 ~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
+.++++..++ +.+ .+. ++++++++||.||+|+|++||+.. .++++++++++.+|+..
T Consensus 244 ~~V~~i~~~~-~~v-~v~--------~~~g~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~Vd~~~ 305 (499)
T 1xdi_A 244 ARAASVTRTG-AGV-LVT--------MTDGRTVEGSHALMTIGSVPNTSGLGLERVGIQLGRGNYLTVDRVS 305 (499)
T ss_dssp CCEEEEEECS-SSE-EEE--------ETTSCEEEESEEEECCCEEECCSSSCTTTTTCCCBTTTBCCCCSSS
T ss_pred CEEEEEEEeC-CEE-EEE--------ECCCcEEEcCEEEECCCCCcCCCcCCchhcCceECCCCCEEECCCc
Confidence 9999998653 233 232 245568999999999999999831 35666655558877653
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.4e-25 Score=216.83 Aligned_cols=243 Identities=10% Similarity=0.115 Sum_probs=162.1
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCc--------------------------chh
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHP--------------------------EVK 66 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~--------------------------~~~ 66 (388)
++|+||||||||+++|..|++ .|.+|+|||+. .+||.| .+++.|... ...
T Consensus 4 ~dvvIIGaG~aGl~aA~~l~~--~G~~V~liE~~-~~gG~~~~~g~~psk~ll~~~~~~~~~~~~~~~~g~~~~~~~~~~ 80 (464)
T 2a8x_A 4 YDVVVLGAGPGGYVAAIRAAQ--LGLSTAIVEPK-YWGGVCLNVGCIPSKALLRNAELVHIFTKDAKAFGISGEVTFDYG 80 (464)
T ss_dssp EEEEEECCSHHHHHHHHHHHH--TTCCEEEECSS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHHHTTTTTEEECCEECHH
T ss_pred CCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCC-CCCCcccccCchhhHHHHHHHHHHHHHHHHHHhcCCCCCCccCHH
Confidence 689999999999999999999 89999999998 677765 233322210 011
Q ss_pred H-----------HHHHHHHhhcCCCcEEEceEEEE-----EEeeeccc---ccccCEEEEeeCCCCCCCCCCCCCCCCCe
Q psy4525 67 N-----------VINTFTKTGDNPRVNFYGNICLG-----QDISLGDL---TNAYHAVVLTYGADNDKKLNIPGEDGKNI 127 (388)
Q Consensus 67 ~-----------~~~~~~~~~~~~~i~~~~~~~v~-----~~~~~~~~---~~~yd~lvlAtG~~~~~~~~i~g~~~~~v 127 (388)
. +...+.+.+++.+++++.++.+. ..+...+. ...||+||+|||+.+ +.++++|.+.. +
T Consensus 81 ~~~~~~~~~~~~l~~~l~~~~~~~gv~~~~g~~~~id~~~v~V~~~~G~~~~~~~d~lViAtG~~~-~~~~~~g~~~~-~ 158 (464)
T 2a8x_A 81 IAYDRSRKVAEGRVAGVHFLMKKNKITEIHGYGTFADANTLLVDLNDGGTESVTFDNAIIATGSST-RLVPGTSLSAN-V 158 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEESSSSEEEEEETTSCCEEEEEEEEEECCCEEE-CCCTTCCCBTT-E
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEEeCCCceEEEEcCEEEECCCCCC-CCCCCCCCCce-E
Confidence 1 11223445566789998877642 12333333 348999999999987 46777776533 5
Q ss_pred eecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 128 ISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
++..++.. ....+++++|||+|++|+|+|..|. +.+ .+|+++.|.+.
T Consensus 159 ~~~~~~~~------------~~~~~~~vvViGgG~~g~E~A~~l~--------------------~~g-~~Vtlv~~~~~ 205 (464)
T 2a8x_A 159 VTYEEQIL------------SRELPKSIIIAGAGAIGMEFGYVLK--------------------NYG-VDVTIVEFLPR 205 (464)
T ss_dssp ECHHHHHT------------CSSCCSEEEEECCSHHHHHHHHHHH--------------------HTT-CEEEEECSSSS
T ss_pred EecHHHhh------------ccccCCeEEEECCcHHHHHHHHHHH--------------------HcC-CeEEEEEcCCc
Confidence 55544431 1123689999999999999999876 233 47999999977
Q ss_pred ccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeC
Q psy4525 208 LQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLN 287 (388)
Q Consensus 208 ~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~ 287 (388)
+...+. +++. +.+.+.+. +.||++++++.++++..+
T Consensus 206 ~l~~~~-~~~~-------------------------------~~l~~~l~------------~~gv~i~~~~~v~~i~~~ 241 (464)
T 2a8x_A 206 ALPNED-ADVS-------------------------------KEIEKQFK------------KLGVTILTATKVESIADG 241 (464)
T ss_dssp SSTTSC-HHHH-------------------------------HHHHHHHH------------HHTCEEECSCEEEEEEEC
T ss_pred cccccC-HHHH-------------------------------HHHHHHHH------------HcCCEEEeCcEEEEEEEc
Confidence 643322 2221 12222222 579999999999999865
Q ss_pred CCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 288 DNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 288 ~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
+ +.+ .+.+.+ .++.++++||.||+|+|++||+.. .++.+++++++.+|+..
T Consensus 242 ~-~~~-~v~~~~-----~g~~~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~ 297 (464)
T 2a8x_A 242 G-SQV-TVTVTK-----DGVAQELKAEKVLQAIGFAPNVEGYGLDKAGVALTDRKAIGVDDYM 297 (464)
T ss_dssp S-SCE-EEEEES-----SSCEEEEEESEEEECSCEEECCSSSCHHHHTCCBCTTSSBCCCTTS
T ss_pred C-CeE-EEEEEc-----CCceEEEEcCEEEECCCCCccCCCCCchhcCCccCCCCCEeECcCC
Confidence 3 222 333321 234468999999999999999742 34666655568887754
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-24 Score=214.76 Aligned_cols=246 Identities=13% Similarity=0.187 Sum_probs=162.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC------CCCce-eeCCCCCC----------------------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV------PFGLV-RYGVAPDH---------------------- 62 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~------~gg~~-~~g~~p~~---------------------- 62 (388)
..+||+||||||||+++|..|++ .|.+|+|||+.+. +||.| +.||.|..
T Consensus 2 ~~~DVvVIGgG~aGl~aA~~la~--~G~~V~liEk~~~~gG~~~~GG~~~~~gciPsk~l~~~~~~~~~~~~~~~~~g~~ 79 (476)
T 3lad_A 2 QKFDVIVIGAGPGGYVAAIKSAQ--LGLKTALIEKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESFKLHGIS 79 (476)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHH--HTCCEEEEECCBCTTSSBCCSHHHHHHSHHHHHHHHHHHHHHHHHHTTSGGGTEE
T ss_pred CcCCEEEECcCHHHHHHHHHHHh--CCCEEEEEeCCCccCCCCCcCCccccccHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 35899999999999999999999 7999999999863 45544 22332210
Q ss_pred -----cchh-----------HHHHHHHHhhcCCCcEEEceEEEEE-----Eeeeccc---ccccCEEEEeeCCCCCCCCC
Q psy4525 63 -----PEVK-----------NVINTFTKTGDNPRVNFYGNICLGQ-----DISLGDL---TNAYHAVVLTYGADNDKKLN 118 (388)
Q Consensus 63 -----~~~~-----------~~~~~~~~~~~~~~i~~~~~~~v~~-----~~~~~~~---~~~yd~lvlAtG~~~~~~~~ 118 (388)
.... .+...+...+++.+++++.+..... .+...+. ...||+||+|||+.+. .++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lvlAtG~~p~-~~~ 158 (476)
T 3lad_A 80 TGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTLFEGHGKLLAGKKVEVTAADGSSQVLDTENVILASGSKPV-EIP 158 (476)
T ss_dssp CSCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESEEEECSTTCEEEECTTSCEEEECCSCEEECCCEEEC-CCT
T ss_pred cCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCEEEEEcCCCceEEEEcCEEEEcCCCCCC-CCC
Confidence 0011 1112223344556888876664421 2333232 2479999999999873 555
Q ss_pred CCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcE
Q psy4525 119 IPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKS 198 (388)
Q Consensus 119 i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (388)
.++.+...++++.++.. ....+++++|||+|++|+|+|..|. +.+ .+
T Consensus 159 ~~~~~~~~v~~~~~~~~------------~~~~~~~v~ViGgG~~g~e~A~~l~--------------------~~g-~~ 205 (476)
T 3lad_A 159 PAPVDQDVIVDSTGALD------------FQNVPGKLGVIGAGVIGLELGSVWA--------------------RLG-AE 205 (476)
T ss_dssp TSCCCSSSEEEHHHHTS------------CSSCCSEEEEECCSHHHHHHHHHHH--------------------HTT-CE
T ss_pred CCCCCcccEEechhhhc------------cccCCCeEEEECCCHHHHHHHHHHH--------------------HcC-Cc
Confidence 55555667777766552 1224689999999999999999876 233 57
Q ss_pred EEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEec
Q psy4525 199 VNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFL 278 (388)
Q Consensus 199 V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~ 278 (388)
|+++.|.+.+...+.+ ++. +.+.+.+. +.||+++++
T Consensus 206 Vtlv~~~~~~l~~~~~-~~~-------------------------------~~l~~~l~------------~~Gv~v~~~ 241 (476)
T 3lad_A 206 VTVLEAMDKFLPAVDE-QVA-------------------------------KEAQKILT------------KQGLKILLG 241 (476)
T ss_dssp EEEEESSSSSSTTSCH-HHH-------------------------------HHHHHHHH------------HTTEEEEET
T ss_pred EEEEecCCCcCcccCH-HHH-------------------------------HHHHHHHH------------hCCCEEEEC
Confidence 9999999876543221 111 12222222 579999999
Q ss_pred CcceeeeeCCCCceeEEEEccCccccCCce-eEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 279 RSPTEFKLNDNGAITGINFANQQALVTEDT-ELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 279 ~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~-~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
+.++++..+++ . ..+.+.+ +++ +++++|.||+|+|++|++.. .++.+++++++.+|+..
T Consensus 242 ~~v~~i~~~~~-~-~~v~~~~------~~g~~~~~~D~vi~a~G~~p~~~~l~~~~~g~~~~~~G~i~vd~~~ 306 (476)
T 3lad_A 242 ARVTGTEVKNK-Q-VTVKFVD------AEGEKSQAFDKLIVAVGRRPVTTDLLAADSGVTLDERGFIYVDDYC 306 (476)
T ss_dssp CEEEEEEECSS-C-EEEEEES------SSEEEEEEESEEEECSCEEECCTTCCSSCCSCCBCTTSCBCCCTTS
T ss_pred CEEEEEEEcCC-E-EEEEEEe------CCCcEEEECCEEEEeeCCcccCCCCCccccCccccCCCCEeeCCCc
Confidence 99999986542 2 2344432 223 68999999999999999731 45667766667777654
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-24 Score=216.10 Aligned_cols=246 Identities=18% Similarity=0.256 Sum_probs=162.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEc--------CCCCCCCce-eeCCCCCC---------------------
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYE--------KLPVPFGLV-RYGVAPDH--------------------- 62 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie--------~~~~~gg~~-~~g~~p~~--------------------- 62 (388)
.+||+||||||+|+++|..|++. .|.+|+||| +...+||.| +.||.|..
T Consensus 3 ~~dvvVIGgG~aGl~aA~~la~~-~G~~V~liE~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~a~~~~~~~~~~~~g~~ 81 (490)
T 1fec_A 3 AYDLVVIGAGSGGLEAGWNAASL-HKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPKKLMVTGANYMDTIRESAGFGWE 81 (490)
T ss_dssp SEEEEEECCSHHHHHHHHHHHHH-HCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEE
T ss_pred cccEEEECCCHHHHHHHHHHHHH-cCCEEEEEecccccccccCCCcCccccCCCcchhhHHHHHHHHHHHHHHHHhcCcc
Confidence 47999999999999999999983 389999999 355788876 33443321
Q ss_pred -------cchhH-----------HHHHHHHhhcCC-CcEEEceEEEEE---Eeeec-----cc----ccccCEEEEeeCC
Q psy4525 63 -------PEVKN-----------VINTFTKTGDNP-RVNFYGNICLGQ---DISLG-----DL----TNAYHAVVLTYGA 111 (388)
Q Consensus 63 -------~~~~~-----------~~~~~~~~~~~~-~i~~~~~~~v~~---~~~~~-----~~----~~~yd~lvlAtG~ 111 (388)
....+ +...+...+++. +++++.+..... .+.+. +. ...||+||+|||+
T Consensus 82 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gv~~~~g~~~~i~~~~v~v~~~~~~~g~~~~~~~~d~lviAtGs 161 (490)
T 1fec_A 82 LDRESVRPNWKALIAAKNKAVSGINDSYEGMFADTEGLTFHQGFGALQDNHTVLVRESADPNSAVLETLDTEYILLATGS 161 (490)
T ss_dssp CCGGGCEECHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEEEESEEEEEETTEEEEESSSSTTSCEEEEEEEEEEEECCCE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeEEEEeeCCEEEEEeeccCCCCceEEEEcCEEEEeCCC
Confidence 01111 122334455677 999887764322 23331 22 3489999999999
Q ss_pred CCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhh
Q psy4525 112 DNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKL 191 (388)
Q Consensus 112 ~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~ 191 (388)
.+ +.|++||.+ .+++..++.. ....+++++|||+|++|+|+|..|. .+
T Consensus 162 ~p-~~p~i~g~~--~~~~~~~~~~------------~~~~~~~vvViGgG~ig~E~A~~l~-----------------~~ 209 (490)
T 1fec_A 162 WP-QHLGIEGDD--LCITSNEAFY------------LDEAPKRALCVGGGYISIEFAGIFN-----------------AY 209 (490)
T ss_dssp EE-CCCCSBTGG--GCBCHHHHTT------------CSSCCSEEEEECSSHHHHHHHHHHH-----------------HH
T ss_pred CC-CCCCCCCcc--ceecHHHHhh------------hhhcCCeEEEECCCHHHHHHHHHHH-----------------hh
Confidence 87 467788763 4454444431 1123689999999999999999876 11
Q ss_pred hcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCce
Q psy4525 192 STSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSK 271 (388)
Q Consensus 192 ~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (388)
. ....+|++++|.+.+...+.+ ++ .+.+.+.+. +.
T Consensus 210 ~-~~g~~Vtlv~~~~~~l~~~d~-~~-------------------------------~~~l~~~l~------------~~ 244 (490)
T 1fec_A 210 K-ARGGQVDLAYRGDMILRGFDS-EL-------------------------------RKQLTEQLR------------AN 244 (490)
T ss_dssp S-CTTCEEEEEESSSSSSTTSCH-HH-------------------------------HHHHHHHHH------------HT
T ss_pred c-cCcCeEEEEEcCCCcccccCH-HH-------------------------------HHHHHHHHH------------hC
Confidence 0 113579999999875433221 11 112222222 57
Q ss_pred eEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccC---C--CCCcccCCCccccCCCC
Q psy4525 272 YFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCV---D--SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 272 gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~---~--~~l~~~~~~gi~l~~~~ 345 (388)
||++++++.++++..++++. ..+++ .++++++||.||+|+|++||+. . .++.+++++++.+|+..
T Consensus 245 GV~i~~~~~v~~i~~~~~~~-~~v~~--------~~G~~i~~D~vv~a~G~~p~~~~L~l~~~gl~~~~~G~I~Vd~~~ 314 (490)
T 1fec_A 245 GINVRTHENPAKVTKNADGT-RHVVF--------ESGAEADYDVVMLAIGRVPRSQTLQLEKAGVEVAKNGAIKVDAYS 314 (490)
T ss_dssp TEEEEETCCEEEEEECTTSC-EEEEE--------TTSCEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTC
T ss_pred CCEEEeCCEEEEEEEcCCCE-EEEEE--------CCCcEEEcCEEEEccCCCcCccccCchhcCccCCCCCCEEECCCC
Confidence 99999999999998654332 34443 3345899999999999999973 1 35666666668887654
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-24 Score=204.61 Aligned_cols=245 Identities=17% Similarity=0.189 Sum_probs=165.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCC-------CCCCc--chhHHHHHHHHhhcCCCcE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGV-------APDHP--EVKNVINTFTKTGDNPRVN 82 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~-------~p~~~--~~~~~~~~~~~~~~~~~i~ 82 (388)
..++|+||||||||+++|..|++ .|++|+|||+.+.+||.|..-. .|..+ ...++..++.+.+.+++++
T Consensus 13 ~~~dvvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 90 (360)
T 3ab1_A 13 DMRDLTIIGGGPTGIFAAFQCGM--NNISCRIIESMPQLGGQLAALYPEKHIYDVAGFPEVPAIDLVESLWAQAERYNPD 90 (360)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCHHHHHTCTTSEECCSTTCSSEEHHHHHHHHHHHHHTTCCE
T ss_pred CCCCEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCCCcccccCCCcccccCCCCCCCCHHHHHHHHHHHHHHhCCE
Confidence 35799999999999999999999 8999999999988988774211 02222 3467778888888888998
Q ss_pred EEceEEEEE---------Eeeeccc-ccccCEEEEeeCCCC--CCCCCCCC-CC-CC--CeeecccccccccCCCCcccc
Q psy4525 83 FYGNICLGQ---------DISLGDL-TNAYHAVVLTYGADN--DKKLNIPG-ED-GK--NIISARSFVGWYNGLPEDASL 146 (388)
Q Consensus 83 ~~~~~~v~~---------~~~~~~~-~~~yd~lvlAtG~~~--~~~~~i~g-~~-~~--~v~~~~~~~~~~~~~~~~~~~ 146 (388)
++.++.+.. .+...+. ...||+||+|||+.+ ++.+++|| .+ .. +++.. +. +
T Consensus 91 ~~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~~li~AtG~~~~~~~~~~i~g~~~~~~~~~v~~~------~~---~---- 157 (360)
T 3ab1_A 91 VVLNETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAGLGAFEPRKLPQLGNIDHLTGSSVYYA------VK---S---- 157 (360)
T ss_dssp EECSCCEEEEEECTTSCEEEEETTSCEEEEEEEEECCTTCSCCBCCCGGGCCCTTTBTTTEESS------CS---C----
T ss_pred EEcCCEEEEEEECCCceEEEEECCCcEEEeeEEEEccCCCcCCCCCCCCCCchhhCcCceEEEe------cC---C----
Confidence 887755432 1222233 347999999999843 24556777 43 11 12111 00 1
Q ss_pred CcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCc
Q psy4525 147 DLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHV 226 (388)
Q Consensus 147 ~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~ 226 (388)
.....+++|+|||+|++|+|+|..|. ....+|+++.|++.+... +++
T Consensus 158 ~~~~~~~~vvVvG~G~~g~e~A~~l~---------------------~~g~~V~lv~~~~~~~~~---~~~--------- 204 (360)
T 3ab1_A 158 VEDFKGKRVVIVGGGDSALDWTVGLI---------------------KNAASVTLVHRGHEFQGH---GKT--------- 204 (360)
T ss_dssp GGGGTTCEEEEECSSHHHHHHHHHTT---------------------TTSSEEEEECSSSSCSSC---SHH---------
T ss_pred HHHcCCCcEEEECCCHHHHHHHHHHH---------------------hcCCEEEEEEcCCCCCCC---HHH---------
Confidence 11235799999999999999999886 224589999998754221 000
Q ss_pred eEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCC
Q psy4525 227 QTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTE 306 (388)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~ 306 (388)
.+++.+.+ .+.||++++++.++++..+ ++.+..+.+.. ..+
T Consensus 205 ----------------------~~~l~~~~------------~~~gv~i~~~~~v~~i~~~-~~~v~~v~~~~----~~g 245 (360)
T 3ab1_A 205 ----------------------AHEVERAR------------ANGTIDVYLETEVASIEES-NGVLTRVHLRS----SDG 245 (360)
T ss_dssp ----------------------HHSSHHHH------------HHTSEEEESSEEEEEEEEE-TTEEEEEEEEE----TTC
T ss_pred ----------------------HHHHHHHh------------hcCceEEEcCcCHHHhccC-CCceEEEEEEe----cCC
Confidence 01111111 1468999999999999864 36666676531 123
Q ss_pred ceeEEecceEEEccccCCccC-C--CCCcccCCCccccCCC
Q psy4525 307 DTELIPSGIAFRSIGYQSRCV-D--SDIPFNEKSCTVIPKE 344 (388)
Q Consensus 307 ~~~~l~~D~Vi~a~G~~p~~~-~--~~l~~~~~~gi~l~~~ 344 (388)
+.+++++|.||+|+|++|+.. . .+++++ .+++.+|+.
T Consensus 246 ~~~~i~~D~vi~a~G~~p~~~~l~~~~~~~~-~g~i~vd~~ 285 (360)
T 3ab1_A 246 SKWTVEADRLLILIGFKSNLGPLARWDLELY-ENALVVDSH 285 (360)
T ss_dssp CEEEEECSEEEECCCBCCSCGGGGGSSCCEE-TTEEECCTT
T ss_pred CeEEEeCCEEEECCCCCCCHHHHHhhccccc-cCeeeecCC
Confidence 346899999999999999862 2 355565 567777764
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-26 Score=222.11 Aligned_cols=234 Identities=14% Similarity=0.138 Sum_probs=157.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCC---CCCCcchhHHHHHHHHhhcCCCcEEEceE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGV---APDHPEVKNVINTFTKTGDNPRVNFYGNI 87 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~---~p~~~~~~~~~~~~~~~~~~~~i~~~~~~ 87 (388)
.++.+|+|||||+||++||..|.. .+.+|+|||+++.++. .+... .+.....+++..+..+++++.+++++.++
T Consensus 7 ~~~~~~vIvGgG~AGl~aA~~L~~--~~~~itlie~~~~~~y-~~~~l~~~l~g~~~~~~l~~~~~~~~~~~~i~~~~~~ 83 (385)
T 3klj_A 7 HKSTKILILGAGPAGFSAAKAALG--KCDDITMINSEKYLPY-YRPRLNEIIAKNKSIDDILIKKNDWYEKNNIKVITSE 83 (385)
T ss_dssp -CBCSEEEECCSHHHHHHHHHHTT--TCSCEEEECSSSSCCB-CGGGHHHHHHSCCCGGGTBSSCHHHHHHTTCEEECSC
T ss_pred cCCCCEEEEcCcHHHHHHHHHHhC--CCCEEEEEECCCCCCc-ccChhhHHHcCCCCHHHccCCCHHHHHHCCCEEEeCC
Confidence 566899999999999999999966 8999999999977541 11110 01112223333334455566799999886
Q ss_pred EEEE------Eeeecccc-cccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcC
Q psy4525 88 CLGQ------DISLGDLT-NAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQ 160 (388)
Q Consensus 88 ~v~~------~~~~~~~~-~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGg 160 (388)
.+.. .+++.+.+ ..||+||+|||+.+ +.|++||.+ ++++.+++...... . .....+++|+|||+
T Consensus 84 ~V~~id~~~~~v~~~~g~~~~yd~lvlAtG~~p-~~p~i~G~~--~v~~~~~~~d~~~l----~--~~l~~~~~vvVIGg 154 (385)
T 3klj_A 84 FATSIDPNNKLVTLKSGEKIKYEKLIIASGSIA-NKIKVPHAD--EIFSLYSYDDALKI----K--DECKNKGKAFIIGG 154 (385)
T ss_dssp CEEEEETTTTEEEETTSCEEECSEEEECCCEEE-CCCCCTTCS--CEECCSSHHHHHHH----H--HHHHHHSCEEEECC
T ss_pred EEEEEECCCCEEEECCCCEEECCEEEEecCCCc-CCCCCCCCC--CeEEeCCHHHHHHH----H--HHhhcCCeEEEECC
Confidence 5532 24555443 48999999999987 578899987 77766554422110 0 00112689999999
Q ss_pred ChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchh
Q psy4525 161 GNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHE 240 (388)
Q Consensus 161 G~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~ 240 (388)
|++|+|+|..|. +.+ .+||++.|.+.+.....++++.+
T Consensus 155 G~~g~E~A~~l~--------------------~~g-~~Vtvv~~~~~~l~~~~~~~~~~--------------------- 192 (385)
T 3klj_A 155 GILGIELAQAII--------------------DSG-TPASIGIILEYPLERQLDRDGGL--------------------- 192 (385)
T ss_dssp SHHHHHHHHHHH--------------------HHT-CCEEEECSSSSSCTTTSCHHHHH---------------------
T ss_pred CHHHHHHHHHHH--------------------hCC-CeEEEEEcCCccchhhcCHHHHH---------------------
Confidence 999999999886 223 47999999987655433233221
Q ss_pred hhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEcc
Q psy4525 241 ASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSI 320 (388)
Q Consensus 241 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~ 320 (388)
.+.+.+. +.||+++++..++++ +++++||.||+|+
T Consensus 193 ----------~~~~~l~------------~~gV~~~~~~~v~~i-----------------------g~~~~~D~vv~a~ 227 (385)
T 3klj_A 193 ----------FLKDKLD------------RLGIKIYTNSNFEEM-----------------------GDLIRSSCVITAV 227 (385)
T ss_dssp ----------HHHHHHH------------TTTCEEECSCCGGGC-----------------------HHHHHHSEEEECC
T ss_pred ----------HHHHHHH------------hCCCEEEeCCEEEEc-----------------------CeEEecCeEEECc
Confidence 1222222 578999988887766 2368999999999
Q ss_pred ccCCccC-C--CCCcccCCCccccCCCC
Q psy4525 321 GYQSRCV-D--SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 321 G~~p~~~-~--~~l~~~~~~gi~l~~~~ 345 (388)
|++||+. . .++..+ +|+.+|+..
T Consensus 228 G~~p~~~~~~~~gl~~~--~gi~vd~~~ 253 (385)
T 3klj_A 228 GVKPNLDFIKDTEIASK--RGILVNDHM 253 (385)
T ss_dssp CEEECCGGGTTSCCCBS--SSEEECTTC
T ss_pred CcccChhhhhhcCCCcC--CCEEECCCc
Confidence 9999963 2 345543 678887654
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-24 Score=218.39 Aligned_cols=164 Identities=16% Similarity=0.217 Sum_probs=119.4
Q ss_pred CCcEEEECccHHHHHHHHHHH-hhCCCCcEEEEcCCCCCCCceeeCCCCCC---------------------------cc
Q psy4525 13 KPNVCIVGSGPAGFYCAQQIL-KLLPQSTVDIYEKLPVPFGLVRYGVAPDH---------------------------PE 64 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~-~~~~g~~v~lie~~~~~gg~~~~g~~p~~---------------------------~~ 64 (388)
.++|+|||||+||+++|..|+ + .|.+|+|||+.+.+||.|.....|.. ..
T Consensus 8 ~~dVvIIGaG~aGl~aA~~L~~~--~G~~v~viE~~~~~GGtw~~~~ypg~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~ 85 (540)
T 3gwf_A 8 TVDAVVIGAGFGGIYAVHKLHHE--LGLTTVGFDKADGPGGTWYWNRYPGALSDTESHLYRFSFDRDLLQESTWKTTYIT 85 (540)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHT--TCCCEEEEESSSSSCTHHHHCCCTTCEEEEEGGGSSCCSCHHHHHHCCCSBSEEE
T ss_pred CCCEEEECcCHHHHHHHHHHHHc--CCCCEEEEECCCCCCCcccccCCCCceecCCcceeeeccccccccCCCCcccCCC
Confidence 479999999999999999999 7 89999999999999998843211211 12
Q ss_pred hhHHHHHHHHhhcCCCc--EEEceEEEEE----------Eeeecccc-cccCEEEEeeCC--CCCCCCCCCCCC-CC-Ce
Q psy4525 65 VKNVINTFTKTGDNPRV--NFYGNICLGQ----------DISLGDLT-NAYHAVVLTYGA--DNDKKLNIPGED-GK-NI 127 (388)
Q Consensus 65 ~~~~~~~~~~~~~~~~i--~~~~~~~v~~----------~~~~~~~~-~~yd~lvlAtG~--~~~~~~~i~g~~-~~-~v 127 (388)
..++..++.+.++++++ ++++++.|.. .++..+++ ..||+||+|||. .+ +.|++||.+ .. .+
T Consensus 86 ~~ei~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~~~G~~i~ad~lV~AtG~~s~p-~~p~ipG~~~f~g~~ 164 (540)
T 3gwf_A 86 QPEILEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTTDHGEVYRAKYVVNAVGLLSAI-NFPNLPGLDTFEGET 164 (540)
T ss_dssp HHHHHHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEETTSCEEEEEEEEECCCSCCSB-CCCCCTTGGGCCSEE
T ss_pred HHHHHHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEEcCCCEEEeCEEEECCcccccC-CCCCCCCccccCCCE
Confidence 45677777777777777 6776655532 23333433 479999999995 44 577888865 22 23
Q ss_pred eecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 128 ISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
++...+.. .....+|+|+|||+|.+|+|+|..|+ ..+.+||++.|++.
T Consensus 165 ~~~~~~~~-----------~~~~~~krV~VIG~G~sgve~a~~l~---------------------~~~~~Vtv~~r~~~ 212 (540)
T 3gwf_A 165 IHTAAWPE-----------GKSLAGRRVGVIGTGSTGQQVITSLA---------------------PEVEHLTVFVRTPQ 212 (540)
T ss_dssp EEGGGCCS-----------SCCCTTSEEEEECCSHHHHHHHHHHT---------------------TTCSEEEEEESSCC
T ss_pred EEeecCCC-----------ccccccceEEEECCCchHHHHHHHHH---------------------hhCCEEEEEECCCC
Confidence 44433321 23356899999999999999999887 33568999999998
Q ss_pred cccc
Q psy4525 208 LQVA 211 (388)
Q Consensus 208 ~~~~ 211 (388)
+..+
T Consensus 213 ~i~p 216 (540)
T 3gwf_A 213 YSVP 216 (540)
T ss_dssp CEEE
T ss_pred cccc
Confidence 7554
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-24 Score=213.31 Aligned_cols=248 Identities=17% Similarity=0.204 Sum_probs=162.0
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee-eCCCCCCc----------------------------
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR-YGVAPDHP---------------------------- 63 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~-~g~~p~~~---------------------------- 63 (388)
.++|+||||||||+++|..|++ .|.+|+|||+.+.+||.|. .++.|...
T Consensus 5 ~~dVvIIGgG~aGl~aA~~l~~--~G~~V~liE~~~~~GG~~~~~g~~psk~l~~~~~~~~~~~~~~~~~gi~~~~~~~~ 82 (478)
T 1v59_A 5 SHDVVIIGGGPAGYVAAIKAAQ--LGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDVNGDIKI 82 (478)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEECSCEEE
T ss_pred cCCEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCcCCccceeccHHHHHHHHHHHHHHHHHHHHHhcCcccCCCCcc
Confidence 3799999999999999999999 8999999999888888762 23222110
Q ss_pred chhHH-----------HHHHHHhhcCCCcEEEceEEEE-----EEeeecc---cc------cccCEEEEeeCCCCCCCCC
Q psy4525 64 EVKNV-----------INTFTKTGDNPRVNFYGNICLG-----QDISLGD---LT------NAYHAVVLTYGADNDKKLN 118 (388)
Q Consensus 64 ~~~~~-----------~~~~~~~~~~~~i~~~~~~~v~-----~~~~~~~---~~------~~yd~lvlAtG~~~~~~~~ 118 (388)
...++ ...+.+.+++.+++++.++.+. ..+...+ .. ..||+||+|||+.+. .
T Consensus 83 ~~~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~V~~~~G~~~~~~~~~~i~~d~lViAtGs~p~---~ 159 (478)
T 1v59_A 83 NVANFQKAKDDAVKQLTGGIELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNIIVATGSEVT---P 159 (478)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESEEEESSSSEEEEECCTTCTTCCSSCEEEEEEEEEECCCEEEC---C
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEecCCCcccccccceEEeCEEEECcCCCCC---C
Confidence 01111 1123344556789988776543 1233222 23 679999999998763 2
Q ss_pred CCCCCCC--CeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCC
Q psy4525 119 IPGEDGK--NIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRI 196 (388)
Q Consensus 119 i~g~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (388)
+||.+.. .+++..++... ...+++++|||+|++|+|+|..|. +.+
T Consensus 160 ~~g~~~~~~~v~~~~~~~~~------------~~~~~~vvViGgG~~g~e~A~~l~--------------------~~g- 206 (478)
T 1v59_A 160 FPGIEIDEEKIVSSTGALSL------------KEIPKRLTIIGGGIIGLEMGSVYS--------------------RLG- 206 (478)
T ss_dssp CTTCCCCSSSEECHHHHTTC------------SSCCSEEEEECCSHHHHHHHHHHH--------------------HTT-
T ss_pred CCCCCCCCceEEcHHHHHhh------------hccCceEEEECCCHHHHHHHHHHH--------------------HcC-
Confidence 4454333 35555544311 113689999999999999999876 234
Q ss_pred cEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEE
Q psy4525 197 KSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPI 276 (388)
Q Consensus 197 ~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 276 (388)
.+||++.|++.+...+. +++. +.+.+.+. +.||+++
T Consensus 207 ~~Vtlv~~~~~~l~~~~-~~~~-------------------------------~~l~~~l~------------~~gv~i~ 242 (478)
T 1v59_A 207 SKVTVVEFQPQIGASMD-GEVA-------------------------------KATQKFLK------------KQGLDFK 242 (478)
T ss_dssp CEEEEECSSSSSSSSSC-HHHH-------------------------------HHHHHHHH------------HTTCEEE
T ss_pred CEEEEEEeCCccccccC-HHHH-------------------------------HHHHHHHH------------HCCCEEE
Confidence 47999999987644322 2221 12222222 5799999
Q ss_pred ecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccC---C--CCCcccCCCccccCCCC
Q psy4525 277 FLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCV---D--SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 277 ~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~---~--~~l~~~~~~gi~l~~~~ 345 (388)
+++.++++..++++....+.+.+. .++++++++||.||+|+|++||+. . .++.+++++.+.+|+..
T Consensus 243 ~~~~v~~i~~~~~~~~~~v~~~~~---~~g~~~~~~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~ 313 (478)
T 1v59_A 243 LSTKVISAKRNDDKNVVEIVVEDT---KTNKQENLEAEVLLVAVGRRPYIAGLGAEKIGLEVDKRGRLVIDDQF 313 (478)
T ss_dssp CSEEEEEEEEETTTTEEEEEEEET---TTTEEEEEEESEEEECSCEEECCTTSCTTTTTCCBCTTSCBCCCTTS
T ss_pred eCCEEEEEEEecCCCeEEEEEEEc---CCCCceEEECCEEEECCCCCcCCCCCCchhcCceeCCCCCEeECcCC
Confidence 999999998521233344544311 134567899999999999999973 1 35666655558777654
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=7e-25 Score=221.79 Aligned_cols=252 Identities=15% Similarity=0.137 Sum_probs=164.8
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCC----CCCCc-chhHHHHHHHHhhcCCCcEEEceEE
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGV----APDHP-EVKNVINTFTKTGDNPRVNFYGNIC 88 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~----~p~~~-~~~~~~~~~~~~~~~~~i~~~~~~~ 88 (388)
++|+||||||||+++|..|++..++.+|+|||+++.++. .+++. ..... ....+..+...+.++++++++.++.
T Consensus 2 ~~VvIIGgG~AGl~aA~~L~~~~~~~~V~lie~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 80 (565)
T 3ntd_A 2 KKILIIGGVAGGASAAARARRLSETAEIIMFERGEYVSF-ANCGLPYHISGEIAQRSALVLQTPESFKARFNVEVRVKHE 80 (565)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCSSSEEEEECSSSCSSB-CGGGHHHHHTSSSCCGGGGBCCCHHHHHHHHCCEEETTEE
T ss_pred CcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCCccc-cccCchHHhcCCcCChHHhhccCHHHHHHhcCcEEEECCE
Confidence 689999999999999999999555899999999987641 11111 00011 1111222233334446888887777
Q ss_pred EEE------Eeeecc---c---ccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEE
Q psy4525 89 LGQ------DISLGD---L---TNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEAT 156 (388)
Q Consensus 89 v~~------~~~~~~---~---~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vv 156 (388)
+.. .+++.. . ...||+||+|||+.+ +.+++||.+.+++++...+..... .........+++|+
T Consensus 81 V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p-~~p~ipG~~~~~v~~~~~~~~~~~----l~~~~~~~~~~~vv 155 (565)
T 3ntd_A 81 VVAIDRAAKLVTVRRLLDGSEYQESYDTLLLSPGAAP-IVPPIPGVDNPLTHSLRNIPDMDR----ILQTIQMNNVEHAT 155 (565)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEE-CCCCCTTCCSTTEECCSSHHHHHH----HHHHHHHTTCSEEE
T ss_pred EEEEECCCCEEEEEecCCCCeEEEECCEEEECCCCCC-CCCCCCCCCCCCEEEeCCHHHHHH----HHHHHhhCCCCEEE
Confidence 632 133321 2 247999999999987 578899988778877665432100 00000113468999
Q ss_pred EEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccc
Q psy4525 157 ILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLC 236 (388)
Q Consensus 157 VIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~ 236 (388)
|||+|++|+|+|..|. +.+ .+|+++.|.+.+...+. +++.
T Consensus 156 ViGgG~~g~e~A~~l~--------------------~~g-~~Vtlv~~~~~~l~~~~-~~~~------------------ 195 (565)
T 3ntd_A 156 VVGGGFIGLEMMESLH--------------------HLG-IKTTLLELADQVMTPVD-REMA------------------ 195 (565)
T ss_dssp EECCSHHHHHHHHHHH--------------------HTT-CEEEEEESSSSSCTTSC-HHHH------------------
T ss_pred EECCCHHHHHHHHHHH--------------------hcC-CcEEEEEcCCccchhcC-HHHH------------------
Confidence 9999999999999876 233 57999999986644322 2211
Q ss_pred cchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeC------------------CCCceeEEEEc
Q psy4525 237 GVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLN------------------DNGAITGINFA 298 (388)
Q Consensus 237 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~------------------~~~~v~~v~~~ 298 (388)
..+.+.+. +.||++++++.++++..+ .++.+ .+.
T Consensus 196 -------------~~l~~~l~------------~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~-- 247 (565)
T 3ntd_A 196 -------------GFAHQAIR------------DQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHL-SLT-- 247 (565)
T ss_dssp -------------HHHHHHHH------------HTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEE-EEE--
T ss_pred -------------HHHHHHHH------------HCCCEEEeCCeEEEEeccccccccccccccccccccCCCcE-EEE--
Confidence 12222222 579999999999999862 12222 222
Q ss_pred cCccccCCceeEEecceEEEccccCCccC---CCCCcccCCCccccCCCC
Q psy4525 299 NQQALVTEDTELIPSGIAFRSIGYQSRCV---DSDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 299 ~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~---~~~l~~~~~~gi~l~~~~ 345 (388)
..++++++||.||+|+|++|++. ..++++++++++.+|+..
T Consensus 248 ------~~~g~~i~~D~vi~a~G~~p~~~l~~~~g~~~~~~g~i~vd~~~ 291 (565)
T 3ntd_A 248 ------LSNGELLETDLLIMAIGVRPETQLARDAGLAIGELGGIKVNAMM 291 (565)
T ss_dssp ------ETTSCEEEESEEEECSCEEECCHHHHHHTCCBCTTSSBCCCTTC
T ss_pred ------EcCCCEEEcCEEEECcCCccchHHHHhCCcccCCCCCEEECCCc
Confidence 23456899999999999999963 146777777778887653
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-24 Score=214.77 Aligned_cols=172 Identities=15% Similarity=0.208 Sum_probs=119.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCC---------------------------Ccc
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPD---------------------------HPE 64 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~---------------------------~~~ 64 (388)
..++|+|||||+||+++|..|++ .|.+|+|||+.+.+||.|.....|. +..
T Consensus 8 ~~~dVvIIGaG~aGl~aA~~L~~--~g~~v~iiE~~~~~GGtw~~~~yPg~~~d~~~~~y~~~f~~~~~~~~~~~~~~~~ 85 (545)
T 3uox_A 8 PALDAVVIGAGVTGIYQAFLINQ--AGMKVLGIEAGEDVGGTWYWNRYPGCRLDTESYAYGYFALKGIIPEWEWSENFAS 85 (545)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTHHHHCCCTTCBCSSCHHHHCHHHHTTSSTTCCCSBSSCB
T ss_pred CCCCEEEECccHHHHHHHHHHHh--CCCCEEEEeCCCCCCCccccCCCCceeecCchhhcccccCcccccCCCccccCCC
Confidence 45799999999999999999999 8999999999999999985443331 123
Q ss_pred hhHHHHHHHHhhcCCCc--EEEceEEEEE----------Eeeeccc-ccccCEEEEeeC--CCCCCCCCCCCCCC-C-Ce
Q psy4525 65 VKNVINTFTKTGDNPRV--NFYGNICLGQ----------DISLGDL-TNAYHAVVLTYG--ADNDKKLNIPGEDG-K-NI 127 (388)
Q Consensus 65 ~~~~~~~~~~~~~~~~i--~~~~~~~v~~----------~~~~~~~-~~~yd~lvlAtG--~~~~~~~~i~g~~~-~-~v 127 (388)
..++..++.+.++++++ ++++++.|.. .+++.++ ...||+||+||| +.+ +.|++||.+. . .+
T Consensus 86 ~~ei~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~lV~AtG~~s~p-~~p~ipG~~~f~g~~ 164 (545)
T 3uox_A 86 QPEMLRYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTLDNEEVVTCRFLISATGPLSAS-RMPDIKGIDSFKGES 164 (545)
T ss_dssp HHHHHHHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEETTTEEEEEEEEEECCCSCBC----CCCTTGGGCCSEE
T ss_pred HHHHHHHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEECCCCEEEeCEEEECcCCCCCC-cCCCCCCccccCCCe
Confidence 45677777777776665 5666655432 2333333 247999999999 555 5788998652 2 24
Q ss_pred eecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 128 ISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
++...+...+...+. .....+|+|+|||+|.+|+|+|..|+ ..+.+||++.|++.
T Consensus 165 ~h~~~~~~~~~~~~~----~~~~~~krV~VIG~G~tgve~a~~la---------------------~~~~~Vtv~~r~~~ 219 (545)
T 3uox_A 165 FHSSRWPTDAEGAPK----GVDFTGKRVGVIGTGATGVQIIPIAA---------------------ETAKELYVFQRTPN 219 (545)
T ss_dssp EEGGGCCBCTTSCBS----CCCCBTCEEEEECCSHHHHHHHHHHT---------------------TTBSEEEEEESSCC
T ss_pred EEccccccccccccc----ccccCCCeEEEECCCccHHHHHHHHH---------------------hhCCEEEEEEcCCC
Confidence 444443321111000 13446899999999999999999887 33568999999998
Q ss_pred cccc
Q psy4525 208 LQVA 211 (388)
Q Consensus 208 ~~~~ 211 (388)
+..+
T Consensus 220 ~i~p 223 (545)
T 3uox_A 220 WCTP 223 (545)
T ss_dssp CCEE
T ss_pred cccc
Confidence 7554
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-24 Score=214.41 Aligned_cols=242 Identities=10% Similarity=0.105 Sum_probs=161.4
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCC-------------------------cchhH
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDH-------------------------PEVKN 67 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~-------------------------~~~~~ 67 (388)
+||+||||||||+++|..|++ .|.+|+|||+++.+||.| ++++.|.. ....+
T Consensus 2 ~dvvIIG~G~aGl~aA~~l~~--~g~~V~lie~~~~~GG~~~~~g~~p~k~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 79 (455)
T 2yqu_A 2 YDLLVIGAGPGGYVAAIRAAQ--LGMKVGVVEKEKALGGTCLRVGCIPSKALLETTERIYEAKKGLLGAKVKGVELDLPA 79 (455)
T ss_dssp EEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHCCTTEEECCEEECHHH
T ss_pred CCEEEECCChhHHHHHHHHHH--CCCeEEEEeCCCCCCCccceecchhHHHHHHHHHHHHHHhhhcCCcccCCCccCHHH
Confidence 689999999999999999999 899999999998899886 33433321 01111
Q ss_pred H-----------HHHHHHhhcCCCcEEEceEEEEE---Eeeec--ccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecc
Q psy4525 68 V-----------INTFTKTGDNPRVNFYGNICLGQ---DISLG--DLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISAR 131 (388)
Q Consensus 68 ~-----------~~~~~~~~~~~~i~~~~~~~v~~---~~~~~--~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~ 131 (388)
+ ...+.+.+++.+++++.++.+.. .+.+. +....||+||+|||+.+ +.++++|.+..++++..
T Consensus 80 ~~~~~~~~~~~l~~~~~~~~~~~~v~~~~g~~~~i~~~~~~v~~~g~~~~~d~lviAtG~~p-~~~~~~g~~~~~v~~~~ 158 (455)
T 2yqu_A 80 LMAHKDKVVQANTQGVEFLFKKNGIARHQGTARFLSERKVLVEETGEELEARYILIATGSAP-LIPPWAQVDYERVVTST 158 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTCCEEEEEEEEECCCEEE-CCCTTBCCCSSSEECHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEecCCeEEEeeCCEEEEecEEEECCCCCC-CCCCCCCCCcCcEechH
Confidence 1 11223455566888887655421 12222 22348999999999987 47778886655677665
Q ss_pred cccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCccccc
Q psy4525 132 SFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVA 211 (388)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~ 211 (388)
++.. ....+++++|||+|.+|+|+|..|. +.+ .+|+++.+.+.+...
T Consensus 159 ~~~~------------~~~~~~~vvIiGgG~~g~e~A~~l~--------------------~~g-~~V~lv~~~~~~l~~ 205 (455)
T 2yqu_A 159 EALS------------FPEVPKRLIVVGGGVIGLELGVVWH--------------------RLG-AEVIVLEYMDRILPT 205 (455)
T ss_dssp HHTC------------CSSCCSEEEEECCSHHHHHHHHHHH--------------------HTT-CEEEEECSSSSSCTT
T ss_pred Hhhc------------cccCCCeEEEECCCHHHHHHHHHHH--------------------HcC-CEEEEEecCCccccc
Confidence 5541 1123689999999999999999775 233 479999998765332
Q ss_pred CCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCc
Q psy4525 212 FTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGA 291 (388)
Q Consensus 212 ~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~ 291 (388)
+. +++. +.+.+.+. +.||++++++.++++..++ +.
T Consensus 206 ~~-~~~~-------------------------------~~l~~~l~------------~~Gv~i~~~~~V~~i~~~~-~~ 240 (455)
T 2yqu_A 206 MD-LEVS-------------------------------RAAERVFK------------KQGLTIRTGVRVTAVVPEA-KG 240 (455)
T ss_dssp SC-HHHH-------------------------------HHHHHHHH------------HHTCEEECSCCEEEEEEET-TE
T ss_pred cC-HHHH-------------------------------HHHHHHHH------------HCCCEEEECCEEEEEEEeC-CE
Confidence 11 1111 12222222 5789999999999998643 22
Q ss_pred eeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 292 ITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 292 v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
..+++ .+++++++|.||+|+|++|+... .++.+++++.+.+|+..
T Consensus 241 -v~v~~--------~~g~~i~~D~vv~A~G~~p~~~~l~~~~~g~~~~~~g~i~vd~~~ 290 (455)
T 2yqu_A 241 -ARVEL--------EGGEVLEADRVLVAVGRRPYTEGLSLENAGLSTDERGRIPVDEHL 290 (455)
T ss_dssp -EEEEE--------TTSCEEEESEEEECSCEEECCTTCCGGGGTCCCCTTSCCCCCTTS
T ss_pred -EEEEE--------CCCeEEEcCEEEECcCCCcCCCCCChhhcCCccCCCCcEeECCCc
Confidence 23332 24568999999999999998732 34555544447777653
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-24 Score=214.64 Aligned_cols=253 Identities=14% Similarity=0.147 Sum_probs=155.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCC-----cchhH-------HHHHHHHhhcCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDH-----PEVKN-------VINTFTKTGDNPR 80 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~-----~~~~~-------~~~~~~~~~~~~~ 80 (388)
+++|+|||||+||+++|..|++..++.+|+|||+++.++ ..+.+. |.+ ....+ +..+...+.++.+
T Consensus 3 ~~~VvIIGaG~aGl~aA~~L~~~~~g~~Vtvie~~~~~~-~~~~gl-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g 80 (472)
T 3iwa_A 3 LKHVVVIGAVALGPKAACRFKRLDPEAHVTMIDQASRIS-YGGCGI-PYYVSGEVSNIESLQATPYNVVRDPEFFRINKD 80 (472)
T ss_dssp -CEEEEECCSSHHHHHHHHHHHHCTTSEEEEECCC---------------------------------------------
T ss_pred CCcEEEECCCHHHHHHHHHHHhhCcCCCEEEEECCCccc-cccccc-chhhcCCCCchHHhccccchhccCHHHHhhhcC
Confidence 469999999999999999999955599999999998754 111122 211 11112 2233333444578
Q ss_pred cEEEceEEEEE------Eeeecc---c---ccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCc
Q psy4525 81 VNFYGNICLGQ------DISLGD---L---TNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDL 148 (388)
Q Consensus 81 i~~~~~~~v~~------~~~~~~---~---~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~ 148 (388)
++++.++.+.. .+.+.. . ...||+||+|||+.+ +.+++||.+.+++++...+..... ......
T Consensus 81 i~~~~~~~V~~id~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p-~~p~i~G~~~~~v~~~~~~~~~~~----l~~~l~ 155 (472)
T 3iwa_A 81 VEALVETRAHAIDRAAHTVEIENLRTGERRTLKYDKLVLALGSKA-NRPPVEGMDLAGVTPVTNLDEAEF----VQHAIS 155 (472)
T ss_dssp CEEECSEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEE-CCCSCTTTTSBTEEECCSHHHHHH----HHHHCC
T ss_pred cEEEECCEEEEEECCCCEEEEeecCCCCEEEEECCEEEEeCCCCc-CCCCCCCCCCCCEEEeCCHHHHHH----HHHHhh
Confidence 99888776632 133222 2 237999999999987 578899988778876655432110 000001
Q ss_pred CCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceE
Q psy4525 149 SLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQT 228 (388)
Q Consensus 149 ~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~ 228 (388)
...+++++|||+|.+|+|+|..|. +....+|+++.|.+.+.....++++.
T Consensus 156 ~~~~~~vvViGgG~~g~e~A~~l~--------------------~~~g~~Vtlv~~~~~~l~~~~~~~~~---------- 205 (472)
T 3iwa_A 156 AGEVSKAVIVGGGFIGLEMAVSLA--------------------DMWGIDTTVVELADQIMPGFTSKSLS---------- 205 (472)
T ss_dssp TTSCSEEEEECCSHHHHHHHHHHH--------------------HHHCCEEEEECSSSSSSTTTSCHHHH----------
T ss_pred cCCCCEEEEECCCHHHHHHHHHHH--------------------HhcCCcEEEEEccCcccccccCHHHH----------
Confidence 124789999999999999999776 12025799999988765422222221
Q ss_pred EecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCce
Q psy4525 229 VFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDT 308 (388)
Q Consensus 229 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~ 308 (388)
+.+.+.+. +.||++++++.++++..+ ++.+. +.+ .++
T Consensus 206 ---------------------~~l~~~l~------------~~GV~i~~~~~v~~i~~~-~~~v~-v~~--------~~g 242 (472)
T 3iwa_A 206 ---------------------QMLRHDLE------------KNDVVVHTGEKVVRLEGE-NGKVA-RVI--------TDK 242 (472)
T ss_dssp ---------------------HHHHHHHH------------HTTCEEECSCCEEEEEES-SSBEE-EEE--------ESS
T ss_pred ---------------------HHHHHHHH------------hcCCEEEeCCEEEEEEcc-CCeEE-EEE--------eCC
Confidence 12222222 579999999999999863 34443 433 334
Q ss_pred eEEecceEEEccccCCccC---CCCCcccCCCccccCCCC
Q psy4525 309 ELIPSGIAFRSIGYQSRCV---DSDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 309 ~~l~~D~Vi~a~G~~p~~~---~~~l~~~~~~gi~l~~~~ 345 (388)
++++||.||+|+|++|++. ..++++++++++.+|+..
T Consensus 243 ~~i~aD~Vv~a~G~~p~~~l~~~~gl~~~~~g~i~vd~~~ 282 (472)
T 3iwa_A 243 RTLDADLVILAAGVSPNTQLARDAGLELDPRGAIIVDTRM 282 (472)
T ss_dssp CEEECSEEEECSCEEECCHHHHHHTCCBCTTCCEECCTTC
T ss_pred CEEEcCEEEECCCCCcCHHHHHhCCccCCCCCCEEECCCc
Confidence 5899999999999999863 146777777778887654
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.1e-24 Score=209.99 Aligned_cols=241 Identities=13% Similarity=0.145 Sum_probs=160.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee-eCCC------------------CCC-------c--
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR-YGVA------------------PDH-------P-- 63 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~-~g~~------------------p~~-------~-- 63 (388)
..++|+||||||+|+++|..|++ .|.+|+|||++ .+||.|. .|+. |.+ .
T Consensus 3 ~~~dvvIIGgG~aGl~aA~~l~~--~g~~V~lie~~-~~GG~~~~~g~ip~k~l~~~~~~~~~~~~~~~~~g~~~~~~~~ 79 (467)
T 1zk7_A 3 PPVQVAVIGSGGAAMAAALKAVE--QGAQVTLIERG-TIGGTCVNVGCVPSKIMIRAAHIAHLRRESPFDGGIAATVPTI 79 (467)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESS-STTHHHHHHSHHHHHHHHHHHHHHHHHHCCTTTTTSCCCCCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHH--CCCEEEEEeCC-CCCccccCCCccchHHHHHHHHHHHHHhhhhhcCCccCCCCcc
Confidence 35799999999999999999999 89999999998 6787752 2211 111 0
Q ss_pred chhHHH-------HH-----HHHhhcCC-CcEEEceEEEEE-----Eeeeccc---ccccCEEEEeeCCCCCCCCCCCCC
Q psy4525 64 EVKNVI-------NT-----FTKTGDNP-RVNFYGNICLGQ-----DISLGDL---TNAYHAVVLTYGADNDKKLNIPGE 122 (388)
Q Consensus 64 ~~~~~~-------~~-----~~~~~~~~-~i~~~~~~~v~~-----~~~~~~~---~~~yd~lvlAtG~~~~~~~~i~g~ 122 (388)
....+. .. +.+.+++. +++++.+..... .+...+. ...||+||+|||+.+ +.|++||.
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~v~~~~g~~~~~~~d~lviAtGs~p-~~p~i~G~ 158 (467)
T 1zk7_A 80 DRSKLLAQQQARVDELRHAKYEGILGGNPAITVVHGEARFKDDQSLTVRLNEGGERVVMFDRCLVATGASP-AVPPIPGL 158 (467)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTHHHHTTCTTEEEEEEEEEEEETTEEEEEETTSSEEEEECSEEEECCCEEE-CCCCCTTT
T ss_pred CHHHHHHHHHHHHHHHhhhhHHHHHhccCCeEEEEEEEEEccCCEEEEEeCCCceEEEEeCEEEEeCCCCC-CCCCCCCC
Confidence 111211 11 23455666 899887653221 1333333 347999999999987 57789987
Q ss_pred CCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEE
Q psy4525 123 DGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLV 202 (388)
Q Consensus 123 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i 202 (388)
+..++++..++... ...+++++|||+|++|+|+|..|. +.+ .+|+++
T Consensus 159 ~~~~~~~~~~~~~~------------~~~~~~vvViGgG~~g~E~A~~l~--------------------~~g-~~Vtlv 205 (467)
T 1zk7_A 159 KESPYWTSTEALAS------------DTIPERLAVIGSSVVALELAQAFA--------------------RLG-SKVTVL 205 (467)
T ss_dssp TTSCCBCHHHHHHC------------SSCCSEEEEECCSHHHHHHHHHHH--------------------HTT-CEEEEE
T ss_pred CcCceecHHHHhcc------------cccCCEEEEECCCHHHHHHHHHHH--------------------HcC-CEEEEE
Confidence 65556655554421 123789999999999999999876 233 479999
Q ss_pred eecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcce
Q psy4525 203 GRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPT 282 (388)
Q Consensus 203 ~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~ 282 (388)
+|.+.+.. +. +++. +.+.+.+. +.||++++++.++
T Consensus 206 ~~~~~~l~-~~-~~~~-------------------------------~~l~~~l~------------~~Gv~i~~~~~v~ 240 (467)
T 1zk7_A 206 ARNTLFFR-ED-PAIG-------------------------------EAVTAAFR------------AEGIEVLEHTQAS 240 (467)
T ss_dssp CSSCTTTT-SC-HHHH-------------------------------HHHHHHHH------------HTTCEEETTCCEE
T ss_pred EECCccCC-CC-HHHH-------------------------------HHHHHHHH------------hCCCEEEcCCEEE
Confidence 99876543 22 2221 12222222 5799999999999
Q ss_pred eeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 283 EFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 283 ~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
++..++ ....+.+ + +.+++||.||+|+|++|+... .++++++++.+.+|+..
T Consensus 241 ~i~~~~--~~~~v~~--------~-~~~i~aD~Vv~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd~~~ 297 (467)
T 1zk7_A 241 QVAHMD--GEFVLTT--------T-HGELRADKLLVATGRTPNTRSLALDAAGVTVNAQGAIVIDQGM 297 (467)
T ss_dssp EEEEET--TEEEEEE--------T-TEEEEESEEEECSCEEESCTTSCGGGGTCCBCTTSCBCCCTTC
T ss_pred EEEEeC--CEEEEEE--------C-CcEEEcCEEEECCCCCcCCCcCCchhcCCcCCCCCCEEECCCc
Confidence 998532 2333432 2 247999999999999999631 34556554447777643
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-24 Score=212.78 Aligned_cols=246 Identities=12% Similarity=0.154 Sum_probs=160.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCC-------------------------cchh
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDH-------------------------PEVK 66 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~-------------------------~~~~ 66 (388)
.++|+||||||||+++|..|++ .|.+|+|||+++ +||.| +.++.|.. ....
T Consensus 6 ~~dvvIIG~G~aG~~aA~~l~~--~g~~V~lie~~~-~GG~~~~~g~iP~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (464)
T 2eq6_A 6 TYDLIVIGTGPGGYHAAIRAAQ--LGLKVLAVEAGE-VGGVCLNVGCIPTKALLHAAETLHHLKVAEGFGLKAKPELDLK 82 (464)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSC-TTHHHHHTSHHHHHHHHHHHHHHHHHHHHGGGTEECCCEECHH
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCC-CCCCCCCcChHHHHHHHHHHHHHHHHHhHHhcCCCCCCCcCHH
Confidence 4799999999999999999999 899999999987 78876 33433321 0111
Q ss_pred HHHH-----------HHHHhhcCCCcEEEceEEEEE---EeeecccccccCEEEEeeCCCCCCCCC-CCCCCCCCeeecc
Q psy4525 67 NVIN-----------TFTKTGDNPRVNFYGNICLGQ---DISLGDLTNAYHAVVLTYGADNDKKLN-IPGEDGKNIISAR 131 (388)
Q Consensus 67 ~~~~-----------~~~~~~~~~~i~~~~~~~v~~---~~~~~~~~~~yd~lvlAtG~~~~~~~~-i~g~~~~~v~~~~ 131 (388)
.+.. .+...+++.+++++.++.+.. .+.+.+....||+||+|||+.+. .|+ +++. .++++..
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~g~~~~~d~lViATGs~p~-~p~gi~~~--~~v~~~~ 159 (464)
T 2eq6_A 83 KLGGWRDQVVKKLTGGVGTLLKGNGVELLRGFARLVGPKEVEVGGERYGAKSLILATGSEPL-ELKGFPFG--EDVWDST 159 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTEEEEEEEEEECCCEEEC-CBTTBCCS--SSEECHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEccCCEEEEccEEEEeCEEEEcCCCCCC-CCCCCCCC--CcEEcHH
Confidence 1111 123445667899887765432 23343223489999999999874 443 6662 2566555
Q ss_pred cccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCccccc
Q psy4525 132 SFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVA 211 (388)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~ 211 (388)
++... . ...+++++|||+|.+|+|+|..|. +.+ .+|+++++.+.+...
T Consensus 160 ~~~~l----------~-~~~~~~vvViGgG~~g~e~A~~l~--------------------~~g-~~Vtlv~~~~~~l~~ 207 (464)
T 2eq6_A 160 RALKV----------E-EGLPKRLLVIGGGAVGLELGQVYR--------------------RLG-AEVTLIEYMPEILPQ 207 (464)
T ss_dssp HHTCG----------G-GCCCSEEEEECCSHHHHHHHHHHH--------------------HTT-CEEEEECSSSSSSTT
T ss_pred HHHhh----------h-hhcCCEEEEECCCHHHHHHHHHHH--------------------HCC-CeEEEEEcCCccccc
Confidence 54421 0 113689999999999999999776 234 479999998765432
Q ss_pred CCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCc
Q psy4525 212 FTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGA 291 (388)
Q Consensus 212 ~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~ 291 (388)
+. +++. +.+.+.+. +.||++++++.++++..++ +.
T Consensus 208 ~~-~~~~-------------------------------~~l~~~l~------------~~gV~i~~~~~v~~i~~~~-~~ 242 (464)
T 2eq6_A 208 GD-PETA-------------------------------ALLRRALE------------KEGIRVRTKTKAVGYEKKK-DG 242 (464)
T ss_dssp SC-HHHH-------------------------------HHHHHHHH------------HTTCEEECSEEEEEEEEET-TE
T ss_pred cC-HHHH-------------------------------HHHHHHHH------------hcCCEEEcCCEEEEEEEeC-CE
Confidence 21 1211 12222222 5799999999999998643 22
Q ss_pred eeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 292 ITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 292 v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
..+.+.+. .+++.++++||.||+|+|++||+.. .++.+++++.+.+|+..
T Consensus 243 -~~v~~~~~---~~g~~~~i~~D~vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~ 297 (464)
T 2eq6_A 243 -LHVRLEPA---EGGEGEEVVVDKVLVAVGRKPRTEGLGLEKAGVKVDERGFIRVNARM 297 (464)
T ss_dssp -EEEEEEET---TCCSCEEEEESEEEECSCEEESCTTSSHHHHTCCBCTTSCBCCCTTC
T ss_pred -EEEEEeec---CCCceeEEEcCEEEECCCcccCCCCCChhhcCceecCCCCEEECCCc
Confidence 23443210 0122348999999999999999742 34566555558887654
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=8.1e-24 Score=208.74 Aligned_cols=209 Identities=14% Similarity=0.149 Sum_probs=144.6
Q ss_pred CcEEEECccHHHHHHHHHHHhhC-CCCc---EEEEcCCCCCCCceeeC----CC--------------------------
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLL-PQST---VDIYEKLPVPFGLVRYG----VA-------------------------- 59 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~-~g~~---v~lie~~~~~gg~~~~g----~~-------------------------- 59 (388)
++|+||||||||+++|..|++.. .|.+ |+|||+.+.+||.|.+. +.
T Consensus 3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~~~~~g~~~~g~~~~~~~y~~l~~~~~~~~~~~~ 82 (464)
T 2xve_A 3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNYTWRTGLDENGEPVHSSMYRYLWSNGPKECLEFA 82 (464)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSCCSCCSBCTTSSBCCCCCCTTCBCSSCGGGTCBT
T ss_pred CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeecCCCCCccccCCCCcCccccchhhcCChhhcccC
Confidence 69999999999999999998732 4788 99999999999998652 10
Q ss_pred ------------CCCcchhHHHHHHHHhhcCCCcE--EEceEEEEE----------Eeeecc------cccccCEEEEee
Q psy4525 60 ------------PDHPEVKNVINTFTKTGDNPRVN--FYGNICLGQ----------DISLGD------LTNAYHAVVLTY 109 (388)
Q Consensus 60 ------------p~~~~~~~~~~~~~~~~~~~~i~--~~~~~~v~~----------~~~~~~------~~~~yd~lvlAt 109 (388)
+.+....++.+++.++++++++. +++++.|.. .+++.+ ....||+||+||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~d~VVvAt 162 (464)
T 2xve_A 83 DYTFDEHFGKPIASYPPREVLWDYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEFDYVVCCT 162 (464)
T ss_dssp TBCHHHHHSSCCCSSCBHHHHHHHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEESEEEECC
T ss_pred CCCCCcccCCCCCCCCCHHHHHHHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEcCEEEECC
Confidence 11123456677777777777776 776665521 233322 224799999999
Q ss_pred C--CCCCCCCCCCCCCC-C-CeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCch
Q psy4525 110 G--ADNDKKLNIPGEDG-K-NIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITE 185 (388)
Q Consensus 110 G--~~~~~~~~i~g~~~-~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~ 185 (388)
| +.+ +.|++||.+. + .++++.++.. ...+.+++|+|||+|++|+|+|..|+
T Consensus 163 G~~s~p-~~p~ipG~~~~~g~~~hs~~~~~-----------~~~~~~k~VvVVG~G~sg~eiA~~l~------------- 217 (464)
T 2xve_A 163 GHFSTP-YVPEFEGFEKFGGRILHAHDFRD-----------ALEFKDKTVLLVGSSYSAEDIGSQCY------------- 217 (464)
T ss_dssp CSSSSB-CCCCCBTTTTCCSEEEEGGGCCC-----------GGGGTTSEEEEECCSTTHHHHHHHHH-------------
T ss_pred CCCCCC-ccCCCCCcccCCceEEehhhhCC-----------HhHcCCCEEEEEcCCCCHHHHHHHHH-------------
Confidence 9 555 5778888753 3 3555555431 12245899999999999999999886
Q ss_pred hHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCC
Q psy4525 186 HSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDES 265 (388)
Q Consensus 186 ~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 265 (388)
+. +++|+++.|++.....
T Consensus 218 -------~~-g~~V~li~~~~~~~~~------------------------------------------------------ 235 (464)
T 2xve_A 218 -------KY-GAKKLISCYRTAPMGY------------------------------------------------------ 235 (464)
T ss_dssp -------HT-TCSEEEEECSSCCCCC------------------------------------------------------
T ss_pred -------Hh-CCeEEEEEECCCCCCC------------------------------------------------------
Confidence 22 3579999988653110
Q ss_pred CCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccC
Q psy4525 266 KSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCV 327 (388)
Q Consensus 266 ~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~ 327 (388)
....+|.++ ..++++.. + ++.+ .+|+++++|.||+|||++|+..
T Consensus 236 --~~~~~V~~~--~~V~~i~~---~---~V~~--------~dG~~i~~D~Vi~atG~~p~~~ 279 (464)
T 2xve_A 236 --KWPENWDER--PNLVRVDT---E---NAYF--------ADGSSEKVDAIILCTGYIHHFP 279 (464)
T ss_dssp --CCCTTEEEC--SCEEEECS---S---EEEE--------TTSCEEECSEEEECCCBCCCCT
T ss_pred --CCCCceEEc--CCeEEEeC---C---EEEE--------CCCCEEeCCEEEECCCCCCCCC
Confidence 002466665 56677752 2 2444 3445799999999999999863
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.5e-25 Score=220.40 Aligned_cols=240 Identities=14% Similarity=0.151 Sum_probs=153.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC--------CCCCce-eeCCCCCCcc-------------------
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP--------VPFGLV-RYGVAPDHPE------------------- 64 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~--------~~gg~~-~~g~~p~~~~------------------- 64 (388)
.+||+|||+||||+.||..+++ .|.+|+|||+.. .+||.| ++||.|....
T Consensus 42 dYDviVIG~GpaG~~aA~~aa~--~G~kValIE~~~~~~~~~k~~lGGtCln~GCIPsK~L~~aa~~~~~~~~~~~~~Gi 119 (542)
T 4b1b_A 42 DYDYVVIGGGPGGMASAKEAAA--HGARVLLFDYVKPSSQGTKWGIGGTCVNVGCVPKKLMHYAGHMGSIFKLDSKAYGW 119 (542)
T ss_dssp SEEEEEECCSHHHHHHHHHHHT--TTCCEEEECCCCCCTTCCCCCSSHHHHHHSHHHHHHHHHHHHHHHHHHHTGGGGTE
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccccccccccCCCCCcccccchHHHHHHHHHHHHHHHHHhhhHhcCc
Confidence 4799999999999999999999 899999999643 478876 6677663210
Q ss_pred --------hhHH-----------HHHHHHhhcCCCcEEEceEEEEE---Eee--ec----c-cccccCEEEEeeCCCCCC
Q psy4525 65 --------VKNV-----------INTFTKTGDNPRVNFYGNICLGQ---DIS--LG----D-LTNAYHAVVLTYGADNDK 115 (388)
Q Consensus 65 --------~~~~-----------~~~~~~~~~~~~i~~~~~~~v~~---~~~--~~----~-~~~~yd~lvlAtG~~~~~ 115 (388)
...+ ...+...+++.+++++.+...-. .+. .. . ....++++|||||+.|.
T Consensus 120 ~~~~~~~d~~~~~~~~~~~v~~l~~~~~~~l~~~~V~~i~G~a~f~~~~~v~V~~~~~~~~~~~i~a~~iiIATGs~P~- 198 (542)
T 4b1b_A 120 KFDNLKHDWKKLVTTVQSHIRSLNFSYMTGLRSSKVKYINGLAKLKDKNTVSYYLKGDLSKEETVTGKYILIATGCRPH- 198 (542)
T ss_dssp EEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECEEEEEEETTEEEEEEC--CCCEEEEEEEEEEECCCEEEC-
T ss_pred ccCcccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeeEEEcCCCcceEeecccCCceEEEeeeeEEeccCCCCC-
Confidence 1111 11223345566787765443211 121 11 1 12378999999999984
Q ss_pred CCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCC
Q psy4525 116 KLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSR 195 (388)
Q Consensus 116 ~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~ 195 (388)
.|+.++.+...++++.+++. ....+++++|||||++|+|+|..++ +.|
T Consensus 199 ~P~~~~~~~~~~~ts~~~l~------------l~~lP~~lvIIGgG~IGlE~A~~~~--------------------~lG 246 (542)
T 4b1b_A 199 IPDDVEGAKELSITSDDIFS------------LKKDPGKTLVVGASYVALECSGFLN--------------------SLG 246 (542)
T ss_dssp CCSSSBTHHHHCBCHHHHTT------------CSSCCCSEEEECCSHHHHHHHHHHH--------------------HHT
T ss_pred CCCcccCCCccccCchhhhc------------cccCCceEEEECCCHHHHHHHHHHH--------------------hcC
Confidence 55443333334555555552 2233689999999999999999876 233
Q ss_pred CcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEE
Q psy4525 196 IKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRP 275 (388)
Q Consensus 196 ~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 275 (388)
.+||++.|.. ....+ ++++. +.+.+.|. ++||.+
T Consensus 247 -~~VTii~~~~-~L~~~-D~ei~-------------------------------~~l~~~l~------------~~gi~~ 280 (542)
T 4b1b_A 247 -YDVTVAVRSI-VLRGF-DQQCA-------------------------------VKVKLYME------------EQGVMF 280 (542)
T ss_dssp -CCEEEEESSC-SSTTS-CHHHH-------------------------------HHHHHHHH------------HTTCEE
T ss_pred -CeEEEecccc-ccccc-chhHH-------------------------------HHHHHHHH------------hhccee
Confidence 4699998753 33332 22222 12222222 689999
Q ss_pred EecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCC
Q psy4525 276 IFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPK 343 (388)
Q Consensus 276 ~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~ 343 (388)
+++..+.++...+ +. ..+.+ .++.++.+|.|++|+|++||+.. .++.++..+++++++
T Consensus 281 ~~~~~v~~~~~~~-~~-~~v~~--------~~~~~~~~D~vLvAvGR~Pnt~~L~le~~gv~~~~~~~~i~vd 343 (542)
T 4b1b_A 281 KNGILPKKLTKMD-DK-ILVEF--------SDKTSELYDTVLYAIGRKGDIDGLNLESLNMNVNKSNNKIIAD 343 (542)
T ss_dssp EETCCEEEEEEET-TE-EEEEE--------TTSCEEEESEEEECSCEEESCGGGCGGGTTCCEETTTTEECCC
T ss_pred ecceEEEEEEecC-Ce-EEEEE--------cCCCeEEEEEEEEcccccCCccccCcccceeeecccCceEecc
Confidence 9999999998643 22 23332 34457889999999999999842 345666656654433
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-24 Score=212.33 Aligned_cols=250 Identities=16% Similarity=0.176 Sum_probs=161.0
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCC--cEEEEcCCCCCC-Cce--eeCCCCCCcchhHHHHHHHHhhcCCCcEEEceE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQS--TVDIYEKLPVPF-GLV--RYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNI 87 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~--~v~lie~~~~~g-g~~--~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~ 87 (388)
.++|+|||||+||+++|..|++ .|. +|++||+++... ... ...........+++.....+++++.+++++.++
T Consensus 4 ~~~vvIIGgG~aGl~aA~~l~~--~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~ 81 (431)
T 1q1r_A 4 NDNVVIVGTGLAGVEVAFGLRA--SGWEGNIRLVGDATVIPHHLPPLSKAYLAGKATAESLYLRTPDAYAAQNIQLLGGT 81 (431)
T ss_dssp SCEEEEECCSHHHHHHHHHHHH--TTCCSEEEEECSCCSCCBCSGGGGTTTTTTCSCSGGGBSSCHHHHHHTTEEEECSC
T ss_pred CCcEEEEcCHHHHHHHHHHHHc--cCcCCCEEEEECCCCCCCcCCCCcHHHhCCCCChHHhcccCHHHHHhCCCEEEeCC
Confidence 4799999999999999999999 676 799999986542 110 011101111111111111233455789988876
Q ss_pred EEE-E-----Eeeeccc-ccccCEEEEeeCCCCCCCCCCCCCCCCC---eeecccccccccCCCCccccCcCCCCCeEEE
Q psy4525 88 CLG-Q-----DISLGDL-TNAYHAVVLTYGADNDKKLNIPGEDGKN---IISARSFVGWYNGLPEDASLDLSLDCEEATI 157 (388)
Q Consensus 88 ~v~-~-----~~~~~~~-~~~yd~lvlAtG~~~~~~~~i~g~~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvV 157 (388)
.+. . .+.+.+. ...||+||+|||+.+ +.+++||.+.++ +++..+...... .. .....+++|+|
T Consensus 82 ~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~p-~~~~i~G~~~~~~~~v~~~~~~~d~~~----l~--~~l~~~~~vvV 154 (431)
T 1q1r_A 82 QVTAINRDRQQVILSDGRALDYDRLVLATGGRP-RPLPVASGAVGKANNFRYLRTLEDAEC----IR--RQLIADNRLVV 154 (431)
T ss_dssp CEEEEETTTTEEEETTSCEEECSEEEECCCEEE-CCCGGGTTHHHHSTTEEESSSHHHHHH----HH--HTCCTTCEEEE
T ss_pred EEEEEECCCCEEEECCCCEEECCEEEEcCCCCc-cCCCCCCcccCCCceEEEECCHHHHHH----HH--HHhhcCCeEEE
Confidence 542 1 2444444 348999999999987 577888876545 665443321100 00 11224789999
Q ss_pred EcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEeccccccc
Q psy4525 158 LGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCG 237 (388)
Q Consensus 158 IGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~ 237 (388)
||+|++|+|+|..|. +.+ .+|+++.+.+.+.....++++.
T Consensus 155 iGgG~~g~E~A~~l~--------------------~~G-~~Vtlv~~~~~~l~~~~~~~~~------------------- 194 (431)
T 1q1r_A 155 IGGGYIGLEVAATAI--------------------KAN-MHVTLLDTAARVLERVTAPPVS------------------- 194 (431)
T ss_dssp ECCSHHHHHHHHHHH--------------------HTT-CEEEEECSSSSTTTTTSCHHHH-------------------
T ss_pred ECCCHHHHHHHHHHH--------------------hCC-CEEEEEEeCCccccchhhHHHH-------------------
Confidence 999999999999876 233 4799999987654432222221
Q ss_pred chhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeC-CCCceeEEEEccCccccCCceeEEecceE
Q psy4525 238 VHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLN-DNGAITGINFANQQALVTEDTELIPSGIA 316 (388)
Q Consensus 238 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~-~~~~v~~v~~~~~~~~~~~~~~~l~~D~V 316 (388)
+.+.+.+. +.||++++++.++++..+ .++.+..+.+ .++++++||.|
T Consensus 195 ------------~~l~~~l~------------~~GV~i~~~~~v~~i~~~~~~~~v~~v~~--------~~G~~i~~D~V 242 (431)
T 1q1r_A 195 ------------AFYEHLHR------------EAGVDIRTGTQVCGFEMSTDQQKVTAVLC--------EDGTRLPADLV 242 (431)
T ss_dssp ------------HHHHHHHH------------HHTCEEECSCCEEEEEECTTTCCEEEEEE--------TTSCEEECSEE
T ss_pred ------------HHHHHHHH------------hCCeEEEeCCEEEEEEeccCCCcEEEEEe--------CCCCEEEcCEE
Confidence 11222222 579999999999999862 2356666654 34468999999
Q ss_pred EEccccCCccC---CCCCcccCCCccccCCCC
Q psy4525 317 FRSIGYQSRCV---DSDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 317 i~a~G~~p~~~---~~~l~~~~~~gi~l~~~~ 345 (388)
|+|+|++|+.. ..+++++ +|+.+|+..
T Consensus 243 v~a~G~~p~~~l~~~~gl~~~--~gi~Vd~~~ 272 (431)
T 1q1r_A 243 IAGIGLIPNCELASAAGLQVD--NGIVINEHM 272 (431)
T ss_dssp EECCCEEECCHHHHHTTCCBS--SSEECCTTS
T ss_pred EECCCCCcCcchhhccCCCCC--CCEEECCCc
Confidence 99999999863 1456664 578887654
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.2e-25 Score=221.13 Aligned_cols=167 Identities=13% Similarity=0.223 Sum_probs=120.7
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCC---------------------------Ccch
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPD---------------------------HPEV 65 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~---------------------------~~~~ 65 (388)
.++|+|||||+||+++|..|++ .|.+|+|||+.+.+||.|.....|. +...
T Consensus 21 ~~dVvIIGaG~aGl~aA~~L~~--~G~~v~iiE~~~~~GGtw~~~~ypg~~~dv~s~~y~~~f~~~~~~~~~~~~~~~~~ 98 (549)
T 4ap3_A 21 SYDVVVVGAGIAGLYAIHRFRS--QGLTVRAFEAASGVGGVWYWNRYPGARCDVESIDYSYSFSPELEQEWNWSEKYATQ 98 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCSSSSCBH
T ss_pred CCCEEEECchHHHHHHHHHHHh--CCCCEEEEeCCCCCCCccccCCCCCceeCCCchhcccccccccccCCCCccCCCCH
Confidence 4699999999999999999999 8999999999999999884221111 1234
Q ss_pred hHHHHHHHHhhcCCCc--EEEceEEEEE----------Eeeecccc-cccCEEEEeeC--CCCCCCCCCCCCC-CC-Cee
Q psy4525 66 KNVINTFTKTGDNPRV--NFYGNICLGQ----------DISLGDLT-NAYHAVVLTYG--ADNDKKLNIPGED-GK-NII 128 (388)
Q Consensus 66 ~~~~~~~~~~~~~~~i--~~~~~~~v~~----------~~~~~~~~-~~yd~lvlAtG--~~~~~~~~i~g~~-~~-~v~ 128 (388)
.++..++.+.++++++ ++++++.|.. .+++.++. ..||+||+||| +.+ +.|++||.+ .. .++
T Consensus 99 ~ei~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~~~G~~i~ad~lV~AtG~~s~p-~~p~ipG~~~f~g~~~ 177 (549)
T 4ap3_A 99 PEILAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRTDRGDEVSARFLVVAAGPLSNA-NTPAFDGLDRFTGDIV 177 (549)
T ss_dssp HHHHHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSEEEC-CCCCCTTGGGCCSEEE
T ss_pred HHHHHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEECCCCEEEeCEEEECcCCCCCC-CCCCCCCcccCCCceE
Confidence 5677777777777776 6776655532 23333333 47999999999 565 578899875 22 244
Q ss_pred ecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcc
Q psy4525 129 SARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGAL 208 (388)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~ 208 (388)
+...+.. + .....+|+|+|||+|.+|+|+|..|+ ..+.+||++.|++.+
T Consensus 178 ~~~~~~~------~----~~~~~~krV~VIG~G~sgve~a~~l~---------------------~~~~~Vtv~~r~~~~ 226 (549)
T 4ap3_A 178 HTARWPH------D----GVDFTGKRVGVIGTGSSGIQSIPIIA---------------------EQAEQLFVFQRSANY 226 (549)
T ss_dssp EGGGCCT------T----CCCCBTCEEEEECCSHHHHHHHHHHH---------------------HHBSEEEEEESSCCC
T ss_pred Eeccccc------c----ccccCCCEEEEECCCchHHHHHHHHH---------------------hhCCEEEEEECCCCc
Confidence 4443320 0 22346899999999999999999886 223689999999987
Q ss_pred cccCC
Q psy4525 209 QVAFT 213 (388)
Q Consensus 209 ~~~~~ 213 (388)
..+..
T Consensus 227 ilp~~ 231 (549)
T 4ap3_A 227 SIPAG 231 (549)
T ss_dssp EEECC
T ss_pred cccCc
Confidence 66543
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-24 Score=213.06 Aligned_cols=241 Identities=16% Similarity=0.193 Sum_probs=161.1
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCC--------------------------cc-
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDH--------------------------PE- 64 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~--------------------------~~- 64 (388)
.+||+||||||+|+++|..|++ .|.+|+|||+ +.+||.| +.|+.|.. ..
T Consensus 5 ~~DVvVIGaG~aGl~aA~~la~--~G~~V~liEk-~~~GG~~~~~gcip~k~l~~~~~~~~~~~~~~~~g~~~~~~~~~~ 81 (463)
T 4dna_A 5 DYDLFVIGGGSGGVRSGRLAAA--LGKKVAIAEE-FRYGGTCVIRGCVPKKLYVYASQFAEHFEDAAGFGWTVGESRFDW 81 (463)
T ss_dssp SEEEEEECCSHHHHHHHHHHHT--TTCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTEEECCCEECH
T ss_pred CCcEEEECcCHHHHHHHHHHHh--CCCEEEEEeC-CCCCCcccccCchhhHHHHHHHHHHHHHHHHHhcCcccCCCCcCH
Confidence 4799999999999999999999 8999999999 5788866 22332211 01
Q ss_pred ----------hhHHHHHHHHhhcCCCcEEEceEEEE---EEeee--cccccccCEEEEeeCCCCCC-CCCCCCCCCCCee
Q psy4525 65 ----------VKNVINTFTKTGDNPRVNFYGNICLG---QDISL--GDLTNAYHAVVLTYGADNDK-KLNIPGEDGKNII 128 (388)
Q Consensus 65 ----------~~~~~~~~~~~~~~~~i~~~~~~~v~---~~~~~--~~~~~~yd~lvlAtG~~~~~-~~~i~g~~~~~v~ 128 (388)
...+...+...+.+.+++++.+.... ..+.+ +.....||+||+|||+.+ . .|++||.+ .++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~i~~~~v~~~~~~~~~~~d~lviAtG~~p-~~~p~i~G~~--~~~ 158 (463)
T 4dna_A 82 AKLVAAKEQEIARLEGLYRKGLANAGAEILDTRAELAGPNTVKLLASGKTVTAERIVIAVGGHP-SPHDALPGHE--LCI 158 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCEEEESCEEESSSSEEEETTTTEEEEEEEEEECCCEEE-CCCTTSTTGG--GCB
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEecCCeEEEeCEEEEecCCCc-ccCCCCCCcc--ccc
Confidence 11223334445556688887664332 12334 222348999999999987 4 66788765 344
Q ss_pred ecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcc
Q psy4525 129 SARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGAL 208 (388)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~ 208 (388)
+..++.. ....+++++|||+|++|+|+|..|. +.+ .+|+++.|.+.+
T Consensus 159 ~~~~~~~------------~~~~~~~v~ViGgG~~g~e~A~~l~--------------------~~g-~~Vt~v~~~~~~ 205 (463)
T 4dna_A 159 TSNEAFD------------LPALPESILIAGGGYIAVEFANIFH--------------------GLG-VKTTLIYRGKEI 205 (463)
T ss_dssp CHHHHTT------------CSSCCSEEEEECCSHHHHHHHHHHH--------------------HTT-CEEEEECSSSSS
T ss_pred cHHHHhh------------hhcCCCeEEEECCCHHHHHHHHHHH--------------------HcC-CeEEEEEcCCcc
Confidence 4444331 1223789999999999999999876 233 479999998765
Q ss_pred cccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCC
Q psy4525 209 QVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLND 288 (388)
Q Consensus 209 ~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~ 288 (388)
...+. +++ .+.+.+.+. +.||++++++.++++..++
T Consensus 206 l~~~~-~~~-------------------------------~~~l~~~l~------------~~Gv~i~~~~~v~~i~~~~ 241 (463)
T 4dna_A 206 LSRFD-QDM-------------------------------RRGLHAAME------------EKGIRILCEDIIQSVSADA 241 (463)
T ss_dssp STTSC-HHH-------------------------------HHHHHHHHH------------HTTCEEECSCCEEEEEECT
T ss_pred ccccC-HHH-------------------------------HHHHHHHHH------------HCCCEEECCCEEEEEEEcC
Confidence 43322 121 122222222 5799999999999998754
Q ss_pred CCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 289 NGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 289 ~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
++. ..+.. +.+++ ++||.||+|+|++|++.. .++++++++.+.+|+..
T Consensus 242 ~~~-~~v~~-------~~~g~-i~aD~Vv~a~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~ 294 (463)
T 4dna_A 242 DGR-RVATT-------MKHGE-IVADQVMLALGRMPNTNGLGLEAAGVRTNELGAIIVDAFS 294 (463)
T ss_dssp TSC-EEEEE-------SSSCE-EEESEEEECSCEEESCTTSSTGGGTCCBCTTSCBCCCTTC
T ss_pred CCE-EEEEE-------cCCCe-EEeCEEEEeeCcccCCCCCCccccCceECCCCCEeECcCC
Confidence 443 23430 23455 999999999999999752 35667766667777654
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-25 Score=217.04 Aligned_cols=244 Identities=16% Similarity=0.182 Sum_probs=153.5
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCc---eee---CCCCCCcchhHHHHHHHHhhcCCCcEEEceE
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGL---VRY---GVAPDHPEVKNVINTFTKTGDNPRVNFYGNI 87 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~---~~~---g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~ 87 (388)
++||||||||||++||..|++..+..+|+|||+++..++. +.+ +..... ...+.....+++++.+++++.++
T Consensus 1 PKVvIIG~G~AGl~aA~~l~~~g~~~~V~lie~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~ 78 (437)
T 4eqs_A 1 PKIVVVGAVAGGATCASQIRRLDKESDIIIFEKDRDMSFANCALPYVIGEVVEDR--RYALAYTPEKFYDRKQITVKTYH 78 (437)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHCSSSCEEEEESSSCSSBCGGGHHHHHTTSSCCG--GGTBCCCHHHHHHHHCCEEEETE
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCCcchhHHHHcCCccch--hhhhhcCHHHHHHhcCCEEEeCC
Confidence 4799999999999999999995455789999998764321 111 110110 00011111223445678887766
Q ss_pred EEEE-E-----eeecc------cccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeE
Q psy4525 88 CLGQ-D-----ISLGD------LTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEA 155 (388)
Q Consensus 88 ~v~~-~-----~~~~~------~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v 155 (388)
.+.. + ++... ....||+||||||+.+ +.|++||. +++..+.+.... .+........++++
T Consensus 79 ~V~~id~~~~~~~~~~~~~~~~~~~~yd~lVIATGs~p-~~p~i~g~---~~~~~~~~~~~~----~l~~~~~~~~~~~v 150 (437)
T 4eqs_A 79 EVIAINDERQTVSVLNRKTNEQFEESYDKLILSPGASA-NSLGFESD---ITFTLRNLEDTD----AIDQFIKANQVDKV 150 (437)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEECSEEEECCCEEE-CCCCCCCT---TEECCSSHHHHH----HHHHHHHHHTCCEE
T ss_pred eEEEEEccCcEEEEEeccCCceEEEEcCEEEECCCCcc-ccccccCc---eEEeeccHHHHH----HHHHhhhccCCcEE
Confidence 5422 1 11111 1237999999999987 57777764 344333322110 00000011236899
Q ss_pred EEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEeccccc
Q psy4525 156 TILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQL 235 (388)
Q Consensus 156 vVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~ 235 (388)
+|||||++|+|+|..+. +.+ .+||+++|++.+...+.+
T Consensus 151 vViGgG~ig~E~A~~l~--------------------~~g-~~Vtlv~~~~~ll~~~d~--------------------- 188 (437)
T 4eqs_A 151 LVVGAGYVSLEVLENLY--------------------ERG-LHPTLIHRSDKINKLMDA--------------------- 188 (437)
T ss_dssp EEECCSHHHHHHHHHHH--------------------HHT-CEEEEEESSSCCSTTSCG---------------------
T ss_pred EEECCccchhhhHHHHH--------------------hcC-Ccceeeeeeccccccccc---------------------
Confidence 99999999999999776 123 579999999876433221
Q ss_pred ccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecce
Q psy4525 236 CGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGI 315 (388)
Q Consensus 236 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~ 315 (388)
...+.+.+.+. ++||+++++..++++.. . .+. ..++++++||.
T Consensus 189 -----------~~~~~~~~~l~------------~~gV~i~~~~~v~~~~~---~---~v~--------~~~g~~~~~D~ 231 (437)
T 4eqs_A 189 -----------DMNQPILDELD------------KREIPYRLNEEINAING---N---EIT--------FKSGKVEHYDM 231 (437)
T ss_dssp -----------GGGHHHHHHHH------------HTTCCEEESCCEEEEET---T---EEE--------ETTSCEEECSE
T ss_pred -----------hhHHHHHHHhh------------ccceEEEeccEEEEecC---C---eee--------ecCCeEEeeee
Confidence 11223333333 67999999999998863 1 122 34567899999
Q ss_pred EEEccccCCccC---CCCCcccCCCccccCCCCC
Q psy4525 316 AFRSIGYQSRCV---DSDIPFNEKSCTVIPKEGV 346 (388)
Q Consensus 316 Vi~a~G~~p~~~---~~~l~~~~~~gi~l~~~~~ 346 (388)
|++|+|++||+. ..++.++++++|.+|+...
T Consensus 232 vl~a~G~~Pn~~~~~~~gl~~~~~G~I~vd~~~~ 265 (437)
T 4eqs_A 232 IIEGVGTHPNSKFIESSNIKLDRKGFIPVNDKFE 265 (437)
T ss_dssp EEECCCEEESCGGGTTSSCCCCTTSCEECCTTCB
T ss_pred EEEEeceecCcHHHHhhhhhhccCCcEecCCCcc
Confidence 999999999974 2567788777788887654
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=209.11 Aligned_cols=245 Identities=18% Similarity=0.223 Sum_probs=168.8
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceee--CCC--CC--CcchhHHHHHHHHhhcCCCcEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY--GVA--PD--HPEVKNVINTFTKTGDNPRVNFY 84 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~--g~~--p~--~~~~~~~~~~~~~~~~~~~i~~~ 84 (388)
...++|+||||||||+++|.+|++ .|.+|+++|+ .+||.|.. ++. +. +....++..++.+.+.+++++++
T Consensus 210 ~~~~dVvIIGgG~AGl~aA~~la~--~G~~v~lie~--~~GG~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~gv~v~ 285 (521)
T 1hyu_A 210 RDAYDVLIVGSGPAGAAAAVYSAR--KGIRTGLMGE--RFGGQVLDTVDIENYISVPKTEGQKLAGALKAHVSDYDVDVI 285 (521)
T ss_dssp SCCEEEEEECCSHHHHHHHHHHHH--TTCCEEEECS--STTGGGTTCSCBCCBTTBSSBCHHHHHHHHHHHHHTSCEEEE
T ss_pred cCcccEEEECCcHHHHHHHHHHHh--CCCeEEEEEC--CCCCcccccccccccCCCCCCCHHHHHHHHHHHHHHcCCEEE
Confidence 346899999999999999999999 8999999986 47777642 220 11 22456777888888888999999
Q ss_pred ceEEEE-E----------Eeeeccc-ccccCEEEEeeCCCCCCCCCCCCCCC---CCeeecccccccccCCCCccccCcC
Q psy4525 85 GNICLG-Q----------DISLGDL-TNAYHAVVLTYGADNDKKLNIPGEDG---KNIISARSFVGWYNGLPEDASLDLS 149 (388)
Q Consensus 85 ~~~~v~-~----------~~~~~~~-~~~yd~lvlAtG~~~~~~~~i~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~~ 149 (388)
.++.+. . .+++.++ ...||+||+|||+.+ +.+++||.+. .+++... .+. ...
T Consensus 286 ~~~~v~~i~~~~~~~~~~~V~~~~g~~~~~d~vVlAtG~~~-~~~~ipG~~~~~~~~v~~~~----------~~~--~~~ 352 (521)
T 1hyu_A 286 DSQSASKLVPAATEGGLHQIETASGAVLKARSIIIATGAKW-RNMNVPGEDQYRTKGVTYCP----------HCD--GPL 352 (521)
T ss_dssp CSCCEEEEECCSSTTSCEEEEETTSCEEEEEEEEECCCEEE-CCCCCTTTTTTTTTTEECCT----------TCC--GGG
T ss_pred cCCEEEEEEeccCCCceEEEEECCCCEEEcCEEEECCCCCc-CCCCCCChhhhcCceEEEee----------cCc--hhh
Confidence 875442 1 1333333 347999999999987 5778888641 2222111 111 122
Q ss_pred CCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEE
Q psy4525 150 LDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTV 229 (388)
Q Consensus 150 ~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~ 229 (388)
..+++|+|||+|++|+|+|..|+ ....+|+++.|.+.+... +
T Consensus 353 ~~~k~V~ViGgG~~g~E~A~~L~---------------------~~g~~Vtlv~~~~~l~~~---~-------------- 394 (521)
T 1hyu_A 353 FKGKRVAVIGGGNSGVEAAIDLA---------------------GIVEHVTLLEFAPEMKAD---Q-------------- 394 (521)
T ss_dssp GBTSEEEEECCSHHHHHHHHHHH---------------------HHBSEEEEECSSSSCCSC---H--------------
T ss_pred cCCCeEEEECCCHHHHHHHHHHH---------------------hhCCEEEEEEeCcccCcC---H--------------
Confidence 45799999999999999999886 123589999988764311 0
Q ss_pred ecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCcee
Q psy4525 230 FRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTE 309 (388)
Q Consensus 230 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~ 309 (388)
.+...+. ...||++++++.++++..+ ++++.++.+.+. .+++..
T Consensus 395 ---------------------~l~~~l~-----------~~~gV~v~~~~~v~~i~~~-~~~v~~v~~~~~---~~g~~~ 438 (521)
T 1hyu_A 395 ---------------------VLQDKVR-----------SLKNVDIILNAQTTEVKGD-GSKVVGLEYRDR---VSGDIH 438 (521)
T ss_dssp ---------------------HHHHHHT-----------TCTTEEEECSEEEEEEEEC-SSSEEEEEEEET---TTCCEE
T ss_pred ---------------------HHHHHHh-----------cCCCcEEEeCCEEEEEEcC-CCcEEEEEEEeC---CCCceE
Confidence 0111111 1268999999999999864 367777777542 134456
Q ss_pred EEecceEEEccccCCccC--CCCCcccCCCccccCCCCC
Q psy4525 310 LIPSGIAFRSIGYQSRCV--DSDIPFNEKSCTVIPKEGV 346 (388)
Q Consensus 310 ~l~~D~Vi~a~G~~p~~~--~~~l~~~~~~gi~l~~~~~ 346 (388)
++++|.||+|+|++||+. ...+.+++++++.+|+...
T Consensus 439 ~i~~D~vi~a~G~~pn~~~l~~~l~~~~~G~I~Vd~~~~ 477 (521)
T 1hyu_A 439 SVALAGIFVQIGLLPNTHWLEGALERNRMGEIIIDAKCE 477 (521)
T ss_dssp EEECSEEEECCCEEESCGGGTTTSCBCTTSCBCCCTTCB
T ss_pred EEEcCEEEECcCCCCCchHHhhhhccCCCCcEEeCCCCC
Confidence 899999999999999872 2235666666677776543
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.6e-24 Score=210.78 Aligned_cols=250 Identities=18% Similarity=0.230 Sum_probs=163.6
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCC---CCC-c--chhHHHHHHHHhhcCCCcEEEceE
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVA---PDH-P--EVKNVINTFTKTGDNPRVNFYGNI 87 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~---p~~-~--~~~~~~~~~~~~~~~~~i~~~~~~ 87 (388)
++|+|||||+||+++|..|++..++.+|+|||+++.++. +.++.. ... . ...++.....+.+++.+++++.+.
T Consensus 1 ~dvvIIGgG~aGl~aA~~l~~~~~g~~V~lie~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~gv~~~~~~ 79 (452)
T 2cdu_A 1 MKVIVVGCTHAGTFAVKQTIADHPDADVTAYEMNDNISF-LSCGIALYLGKEIKNNDPRGLFYSSPEELSNLGANVQMRH 79 (452)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTCEEEEEESSSCCCB-CGGGHHHHHTTCBGGGCGGGGBSCCHHHHHHTTCEEEESE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCc-ccccchhhhcCCcccCCHHHhhhcCHHHHHHcCCEEEeCC
Confidence 489999999999999999999545999999999876432 111110 000 0 122222222334455788887776
Q ss_pred EEEE------Eeeecc------cccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeE
Q psy4525 88 CLGQ------DISLGD------LTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEA 155 (388)
Q Consensus 88 ~v~~------~~~~~~------~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v 155 (388)
.+.. .+.+.+ ....||+||+|||+.+ +.+++||.+.+++++..++....... .....++++
T Consensus 80 ~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtGs~p-~~p~i~g~~~~~v~~~~~~~~~~~~~------~~~~~~~~v 152 (452)
T 2cdu_A 80 QVTNVDPETKTIKVKDLITNEEKTEAYDKLIMTTGSKP-TVPPIPGIDSSRVYLCKNYNDAKKLF------EEAPKAKTI 152 (452)
T ss_dssp EEEEEEGGGTEEEEEETTTCCEEEEECSEEEECCCEEE-CCCCCTTTTSTTEEECSSHHHHHHHH------HHGGGCSEE
T ss_pred EEEEEEcCCCEEEEEecCCCceEEEECCEEEEccCCCc-CCCCCCCCCCCCEEEeCcHHHHHHHH------HHhccCCeE
Confidence 5431 133321 2248999999999987 57789998777888766544211000 111247899
Q ss_pred EEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEeccccc
Q psy4525 156 TILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQL 235 (388)
Q Consensus 156 vVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~ 235 (388)
+|||+|++|+|+|..|. +. ..+|++++|.+.+.....++++.
T Consensus 153 vViGgG~~g~E~A~~l~--------------------~~-g~~Vtlv~~~~~~l~~~~~~~~~----------------- 194 (452)
T 2cdu_A 153 TIIGSGYIGAELAEAYS--------------------NQ-NYNVNLIDGHERVLYKYFDKEFT----------------- 194 (452)
T ss_dssp EEECCSHHHHHHHHHHH--------------------TT-TCEEEEEESSSSTTTTTSCHHHH-----------------
T ss_pred EEECcCHHHHHHHHHHH--------------------hc-CCEEEEEEcCCchhhhhhhhhHH-----------------
Confidence 99999999999999876 23 35799999988764422222221
Q ss_pred ccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecce
Q psy4525 236 CGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGI 315 (388)
Q Consensus 236 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~ 315 (388)
+.+.+.+. +.||++++++.++++..+ ++.+..+. + ++++++||.
T Consensus 195 --------------~~l~~~l~------------~~Gv~i~~~~~v~~i~~~-~~~v~~v~--------~-~g~~i~~D~ 238 (452)
T 2cdu_A 195 --------------DILAKDYE------------AHGVNLVLGSKVAAFEEV-DDEIITKT--------L-DGKEIKSDI 238 (452)
T ss_dssp --------------HHHHHHHH------------HTTCEEEESSCEEEEEEE-TTEEEEEE--------T-TSCEEEESE
T ss_pred --------------HHHHHHHH------------HCCCEEEcCCeeEEEEcC-CCeEEEEE--------e-CCCEEECCE
Confidence 12222222 579999999999999852 34554443 2 346899999
Q ss_pred EEEccccCCccC--CCCCcccCCCccccCCCC
Q psy4525 316 AFRSIGYQSRCV--DSDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 316 Vi~a~G~~p~~~--~~~l~~~~~~gi~l~~~~ 345 (388)
||+|+|++||+. ...+.+++++++.+|+..
T Consensus 239 vv~a~G~~p~~~ll~~~l~~~~~G~i~Vd~~~ 270 (452)
T 2cdu_A 239 AILCIGFRPNTELLKGKVAMLDNGAIITDEYM 270 (452)
T ss_dssp EEECCCEEECCGGGTTTSCBCTTSCBCCCTTS
T ss_pred EEECcCCCCCHHHHHHhhhcCCCCCEEECCCc
Confidence 999999999974 222566666668887653
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=4.5e-24 Score=210.33 Aligned_cols=240 Identities=14% Similarity=0.176 Sum_probs=158.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCC----------------------------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDH---------------------------- 62 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~---------------------------- 62 (388)
..++|+||||||||+++|..|++ .|.+|+|||+ +.+||.| ++++.|..
T Consensus 4 ~~~dvvIIG~G~aGl~aA~~l~~--~g~~V~lie~-~~~GG~~~~~g~~Psk~l~~~~~~~~~~~~~~~~~~~g~~~~~~ 80 (458)
T 1lvl_A 4 IQTTLLIIGGGPGGYVAAIRAGQ--LGIPTVLVEG-QALGGTCLNIGCIPSKALIHVAEQFHQASRFTEPSPLGISVASP 80 (458)
T ss_dssp EECSEEEECCSHHHHHHHHHHHH--HTCCEEEECS-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHTTSCCTTCCCCCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHH--CCCEEEEEcc-CCCCCcCCCcCcHhHHHHHHHHHHHHHHhhcccccccCcccCCC
Confidence 34799999999999999999999 7999999999 5788876 33332210
Q ss_pred -cchhHHHH-----------HHHHhhcCCCcEEEceEEEEE---EeeecccccccCEEEEeeCCCCCCCCC-CCCCCCCC
Q psy4525 63 -PEVKNVIN-----------TFTKTGDNPRVNFYGNICLGQ---DISLGDLTNAYHAVVLTYGADNDKKLN-IPGEDGKN 126 (388)
Q Consensus 63 -~~~~~~~~-----------~~~~~~~~~~i~~~~~~~v~~---~~~~~~~~~~yd~lvlAtG~~~~~~~~-i~g~~~~~ 126 (388)
....++.. .+.+.+++.+++++.++.+.. .+++.+....||+||+|||+.+. .++ +|. +. +
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~~~~d~lviATGs~p~-~~~~~~~-~~-~ 157 (458)
T 1lvl_A 81 RLDIGQSVAWKDGIVDRLTTGVAALLKKHGVKVVHGWAKVLDGKQVEVDGQRIQCEHLLLATGSSSV-ELPMLPL-GG-P 157 (458)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSCEEEEETTEEEETTEEEECSEEEECCCEEEC-CBTTBCC-BT-T
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEEEEEEccCCEEEEeeEEEEeCEEEEeCCCCCC-CCCCCCc-cC-c
Confidence 01112211 233456678899887765432 24444433489999999999873 443 552 21 4
Q ss_pred eeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecC
Q psy4525 127 IISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRG 206 (388)
Q Consensus 127 v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~ 206 (388)
+++..++.. ....+++++|||+|++|+|+|..|. +.+ .+|+++.+.+
T Consensus 158 v~~~~~~~~------------~~~~~~~vvViGgG~~g~e~A~~l~--------------------~~g-~~Vtlv~~~~ 204 (458)
T 1lvl_A 158 VISSTEALA------------PKALPQHLVVVGGGYIGLELGIAYR--------------------KLG-AQVSVVEARE 204 (458)
T ss_dssp EECHHHHTC------------CSSCCSEEEEECCSHHHHHHHHHHH--------------------HHT-CEEEEECSSS
T ss_pred EecHHHHhh------------hhccCCeEEEECcCHHHHHHHHHHH--------------------HCC-CeEEEEEcCC
Confidence 655555431 1123689999999999999999776 223 4799999987
Q ss_pred cccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeee
Q psy4525 207 ALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKL 286 (388)
Q Consensus 207 ~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~ 286 (388)
.+...+ ++++. +.+.+.+. +.||++++++.++++..
T Consensus 205 ~~l~~~-~~~~~-------------------------------~~l~~~l~------------~~gv~i~~~~~v~~i~~ 240 (458)
T 1lvl_A 205 RILPTY-DSELT-------------------------------APVAESLK------------KLGIALHLGHSVEGYEN 240 (458)
T ss_dssp SSSTTS-CHHHH-------------------------------HHHHHHHH------------HHTCEEETTCEEEEEET
T ss_pred cccccc-CHHHH-------------------------------HHHHHHHH------------HCCCEEEECCEEEEEEe
Confidence 764322 22221 12222222 57999999999999974
Q ss_pred CCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 287 NDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 287 ~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
+.+ .+.. ..++.+++++|.||+|+|++||... .+++++++ ++.+|+..
T Consensus 241 ---~~v-~v~~------~~G~~~~i~~D~vv~a~G~~p~~~~l~~~~~g~~~~~~-~i~vd~~~ 293 (458)
T 1lvl_A 241 ---GCL-LAND------GKGGQLRLEADRVLVAVGRRPRTKGFNLECLDLKMNGA-AIAIDERC 293 (458)
T ss_dssp ---TEE-EEEC------SSSCCCEECCSCEEECCCEEECCSSSSGGGSCCCEETT-EECCCTTC
T ss_pred ---CCE-EEEE------CCCceEEEECCEEEECcCCCcCCCCCCcHhcCCcccCC-EEeECCCC
Confidence 222 2221 0233368999999999999999742 35666665 88887653
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.3e-24 Score=217.83 Aligned_cols=252 Identities=14% Similarity=0.169 Sum_probs=168.2
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCC---CCC--cchhHHHHHHHHhhcCCCcEEEc
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVA---PDH--PEVKNVINTFTKTGDNPRVNFYG 85 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~---p~~--~~~~~~~~~~~~~~~~~~i~~~~ 85 (388)
+.+++|+|||||+||++||..|++..++.+|+|||+++.++ ...++.. +.. .....+..++..+.++++++++.
T Consensus 34 ~~~~~VvIIGgG~AGl~aA~~L~~~~~g~~V~vie~~~~~~-~~~~~lp~~~~g~~~~~~~~~~~~~~~~~~~~gi~v~~ 112 (588)
T 3ics_A 34 WGSRKIVVVGGVAGGASVAARLRRLSEEDEIIMVERGEYIS-FANCGLPYYIGGVITERQKLLVQTVERMSKRFNLDIRV 112 (588)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHCSSSEEEEECSSSCSS-BCGGGHHHHHTTSSCCGGGGBSSCHHHHHHHTTCEEEC
T ss_pred ccCCCEEEECCcHHHHHHHHHHHhhCcCCCEEEEECCCCcc-ccCCCCchhhcCcCCChHHhhccCHHHHHHhcCcEEEE
Confidence 45689999999999999999999955589999999998764 1111110 111 11122233344555567899888
Q ss_pred eEEEEE------Eeeec---cc---ccccCEEEEeeCCCCCCCCCCCCC-CCCCeeecccccccccCCCCccccCcCCCC
Q psy4525 86 NICLGQ------DISLG---DL---TNAYHAVVLTYGADNDKKLNIPGE-DGKNIISARSFVGWYNGLPEDASLDLSLDC 152 (388)
Q Consensus 86 ~~~v~~------~~~~~---~~---~~~yd~lvlAtG~~~~~~~~i~g~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (388)
++.+.. .+.+. +. ...||+||+|||+.+ +.+++||. +.+++++...+......... .....+
T Consensus 113 ~~~V~~id~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p-~~p~i~G~~~~~~v~~~~~~~~~~~~~~~----l~~~~~ 187 (588)
T 3ics_A 113 LSEVVKINKEEKTITIKNVTTNETYNEAYDVLILSPGAKP-IVPSIPGIEEAKALFTLRNVPDTDRIKAY----IDEKKP 187 (588)
T ss_dssp SEEEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEE-CCCCCTTTTTCTTEEECSSHHHHHHHHHH----HHHHCC
T ss_pred CCEEEEEECCCCEEEEeecCCCCEEEEeCCEEEECCCCCC-CCCCCCCcccCCCeEEeCCHHHHHHHHHH----HhhcCC
Confidence 776632 12221 12 237999999999987 57789998 77788877765422100000 001247
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecc
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRN 232 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~ 232 (388)
++++|||+|++|+|+|..|. +.+ .+|+++.|.+.+...+.. ++
T Consensus 188 ~~vvViGgG~~g~e~A~~l~--------------------~~g-~~Vtlv~~~~~~l~~~~~-~~--------------- 230 (588)
T 3ics_A 188 RHATVIGGGFIGVEMVENLR--------------------ERG-IEVTLVEMANQVMPPIDY-EM--------------- 230 (588)
T ss_dssp SEEEEECCSHHHHHHHHHHH--------------------HTT-CEEEEECSSSSSCTTSCH-HH---------------
T ss_pred CeEEEECCCHHHHHHHHHHH--------------------hCC-CeEEEEecCCcccccCCH-HH---------------
Confidence 89999999999999999876 233 579999998866544221 11
Q ss_pred cccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEe
Q psy4525 233 EQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIP 312 (388)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~ 312 (388)
.+.+.+.+. +.||++++++.++++..++ + .+.+ .++++++
T Consensus 231 ----------------~~~l~~~l~------------~~GV~i~~~~~v~~i~~~~-~---~v~~--------~~g~~i~ 270 (588)
T 3ics_A 231 ----------------AAYVHEHMK------------NHDVELVFEDGVDALEENG-A---VVRL--------KSGSVIQ 270 (588)
T ss_dssp ----------------HHHHHHHHH------------HTTCEEECSCCEEEEEGGG-T---EEEE--------TTSCEEE
T ss_pred ----------------HHHHHHHHH------------HcCCEEEECCeEEEEecCC-C---EEEE--------CCCCEEE
Confidence 112222222 5799999999999997532 2 2333 3456899
Q ss_pred cceEEEccccCCccC---CCCCcccCCCccccCCCC
Q psy4525 313 SGIAFRSIGYQSRCV---DSDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 313 ~D~Vi~a~G~~p~~~---~~~l~~~~~~gi~l~~~~ 345 (388)
||.||+|+|++|++. ..++++++++++.+|+..
T Consensus 271 ~D~Vi~a~G~~p~~~~l~~~g~~~~~~g~i~vd~~~ 306 (588)
T 3ics_A 271 TDMLILAIGVQPESSLAKGAGLALGVRGTIKVNEKF 306 (588)
T ss_dssp CSEEEECSCEEECCHHHHHTTCCBCGGGCBCCCTTS
T ss_pred cCEEEEccCCCCChHHHHhcCceEcCCCCEEECCcc
Confidence 999999999999973 256777777778887653
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=99.91 E-value=6e-24 Score=210.93 Aligned_cols=241 Identities=16% Similarity=0.218 Sum_probs=160.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCC--------------------------cc-
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDH--------------------------PE- 64 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~--------------------------~~- 64 (388)
.+||+||||||+|+++|..|++ .|.+|+|||+ +.+||.| +.||.|.. ..
T Consensus 26 ~~DVvVIGgG~aGl~aA~~la~--~G~~V~liEk-~~~GG~~~~~gcip~k~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 102 (484)
T 3o0h_A 26 DFDLFVIGSGSGGVRAARLAGA--LGKRVAIAEE-YRIGGTCVIRGCVPKKLYFYASQYAQEFSKSIGFGWKYADPIFNW 102 (484)
T ss_dssp SEEEEEECCSHHHHHHHHHHHH--TTCCEEEEES-SCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHGGGTBCCCCCEECH
T ss_pred CCCEEEECcCHHHHHHHHHHHh--CcCEEEEEeC-CCCCCceeccCccccHHHHHHHHHHHHHHHHHhCCcccCCCccCH
Confidence 4799999999999999999999 8999999999 5788876 33332211 00
Q ss_pred ----------hhHHHHHHHHhhcCCCcEEEceEEEEE---Eeee--cccccccCEEEEeeCCCCCCCCCCCCCCCCCeee
Q psy4525 65 ----------VKNVINTFTKTGDNPRVNFYGNICLGQ---DISL--GDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIIS 129 (388)
Q Consensus 65 ----------~~~~~~~~~~~~~~~~i~~~~~~~v~~---~~~~--~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~ 129 (388)
...+...+...+.+.+++++.+..... .+.+ +.....||+||+|||+.+.+.+++||.+ .+++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~i~~~~v~v~~~~~~~~~d~lviAtG~~p~~~p~i~G~~--~~~~ 180 (484)
T 3o0h_A 103 EKLVAAKNKEISRLEGLYREGLQNSNVHIYESRAVFVDEHTLELSVTGERISAEKILIATGAKIVSNSAIKGSD--LCLT 180 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCEEEEETTEEEETTTCCEEEEEEEEECCCEEECCC--CBTGG--GSBC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEeeCCEEEEecCCeEEEeCEEEEccCCCcccCCCCCCcc--cccc
Confidence 112333445556667888876643322 2334 2233489999999999873266788754 2343
Q ss_pred cccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCccc
Q psy4525 130 ARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQ 209 (388)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~ 209 (388)
..++.. ....+++++|||+|++|+|+|..|. +.+ .+|+++.|.+.+.
T Consensus 181 ~~~~~~------------~~~~~~~v~ViGgG~~g~e~A~~l~--------------------~~g-~~Vtli~~~~~~l 227 (484)
T 3o0h_A 181 SNEIFD------------LEKLPKSIVIVGGGYIGVEFANIFH--------------------GLG-VKTTLLHRGDLIL 227 (484)
T ss_dssp TTTGGG------------CSSCCSEEEEECCSHHHHHHHHHHH--------------------HTT-CEEEEECSSSSSS
T ss_pred HHHHHh------------HHhcCCcEEEECcCHHHHHHHHHHH--------------------HcC-CeEEEEECCCccc
Confidence 333331 1223789999999999999999775 233 4799999987654
Q ss_pred ccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCC
Q psy4525 210 VAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDN 289 (388)
Q Consensus 210 ~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~ 289 (388)
..+.+ ++ .+.+.+.+. +.||++++++.++++..++
T Consensus 228 ~~~~~-~~-------------------------------~~~l~~~l~------------~~Gv~i~~~~~V~~i~~~~- 262 (484)
T 3o0h_A 228 RNFDY-DL-------------------------------RQLLNDAMV------------AKGISIIYEATVSQVQSTE- 262 (484)
T ss_dssp TTSCH-HH-------------------------------HHHHHHHHH------------HHTCEEESSCCEEEEEECS-
T ss_pred cccCH-HH-------------------------------HHHHHHHHH------------HCCCEEEeCCEEEEEEeeC-
Confidence 33221 11 112222222 5799999999999998754
Q ss_pred CceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 290 GAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 290 ~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
+.+ .+.+ .++++++||.||+|+|++|+... .++++++++++.+|+..
T Consensus 263 ~~v-~v~~--------~~g~~i~aD~Vi~A~G~~p~~~~l~l~~~g~~~~~~G~i~vd~~~ 314 (484)
T 3o0h_A 263 NCY-NVVL--------TNGQTICADRVMLATGRVPNTTGLGLERAGVKVNEFGAVVVDEKM 314 (484)
T ss_dssp SSE-EEEE--------TTSCEEEESEEEECCCEEECCTTCCHHHHTCCBCTTSCBCCCTTS
T ss_pred CEE-EEEE--------CCCcEEEcCEEEEeeCCCcCCCCCChhhcCceECCCCCEeECCCC
Confidence 333 4443 34468999999999999999852 35667766667777654
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=99.91 E-value=4e-24 Score=212.49 Aligned_cols=242 Identities=13% Similarity=0.185 Sum_probs=153.6
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCC--------------------------cch
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDH--------------------------PEV 65 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~--------------------------~~~ 65 (388)
.+||+||||||||+++|..|++ .|.+|+|||+++ +||.| ++||.|.. ...
T Consensus 8 ~~DvvVIGgG~aGl~aA~~la~--~G~~V~liE~~~-~GGtc~~~gciPsk~l~~~a~~~~~~~~~~~~g~~~~~~~~~~ 84 (492)
T 3ic9_A 8 NVDVAIIGTGTAGMGAYRAAKK--HTDKVVLIEGGA-YGTTCARVGCMPSKLLIAAADASYHASQTDLFGIQVDRISVNG 84 (492)
T ss_dssp EEEEEEECCSHHHHHHHHHHHT--TCSCEEEEESSC-SSCHHHHHSHHHHHHHHHHHHHHHHHTCGGGGTEECSEEEECH
T ss_pred CCCEEEECCCHHHHHHHHHHHh--CCCcEEEEeCCC-CCCcccccChhcCHHHHHHHHHHHHHhhhhhcCcCCCCCccCH
Confidence 3799999999999999999999 899999999974 78876 33333211 112
Q ss_pred hHHHHHHHH-----------hhcC-CCcEEEceE-EEE--EEeeeccc-ccccCEEEEeeCCCCCCCCCCCCCCCCCeee
Q psy4525 66 KNVINTFTK-----------TGDN-PRVNFYGNI-CLG--QDISLGDL-TNAYHAVVLTYGADNDKKLNIPGEDGKNIIS 129 (388)
Q Consensus 66 ~~~~~~~~~-----------~~~~-~~i~~~~~~-~v~--~~~~~~~~-~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~ 129 (388)
.++..++.+ .+.. .+++++.+. .+. ..+.+.+. ...||+||||||+.+ +.|++++...+++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~a~~~~~~~v~~~~~~~~~~d~lViATGs~p-~~p~~~~~~~~~v~t 163 (492)
T 3ic9_A 85 KAVMKRIQTERDRFVGFVVESVESFDEQDKIRGFAKFLDEHTLQVDDHSQVIAKRIVIATGSRP-NYPEFLAAAGSRLLT 163 (492)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCGGGEEESCEEEEETTEEEETTTEEEEEEEEEECCCEEC-CCCHHHHTTGGGEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCeeEEEEEEEEecCCEEEEcCCcEEEeCEEEEccCCCC-cCCCCCCccCCcEEc
Confidence 222222211 1111 123232221 111 12444333 348999999999987 466655544556776
Q ss_pred cccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCccc
Q psy4525 130 ARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQ 209 (388)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~ 209 (388)
+.++.. ....+++++|||+|++|+|+|..|. +.+ .+|+++.|.+.+.
T Consensus 164 ~~~~~~------------~~~~~k~vvViGgG~ig~E~A~~l~--------------------~~g-~~Vtlv~~~~~~l 210 (492)
T 3ic9_A 164 NDNLFE------------LNDLPKSVAVFGPGVIGLELGQALS--------------------RLG-VIVKVFGRSGSVA 210 (492)
T ss_dssp HHHHTT------------CSSCCSEEEEESSCHHHHHHHHHHH--------------------HTT-CEEEEECCTTCCT
T ss_pred HHHHhh------------hhhcCCeEEEECCCHHHHHHHHHHH--------------------HcC-CeEEEEEECCccc
Confidence 666552 1223799999999999999999886 233 5799999998764
Q ss_pred ccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCC
Q psy4525 210 VAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDN 289 (388)
Q Consensus 210 ~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~ 289 (388)
..+. +++. +.+.+.+. +. |++++++.++++..++
T Consensus 211 ~~~d-~~~~-------------------------------~~l~~~l~------------~~-V~i~~~~~v~~i~~~~- 244 (492)
T 3ic9_A 211 NLQD-EEMK-------------------------------RYAEKTFN------------EE-FYFDAKARVISTIEKE- 244 (492)
T ss_dssp TCCC-HHHH-------------------------------HHHHHHHH------------TT-SEEETTCEEEEEEECS-
T ss_pred ccCC-HHHH-------------------------------HHHHHHHh------------hC-cEEEECCEEEEEEEcC-
Confidence 3322 2221 12222222 34 9999999999998754
Q ss_pred CceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccC
Q psy4525 290 GAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIP 342 (388)
Q Consensus 290 ~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~ 342 (388)
+.+. +.+.+ ..++.++++||.||+|+|++||+.. .++++++++.+.+|
T Consensus 245 ~~v~-v~~~~----~~G~~~~i~~D~Vi~a~G~~p~~~~l~l~~~gl~~~~~G~i~vd 297 (492)
T 3ic9_A 245 DAVE-VIYFD----KSGQKTTESFQYVLAATGRKANVDKLGLENTSIELDKKNSPLFD 297 (492)
T ss_dssp SSEE-EEEEC----TTCCEEEEEESEEEECSCCEESCSSSCGGGSCCCBCTTCCBCCC
T ss_pred CEEE-EEEEe----CCCceEEEECCEEEEeeCCccCCCCCChhhcCCEECCCCCEeEC
Confidence 3332 43321 0233368999999999999999742 35666665556666
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-24 Score=214.30 Aligned_cols=245 Identities=14% Similarity=0.193 Sum_probs=159.5
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCC--------------------------cch
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDH--------------------------PEV 65 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~--------------------------~~~ 65 (388)
.++|+||||||||+++|..|++ .|.+|+|||+.+.+||.| +.++.|.. ...
T Consensus 6 ~~dVvIIGaG~aGl~aA~~l~~--~G~~V~liE~~~~~GG~~~~~g~~psk~ll~~~~~~~~~~~~~~~gi~~~~~~~~~ 83 (482)
T 1ojt_A 6 EYDVVVLGGGPGGYSAAFAAAD--EGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVIDEVRHLAANGIKYPEPELDI 83 (482)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSCSSHHHHHHSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCCH
T ss_pred cCCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCCCCceeeecccchHHHHHHHHHHHHHHHHHhCCcccCCCccCH
Confidence 4799999999999999999999 899999999988888765 22322210 011
Q ss_pred hHH-----------HHHHHHhhcCCCcEEEceEEEEE---Eeee--cc-------------cccccCEEEEeeCCCCCCC
Q psy4525 66 KNV-----------INTFTKTGDNPRVNFYGNICLGQ---DISL--GD-------------LTNAYHAVVLTYGADNDKK 116 (388)
Q Consensus 66 ~~~-----------~~~~~~~~~~~~i~~~~~~~v~~---~~~~--~~-------------~~~~yd~lvlAtG~~~~~~ 116 (388)
..+ ...+...+++.+++++.++.+.. .+.+ .+ ....||+||+|||+.+. .
T Consensus 84 ~~~~~~~~~~~~~l~~~~~~~~~~~gv~~~~g~~~~~~~~~v~v~~~~g~~~~~~~~~g~~~~i~ad~lViAtGs~p~-~ 162 (482)
T 1ojt_A 84 DMLRAYKDGVVSRLTGGLAGMAKSRKVDVIQGDGQFLDPHHLEVSLTAGDAYEQAAPTGEKKIVAFKNCIIAAGSRVT-K 162 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEEEETTEEEEEEEEEEETTEEEEEEEEEEEEEEEEEECCCEEEC-C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeeEEEEccCCEEEEEecCCcccccccccCcceEEEcCEEEECCCCCCC-C
Confidence 111 11233455667898887765421 1222 11 23479999999999874 4
Q ss_pred CC-CCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCC
Q psy4525 117 LN-IPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSR 195 (388)
Q Consensus 117 ~~-i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~ 195 (388)
++ ++. + .++++..++.. ....+++++|||+|++|+|+|..|. +.+
T Consensus 163 ~~~i~~-~-~~v~~~~~~~~------------~~~~~~~vvViGgG~ig~E~A~~l~--------------------~~G 208 (482)
T 1ojt_A 163 LPFIPE-D-PRIIDSSGALA------------LKEVPGKLLIIGGGIIGLEMGTVYS--------------------TLG 208 (482)
T ss_dssp CSSCCC-C-TTEECHHHHTT------------CCCCCSEEEEESCSHHHHHHHHHHH--------------------HHT
T ss_pred CCCCCc-c-CcEEcHHHHhc------------ccccCCeEEEECCCHHHHHHHHHHH--------------------HcC
Confidence 44 552 2 25665555441 1123789999999999999999876 123
Q ss_pred CcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEE
Q psy4525 196 IKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRP 275 (388)
Q Consensus 196 ~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 275 (388)
.+|+++.|.+.+...+. +++. +.+.+.+ .+.||++
T Consensus 209 -~~Vtlv~~~~~~l~~~~-~~~~-------------------------------~~l~~~l------------~~~gV~i 243 (482)
T 1ojt_A 209 -SRLDVVEMMDGLMQGAD-RDLV-------------------------------KVWQKQN------------EYRFDNI 243 (482)
T ss_dssp -CEEEEECSSSSSSTTSC-HHHH-------------------------------HHHHHHH------------GGGEEEE
T ss_pred -CeEEEEEECCccccccC-HHHH-------------------------------HHHHHHH------------HhcCCEE
Confidence 47999999987644322 1211 1222222 2689999
Q ss_pred EecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 276 IFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 276 ~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
++++.++++..++ ....+.+.+. .+.+++++||.||+|+|++||+.. .++++++++.+.+|+..
T Consensus 244 ~~~~~v~~i~~~~--~~~~v~~~~~----~~~g~~~~~D~vv~a~G~~p~~~~l~~~~~gl~~~~~G~i~vd~~~ 312 (482)
T 1ojt_A 244 MVNTKTVAVEPKE--DGVYVTFEGA----NAPKEPQRYDAVLVAAGRAPNGKLISAEKAGVAVTDRGFIEVDKQM 312 (482)
T ss_dssp ECSCEEEEEEEET--TEEEEEEESS----SCCSSCEEESCEEECCCEEECGGGTTGGGTTCCCCTTSCCCCCTTS
T ss_pred EECCEEEEEEEcC--CeEEEEEecc----CCCceEEEcCEEEECcCCCcCCCCCChhhcCceeCCCCCEeeCCCc
Confidence 9999999998643 2234444220 112457899999999999999721 45666655558887653
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.5e-24 Score=206.40 Aligned_cols=246 Identities=13% Similarity=0.171 Sum_probs=162.6
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCC--CcEEEEcCCCCCCCceee----CCCCCCcchhHHHH-HHHHhhcCCCcEEEc
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQ--STVDIYEKLPVPFGLVRY----GVAPDHPEVKNVIN-TFTKTGDNPRVNFYG 85 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g--~~v~lie~~~~~gg~~~~----g~~p~~~~~~~~~~-~~~~~~~~~~i~~~~ 85 (388)
.++|+|||||+||+++|..|++ .| .+|+++|+++ |..+.. ...+......++.. ....++++.+++++.
T Consensus 4 ~~dvvIIG~G~aGl~aA~~l~~--~g~~~~V~lie~~~--g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 79 (384)
T 2v3a_A 4 RAPLVIIGTGLAGYNLAREWRK--LDGETPLLMITADD--GRSYSKPMLSTGFSKNKDADGLAMAEPGAMAEQLNARILT 79 (384)
T ss_dssp CCCEEEECCSHHHHHHHHHHHT--TCSSSCEEEECSSC--CCEECGGGGGGTTTTTCCHHHHEEECHHHHHHHTTCEEEC
T ss_pred CCcEEEECChHHHHHHHHHHHh--hCCCCCEEEEECCC--CCccCcccccHHHhCCCCHHHhhccCHHHHHHhCCcEEEe
Confidence 4799999999999999999999 66 6799999874 322211 11122222333322 234445567888886
Q ss_pred eEEEE------EEeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEc
Q psy4525 86 NICLG------QDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILG 159 (388)
Q Consensus 86 ~~~v~------~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG 159 (388)
+..+. ..+.+.+....||+||+|||+.+ +.|++||.+.+++++..++..... +. .....+++++|||
T Consensus 80 ~~~v~~i~~~~~~v~~~~~~~~~d~lviAtG~~p-~~p~i~g~~~~~v~~~~~~~~~~~----~~--~~~~~~~~v~ViG 152 (384)
T 2v3a_A 80 HTRVTGIDPGHQRIWIGEEEVRYRDLVLAWGAEP-IRVPVEGDAQDALYPINDLEDYAR----FR--QAAAGKRRVLLLG 152 (384)
T ss_dssp SCCCCEEEGGGTEEEETTEEEECSEEEECCCEEE-CCCCCBSTTTTCEEECSSHHHHHH----HH--HHHTTCCEEEEEC
T ss_pred CCEEEEEECCCCEEEECCcEEECCEEEEeCCCCc-CCCCCCCcCcCCEEEECCHHHHHH----HH--HhhccCCeEEEEC
Confidence 65432 12444444458999999999988 577899887678888777653211 00 1112379999999
Q ss_pred CChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccch
Q psy4525 160 QGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVH 239 (388)
Q Consensus 160 gG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~ 239 (388)
+|.+|+|+|..|. +.+ .+|+++.+.+.+...+.++++.
T Consensus 153 gG~~g~e~A~~l~--------------------~~g-~~Vtlv~~~~~~~~~~~~~~~~--------------------- 190 (384)
T 2v3a_A 153 AGLIGCEFANDLS--------------------SGG-YQLDVVAPCEQVMPGLLHPAAA--------------------- 190 (384)
T ss_dssp CSHHHHHHHHHHH--------------------HTT-CEEEEEESSSSSSTTTSCHHHH---------------------
T ss_pred CCHHHHHHHHHHH--------------------hCC-CeEEEEecCcchhhcccCHHHH---------------------
Confidence 9999999999876 233 4799999987654432222221
Q ss_pred hhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEc
Q psy4525 240 EASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRS 319 (388)
Q Consensus 240 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a 319 (388)
+.+.+.+. +.|+++++++.++++..++ + ...+.+ .++++++||.||+|
T Consensus 191 ----------~~l~~~l~------------~~gv~i~~~~~v~~i~~~~-~-~~~v~~--------~~g~~i~~d~vv~a 238 (384)
T 2v3a_A 191 ----------KAVQAGLE------------GLGVRFHLGPVLASLKKAG-E-GLEAHL--------SDGEVIPCDLVVSA 238 (384)
T ss_dssp ----------HHHHHHHH------------TTTCEEEESCCEEEEEEET-T-EEEEEE--------TTSCEEEESEEEEC
T ss_pred ----------HHHHHHHH------------HcCCEEEeCCEEEEEEecC-C-EEEEEE--------CCCCEEECCEEEEC
Confidence 12222222 5799999999999998643 2 233433 34568999999999
Q ss_pred cccCCcc-C--CCCCcccCCCccccCCCC
Q psy4525 320 IGYQSRC-V--DSDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 320 ~G~~p~~-~--~~~l~~~~~~gi~l~~~~ 345 (388)
+|++|+. + ..+++++ +|+.+|++.
T Consensus 239 ~G~~p~~~l~~~~g~~~~--~gi~vd~~~ 265 (384)
T 2v3a_A 239 VGLRPRTELAFAAGLAVN--RGIVVDRSL 265 (384)
T ss_dssp SCEEECCHHHHHTTCCBS--SSEEECTTC
T ss_pred cCCCcCHHHHHHCCCCCC--CCEEECCCC
Confidence 9999997 2 2466665 368877653
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-23 Score=209.92 Aligned_cols=249 Identities=15% Similarity=0.179 Sum_probs=154.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC--------CCCCce-eeCCCCC---------------------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP--------VPFGLV-RYGVAPD--------------------- 61 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~--------~~gg~~-~~g~~p~--------------------- 61 (388)
..+||+||||||||+++|..|++ .|.+|+|||+.+ .+||.| +.||.|.
T Consensus 31 ~~~DVvVIGgGpaGl~aA~~la~--~G~~V~liEk~~~~~~~~~~~~GGtc~~~GciPsk~l~~~~~~~~~~~~~~~~g~ 108 (519)
T 3qfa_A 31 YDYDLIIIGGGSGGLAAAKEAAQ--YGKKVMVLDFVTPTPLGTRWGLGGTCVNVGCIPKKLMHQAALLGQALQDSRNYGW 108 (519)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHH--TTCCEEEECCCCCCTTCCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTB
T ss_pred CCCCEEEECCCHHHHHHHHHHHh--CCCeEEEEeccCccccccCCCcccccCCcCccchHHHHHHHHHHHHHHHHHhcCc
Confidence 45799999999999999999999 899999999854 678876 3344331
Q ss_pred ------CcchhHHHH-----------HHHHhhcCCCcEEEceEEEEE-----Eeeeccc---ccccCEEEEeeCCCCCCC
Q psy4525 62 ------HPEVKNVIN-----------TFTKTGDNPRVNFYGNICLGQ-----DISLGDL---TNAYHAVVLTYGADNDKK 116 (388)
Q Consensus 62 ------~~~~~~~~~-----------~~~~~~~~~~i~~~~~~~v~~-----~~~~~~~---~~~yd~lvlAtG~~~~~~ 116 (388)
......+.. .+...++..+++++.+..... .+...+. ...||+||||||+.+ +.
T Consensus 109 ~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~gV~~i~g~a~~~d~~~v~v~~~~g~~~~i~~d~lViATGs~p-~~ 187 (519)
T 3qfa_A 109 KVEETVKHDWDRMIEAVQNHIGSLNWGYRVALREKKVVYENAYGQFIGPHRIKATNNKGKEKIYSAERFLIATGERP-RY 187 (519)
T ss_dssp CCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCCCEEEEEEEEECCCEEE-CC
T ss_pred ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEeeCCEEEEEcCCCCEEEEECCEEEEECCCCc-CC
Confidence 111111111 122344556888876654321 1222222 247999999999988 47
Q ss_pred CCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCC
Q psy4525 117 LNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRI 196 (388)
Q Consensus 117 ~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (388)
|++||.+. .+++..++. .....+++++|||+|++|+|+|..|. +.+
T Consensus 188 p~i~G~~~-~~~t~~~~~------------~l~~~~~~vvVIGgG~ig~E~A~~l~--------------------~~G- 233 (519)
T 3qfa_A 188 LGIPGDKE-YCISSDDLF------------SLPYCPGKTLVVGASYVALECAGFLA--------------------GIG- 233 (519)
T ss_dssp CCCTTHHH-HCBCHHHHT------------TCSSCCCSEEEECCSHHHHHHHHHHH--------------------HTT-
T ss_pred CCCCCccC-ceEcHHHHh------------hhhhcCCeEEEECCcHHHHHHHHHHH--------------------HcC-
Confidence 78888531 233333332 11223578999999999999999876 233
Q ss_pred cEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEE
Q psy4525 197 KSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPI 276 (388)
Q Consensus 197 ~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 276 (388)
.+||++.|. .+...+. +++. +.+.+.+. +.||+++
T Consensus 234 ~~Vtlv~~~-~~l~~~d-~~~~-------------------------------~~~~~~l~------------~~GV~v~ 268 (519)
T 3qfa_A 234 LDVTVMVRS-ILLRGFD-QDMA-------------------------------NKIGEHME------------EHGIKFI 268 (519)
T ss_dssp CCEEEEESS-CSSTTSC-HHHH-------------------------------HHHHHHHH------------HTTCEEE
T ss_pred CeEEEEecc-cccccCC-HHHH-------------------------------HHHHHHHH------------HCCCEEE
Confidence 469999985 3322221 2221 22222222 5799999
Q ss_pred ecCcceeeeeCCCC--ceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCccc-CCCccccCCCC
Q psy4525 277 FLRSPTEFKLNDNG--AITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFN-EKSCTVIPKEG 345 (388)
Q Consensus 277 ~~~~~~~i~~~~~~--~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~-~~~gi~l~~~~ 345 (388)
++..++++....++ ....+.+... ..+...++++|.||+|+|++||+.. .+++++ .++++.+|+..
T Consensus 269 ~~~~v~~v~~~~~~~~~~~~v~~~~~---~g~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~~~G~I~Vd~~~ 342 (519)
T 3qfa_A 269 RQFVPIKVEQIEAGTPGRLRVVAQST---NSEEIIEGEYNTVMLAIGRDACTRKIGLETVGVKINEKTGKIPVTDEE 342 (519)
T ss_dssp ESEEEEEEEEEECCTTCEEEEEEEES---SSSCEEEEEESEEEECSCEEESCSSSCSTTTTCCCCTTTCCBCCCTTS
T ss_pred eCCeEEEEEEccCCCCceEEEEEEEC---CCcEEEEEECCEEEEecCCcccCCCCChhhcCcEEcCCCCeEeeCCCC
Confidence 99888777643221 1122322110 0112246899999999999999742 345666 34567777654
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=208.64 Aligned_cols=248 Identities=14% Similarity=0.217 Sum_probs=159.2
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC-------C--CCCCce-eeCCCCC-------------------
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL-------P--VPFGLV-RYGVAPD------------------- 61 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~-------~--~~gg~~-~~g~~p~------------------- 61 (388)
...+||+||||||||+++|..|++ .|.+|+|||+. . .+||.| ++||.|.
T Consensus 7 ~~~~DvvVIGgG~aGl~aA~~la~--~G~~V~liEk~~~~~~~~~~~~~GG~c~~~gciPsk~l~~~~~~~~~~~~~~~~ 84 (483)
T 3dgh_A 7 SYDYDLIVIGGGSAGLACAKEAVL--NGARVACLDFVKPTPTLGTKWGVGGTCVNVGCIPKKLMHQASLLGEAVHEAAAY 84 (483)
T ss_dssp CCSEEEEEECCSHHHHHHHHHHHH--TTCCEEEECCCCCCTTTTCCCCSSCHHHHHSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCEEEECcCHHHHHHHHHHHH--CCCEEEEEEeccccccccccCCcCCeecccCchhhHHHHHHHHHHHHHHHHHhc
Confidence 346899999999999999999999 89999999942 1 378877 3343321
Q ss_pred --------CcchhHHHHH-----------HHHhhcCCCcEEEceEEEEE-----Eeeeccc--ccccCEEEEeeCCCCCC
Q psy4525 62 --------HPEVKNVINT-----------FTKTGDNPRVNFYGNICLGQ-----DISLGDL--TNAYHAVVLTYGADNDK 115 (388)
Q Consensus 62 --------~~~~~~~~~~-----------~~~~~~~~~i~~~~~~~v~~-----~~~~~~~--~~~yd~lvlAtG~~~~~ 115 (388)
......+..+ +...+...+++++.+..... .+...+. ...||+||||||+.+ +
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~a~~~~~~~v~v~~~~g~~~~~~d~lviATGs~p-~ 163 (483)
T 3dgh_A 85 GWNVDDKIKPDWHKLVQSVQNHIKSVNWVTRVDLRDKKVEYINGLGSFVDSHTLLAKLKSGERTITAQTFVIAVGGRP-R 163 (483)
T ss_dssp TBCCCCCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEECCCEEE-C
T ss_pred CcccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeEEEEccCCEEEEEeCCCeEEEEcCEEEEeCCCCc-C
Confidence 1112222221 12234556788776544321 1223333 248999999999987 4
Q ss_pred CCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCC
Q psy4525 116 KLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSR 195 (388)
Q Consensus 116 ~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~ 195 (388)
.|++||.+. .+++..++. .....+++++|||+|++|+|+|..|+ +.+
T Consensus 164 ~p~i~G~~~-~~~~~~~~~------------~~~~~~~~vvViGgG~~g~E~A~~l~--------------------~~g 210 (483)
T 3dgh_A 164 YPDIPGAVE-YGITSDDLF------------SLDREPGKTLVVGAGYIGLECAGFLK--------------------GLG 210 (483)
T ss_dssp CCSSTTHHH-HCBCHHHHT------------TCSSCCCEEEEECCSHHHHHHHHHHH--------------------HTT
T ss_pred CCCCCCccc-ccCcHHHHh------------hhhhcCCcEEEECCCHHHHHHHHHHH--------------------HcC
Confidence 778888642 223333332 11224689999999999999999876 233
Q ss_pred CcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEE
Q psy4525 196 IKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRP 275 (388)
Q Consensus 196 ~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 275 (388)
.+|+++.|. .+...+ ++++. +.+.+.+. +.||++
T Consensus 211 -~~Vtlv~~~-~~l~~~-d~~~~-------------------------------~~l~~~l~------------~~Gv~i 244 (483)
T 3dgh_A 211 -YEPTVMVRS-IVLRGF-DQQMA-------------------------------ELVAASME------------ERGIPF 244 (483)
T ss_dssp -CEEEEEESS-CSSTTS-CHHHH-------------------------------HHHHHHHH------------HTTCCE
T ss_pred -CEEEEEeCC-CCCccc-CHHHH-------------------------------HHHHHHHH------------hCCCEE
Confidence 579999885 332222 12211 12222222 579999
Q ss_pred EecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCccccCCCC
Q psy4525 276 IFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 276 ~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l~~~~ 345 (388)
++++.++++..++++.+ .+.+.++. +++..++++|.||+|+|++|++.. .++++++ +++.+|+..
T Consensus 245 ~~~~~v~~i~~~~~~~~-~v~~~~~~---~~~~~~~~~D~vi~a~G~~p~~~~l~l~~~gl~~~~-G~i~vd~~~ 314 (483)
T 3dgh_A 245 LRKTVPLSVEKQDDGKL-LVKYKNVE---TGEESEDVYDTVLWAIGRKGLVDDLNLPNAGVTVQK-DKIPVDSQE 314 (483)
T ss_dssp EETEEEEEEEECTTSCE-EEEEEETT---TCCEEEEEESEEEECSCEEECCGGGTGGGTTCCCBT-TBBCCCTTC
T ss_pred EeCCEEEEEEEcCCCcE-EEEEecCC---CCceeEEEcCEEEECcccccCcCcCCchhcCccccC-CEEEECcCC
Confidence 99999999987544443 35554321 244568999999999999999742 4567776 678777654
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.9e-24 Score=208.02 Aligned_cols=251 Identities=17% Similarity=0.247 Sum_probs=161.4
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCC----CCCcchhHHHHHHHHhhcCCCcEEEceEEE
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVA----PDHPEVKNVINTFTKTGDNPRVNFYGNICL 89 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~----p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v 89 (388)
++|+|||||+||+++|..|++..++.+|+|||+++.++ .+.++.. ......+++.....+.+++.+++++.+..+
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v 79 (447)
T 1nhp_A 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS-FLSAGMQLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTEI 79 (447)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS-BCGGGHHHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEEE
T ss_pred CeEEEECCCHHHHHHHHHHHHhCcCCeEEEEECCCccC-cccccchhhhcCccCCHHHhhcCCHHHHHHCCCEEEECCEE
Confidence 48999999999999999999954589999999987654 2221110 000112222222233444568888766665
Q ss_pred E-E-----Eeeecc---cc---cccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEE
Q psy4525 90 G-Q-----DISLGD---LT---NAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATI 157 (388)
Q Consensus 90 ~-~-----~~~~~~---~~---~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvV 157 (388)
. . .+.+.. .+ ..||+||+|||+.+ +.|++||.+.+++++..++...... ........+++++|
T Consensus 80 ~~i~~~~~~v~~~~~~~g~~~~~~~d~lviAtG~~p-~~p~i~G~~~~~v~~~~~~~~~~~l----~~~~~~~~~~~vvI 154 (447)
T 1nhp_A 80 TAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVP-FELDIPGKDLDNIYLMRGRQWAIKL----KQKTVDPEVNNVVV 154 (447)
T ss_dssp EEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEE-CCCCSTTTTSBSEECCCHHHHHHHH----HHHHTCTTCCEEEE
T ss_pred EEEeCCCCEEEEEecCCCceEEEeCCEEEEcCCCCc-CCCCCCCCCCCCeEEECCHHHHHHH----HHHhhhcCCCeEEE
Confidence 2 1 233322 22 47999999999987 5778999877788876655321100 00000114789999
Q ss_pred EcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEeccccccc
Q psy4525 158 LGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCG 237 (388)
Q Consensus 158 IGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~ 237 (388)
||+|++|+|+|..|. +.+ .+|+++.+.+.+...+.++++.
T Consensus 155 iG~G~~g~e~A~~l~--------------------~~g-~~Vtlv~~~~~~l~~~~~~~~~------------------- 194 (447)
T 1nhp_A 155 IGSGYIGIEAAEAFA--------------------KAG-KKVTVIDILDRPLGVYLDKEFT------------------- 194 (447)
T ss_dssp ECCSHHHHHHHHHHH--------------------HTT-CEEEEEESSSSTTTTTCCHHHH-------------------
T ss_pred ECCCHHHHHHHHHHH--------------------HCC-CeEEEEecCcccccccCCHHHH-------------------
Confidence 999999999999775 233 4799999987654322222221
Q ss_pred chhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEE
Q psy4525 238 VHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAF 317 (388)
Q Consensus 238 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi 317 (388)
+.+.+.+. +.||++++++.++++..+ +.+..+.. ++.++++|.||
T Consensus 195 ------------~~l~~~l~------------~~gv~i~~~~~v~~i~~~--~~v~~v~~---------~~~~i~~d~vi 239 (447)
T 1nhp_A 195 ------------DVLTEEME------------ANNITIATGETVERYEGD--GRVQKVVT---------DKNAYDADLVV 239 (447)
T ss_dssp ------------HHHHHHHH------------TTTEEEEESCCEEEEECS--SBCCEEEE---------SSCEEECSEEE
T ss_pred ------------HHHHHHHH------------hCCCEEEcCCEEEEEEcc--CcEEEEEE---------CCCEEECCEEE
Confidence 12222222 579999999999999853 44444432 22479999999
Q ss_pred EccccCCccC--CCCCcccCCCccccCCCC
Q psy4525 318 RSIGYQSRCV--DSDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 318 ~a~G~~p~~~--~~~l~~~~~~gi~l~~~~ 345 (388)
+|+|++|+.. ...++++.++++.+|+..
T Consensus 240 ~a~G~~p~~~~~~~~~~~~~~G~i~Vd~~~ 269 (447)
T 1nhp_A 240 VAVGVRPNTAWLKGTLELHPNGLIKTDEYM 269 (447)
T ss_dssp ECSCEEESCGGGTTTSCBCTTSCBCCCTTC
T ss_pred ECcCCCCChHHHHhhhhhcCCCcEEECccc
Confidence 9999999863 212556555558777653
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-24 Score=212.52 Aligned_cols=248 Identities=13% Similarity=0.117 Sum_probs=157.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcC--------CCCCCCce-eeCCCCC---------------------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEK--------LPVPFGLV-RYGVAPD--------------------- 61 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~--------~~~~gg~~-~~g~~p~--------------------- 61 (388)
..+||+||||||||+++|..|++ .|.+|+|||+ ...+||.| ++||.|.
T Consensus 5 ~~~DvvVIG~G~aGl~aA~~la~--~G~~V~liEk~~~~~~~~~~~~GGtc~~~gciPsk~l~~~~~~~~~~~~~~~~g~ 82 (488)
T 3dgz_A 5 QSFDLLVIGGGSGGLACAKEAAQ--LGKKVAVADYVEPSPRGTKWGLGGTCVNVGCIPKKLMHQAALLGGMIRDAHHYGW 82 (488)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECCCCCCTTSCCCCTTCHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcCCEEEECCCHHHHHHHHHHHh--CCCeEEEEEecccccccccCCcCCeecccCCcccHHHHHHHHHHHHHHHHHhcCc
Confidence 45899999999999999999999 8999999997 45688876 3343321
Q ss_pred ------CcchhHHHH-----------HHHHhhcCCCcEEEceEEEE-----EEeeeccc---ccccCEEEEeeCCCCCCC
Q psy4525 62 ------HPEVKNVIN-----------TFTKTGDNPRVNFYGNICLG-----QDISLGDL---TNAYHAVVLTYGADNDKK 116 (388)
Q Consensus 62 ------~~~~~~~~~-----------~~~~~~~~~~i~~~~~~~v~-----~~~~~~~~---~~~yd~lvlAtG~~~~~~ 116 (388)
......+.. .+...+.+.+++++.+.... ..+...+. ...||+||||||+.+ +.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~g~~~~~~~~~v~v~~~~g~~~~~~~d~lViATGs~p-~~ 161 (488)
T 3dgz_A 83 EVAQPVQHNWKTMAEAVQNHVKSLNWGHRVQLQDRKVKYFNIKASFVDEHTVRGVDKGGKATLLSAEHIVIATGGRP-RY 161 (488)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCEEEESSSSEEEEECTTSCEEEEEEEEEEECCCEEE-CC
T ss_pred ccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEEEEEEccCCeEEEEeCCCceEEEECCEEEEcCCCCC-CC
Confidence 111111111 12234455688887655432 12222222 348999999999988 46
Q ss_pred CC-CCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCC
Q psy4525 117 LN-IPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSR 195 (388)
Q Consensus 117 ~~-i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~ 195 (388)
|+ +||.+. .+++..++. .....+++++|||+|++|+|+|..|. +.+
T Consensus 162 p~~i~G~~~-~~~~~~~~~------------~~~~~~~~vvViGgG~ig~E~A~~l~--------------------~~g 208 (488)
T 3dgz_A 162 PTQVKGALE-YGITSDDIF------------WLKESPGKTLVVGASYVALECAGFLT--------------------GIG 208 (488)
T ss_dssp CSSCBTHHH-HCBCHHHHT------------TCSSCCCSEEEECCSHHHHHHHHHHH--------------------HTT
T ss_pred CCCCCCccc-ccCcHHHHH------------hhhhcCCeEEEECCCHHHHHHHHHHH--------------------HcC
Confidence 66 888632 223333332 11224678999999999999999876 233
Q ss_pred CcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEE
Q psy4525 196 IKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRP 275 (388)
Q Consensus 196 ~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 275 (388)
.+|+++.|.. +...+ ++++. +.+.+.+. +.||++
T Consensus 209 -~~Vtlv~~~~-~l~~~-d~~~~-------------------------------~~l~~~l~------------~~gv~~ 242 (488)
T 3dgz_A 209 -LDTTVMMRSI-PLRGF-DQQMS-------------------------------SLVTEHME------------SHGTQF 242 (488)
T ss_dssp -CCEEEEESSC-SSTTS-CHHHH-------------------------------HHHHHHHH------------HTTCEE
T ss_pred -CceEEEEcCc-ccccC-CHHHH-------------------------------HHHHHHHH------------HCCCEE
Confidence 4799999864 22221 12211 22222322 579999
Q ss_pred EecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCccc-CCCccccCCCC
Q psy4525 276 IFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFN-EKSCTVIPKEG 345 (388)
Q Consensus 276 ~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~-~~~gi~l~~~~ 345 (388)
++++.+.++...+++.+ .+.+.+. ..++..+++||.||+|+|++||+.. .++.++ +++++.+|+..
T Consensus 243 ~~~~~v~~i~~~~~~~~-~v~~~~~---~~g~~~~~~~D~vi~a~G~~p~~~~l~l~~~g~~~~~~~G~i~vd~~~ 314 (488)
T 3dgz_A 243 LKGCVPSHIKKLPTNQL-QVTWEDH---ASGKEDTGTFDTVLWAIGRVPETRTLNLEKAGISTNPKNQKIIVDAQE 314 (488)
T ss_dssp EETEEEEEEEECTTSCE-EEEEEET---TTTEEEEEEESEEEECSCEEESCGGGTGGGGTCCBCSSSCCBCCCTTS
T ss_pred EeCCEEEEEEEcCCCcE-EEEEEeC---CCCeeEEEECCEEEEcccCCcccCcCCccccCcEecCCCCeEeECCCC
Confidence 99999999986433433 3443221 0133346899999999999999742 356676 56668777654
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.4e-23 Score=203.46 Aligned_cols=163 Identities=18% Similarity=0.221 Sum_probs=114.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC--cEEEEcCCCCCCCceeeCCC-------C----------------------
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQS--TVDIYEKLPVPFGLVRYGVA-------P---------------------- 60 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~--~v~lie~~~~~gg~~~~g~~-------p---------------------- 60 (388)
..++|+||||||+|+++|..|++ .|. +|+|||+.+.+||.|.+... |
T Consensus 5 ~~~dV~IIGaG~aGl~aA~~L~~--~G~~~~V~v~E~~~~~GG~~~~~~~~~~~~~ip~~~~~~~~~~~~~g~~~~~~~~ 82 (447)
T 2gv8_A 5 TIRKIAIIGAGPSGLVTAKALLA--EKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPS 82 (447)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHT--TTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCC
T ss_pred CCCEEEEECccHHHHHHHHHHHh--cCCCCCeEEEecCCCCCCeecCCCCCCcccccccccccccccccccccccCCccC
Confidence 35799999999999999999999 888 99999999889998865310 0
Q ss_pred ---------------------------CCcchhHHHHHHHHhhcCCCcEEEceEEEEE--------Eeeecc---c----
Q psy4525 61 ---------------------------DHPEVKNVINTFTKTGDNPRVNFYGNICLGQ--------DISLGD---L---- 98 (388)
Q Consensus 61 ---------------------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~--------~~~~~~---~---- 98 (388)
.+....++.+++.+++++++..+++++.|.. .+++.+ +
T Consensus 83 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~i~~~t~V~~v~~~~~~~~V~~~~~~~G~~~~ 162 (447)
T 2gv8_A 83 PLYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPIS 162 (447)
T ss_dssp CCCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEE
T ss_pred chhhhhccCCCHHHhccCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCeEEeCCEEEEEEeCCCeEEEEEeecCCCCeeE
Confidence 0111335666677777666666777766532 233332 2
Q ss_pred ccccCEEEEeeCCCC-CCCCCCCCCCC------CCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHh
Q psy4525 99 TNAYHAVVLTYGADN-DKKLNIPGEDG------KNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARIL 171 (388)
Q Consensus 99 ~~~yd~lvlAtG~~~-~~~~~i~g~~~------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L 171 (388)
...||+||+|||+.. ++.|++||.+. ..++++.++.. ...+.+++|+|||+|++|+|+|..|
T Consensus 163 ~~~~d~VVvAtG~~s~p~~p~i~G~~~~~~~~~g~v~~~~~~~~-----------~~~~~~k~VvVvG~G~sg~e~A~~l 231 (447)
T 2gv8_A 163 KDIFDAVSICNGHYEVPYIPNIKGLDEYAKAVPGSVLHSSLFRE-----------PELFVGESVLVVGGASSANDLVRHL 231 (447)
T ss_dssp EEEESEEEECCCSSSSBCBCCCBTHHHHHHHSTTSEEEGGGCCC-----------GGGGTTCCEEEECSSHHHHHHHHHH
T ss_pred EEEeCEEEECCCCCCCCCCCCCCChhhhhccCCccEEEecccCC-----------hhhcCCCEEEEEccCcCHHHHHHHH
Confidence 347999999999833 24667888541 23565555431 1123589999999999999999988
Q ss_pred ccCCcccccccCchhHHHhhhcCCCcE-EEEEeecCcc
Q psy4525 172 LSPVDQLKSTDITEHSLEKLSTSRIKS-VNLVGRRGAL 208 (388)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-V~~i~r~~~~ 208 (388)
+ ..+++ |+++.|++.+
T Consensus 232 ~---------------------~~~~~~V~l~~r~~~~ 248 (447)
T 2gv8_A 232 T---------------------PVAKHPIYQSLLGGGD 248 (447)
T ss_dssp T---------------------TTSCSSEEEECTTCCS
T ss_pred H---------------------HHhCCcEEEEeCCCCc
Confidence 7 22346 9999988643
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=99.91 E-value=3e-23 Score=193.51 Aligned_cols=251 Identities=13% Similarity=0.141 Sum_probs=157.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceee---CCC-CCCcchhHHHHHHHHhhcCCC-cEEEc
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY---GVA-PDHPEVKNVINTFTKTGDNPR-VNFYG 85 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~---g~~-p~~~~~~~~~~~~~~~~~~~~-i~~~~ 85 (388)
++.+||+||||||||++||.++++ .|.+|+|||+. .+||.+.. ++. +......++.....+.+.+++ +.+..
T Consensus 4 M~~yDVvIIGaGpAGlsAA~~lar--~g~~v~lie~~-~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (304)
T 4fk1_A 4 MKYIDCAVIGAGPAGLNASLVLGR--ARKQIALFDNN-TNRNRVTQNSHGFITRDGIKPEEFKEIGLNEVMKYPSVHYYE 80 (304)
T ss_dssp --CEEEEEECCSHHHHHHHHHHHH--TTCCEEEEECS-CCGGGGSSCBCCSTTCTTBCHHHHHHHHHHHHTTSTTEEEEE
T ss_pred CCCcCEEEECCCHHHHHHHHHHHH--CCCCEEEEeCC-CCCCeeeeecCCccCCCCCCHHHHHHHHHHHHHhcCCEEEEe
Confidence 556899999999999999999999 89999999987 45665522 221 112245666666666666654 55554
Q ss_pred eEEEEE--------Eeeeccc-ccccCEEEEeeCCCCCCCCCCCCCCC---CCeeecccccccccCCCCccccCcCCCCC
Q psy4525 86 NICLGQ--------DISLGDL-TNAYHAVVLTYGADNDKKLNIPGEDG---KNIISARSFVGWYNGLPEDASLDLSLDCE 153 (388)
Q Consensus 86 ~~~v~~--------~~~~~~~-~~~yd~lvlAtG~~~~~~~~i~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (388)
...+.. .+...+. ...||+||||||+.+ +.|++||.+. .++++..... ....+++
T Consensus 81 ~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATGs~p-~~p~i~G~~~~~~~~v~~~~~~~------------~~~~~~~ 147 (304)
T 4fk1_A 81 KTVVMITKQSTGLFEIVTKDHTKYLAERVLLATGMQE-EFPSIPNVREYYGKSLFSCPYCD------------GWELKDQ 147 (304)
T ss_dssp CCEEEEEECTTSCEEEEETTCCEEEEEEEEECCCCEE-ECCSCTTHHHHBTTTEESCHHHH------------SGGGTTS
T ss_pred eEEEEeeecCCCcEEEEECCCCEEEeCEEEEccCCcc-ccccccCccccccceeeeccccc------------hhHhcCC
Confidence 443322 1223333 337999999999987 6888998541 2233222211 2234567
Q ss_pred eEEEEcCChH-HHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecc
Q psy4525 154 EATILGQGNV-AMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRN 232 (388)
Q Consensus 154 ~vvVIGgG~s-g~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~ 232 (388)
+++|||||.. ++|+|..+. ....+|+++.|...+..
T Consensus 148 ~~~VIggG~~~~~e~a~~~~---------------------~~~~~v~i~~~~~~~~~---------------------- 184 (304)
T 4fk1_A 148 PLIIISENEDHTLHMTKLVY---------------------NWSTDLVIATNGNELSQ---------------------- 184 (304)
T ss_dssp CEEEECCSHHHHHHHHHHHT---------------------TTCSCEEEECSSCCCCH----------------------
T ss_pred ceeeecCCCchhhhHHHHHH---------------------hCCceEEEEeccccchh----------------------
Confidence 8899988876 567776554 34467888877654311
Q ss_pred cccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEe
Q psy4525 233 EQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIP 312 (388)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~ 312 (388)
.+.+.+. .+++.++.. .++.+..+ ++.+..+++ .++++++
T Consensus 185 ------------------~~~~~l~------------~~g~~~~~~-~v~~~~~~-~~~~~~v~~--------~~g~~i~ 224 (304)
T 4fk1_A 185 ------------------TIMDELS------------NKNIPVITE-SIRTLQGE-GGYLKKVEF--------HSGLRIE 224 (304)
T ss_dssp ------------------HHHHHHH------------TTTCCEECS-CEEEEESG-GGCCCEEEE--------TTSCEEC
T ss_pred ------------------hhhhhhh------------ccceeEeee-eEEEeecC-CCeeeeeec--------cccceee
Confidence 1111121 456666654 35666543 456666764 4556889
Q ss_pred cceEEEccccCCccC---CCCCcccCCCccccCCCCCCeecchhhHHhHHHH
Q psy4525 313 SGIAFRSIGYQSRCV---DSDIPFNEKSCTVIPKEGVPVVTWEGWKAIDKEE 361 (388)
Q Consensus 313 ~D~Vi~a~G~~p~~~---~~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~~~ 361 (388)
+|.+|+++|.+|+.. ..++++++++.|.+|+.....+ .+.|...|+..
T Consensus 225 ~~~~vi~~g~~~~~~~~~~~g~~~~~~G~I~vd~~~~Ts~-p~IyA~GDv~~ 275 (304)
T 4fk1_A 225 RAGGFIVPTFFRPNQFIEQLGCELQSNGTFVIDDFGRTSE-KNIYLAGETTT 275 (304)
T ss_dssp CCEEEECCEEECSSCHHHHTTCCCCTTSSSCSSTTCBCSS-TTEEECSHHHH
T ss_pred ecceeeeeccccCChhhhhcCeEECCCCCEEECcCCccCC-CCEEEEeccCC
Confidence 888877776665542 2577788766788888765333 36788888764
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=99.90 E-value=5.1e-25 Score=210.90 Aligned_cols=238 Identities=18% Similarity=0.202 Sum_probs=151.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC---ceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG---LVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNIC 88 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg---~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 88 (388)
...+++||||||||++||..|++ .+ +|+|||+++..+. .+.+.. ......+++.....+++++.+++++.++.
T Consensus 7 ~~~~vvIIGgG~AGl~aA~~l~~--~g-~V~lie~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~~~~~~~~~v~~~~g~~ 82 (367)
T 1xhc_A 7 HGSKVVIVGNGPGGFELAKQLSQ--TY-EVTVIDKEPVPYYSKPMLSHYI-AGFIPRNRLFPYSLDWYRKRGIEIRLAEE 82 (367)
T ss_dssp --CEEEEECCSHHHHHHHHHHTT--TS-EEEEECSSSSCCCCSTTHHHHH-TTSSCGGGGCSSCHHHHHHHTEEEECSCC
T ss_pred CCCcEEEECCcHHHHHHHHHHhh--cC-CEEEEECCCCCccccchhHHHH-hCCCCHHHhccCCHHHHHhCCcEEEECCE
Confidence 35699999999999999999998 78 9999999875421 111101 11112222222233444556888887754
Q ss_pred EE-EE-----eeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCCh
Q psy4525 89 LG-QD-----ISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGN 162 (388)
Q Consensus 89 v~-~~-----~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~ 162 (388)
+. .+ ++.+.....||+||||||+.+ +.|++|| .+++++..++..... .. .....+++++|||+|+
T Consensus 83 v~~id~~~~~V~~~g~~~~~d~lViATGs~p-~~p~i~G--~~~v~~~~~~~~~~~----l~--~~~~~~~~vvViGgG~ 153 (367)
T 1xhc_A 83 AKLIDRGRKVVITEKGEVPYDTLVLATGARA-REPQIKG--KEYLLTLRTIFDADR----IK--ESIENSGEAIIIGGGF 153 (367)
T ss_dssp EEEEETTTTEEEESSCEEECSEEEECCCEEE-CCCCSBT--GGGEECCCSHHHHHH----HH--HHHHHHSEEEEEECSH
T ss_pred EEEEECCCCEEEECCcEEECCEEEECCCCCC-CCCCCCC--cCCEEEEcCHHHHHH----HH--HHhhcCCcEEEECCCH
Confidence 32 21 332222348999999999988 5778888 456766544432110 00 0001258999999999
Q ss_pred HHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhh
Q psy4525 163 VAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEAS 242 (388)
Q Consensus 163 sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~ 242 (388)
+|+|+|..|. +.+ .+|+++.|.+.+.. + ++++.
T Consensus 154 ~g~E~A~~l~--------------------~~g-~~Vtlv~~~~~~l~-~-~~~~~------------------------ 186 (367)
T 1xhc_A 154 IGLELAGNLA--------------------EAG-YHVKLIHRGAMFLG-L-DEELS------------------------ 186 (367)
T ss_dssp HHHHHHHHHH--------------------HTT-CEEEEECSSSCCTT-C-CHHHH------------------------
T ss_pred HHHHHHHHHH--------------------hCC-CEEEEEeCCCeecc-C-CHHHH------------------------
Confidence 9999999876 233 47999999876533 2 12221
Q ss_pred ccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEcccc
Q psy4525 243 ATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 243 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
+.+.+.+. +.||++++++.++++.. . .+.+ .+++ ++||.||+|+|+
T Consensus 187 -------~~l~~~l~------------~~gV~i~~~~~v~~i~~---~---~v~~--------~~g~-i~~D~vi~a~G~ 232 (367)
T 1xhc_A 187 -------NMIKDMLE------------ETGVKFFLNSELLEANE---E---GVLT--------NSGF-IEGKVKICAIGI 232 (367)
T ss_dssp -------HHHHHHHH------------HTTEEEECSCCEEEECS---S---EEEE--------TTEE-EECSCEEEECCE
T ss_pred -------HHHHHHHH------------HCCCEEEcCCEEEEEEe---e---EEEE--------CCCE-EEcCEEEECcCC
Confidence 12222222 57999999999998861 1 2333 3455 999999999999
Q ss_pred CCccC---CCCCcccCCCccccCCCC
Q psy4525 323 QSRCV---DSDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 323 ~p~~~---~~~l~~~~~~gi~l~~~~ 345 (388)
+||+. ..+++.+ +|+.+|+..
T Consensus 233 ~p~~~ll~~~gl~~~--~gi~Vd~~~ 256 (367)
T 1xhc_A 233 VPNVDLARRSGIHTG--RGILIDDNF 256 (367)
T ss_dssp EECCHHHHHTTCCBS--SSEECCTTS
T ss_pred CcCHHHHHhCCCCCC--CCEEECCCc
Confidence 99972 1455554 578887643
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-23 Score=206.28 Aligned_cols=301 Identities=11% Similarity=-0.014 Sum_probs=167.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCC-----CcEEEEcCCCCCCCcee---eCCC--------------CC---------
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQ-----STVDIYEKLPVPFGLVR---YGVA--------------PD--------- 61 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g-----~~v~lie~~~~~gg~~~---~g~~--------------p~--------- 61 (388)
.++|+||||||||+++|..|++ .| .+|+|||+.+.+|.... .+.. |.
T Consensus 30 ~~dVvIIGaG~aGl~aA~~L~~--~g~~~~~~~v~liE~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~~~~~l 107 (463)
T 3s5w_A 30 VHDLIGVGFGPSNIALAIALQE--RAQAQGALEVLFLDKQGDYRWHGNTLVSQSELQISFLKDLVSLRNPTSPYSFVNYL 107 (463)
T ss_dssp EESEEEECCSHHHHHHHHHHHH--HHHHHCCCCEEEEESCSSCCSSGGGCCSSCBCSSCTTSSSSTTTCTTCTTSHHHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHh--cccccCcccEEEEecCCCCCCcCCCCCCCCcCCcchhhccccccCCCCCCChhHhh
Confidence 4599999999999999999999 67 99999999987662110 0000 10
Q ss_pred ---------------CcchhHHHHHHHHhhcCCCcEEEceEEEEE-------------Eeeeccc-----ccccCEEEEe
Q psy4525 62 ---------------HPEVKNVINTFTKTGDNPRVNFYGNICLGQ-------------DISLGDL-----TNAYHAVVLT 108 (388)
Q Consensus 62 ---------------~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~-------------~~~~~~~-----~~~yd~lvlA 108 (388)
++...++..++..+++++++.+++++.|.. .+...+. ...||+||+|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~d~lVlA 187 (463)
T 3s5w_A 108 HKHDRLVDFINLGTFYPCRMEFNDYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTTRALVVS 187 (463)
T ss_dssp HHTTCHHHHHHHCCSCCBHHHHHHHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEESEEEEC
T ss_pred hhcCceeecccccCCCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEeCEEEEC
Confidence 112345666677777788887877765421 1222222 3479999999
Q ss_pred eCCCCCCCCC-CCCCCCC-CeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchh
Q psy4525 109 YGADNDKKLN-IPGEDGK-NIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEH 186 (388)
Q Consensus 109 tG~~~~~~~~-i~g~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~ 186 (388)
||+.+ +.|+ +++.... .+++..++......+. .....+++|+|||+|++|+|+|..|+
T Consensus 188 tG~~p-~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~vvVvGgG~sg~e~a~~l~-------------- 247 (463)
T 3s5w_A 188 PGGTP-RIPQVFRALKGDGRVFHHSQYLEHMAKQP-----CSSGKPMKIAIIGGGQSAAEAFIDLN-------------- 247 (463)
T ss_dssp CCCEE-CCCGGGGGGTTCTTEEEGGGHHHHHCC------------CEEEEEECCSHHHHHHHHHHH--------------
T ss_pred CCCCC-CCcchhhhcCCCCcEEECHHHHhhHHHhh-----hcccCCCeEEEECCCHhHHHHHHHHH--------------
Confidence 99966 3443 3333333 5677766654322110 01114789999999999999999886
Q ss_pred HHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhcccc-chhhHHHHHHHh-------
Q psy4525 187 SLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLA-RPRKRLTELILK------- 258 (388)
Q Consensus 187 ~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~------- 258 (388)
...+..+|+++.|++.+......+...++. .++..+. +..++ ..+.++...+..
T Consensus 248 -----~~~~~~~Vt~v~r~~~~~p~~~~~~~~~~~---------~p~~~~~----~~~l~~~~~~~~~~~~~~~~~~~~~ 309 (463)
T 3s5w_A 248 -----DSYPSVQADMILRASALKPADDSPFVNEVF---------APKFTDL----IYSREHAERERLLREYHNTNYSVVD 309 (463)
T ss_dssp -----HHCTTEEEEEECSSSSCCBCCCCHHHHGGG---------SHHHHHH----HHHSCHHHHHHHHHHTGGGTSSCBC
T ss_pred -----hcCCCCeEEEEEeCCCCcCccCCccchhcc---------ChhHHHH----HhcCCHHHHHHHHHHhhccCCCcCC
Confidence 112346899999998764432222221110 1110000 00111 111111111110
Q ss_pred ---------hCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC-
Q psy4525 259 ---------TSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD- 328 (388)
Q Consensus 259 ---------~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~- 328 (388)
..... ......+|++++++.++++..+++ ...+.+.+. .+++.++++||.||+|||++|+...
T Consensus 310 ~~~~~~~~~~l~~~--~~~~~~~v~i~~~~~v~~v~~~~~--~~~v~~~~~---~~g~~~~~~~D~Vv~AtG~~p~~~~~ 382 (463)
T 3s5w_A 310 TDLIERIYGVFYRQ--KVSGIPRHAFRCMTTVERATATAQ--GIELALRDA---GSGELSVETYDAVILATGYERQLHRQ 382 (463)
T ss_dssp HHHHHHHHHHHHHH--HHHCCCCSEEETTEEEEEEEEETT--EEEEEEEET---TTCCEEEEEESEEEECCCEECCC-CT
T ss_pred HHHHHHHHHHHHHH--HhcCCCCeEEEeCCEEEEEEecCC--EEEEEEEEc---CCCCeEEEECCEEEEeeCCCCCCccc
Confidence 00000 001136899999999999986432 234444321 1345567999999999999999322
Q ss_pred --CCCcccCCCccccCCCCCCeec----chhhHHhHHHH
Q psy4525 329 --SDIPFNEKSCTVIPKEGVPVVT----WEGWKAIDKEE 361 (388)
Q Consensus 329 --~~l~~~~~~gi~l~~~~~~~~~----~~~w~~~~~~~ 361 (388)
.++.... +++.+|.......+ ...|...|+..
T Consensus 383 ~l~~l~~~~-g~i~v~~~~~~~~~~~~~~~Ifa~G~~~~ 420 (463)
T 3s5w_A 383 LLEPLAEYL-GDHEIGRDYRLQTDERCKVAIYAQGFSQA 420 (463)
T ss_dssp TTGGGGGGB-C--CCCTTSBCCBCTTBCSEEEESSCCHH
T ss_pred hhHHHHHHh-CCcccCcccccccCCCCCCeEEEcCCCcc
Confidence 1221111 56777665532221 12555555443
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=3.5e-23 Score=201.02 Aligned_cols=237 Identities=17% Similarity=0.188 Sum_probs=156.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC--cEEEEcCCCCCCCceeeCCCCCCcchhHHHHH------HHHhhcCCCcEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQS--TVDIYEKLPVPFGLVRYGVAPDHPEVKNVINT------FTKTGDNPRVNF 83 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~--~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~------~~~~~~~~~i~~ 83 (388)
..++|+|||||+||+++|..|++ .+. +|++||+++.++ |.. |. ..+.+... +...+.+.++++
T Consensus 6 ~~~~vvIIG~G~aGl~aA~~l~~--~g~~~~V~lie~~~~~~----~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~v~~ 76 (408)
T 2gqw_A 6 LKAPVVVLGAGLASVSFVAELRQ--AGYQGLITVVGDEAERP----YDR-PP--LSKDFMAHGDAEKIRLDCKRAPEVEW 76 (408)
T ss_dssp CCSSEEEECCSHHHHHHHHHHHH--HTCCSCEEEEESSCSCC----BCS-GG--GGTHHHHHCCGGGSBCCCTTSCSCEE
T ss_pred CCCcEEEECChHHHHHHHHHHHc--cCCCCeEEEEECCCCCc----ccC-CC--CCHHHhCCCchhhhhHHHHHHCCCEE
Confidence 45799999999999999999999 565 699999987643 111 00 00111100 001456678999
Q ss_pred EceEEE-EE-----Eeeeccc-ccccCEEEEeeCCCCCCCCCC-CCCCCCCeeecccccccccCCCCccccCcCCCCCeE
Q psy4525 84 YGNICL-GQ-----DISLGDL-TNAYHAVVLTYGADNDKKLNI-PGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEA 155 (388)
Q Consensus 84 ~~~~~v-~~-----~~~~~~~-~~~yd~lvlAtG~~~~~~~~i-~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v 155 (388)
+.++.+ .. .+++.+. ...||+||+|||+.+ +.+++ ||.+ +++++..+...... .. .....+++|
T Consensus 77 ~~~~~v~~i~~~~~~v~~~~g~~~~~d~lviAtG~~~-~~~~i~~G~~-~~v~~~~~~~~~~~----l~--~~~~~~~~v 148 (408)
T 2gqw_A 77 LLGVTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAP-RALPTLQGAT-MPVHTLRTLEDARR----IQ--AGLRPQSRL 148 (408)
T ss_dssp EETCCEEEEETTTTEEEETTSCEEECSEEEECCCEEE-CCCGGGTTCS-SCEEECCSHHHHHH----HH--TTCCTTCEE
T ss_pred EcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCC-CCCCccCCCC-CcEEEECCHHHHHH----HH--HHhhcCCeE
Confidence 887643 22 2444443 348999999999987 57788 9877 77876554432100 00 112247999
Q ss_pred EEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEeccccc
Q psy4525 156 TILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQL 235 (388)
Q Consensus 156 vVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~ 235 (388)
+|||+|++|+|+|..|. +.+ .+|++++|.+.+.....++++.
T Consensus 149 vViGgG~~g~E~A~~l~--------------------~~g-~~Vtlv~~~~~~l~~~~~~~~~----------------- 190 (408)
T 2gqw_A 149 LIVGGGVIGLELAATAR--------------------TAG-VHVSLVETQPRLMSRAAPATLA----------------- 190 (408)
T ss_dssp EEECCSHHHHHHHHHHH--------------------HTT-CEEEEEESSSSSSTTTSCHHHH-----------------
T ss_pred EEECCCHHHHHHHHHHH--------------------hCC-CEEEEEEeCCcccccccCHHHH-----------------
Confidence 99999999999999876 233 4799999998764432222221
Q ss_pred ccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecce
Q psy4525 236 CGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGI 315 (388)
Q Consensus 236 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~ 315 (388)
+.+.+.+. +.||++++++.++++. + + .+.+ .++++++||.
T Consensus 191 --------------~~l~~~l~------------~~GV~i~~~~~v~~i~-~--~---~v~~--------~~g~~i~~D~ 230 (408)
T 2gqw_A 191 --------------DFVARYHA------------AQGVDLRFERSVTGSV-D--G---VVLL--------DDGTRIAADM 230 (408)
T ss_dssp --------------HHHHHHHH------------HTTCEEEESCCEEEEE-T--T---EEEE--------TTSCEEECSE
T ss_pred --------------HHHHHHHH------------HcCcEEEeCCEEEEEE-C--C---EEEE--------CCCCEEEcCE
Confidence 12222222 5799999999999997 2 2 3443 3446899999
Q ss_pred EEEccccCCccC---CCCCcccCCCccccCCCC
Q psy4525 316 AFRSIGYQSRCV---DSDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 316 Vi~a~G~~p~~~---~~~l~~~~~~gi~l~~~~ 345 (388)
||+|+|++||+. ..+++++ +|+.+|+..
T Consensus 231 vi~a~G~~p~~~l~~~~gl~~~--~gi~Vd~~~ 261 (408)
T 2gqw_A 231 VVVGIGVLANDALARAAGLACD--DGIFVDAYG 261 (408)
T ss_dssp EEECSCEEECCHHHHHHTCCBS--SSEECCTTC
T ss_pred EEECcCCCccHHHHHhCCCCCC--CCEEECCCC
Confidence 999999999963 1355554 468887653
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.8e-23 Score=190.64 Aligned_cols=242 Identities=11% Similarity=0.064 Sum_probs=158.8
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce--eeCCCCC--CcchhHHHHHHHHhhcCC-CcEEEceEE
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV--RYGVAPD--HPEVKNVINTFTKTGDNP-RVNFYGNIC 88 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~--~~g~~p~--~~~~~~~~~~~~~~~~~~-~i~~~~~~~ 88 (388)
++|+||||||||+++|..|++ .+.+|+|||+.+..+..+ .++. |. .....++..++.+.+.++ ++.++....
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~~--~g~~v~lie~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v 79 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLGR--ARKNILLVDAGERRNRFASHSHGF-LGQDGKAPGEIIAEARRQIERYPTIHWVEGRV 79 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHHH--TTCCEEEEECCCCGGGGCSCCCSS-TTCTTCCHHHHHHHHHHHHTTCTTEEEEESCE
T ss_pred CCEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCCcccccchhhcCC-cCCCCCCHHHHHHHHHHHHHhcCCeEEEEeEE
Confidence 689999999999999999999 899999999976544333 2223 22 235677888888888877 787765543
Q ss_pred EEE-------Eeeecccc-cccCEEEEeeCCCCCCCCCCCCCCC---CCeeecccccccccCCCCccccCcCCCCCeEEE
Q psy4525 89 LGQ-------DISLGDLT-NAYHAVVLTYGADNDKKLNIPGEDG---KNIISARSFVGWYNGLPEDASLDLSLDCEEATI 157 (388)
Q Consensus 89 v~~-------~~~~~~~~-~~yd~lvlAtG~~~~~~~~i~g~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvV 157 (388)
... .+...+.. ..||+||+|||+.+ +.+++||.+. .++++.. +. . .....+++++|
T Consensus 80 ~~i~~~~~~~~v~~~~g~~~~~d~vviAtG~~~-~~~~~~g~~~~~~~~~~~~~-~~---------~--~~~~~~~~v~v 146 (297)
T 3fbs_A 80 TDAKGSFGEFIVEIDGGRRETAGRLILAMGVTD-ELPEIAGLRERWGSAVFHCP-YC---------H--GYELDQGKIGV 146 (297)
T ss_dssp EEEEEETTEEEEEETTSCEEEEEEEEECCCCEE-ECCCCBTTGGGBTTTEESCH-HH---------H--TGGGTTCEEEE
T ss_pred EEEEEcCCeEEEEECCCCEEEcCEEEECCCCCC-CCCCCCCchhhcCCeeEEcc-cC---------c--chhhcCCEEEE
Confidence 322 23343433 48999999999987 4677888652 2222221 11 0 22335799999
Q ss_pred EcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEeccccccc
Q psy4525 158 LGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCG 237 (388)
Q Consensus 158 IGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~ 237 (388)
||+|++|+|+|..|. +.+ +|+++.|.... +.
T Consensus 147 vG~G~~~~e~a~~l~--------------------~~g--~v~~v~~~~~~---~~------------------------ 177 (297)
T 3fbs_A 147 IAASPMAIHHALMLP--------------------DWG--ETTFFTNGIVE---PD------------------------ 177 (297)
T ss_dssp ECCSTTHHHHHHHGG--------------------GTS--EEEEECTTTCC---CC------------------------
T ss_pred EecCccHHHHHHHhh--------------------hcC--cEEEEECCCCC---CC------------------------
Confidence 999999999999886 233 79999887541 11
Q ss_pred chhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEE
Q psy4525 238 VHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAF 317 (388)
Q Consensus 238 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi 317 (388)
+.+.+.+. +.||+++. ..++++..+ + .+.+ .+++++++|.||
T Consensus 178 ------------~~~~~~l~------------~~gv~i~~-~~v~~i~~~--~---~v~~--------~~g~~~~~D~vi 219 (297)
T 3fbs_A 178 ------------ADQHALLA------------ARGVRVET-TRIREIAGH--A---DVVL--------ADGRSIALAGLF 219 (297)
T ss_dssp ------------HHHHHHHH------------HTTCEEEC-SCEEEEETT--E---EEEE--------TTSCEEEESEEE
T ss_pred ------------HHHHHHHH------------HCCcEEEc-ceeeeeecC--C---eEEe--------CCCCEEEEEEEE
Confidence 11112222 57899985 888888742 2 4443 345689999999
Q ss_pred EccccCCccCC---CCCcccC--CC-ccccCCCCCCeecchhhHHhHH
Q psy4525 318 RSIGYQSRCVD---SDIPFNE--KS-CTVIPKEGVPVVTWEGWKAIDK 359 (388)
Q Consensus 318 ~a~G~~p~~~~---~~l~~~~--~~-gi~l~~~~~~~~~~~~w~~~~~ 359 (388)
+|+|++|+... .+++++. .+ .+.+|+.... -..+.|...|+
T Consensus 220 ~a~G~~p~~~~~~~~g~~~~~~~~G~~i~vd~~~~t-~~~~vya~GD~ 266 (297)
T 3fbs_A 220 TQPKLRITVDWIEKLGCAVEEGPMGSTIVTDPMKQT-TARGIFACGDV 266 (297)
T ss_dssp ECCEEECCCSCHHHHTCCEEEETTEEEECCCTTCBC-SSTTEEECSGG
T ss_pred EccCcccCchhHHhcCCccccCCCCceEEeCCCCcc-CCCCEEEEeec
Confidence 99999998642 3455553 22 3666665432 12244554444
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.4e-23 Score=196.45 Aligned_cols=161 Identities=12% Similarity=0.156 Sum_probs=114.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCC-------------CC---------CcchhHHHH
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVA-------------PD---------HPEVKNVIN 70 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~-------------p~---------~~~~~~~~~ 70 (388)
.++|+|||||++|+++|..|++ .|++|+|||+.+.+||.|.+... |. +....++..
T Consensus 3 ~~~vvIIG~G~aGl~~A~~l~~--~g~~v~vie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (357)
T 4a9w_A 3 SVDVVVIGGGQSGLSAGYFLRR--SGLSYVILDAEASPGGAWQHAWHSLHLFSPAGWSSIPGWPMPASQGPYPARAEVLA 80 (357)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--SSCCEEEECCSSSSSGGGGGSCTTCBCSSCGGGSCCSSSCCCCCSSSSCBHHHHHH
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCCCCcccCCCCCcEecCchhhhhCCCCCCCCCccCCCCHHHHHH
Confidence 3699999999999999999999 89999999999999988754210 11 112367778
Q ss_pred HHHHhhcCCCcEEEceEEEEE--------E-eeecccccccCEEEEeeCCCC-CCCCCCCCCCC-C-Ceeeccccccccc
Q psy4525 71 TFTKTGDNPRVNFYGNICLGQ--------D-ISLGDLTNAYHAVVLTYGADN-DKKLNIPGEDG-K-NIISARSFVGWYN 138 (388)
Q Consensus 71 ~~~~~~~~~~i~~~~~~~v~~--------~-~~~~~~~~~yd~lvlAtG~~~-~~~~~i~g~~~-~-~v~~~~~~~~~~~ 138 (388)
++.+.+++.+++++.++.+.. . ++..+....||+||+|||+.+ ++.+++||.+. . .+++...+..
T Consensus 81 ~l~~~~~~~~~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~d~vV~AtG~~~~~~~~~~~g~~~~~~~~~~~~~~~~--- 157 (357)
T 4a9w_A 81 YLAQYEQKYALPVLRPIRVQRVSHFGERLRVVARDGRQWLARAVISATGTWGEAYTPEYQGLESFAGIQLHSAHYST--- 157 (357)
T ss_dssp HHHHHHHHTTCCEECSCCEEEEEEETTEEEEEETTSCEEEEEEEEECCCSGGGBCCCCCTTGGGCCSEEEEGGGCCC---
T ss_pred HHHHHHHHcCCEEEcCCEEEEEEECCCcEEEEEeCCCEEEeCEEEECCCCCCCCCCCCCCCccccCCcEEEeccCCC---
Confidence 888888888998888765532 1 333444458999999999633 23567887542 1 2233222221
Q ss_pred CCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcc
Q psy4525 139 GLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGAL 208 (388)
Q Consensus 139 ~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~ 208 (388)
.....+++|+|||+|.+|+|+|..|+ +.+ +|+++.|+...
T Consensus 158 --------~~~~~~~~v~VvG~G~~g~e~a~~l~--------------------~~~--~v~~v~~~~~~ 197 (357)
T 4a9w_A 158 --------PAPFAGMRVAIIGGGNSGAQILAEVS--------------------TVA--ETTWITQHEPA 197 (357)
T ss_dssp --------SGGGTTSEEEEECCSHHHHHHHHHHT--------------------TTS--EEEEECSSCCC
T ss_pred --------hhhcCCCEEEEECCCcCHHHHHHHHH--------------------hhC--CEEEEECCCCe
Confidence 22345799999999999999999886 222 59999998543
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.5e-23 Score=207.83 Aligned_cols=251 Identities=15% Similarity=0.153 Sum_probs=162.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCC----CCCCcchhHHHHHHHHhh-cCCCcEEEceE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGV----APDHPEVKNVINTFTKTG-DNPRVNFYGNI 87 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~----~p~~~~~~~~~~~~~~~~-~~~~i~~~~~~ 87 (388)
+++|+|||||+||+++|..|++...+.+|+|||+++..++. .++. .......+++..+..+.+ +..+++++.+.
T Consensus 36 ~~dvvIIG~G~aGl~aA~~l~~~~~g~~V~lie~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~gv~~~~~~ 114 (480)
T 3cgb_A 36 SMNYVIIGGDAAGMSAAMQIVRNDENANVVTLEKGEIYSYA-QCGLPYVISGAIASTEKLIARNVKTFRDKYGIDAKVRH 114 (480)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSSSCCSBC-GGGHHHHHTTSSSCGGGGBSSCHHHHHHTTCCEEESSE
T ss_pred cceEEEECCCHHHHHHHHHHHhhCcCCcEEEEECCCCCCCC-CCCcchhhcCCcCCHHHhhhcCHHHHHhhcCCEEEeCC
Confidence 46999999999999999999985458999999998765421 1111 001111222222222223 45689988876
Q ss_pred EEEE------Eeeecc---c---ccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeE
Q psy4525 88 CLGQ------DISLGD---L---TNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEA 155 (388)
Q Consensus 88 ~v~~------~~~~~~---~---~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~v 155 (388)
.+.. .+.+.. . ...||+||+|||+.+ +.|++||.+.+++++..++...... ........++++
T Consensus 115 ~v~~i~~~~~~v~v~~~~~g~~~~~~~d~lviAtG~~p-~~p~i~G~~~~~v~~~~~~~~~~~l----~~~~~~~~~~~v 189 (480)
T 3cgb_A 115 EVTKVDTEKKIVYAEHTKTKDVFEFSYDRLLIATGVRP-VMPEWEGRDLQGVHLLKTIPDAERI----LKTLETNKVEDV 189 (480)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEE-CCCCCBTTTSBTEECCSSHHHHHHH----HHHHHSSCCCEE
T ss_pred EEEEEECCCCEEEEEEcCCCceEEEEcCEEEECCCCcc-cCCCCCCccCCCEEEeCCHHHHHHH----HHHhhhcCCCeE
Confidence 5521 233321 2 248999999999987 5778999877778766544321100 000001247999
Q ss_pred EEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEeccccc
Q psy4525 156 TILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQL 235 (388)
Q Consensus 156 vVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~ 235 (388)
+|||+|++|+|+|..|. +.+ .+|+++.|.+.+...+. +++
T Consensus 190 vViGgG~~g~e~A~~l~--------------------~~g-~~Vtlv~~~~~~l~~~~-~~~------------------ 229 (480)
T 3cgb_A 190 TIIGGGAIGLEMAETFV--------------------ELG-KKVRMIERNDHIGTIYD-GDM------------------ 229 (480)
T ss_dssp EEECCHHHHHHHHHHHH--------------------HTT-CEEEEECCGGGTTSSSC-HHH------------------
T ss_pred EEECCCHHHHHHHHHHH--------------------hcC-CeEEEEEeCCchhhcCC-HHH------------------
Confidence 99999999999999776 233 57999999876533221 111
Q ss_pred ccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecce
Q psy4525 236 CGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGI 315 (388)
Q Consensus 236 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~ 315 (388)
.+.+.+.+. +.||++++++.++++..+ +.+..+.. ++ .+++||.
T Consensus 230 -------------~~~l~~~l~------------~~Gv~i~~~~~v~~i~~~--~~v~~v~~--------~~-~~i~~D~ 273 (480)
T 3cgb_A 230 -------------AEYIYKEAD------------KHHIEILTNENVKAFKGN--ERVEAVET--------DK-GTYKADL 273 (480)
T ss_dssp -------------HHHHHHHHH------------HTTCEEECSCCEEEEEES--SBEEEEEE--------TT-EEEECSE
T ss_pred -------------HHHHHHHHH------------HcCcEEEcCCEEEEEEcC--CcEEEEEE--------CC-CEEEcCE
Confidence 122222222 579999999999999853 44544432 22 4799999
Q ss_pred EEEccccCCccC---CCCCcccCCCccccCCCC
Q psy4525 316 AFRSIGYQSRCV---DSDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 316 Vi~a~G~~p~~~---~~~l~~~~~~gi~l~~~~ 345 (388)
||+|+|++|++. ..++++++++++.+|+..
T Consensus 274 vi~a~G~~p~~~~l~~~g~~~~~~G~I~Vd~~~ 306 (480)
T 3cgb_A 274 VLVSVGVKPNTDFLEGTNIRTNHKGAIEVNAYM 306 (480)
T ss_dssp EEECSCEEESCGGGTTSCCCBCTTSCBCCCTTS
T ss_pred EEECcCCCcChHHHHhCCcccCCCCCEEECCCc
Confidence 999999999863 245677766778887653
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.1e-23 Score=196.19 Aligned_cols=226 Identities=17% Similarity=0.151 Sum_probs=143.7
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCCCCCCCceee-----------------CCC------C--------
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKLPVPFGLVRY-----------------GVA------P-------- 60 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~~~~gg~~~~-----------------g~~------p-------- 60 (388)
.++|+|||||+||+++|..|++ .|. +|+|||+.+ +||.|.+ ++. +
T Consensus 4 ~~~vvIIGaG~aGl~aA~~l~~--~g~~~v~lie~~~-~Gg~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 80 (369)
T 3d1c_A 4 HHKVAIIGAGAAGIGMAITLKD--FGITDVIILEKGT-VGHSFKHWPKSTRTITPSFTSNGFGMPDMNAISMDTSPAFTF 80 (369)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCCEEEECSSS-TTHHHHTSCTTCBCSSCCCCCGGGTCCCTTCSSTTCCHHHHH
T ss_pred cCcEEEECcCHHHHHHHHHHHH--cCCCcEEEEecCC-CCCccccCcccccccCcchhcccCCchhhhhccccccccccc
Confidence 4699999999999999999999 898 999999997 7776521 110 0
Q ss_pred --CCcchhHHHHHHHHhhcCCCcEEEceEEEE-E-------EeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeec
Q psy4525 61 --DHPEVKNVINTFTKTGDNPRVNFYGNICLG-Q-------DISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISA 130 (388)
Q Consensus 61 --~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~-~-------~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~ 130 (388)
.+....++..++.+++++.+++++.++.+. . .+...+....||+||+|||+.+. +.+|+ ..+++.
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~~~~d~vVlAtG~~~~--p~ip~---~~~~~~ 155 (369)
T 3d1c_A 81 NEEHISGETYAEYLQVVANHYELNIFENTVVTNISADDAYYTIATTTETYHADYIFVATGDYNF--PKKPF---KYGIHY 155 (369)
T ss_dssp CCSSCBHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSCCEEEEEEEECCCSTTS--BCCCS---SSCEEG
T ss_pred cccCCCHHHHHHHHHHHHHHcCCeEEeCCEEEEEEECCCeEEEEeCCCEEEeCEEEECCCCCCc--cCCCC---Cceech
Confidence 011234566667777777899988876542 1 13333334579999999998762 45665 344544
Q ss_pred ccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccc
Q psy4525 131 RSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQV 210 (388)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~ 210 (388)
.++.. ....++++|+|||+|.+|+|+|..|. +.+ .+|+++.|++.+..
T Consensus 156 ~~~~~-----------~~~~~~~~vvVvG~G~~g~e~a~~l~--------------------~~g-~~V~lv~~~~~~~~ 203 (369)
T 3d1c_A 156 SEIED-----------FDNFNKGQYVVIGGNESGFDAAYQLA--------------------KNG-SDIALYTSTTGLND 203 (369)
T ss_dssp GGCSC-----------GGGSCSSEEEEECCSHHHHHHHHHHH--------------------HTT-CEEEEECC------
T ss_pred hhcCC-----------hhhcCCCEEEEECCCcCHHHHHHHHH--------------------hcC-CeEEEEecCCCCCC
Confidence 43321 11235789999999999999999886 233 57999999876542
Q ss_pred cCCHHHHHHHhcCCCceEEecccccccchhhhccc-cchhhHHHHHHHhhCCCCCCCCCCcee-EEEEecCcceeeeeCC
Q psy4525 211 AFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATL-ARPRKRLTELILKTSNPDESKSNCSKY-FRPIFLRSPTEFKLND 288 (388)
Q Consensus 211 ~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~g-v~~~~~~~~~~i~~~~ 288 (388)
+.. +++. .+ +...+++.+.+. +.| |+++++..+.++..++
T Consensus 204 ~~~-----------------d~~~---------~~~~~~~~~l~~~l~------------~~g~v~~~~~~~v~~i~~~~ 245 (369)
T 3d1c_A 204 PDA-----------------DPSV---------RLSPYTRQRLGNVIK------------QGARIEMNVHYTVKDIDFNN 245 (369)
T ss_dssp ---------------------CTT---------SCCHHHHHHHHHHHH------------TTCCEEEECSCCEEEEEEET
T ss_pred CCC-----------------CCCc---------cCCHHHHHHHHHHHh------------hCCcEEEecCcEEEEEEecC
Confidence 200 0000 00 112233333332 565 9999999999996433
Q ss_pred CCceeEEEEccCccccCCceeEE-ecceEEEccccCCcc
Q psy4525 289 NGAITGINFANQQALVTEDTELI-PSGIAFRSIGYQSRC 326 (388)
Q Consensus 289 ~~~v~~v~~~~~~~~~~~~~~~l-~~D~Vi~a~G~~p~~ 326 (388)
+ ...+.+. +++++ .+|.||+|+|++|+.
T Consensus 246 -~-~~~v~~~--------~g~~~~~~d~vi~a~G~~~~~ 274 (369)
T 3d1c_A 246 -G-QYHISFD--------SGQSVHTPHEPILATGFDATK 274 (369)
T ss_dssp -T-EEEEEES--------SSCCEEESSCCEECCCBCGGG
T ss_pred -C-ceEEEec--------CCeEeccCCceEEeeccCCcc
Confidence 2 2234432 23334 579999999999997
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-24 Score=215.00 Aligned_cols=288 Identities=15% Similarity=0.120 Sum_probs=161.8
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC-CceeeCCCCCCcchhHHHHHHHHh--hcCCCcEEEceE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF-GLVRYGVAPDHPEVKNVINTFTKT--GDNPRVNFYGNI 87 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g-g~~~~g~~p~~~~~~~~~~~~~~~--~~~~~i~~~~~~ 87 (388)
..+++|||||||+||+++|..|++ .+++|+|||+++++. -.+.|.+.-......++...+... ..+.+++|+...
T Consensus 40 ~~KprVVIIGgG~AGl~~A~~L~~--~~~~VtLId~~~~~~~~PlL~~va~G~l~~~~i~~p~~~~~~~~~~~v~~~~~~ 117 (502)
T 4g6h_A 40 SDKPNVLILGSGWGAISFLKHIDT--KKYNVSIISPRSYFLFTPLLPSAPVGTVDEKSIIEPIVNFALKKKGNVTYYEAE 117 (502)
T ss_dssp CSSCEEEEECSSHHHHHHHHHSCT--TTCEEEEEESSSEEECGGGGGGTTTTSSCGGGGEEEHHHHHTTCSSCEEEEEEE
T ss_pred CCCCCEEEECCcHHHHHHHHHhhh--CCCcEEEECCCCCcccccchhHHhhccccHHHhhhhHHHHHHhhcCCeEEEEEE
Confidence 346799999999999999999998 899999999986531 111121111111222222222222 234578887665
Q ss_pred EEEEE-----eeec---------------------ccccccCEEEEeeCCCCCCCCCCCCCCCCCeeeccccc------c
Q psy4525 88 CLGQD-----ISLG---------------------DLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFV------G 135 (388)
Q Consensus 88 ~v~~~-----~~~~---------------------~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~------~ 135 (388)
....+ +++. ..+..||+||||||+.+ +.+++||.+ ++.+...++. .
T Consensus 118 v~~ID~~~k~V~l~~~~~~~~~~~~~~~~~~~~~~~~~i~YD~LViAtGs~~-~~~~ipG~~-e~a~~l~t~~dA~~ir~ 195 (502)
T 4g6h_A 118 ATSINPDRNTVTIKSLSAVSQLYQPENHLGLHQAEPAEIKYDYLISAVGAEP-NTFGIPGVT-DYGHFLKEIPNSLEIRR 195 (502)
T ss_dssp EEEEEGGGTEEEEEEEEEEEECSSSCCCCCCCTTCCEEEECSEEEECCCCEE-CCTTCTTHH-HHCEECSSHHHHHHHHH
T ss_pred EEEEEhhhCEEEEeecccceeecccccccccccCCceEEeCCEEEEcCCccc-ccCCccCcc-cccCCCCCHHHHHHHHH
Confidence 54332 2211 11237999999999998 588899853 1222221111 1
Q ss_pred cccCCCCcccc-C----cCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccc
Q psy4525 136 WYNGLPEDASL-D----LSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQV 210 (388)
Q Consensus 136 ~~~~~~~~~~~-~----~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~ 210 (388)
.+......... . ......+++|||||++|+|+|.+|+....+.-....+ .+. ...+|+++++.+.+..
T Consensus 196 ~l~~~~e~a~~~~~~~~~~~~~~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~-----~~~--~~~~V~lve~~~~il~ 268 (502)
T 4g6h_A 196 TFAANLEKANLLPKGDPERRRLLSIVVVGGGPTGVEAAGELQDYVHQDLRKFLP-----ALA--EEVQIHLVEALPIVLN 268 (502)
T ss_dssp HHHHHHHHHHHSCTTCHHHHHHTEEEEECCSHHHHHHHHHHHHHHHHTHHHHCH-----HHH--HHCEEEEECSSSSSST
T ss_pred HHHHHHHHHhcccccchhhccccceEEECCCcchhhhHHHHHHHHHHHHHhhcc-----ccc--ccceeEEecccccccc
Confidence 10000000000 0 0011257999999999999999886111000000000 000 1147999999987654
Q ss_pred cCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCC
Q psy4525 211 AFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNG 290 (388)
Q Consensus 211 ~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~ 290 (388)
.+. ++++ +.+.+.|. +.||++++++.++++.. ++
T Consensus 269 ~~~-~~~~-------------------------------~~~~~~L~------------~~GV~v~~~~~v~~v~~--~~ 302 (502)
T 4g6h_A 269 MFE-KKLS-------------------------------SYAQSHLE------------NTSIKVHLRTAVAKVEE--KQ 302 (502)
T ss_dssp TSC-HHHH-------------------------------HHHHHHHH------------HTTCEEETTEEEEEECS--SE
T ss_pred CCC-HHHH-------------------------------HHHHHHHH------------hcceeeecCceEEEEeC--Cc
Confidence 433 2222 22223332 68999999999999973 33
Q ss_pred ceeEEEEccCccccCCceeEEecceEEEccccCCccCC------CCCcccCCCccccCCCCCCeecchhhHHhHH
Q psy4525 291 AITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD------SDIPFNEKSCTVIPKEGVPVVTWEGWKAIDK 359 (388)
Q Consensus 291 ~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~------~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~ 359 (388)
.+......++ ...+++++||+||||+|++||+.. .+...+.++++.+|+.-...-..+.|...|+
T Consensus 303 ~~~~~~~~dg----~~~~~~i~ad~viwa~Gv~~~~~~~~l~~~~~~~~~~~g~I~Vd~~lq~~~~~~IfAiGD~ 373 (502)
T 4g6h_A 303 LLAKTKHEDG----KITEETIPYGTLIWATGNKARPVITDLFKKIPEQNSSKRGLAVNDFLQVKGSNNIFAIGDN 373 (502)
T ss_dssp EEEEEECTTS----CEEEEEEECSEEEECCCEECCHHHHHHHHHSGGGTTCCSSEEBCTTSBBTTCSSEEECGGG
T ss_pred eEEEEEecCc----ccceeeeccCEEEEccCCcCCHHHHhHHHhccccccCCCceeECCccccCCCCCEEEEEcc
Confidence 3344433332 123468999999999999998531 2334456677888865322112345555553
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-23 Score=214.44 Aligned_cols=227 Identities=13% Similarity=0.086 Sum_probs=167.2
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceee-CCCCCCcchhHHHHHHHHhhcCC-CcEEEceEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY-GVAPDHPEVKNVINTFTKTGDNP-RVNFYGNIC 88 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~-g~~p~~~~~~~~~~~~~~~~~~~-~i~~~~~~~ 88 (388)
..+++|+||||||||+++|..|++ .|++|+|||+.+.+||.+.+ ...|......++..++...+.+. +++++.++.
T Consensus 389 ~~~~~VvIIGgG~AGl~aA~~La~--~G~~V~liE~~~~~GG~~~~~~~~p~~~~~~~~~~~~~~~~~~~~gv~~~~~~~ 466 (690)
T 3k30_A 389 ESDARVLVVGAGPSGLEAARALGV--RGYDVVLAEAGRDLGGRVTQESALPGLSAWGRVKEYREAVLAELPNVEIYRESP 466 (690)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHH--HTCEEEEECSSSSSCTHHHHHHTSTTCGGGGHHHHHHHHHHHTCTTEEEESSCC
T ss_pred cccceEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCCCCEeeeccCCCchhHHHHHHHHHHHHHHHcCCCEEEECCe
Confidence 356899999999999999999999 79999999999999998854 33477777788888888888887 899888765
Q ss_pred EEEEeeeccc-ccccCEEEEeeCCCC-------CCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEc-
Q psy4525 89 LGQDISLGDL-TNAYHAVVLTYGADN-------DKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILG- 159 (388)
Q Consensus 89 v~~~~~~~~~-~~~yd~lvlAtG~~~-------~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIG- 159 (388)
+ +.++. ...||+||+|||+.+ +..+++||.+.+++++..++... ....+++|+|||
T Consensus 467 v----~~~~~~~~~~d~lvlAtG~~~~~~~~~~~~~~~i~G~~~~~v~~~~~~l~~-----------~~~~g~~VvViG~ 531 (690)
T 3k30_A 467 M----TGDDIVEFGFEHVITATGATWRTDGVARFHTTALPIAEGMQVLGPDDLFAG-----------RLPDGKKVVVYDD 531 (690)
T ss_dssp C----CHHHHHHTTCCEEEECCCEEECSSCCSSSCSSCCCBCTTSEEECHHHHHTT-----------CCCSSSEEEEEEC
T ss_pred e----cHHHHhhcCCCEEEEcCCCccccccccccCCCCCCCCCCCcEEcHHHHhCC-----------CCCCCCEEEEEcC
Confidence 4 22332 347999999999874 13568888887788877766521 123478999999
Q ss_pred -CChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccc
Q psy4525 160 -QGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGV 238 (388)
Q Consensus 160 -gG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~ 238 (388)
+|.+|+|+|..|. ..+ .+|+++.+.+.+.....+
T Consensus 532 ggG~~g~e~A~~L~--------------------~~g-~~Vtlv~~~~~l~~~~~~------------------------ 566 (690)
T 3k30_A 532 DHYYLGGVVAELLA--------------------QKG-YEVSIVTPGAQVSSWTNN------------------------ 566 (690)
T ss_dssp SCSSHHHHHHHHHH--------------------HTT-CEEEEEESSSSTTGGGGG------------------------
T ss_pred CCCccHHHHHHHHH--------------------hCC-CeeEEEeccccccccccc------------------------
Confidence 9999999999886 233 579999988764321100
Q ss_pred hhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEE
Q psy4525 239 HEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFR 318 (388)
Q Consensus 239 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~ 318 (388)
+.....+.+.+. +.||++++++.++++..+ + ..+.. +.++++++++||.||+
T Consensus 567 -------~~~~~~l~~~l~------------~~GV~i~~~~~V~~i~~~--~--~~v~~-----~~~~~~~~i~aD~VV~ 618 (690)
T 3k30_A 567 -------TFEVNRIQRRLI------------ENGVARVTDHAVVAVGAG--G--VTVRD-----TYASIERELECDAVVM 618 (690)
T ss_dssp -------GTCHHHHHHHHH------------HTTCEEEESEEEEEEETT--E--EEEEE-----TTTCCEEEEECSEEEE
T ss_pred -------chhHHHHHHHHH------------HCCCEEEcCcEEEEEECC--e--EEEEE-----ccCCeEEEEECCEEEE
Confidence 001122223332 579999999999999742 2 12221 1256778999999999
Q ss_pred ccccCCccC
Q psy4525 319 SIGYQSRCV 327 (388)
Q Consensus 319 a~G~~p~~~ 327 (388)
|+|++|+..
T Consensus 619 A~G~~p~~~ 627 (690)
T 3k30_A 619 VTARLPREE 627 (690)
T ss_dssp ESCEEECCH
T ss_pred CCCCCCChH
Confidence 999999873
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-22 Score=208.99 Aligned_cols=143 Identities=20% Similarity=0.269 Sum_probs=113.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceee-CCCCCCcchhHHHHHHHHhhcCCCcEEEceEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY-GVAPDHPEVKNVINTFTKTGDNPRVNFYGNICL 89 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~-g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v 89 (388)
..+++|+||||||||+++|..|++ .|++|+|||+++.+||.+.+ ...|......++..++.+++++.+++++.++.+
T Consensus 371 ~~~~~vvIIGgG~AGl~aA~~l~~--~g~~V~lie~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~v 448 (671)
T 1ps9_A 371 VQKKNLAVVGAGPAGLAFAINAAA--RGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTV 448 (671)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCCCCeeeccccCCCHHHHHHHHHHHHHHHHHcCCEEEeCcEe
Confidence 346899999999999999999999 89999999999999998754 344665555666677777777789999887754
Q ss_pred EEEeeeccccc-ccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHH
Q psy4525 90 GQDISLGDLTN-AYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVA 168 (388)
Q Consensus 90 ~~~~~~~~~~~-~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a 168 (388)
.. . .. .||+||+|||+.+ +.+++||.+.+++++..+++. .....+++|+|||||++|+|+|
T Consensus 449 ~~----~--~~~~~d~lviAtG~~p-~~~~i~G~~~~~v~~~~~~l~-----------~~~~~~~~VvVIGgG~~g~E~A 510 (671)
T 1ps9_A 449 TA----D--QLQAFDETILASGIVP-RTPPIDGIDHPKVLSYLDVLR-----------DKAPVGNKVAIIGCGGIGFDTA 510 (671)
T ss_dssp CS----S--SSCCSSEEEECCCEEE-CCCCCBTTTSTTEEEHHHHHT-----------SCCCCCSEEEEECCHHHHHHHH
T ss_pred cH----H--HhhcCCEEEEccCCCc-CCCCCCCCCCCcEeeHHHHhh-----------CCCCCCCeEEEECCChhHHHHH
Confidence 21 1 23 7999999999987 578899987778887665542 1123579999999999999999
Q ss_pred HHhcc
Q psy4525 169 RILLS 173 (388)
Q Consensus 169 ~~L~~ 173 (388)
..|++
T Consensus 511 ~~l~~ 515 (671)
T 1ps9_A 511 MYLSQ 515 (671)
T ss_dssp HHHTC
T ss_pred HHHHh
Confidence 99973
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-22 Score=214.21 Aligned_cols=228 Identities=15% Similarity=0.170 Sum_probs=160.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeC---CCCCCcchhHHHHHHHHhhcC-CCcEEEceEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYG---VAPDHPEVKNVINTFTKTGDN-PRVNFYGNIC 88 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g---~~p~~~~~~~~~~~~~~~~~~-~~i~~~~~~~ 88 (388)
.++|+||||||||++||..|++ .|++|+|||+++.+||.+.+. ..+. ....++...+.+.+.+ .+++++.++.
T Consensus 128 ~~dVvVIGaGpAGl~AA~~la~--~G~~V~lie~~~~~GG~~~~~~k~~i~~-~~~~~~~~~~~~~l~~~~~v~~~~~~~ 204 (965)
T 2gag_A 128 HTDVLVVGAGPAGLAAAREASR--SGARVMLLDERAEAGGTLLDTAGEQIDG-MDSSAWIEQVTSELAEAEETTHLQRTT 204 (965)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSSGGGGGSSCCEETT-EEHHHHHHHHHHHHHHSTTEEEESSEE
T ss_pred CCCEEEECCCHHHHHHHHHHHh--CCCcEEEEeCCCCCCceeccCCccccCC-CCHHHHHHHHHHHHhhcCCcEEEeCCE
Confidence 4689999999999999999999 899999999999999888641 1111 1234444554444544 4888888766
Q ss_pred EEEE---------------eee--------ccc-ccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCcc
Q psy4525 89 LGQD---------------ISL--------GDL-TNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDA 144 (388)
Q Consensus 89 v~~~---------------~~~--------~~~-~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~ 144 (388)
+... +.+ ... ...||+||||||+.+ +.+++||.+.++++++..+...++..
T Consensus 205 V~~i~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~i~~d~lVlATGs~p-~~~~ipG~~~~gv~~~~~~~~~l~~~---- 279 (965)
T 2gag_A 205 VFGSYDANYLIAAQRRTVHLDGPSGPGVSRERIWHIRAKQVVLATGAHE-RPIVFENNDRPGIMLAGAVRSYLNRY---- 279 (965)
T ss_dssp EEEEETTTEEEEEEECSTTCSSCCCTTCCSEEEEEEEEEEEEECCCEEE-CCCCCBTCCSTTEEEHHHHHHHHHTT----
T ss_pred EEeeecCCceeeeEeecccccccccccCCCCceEEEECCEEEECCCCcc-CCCCCCCCCCCCEEEhHHHHHHHHhc----
Confidence 5321 011 111 237999999999987 57889999999999887664333221
Q ss_pred ccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCC
Q psy4525 145 SLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLP 224 (388)
Q Consensus 145 ~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~ 224 (388)
....+++|+|||+|++|+|+|..|. +.+. +|+++++++.+...
T Consensus 280 ---~~~~gk~vvViGgG~~g~E~A~~L~--------------------~~G~-~Vtvv~~~~~~~~~------------- 322 (965)
T 2gag_A 280 ---GVRAGARIAVATTNDSAYELVRELA--------------------ATGG-VVAVIDARSSISAA------------- 322 (965)
T ss_dssp ---CEESCSSEEEEESSTTHHHHHHHHG--------------------GGTC-CSEEEESCSSCCHH-------------
T ss_pred ---CCCCCCeEEEEcCCHHHHHHHHHHH--------------------HcCC-cEEEEECCCccchh-------------
Confidence 1124689999999999999999876 2444 49999988654210
Q ss_pred CceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEcc--Ccc
Q psy4525 225 HVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFAN--QQA 302 (388)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~--~~~ 302 (388)
.+.+ .+.||+++++..++++..++++++..+.+.+ ...
T Consensus 323 ----------------------------~~~l------------~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~ 362 (965)
T 2gag_A 323 ----------------------------AAQA------------VADGVQVISGSVVVDTEADENGELSAIVVAELDEAR 362 (965)
T ss_dssp ----------------------------HHHH------------HHTTCCEEETEEEEEEEECTTSCEEEEEEEEECTTC
T ss_pred ----------------------------HHHH------------HhCCeEEEeCCEeEEEeccCCCCEEEEEEEeccccC
Confidence 0111 1579999999999999863246777777643 000
Q ss_pred ccCCceeEEecceEEEccccCCcc
Q psy4525 303 LVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 303 ~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
..++.++++||.||+|+|++||+
T Consensus 363 -~~G~~~~i~~D~Vv~a~G~~P~~ 385 (965)
T 2gag_A 363 -ELGGTQRFEADVLAVAGGFNPVV 385 (965)
T ss_dssp -CEEEEEEEECSEEEEECCEEECC
T ss_pred -CCCceEEEEcCEEEECCCcCcCh
Confidence 01223789999999999999987
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-22 Score=204.24 Aligned_cols=248 Identities=14% Similarity=0.204 Sum_probs=150.0
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC-C-------CCCCce-eeCCCCCC-------------------
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL-P-------VPFGLV-RYGVAPDH------------------- 62 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~-~-------~~gg~~-~~g~~p~~------------------- 62 (388)
...+||+||||||||++||..|++ .|.+|+|||+. + .+||.| +.++.|.+
T Consensus 105 ~~~~dvvVIG~GpAGl~aA~~l~~--~g~~v~liE~~~~~~~g~~~~~GG~~~~~g~iP~~~l~~~~~~~~~~~~~~~~g 182 (598)
T 2x8g_A 105 KYDYDLIVIGGGSGGLAAGKEAAK--YGAKTAVLDYVEPTPIGTTWGLGGTCVNVGCIPKKLMHQAGLLSHALEDAEHFG 182 (598)
T ss_dssp SSSEEEEEECCSHHHHHHHHHHHH--TTCCEEEECCCCCCTTCCCCCTTHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccccEEEECCCccHHHHHHHHHh--CCCeEEEEeccCCcccccccccCceEeccCCCchHHHHHHHHHHHHHhhHHhCC
Confidence 346899999999999999999999 89999999973 2 367754 22322211
Q ss_pred ---------cchhHHHHHHH-----------HhhcCCCcEEEceEEEEE---Eeee--ccc---ccccCEEEEeeCCCCC
Q psy4525 63 ---------PEVKNVINTFT-----------KTGDNPRVNFYGNICLGQ---DISL--GDL---TNAYHAVVLTYGADND 114 (388)
Q Consensus 63 ---------~~~~~~~~~~~-----------~~~~~~~i~~~~~~~v~~---~~~~--~~~---~~~yd~lvlAtG~~~~ 114 (388)
....++.++.. ..+...+++++.+..... .+.+ .++ ...||+||||||+.+
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~~~~v~v~~~~g~~~~~~~d~lviAtGs~p- 261 (598)
T 2x8g_A 183 WSLDRSKISHNWSTMVEGVQSHIGSLNWGYKVALRDNQVTYLNAKGRLISPHEVQITDKNQKVSTITGNKIILATGERP- 261 (598)
T ss_dssp CCCCGGGCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECSEEEEEETTEEEEECTTCCEEEEEEEEEEECCCEEE-
T ss_pred ccccCCcCccCHHHHHHHHHHHHHHHHHHHHHHHhhCCcEEEEEEEEEcCCCEEEEEeCCCCeEEEEeCEEEEeCCCCC-
Confidence 11222222221 223456788775432211 1222 222 247999999999987
Q ss_pred CCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcC
Q psy4525 115 KKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTS 194 (388)
Q Consensus 115 ~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
+.|++||.+. .+++..++. .....+++++|||||++|+|+|..|+ +.
T Consensus 262 ~~p~i~G~~~-~~~~~~~~~------------~~~~~~~~vvViGgG~~g~E~A~~l~--------------------~~ 308 (598)
T 2x8g_A 262 KYPEIPGAVE-YGITSDDLF------------SLPYFPGKTLVIGASYVALECAGFLA--------------------SL 308 (598)
T ss_dssp CCCSSTTHHH-HCEEHHHHT------------TCSSCCCSEEEECCSHHHHHHHHHHH--------------------HT
T ss_pred CCCCCCCccc-ceEcHHHHh------------hCccCCCEEEEECCCHHHHHHHHHHH--------------------Hc
Confidence 5778888542 223333332 11224678999999999999999886 23
Q ss_pred CCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEE
Q psy4525 195 RIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFR 274 (388)
Q Consensus 195 ~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 274 (388)
+ .+||++.|+ .+...+. +++. +.+.+.+. +.||+
T Consensus 309 g-~~Vtlv~~~-~~l~~~d-~~~~-------------------------------~~~~~~l~------------~~gv~ 342 (598)
T 2x8g_A 309 G-GDVTVMVRS-ILLRGFD-QQMA-------------------------------EKVGDYME------------NHGVK 342 (598)
T ss_dssp T-CCEEEEESS-CSSTTSC-HHHH-------------------------------HHHHHHHH------------HTTCE
T ss_pred C-CEEEEEECC-cCcCcCC-HHHH-------------------------------HHHHHHHH------------hCCCE
Confidence 4 469999987 3322211 2211 12222222 57899
Q ss_pred EEecCcceeeeeC-----CC---CceeEEEEccCccccCCceeEEecceEEEccccCCccCC-----CCCcccCCCcccc
Q psy4525 275 PIFLRSPTEFKLN-----DN---GAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD-----SDIPFNEKSCTVI 341 (388)
Q Consensus 275 ~~~~~~~~~i~~~-----~~---~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~-----~~l~~~~~~gi~l 341 (388)
++++..++++... .+ +.+ .+.+.. ..++..++++|.||+|+|++||+.. .++++++++++.+
T Consensus 343 i~~~~~v~~v~~~~~~~~~~~~~~~~-~v~~~~----~~g~~~~~~~D~vi~a~G~~p~~~~l~~~~~gl~~~~~G~i~v 417 (598)
T 2x8g_A 343 FAKLCVPDEIKQLKVVDTENNKPGLL-LVKGHY----TDGKKFEEEFETVIFAVGREPQLSKVLCETVGVKLDKNGRVVC 417 (598)
T ss_dssp EEETEEEEEEEEEECCBTTTTBCCEE-EEEEEE----TTSCEEEEEESEEEECSCEEECGGGTBCGGGCCCBCTTSCBCC
T ss_pred EEECCeEEEEEeccccccccCCCceE-EEEEEe----CCCcEEeccCCEEEEEeCCccccCccCchhcCceECCCCcEEe
Confidence 9999888877531 11 222 122110 1222234569999999999999731 3566766666877
Q ss_pred CCCC
Q psy4525 342 PKEG 345 (388)
Q Consensus 342 ~~~~ 345 (388)
|+..
T Consensus 418 d~~~ 421 (598)
T 2x8g_A 418 TDDE 421 (598)
T ss_dssp CTTS
T ss_pred CCCC
Confidence 7653
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-22 Score=210.57 Aligned_cols=230 Identities=16% Similarity=0.104 Sum_probs=152.9
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceee-CCCCCCcchhHHHHHHHHhhcC------CCcEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY-GVAPDHPEVKNVINTFTKTGDN------PRVNF 83 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~-g~~p~~~~~~~~~~~~~~~~~~------~~i~~ 83 (388)
...++|+||||||||++||..|++ .|++|+|||+.+.+||.+.+ ...|.......+.+++...++. .++++
T Consensus 387 ~~~~~VvIIGgGpAGl~aA~~L~~--~G~~Vtlie~~~~~GG~~~~~~~~pg~~~~~~~~~~~~~~i~~~~~~~~~~v~i 464 (729)
T 1o94_A 387 KNKDSVLIVGAGPSGSEAARVLME--SGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLA 464 (729)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSTTTTHHHHTTSTTCGGGHHHHHHHHHHHHHHHHHSTTCEEE
T ss_pred cCCceEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCcCCeeeecccCCChHHHHHHHHHHHHHHHHhhcccCCceEE
Confidence 446899999999999999999999 89999999999999998865 3335554444444444333322 25665
Q ss_pred EceEEEEEEeeeccc-ccccCEEEEeeCCCC-------CCCCCCCCCC--CCCeeecccccccccCCCCccccCcCCCCC
Q psy4525 84 YGNICLGQDISLGDL-TNAYHAVVLTYGADN-------DKKLNIPGED--GKNIISARSFVGWYNGLPEDASLDLSLDCE 153 (388)
Q Consensus 84 ~~~~~v~~~~~~~~~-~~~yd~lvlAtG~~~-------~~~~~i~g~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (388)
..+.. ++.++. ...||+||+|||+.+ ++.+++||.+ .+++++..+++.. ....++
T Consensus 465 ~~~~~----v~~~~~~~~~~d~vviAtG~~~~~~~~~~p~~~~ipG~~~~~~~v~~~~~~l~~-----------~~~~gk 529 (729)
T 1o94_A 465 LGQKP----MTADDVLQYGADKVIIATGARWNTDGTNCLTHDPIPGADASLPDQLTPEQVMDG-----------KKKIGK 529 (729)
T ss_dssp CSCCC----CCHHHHHTSCCSEEEECCCEEECSSCCCTTTSSCCTTCCTTSTTEECHHHHHHC-----------CSCCCS
T ss_pred EeCeE----EehhhccccCCCEEEEcCCCCcccccccCccCCCCCCccccCCCEEEHHHHhcC-----------CCCCCC
Confidence 54432 233333 347999999999873 2467889987 6788887776531 123478
Q ss_pred eEEEEc--CChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEec
Q psy4525 154 EATILG--QGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFR 231 (388)
Q Consensus 154 ~vvVIG--gG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~ 231 (388)
+|+||| ||++|+|+|..|+ +.+ .+||+++|++ +... .. +
T Consensus 530 ~VvVIG~GgG~~g~e~A~~l~--------------------~~G-~~Vtlv~~~~-l~~~---~~---~----------- 570 (729)
T 1o94_A 530 RVVILNADTYFMAPSLAEKLA--------------------TAG-HEVTIVSGVH-LANY---MH---F----------- 570 (729)
T ss_dssp EEEEEECCCSSHHHHHHHHHH--------------------HTT-CEEEEEESSC-TTHH---HH---H-----------
T ss_pred eEEEEcCCCCchHHHHHHHHH--------------------HcC-CEEEEEeccc-cccc---cc---c-----------
Confidence 999999 9999999999876 234 4799999987 3210 00 0
Q ss_pred ccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEc--cCcc-------
Q psy4525 232 NEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFA--NQQA------- 302 (388)
Q Consensus 232 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~--~~~~------- 302 (388)
+.....+.+.+. ++||++++++.++++.. ++ + .+... ++..
T Consensus 571 --------------~~~~~~~~~~l~------------~~GV~i~~~~~v~~i~~--~~-v-~~~~~~~~~~~~~~~~~~ 620 (729)
T 1o94_A 571 --------------TLEYPNMMRRLH------------ELHVEELGDHFCSRIEP--GR-M-EIYNIWGDGSKRTYRGPG 620 (729)
T ss_dssp --------------TTCHHHHHHHHH------------HTTCEEECSEEEEEEET--TE-E-EEEETTCSCSCCCCCCTT
T ss_pred --------------cccHHHHHHHHH------------hCCCEEEcCcEEEEEEC--Ce-E-EEEEecCCceEEeccccc
Confidence 000112222222 57999999999999973 22 2 12211 1100
Q ss_pred ----ccCCceeEEecceEEEccccCCcc
Q psy4525 303 ----LVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 303 ----~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
...++.++++||.||+|+|++|++
T Consensus 621 ~~~~~~~~~~~~i~aD~Vv~a~G~~p~~ 648 (729)
T 1o94_A 621 VSPRDANTSHRWIEFDSLVLVTGRHSEC 648 (729)
T ss_dssp SCSSCCCCCCEEEECSEEEEESCEEECC
T ss_pred ccccccCCcceeeeCCEEEECCCCCCCh
Confidence 011233459999999999999986
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8.5e-22 Score=198.03 Aligned_cols=165 Identities=12% Similarity=0.172 Sum_probs=113.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCC---------------------------Ccc
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPD---------------------------HPE 64 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~---------------------------~~~ 64 (388)
..++|+|||||++|+++|..|++ .|++|+|||+.+.+||.|..+..|. +..
T Consensus 15 ~~~dVvIIGaG~aGl~aA~~L~~--~G~~v~iiE~~~~~GG~w~~~~~pg~~~d~~~~~~~~~f~~~~~~~~~~~~~~~~ 92 (542)
T 1w4x_A 15 EEVDVLVVGAGFSGLYALYRLRE--LGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTERYAS 92 (542)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBSSCB
T ss_pred CCCCEEEECccHHHHHHHHHHHh--CCCCEEEEeCCCCCCCcccccCCCceeecccccccccccChhhhhccCcccccCC
Confidence 35799999999999999999999 8999999999999999884332221 112
Q ss_pred hhHHHHHHHHhhcCCC--cEEEceEEEEE----------Eeeeccc-ccccCEEEEeeCCC-CCCCCCCCCCC-CCC-ee
Q psy4525 65 VKNVINTFTKTGDNPR--VNFYGNICLGQ----------DISLGDL-TNAYHAVVLTYGAD-NDKKLNIPGED-GKN-II 128 (388)
Q Consensus 65 ~~~~~~~~~~~~~~~~--i~~~~~~~v~~----------~~~~~~~-~~~yd~lvlAtG~~-~~~~~~i~g~~-~~~-v~ 128 (388)
..++..++...+++++ .++++++.|.. .++..++ ...+|+||+|||.. .++.|++||.+ ..+ ++
T Consensus 93 ~~~i~~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~~~G~~~~ad~vV~AtG~~s~p~~p~i~G~~~f~G~~~ 172 (542)
T 1w4x_A 93 QPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSVPQLPNFPGLKDFAGNLY 172 (542)
T ss_dssp HHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCCCCCCTTGGGCCSEEE
T ss_pred HHHHHHHHHHHHHHcCCCceEEcCcEEEEEEEcCCCCeEEEEECCCCEEEeCEEEECcCCCCCCCCCCCCCcccCCCceE
Confidence 3455666666665554 45666655432 1333333 24799999999953 23467888864 233 34
Q ss_pred ecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcc
Q psy4525 129 SARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGAL 208 (388)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~ 208 (388)
+...+.. + .....+|+|+|||+|.+|+|+|..|+ ..+.+|+++.|++.+
T Consensus 173 hs~~~~~------~----~~~~~gk~V~VIG~G~sg~e~a~~l~---------------------~~~~~vtv~~r~~~~ 221 (542)
T 1w4x_A 173 HTGNWPH------E----PVDFSGQRVGVIGTGSSGIQVSPQIA---------------------KQAAELFVFQRTPHF 221 (542)
T ss_dssp EGGGCCS------S----CCCCBTCEEEEECCSHHHHHHHHHHH---------------------HHBSEEEEEESSCCC
T ss_pred ECCCCCC------c----hhccCCCEEEEECCCccHHHHHHHHh---------------------hcCceEEEEEcCCcc
Confidence 4433320 0 12346899999999999999999886 123589999999887
Q ss_pred c
Q psy4525 209 Q 209 (388)
Q Consensus 209 ~ 209 (388)
.
T Consensus 222 ~ 222 (542)
T 1w4x_A 222 A 222 (542)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-22 Score=200.08 Aligned_cols=255 Identities=14% Similarity=0.097 Sum_probs=152.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC-c------eeeCCCCC------------------Ccchh
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG-L------VRYGVAPD------------------HPEVK 66 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg-~------~~~g~~p~------------------~~~~~ 66 (388)
..++|+|||||+||++||..|++...+.+|+|||+++.++. . +.++..+. +....
T Consensus 10 ~~~~vvIIGgG~AGl~aA~~L~~~~~g~~V~lie~~~~~~y~r~~lsk~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (493)
T 1m6i_A 10 SHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPPS 89 (493)
T ss_dssp SEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCGG
T ss_pred CcCCEEEECChHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCCCCCCCHHhhcCCccchhhcccccccccccccccccchH
Confidence 45799999999999999999988556899999999876431 1 11110000 00000
Q ss_pred HHHHHHHHh--hcCCCcEEEceEEEE-E-----Eeeecccc-cccCEEEEeeCCCCCCCCCCCCCC----CCCeeecccc
Q psy4525 67 NVINTFTKT--GDNPRVNFYGNICLG-Q-----DISLGDLT-NAYHAVVLTYGADNDKKLNIPGED----GKNIISARSF 133 (388)
Q Consensus 67 ~~~~~~~~~--~~~~~i~~~~~~~v~-~-----~~~~~~~~-~~yd~lvlAtG~~~~~~~~i~g~~----~~~v~~~~~~ 133 (388)
.+. ..... +.+.+++++.++.+. . .+++.++. ..||+||||||+.+ +.+++++.. .++++..+.+
T Consensus 90 ~~~-~~~~l~~~~~~gv~~~~g~~v~~id~~~~~V~~~~g~~i~yd~lviATGs~p-~~~~~~~~~~~~~~~~v~~~~~~ 167 (493)
T 1m6i_A 90 FYV-SAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTP-RSLSAIDRAGAEVKSRTTLFRKI 167 (493)
T ss_dssp GSB-CTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEE-CCCHHHHTSCHHHHHTEEECCSH
T ss_pred hhc-chhhhhhhhcCCeEEEcCCEEEEEECCCCEEEECCCCEEECCEEEECCCCCC-CCCCCcccccccccCceEEEcCH
Confidence 000 00000 124678888775442 2 24444443 48999999999987 455554421 1244433322
Q ss_pred cccccCCCCcccc-CcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccC
Q psy4525 134 VGWYNGLPEDASL-DLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAF 212 (388)
Q Consensus 134 ~~~~~~~~~~~~~-~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~ 212 (388)
.. +..+ .....+++|+|||+|++|+|+|..|+ ....+.+ .+|+++.+.+.+....
T Consensus 168 ~d-------~~~l~~~~~~~~~vvViGgG~iG~E~A~~l~----------------~~~~~~g-~~V~~v~~~~~~~~~~ 223 (493)
T 1m6i_A 168 GD-------FRSLEKISREVKSITIIGGGFLGSELACALG----------------RKARALG-TEVIQLFPEKGNMGKI 223 (493)
T ss_dssp HH-------HHHHHHHHHHCSEEEEECCSHHHHHHHHHHH----------------HHHHHHT-CEEEEECSSSSTTTTT
T ss_pred HH-------HHHHHHHhhcCCeEEEECCCHHHHHHHHHHH----------------hhhhhcC-CEEEEEecCccccccc
Confidence 11 0000 11123789999999999999999886 1001112 3699998875432221
Q ss_pred CHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCce
Q psy4525 213 TIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAI 292 (388)
Q Consensus 213 ~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v 292 (388)
.++++. +.+.+.+. +.||++++++.++++..++ +.+
T Consensus 224 l~~~~~-------------------------------~~~~~~l~------------~~GV~v~~~~~V~~i~~~~-~~~ 259 (493)
T 1m6i_A 224 LPEYLS-------------------------------NWTMEKVR------------REGVKVMPNAIVQSVGVSS-GKL 259 (493)
T ss_dssp SCHHHH-------------------------------HHHHHHHH------------TTTCEEECSCCEEEEEEET-TEE
T ss_pred CCHHHH-------------------------------HHHHHHHH------------hcCCEEEeCCEEEEEEecC-CeE
Confidence 112211 12222222 6799999999999997532 333
Q ss_pred eEEEEccCccccCCceeEEecceEEEccccCCccCC---CCCcccC-CCccccCCCC
Q psy4525 293 TGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD---SDIPFNE-KSCTVIPKEG 345 (388)
Q Consensus 293 ~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~---~~l~~~~-~~gi~l~~~~ 345 (388)
.+.+ .++++++||.||+|+|++||+.. .++++++ ++|+.+|+..
T Consensus 260 -~v~l--------~dG~~i~aD~Vv~a~G~~pn~~l~~~~gl~~~~~~ggi~Vd~~l 307 (493)
T 1m6i_A 260 -LIKL--------KDGRKVETDHIVAAVGLEPNVELAKTGGLEIDSDFGGFRVNAEL 307 (493)
T ss_dssp -EEEE--------TTSCEEEESEEEECCCEEECCTTHHHHTCCBCTTTCSEECCTTC
T ss_pred -EEEE--------CCCCEEECCEEEECCCCCccHHHHHHcCCccccCCCcEEECCCc
Confidence 4543 34568999999999999999742 4667764 4688888753
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-20 Score=187.96 Aligned_cols=172 Identities=17% Similarity=0.136 Sum_probs=115.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhC------------CCCcEEEEcCCCCCC---CceeeCCC--------------C---
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLL------------PQSTVDIYEKLPVPF---GLVRYGVA--------------P--- 60 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~------------~g~~v~lie~~~~~g---g~~~~g~~--------------p--- 60 (388)
.+||||||+||+||++|..|.+.. .+...+++|+.+.++ |++..|.. |
T Consensus 39 i~Dvi~IGaGp~gLa~A~~L~~~~~~~~~~~~~~~~~~~~~~f~e~~~~f~Wh~g~~~p~~~~q~~fl~Dlvtl~~P~s~ 118 (501)
T 4b63_A 39 LHDLLCVGFGPASLAIAIALHDALDPRLNKSASNIHAQPKICFLERQKQFAWHSGMLVPGSKMQISFIKDLATLRDPRSS 118 (501)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHCTTTCTTC----CCCCEEEEESSSSCCSSGGGCCTTCBCSSCGGGSSSTTTCTTCT
T ss_pred cCcEEEEcccHHHHHHHHHHHhcCCCceEEeccccCCCcceeeEeccCCCCcCCCCCCCCccccccchhhhccccCCCCc
Confidence 368999999999999999998731 234678899887654 22111100 1
Q ss_pred ---------------------CCcchhHHHHHHHHhhcCCCcEEEceEEEEEE----------------eeeccc-----
Q psy4525 61 ---------------------DHPEVKNVINTFTKTGDNPRVNFYGNICLGQD----------------ISLGDL----- 98 (388)
Q Consensus 61 ---------------------~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~----------------~~~~~~----- 98 (388)
.++...++.+|++.++++++..+++++.|... ++..+.
T Consensus 119 ~sf~~yl~~~~rl~~f~~~~~~~p~r~E~~~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~ 198 (501)
T 4b63_A 119 FTFLNYLHQKGRLIHFTNLSTFLPARLEFEDYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEI 198 (501)
T ss_dssp TSHHHHHHHHTCHHHHHTTCCSCCBHHHHHHHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCE
T ss_pred cchHHHHHHhCCccCCccccCCCCCHHHHHHHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceE
Confidence 12445678888888888888777777776321 222111
Q ss_pred -ccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcc
Q psy4525 99 -TNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQ 177 (388)
Q Consensus 99 -~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~ 177 (388)
...++.||+|||..| ..|..++. ...++|+.+|......+ ....+++|+|+|||+|+||+|++..|+
T Consensus 199 ~~~~ar~vVlatG~~P-~iP~~~~~-~g~v~Hss~y~~~~~~~-----~~~~~~gKrV~VVG~G~SA~ei~~~L~----- 266 (501)
T 4b63_A 199 SARRTRKVVIAIGGTA-KMPSGLPQ-DPRIIHSSKYCTTLPAL-----LKDKSKPYNIAVLGSGQSAAEIFHDLQ----- 266 (501)
T ss_dssp EEEEEEEEEECCCCEE-CCCTTSCC-CTTEEEGGGHHHHHHHH-----SCCTTSCCEEEEECCSHHHHHHHHHHH-----
T ss_pred EEEEeCEEEECcCCCC-CCCCCCCC-Ccceeeccccccchhhc-----cccccCCcEEEEECCcHHHHHHHHHHH-----
Confidence 125789999999765 34444332 35789998887432211 023467899999999999999999886
Q ss_pred cccccCchhHHHhhhcCCCcEEEEEeecCcccc
Q psy4525 178 LKSTDITEHSLEKLSTSRIKSVNLVGRRGALQV 210 (388)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~ 210 (388)
....+.+|+++.|++.+..
T Consensus 267 --------------~~~~~~~v~~~~R~~~~~p 285 (501)
T 4b63_A 267 --------------KRYPNSRTTLIMRDSAMRP 285 (501)
T ss_dssp --------------HHSTTCEEEEECSSSSCCB
T ss_pred --------------hcCCCceEEEEeCCCcccc
Confidence 1234468999999987654
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.5e-21 Score=191.29 Aligned_cols=280 Identities=13% Similarity=0.079 Sum_probs=158.5
Q ss_pred CCcEEEECccHHHHHHHHHHHhh-CCCCcEEEEcCCCCCCCce-eeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKL-LPQSTVDIYEKLPVPFGLV-RYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~-~~g~~v~lie~~~~~gg~~-~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
+++|+|||||+||+++|..|++. ..+.+|+|||+.+...... ...........+++...+.+.+++.+++++.+....
T Consensus 4 m~~vvIIGgG~aGl~aA~~L~~~~~~g~~Vtlie~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~gv~~~~~~v~~ 83 (437)
T 3sx6_A 4 SAHVVILGAGTGGMPAAYEMKEALGSGHEVTLISANDYFQFVPSNPWVGVGWKERDDIAFPIRHYVERKGIHFIAQSAEQ 83 (437)
T ss_dssp SCEEEEECCSTTHHHHHHHHHHHHGGGSEEEEECSSSEEECGGGHHHHHHTSSCHHHHEEECHHHHHTTTCEEECSCEEE
T ss_pred CCcEEEECCcHHHHHHHHHHhccCCCcCEEEEEeCCCCCcccCCccccccCccCHHHHHHHHHHHHHHCCCEEEEeEEEE
Confidence 47999999999999999999983 3589999999987532110 000001222344454555667777899988665443
Q ss_pred EE-----eeecccc-cccCEEEEeeCCCCCCCCCCCCCCCC--CeeecccccccccCCCCccccCcCCCCCeEEEEcCCh
Q psy4525 91 QD-----ISLGDLT-NAYHAVVLTYGADNDKKLNIPGEDGK--NIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGN 162 (388)
Q Consensus 91 ~~-----~~~~~~~-~~yd~lvlAtG~~~~~~~~i~g~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~ 162 (388)
.+ +++++.. ..||+||+|||+.+ +.+++||.+.. +.++...+.......... .....+++++|||+|+
T Consensus 84 id~~~~~V~~~~g~~i~~d~lviAtG~~~-~~~~ipG~~~~~~~~~~~~~~~~a~~~~~~~---~~~~~~~~~vVVGgG~ 159 (437)
T 3sx6_A 84 IDAEAQNITLADGNTVHYDYLMIATGPKL-AFENVPGSDPHEGPVQSICTVDHAERAFAEY---QALLREPGPIVIGAMA 159 (437)
T ss_dssp EETTTTEEEETTSCEEECSEEEECCCCEE-CGGGSTTCSTTTSSEECCSSHHHHHHHHHHH---HHHHHSCCCEEEEECT
T ss_pred EEcCCCEEEECCCCEEECCEEEECCCCCc-CcccCCCCCcccCcceecccccHHHHHHHHH---HHHHhCCCEEEEEcCC
Confidence 32 4454444 48999999999987 47788887642 332222211100000000 0001134678999866
Q ss_pred HH------HHHHHHhccCCcccccccCchhHHHhhhcCCCc---E-EEEEeecCcccccCCHHHHHHHhcCCCceEEecc
Q psy4525 163 VA------MDVARILLSPVDQLKSTDITEHSLEKLSTSRIK---S-VNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRN 232 (388)
Q Consensus 163 sg------~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~---~-V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~ 232 (388)
+| +|+|..++ ..+++.+.. + |+++.+.+.+... . ++
T Consensus 160 ~~g~~G~~~E~a~~la----------------~~l~~~g~~~~~~~Vtlv~~~~~~~~~-~---------l~-------- 205 (437)
T 3sx6_A 160 GASCFGPAYEYAMIVA----------------SDLKKRGMRDKIPSFTFITSEPYIGHL-G---------IQ-------- 205 (437)
T ss_dssp TCCCCHHHHHHHHHHH----------------HHHHHTTCGGGCSCEEEEESSSSTTCT-T---------TT--------
T ss_pred CCCcCcHHHHHHHHHH----------------HHHHHcCCcccCcEEEEEcCCcccccc-c---------cC--------
Confidence 54 99997665 223334432 2 9999988654110 0 00
Q ss_pred cccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEe
Q psy4525 233 EQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIP 312 (388)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~ 312 (388)
..+.....+.+.+. +.||++++++.++++..+ +........++. +.++++++
T Consensus 206 -----------~~~~~~~~~~~~l~------------~~gI~~~~~~~v~~v~~~--~v~~~~~~~~g~---~~~~~~i~ 257 (437)
T 3sx6_A 206 -----------GVGDSKGILTKGLK------------EEGIEAYTNCKVTKVEDN--KMYVTQVDEKGE---TIKEMVLP 257 (437)
T ss_dssp -----------CCTTHHHHHHHHHH------------HTTCEEECSEEEEEEETT--EEEEEEECTTSC---EEEEEEEE
T ss_pred -----------cchHHHHHHHHHHH------------HCCCEEEcCCEEEEEECC--eEEEEecccCCc---cccceEEE
Confidence 00111223333333 579999999999999732 211111111110 12267899
Q ss_pred cceEEEccccCCccCC---CCCcccCCCccccCCCCCCeecchhhHHhHH
Q psy4525 313 SGIAFRSIGYQSRCVD---SDIPFNEKSCTVIPKEGVPVVTWEGWKAIDK 359 (388)
Q Consensus 313 ~D~Vi~a~G~~p~~~~---~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~ 359 (388)
+|.|++++|++|+... +++ .++++.+.+|+.....-..+.|...|+
T Consensus 258 ~D~vv~~~g~~~~~~~~~~~gl-~~~~G~i~Vd~~l~t~~~~~Ifa~GD~ 306 (437)
T 3sx6_A 258 VKFGMMIPAFKGVPAVAGVEGL-CNPGGFVLVDEHQRSKKYANIFAAGIA 306 (437)
T ss_dssp CSEEEEECCEECCHHHHTSTTT-BCTTSCBCBCTTSBBSSCTTEEECGGG
T ss_pred EeEEEEcCCCcCchhhhccccc-cCCCCcEEeChhccCCCCCCEEEEEEE
Confidence 9999999999886531 344 444455777764221112344444444
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=5e-21 Score=185.84 Aligned_cols=249 Identities=13% Similarity=0.062 Sum_probs=148.9
Q ss_pred CcEEEECccHHHHHHHHHHHh-hCCCCcEEEEcCCCCCCCcee-eCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 14 PNVCIVGSGPAGFYCAQQILK-LLPQSTVDIYEKLPVPFGLVR-YGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~-~~~g~~v~lie~~~~~gg~~~-~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
++|+|||||+||+++|..|++ ...+.+|+|||+++.++.... ....+......++...+.+.+.+.+++++.+.....
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~~~~~g~~V~vie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~v~~i 81 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKRLVGSKADVKVINKSRFSYFRPALPHVAIGVRDVDELKVDLSEALPEKGIQFQEGTVEKI 81 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHGGGSEEEEEESSSEEEECCSSCCCCSSCCCCCCEEEEHHHHTGGGTCEEEECEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEeCCCCceeccchhhcccCCcCHHHHHHHHHHHHhhCCeEEEEeeEEEE
Confidence 589999999999999999998 446899999999876532210 001112222333444456666777899887744332
Q ss_pred E-----eeecccc-----cccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCC
Q psy4525 92 D-----ISLGDLT-----NAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQG 161 (388)
Q Consensus 92 ~-----~~~~~~~-----~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG 161 (388)
+ +++.+.. ..||+||+|||+.+ +.+++||.+. ..++...+.... ......... .++++|||+|
T Consensus 82 ~~~~~~V~~~~g~~~~~~~~~d~lViAtG~~~-~~~~ipG~~~-~~~~~~~~~~~~----~~~~~l~~~-~~~~vViG~G 154 (409)
T 3h8l_A 82 DAKSSMVYYTKPDGSMAEEEYDYVIVGIGAHL-ATELVKGWDK-YGYSVCEPEFAT----KLREKLESF-QGGNIAIGSG 154 (409)
T ss_dssp ETTTTEEEEECTTSCEEEEECSEEEECCCCEE-CGGGSBTHHH-HCEESSSTTHHH----HHHHHHHHC-CSEEEEEEEC
T ss_pred eCCCCEEEEccCCcccceeeCCEEEECCCCCc-CccCCCChhh-cCcCcCCHHHHH----HHHHHHHHh-cCCeEEEEec
Confidence 2 3333332 47999999999977 4667887542 222221111000 000000001 2567799999
Q ss_pred h-------------------------HHHHHHHHhccCCcccccccCchhHHHhhhcCCC---cEEEEEeecCcccccCC
Q psy4525 162 N-------------------------VAMDVARILLSPVDQLKSTDITEHSLEKLSTSRI---KSVNLVGRRGALQVAFT 213 (388)
Q Consensus 162 ~-------------------------sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~---~~V~~i~r~~~~~~~~~ 213 (388)
. .++|+|..++ ..+++.+. .+|+++.+.+ ....+.
T Consensus 155 ~f~~~~~~~~~~p~~~~p~~~~~~~~~~~e~a~~~~----------------~~l~~~g~~~~~~v~~~~~~~-~l~~~~ 217 (409)
T 3h8l_A 155 PFYQGHNPKPKVPENFVPNADSACEGPVFEMSLMLH----------------GYFKKKGMLDKVHVTVFSPGE-YLSDLS 217 (409)
T ss_dssp CBCCCCSSCCBSCTTSSCCCSCSSCHHHHHHHHHHH----------------HHHHTTTCTTTEEEEEECSSS-SSTTBC
T ss_pred ccccCCCccccccccccCCCCcccCCHHHHHHHHHH----------------HHHHHcCCCCCeEEEEEeCCc-cccccC
Confidence 2 5889887664 22233442 4799999886 322211
Q ss_pred HHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCcee
Q psy4525 214 IKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAIT 293 (388)
Q Consensus 214 ~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~ 293 (388)
+++ .+.+.+.+. +.||++++++.++++..+ +
T Consensus 218 -~~~-------------------------------~~~~~~~l~------------~~gV~~~~~~~v~~i~~~--~--- 248 (409)
T 3h8l_A 218 -PNS-------------------------------RKAVASIYN------------QLGIKLVHNFKIKEIREH--E--- 248 (409)
T ss_dssp -HHH-------------------------------HHHHHHHHH------------HHTCEEECSCCEEEECSS--E---
T ss_pred -HHH-------------------------------HHHHHHHHH------------HCCCEEEcCCceEEECCC--e---
Confidence 111 122223332 579999999999999732 1
Q ss_pred EEEEccCccccCCceeEEecceEEEccccCCccCC--CCCccc-CCCccccCCC
Q psy4525 294 GINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD--SDIPFN-EKSCTVIPKE 344 (388)
Q Consensus 294 ~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~--~~l~~~-~~~gi~l~~~ 344 (388)
+.+ .+++++++|.||+|+|++|+... .+..+. .++.+.+|+.
T Consensus 249 -v~~--------~~g~~~~~D~vi~a~G~~~~~~l~~~~~~l~~~~G~i~vd~~ 293 (409)
T 3h8l_A 249 -IVD--------EKGNTIPADITILLPPYTGNPALKNSTPDLVDDGGFIPTDLN 293 (409)
T ss_dssp -EEE--------TTSCEEECSEEEEECCEECCHHHHTSCGGGSCTTSCBCBBTT
T ss_pred -EEE--------CCCCEEeeeEEEECCCCCccHHHHhccccCcCCCCCEEeCcc
Confidence 333 44568999999999999998643 222443 3334777653
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.81 E-value=2e-19 Score=178.71 Aligned_cols=192 Identities=14% Similarity=0.051 Sum_probs=139.5
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCC--CCC-cchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVA--PDH-PEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~--p~~-~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
++|+||||||||+++|..|++ . .+|+|||+++.+||.+.+... ..+ ....++..++.+.+ ..+++++.++.+.
T Consensus 109 ~dVvIIGgG~aGl~aA~~L~~--~-~~V~vie~~~~~GG~~~~~~~~~~g~~~~~~~~~~~l~~~l-~~~v~~~~~~~v~ 184 (493)
T 1y56_A 109 VDVAIIGGGPAGIGAALELQQ--Y-LTVALIEERGWLGGDMWLKGIKQEGFNKDSRKVVEELVGKL-NENTKIYLETSAL 184 (493)
T ss_dssp ESCCEECCSHHHHHHHHHHTT--T-CCEEEECTTSSSSCSGGGTCSEETTTTEEHHHHHHHHHHTC-CTTEEEETTEEEC
T ss_pred CCEEEECccHHHHHHHHHHHh--c-CCEEEEeCCCCCCCeeeccccccCCCCCCHHHHHHHHHHHH-hcCCEEEcCCEEE
Confidence 589999999999999999999 6 999999999999888754211 111 13455666666656 6789888777652
Q ss_pred E-E-------e-eeccc---ccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEE
Q psy4525 91 Q-D-------I-SLGDL---TNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATIL 158 (388)
Q Consensus 91 ~-~-------~-~~~~~---~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVI 158 (388)
. + + ..+.. ...||+||+|||+.+ +.+++||.+.+++++..++....+. .....+++++||
T Consensus 185 ~i~~~~~~~~~~~~~~~~~~~~~~d~lvlAtGa~~-~~~~~~g~~~~gv~~~~~~~~~~~~-------~~~~~~~~vvVi 256 (493)
T 1y56_A 185 GVFDKGEYFLVPVVRGDKLIEILAKRVVLATGAID-STMLFENNDMPGVFRRDFALEVMNV-------WEVAPGRKVAVT 256 (493)
T ss_dssp CCEECSSSEEEEEEETTEEEEEEESCEEECCCEEE-CCCCCTTTTSTTEEEHHHHHHHHHT-------SCBCSCSEEEEE
T ss_pred EEEcCCcEEEEEEecCCeEEEEECCEEEECCCCCc-cCCCCCCCCCCCEEEcHHHHHHHHh-------cccCCCCEEEEE
Confidence 1 0 1 11222 248999999999987 5788999998999987766532221 112346899999
Q ss_pred cCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccc
Q psy4525 159 GQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGV 238 (388)
Q Consensus 159 GgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~ 238 (388)
|+|++|+| ..|.
T Consensus 257 GgG~~gle--~~l~------------------------------------------------------------------ 268 (493)
T 1y56_A 257 GSKADEVI--QELE------------------------------------------------------------------ 268 (493)
T ss_dssp STTHHHHH--HHHH------------------------------------------------------------------
T ss_pred CCCHHHHH--HHHH------------------------------------------------------------------
Confidence 99999987 2110
Q ss_pred hhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEE
Q psy4525 239 HEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFR 318 (388)
Q Consensus 239 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~ 318 (388)
+.||+++++..++++..+ +.+..+.+ .++++++||.||+
T Consensus 269 -------------------------------~~GV~v~~~~~v~~i~~~--~~v~~v~~--------~~g~~i~aD~Vv~ 307 (493)
T 1y56_A 269 -------------------------------RWGIDYVHIPNVKRVEGN--EKVERVID--------MNNHEYKVDALIF 307 (493)
T ss_dssp -------------------------------HHTCEEEECSSEEEEECS--SSCCEEEE--------TTCCEEECSEEEE
T ss_pred -------------------------------hCCcEEEeCCeeEEEecC--CceEEEEe--------CCCeEEEeCEEEE
Confidence 467889999999999853 44555543 3456899999999
Q ss_pred ccccCCcc
Q psy4525 319 SIGYQSRC 326 (388)
Q Consensus 319 a~G~~p~~ 326 (388)
|+|++|+.
T Consensus 308 a~G~~p~~ 315 (493)
T 1y56_A 308 ADGRRPDI 315 (493)
T ss_dssp CCCEEECC
T ss_pred CCCcCcCc
Confidence 99999997
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-20 Score=184.13 Aligned_cols=239 Identities=13% Similarity=0.174 Sum_probs=134.3
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEEE
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQD 92 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~ 92 (388)
|+|||||||+||+++|..|++..++.+|||||+++...-.. .+.+.......+++...+.+.+++.+++++.+.....+
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~~~~~~~VtlI~~~~~~~~~p~l~~v~~g~~~~~~i~~~~~~~~~~~gv~~i~~~v~~Id 82 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRNLMPDLKITLISDRPYFGFTPAFPHLAMGWRKFEDISVPLAPLLPKFNIEFINEKAESID 82 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTCEEEEECSSSEEECGGGHHHHHHTCSCGGGSEEESTTTGGGGTEEEECSCEEEEE
T ss_pred CcEEEECCCHHHHHHHHHHhccCcCCeEEEEcCCCCCccCccHHHHhcCCCCHHHhhhcHHHHHHHCCcEEEEeEEEEEE
Confidence 58999999999999999999866779999999987532110 00000011122333333445566778999887655443
Q ss_pred -----eeecccc-cccCEEEEeeCCCCCCCCCCCCCC--CCCeeecccccccccCCCCccccCcCCCCCeEEEEcCCh--
Q psy4525 93 -----ISLGDLT-NAYHAVVLTYGADNDKKLNIPGED--GKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGN-- 162 (388)
Q Consensus 93 -----~~~~~~~-~~yd~lvlAtG~~~~~~~~i~g~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~-- 162 (388)
+++++++ ..||+||||||+.+ .+++||.+ ...+.+..+.....+. +......+.++|+|++.
T Consensus 83 ~~~~~V~~~~g~~i~YD~LViAtG~~~--~~~i~G~~e~~~~~~~~~~a~~~~~~------l~~~~~~~~~vv~gg~~gv 154 (430)
T 3hyw_A 83 PDANTVTTQSGKKIEYDYLVIATGPKL--VFGAEGQEENSTSICTAEHALETQKK------LQELYANPGPVVIGAIPGV 154 (430)
T ss_dssp TTTTEEEETTCCEEECSEEEECCCCEE--ECCSBTHHHHSCCCSSHHHHHHHHHH------HHHHHHSCCCEEEEECTTC
T ss_pred CCCCEEEECCCCEEECCEEEEeCCCCc--cCCccCcccCcCCcccHHHHHHHHHH------HHhhccCCceEEEeCCCcE
Confidence 5565554 48999999999875 35677743 1122222111100000 00111234566666552
Q ss_pred ----HHHHHHHHhccCCcccccccCchhHHHhhhcCCC---cEEEEEeecCcccccCCHHHHHHHhcCCCceEEeccccc
Q psy4525 163 ----VAMDVARILLSPVDQLKSTDITEHSLEKLSTSRI---KSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQL 235 (388)
Q Consensus 163 ----sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~---~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~ 235 (388)
.+.|++..+. ..+++.+. .+|+++...+.+. .+..
T Consensus 155 e~~~~~~e~a~~~~----------------~~l~~~g~~~~v~v~~~~~~~~l~-~~~~--------------------- 196 (430)
T 3hyw_A 155 SCFGPAYEFALMLH----------------YELKKRGIRYKVPMTFITSEPYLG-HFGV--------------------- 196 (430)
T ss_dssp CCCHHHHHHHHHHH----------------HHHHHTTCGGGCCEEEECSSSSTT-CTTT---------------------
T ss_pred EEhHHHHHHHHHHH----------------HHHHHhcccccceeeeecccchhh-hccc---------------------
Confidence 2334444332 11222221 2477776554321 1000
Q ss_pred ccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecce
Q psy4525 236 CGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGI 315 (388)
Q Consensus 236 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~ 315 (388)
...+...+.+.+.+. ++||++++++.++++.. +. +.+.+ .+++++++++|+
T Consensus 197 -------~~~~~~~~~l~~~l~------------~~GV~~~~~~~v~~v~~---~~---~~~~~----~~g~~~~i~~d~ 247 (430)
T 3hyw_A 197 -------GGIGASKRLVEDLFA------------ERNIDWIANVAVKAIEP---DK---VIYED----LNGNTHEVPAKF 247 (430)
T ss_dssp -------TCSTTHHHHHHHHHH------------HTTCEEECSCEEEEECS---SE---EEEEC----TTSCEEEEECSE
T ss_pred -------hhhHHHHHHHHHHHH------------hCCeEEEeCceEEEEeC---Cc---eEEEe----eCCCceEeecce
Confidence 000111222223333 67999999999999863 22 22222 246678999999
Q ss_pred EEEccccCCccC
Q psy4525 316 AFRSIGYQSRCV 327 (388)
Q Consensus 316 Vi~a~G~~p~~~ 327 (388)
|++++|++|+..
T Consensus 248 vi~~~G~~~~~~ 259 (430)
T 3hyw_A 248 TMFMPSFQGPEV 259 (430)
T ss_dssp EEEECEEECCHH
T ss_pred EEEeccCCCchH
Confidence 999999999864
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-19 Score=174.38 Aligned_cols=272 Identities=13% Similarity=0.010 Sum_probs=149.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.|+||||||||||+++|.+|++..++.+|+|||+++..+... .+.+.......+++...+.. +...+++++.+..+..
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~~~~~~~Vtlie~~~~~~~~p~~~~v~~g~~~~~~~~~~~~~-~~~~gv~~i~~~v~~i 80 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNETYYTCYMSNEVIGGDRELASLRVGYDG-LRAHGIQVVHDSALGI 80 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSSEECSTTHHHHHHTSSCGGGGEECSHH-HHHTTCEEECSCEEEE
T ss_pred cCEEEEECCcHHHHHHHHHHHhcCcCCeEEEEeCCCCCCCccCHHHHhcCCCCHHHHhhCHHH-HHHCCCEEEEeEEEEE
Confidence 579999999999999999999866678999999986532111 00000001111112111222 2235899887766544
Q ss_pred E-----eeecccc-cccCEEEEeeCCCCCCCCCCCCCCCC----CeeecccccccccCCCCccccCcCCCCCeEEEEcCC
Q psy4525 92 D-----ISLGDLT-NAYHAVVLTYGADNDKKLNIPGEDGK----NIISARSFVGWYNGLPEDASLDLSLDCEEATILGQG 161 (388)
Q Consensus 92 ~-----~~~~~~~-~~yd~lvlAtG~~~~~~~~i~g~~~~----~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG 161 (388)
+ +.+.+.. ..||+||+|||+.+ +.+++||.+.. .++........ ...............+|+++|
T Consensus 81 d~~~~~v~~~~g~~i~yd~LviAtG~~~-~~~~i~G~~e~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~v~~~~ 155 (401)
T 3vrd_B 81 DPDKKLVKTAGGAEFAYDRCVVAPGIDL-LYDKIEGYSEALAAKLPHAWKAGEQT----ALLRRQLESMDDGGVVIIAPP 155 (401)
T ss_dssp ETTTTEEEETTSCEEECSEEEECCCEEE-CGGGSBTCCSGGGGTSCCCSSCSHHH----HHHHHHHHHSCTTCEEEEECC
T ss_pred EccCcEEEecccceeecceeeeccCCcc-ccCCccCchhhcccCccceeccHHHH----HHHHHHHHhcccCCcEEEecC
Confidence 3 4444443 48999999999987 47788886521 11111000000 000000011122334444433
Q ss_pred -------hHHHHHHHHhccCCcccccccCchhHHHhhhc-CCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEeccc
Q psy4525 162 -------NVAMDVARILLSPVDQLKSTDITEHSLEKLST-SRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNE 233 (388)
Q Consensus 162 -------~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~-~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~ 233 (388)
..+.|++..++ ..+++ ....+|+++.+.+.+... +.
T Consensus 156 ~~~i~~~~a~~e~~~~~a----------------~~~~~~~~~~~v~i~~~~~~~~~~---~~----------------- 199 (401)
T 3vrd_B 156 APPFRCPPGPYERASQIA----------------HYLKAHKSKSKVIILDNSQTFSKQ---AQ----------------- 199 (401)
T ss_dssp SSSCBCTTHHHHHHHHHH----------------HHHHHHCTTCEEEEECSSSSCTTH---HH-----------------
T ss_pred CccEEeehHHHHHHHHHH----------------HHHHhcCCCCEEEEEccccccccc---cc-----------------
Confidence 34555555443 11111 223579998877654211 11
Q ss_pred ccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEec
Q psy4525 234 QLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPS 313 (388)
Q Consensus 234 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~ 313 (388)
+.+.+...... .+.+.||+++++..+..+..+.+. ..++ +++++++++
T Consensus 200 ------------------~~~~~~~~~~~----~l~~~gi~v~~~~~v~~v~~~~~~--~~v~--------~~~g~~i~~ 247 (401)
T 3vrd_B 200 ------------------FTKGWERLYGF----GTENALIEWHPGPDAAVVKTDTEA--MTVE--------TSFGETFKA 247 (401)
T ss_dssp ------------------HHHHHHHHSCT----TSTTCSEEEECTTTTCEEEEETTT--TEEE--------ETTSCEEEC
T ss_pred ------------------ccHHHHHHHHH----HHHhcCcEEEeCceEEEEEecccc--eEEE--------cCCCcEEEe
Confidence 11111111111 234789999999999888764322 2233 466678999
Q ss_pred ceEEEccccCCccCC--CCCcccCCCccccCCCCCCeec-chhhHHhHH
Q psy4525 314 GIAFRSIGYQSRCVD--SDIPFNEKSCTVIPKEGVPVVT-WEGWKAIDK 359 (388)
Q Consensus 314 D~Vi~a~G~~p~~~~--~~l~~~~~~gi~l~~~~~~~~~-~~~w~~~~~ 359 (388)
|+|++++|.+|+.+. +++ .++++.+.+|++..+.+. .+.|...|+
T Consensus 248 D~vi~~~g~~~~~~~~~~gl-~~~~G~i~VD~~tl~~t~~p~VfAiGDv 295 (401)
T 3vrd_B 248 AVINLIPPQRAGKIAQSASL-TNDSGWCPVDIRTFESSLQPGIHVIGDA 295 (401)
T ss_dssp SEEEECCCEEECHHHHHTTC-CCTTSSBCBCTTTCBBSSSTTEEECGGG
T ss_pred eEEEEecCcCCchhHhhccc-cccCCCEEECCCcceecCCCCEEEeccc
Confidence 999999999998642 444 244555888876543332 345555553
|
| >3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.5e-13 Score=126.47 Aligned_cols=139 Identities=17% Similarity=0.061 Sum_probs=84.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeC-CCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYG-VAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g-~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
..+||+||||||||++||.+|++...|++|+|||+.+.+||.+.++ +.+....... ....++++.++++..+...
T Consensus 64 ~~~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~~~~~~~~~~~l~~---~~~~~~~e~Gv~~~~~~~~- 139 (326)
T 3fpz_A 64 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRK---PAHLFLQELEIPYEDEGDY- 139 (326)
T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCCSTTCCCEEEET---TTHHHHHHTTCCCEECSSE-
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEEeCCccCCHHHHHH---HHHHHHHHcCCEEEECCcc-
Confidence 4579999999999999999997644799999999999999988653 2222221111 1122334456655433211
Q ss_pred EEeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHH
Q psy4525 91 QDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARI 170 (388)
Q Consensus 91 ~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~ 170 (388)
....+.++++++..+ +.+.++|..........++... . .....+++++|||+|++++|.|..
T Consensus 140 --------~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~-------~--~~~~~~~~v~viggg~~av~~a~~ 201 (326)
T 3fpz_A 140 --------VVVKHAALFISTVLS-KVLQLPNVKLFNATCVEDLVTR-------P--PTEKGEVTVAGVVTNWTLVTQAHG 201 (326)
T ss_dssp --------EEESCHHHHHHHHHH-HHHTSTTEEEETTEEEEEEEEE-------S--SCSSSSCEEEEEEEEEHHHHTCTT
T ss_pred --------eecceeEEEEcchhh-hccccccceeecccccceeecc-------C--CcccCCCEEEEEccCceeeehhhh
Confidence 112233344555444 3556666543222222222211 0 233457899999999999999885
Q ss_pred hc
Q psy4525 171 LL 172 (388)
Q Consensus 171 L~ 172 (388)
+.
T Consensus 202 ~~ 203 (326)
T 3fpz_A 202 TQ 203 (326)
T ss_dssp SS
T ss_pred hh
Confidence 54
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=3.6e-09 Score=89.92 Aligned_cols=96 Identities=14% Similarity=0.168 Sum_probs=69.2
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCc--e--e-eCCCCCCcchhHHHHHHHHhhcCCCcEEEceEE
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGL--V--R-YGVAPDHPEVKNVINTFTKTGDNPRVNFYGNIC 88 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~--~--~-~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 88 (388)
++|+|||||++|+.+|..|.+ .|.+|+++|+.+..... + . .+. |......++...+.+.+++.+++++.+ .
T Consensus 2 ~~vvIIGgG~~Gl~~A~~l~~--~g~~v~lie~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~gv~v~~~-~ 77 (180)
T 2ywl_A 2 WDVIVVGGGPSGLSAALFLAR--AGLKVLVLDGGRSKVKGVSRVPNYPGL-LDEPSGEELLRRLEAHARRYGAEVRPG-V 77 (180)
T ss_dssp EEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSCCTTTTCSCCCCSTTC-TTCCCHHHHHHHHHHHHHHTTCEEEEC-C
T ss_pred CeEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCcccCchhhhccCCC-cCCCCHHHHHHHHHHHHHHcCCEEEeC-E
Confidence 589999999999999999999 89999999988632211 0 0 111 222345678888888888889999877 4
Q ss_pred EEE--------EeeecccccccCEEEEeeCCCC
Q psy4525 89 LGQ--------DISLGDLTNAYHAVVLTYGADN 113 (388)
Q Consensus 89 v~~--------~~~~~~~~~~yd~lvlAtG~~~ 113 (388)
+.. .+..++....+|.||+|+|..+
T Consensus 78 v~~i~~~~~~~~v~~~~g~i~ad~vI~A~G~~~ 110 (180)
T 2ywl_A 78 VKGVRDMGGVFEVETEEGVEKAERLLLCTHKDP 110 (180)
T ss_dssp CCEEEECSSSEEEECSSCEEEEEEEEECCTTCC
T ss_pred EEEEEEcCCEEEEEECCCEEEECEEEECCCCCC
Confidence 421 1333333447999999999876
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=7e-10 Score=106.87 Aligned_cols=98 Identities=15% Similarity=0.269 Sum_probs=67.6
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC--------ce---eeCCCCC--------C------------
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG--------LV---RYGVAPD--------H------------ 62 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg--------~~---~~g~~p~--------~------------ 62 (388)
+||+|||||++|+++|..|++ .|.+|+|+|+.+.+|+ .+ +.++.|. +
T Consensus 5 ~dViIIGgG~aGl~aA~~la~--~G~~V~vlEk~~~~g~~~~~sggg~cn~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 82 (401)
T 2gqf_A 5 SENIIIGAGAAGLFCAAQLAK--LGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNWD 82 (401)
T ss_dssp CSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHHH
T ss_pred CCEEEECCcHHHHHHHHHHHh--CCCCEEEEeCCCCCchhcEEcCCCeEEccCCccCHHHhccCCHHHHHHHHHhCCHHH
Confidence 699999999999999999999 8999999999987643 22 1111110 0
Q ss_pred ---------------------c--chhHHHHHHHHhhcCCCcEEEceEEEEEE------------eeecccccccCEEEE
Q psy4525 63 ---------------------P--EVKNVINTFTKTGDNPRVNFYGNICLGQD------------ISLGDLTNAYHAVVL 107 (388)
Q Consensus 63 ---------------------~--~~~~~~~~~~~~~~~~~i~~~~~~~v~~~------------~~~~~~~~~yd~lvl 107 (388)
+ ...++.+.+.+.+++.|++++.++.+..- +...+....+|+||+
T Consensus 83 ~~~~~~~~Gi~~~~~~~g~~~p~~~~~~l~~~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~~~v~~~~g~i~ad~VVl 162 (401)
T 2gqf_A 83 FISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLIV 162 (401)
T ss_dssp HHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEEE
T ss_pred HHHHHHhCCCceEECcCCEEccCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEcccCcCCCeEEEEECCCEEECCEEEE
Confidence 0 23445566666777778998877665221 222222347899999
Q ss_pred eeCCCC
Q psy4525 108 TYGADN 113 (388)
Q Consensus 108 AtG~~~ 113 (388)
|||+.+
T Consensus 163 AtG~~s 168 (401)
T 2gqf_A 163 ATGGLS 168 (401)
T ss_dssp CCCCSS
T ss_pred CCCCcc
Confidence 999876
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.85 E-value=4e-09 Score=102.06 Aligned_cols=101 Identities=20% Similarity=0.316 Sum_probs=69.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce--------ee---CCC--------CCC---------
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV--------RY---GVA--------PDH--------- 62 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~--------~~---g~~--------p~~--------- 62 (388)
...+||+|||||+||+++|..|++ .|.+|+|+|+.+.+|+.+ +. ... |.+
T Consensus 25 ~~~~dViIIGgG~AGl~aA~~La~--~G~~V~llEk~~~~g~~~~~sGgg~~n~t~~~~~~~~~~~~~~~~~~~~l~~~~ 102 (417)
T 3v76_A 25 AEKQDVVIIGAGAAGMMCAIEAGK--RGRRVLVIDHARAPGEKIRISGGGRCNFTNIHASPRNFLSGNPHFCKSALARYR 102 (417)
T ss_dssp ---CCEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCHHHHHSGGGTCEEEETTCSGGGEEESSTTTTHHHHHHSC
T ss_pred CCCCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCceeEEcCCCceeccCCCCCHHHHhhcCHHHHHHHHHhcC
Confidence 345799999999999999999999 899999999998775432 10 000 100
Q ss_pred --------------------------cchhHHHHHHHHhhcCCCcEEEceEEEEEE--------eeecccccccCEEEEe
Q psy4525 63 --------------------------PEVKNVINTFTKTGDNPRVNFYGNICLGQD--------ISLGDLTNAYHAVVLT 108 (388)
Q Consensus 63 --------------------------~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~--------~~~~~~~~~yd~lvlA 108 (388)
....++.+.+.+.+++.|++++.++.|... +...+....+|+||+|
T Consensus 103 ~~~~~~~~~~~Gi~~~~~~~g~~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g~i~ad~VIlA 182 (417)
T 3v76_A 103 PQDFVALVERHGIGWHEKTLGQLFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAGTVDAASLVVA 182 (417)
T ss_dssp HHHHHHHHHHTTCCEEECSTTEEEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTEEEEESEEEEC
T ss_pred HHHHHHHHHHcCCCcEEeeCCEEeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCcEEEeeEEEEC
Confidence 012355666666777778999887665321 3333334478999999
Q ss_pred eCCCC
Q psy4525 109 YGADN 113 (388)
Q Consensus 109 tG~~~ 113 (388)
||..+
T Consensus 183 tG~~S 187 (417)
T 3v76_A 183 SGGKS 187 (417)
T ss_dssp CCCSS
T ss_pred CCCcc
Confidence 99876
|
| >2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=9.9e-09 Score=87.20 Aligned_cols=128 Identities=8% Similarity=-0.016 Sum_probs=76.5
Q ss_pred eEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEeccc
Q psy4525 154 EATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNE 233 (388)
Q Consensus 154 ~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~ 233 (388)
+|+|||||.+|+++|..|+ +.+ .+|+++.+.+....... .+...|.+
T Consensus 3 ~vvIIGgG~~Gl~~A~~l~--------------------~~g-~~v~lie~~~~~~~~~~-----~~~~~~~~------- 49 (180)
T 2ywl_A 3 DVIVVGGGPSGLSAALFLA--------------------RAG-LKVLVLDGGRSKVKGVS-----RVPNYPGL------- 49 (180)
T ss_dssp EEEEECCSHHHHHHHHHHH--------------------HTT-CCEEEEECSCCTTTTCS-----CCCCSTTC-------
T ss_pred eEEEECCCHHHHHHHHHHH--------------------HCC-CcEEEEeCCCCcccCch-----hhhccCCC-------
Confidence 6999999999999999886 234 46999998864321100 00000000
Q ss_pred ccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEec
Q psy4525 234 QLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPS 313 (388)
Q Consensus 234 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~ 313 (388)
+.. .....+...+.+.+ .+.|++++++ .++++..++++ ..++ +.++ ++++
T Consensus 50 --------~~~--~~~~~~~~~l~~~~--------~~~gv~v~~~-~v~~i~~~~~~--~~v~--------~~~g-~i~a 99 (180)
T 2ywl_A 50 --------LDE--PSGEELLRRLEAHA--------RRYGAEVRPG-VVKGVRDMGGV--FEVE--------TEEG-VEKA 99 (180)
T ss_dssp --------TTC--CCHHHHHHHHHHHH--------HHTTCEEEEC-CCCEEEECSSS--EEEE--------CSSC-EEEE
T ss_pred --------cCC--CCHHHHHHHHHHHH--------HHcCCEEEeC-EEEEEEEcCCE--EEEE--------ECCC-EEEE
Confidence 000 00122222222222 1568999999 99999865332 2232 3344 7999
Q ss_pred ceEEEccccCCccC-CCCCcccCCCccccCCCC
Q psy4525 314 GIAFRSIGYQSRCV-DSDIPFNEKSCTVIPKEG 345 (388)
Q Consensus 314 D~Vi~a~G~~p~~~-~~~l~~~~~~gi~l~~~~ 345 (388)
|.||+|+|.+|+.. ..+++++ ++.+.+|+..
T Consensus 100 d~vI~A~G~~~~~~~~~g~~~~-~g~i~vd~~~ 131 (180)
T 2ywl_A 100 ERLLLCTHKDPTLPSLLGLTRR-GAYIDTDEGG 131 (180)
T ss_dssp EEEEECCTTCCHHHHHHTCCEE-TTEECCCTTC
T ss_pred CEEEECCCCCCCccccCCCCcc-CceEEeCCCC
Confidence 99999999999753 2467777 4446566543
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=98.71 E-value=1.1e-07 Score=84.37 Aligned_cols=98 Identities=14% Similarity=0.030 Sum_probs=65.0
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCC--------------cchhHHHHHHHHhhcC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDH--------------PEVKNVINTFTKTGDN 78 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~--------------~~~~~~~~~~~~~~~~ 78 (388)
.++|+|||||++|+++|..|++ .|.+|+++|+.....|.+.....+.. +....+...+.+.+++
T Consensus 3 ~~dVvVVGgG~aGl~aA~~la~--~g~~v~lie~~~~~~G~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~l~~~~~~ 80 (232)
T 2cul_A 3 AYQVLIVGAGFSGAETAFWLAQ--KGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEG 80 (232)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHT
T ss_pred CCCEEEECcCHHHHHHHHHHHH--CCCCEEEEecCCCcCCcccCccccccchhhHHhhhccCCCCCHHHHHHHHHHHHHc
Confidence 4799999999999999999999 89999999998433332211000000 0123556667777777
Q ss_pred C-CcEEEceEEEEE---------Eeeeccc-ccccCEEEEeeCCCC
Q psy4525 79 P-RVNFYGNICLGQ---------DISLGDL-TNAYHAVVLTYGADN 113 (388)
Q Consensus 79 ~-~i~~~~~~~v~~---------~~~~~~~-~~~yd~lvlAtG~~~ 113 (388)
. +++++.. .+.. .+...+. ...+|.||+|||...
T Consensus 81 ~~gv~i~~~-~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s 125 (232)
T 2cul_A 81 LRPLHLFQA-TATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFL 125 (232)
T ss_dssp CTTEEEEEC-CEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred CCCcEEEEe-EEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCCh
Confidence 6 8888743 3321 1223333 347899999999866
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=98.70 E-value=7.6e-08 Score=88.12 Aligned_cols=98 Identities=23% Similarity=0.254 Sum_probs=65.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCC-CCcEEEEcCCCCCCCc-eee--------------------CCCCCC--------
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLP-QSTVDIYEKLPVPFGL-VRY--------------------GVAPDH-------- 62 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~-g~~v~lie~~~~~gg~-~~~--------------------g~~p~~-------- 62 (388)
.+||+|||||++|+++|..|++ . |.+|+|+|+.+.++|. |.. |+ |..
T Consensus 39 ~~dVvIIGgG~aGl~aA~~la~--~~G~~V~viEk~~~~gg~~~~~~~~~~~~~~~~~~~~~l~~~G~-~~~~~~~~~~~ 115 (284)
T 1rp0_A 39 ETDVVVVGAGSAGLSAAYEISK--NPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRKPAHLFLDEIGV-AYDEQDTYVVV 115 (284)
T ss_dssp EEEEEEECCSHHHHHHHHHHHT--STTSCEEEEESSSSCCTTTTCCSTTCCCEEEETTTHHHHHHHTC-CCEECSSEEEE
T ss_pred ccCEEEECccHHHHHHHHHHHH--cCCCeEEEEECCCCCCCceecCCcchHHHHcCcHHHHHHHHcCC-CcccCCCEEEe
Confidence 4699999999999999999998 6 9999999999877643 221 11 110
Q ss_pred cchhHHHHHHHHhhc-CCCcEEEceEEEEEE---------eeec---------c------cccccCEEEEeeCCCC
Q psy4525 63 PEVKNVINTFTKTGD-NPRVNFYGNICLGQD---------ISLG---------D------LTNAYHAVVLTYGADN 113 (388)
Q Consensus 63 ~~~~~~~~~~~~~~~-~~~i~~~~~~~v~~~---------~~~~---------~------~~~~yd~lvlAtG~~~ 113 (388)
....++...+.+.+. ..|++++.++.+..- +... + ....+|.||+|||..+
T Consensus 116 ~~~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s 191 (284)
T 1rp0_A 116 KHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDG 191 (284)
T ss_dssp SCHHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSS
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCch
Confidence 023445555555554 469999887765321 1111 1 1236899999999765
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=98.68 E-value=5.5e-08 Score=96.27 Aligned_cols=101 Identities=15% Similarity=0.127 Sum_probs=71.0
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCC----------------C-------CcchhH
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAP----------------D-------HPEVKN 67 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p----------------~-------~~~~~~ 67 (388)
...++|+||||||+|+++|..|++ .|.+|+|||+.+.+|+....+..| . .....+
T Consensus 90 ~~~~dVvIVGgG~aGl~aA~~La~--~G~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 167 (497)
T 2bry_A 90 CTNTKCLVVGAGPCGLRAAVELAL--LGARVVLVEKRIKFSRHNVLHLWPFTIHDLRALGAKKFYGRFCTGTLDHISIRQ 167 (497)
T ss_dssp TTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCSSCCCCCEEECCHHHHHHHHTTTHHHHCTTTTCTTCCEEEHHH
T ss_pred cCCCCEEEECccHHHHHHHHHHHH--CCCeEEEEEeccccCCCCcccCChhHHHHHHHcCCccccccccccccccCCHHH
Confidence 356899999999999999999999 899999999998776432111111 0 011255
Q ss_pred HHHHHHHhhcCCCcEEEceEEEEE-----------Eeee--c-cc---ccccCEEEEeeCCCC
Q psy4525 68 VINTFTKTGDNPRVNFYGNICLGQ-----------DISL--G-DL---TNAYHAVVLTYGADN 113 (388)
Q Consensus 68 ~~~~~~~~~~~~~i~~~~~~~v~~-----------~~~~--~-~~---~~~yd~lvlAtG~~~ 113 (388)
+...+.+.+.+.+++++.++.+.. .+++ . ++ ...+|+||+|+|..+
T Consensus 168 l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~ad~VV~A~G~~S 230 (497)
T 2bry_A 168 LQLLLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEFDVLISAAGGKF 230 (497)
T ss_dssp HHHHHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCBSEEEECCCTTC
T ss_pred HHHHHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEcCEEEECCCCCc
Confidence 666677777778999988776532 1222 1 22 237899999999876
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=5.9e-08 Score=92.53 Aligned_cols=101 Identities=15% Similarity=0.077 Sum_probs=68.6
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCc---e--e---------eCCC-----------------
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGL---V--R---------YGVA----------------- 59 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~---~--~---------~g~~----------------- 59 (388)
+..++|+|||||++|+++|..|++ .|.+|+|+|+.+.+++. + . .|+.
T Consensus 9 m~~~dVvIVGaG~aGl~~A~~L~~--~G~~v~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~ 86 (379)
T 3alj_A 9 GKTRRAEVAGGGFAGLTAAIALKQ--NGWDVRLHEKSSELRAFGAGIYLWHNGLRVLEGLGALDDVLQGSHTPPTYETWM 86 (379)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSCCCCSSEEEEEHHHHHHHHHTTCHHHHHTTCBCCSCEEEEE
T ss_pred CCCCeEEEECCCHHHHHHHHHHHH--CCCCEEEEecCCCCCCCCceEEeCccHHHHHHHcCCHHHHHhhCCCccceEEEe
Confidence 346899999999999999999999 89999999998765421 0 0 0000
Q ss_pred -------------CC-CcchhHHHHHHHHhhcCCCcEEEceEEEEE-----Eeeecccc-cccCEEEEeeCCCC
Q psy4525 60 -------------PD-HPEVKNVINTFTKTGDNPRVNFYGNICLGQ-----DISLGDLT-NAYHAVVLTYGADN 113 (388)
Q Consensus 60 -------------p~-~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~-----~~~~~~~~-~~yd~lvlAtG~~~ 113 (388)
|. ......+...+.+.+.+.|++++.++.+.. .++..++. ..+|.||.|+|..+
T Consensus 87 ~g~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~v~~~~g~~~~ad~vV~AdG~~s 160 (379)
T 3alj_A 87 HNKSVSKETFNGLPWRIMTRSHLHDALVNRARALGVDISVNSEAVAADPVGRLTLQTGEVLEADLIVGADGVGS 160 (379)
T ss_dssp TTEEEEEECGGGCCEEEEEHHHHHHHHHHHHHHTTCEEESSCCEEEEETTTEEEETTSCEEECSEEEECCCTTC
T ss_pred CCceeeeccCCCCceEEECHHHHHHHHHHHHHhcCCEEEeCCEEEEEEeCCEEEECCCCEEEcCEEEECCCccH
Confidence 00 011245566666667667899998876533 23343333 47999999999766
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=98.62 E-value=1.1e-07 Score=95.77 Aligned_cols=35 Identities=20% Similarity=0.123 Sum_probs=32.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
..+||+|||||+||++||..+++ .|.+|+|+|+.+
T Consensus 27 ~~yDVIVIGgG~AGl~AAlaLAr--~G~kVlLIEk~~ 61 (651)
T 3ces_A 27 DPFDVIIIGGGHAGTEAAMAAAR--MGQQTLLLTHNI 61 (651)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESCG
T ss_pred CcCCEEEECChHHHHHHHHHHHh--CCCCEEEEeecc
Confidence 35799999999999999999999 899999999874
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=98.60 E-value=3.5e-08 Score=88.26 Aligned_cols=40 Identities=25% Similarity=0.396 Sum_probs=37.5
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
..+|+||||||||++||..|++ .|++|+|||+.+.+||.+
T Consensus 2 t~dV~IIGaGpaGL~aA~~La~--~G~~V~v~Ek~~~~GG~~ 41 (336)
T 3kkj_A 2 TVPIAIIGTGIAGLSAAQALTA--AGHQVHLFDKSRGSGGRM 41 (336)
T ss_dssp CCCEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCGGG
T ss_pred CCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCCCCcc
Confidence 3689999999999999999999 899999999999999865
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.2e-08 Score=94.28 Aligned_cols=37 Identities=30% Similarity=0.266 Sum_probs=34.0
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
.+||+||||||||+++|..|++ .|++|+|||+.+.++
T Consensus 4 ~yDViIVGaGpaGl~~A~~La~--~G~~V~v~Er~~~~~ 40 (397)
T 3oz2_A 4 TYDVLVVGGGPGGSTAARYAAK--YGLKTLMIEKRPEIG 40 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSTT
T ss_pred CCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCC
Confidence 4799999999999999999999 899999999987654
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.54 E-value=1.7e-07 Score=93.48 Aligned_cols=36 Identities=17% Similarity=0.239 Sum_probs=33.0
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
.+||+||||||+|+++|..|++ .|++|+|+|+.+.+
T Consensus 107 ~~DVVIVGgGpaGL~aA~~La~--~G~kV~VlEr~~~~ 142 (549)
T 3nlc_A 107 TERPIVIGFGPCGLFAGLVLAQ--MGFNPIIVERGKEV 142 (549)
T ss_dssp CCCCEEECCSHHHHHHHHHHHH--TTCCCEEECSSCCH
T ss_pred CCCEEEECcCHHHHHHHHHHHH--CCCeEEEEEccCcc
Confidence 4799999999999999999999 89999999998643
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.49 E-value=5.6e-08 Score=95.61 Aligned_cols=31 Identities=26% Similarity=0.412 Sum_probs=29.9
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
||+|||+|+||+++|..|++ .|.+|+|+|+.
T Consensus 1 DVvVIG~G~AGl~aA~~la~--~G~~V~viek~ 31 (472)
T 2e5v_A 1 MIYIIGSGIAGLSAGVALRR--AGKKVTLISKR 31 (472)
T ss_dssp CEEEECCSHHHHHHHHHHHH--TTCCEEEECSS
T ss_pred CEEEECCCHHHHHHHHHHHH--CCCCEEEEeCC
Confidence 69999999999999999999 89999999998
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=3.1e-07 Score=89.65 Aligned_cols=39 Identities=21% Similarity=0.289 Sum_probs=35.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
..+||+|||||++|+++|..|++ .|.+|+|+|+.+.+|+
T Consensus 25 ~~~dVvIIGgG~aGl~aA~~la~--~G~~V~llEk~~~~g~ 63 (447)
T 2i0z_A 25 MHYDVIVIGGGPSGLMAAIGAAE--EGANVLLLDKGNKLGR 63 (447)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCH
T ss_pred CCCCEEEECCcHHHHHHHHHHHH--CCCCEEEEECCCCCCc
Confidence 34799999999999999999999 8999999999876653
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.3e-07 Score=89.49 Aligned_cols=99 Identities=20% Similarity=0.173 Sum_probs=66.0
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC----CCceee---------CC---------C-----------
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP----FGLVRY---------GV---------A----------- 59 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~----gg~~~~---------g~---------~----------- 59 (388)
.+||+|||||++|+++|..|++ .|.+|+|+|+.+.+ |..+.. |+ .
T Consensus 5 ~~dVvIIGgG~aGl~~A~~La~--~G~~V~v~E~~~~~~~~~g~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 82 (421)
T 3nix_A 5 KVDVLVIGAGPAGTVAASLVNK--SGFKVKIVEKQKFPRFVIGESLLPRCMEHLDEAGFLDAVKAQGFQQKFGAKFVRGK 82 (421)
T ss_dssp EEEEEEECCSHHHHHHHHHHHT--TTCCEEEECSSCSSCCCSCCBCCGGGHHHHHHTTCHHHHHHTTCEEECEEEEEETT
T ss_pred cCcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCCCCCCcccCcccHhHHHHHHHcCChHHHHHcCCcccCCcEEEeCC
Confidence 3799999999999999999999 89999999998632 211100 00 0
Q ss_pred -------C-------C---CcchhHHHHHHHHhhcCCCcEEEceEEEEEE----------eeecccc---cccCEEEEee
Q psy4525 60 -------P-------D---HPEVKNVINTFTKTGDNPRVNFYGNICLGQD----------ISLGDLT---NAYHAVVLTY 109 (388)
Q Consensus 60 -------p-------~---~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~----------~~~~~~~---~~yd~lvlAt 109 (388)
+ . ......+...+.+.+.+.|++++.++.+... +...++. ..+|.||.|+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~ 162 (421)
T 3nix_A 83 EIADFNFSDQFSNGWNWTWQVPRGNFDKTLADEAARQGVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDAS 162 (421)
T ss_dssp EEEEEETTSCSSCSCCCEEECCHHHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECC
T ss_pred eeEEEeehhhcCCCCCceeEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECC
Confidence 0 0 0123455666666676678999988765321 2223333 4789999999
Q ss_pred CCCC
Q psy4525 110 GADN 113 (388)
Q Consensus 110 G~~~ 113 (388)
|..+
T Consensus 163 G~~s 166 (421)
T 3nix_A 163 GYGR 166 (421)
T ss_dssp GGGC
T ss_pred CCch
Confidence 9764
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=98.41 E-value=1.5e-06 Score=81.01 Aligned_cols=40 Identities=30% Similarity=0.472 Sum_probs=35.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
.+||+|||||++|+++|..|++..+|.+|+|+|+.+.+||
T Consensus 79 ~~DVvIVGgG~AGL~aA~~La~~~~G~~V~LiEk~~~~GG 118 (344)
T 3jsk_A 79 ETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGG 118 (344)
T ss_dssp BCSEEEECCSHHHHHHHHHHHHHCTTSCEEEEESSSSCCT
T ss_pred cCCEEEECccHHHHHHHHHHHhcCCCCEEEEEeCCCccCC
Confidence 4799999999999999999999434999999999987763
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.6e-06 Score=82.99 Aligned_cols=99 Identities=16% Similarity=0.066 Sum_probs=67.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC--C--c-ee---------e----------------------
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF--G--L-VR---------Y---------------------- 56 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g--g--~-~~---------~---------------------- 56 (388)
.++|+|||||++|+++|..|++ .|.+|+|+|+.+.+. + . +. .
T Consensus 6 ~~dVvIVGaG~aGl~~A~~L~~--~G~~V~viE~~~~~~~~~~~~~l~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 83 (399)
T 2x3n_A 6 HIDVLINGCGIGGAMLAYLLGR--QGHRVVVVEQARRERAINGADLLKPAGIRVVEAAGLLAEVTRRGGRVRHELEVYHD 83 (399)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSCCC---CCCCEECHHHHHHHHHTTCHHHHHHTTCEEECEEEEEET
T ss_pred cCCEEEECcCHHHHHHHHHHHh--CCCcEEEEeCCCCCCccCceeeECchHHHHHHHcCcHHHHHHhCCCcceeEEEeCC
Confidence 3699999999999999999999 899999999976541 0 0 00 0
Q ss_pred CC----CCC----------CcchhHHHHHHHHhhcCC-CcEEEceEEEEE----------Eeeeccc-ccccCEEEEeeC
Q psy4525 57 GV----APD----------HPEVKNVINTFTKTGDNP-RVNFYGNICLGQ----------DISLGDL-TNAYHAVVLTYG 110 (388)
Q Consensus 57 g~----~p~----------~~~~~~~~~~~~~~~~~~-~i~~~~~~~v~~----------~~~~~~~-~~~yd~lvlAtG 110 (388)
|. .+. ......+...+.+.+.+. |++++.++.+.. .++..++ ...+|.||.|+|
T Consensus 84 g~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG 163 (399)
T 2x3n_A 84 GELLRYFNYSSVDARGYFILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADG 163 (399)
T ss_dssp TEEEEEEETTSSCGGGCEEECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCC
T ss_pred CCEEEecchHHhcccCccccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCC
Confidence 00 000 012345667777778777 899988766532 2333333 237899999999
Q ss_pred CCC
Q psy4525 111 ADN 113 (388)
Q Consensus 111 ~~~ 113 (388)
..+
T Consensus 164 ~~s 166 (399)
T 2x3n_A 164 IAS 166 (399)
T ss_dssp TTC
T ss_pred CCh
Confidence 765
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=98.33 E-value=1.7e-06 Score=87.01 Aligned_cols=40 Identities=38% Similarity=0.393 Sum_probs=36.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCc
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGL 53 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~ 53 (388)
..+||+|||||+||+++|..|++ .|.+|+|+|+.+.+||.
T Consensus 125 ~~~DVvVVGaG~aGl~aA~~la~--~G~~V~vlEk~~~~gg~ 164 (571)
T 1y0p_A 125 DTVDVVVVGSGGAGFSAAISATD--SGAKVILIEKEPVIGGN 164 (571)
T ss_dssp EECSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTT
T ss_pred CCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCc
Confidence 35799999999999999999999 89999999999877653
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=98.31 E-value=2.8e-06 Score=84.81 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=33.0
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
.++|+||||||+|+++|..|++ .|.+|+|||+.+.+
T Consensus 5 ~~dVlIVGaG~aGl~~A~~La~--~G~~v~viEr~~~~ 40 (535)
T 3ihg_A 5 EVDVLVVGAGLGGLSTAMFLAR--QGVRVLVVERRPGL 40 (535)
T ss_dssp SEEEEEECCSHHHHHHHHHHHT--TTCCEEEECSSSSC
T ss_pred cCcEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCC
Confidence 4799999999999999999999 89999999998643
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=98.30 E-value=1.3e-06 Score=87.75 Aligned_cols=99 Identities=16% Similarity=0.218 Sum_probs=64.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC-------------------Cce------------e-eC-C-
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF-------------------GLV------------R-YG-V- 58 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g-------------------g~~------------~-~g-~- 58 (388)
.++|+||||||+|+++|..|++ .|++|+|||+.+.+. |.+ . ++ .
T Consensus 49 ~~DVvIVGaG~aGL~~A~~La~--~G~~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~~l~~~~~~~~~~~~~~~~ 126 (570)
T 3fmw_A 49 TTDVVVVGGGPVGLMLAGELRA--GGVGALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLDRFLEGTQVAKGLPFAGIF 126 (570)
T ss_dssp --CEEEECCSHHHHHHHHHHHH--TTCCEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHHHHTTSCCBCSBCCBTTBC
T ss_pred CCCEEEECcCHHHHHHHHHHHH--CCCCEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChHHHHhcCcccCCceeCCcc
Confidence 4799999999999999999999 899999999876532 111 0 10 0
Q ss_pred --C----------CC--CcchhHHHHHHHHhhcCCCcEEEceEEEEE--------Eeee--ccc--ccccCEEEEeeCCC
Q psy4525 59 --A----------PD--HPEVKNVINTFTKTGDNPRVNFYGNICLGQ--------DISL--GDL--TNAYHAVVLTYGAD 112 (388)
Q Consensus 59 --~----------p~--~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~--------~~~~--~~~--~~~yd~lvlAtG~~ 112 (388)
. |. ......+...+.+.+.+.|++++.++.+.. .+++ .++ ...+|+||.|.|..
T Consensus 127 ~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~~~gv~i~~~~~v~~l~~~~~~v~v~~~~~~G~~~~~a~~vV~ADG~~ 206 (570)
T 3fmw_A 127 TQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAREAGAEIPRGHEVTRLRQDAEAVEVTVAGPSGPYPVRARYGVGCDGGR 206 (570)
T ss_dssp TTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHHHHTEECCBSCEEEECCBCSSCEEEEEEETTEEEEEEESEEEECSCSS
T ss_pred cccccccccCCCCCeeEEeCHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCeEEEEEEeCCCcEEEEeCEEEEcCCCC
Confidence 0 00 012344555666666666888887776532 1333 333 34799999999976
Q ss_pred C
Q psy4525 113 N 113 (388)
Q Consensus 113 ~ 113 (388)
+
T Consensus 207 S 207 (570)
T 3fmw_A 207 S 207 (570)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=98.29 E-value=1.5e-06 Score=86.34 Aligned_cols=34 Identities=21% Similarity=0.295 Sum_probs=32.1
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
.++|+|||||++|+++|..|++ .|++|+|||+.+
T Consensus 7 ~~dVvIVGgG~aGl~aA~~La~--~G~~V~liE~~~ 40 (512)
T 3e1t_A 7 VFDLIVIGGGPGGSTLASFVAM--RGHRVLLLEREA 40 (512)
T ss_dssp EEEEEEECCSHHHHHHHHHHHT--TTCCEEEECSSC
T ss_pred cCCEEEECcCHHHHHHHHHHHh--CCCCEEEEccCC
Confidence 4799999999999999999999 899999999986
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=98.28 E-value=3.2e-06 Score=80.94 Aligned_cols=37 Identities=27% Similarity=0.521 Sum_probs=33.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
..++|+||||||+|+++|..|++ .|++|+|||+.+.+
T Consensus 4 ~~~~V~IVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~~ 40 (397)
T 2vou_A 4 TTDRIAVVGGSISGLTAALMLRD--AGVDVDVYERSPQP 40 (397)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSS
T ss_pred CCCcEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCC
Confidence 35799999999999999999999 89999999998653
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=2.4e-06 Score=85.87 Aligned_cols=34 Identities=18% Similarity=0.288 Sum_probs=32.0
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
.+||+|||||+||++||..+++ .|.+|+|+|+.+
T Consensus 27 ~yDVIVIGgG~AGl~AAlalAr--~G~kVlLIEk~~ 60 (637)
T 2zxi_A 27 EFDVVVIGGGHAGIEAALAAAR--MGAKTAMFVLNA 60 (637)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCG
T ss_pred cCCEEEECCCHHHHHHHHHHHH--CCCCEEEEEecc
Confidence 5899999999999999999999 899999999874
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.6e-06 Score=82.44 Aligned_cols=37 Identities=16% Similarity=0.225 Sum_probs=33.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
..+||+|||||++|+++|..|++ .|.+|+|+|+....
T Consensus 16 ~~~dvvIIGgG~~Gl~~A~~La~--~G~~V~llE~~~~~ 52 (382)
T 1ryi_A 16 RHYEAVVIGGGIIGSAIAYYLAK--ENKNTALFESGTMG 52 (382)
T ss_dssp SEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSTT
T ss_pred CCCCEEEECcCHHHHHHHHHHHh--CCCcEEEEeCCCCC
Confidence 34799999999999999999999 89999999997543
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=3.2e-06 Score=78.36 Aligned_cols=39 Identities=38% Similarity=0.464 Sum_probs=34.4
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
+||+||||||+|+++|..|++..++.+|+|+|+.+.+||
T Consensus 66 ~dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~gg 104 (326)
T 2gjc_A 66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGG 104 (326)
T ss_dssp ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCT
T ss_pred CCEEEECccHHHHHHHHHHHhcCCCCeEEEEecCccccc
Confidence 489999999999999999999333999999999888764
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=2.4e-06 Score=82.01 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=33.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
++++|+||||||+|+++|..|++ .|++|+|||+.+.+
T Consensus 22 ~~~dV~IVGaG~aGl~~A~~La~--~G~~V~v~E~~~~~ 58 (407)
T 3rp8_A 22 GHMKAIVIGAGIGGLSAAVALKQ--SGIDCDVYEAVKEI 58 (407)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCCCC
Confidence 46899999999999999999999 89999999998754
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.9e-06 Score=86.89 Aligned_cols=37 Identities=32% Similarity=0.530 Sum_probs=33.4
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
+..++|+|||||+||+++|..|++ .|.+|+|+|+.+.
T Consensus 21 M~~~DVvIVGgG~AGl~aA~~Lar--~G~~V~LiEr~~~ 57 (591)
T 3i3l_A 21 MTRSKVAIIGGGPAGSVAGLTLHK--LGHDVTIYERSAF 57 (591)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCS
T ss_pred CCCCCEEEECcCHHHHHHHHHHHc--CCCCEEEEcCCCC
Confidence 345899999999999999999999 8999999999853
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.23 E-value=2e-06 Score=80.64 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=35.5
Q ss_pred CcEEEECccHHHHHHHHHHHh-hCCCCcEEEEcCCCCCCCce
Q psy4525 14 PNVCIVGSGPAGFYCAQQILK-LLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~-~~~g~~v~lie~~~~~gg~~ 54 (388)
++|+|||||++|+++|..|++ ...|++|+|||+.+.+||.+
T Consensus 2 ~dV~IIGaG~aGl~~A~~L~~~~~~G~~V~v~Ek~~~~gg~~ 43 (342)
T 3qj4_A 2 AQVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDSGGRM 43 (342)
T ss_dssp EEEEEECCSHHHHHHHHHHHSCC-CCEEEEEECSSSSSCGGG
T ss_pred CcEEEECCcHHHHHHHHHHHhhccCCceEEEEECCCCCccce
Confidence 589999999999999999988 23588999999998888754
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.1e-06 Score=83.86 Aligned_cols=98 Identities=20% Similarity=0.163 Sum_probs=65.4
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC---CCceee-----------CCC--------------------
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP---FGLVRY-----------GVA-------------------- 59 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~---gg~~~~-----------g~~-------------------- 59 (388)
++|+||||||+|+++|..|++..+|.+|+|+|+.+.+ |..+.. +..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~~~G~~V~v~E~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSYLDAPERLNPQFLEDFKLVHH 80 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSCTTCCCCSEEEEESCTTTCTTCGGGGSSCGGGGCCEEECCEEEEES
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCCEEEEECCCCCCcceeEEEeCcHHHHhhcCcchhhhhhHHHhhccccceEEEeC
Confidence 4899999999999999999993349999999998665 221100 000
Q ss_pred ----------CCC-cchhHHHHHHHHhhcCCCcEEEceEEEEEEeeecccccccCEEEEeeCCCC
Q psy4525 60 ----------PDH-PEVKNVINTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADN 113 (388)
Q Consensus 60 ----------p~~-~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~yd~lvlAtG~~~ 113 (388)
+.. ....++...+.+.+.+.|+++++++.+..... .....+|.||.|+|..+
T Consensus 81 g~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~gv~i~~~~~v~~i~~--~~~~~ad~vV~AdG~~S 143 (381)
T 3c4a_A 81 NEPSLMSTGVLLCGVERRGLVHALRDKCRSQGIAIRFESPLLEHGE--LPLADYDLVVLANGVNH 143 (381)
T ss_dssp SSEEECCCCSCEEEEEHHHHHHHHHHHHHHTTCEEETTCCCCSGGG--CCGGGCSEEEECCGGGG
T ss_pred CeeEEecCCCceeeecHHHHHHHHHHHHHHCCCEEEeCCEeccchh--cccccCCEEEECCCCCc
Confidence 000 12345666666777667888888877632111 11247899999999765
|
| >1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A {Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A* 1f8w_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=3.4e-06 Score=82.14 Aligned_cols=92 Identities=17% Similarity=0.195 Sum_probs=69.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|++|+.+|..+++ .|.+|+++++.+.+. +. ....++...+.+.+++.|++++.++.+..
T Consensus 148 ~~~~vvIiG~G~~g~e~A~~l~~--~g~~Vtlv~~~~~~l--------~~-~~~~~~~~~l~~~l~~~gv~i~~~~~v~~ 216 (447)
T 1nhp_A 148 EVNNVVVIGSGYIGIEAAEAFAK--AGKKVTVIDILDRPL--------GV-YLDKEFTDVLTEEMEANNITIATGETVER 216 (447)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSTT--------TT-TCCHHHHHHHHHHHHTTTEEEEESCCEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--CCCeEEEEecCcccc--------cc-cCCHHHHHHHHHHHHhCCCEEEcCCEEEE
Confidence 56899999999999999999999 899999999986543 21 12345667777888889999998765532
Q ss_pred E--------eeecccccccCEEEEeeCCCCC
Q psy4525 92 D--------ISLGDLTNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~--------~~~~~~~~~yd~lvlAtG~~~~ 114 (388)
. +..++....+|.||+|+|..|.
T Consensus 217 i~~~~~v~~v~~~~~~i~~d~vi~a~G~~p~ 247 (447)
T 1nhp_A 217 YEGDGRVQKVVTDKNAYDADLVVVAVGVRPN 247 (447)
T ss_dssp EECSSBCCEEEESSCEEECSEEEECSCEEES
T ss_pred EEccCcEEEEEECCCEEECCEEEECcCCCCC
Confidence 1 2222223479999999997763
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=5.9e-06 Score=79.15 Aligned_cols=36 Identities=31% Similarity=0.504 Sum_probs=33.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
..++|+||||||+|+++|..|++ .|.+|+|||+.+.
T Consensus 25 ~~~dV~IVGaG~aGl~~A~~L~~--~G~~v~v~E~~~~ 60 (398)
T 2xdo_A 25 SDKNVAIIGGGPVGLTMAKLLQQ--NGIDVSVYERDND 60 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHT--TTCEEEEEECSSS
T ss_pred CCCCEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCCC
Confidence 45799999999999999999999 8999999999764
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=2.2e-06 Score=86.09 Aligned_cols=39 Identities=31% Similarity=0.448 Sum_probs=35.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
..+||+|||+|+||+++|..|++ .|.+|+|||+.+.+||
T Consensus 120 ~~~DVvVVG~G~aGl~aA~~la~--~G~~V~vlEk~~~~gg 158 (566)
T 1qo8_A 120 ETTQVLVVGAGSAGFNASLAAKK--AGANVILVDKAPFSGG 158 (566)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHH--HTCCEEEECSSSSSCT
T ss_pred CCCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCCCC
Confidence 35799999999999999999999 7999999999987665
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=98.19 E-value=9.4e-07 Score=87.29 Aligned_cols=40 Identities=20% Similarity=0.241 Sum_probs=31.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
+|+|||||||++||+||..|++ .|++|+|+|+++.+||..
T Consensus 1 Mk~VvVIGaG~~GL~aA~~La~--~G~~V~VlEa~~~~GG~~ 40 (501)
T 4dgk_A 1 MKPTTVIGAGFGGLALAIRLQA--AGIPVLLLEQRDKPGGRA 40 (501)
T ss_dssp CCCEEEECCHHHHHHHHHHHHH--TTCCEEEECCC-------
T ss_pred CCCEEEECCcHHHHHHHHHHHH--CCCcEEEEccCCCCCCcE
Confidence 4799999999999999999999 999999999999999976
|
| >1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for structural genomics, secsg, hyperthermoph protein structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=2.8e-06 Score=80.58 Aligned_cols=89 Identities=13% Similarity=0.104 Sum_probs=69.1
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE-
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ- 91 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~- 91 (388)
.++++|||+|+.|+.+|..|++ .|.+|+++++.+.+. | ...++.+.+.+.+++.|++++.++.+..
T Consensus 143 ~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l--------~---~~~~~~~~l~~~l~~~gV~i~~~~~v~~i 209 (367)
T 1xhc_A 143 SGEAIIIGGGFIGLELAGNLAE--AGYHVKLIHRGAMFL--------G---LDEELSNMIKDMLEETGVKFFLNSELLEA 209 (367)
T ss_dssp HSEEEEEECSHHHHHHHHHHHH--TTCEEEEECSSSCCT--------T---CCHHHHHHHHHHHHHTTEEEECSCCEEEE
T ss_pred CCcEEEECCCHHHHHHHHHHHh--CCCEEEEEeCCCeec--------c---CCHHHHHHHHHHHHHCCCEEEcCCEEEEE
Confidence 3799999999999999999999 899999999987653 3 2345667777778888999998866532
Q ss_pred ---EeeecccccccCEEEEeeCCCCC
Q psy4525 92 ---DISLGDLTNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ---~~~~~~~~~~yd~lvlAtG~~~~ 114 (388)
.+.+.+++..+|.||+|+|..|.
T Consensus 210 ~~~~v~~~~g~i~~D~vi~a~G~~p~ 235 (367)
T 1xhc_A 210 NEEGVLTNSGFIEGKVKICAIGIVPN 235 (367)
T ss_dssp CSSEEEETTEEEECSCEEEECCEEEC
T ss_pred EeeEEEECCCEEEcCEEEECcCCCcC
Confidence 13333333579999999997763
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=6e-06 Score=83.24 Aligned_cols=38 Identities=32% Similarity=0.412 Sum_probs=33.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCC------CCcEEEEcCCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLP------QSTVDIYEKLPVPFG 52 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~------g~~v~lie~~~~~gg 52 (388)
.+||+||||||||+++|..|++ . |.+|+|+|+.+.+|+
T Consensus 35 ~~DVvIVGaG~aGlaaA~~La~--~~~~~~~G~~V~vlEk~~~~g~ 78 (584)
T 2gmh_A 35 EADVVIVGAGPAGLSAATRLKQ--LAAQHEKDLRVCLVEKAAHIGA 78 (584)
T ss_dssp ECSEEEECCSHHHHHHHHHHHH--HHHHTTCCCCEEEECSSSSTTT
T ss_pred CCCEEEECcCHHHHHHHHHHHh--cccccCCCCcEEEEeCCCCCCC
Confidence 3799999999999999999999 5 999999999876653
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=98.17 E-value=3.5e-06 Score=80.45 Aligned_cols=34 Identities=29% Similarity=0.462 Sum_probs=31.8
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
++|+||||||+|+++|..|++ .|++|+|+|+.+.
T Consensus 3 ~dV~IvGaG~aGl~~A~~L~~--~G~~v~v~E~~~~ 36 (394)
T 1k0i_A 3 TQVAIIGAGPSGLLLGQLLHK--AGIDNVILERQTP 36 (394)
T ss_dssp CSEEEECCSHHHHHHHHHHHH--HTCCEEEECSSCH
T ss_pred ccEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCCC
Confidence 689999999999999999999 8999999998763
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=3.1e-06 Score=82.63 Aligned_cols=99 Identities=21% Similarity=0.165 Sum_probs=65.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC--CCc-----e------eeCCC------------------CC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP--FGL-----V------RYGVA------------------PD 61 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~--gg~-----~------~~g~~------------------p~ 61 (388)
.++|+||||||||+++|..|++ .|.+|+|+|+.+.+ |.. + ..+.. |.
T Consensus 6 ~~dVvIVGaG~aGl~aA~~La~--~G~~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~~~~~~~~~~~~~~~~~~~ 83 (453)
T 3atr_A 6 KYDVLIIGGGFAGSSAAYQLSR--RGLKILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYPKGEELENKINGIKLYSPD 83 (453)
T ss_dssp ECSEEEECCSHHHHHHHHHHSS--SSCCEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCCCGGGEEEEEEEEEEECTT
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCCCCCcccccccccHHHHHHhcCCCCchHHHHhhhcceEEECCC
Confidence 3799999999999999999999 89999999998643 111 0 00100 10
Q ss_pred C------------cchhHHHHHHHHhhcCCCcEEEceEEEEEE---------eeec---cc---ccccCEEEEeeCCCC
Q psy4525 62 H------------PEVKNVINTFTKTGDNPRVNFYGNICLGQD---------ISLG---DL---TNAYHAVVLTYGADN 113 (388)
Q Consensus 62 ~------------~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~---------~~~~---~~---~~~yd~lvlAtG~~~ 113 (388)
. .....+...+.+.+.+.|++++.++.+... +... ++ ...+|.||.|+|..+
T Consensus 84 ~~~~~~~~~~~~~i~r~~l~~~L~~~a~~~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG~~s 162 (453)
T 3atr_A 84 MQTVWTVNGEGFELNAPLYNQRVLKEAQDRGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATGYSR 162 (453)
T ss_dssp SSCEEEEEEEEEEECHHHHHHHHHHHHHHTTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCGGGC
T ss_pred CceEEeECCCcEEEcHHHHHHHHHHHHHHcCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcCCch
Confidence 0 112345566666666678999988766321 2222 22 237899999999765
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.17 E-value=8.1e-06 Score=77.49 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=31.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
.++|+|||||++|+++|..|++ .|.+|+|+|+..
T Consensus 5 ~~dVvIIGgGi~Gl~~A~~La~--~G~~V~lle~~~ 38 (382)
T 1y56_B 5 KSEIVVIGGGIVGVTIAHELAK--RGEEVTVIEKRF 38 (382)
T ss_dssp BCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCC
Confidence 4799999999999999999999 899999999984
|
| >2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=3.6e-06 Score=82.16 Aligned_cols=91 Identities=12% Similarity=0.095 Sum_probs=67.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|++|+.+|..|++ .|.+|+++++.+.+. |. ...++.+.+.+.+++.|++++.++.+..
T Consensus 166 ~~~~vvIiGgG~~g~e~A~~l~~--~g~~V~lv~~~~~~l--------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~V~~ 233 (455)
T 2yqu_A 166 VPKRLIVVGGGVIGLELGVVWHR--LGAEVIVLEYMDRIL--------PT--MDLEVSRAAERVFKKQGLTIRTGVRVTA 233 (455)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSC--------TT--SCHHHHHHHHHHHHHHTCEEECSCCEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--cCCEEEEEecCCccc--------cc--cCHHHHHHHHHHHHHCCCEEEECCEEEE
Confidence 35899999999999999999999 899999999986642 32 2345566666777777999998766532
Q ss_pred E--------eeeccc-ccccCEEEEeeCCCCC
Q psy4525 92 D--------ISLGDL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~--------~~~~~~-~~~yd~lvlAtG~~~~ 114 (388)
. +...+. ...+|.||+|+|..+.
T Consensus 234 i~~~~~~v~v~~~~g~~i~~D~vv~A~G~~p~ 265 (455)
T 2yqu_A 234 VVPEAKGARVELEGGEVLEADRVLVAVGRRPY 265 (455)
T ss_dssp EEEETTEEEEEETTSCEEEESEEEECSCEEEC
T ss_pred EEEeCCEEEEEECCCeEEEcCEEEECcCCCcC
Confidence 1 222233 2379999999998763
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.15 E-value=4.9e-06 Score=82.31 Aligned_cols=101 Identities=16% Similarity=0.136 Sum_probs=66.6
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCc-----e---------eeCCC-----------------
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGL-----V---------RYGVA----------------- 59 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~-----~---------~~g~~----------------- 59 (388)
...++|+||||||+|+++|..|++ .|++|+|||+.+.++.. + ..|+.
T Consensus 9 ~~~~dVlIVGaGpaGl~~A~~La~--~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 86 (500)
T 2qa1_A 9 RSDAAVIVVGAGPAGMMLAGELRL--AGVEVVVLERLVERTGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGL 86 (500)
T ss_dssp CSBCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCCC-CCCCCSEEECHHHHHHHHTTTCGGGGCSCCBCCEEEETTE
T ss_pred cCCCCEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCCCCCCCcceECHHHHHHHHHCCCHHHHHhccccccccccce
Confidence 456899999999999999999999 89999999997654210 0 00110
Q ss_pred -------CC-C-----cchhHHHHHHHHhhcCCCcEEEceEEEEE--------Eeeeccc----ccccCEEEEeeCCCC
Q psy4525 60 -------PD-H-----PEVKNVINTFTKTGDNPRVNFYGNICLGQ--------DISLGDL----TNAYHAVVLTYGADN 113 (388)
Q Consensus 60 -------p~-~-----~~~~~~~~~~~~~~~~~~i~~~~~~~v~~--------~~~~~~~----~~~yd~lvlAtG~~~ 113 (388)
+. + .....+...+.+.+.+.+++++.++.+.. .++..+. ...+|+||.|.|..+
T Consensus 87 ~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S 165 (500)
T 2qa1_A 87 PIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGAGVTVEVRGPEGKHTLRAAYLVGCDGGRS 165 (500)
T ss_dssp EEEGGGSTTGGGCEEEEEHHHHHHHHHHHHHHTTCEEEETCEEEEEEEETTEEEEEEEETTEEEEEEESEEEECCCTTC
T ss_pred ecccccCCCCCCceeecCHHHHHHHHHHHHHHCCCEEECCcEEEEEEEcCCeEEEEEEcCCCCEEEEeCEEEECCCcch
Confidence 00 0 01234555566666667898888776532 1223222 247899999999765
|
| >2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=6.6e-06 Score=78.42 Aligned_cols=91 Identities=18% Similarity=0.145 Sum_probs=68.5
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE-
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ- 91 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~- 91 (388)
+++++|||+|+.|+.+|..|.+ .|.+|+++++.+.+. +.. ...++...+.+.+++.|++++.++.+..
T Consensus 145 ~~~v~ViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~~--------~~~-~~~~~~~~l~~~l~~~gv~i~~~~~v~~i 213 (384)
T 2v3a_A 145 KRRVLLLGAGLIGCEFANDLSS--GGYQLDVVAPCEQVM--------PGL-LHPAAAKAVQAGLEGLGVRFHLGPVLASL 213 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSSS--------TTT-SCHHHHHHHHHHHHTTTCEEEESCCEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHh--CCCeEEEEecCcchh--------hcc-cCHHHHHHHHHHHHHcCCEEEeCCEEEEE
Confidence 6899999999999999999999 899999999886542 211 2345667777778888999998765532
Q ss_pred -------Eeeecccc-cccCEEEEeeCCCCC
Q psy4525 92 -------DISLGDLT-NAYHAVVLTYGADND 114 (388)
Q Consensus 92 -------~~~~~~~~-~~yd~lvlAtG~~~~ 114 (388)
.+...+.+ ..+|.||+|+|..+.
T Consensus 214 ~~~~~~~~v~~~~g~~i~~d~vv~a~G~~p~ 244 (384)
T 2v3a_A 214 KKAGEGLEAHLSDGEVIPCDLVVSAVGLRPR 244 (384)
T ss_dssp EEETTEEEEEETTSCEEEESEEEECSCEEEC
T ss_pred EecCCEEEEEECCCCEEECCEEEECcCCCcC
Confidence 13333332 379999999997763
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=9.8e-07 Score=87.29 Aligned_cols=43 Identities=23% Similarity=0.461 Sum_probs=38.4
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
...+||+|||||++||+||..|++. .|.+|+|+|+++.+||.+
T Consensus 8 ~~~~DVvIIGaGisGLsaA~~L~k~-~G~~V~VlE~~~~~GG~~ 50 (513)
T 4gde_A 8 DISVDVLVIGAGPTGLGAAKRLNQI-DGPSWMIVDSNETPGGLA 50 (513)
T ss_dssp SEEEEEEEECCSHHHHHHHHHHHHH-CCSCEEEEESSSSCCGGG
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhh-CCCCEEEEECCCCCcCCe
Confidence 3457999999999999999999863 599999999999999976
|
| >2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A {Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A* 2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=5.8e-06 Score=79.58 Aligned_cols=92 Identities=18% Similarity=0.159 Sum_probs=69.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++|+|||+|+.|+.+|..|++ .|.+|+++++.+.+. |. ....++...+.+.+++.|++++.++.+..
T Consensus 144 ~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l--------~~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~~ 212 (408)
T 2gqw_A 144 PQSRLLIVGGGVIGLELAATART--AGVHVSLVETQPRLM--------SR-AAPATLADFVARYHAAQGVDLRFERSVTG 212 (408)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSSS--------TT-TSCHHHHHHHHHHHHHTTCEEEESCCEEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHh--CCCEEEEEEeCCccc--------cc-ccCHHHHHHHHHHHHHcCcEEEeCCEEEE
Confidence 46899999999999999999999 899999999986642 21 12345666677778888999998866532
Q ss_pred ----Eeeecccc-cccCEEEEeeCCCCC
Q psy4525 92 ----DISLGDLT-NAYHAVVLTYGADND 114 (388)
Q Consensus 92 ----~~~~~~~~-~~yd~lvlAtG~~~~ 114 (388)
.+...++. ..+|.||+|+|..+.
T Consensus 213 i~~~~v~~~~g~~i~~D~vi~a~G~~p~ 240 (408)
T 2gqw_A 213 SVDGVVLLDDGTRIAADMVVVGIGVLAN 240 (408)
T ss_dssp EETTEEEETTSCEEECSEEEECSCEEEC
T ss_pred EECCEEEECCCCEEEcCEEEECcCCCcc
Confidence 23333332 379999999997763
|
| >2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=6.3e-06 Score=80.72 Aligned_cols=91 Identities=13% Similarity=0.182 Sum_probs=68.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|++|+.+|..|++ .|.+|+++++.+.+. | ....++.+.+.+.+++.|++++.++.+..
T Consensus 168 ~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l--------~--~~~~~~~~~l~~~l~~~gV~i~~~~~v~~ 235 (464)
T 2eq6_A 168 LPKRLLVIGGGAVGLELGQVYRR--LGAEVTLIEYMPEIL--------P--QGDPETAALLRRALEKEGIRVRTKTKAVG 235 (464)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSS--------T--TSCHHHHHHHHHHHHHTTCEEECSEEEEE
T ss_pred cCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEEcCCccc--------c--ccCHHHHHHHHHHHHhcCCEEEcCCEEEE
Confidence 35899999999999999999999 899999999986642 2 12345666677778888999998876532
Q ss_pred --------Eeeec-c--c---ccccCEEEEeeCCCCC
Q psy4525 92 --------DISLG-D--L---TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 --------~~~~~-~--~---~~~yd~lvlAtG~~~~ 114 (388)
.+... + + ...+|.||+|+|..|.
T Consensus 236 i~~~~~~~~v~~~~~~~g~~~~i~~D~vv~a~G~~p~ 272 (464)
T 2eq6_A 236 YEKKKDGLHVRLEPAEGGEGEEVVVDKVLVAVGRKPR 272 (464)
T ss_dssp EEEETTEEEEEEEETTCCSCEEEEESEEEECSCEEES
T ss_pred EEEeCCEEEEEEeecCCCceeEEEcCEEEECCCcccC
Confidence 12322 2 3 2379999999997763
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=98.13 E-value=7.3e-06 Score=82.55 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=32.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
..+||+|||||+||++||..+++ .|.+|+|+|+.+
T Consensus 20 ~~yDVIVIGgG~AGl~AAlaLAr--~G~kVlLIEk~~ 54 (641)
T 3cp8_A 20 HMYDVIVVGAGHAGCEAALAVAR--GGLHCLLITSDL 54 (641)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESCG
T ss_pred CcCCEEEECccHHHHHHHHHHHH--CCCcEEEEEecc
Confidence 45899999999999999999999 899999999874
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=8.9e-06 Score=81.81 Aligned_cols=39 Identities=36% Similarity=0.498 Sum_probs=35.5
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCc
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGL 53 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~ 53 (388)
.++|+|||+|++|+++|..|++ .|.+|+|+|+.+.+||.
T Consensus 126 ~~~v~viG~G~aG~~aa~~~~~--~g~~v~~~e~~~~~~~~ 164 (572)
T 1d4d_A 126 TTDVVIIGSGGAGLAAAVSARD--AGAKVILLEKEPIPGGN 164 (572)
T ss_dssp ECSEEEECCSHHHHHHHHHHHS--SSCCEEEECSSSSSCTT
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCcEEEEecCCCCCcc
Confidence 5799999999999999999999 89999999999877654
|
| >2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide oxidoreductase, C(4A)-peroxyflavin, crystallography, conformational dynamics; HET: FAD; 2.00A {Streptococcus pyogenes} PDB: 2bcp_A* 2bc1_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=8.7e-06 Score=80.29 Aligned_cols=92 Identities=13% Similarity=0.122 Sum_probs=69.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++|+|||+|+.|+.+|..|++ .|.+|+++++.+.+. |. ....++.+.+.+.+++.|++++.++.+..
T Consensus 193 ~~~~vvVIGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~~l--------~~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~~ 261 (490)
T 2bc0_A 193 DIKRVAVVGAGYIGVELAEAFQR--KGKEVVLIDVVDTCL--------AG-YYDRDLTDLMAKNMEEHGIQLAFGETVKE 261 (490)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSTT--------TT-TSCHHHHHHHHHHHHTTTCEEEETCCEEE
T ss_pred CCceEEEECCCHHHHHHHHHHHH--CCCeEEEEEcccchh--------hh-HHHHHHHHHHHHHHHhCCeEEEeCCEEEE
Confidence 46899999999999999999999 899999999986542 21 12345667777888889999998766532
Q ss_pred E--------eeecccccccCEEEEeeCCCCC
Q psy4525 92 D--------ISLGDLTNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~--------~~~~~~~~~yd~lvlAtG~~~~ 114 (388)
. +..+.....+|.||+|+|..|.
T Consensus 262 i~~~~~v~~v~~~g~~i~~D~Vi~a~G~~p~ 292 (490)
T 2bc0_A 262 VAGNGKVEKIITDKNEYDVDMVILAVGFRPN 292 (490)
T ss_dssp EECSSSCCEEEESSCEEECSEEEECCCEEEC
T ss_pred EEcCCcEEEEEECCcEEECCEEEECCCCCcC
Confidence 1 2222223479999999997763
|
| >4b1b_A TRXR, thioredoxin reductase; oxidoreductase, FAD, NADPH, thiol-mediated redox metabolism, pyridine nucleotide-disulfide oxidoreductase; HET: FAD; 2.90A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.10 E-value=4e-06 Score=83.48 Aligned_cols=90 Identities=13% Similarity=0.120 Sum_probs=67.9
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
..+++++|||||+.|+.+|..+++ .|.+||++++...+ |. ...++...+.+.+++.++.++.+..+.
T Consensus 221 ~lP~~lvIIGgG~IGlE~A~~~~~--lG~~VTii~~~~~L---------~~--~D~ei~~~l~~~l~~~gi~~~~~~~v~ 287 (542)
T 4b1b_A 221 KDPGKTLVVGASYVALECSGFLNS--LGYDVTVAVRSIVL---------RG--FDQQCAVKVKLYMEEQGVMFKNGILPK 287 (542)
T ss_dssp SCCCSEEEECCSHHHHHHHHHHHH--HTCCEEEEESSCSS---------TT--SCHHHHHHHHHHHHHTTCEEEETCCEE
T ss_pred cCCceEEEECCCHHHHHHHHHHHh--cCCeEEEecccccc---------cc--cchhHHHHHHHHHHhhcceeecceEEE
Confidence 456899999999999999999999 89999999875322 32 245677778888888999998876653
Q ss_pred EE--------eeeccc-ccccCEEEEeeCCCC
Q psy4525 91 QD--------ISLGDL-TNAYHAVVLTYGADN 113 (388)
Q Consensus 91 ~~--------~~~~~~-~~~yd~lvlAtG~~~ 113 (388)
.. +...+. ...+|.|++|+|..|
T Consensus 288 ~~~~~~~~~~v~~~~~~~~~~D~vLvAvGR~P 319 (542)
T 4b1b_A 288 KLTKMDDKILVEFSDKTSELYDTVLYAIGRKG 319 (542)
T ss_dssp EEEEETTEEEEEETTSCEEEESEEEECSCEEE
T ss_pred EEEecCCeEEEEEcCCCeEEEEEEEEcccccC
Confidence 21 222222 236899999999655
|
| >2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=3.9e-07 Score=90.15 Aligned_cols=183 Identities=11% Similarity=0.021 Sum_probs=95.7
Q ss_pred ccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccC------CCCccccCcCCCCCeEEEEcCChHHHHHHHHhccC
Q psy4525 101 AYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNG------LPEDASLDLSLDCEEATILGQGNVAMDVARILLSP 174 (388)
Q Consensus 101 ~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~ 174 (388)
.||.+++++|+.+ +.+++++.+.++++........... +..... .......+|+|||||.+|+.+|..|+
T Consensus 37 ~~~~l~~~~g~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~dVvIVGgG~aGl~aA~~La-- 112 (497)
T 2bry_A 37 SFQGLCRALGVES-GGGLSQYHKIKAQLNYWSAKSLWAKLDKRASQPVYQQ-GQACTNTKCLVVGAGPCGLRAAVELA-- 112 (497)
T ss_dssp HHHHHHHHHTCCT-TCHHHHHHHHHHTCCSTTTHHHHHHHHHHHTSGGGGG-GTTTTTCEEEEECCSHHHHHHHHHHH--
T ss_pred HHHHHHHHhCCCC-CCCcEeehhhHHHHHHHHHHHhhhhhhhhhccccccC-ccccCCCCEEEECccHHHHHHHHHHH--
Confidence 6889999999886 4555544333333332221110000 000000 11223578999999999999999886
Q ss_pred CcccccccCchhHHHhhhcCCCcEEEEEeecCccc----ccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhh
Q psy4525 175 VDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQ----VAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRK 250 (388)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~----~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 250 (388)
+.| .+|+++.+.+... ....+..++.+.... .... ... ........ -.+.
T Consensus 113 ------------------~~G-~~V~liEk~~~~g~~~~~~~~~~~~~~l~~~g-~~~~-~~~---~~~~~~~~--~~~~ 166 (497)
T 2bry_A 113 ------------------LLG-ARVVLVEKRIKFSRHNVLHLWPFTIHDLRALG-AKKF-YGR---FCTGTLDH--ISIR 166 (497)
T ss_dssp ------------------HTT-CEEEEEESCSSCCCCCEEECCHHHHHHHHTTT-HHHH-CTT---TTCTTCCE--EEHH
T ss_pred ------------------HCC-CeEEEEEeccccCCCCcccCChhHHHHHHHcC-Cccc-ccc---cccccccc--CCHH
Confidence 344 4799999886542 112233332222111 0000 000 00000000 0123
Q ss_pred HHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCC-CCceeEEEEccCccccCCce--eEEecceEEEccccCCcc
Q psy4525 251 RLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLND-NGAITGINFANQQALVTEDT--ELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~-~~~v~~v~~~~~~~~~~~~~--~~l~~D~Vi~a~G~~p~~ 326 (388)
.+...+...+. +.|+++++++.++++..++ ++....+.+.+ ..++ +++.+|.||.|+|..+..
T Consensus 167 ~l~~~L~~~~~--------~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~-----~~~g~~~~i~ad~VV~A~G~~S~~ 232 (497)
T 2bry_A 167 QLQLLLLKVAL--------LLGVEIHWGVKFTGLQPPPRKGSGWRAQLQP-----NPPAQLASYEFDVLISAAGGKFVP 232 (497)
T ss_dssp HHHHHHHHHHH--------HTTCEEEESCEEEEEECCCSTTCCBEEEEES-----CCCHHHHTCCBSEEEECCCTTCCC
T ss_pred HHHHHHHHHHH--------hCCCEEEeCCEEEEEEEecCCCCEEEEEEEE-----CCCCCEEEEEcCEEEECCCCCccc
Confidence 34444443321 4689999999999997532 23333444321 1023 468999999999998765
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=98.09 E-value=6.1e-06 Score=81.59 Aligned_cols=101 Identities=18% Similarity=0.207 Sum_probs=67.0
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCc-----e---------eeCCC-----------------
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGL-----V---------RYGVA----------------- 59 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~-----~---------~~g~~----------------- 59 (388)
...++|+||||||+|+++|..|++ .|++|+|||+.+.++.. + ..|+.
T Consensus 10 ~~~~dVlIVGaGpaGl~~A~~La~--~G~~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~~~~~~~~~~~~~~~~~~ 87 (499)
T 2qa2_A 10 RSDASVIVVGAGPAGLMLAGELRL--GGVDVMVLEQLPQRTGESRGLGFTARTMEVFDQRGILPAFGPVETSTQGHFGGR 87 (499)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCGGGGCSCCEESEEEETTE
T ss_pred CCCCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECCCCCCCCCceeEECHHHHHHHHHCCCHHHHHhccccccceecce
Confidence 356899999999999999999999 89999999987654210 0 00100
Q ss_pred -------C-CCc-----chhHHHHHHHHhhcCCCcEEEceEEEEE--------Eeeeccc----ccccCEEEEeeCCCC
Q psy4525 60 -------P-DHP-----EVKNVINTFTKTGDNPRVNFYGNICLGQ--------DISLGDL----TNAYHAVVLTYGADN 113 (388)
Q Consensus 60 -------p-~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~v~~--------~~~~~~~----~~~yd~lvlAtG~~~ 113 (388)
+ .++ ....+...+.+.+.+.+++++.++.+.. .++..+. ...+|+||.|.|..+
T Consensus 88 ~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~~~g~~~~~a~~vVgADG~~S 166 (499)
T 2qa2_A 88 PVDFGVLEGAHYGVKAVPQSTTESVLEEWALGRGAELLRGHTVRALTDEGDHVVVEVEGPDGPRSLTTRYVVGCDGGRS 166 (499)
T ss_dssp EEEGGGSTTCCCEEEEEEHHHHHHHHHHHHHHTTCEEEESCEEEEEEECSSCEEEEEECSSCEEEEEEEEEEECCCTTC
T ss_pred ecccccCCCCCCceEecCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCcEEEEeCEEEEccCccc
Confidence 0 010 1344555666666667899888776532 1233222 237899999999765
|
| >3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=3.8e-06 Score=81.15 Aligned_cols=47 Identities=19% Similarity=0.180 Sum_probs=40.3
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce---eeCCCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV---RYGVAPDH 62 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~---~~g~~p~~ 62 (388)
+||+|||||++|++||..|++ .|.+|+|+|+.+.+||.+ +.+|.|..
T Consensus 2 ~dVvVIGaG~aGl~aA~~L~~--~G~~V~vlE~~~~~GG~~~t~~~~cipg~ 51 (431)
T 3k7m_X 2 YDAIVVGGGFSGLKAARDLTN--AGKKVLLLEGGERLGGRAYSRESRNVPGL 51 (431)
T ss_dssp EEEEEECCBHHHHHHHHHHHH--TTCCEEEECSSSSSBTTCCEEECSSSTTC
T ss_pred CCEEEECCcHHHHHHHHHHHH--cCCeEEEEecCCCccCeecceeccCCCCc
Confidence 589999999999999999999 899999999998998876 33544443
|
| >1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=5.7e-06 Score=80.89 Aligned_cols=91 Identities=12% Similarity=0.087 Sum_probs=67.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||||++|+.+|..|++ .|.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 170 ~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~gv~i~~~~~v~~ 237 (458)
T 1lvl_A 170 LPQHLVVVGGGYIGLELGIAYRK--LGAQVSVVEARERIL--------PT--YDSELTAPVAESLKKLGIALHLGHSVEG 237 (458)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--HTCEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHHTCEEETTCEEEE
T ss_pred cCCeEEEECcCHHHHHHHHHHHH--CCCeEEEEEcCCccc--------cc--cCHHHHHHHHHHHHHCCCEEEECCEEEE
Confidence 45899999999999999999999 799999999987653 31 2344566666777778999998866532
Q ss_pred E----eeec--cc---ccccCEEEEeeCCCCC
Q psy4525 92 D----ISLG--DL---TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~----~~~~--~~---~~~yd~lvlAtG~~~~ 114 (388)
. +.+. ++ ...+|.||+|+|..|.
T Consensus 238 i~~~~v~v~~~~G~~~~i~~D~vv~a~G~~p~ 269 (458)
T 1lvl_A 238 YENGCLLANDGKGGQLRLEADRVLVAVGRRPR 269 (458)
T ss_dssp EETTEEEEECSSSCCCEECCSCEEECCCEEEC
T ss_pred EEeCCEEEEECCCceEEEECCEEEECcCCCcC
Confidence 1 2222 22 2379999999998763
|
| >4eqs_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.50A {Staphylococcus aureus subsp} PDB: 1yqz_A* 4eqw_A* 4em4_A* 4em3_A* 4eqr_A* 4emw_A* 4eqx_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=5.5e-06 Score=80.49 Aligned_cols=90 Identities=10% Similarity=0.098 Sum_probs=68.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||||+.|+.+|..+++ .|.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 146 ~~~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~ll--------~~--~d~~~~~~~~~~l~~~gV~i~~~~~v~~ 213 (437)
T 4eqs_A 146 QVDKVLVVGAGYVSLEVLENLYE--RGLHPTLIHRSDKIN--------KL--MDADMNQPILDELDKREIPYRLNEEINA 213 (437)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHH--HTCEEEEEESSSCCS--------TT--SCGGGGHHHHHHHHHTTCCEEESCCEEE
T ss_pred CCcEEEEECCccchhhhHHHHHh--cCCcceeeeeecccc--------cc--ccchhHHHHHHHhhccceEEEeccEEEE
Confidence 35799999999999999999999 899999999987643 21 1234455566677778999998877643
Q ss_pred ----Eeeecccc-cccCEEEEeeCCCC
Q psy4525 92 ----DISLGDLT-NAYHAVVLTYGADN 113 (388)
Q Consensus 92 ----~~~~~~~~-~~yd~lvlAtG~~~ 113 (388)
.+...+.+ ..+|.|++|+|..|
T Consensus 214 ~~~~~v~~~~g~~~~~D~vl~a~G~~P 240 (437)
T 4eqs_A 214 INGNEITFKSGKVEHYDMIIEGVGTHP 240 (437)
T ss_dssp EETTEEEETTSCEEECSEEEECCCEEE
T ss_pred ecCCeeeecCCeEEeeeeEEEEeceec
Confidence 24444443 37999999999766
|
| >3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=98.03 E-value=3.1e-06 Score=80.89 Aligned_cols=87 Identities=18% Similarity=0.166 Sum_probs=67.3
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQD 92 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~ 92 (388)
.++|+|||+|+.|+.+|..|++ .|.+|+++++.+.+. +. ....++...+.+.+++.|++++.++.+...
T Consensus 146 ~~~vvVIGgG~~g~E~A~~l~~--~g~~Vtvv~~~~~~l--------~~-~~~~~~~~~~~~~l~~~gV~~~~~~~v~~i 214 (385)
T 3klj_A 146 KGKAFIIGGGILGIELAQAIID--SGTPASIGIILEYPL--------ER-QLDRDGGLFLKDKLDRLGIKIYTNSNFEEM 214 (385)
T ss_dssp HSCEEEECCSHHHHHHHHHHHH--HTCCEEEECSSSSSC--------TT-TSCHHHHHHHHHHHHTTTCEEECSCCGGGC
T ss_pred CCeEEEECCCHHHHHHHHHHHh--CCCeEEEEEcCCccc--------hh-hcCHHHHHHHHHHHHhCCCEEEeCCEEEEc
Confidence 4799999999999999999999 799999999987642 21 123456667777888899999988765321
Q ss_pred eeecccccccCEEEEeeCCCCC
Q psy4525 93 ISLGDLTNAYHAVVLTYGADND 114 (388)
Q Consensus 93 ~~~~~~~~~yd~lvlAtG~~~~ 114 (388)
.....+|.||+|+|..|.
T Consensus 215 ----g~~~~~D~vv~a~G~~p~ 232 (385)
T 3klj_A 215 ----GDLIRSSCVITAVGVKPN 232 (385)
T ss_dssp ----HHHHHHSEEEECCCEEEC
T ss_pred ----CeEEecCeEEECcCcccC
Confidence 223479999999997763
|
| >1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=1.2e-05 Score=78.37 Aligned_cols=91 Identities=15% Similarity=0.138 Sum_probs=67.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..|++ .|.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 169 ~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~gv~i~~~~~v~~ 236 (455)
T 1ebd_A 169 VPKSLVVIGGGYIGIELGTAYAN--FGTKVTILEGAGEIL--------SG--FEKQMAAIIKKRLKKKGVEVVTNALAKG 236 (455)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSSS--------TT--SCHHHHHHHHHHHHHTTCEEEESEEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCCccc--------cc--cCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 45899999999999999999999 899999999986643 32 2345666677777788999998876532
Q ss_pred E--------eeec---cc-ccccCEEEEeeCCCCC
Q psy4525 92 D--------ISLG---DL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~--------~~~~---~~-~~~yd~lvlAtG~~~~ 114 (388)
. ++.. +. ...+|.||+|+|..|.
T Consensus 237 i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~ 271 (455)
T 1ebd_A 237 AEEREDGVTVTYEANGETKTIDADYVLVTVGRRPN 271 (455)
T ss_dssp EEEETTEEEEEEEETTEEEEEEESEEEECSCEEES
T ss_pred EEEeCCeEEEEEEeCCceeEEEcCEEEECcCCCcc
Confidence 1 2221 11 2379999999997763
|
| >1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=9.7e-06 Score=79.41 Aligned_cols=90 Identities=12% Similarity=0.122 Sum_probs=68.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..+.+ .+.+|+++++.+.+. | ...++...+.+.+++.|++++.++.+..
T Consensus 175 ~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l--------~---~~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 241 (467)
T 1zk7_A 175 IPERLAVIGSSVVALELAQAFAR--LGSKVTVLARNTLFF--------R---EDPAIGEAVTAAFRAEGIEVLEHTQASQ 241 (467)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCTTT--------T---SCHHHHHHHHHHHHHTTCEEETTCCEEE
T ss_pred cCCEEEEECCCHHHHHHHHHHHH--cCCEEEEEEECCccC--------C---CCHHHHHHHHHHHHhCCCEEEcCCEEEE
Confidence 46899999999999999999999 899999999986542 3 2345667777778888999998766532
Q ss_pred E--------eeecccccccCEEEEeeCCCCC
Q psy4525 92 D--------ISLGDLTNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~--------~~~~~~~~~yd~lvlAtG~~~~ 114 (388)
. +..++....+|.||+|+|..+.
T Consensus 242 i~~~~~~~~v~~~~~~i~aD~Vv~a~G~~p~ 272 (467)
T 1zk7_A 242 VAHMDGEFVLTTTHGELRADKLLVATGRTPN 272 (467)
T ss_dssp EEEETTEEEEEETTEEEEESEEEECSCEEES
T ss_pred EEEeCCEEEEEECCcEEEcCEEEECCCCCcC
Confidence 1 2233333479999999997663
|
| >1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A* | Back alignment and structure |
|---|
Probab=98.02 E-value=1.2e-05 Score=78.98 Aligned_cols=91 Identities=14% Similarity=0.093 Sum_probs=68.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..|++ .|.+|+++++.+.+. | ....++...+.+.+++.|++++.++.+..
T Consensus 182 ~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l--------~--~~~~~~~~~l~~~l~~~gv~i~~~~~v~~ 249 (478)
T 1v59_A 182 IPKRLTIIGGGIIGLEMGSVYSR--LGSKVTVVEFQPQIG--------A--SMDGEVAKATQKFLKKQGLDFKLSTKVIS 249 (478)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSS--------S--SSCHHHHHHHHHHHHHTTCEEECSEEEEE
T ss_pred cCceEEEECCCHHHHHHHHHHHH--cCCEEEEEEeCCccc--------c--ccCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 36899999999999999999999 899999999987653 2 12345666777778888999998876532
Q ss_pred E----------eeec-----cc-ccccCEEEEeeCCCCC
Q psy4525 92 D----------ISLG-----DL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~----------~~~~-----~~-~~~yd~lvlAtG~~~~ 114 (388)
. +... +. ...+|.||+|+|..|.
T Consensus 250 i~~~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~ 288 (478)
T 1v59_A 250 AKRNDDKNVVEIVVEDTKTNKQENLEAEVLLVAVGRRPY 288 (478)
T ss_dssp EEEETTTTEEEEEEEETTTTEEEEEEESEEEECSCEEEC
T ss_pred EEEecCCCeEEEEEEEcCCCCceEEECCEEEECCCCCcC
Confidence 1 1222 11 2379999999997763
|
| >2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=98.02 E-value=5.3e-06 Score=78.68 Aligned_cols=42 Identities=24% Similarity=0.281 Sum_probs=39.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC-CCCCCce
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL-PVPFGLV 54 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~-~~~gg~~ 54 (388)
..+++|+|||||++||++|..|.+ .|++|+|+|+. +.+||.+
T Consensus 42 ~~~~~V~IIGAGiaGL~aA~~L~~--~G~~V~VlE~~~~~vGGr~ 84 (376)
T 2e1m_A 42 GPPKRILIVGAGIAGLVAGDLLTR--AGHDVTILEANANRVGGRI 84 (376)
T ss_dssp CSCCEEEEECCBHHHHHHHHHHHH--TSCEEEEECSCSSCCBTTC
T ss_pred CCCceEEEECCCHHHHHHHHHHHH--CCCcEEEEeccccccCCce
Confidence 456899999999999999999999 89999999999 9999977
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=5.7e-06 Score=79.82 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=38.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCC-CcEEEEcCCCCCCCce
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQ-STVDIYEKLPVPFGLV 54 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g-~~v~lie~~~~~gg~~ 54 (388)
.+++|+|||||++|++||..|++ .| .+|+|+|+.+.+||.+
T Consensus 5 ~~~~v~IIGaG~aGl~aA~~L~~--~g~~~v~v~E~~~~~GG~~ 46 (424)
T 2b9w_A 5 KDSRIAIIGAGPAGLAAGMYLEQ--AGFHDYTILERTDHVGGKC 46 (424)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHH--TTCCCEEEECSSSCSSTTC
T ss_pred CCCCEEEECcCHHHHHHHHHHHh--CCCCcEEEEECCCCCCCcc
Confidence 45799999999999999999999 89 8999999999999876
|
| >3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.01 E-value=2.5e-05 Score=76.14 Aligned_cols=92 Identities=16% Similarity=0.230 Sum_probs=70.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..+.+ .|.+|+++++.+.+. |. ....++...+.+.+++.|++++.++.+..
T Consensus 146 ~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l--------~~-~~d~~~~~~l~~~l~~~GV~i~~~~~v~~ 214 (452)
T 3oc4_A 146 NSQTVAVIGAGPIGMEAIDFLVK--MKKTVHVFESLENLL--------PK-YFDKEMVAEVQKSLEKQAVIFHFEETVLG 214 (452)
T ss_dssp TCSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSSS--------TT-TCCHHHHHHHHHHHHTTTEEEEETCCEEE
T ss_pred cCCEEEEECCCHHHHHHHHHHHh--CCCeEEEEEccCccc--------cc-cCCHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence 45899999999999999999999 899999999986542 21 12355677778888889999998766532
Q ss_pred E--------eeecccccccCEEEEeeCCCCC
Q psy4525 92 D--------ISLGDLTNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~--------~~~~~~~~~yd~lvlAtG~~~~ 114 (388)
. +..++....+|.||+|+|..|.
T Consensus 215 i~~~~~~v~v~~~~g~i~aD~Vv~A~G~~p~ 245 (452)
T 3oc4_A 215 IEETANGIVLETSEQEISCDSGIFALNLHPQ 245 (452)
T ss_dssp EEECSSCEEEEESSCEEEESEEEECSCCBCC
T ss_pred EEccCCeEEEEECCCEEEeCEEEECcCCCCC
Confidence 1 2333334579999999998764
|
| >3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.7e-05 Score=76.47 Aligned_cols=91 Identities=15% Similarity=0.191 Sum_probs=69.0
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE-
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ- 91 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~- 91 (388)
.++++|||+|+.|+.+|..+.+ .+.+|+++++.+.+. +. ....++...+.+.+++.|++++.++.+..
T Consensus 152 ~~~vvViGgG~~g~e~A~~l~~--~g~~Vtvv~~~~~~l--------~~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~~i 220 (415)
T 3lxd_A 152 AKNAVVIGGGYIGLEAAAVLTK--FGVNVTLLEALPRVL--------AR-VAGEALSEFYQAEHRAHGVDLRTGAAMDCI 220 (415)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSTT--------TT-TSCHHHHHHHHHHHHHTTCEEEETCCEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHh--cCCeEEEEecCCchh--------hh-hcCHHHHHHHHHHHHhCCCEEEECCEEEEE
Confidence 6899999999999999999999 899999999986642 11 12345667777778888999997766532
Q ss_pred --------Eeeecccc-cccCEEEEeeCCCCC
Q psy4525 92 --------DISLGDLT-NAYHAVVLTYGADND 114 (388)
Q Consensus 92 --------~~~~~~~~-~~yd~lvlAtG~~~~ 114 (388)
.+.+.+++ ..+|.||+|+|..+.
T Consensus 221 ~~~~~~v~~v~l~dG~~i~aD~Vv~a~G~~p~ 252 (415)
T 3lxd_A 221 EGDGTKVTGVRMQDGSVIPADIVIVGIGIVPC 252 (415)
T ss_dssp EESSSBEEEEEESSSCEEECSEEEECSCCEES
T ss_pred EecCCcEEEEEeCCCCEEEcCEEEECCCCccC
Confidence 13333333 379999999998764
|
| >1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=1e-05 Score=79.65 Aligned_cols=91 Identities=15% Similarity=0.211 Sum_probs=69.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||||+.|+.+|..|++ .|.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 184 ~~~~vvViGgG~ig~E~A~~l~~--~G~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~gV~i~~~~~v~~ 251 (482)
T 1ojt_A 184 VPGKLLIIGGGIIGLEMGTVYST--LGSRLDVVEMMDGLM--------QG--ADRDLVKVWQKQNEYRFDNIMVNTKTVA 251 (482)
T ss_dssp CCSEEEEESCSHHHHHHHHHHHH--HTCEEEEECSSSSSS--------TT--SCHHHHHHHHHHHGGGEEEEECSCEEEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEECCccc--------cc--cCHHHHHHHHHHHHhcCCEEEECCEEEE
Confidence 36899999999999999999999 799999999986642 22 2445666777788888999998866532
Q ss_pred --------Eeeecc----c-ccccCEEEEeeCCCCC
Q psy4525 92 --------DISLGD----L-TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 --------~~~~~~----~-~~~yd~lvlAtG~~~~ 114 (388)
.+...+ . ...+|.||+|+|..|+
T Consensus 252 i~~~~~~~~v~~~~~~~~g~~~~~D~vv~a~G~~p~ 287 (482)
T 1ojt_A 252 VEPKEDGVYVTFEGANAPKEPQRYDAVLVAAGRAPN 287 (482)
T ss_dssp EEEETTEEEEEEESSSCCSSCEEESCEEECCCEEEC
T ss_pred EEEcCCeEEEEEeccCCCceEEEcCEEEECcCCCcC
Confidence 123322 2 2379999999997763
|
| >2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=1.3e-05 Score=78.52 Aligned_cols=91 Identities=14% Similarity=0.107 Sum_probs=68.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..|++ .|.+|+++++.+.+. +. ...++...+.+.+++.|++++.++.+..
T Consensus 165 ~~~~vvVvGgG~~g~e~A~~l~~--~G~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~gv~i~~~~~v~~ 232 (463)
T 2r9z_A 165 QPKRVAIIGAGYIGIELAGLLRS--FGSEVTVVALEDRLL--------FQ--FDPLLSATLAENMHAQGIETHLEFAVAA 232 (463)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHTTCEEESSCCEEE
T ss_pred cCCEEEEECCCHHHHHHHHHHHh--cCCEEEEEEcCCccc--------cc--cCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 45799999999999999999999 899999999886542 21 2334556667777788999998765421
Q ss_pred --------Eeeecccc--cccCEEEEeeCCCCC
Q psy4525 92 --------DISLGDLT--NAYHAVVLTYGADND 114 (388)
Q Consensus 92 --------~~~~~~~~--~~yd~lvlAtG~~~~ 114 (388)
.+...+++ ..+|.||+|+|..|.
T Consensus 233 i~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~ 265 (463)
T 2r9z_A 233 LERDAQGTTLVAQDGTRLEGFDSVIWAVGRAPN 265 (463)
T ss_dssp EEEETTEEEEEETTCCEEEEESEEEECSCEEES
T ss_pred EEEeCCeEEEEEeCCcEEEEcCEEEECCCCCcC
Confidence 23333443 489999999997763
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=3.5e-06 Score=83.67 Aligned_cols=41 Identities=24% Similarity=0.267 Sum_probs=38.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCC-CcEEEEcCCCCCCCce
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQ-STVDIYEKLPVPFGLV 54 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g-~~v~lie~~~~~gg~~ 54 (388)
..++|+|||||+|||+||..|.+ .| .+|+|+|+.+.+||.+
T Consensus 7 ~~~~VvIIGaG~aGL~AA~~L~~--~G~~~V~VlEa~~riGGr~ 48 (516)
T 1rsg_A 7 AKKKVIIIGAGIAGLKAASTLHQ--NGIQDCLVLEARDRVGGRL 48 (516)
T ss_dssp EEEEEEEECCBHHHHHHHHHHHH--TTCCSEEEECSSSSSBTTC
T ss_pred CCCcEEEECCCHHHHHHHHHHHh--cCCCCEEEEeCCCCCCCce
Confidence 34799999999999999999999 89 9999999999999976
|
| >2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G* | Back alignment and structure |
|---|
Probab=97.99 E-value=5.6e-06 Score=80.80 Aligned_cols=42 Identities=14% Similarity=0.030 Sum_probs=39.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~ 55 (388)
..+||+|||||++|++||..|++ .|.+|+++|+++.+||.+.
T Consensus 10 ~~~dvvVIGaG~~GL~aA~~La~--~G~~V~vlE~~~~~GG~~~ 51 (453)
T 2bcg_G 10 TDYDVIVLGTGITECILSGLLSV--DGKKVLHIDKQDHYGGEAA 51 (453)
T ss_dssp CBCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCGGGC
T ss_pred ccCCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCCCCCcccc
Confidence 45899999999999999999999 8999999999999999863
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=97.99 E-value=8.8e-06 Score=78.18 Aligned_cols=36 Identities=22% Similarity=0.418 Sum_probs=32.0
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
+||+|||||++|+++|..|++..+|.+|+|+|+...
T Consensus 37 ~dVvIIGaGi~Gls~A~~La~~~pG~~V~vlE~~~~ 72 (405)
T 3c4n_A 37 FDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGL 72 (405)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSCS
T ss_pred CCEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 689999999999999999999333999999998753
|
| >3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.7e-05 Score=76.20 Aligned_cols=92 Identities=17% Similarity=0.187 Sum_probs=69.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++++|||+|+.|+.+|..+.+ .+.+|+++++.+.+. +. ....++...+.+.+++.|++++.++.+..
T Consensus 141 ~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtvv~~~~~~~--------~~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~~ 209 (404)
T 3fg2_P 141 DKKHVVVIGAGFIGLEFAATARA--KGLEVDVVELAPRVM--------AR-VVTPEISSYFHDRHSGAGIRMHYGVRATE 209 (404)
T ss_dssp GCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSTT--------TT-TSCHHHHHHHHHHHHHTTCEEECSCCEEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHh--CCCEEEEEeCCCcch--------hh-ccCHHHHHHHHHHHHhCCcEEEECCEEEE
Confidence 35799999999999999999999 899999999886542 11 12345666777778888999998765522
Q ss_pred ---------Eeeecccc-cccCEEEEeeCCCCC
Q psy4525 92 ---------DISLGDLT-NAYHAVVLTYGADND 114 (388)
Q Consensus 92 ---------~~~~~~~~-~~yd~lvlAtG~~~~ 114 (388)
.+.+.+++ ..+|.||+|+|..+.
T Consensus 210 i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G~~p~ 242 (404)
T 3fg2_P 210 IAAEGDRVTGVVLSDGNTLPCDLVVVGVGVIPN 242 (404)
T ss_dssp EEEETTEEEEEEETTSCEEECSEEEECCCEEEC
T ss_pred EEecCCcEEEEEeCCCCEEEcCEEEECcCCccC
Confidence 13333443 379999999998763
|
| >3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=9.7e-06 Score=79.74 Aligned_cols=91 Identities=15% Similarity=0.149 Sum_probs=68.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++|+|||+|++|+.+|..|++ .|.+|+++++.+.+. | ....++...+.+.+++.|++++.++.+..
T Consensus 185 ~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l--------~--~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 252 (480)
T 3cgb_A 185 KVEDVTIIGGGAIGLEMAETFVE--LGKKVRMIERNDHIG--------T--IYDGDMAEYIYKEADKHHIEILTNENVKA 252 (480)
T ss_dssp CCCEEEEECCHHHHHHHHHHHHH--TTCEEEEECCGGGTT--------S--SSCHHHHHHHHHHHHHTTCEEECSCCEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHh--cCCeEEEEEeCCchh--------h--cCCHHHHHHHHHHHHHcCcEEEcCCEEEE
Confidence 56899999999999999999999 899999999886543 2 12345666777778888999997765532
Q ss_pred E--------eeecccccccCEEEEeeCCCCC
Q psy4525 92 D--------ISLGDLTNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~--------~~~~~~~~~yd~lvlAtG~~~~ 114 (388)
. +..++....+|.||+|+|..+.
T Consensus 253 i~~~~~v~~v~~~~~~i~~D~vi~a~G~~p~ 283 (480)
T 3cgb_A 253 FKGNERVEAVETDKGTYKADLVLVSVGVKPN 283 (480)
T ss_dssp EEESSBEEEEEETTEEEECSEEEECSCEEES
T ss_pred EEcCCcEEEEEECCCEEEcCEEEECcCCCcC
Confidence 1 2223333479999999997763
|
| >3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=7.7e-06 Score=78.75 Aligned_cols=92 Identities=15% Similarity=0.011 Sum_probs=68.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++++|||+|+.|+.+|..+.+ .+.+|+++++.+.+... ....++...+.+.+++.|++++.++.+..
T Consensus 142 ~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtvv~~~~~~l~~---------~~~~~~~~~l~~~l~~~GV~i~~~~~v~~ 210 (410)
T 3ef6_A 142 SATRLLIVGGGLIGCEVATTARK--LGLSVTILEAGDELLVR---------VLGRRIGAWLRGLLTELGVQVELGTGVVG 210 (410)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSSHH---------HHCHHHHHHHHHHHHHHTCEEECSCCEEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCccchh---------hcCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 46899999999999999999999 89999999988654210 12345666677777788999998766532
Q ss_pred --------Eeeecccc-cccCEEEEeeCCCCC
Q psy4525 92 --------DISLGDLT-NAYHAVVLTYGADND 114 (388)
Q Consensus 92 --------~~~~~~~~-~~yd~lvlAtG~~~~ 114 (388)
.+.+.+++ ..+|.||+|+|..+.
T Consensus 211 i~~~~~~~~v~~~dg~~i~aD~Vv~a~G~~p~ 242 (410)
T 3ef6_A 211 FSGEGQLEQVMASDGRSFVADSALICVGAEPA 242 (410)
T ss_dssp EECSSSCCEEEETTSCEEECSEEEECSCEEEC
T ss_pred EeccCcEEEEEECCCCEEEcCEEEEeeCCeec
Confidence 13333333 379999999998763
|
| >1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=1.1e-05 Score=78.53 Aligned_cols=91 Identities=16% Similarity=0.230 Sum_probs=67.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..|.+ .|.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 166 ~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 233 (450)
T 1ges_A 166 LPERVAVVGAGYIGVELGGVING--LGAKTHLFEMFDAPL--------PS--FDPMISETLVEVMNAEGPQLHTNAIPKA 233 (450)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHHSCEEECSCCEEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHh--cCCEEEEEEeCCchh--------hh--hhHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 46899999999999999999999 899999999886542 21 2344666677777778999998765532
Q ss_pred ---------Eeeecccc-cccCEEEEeeCCCCC
Q psy4525 92 ---------DISLGDLT-NAYHAVVLTYGADND 114 (388)
Q Consensus 92 ---------~~~~~~~~-~~yd~lvlAtG~~~~ 114 (388)
.+...+++ ..+|.||+|+|..|.
T Consensus 234 i~~~~~~~~~v~~~~g~~i~~D~vv~a~G~~p~ 266 (450)
T 1ges_A 234 VVKNTDGSLTLELEDGRSETVDCLIWAIGREPA 266 (450)
T ss_dssp EEECTTSCEEEEETTSCEEEESEEEECSCEEES
T ss_pred EEEeCCcEEEEEECCCcEEEcCEEEECCCCCcC
Confidence 12233332 379999999997763
|
| >1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... | Back alignment and structure |
|---|
Probab=97.97 E-value=5.7e-06 Score=82.16 Aligned_cols=40 Identities=25% Similarity=0.265 Sum_probs=37.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
.++|+|||||+||++||..|++ .|++|+|+|+++.+||.+
T Consensus 4 ~~~vvIIGaG~aGL~aA~~L~~--~G~~V~vlE~~~~~GGr~ 43 (520)
T 1s3e_A 4 KCDVVVVGGGISGMAAAKLLHD--SGLNVVVLEARDRVGGRT 43 (520)
T ss_dssp BCSEEEECCBHHHHHHHHHHHH--TTCCEEEECSSSSSBTTC
T ss_pred CceEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCCCCCCce
Confidence 4799999999999999999999 899999999999999876
|
| >2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A* | Back alignment and structure |
|---|
Probab=97.95 E-value=8.3e-06 Score=80.26 Aligned_cols=42 Identities=31% Similarity=0.448 Sum_probs=38.8
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
...++|+|||||++||+||..|++ .|.+|+|+|+.+.+||.+
T Consensus 9 ~~~~~v~IIGaG~aGl~aA~~L~~--~g~~v~v~E~~~~~GG~~ 50 (489)
T 2jae_A 9 KGSHSVVVLGGGPAGLCSAFELQK--AGYKVTVLEARTRPGGRV 50 (489)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSCTTC
T ss_pred cCCCCEEEECCCHHHHHHHHHHHH--CCCCEEEEeccCCCCCce
Confidence 456899999999999999999999 899999999999999865
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.95 E-value=6.4e-06 Score=79.44 Aligned_cols=39 Identities=18% Similarity=0.272 Sum_probs=36.7
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
+||+|||||++|+++|..|++ .|.+|+|+|+++.+||.+
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~--~G~~V~vlE~~~~~GG~~ 39 (421)
T 3nrn_A 1 MRAVVVGAGLGGLLAGAFLAR--NGHEIIVLEKSAMIGGRF 39 (421)
T ss_dssp CEEEEESCSHHHHHHHHHHHH--TTCEEEEECSSSSSCTTS
T ss_pred CcEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCCCcee
Confidence 489999999999999999999 899999999999998876
|
| >2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7 | Back alignment and structure |
|---|
Probab=97.95 E-value=2.8e-05 Score=68.68 Aligned_cols=46 Identities=9% Similarity=0.076 Sum_probs=33.2
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
.|++++ +..++++..+ ++.+..+.+ .+++++.||.||+|+|..++.
T Consensus 82 ~gv~i~-~~~v~~i~~~-~~~v~~v~~--------~~g~~i~a~~VV~A~G~~s~~ 127 (232)
T 2cul_A 82 RPLHLF-QATATGLLLE-GNRVVGVRT--------WEGPPARGEKVVLAVGSFLGA 127 (232)
T ss_dssp TTEEEE-ECCEEEEEEE-TTEEEEEEE--------TTSCCEECSEEEECCTTCSSC
T ss_pred CCcEEE-EeEEEEEEEe-CCEEEEEEE--------CCCCEEECCEEEECCCCChhh
Confidence 388888 5688888764 355555654 334579999999999997654
|
| >1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=2.8e-05 Score=76.83 Aligned_cols=90 Identities=19% Similarity=0.181 Sum_probs=68.5
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE-
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ- 91 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~- 91 (388)
+++++|||+|+.|+.+|..|++ .|.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 176 ~~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~gv~i~~~~~v~~i 243 (500)
T 1onf_A 176 SKKIGIVGSGYIAVELINVIKR--LGIDSYIFARGNRIL--------RK--FDESVINVLENDMKKNNINIVTFADVVEI 243 (500)
T ss_dssp CSEEEEECCSHHHHHHHHHHHT--TTCEEEEECSSSSSC--------TT--SCHHHHHHHHHHHHHTTCEEECSCCEEEE
T ss_pred CCeEEEECChHHHHHHHHHHHH--cCCeEEEEecCCccC--------cc--cchhhHHHHHHHHHhCCCEEEECCEEEEE
Confidence 6899999999999999999999 899999999986642 21 2345666777778888999998765532
Q ss_pred --------Eeeecccc--cccCEEEEeeCCCCC
Q psy4525 92 --------DISLGDLT--NAYHAVVLTYGADND 114 (388)
Q Consensus 92 --------~~~~~~~~--~~yd~lvlAtG~~~~ 114 (388)
.+...+++ ..+|.||+|+|..|.
T Consensus 244 ~~~~~~~~~v~~~~g~~~~~~D~vi~a~G~~p~ 276 (500)
T 1onf_A 244 KKVSDKNLSIHLSDGRIYEHFDHVIYCVGRSPD 276 (500)
T ss_dssp EESSTTCEEEEETTSCEEEEESEEEECCCBCCT
T ss_pred EEcCCceEEEEECCCcEEEECCEEEECCCCCcC
Confidence 12333333 479999999998774
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=97.93 E-value=7.2e-06 Score=79.00 Aligned_cols=39 Identities=26% Similarity=0.574 Sum_probs=36.7
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
++|+|||||.+|++||..|++ .|.+|+|+|+++.+||..
T Consensus 1 ~dVvVIGaGiaGLsaA~~La~--~G~~V~vlE~~~~~GG~~ 39 (425)
T 3ka7_A 1 MKTVVIGAGLGGLLSAARLSK--AGHEVEVFERLPITGGRF 39 (425)
T ss_dssp CEEEEECCBHHHHHHHHHHHH--TTCEEEEECSSSSSBTTS
T ss_pred CcEEEECCCHHHHHHHHHHHh--CCCceEEEeCCCCCCCce
Confidence 489999999999999999999 899999999999998875
|
| >1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.92 E-value=8.2e-06 Score=78.29 Aligned_cols=41 Identities=24% Similarity=0.315 Sum_probs=38.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCC-CCcEEEEcCCCCCCCce
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLP-QSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~-g~~v~lie~~~~~gg~~ 54 (388)
..++|+|||||++|+++|..|++ . |.+|+|+|+.+.+||.+
T Consensus 6 ~~~~v~IiGaG~~Gl~aA~~L~~--~~g~~v~v~E~~~~~GG~~ 47 (399)
T 1v0j_A 6 ARFDLFVVGSGFFGLTIAERVAT--QLDKRVLVLERRPHIGGNA 47 (399)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHH--HSCCCEEEECSSSSSSGGG
T ss_pred ccCCEEEECCCHHHHHHHHHHHH--hCCCCEEEEeCCCCCCCee
Confidence 35899999999999999999999 6 99999999999999987
|
| >1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=3.2e-05 Score=75.83 Aligned_cols=92 Identities=13% Similarity=0.097 Sum_probs=68.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..|++ .|.+|+++++.+.+. |. ....++...+.+.+++.|++++.++.+..
T Consensus 177 ~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l--------~~-~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 245 (474)
T 1zmd_A 177 VPEKMVVIGAGVIGVELGSVWQR--LGADVTAVEFLGHVG--------GV-GIDMEISKNFQRILQKQGFKFKLNTKVTG 245 (474)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSS--------CS-SCCHHHHHHHHHHHHHTTCEEECSEEEEE
T ss_pred cCceEEEECCCHHHHHHHHHHHH--cCCEEEEEeccCccC--------Cc-ccCHHHHHHHHHHHHHCCCEEEeCceEEE
Confidence 35899999999999999999999 899999999986642 20 12345666677778888999998876632
Q ss_pred E-------eee-------ccc-ccccCEEEEeeCCCCC
Q psy4525 92 D-------ISL-------GDL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~-------~~~-------~~~-~~~yd~lvlAtG~~~~ 114 (388)
. +.+ .+. ...+|.||+|+|..|.
T Consensus 246 i~~~~~~~~~v~~~~~~~~~~~~i~~D~vv~a~G~~p~ 283 (474)
T 1zmd_A 246 ATKKSDGKIDVSIEAASGGKAEVITCDVLLVCIGRRPF 283 (474)
T ss_dssp EEECTTSCEEEEEEETTSCCCEEEEESEEEECSCEEEC
T ss_pred EEEcCCceEEEEEEecCCCCceEEEcCEEEECcCCCcC
Confidence 1 111 111 2378999999997763
|
| >2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis} | Back alignment and structure |
|---|
Probab=97.90 E-value=2.2e-05 Score=76.52 Aligned_cols=92 Identities=15% Similarity=0.089 Sum_probs=67.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..+++ .|.+|+++++.+.+. |. ....++...+.+.+++.|++++.++.+..
T Consensus 148 ~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l--------~~-~~~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 216 (452)
T 2cdu_A 148 KAKTITIIGSGYIGAELAEAYSN--QNYNVNLIDGHERVL--------YK-YFDKEFTDILAKDYEAHGVNLVLGSKVAA 216 (452)
T ss_dssp GCSEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSTT--------TT-TSCHHHHHHHHHHHHHTTCEEEESSCEEE
T ss_pred cCCeEEEECcCHHHHHHHHHHHh--cCCEEEEEEcCCchh--------hh-hhhhhHHHHHHHHHHHCCCEEEcCCeeEE
Confidence 46799999999999999999999 899999999886542 21 12345666777778888999998765532
Q ss_pred E---------eeecccccccCEEEEeeCCCCC
Q psy4525 92 D---------ISLGDLTNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~---------~~~~~~~~~yd~lvlAtG~~~~ 114 (388)
. +..+.....+|.||+|+|..|.
T Consensus 217 i~~~~~~v~~v~~~g~~i~~D~vv~a~G~~p~ 248 (452)
T 2cdu_A 217 FEEVDDEIITKTLDGKEIKSDIAILCIGFRPN 248 (452)
T ss_dssp EEEETTEEEEEETTSCEEEESEEEECCCEEEC
T ss_pred EEcCCCeEEEEEeCCCEEECCEEEECcCCCCC
Confidence 1 1122222378999999997763
|
| >2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=2.4e-05 Score=76.52 Aligned_cols=91 Identities=20% Similarity=0.215 Sum_probs=68.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..|.+ .|.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 170 ~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~gv~i~~~~~v~~ 237 (464)
T 2a8x_A 170 LPKSIIIAGAGAIGMEFGYVLKN--YGVDVTIVEFLPRAL--------PN--EDADVSKEIEKQFKKLGVTILTATKVES 237 (464)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHHTCEEECSCEEEE
T ss_pred cCCeEEEECCcHHHHHHHHHHHH--cCCeEEEEEcCCccc--------cc--cCHHHHHHHHHHHHHcCCEEEeCcEEEE
Confidence 45899999999999999999999 899999999986642 32 2345666677777778999998866532
Q ss_pred E--------eeec-cc---ccccCEEEEeeCCCCC
Q psy4525 92 D--------ISLG-DL---TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~--------~~~~-~~---~~~yd~lvlAtG~~~~ 114 (388)
. +... +. ...+|.||+|+|..|.
T Consensus 238 i~~~~~~~~v~~~~~g~~~~~~~D~vv~a~G~~p~ 272 (464)
T 2a8x_A 238 IADGGSQVTVTVTKDGVAQELKAEKVLQAIGFAPN 272 (464)
T ss_dssp EEECSSCEEEEEESSSCEEEEEESEEEECSCEEEC
T ss_pred EEEcCCeEEEEEEcCCceEEEEcCEEEECCCCCcc
Confidence 1 2221 22 2379999999997763
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.88 E-value=9.6e-06 Score=79.44 Aligned_cols=39 Identities=18% Similarity=0.292 Sum_probs=36.9
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCC--cEEEEcCCCCCCCce
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQS--TVDIYEKLPVPFGLV 54 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~--~v~lie~~~~~gg~~ 54 (388)
++|+|||||++||++|.+|++ .|. +|+|+|+.+.+||.+
T Consensus 3 ~dVvVIGaGiaGLsaA~~L~~--~G~~~~V~vlEa~~~~GG~~ 43 (477)
T 3nks_A 3 RTVVVLGGGISGLAASYHLSR--APCPPKVVLVESSERLGGWI 43 (477)
T ss_dssp CEEEEECCBHHHHHHHHHHHT--SSSCCEEEEECSSSSSBTTC
T ss_pred ceEEEECCcHHHHHHHHHHHh--CCCCCcEEEEeCCCCCCCce
Confidence 699999999999999999999 888 999999999999877
|
| >3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=1.1e-05 Score=76.97 Aligned_cols=42 Identities=26% Similarity=0.208 Sum_probs=38.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~ 55 (388)
..++|+|||||++|+++|..|++ .|.+|+|+|+.+.+||.+.
T Consensus 28 ~~~dv~IIGaG~aGl~aA~~l~~--~g~~v~v~E~~~~~GG~~~ 69 (397)
T 3hdq_A 28 KGFDYLIVGAGFAGSVLAERLAS--SGQRVLIVDRRPHIGGNAY 69 (397)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSSGGGC
T ss_pred CCCCEEEECccHHHHHHHHHHHH--CCCceEEEeccCCCCCccc
Confidence 35799999999999999999999 8999999999999999873
|
| >1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=4.5e-05 Score=75.34 Aligned_cols=91 Identities=16% Similarity=0.173 Sum_probs=68.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..+.+ .+.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 181 ~~~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~GV~i~~~~~V~~ 248 (499)
T 1xdi_A 181 LPDHLIVVGSGVTGAEFVDAYTE--LGVPVTVVASQDHVL--------PY--EDADAALVLEESFAERGVRLFKNARAAS 248 (499)
T ss_dssp CCSSEEEESCSHHHHHHHHHHHH--TTCCEEEECSSSSSS--------CC--SSHHHHHHHHHHHHHTTCEEETTCCEEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCccc--------cc--cCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 45899999999999999999999 899999999986642 22 2345667777778888999998866532
Q ss_pred E--------eeeccc-ccccCEEEEeeCCCCC
Q psy4525 92 D--------ISLGDL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~--------~~~~~~-~~~yd~lvlAtG~~~~ 114 (388)
. +...+. ...+|.||+|+|..|.
T Consensus 249 i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~ 280 (499)
T 1xdi_A 249 VTRTGAGVLVTMTDGRTVEGSHALMTIGSVPN 280 (499)
T ss_dssp EEECSSSEEEEETTSCEEEESEEEECCCEEEC
T ss_pred EEEeCCEEEEEECCCcEEEcCEEEECCCCCcC
Confidence 1 222222 2379999999998764
|
| >2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=2.4e-05 Score=77.27 Aligned_cols=93 Identities=14% Similarity=0.072 Sum_probs=68.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCC-CCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLP-QSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~-g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
.+++++|||+|+.|+.+|..|.+..+ |.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+.
T Consensus 190 ~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~GV~i~~~~~v~ 259 (495)
T 2wpf_A 190 PPRRVLTVGGGFISVEFAGIFNAYKPPGGKVTLCYRNNLIL--------RG--FDETIREEVTKQLTANGIEIMTNENPA 259 (495)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSC--------TT--SCHHHHHHHHHHHHHTTCEEEESCCEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHhhCCCCCeEEEEEcCCccc--------cc--cCHHHHHHHHHHHHhCCCEEEeCCEEE
Confidence 45799999999999999999999321 99999999986542 22 234566677777888899999886653
Q ss_pred E---------Eeeeccc-ccccCEEEEeeCCCCC
Q psy4525 91 Q---------DISLGDL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 91 ~---------~~~~~~~-~~~yd~lvlAtG~~~~ 114 (388)
. .+...++ ...+|.||+|+|..|.
T Consensus 260 ~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~ 293 (495)
T 2wpf_A 260 KVSLNTDGSKHVTFESGKTLDVDVVMMAIGRIPR 293 (495)
T ss_dssp EEEECTTSCEEEEETTSCEEEESEEEECSCEEEC
T ss_pred EEEEcCCceEEEEECCCcEEEcCEEEECCCCccc
Confidence 2 1223333 2379999999997763
|
| >1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=3.1e-05 Score=75.02 Aligned_cols=91 Identities=13% Similarity=0.122 Sum_probs=66.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++|+|||+|+.|+.+|..|++ .|.+|+++++.+.+. |. ....++...+.+.+++.|++++.++.+..
T Consensus 148 ~~~~vvViGgG~~g~E~A~~l~~--~G~~Vtlv~~~~~~l--------~~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~~ 216 (431)
T 1q1r_A 148 ADNRLVVIGGGYIGLEVAATAIK--ANMHVTLLDTAARVL--------ER-VTAPPVSAFYEHLHREAGVDIRTGTQVCG 216 (431)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSTT--------TT-TSCHHHHHHHHHHHHHHTCEEECSCCEEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHh--CCCEEEEEEeCCccc--------cc-hhhHHHHHHHHHHHHhCCeEEEeCCEEEE
Confidence 46899999999999999999999 899999999886542 11 12344556666777778999987755421
Q ss_pred -----------Eeeecccc-cccCEEEEeeCCCC
Q psy4525 92 -----------DISLGDLT-NAYHAVVLTYGADN 113 (388)
Q Consensus 92 -----------~~~~~~~~-~~yd~lvlAtG~~~ 113 (388)
.+...++. ..+|.||+|+|..+
T Consensus 217 i~~~~~~~~v~~v~~~~G~~i~~D~Vv~a~G~~p 250 (431)
T 1q1r_A 217 FEMSTDQQKVTAVLCEDGTRLPADLVIAGIGLIP 250 (431)
T ss_dssp EEECTTTCCEEEEEETTSCEEECSEEEECCCEEE
T ss_pred EEeccCCCcEEEEEeCCCCEEEcCEEEECCCCCc
Confidence 12222332 37999999999766
|
| >2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.87 E-value=2.2e-05 Score=77.18 Aligned_cols=91 Identities=16% Similarity=0.124 Sum_probs=68.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..|.+ .|.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 184 ~~~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~Gv~i~~~~~v~~ 251 (479)
T 2hqm_A 184 QPKKVVVVGAGYIGIELAGVFHG--LGSETHLVIRGETVL--------RK--FDECIQNTITDHYVKEGINVHKLSKIVK 251 (479)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHH--TTCEEEEECSSSSSC--------TT--SCHHHHHHHHHHHHHHTCEEECSCCEEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHH--cCCceEEEEeCCccc--------cc--cCHHHHHHHHHHHHhCCeEEEeCCEEEE
Confidence 46899999999999999999999 899999999986642 22 2345666677777778999998765421
Q ss_pred ----------Eeeeccc--ccccCEEEEeeCCCCC
Q psy4525 92 ----------DISLGDL--TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ----------~~~~~~~--~~~yd~lvlAtG~~~~ 114 (388)
.+...++ ...+|.||+|+|..|.
T Consensus 252 i~~~~~~~~~~v~~~~G~~~i~~D~vv~a~G~~p~ 286 (479)
T 2hqm_A 252 VEKNVETDKLKIHMNDSKSIDDVDELIWTIGRKSH 286 (479)
T ss_dssp EEECC-CCCEEEEETTSCEEEEESEEEECSCEEEC
T ss_pred EEEcCCCcEEEEEECCCcEEEEcCEEEECCCCCCc
Confidence 1333333 3479999999997764
|
| >3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=3.2e-05 Score=78.00 Aligned_cols=91 Identities=12% Similarity=0.107 Sum_probs=69.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..+.+ .|.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 186 ~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~GV~i~~~~~v~~ 253 (588)
T 3ics_A 186 KPRHATVIGGGFIGVEMVENLRE--RGIEVTLVEMANQVM--------PP--IDYEMAAYVHEHMKNHDVELVFEDGVDA 253 (588)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSC--------TT--SCHHHHHHHHHHHHHTTCEEECSCCEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHh--CCCeEEEEecCCccc--------cc--CCHHHHHHHHHHHHHcCCEEEECCeEEE
Confidence 35799999999999999999999 899999999886542 22 2345666777778888999998766532
Q ss_pred ------Eeeecccc-cccCEEEEeeCCCCC
Q psy4525 92 ------DISLGDLT-NAYHAVVLTYGADND 114 (388)
Q Consensus 92 ------~~~~~~~~-~~yd~lvlAtG~~~~ 114 (388)
.+...+.+ ..+|.||+|+|..+.
T Consensus 254 i~~~~~~v~~~~g~~i~~D~Vi~a~G~~p~ 283 (588)
T 3ics_A 254 LEENGAVVRLKSGSVIQTDMLILAIGVQPE 283 (588)
T ss_dssp EEGGGTEEEETTSCEEECSEEEECSCEEEC
T ss_pred EecCCCEEEECCCCEEEcCEEEEccCCCCC
Confidence 13333332 379999999997663
|
| >1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=4.2e-05 Score=70.46 Aligned_cols=89 Identities=16% Similarity=0.146 Sum_probs=65.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++|+|||+|+.|+.+|..|.+ .+.+|+++++.+.+. ....+.+.+.+.+++.+++++.++.+..
T Consensus 144 ~~~~v~ViG~G~~g~e~A~~l~~--~g~~Vtlv~~~~~~~------------~~~~~~~~l~~~l~~~gv~i~~~~~v~~ 209 (320)
T 1trb_A 144 RNQKVAVIGGGNTAVEEALYLSN--IASEVHLIHRRDGFR------------AEKILIKRLMDKVENGNIILHTNRTLEE 209 (320)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTT--TSSEEEEECSSSSCC------------CCHHHHHHHHHHHHTSSEEEECSCEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHh--cCCeEEEEEeCCccc------------cCHHHHHHHHHhcccCCeEEEcCceeEE
Confidence 45799999999999999999999 899999999875431 1234555666677788999998766532
Q ss_pred E---------eeecc----c---ccccCEEEEeeCCCCC
Q psy4525 92 D---------ISLGD----L---TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~---------~~~~~----~---~~~yd~lvlAtG~~~~ 114 (388)
. +...+ . ...+|.||+|+|..+.
T Consensus 210 i~~~~~~v~~v~~~~~~~~g~~~~i~~D~vv~a~G~~p~ 248 (320)
T 1trb_A 210 VTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPN 248 (320)
T ss_dssp EEECSSSEEEEEEECCTTCCCCEEEECSEEEECSCEEES
T ss_pred EEcCCCceEEEEEEeccCCCceEEEEcCEEEEEeCCCCC
Confidence 1 33222 2 2378999999997763
|
| >2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=8.2e-06 Score=79.41 Aligned_cols=40 Identities=30% Similarity=0.417 Sum_probs=37.5
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
.++|+|||||++|++||..|++ .|.+|+|+|+.+.+||.+
T Consensus 5 ~~~v~iiG~G~~Gl~aA~~l~~--~g~~v~v~E~~~~~GG~~ 44 (453)
T 2yg5_A 5 QRDVAIVGAGPSGLAAATALRK--AGLSVAVIEARDRVGGRT 44 (453)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTTC
T ss_pred cCCEEEECCCHHHHHHHHHHHH--CCCcEEEEECCCCCCCce
Confidence 4699999999999999999999 899999999999999876
|
| >1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=2.5e-05 Score=76.94 Aligned_cols=93 Identities=13% Similarity=0.063 Sum_probs=68.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCC-CCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLP-QSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~-g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
.+++++|||+|+.|+.+|..|.+..+ |.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+.
T Consensus 186 ~~~~vvViGgG~ig~E~A~~l~~~~~~g~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~GV~i~~~~~v~ 255 (490)
T 1fec_A 186 APKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL--------RG--FDSELRKQLTEQLRANGINVRTHENPA 255 (490)
T ss_dssp CCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS--------TT--SCHHHHHHHHHHHHHTTEEEEETCCEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHhhccCcCeEEEEEcCCCcc--------cc--cCHHHHHHHHHHHHhCCCEEEeCCEEE
Confidence 45799999999999999999999211 99999999986642 22 234566677777888899999876553
Q ss_pred E---------Eeeeccc-ccccCEEEEeeCCCCC
Q psy4525 91 Q---------DISLGDL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 91 ~---------~~~~~~~-~~~yd~lvlAtG~~~~ 114 (388)
. .+...++ ...+|.||+|+|..|.
T Consensus 256 ~i~~~~~~~~~v~~~~G~~i~~D~vv~a~G~~p~ 289 (490)
T 1fec_A 256 KVTKNADGTRHVVFESGAEADYDVVMLAIGRVPR 289 (490)
T ss_dssp EEEECTTSCEEEEETTSCEEEESEEEECSCEEES
T ss_pred EEEEcCCCEEEEEECCCcEEEcCEEEEccCCCcC
Confidence 2 1223333 2479999999997764
|
| >2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=1.3e-05 Score=78.54 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=37.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
..++|+|||||++|++||..|++ .|.+|+|+|+.+.+||.+
T Consensus 15 ~~~~v~iiG~G~~Gl~aa~~l~~--~g~~v~v~E~~~~~GGr~ 55 (478)
T 2ivd_A 15 TGMNVAVVGGGISGLAVAHHLRS--RGTDAVLLESSARLGGAV 55 (478)
T ss_dssp --CCEEEECCBHHHHHHHHHHHT--TTCCEEEECSSSSSBTTC
T ss_pred CCCcEEEECCCHHHHHHHHHHHH--CCCCEEEEEcCCCCCcee
Confidence 45799999999999999999999 899999999999999876
|
| >3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.84 E-value=4.6e-05 Score=75.07 Aligned_cols=91 Identities=13% Similarity=0.145 Sum_probs=68.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++|+|||+|+.|+.+|..|.+ .|.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 197 ~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~gV~v~~~~~v~~ 264 (491)
T 3urh_A 197 VPASMIVVGGGVIGLELGSVWAR--LGAKVTVVEFLDTIL--------GG--MDGEVAKQLQRMLTKQGIDFKLGAKVTG 264 (491)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--HTCEEEEECSSSSSS--------SS--SCHHHHHHHHHHHHHTTCEEECSEEEEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHH--cCCEEEEEecccccc--------cc--CCHHHHHHHHHHHHhCCCEEEECCeEEE
Confidence 46899999999999999999999 799999999887643 21 2345666677778888999998876532
Q ss_pred E--------eeecc---c---ccccCEEEEeeCCCCC
Q psy4525 92 D--------ISLGD---L---TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~--------~~~~~---~---~~~yd~lvlAtG~~~~ 114 (388)
. +...+ + ...+|.||+|+|..|.
T Consensus 265 i~~~~~~~~v~~~~~~~g~~~~i~~D~Vi~a~G~~p~ 301 (491)
T 3urh_A 265 AVKSGDGAKVTFEPVKGGEATTLDAEVVLIATGRKPS 301 (491)
T ss_dssp EEEETTEEEEEEEETTSCCCEEEEESEEEECCCCEEC
T ss_pred EEEeCCEEEEEEEecCCCceEEEEcCEEEEeeCCccC
Confidence 1 22221 2 2379999999997763
|
| >1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 | Back alignment and structure |
|---|
Probab=97.83 E-value=1.4e-05 Score=78.98 Aligned_cols=41 Identities=20% Similarity=0.286 Sum_probs=37.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
..++|+|||||++||++|..|++ .|++|+|+|+.+.+||.+
T Consensus 12 ~~~~v~iiG~G~~Gl~aA~~l~~--~g~~v~v~E~~~~~GG~~ 52 (504)
T 1sez_A 12 SAKRVAVIGAGVSGLAAAYKLKI--HGLNVTVFEAEGKAGGKL 52 (504)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHT--TSCEEEEECSSSSSCSSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--CCCcEEEEEeCCCCCCce
Confidence 45899999999999999999999 899999999999999876
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=97.83 E-value=1.5e-05 Score=74.95 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=33.7
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
.+||+|||||++|+++|..|++ .|.+|+|+|+.+.++
T Consensus 4 ~~dvvIIG~G~~Gl~~A~~La~--~G~~V~vlE~~~~~~ 40 (369)
T 3dme_A 4 DIDCIVIGAGVVGLAIARALAA--GGHEVLVAEAAEGIG 40 (369)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSS
T ss_pred cCCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCCC
Confidence 4799999999999999999999 899999999986543
|
| >3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase, structural genomics structure initiative; 2.75A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.83 E-value=5.8e-05 Score=73.43 Aligned_cols=90 Identities=17% Similarity=0.092 Sum_probs=66.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++++|||+|+.|+.+|..+++ .|.+|+++++.+.+. +. ....++...+.+.+++. ++++.++.+..
T Consensus 147 ~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l--------~~-~~~~~~~~~l~~~l~~~-v~i~~~~~v~~ 214 (449)
T 3kd9_A 147 KVENVVIIGGGYIGIEMAEAFAA--QGKNVTMIVRGERVL--------RR-SFDKEVTDILEEKLKKH-VNLRLQEITMK 214 (449)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSTT--------TT-TSCHHHHHHHHHHHTTT-SEEEESCCEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHh--CCCeEEEEEcCCccc--------hh-hcCHHHHHHHHHHHHhC-cEEEeCCeEEE
Confidence 45799999999999999999999 899999999986542 21 12345666777778777 99987766532
Q ss_pred E--------eeecccccccCEEEEeeCCCC
Q psy4525 92 D--------ISLGDLTNAYHAVVLTYGADN 113 (388)
Q Consensus 92 ~--------~~~~~~~~~yd~lvlAtG~~~ 113 (388)
. +..+.....+|.||+|+|..|
T Consensus 215 i~~~~~v~~v~~~g~~i~~D~Vv~a~G~~p 244 (449)
T 3kd9_A 215 IEGEERVEKVVTDAGEYKAELVILATGIKP 244 (449)
T ss_dssp EECSSSCCEEEETTEEEECSEEEECSCEEE
T ss_pred EeccCcEEEEEeCCCEEECCEEEEeeCCcc
Confidence 1 112222347999999999766
|
| >3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea} | Back alignment and structure |
|---|
Probab=97.83 E-value=6.4e-05 Score=74.09 Aligned_cols=91 Identities=14% Similarity=0.145 Sum_probs=67.0
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
..+++|+|||+|+.|+.+|..|.+ .|.+|+++++.+.+. |. ...++...+.+.+++. ++++.++.+.
T Consensus 172 ~~~k~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~-V~i~~~~~v~ 238 (492)
T 3ic9_A 172 DLPKSVAVFGPGVIGLELGQALSR--LGVIVKVFGRSGSVA--------NL--QDEEMKRYAEKTFNEE-FYFDAKARVI 238 (492)
T ss_dssp SCCSEEEEESSCHHHHHHHHHHHH--TTCEEEEECCTTCCT--------TC--CCHHHHHHHHHHHHTT-SEEETTCEEE
T ss_pred hcCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEECCccc--------cc--CCHHHHHHHHHHHhhC-cEEEECCEEE
Confidence 346899999999999999999999 899999999987643 21 2345666666777766 9998876653
Q ss_pred EE--------eeec--cc---ccccCEEEEeeCCCCC
Q psy4525 91 QD--------ISLG--DL---TNAYHAVVLTYGADND 114 (388)
Q Consensus 91 ~~--------~~~~--~~---~~~yd~lvlAtG~~~~ 114 (388)
.. +... ++ ...+|.||+|+|..|.
T Consensus 239 ~i~~~~~~v~v~~~~~~G~~~~i~~D~Vi~a~G~~p~ 275 (492)
T 3ic9_A 239 STIEKEDAVEVIYFDKSGQKTTESFQYVLAATGRKAN 275 (492)
T ss_dssp EEEECSSSEEEEEECTTCCEEEEEESEEEECSCCEES
T ss_pred EEEEcCCEEEEEEEeCCCceEEEECCEEEEeeCCccC
Confidence 21 2221 22 2379999999998763
|
| >2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=97.82 E-value=4.4e-05 Score=74.73 Aligned_cols=91 Identities=15% Similarity=0.207 Sum_probs=67.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhh-cCCCcEEEceEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTG-DNPRVNFYGNICLG 90 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~-~~~~i~~~~~~~v~ 90 (388)
.+++++|||+|+.|+.+|..+.+ .|.+|+++++.+.+. |. ...++...+.+.+ ++.|++++.++.+.
T Consensus 173 ~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l--------~~--~d~~~~~~l~~~l~~~~gv~i~~~~~v~ 240 (468)
T 2qae_A 173 VPKTMVVIGGGVIGLELGSVWAR--LGAEVTVVEFAPRCA--------PT--LDEDVTNALVGALAKNEKMKFMTSTKVV 240 (468)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHHTCCEEECSCEEE
T ss_pred CCceEEEECCCHHHHHHHHHHHH--hCCEEEEEecCCccc--------cc--CCHHHHHHHHHHHhhcCCcEEEeCCEEE
Confidence 45899999999999999999999 899999999986642 31 2345666777777 78899999876653
Q ss_pred EE--------eeec--cc---ccccCEEEEeeCCCCC
Q psy4525 91 QD--------ISLG--DL---TNAYHAVVLTYGADND 114 (388)
Q Consensus 91 ~~--------~~~~--~~---~~~yd~lvlAtG~~~~ 114 (388)
.. +... ++ ...+|.||+|+|..|.
T Consensus 241 ~i~~~~~~~~v~~~~~~g~~~~i~~D~vv~a~G~~p~ 277 (468)
T 2qae_A 241 GGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPF 277 (468)
T ss_dssp EEEECSSSEEEEEECC---EEEEEESEEEECSCEEEC
T ss_pred EEEEcCCeEEEEEEcCCCceEEEECCEEEECCCcccC
Confidence 21 2222 22 2379999999997763
|
| >3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ... | Back alignment and structure |
|---|
Probab=97.82 E-value=5.1e-05 Score=74.49 Aligned_cols=91 Identities=12% Similarity=0.047 Sum_probs=67.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..|++ .|.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 186 ~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~~l--------~~--~d~~~~~~~~~~l~~~gv~i~~~~~v~~ 253 (478)
T 3dk9_A 186 LPGRSVIVGAGYIAVEMAGILSA--LGSKTSLMIRHDKVL--------RS--FDSMISTNCTEELENAGVEVLKFSQVKE 253 (478)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSC--------TT--SCHHHHHHHHHHHHHTTCEEETTEEEEE
T ss_pred cCccEEEECCCHHHHHHHHHHHH--cCCeEEEEEeCCccc--------cc--cCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 35899999999999999999999 899999999886542 21 2345666677778888999998876532
Q ss_pred E----------eeecc--------cccccCEEEEeeCCCCC
Q psy4525 92 D----------ISLGD--------LTNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~----------~~~~~--------~~~~yd~lvlAtG~~~~ 114 (388)
. +...+ ....+|.||+|+|..|.
T Consensus 254 i~~~~~~~~~~v~~~~~~~g~~~g~~~~~D~vi~a~G~~p~ 294 (478)
T 3dk9_A 254 VKKTLSGLEVSMVTAVPGRLPVMTMIPDVDCLLWAIGRVPN 294 (478)
T ss_dssp EEECSSSEEEEEEECCTTSCCEEEEEEEESEEEECSCEEES
T ss_pred EEEcCCCcEEEEEEccCCCCcccceEEEcCEEEEeeccccC
Confidence 1 22222 12379999999997663
|
| >3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.82 E-value=7.2e-06 Score=79.98 Aligned_cols=40 Identities=28% Similarity=0.335 Sum_probs=36.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCC------CcEEEEcCCCCCCCce
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQ------STVDIYEKLPVPFGLV 54 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g------~~v~lie~~~~~gg~~ 54 (388)
+++|+|||||++||+||..|++ .| .+|+|+|+.+.+||..
T Consensus 5 ~~dVvIIGaGiaGLsaA~~L~~--~G~~~~~~~~V~vlEa~~~~GG~~ 50 (470)
T 3i6d_A 5 KKHVVIIGGGITGLAAAFYMEK--EIKEKNLPLELTLVEASPRVGGKI 50 (470)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH--HHTTTTCSEEEEEECSSSSSCTTC
T ss_pred CCcEEEECCCHHHHHHHHHHHH--hccccCCCCCEEEEECCCCCCceE
Confidence 4799999999999999999999 67 9999999999998865
|
| >3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=4.9e-05 Score=72.95 Aligned_cols=115 Identities=15% Similarity=0.083 Sum_probs=65.1
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecc
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRN 232 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~ 232 (388)
++|+|||||.+|+.+|..|.+ ....+ .+|+++.+++.+..... .+.. .
T Consensus 2 ~~VvIIGgG~aGl~aA~~L~~-----------------~~~~g-~~V~vie~~~~~~~~~~---------~~~~---~-- 49 (409)
T 3h8l_A 2 TKVLVLGGRFGALTAAYTLKR-----------------LVGSK-ADVKVINKSRFSYFRPA---------LPHV---A-- 49 (409)
T ss_dssp CEEEEECSSHHHHHHHHHHHH-----------------HHGGG-SEEEEEESSSEEEECCS---------SCCC---C--
T ss_pred CeEEEECCCHHHHHHHHHHHh-----------------hCCCC-CeEEEEeCCCCceeccc---------hhhc---c--
Confidence 579999999999999998861 00022 47999999875422100 0000 0
Q ss_pred cccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEe
Q psy4525 233 EQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIP 312 (388)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~ 312 (388)
............+.+. ..+.+++++.+ .++.+..+. . .+.+.++ .+...++.
T Consensus 50 -------~~~~~~~~~~~~~~~~------------~~~~gv~~~~~-~v~~i~~~~--~--~V~~~~g----~~~~~~~~ 101 (409)
T 3h8l_A 50 -------IGVRDVDELKVDLSEA------------LPEKGIQFQEG-TVEKIDAKS--S--MVYYTKP----DGSMAEEE 101 (409)
T ss_dssp -------SSCCCCCCEEEEHHHH------------TGGGTCEEEEC-EEEEEETTT--T--EEEEECT----TSCEEEEE
T ss_pred -------cCCcCHHHHHHHHHHH------------HhhCCeEEEEe-eEEEEeCCC--C--EEEEccC----Ccccceee
Confidence 0000000111111112 12468888877 788887532 2 2333322 22345799
Q ss_pred cceEEEccccCCccC
Q psy4525 313 SGIAFRSIGYQSRCV 327 (388)
Q Consensus 313 ~D~Vi~a~G~~p~~~ 327 (388)
+|.||+|+|.+|+..
T Consensus 102 ~d~lViAtG~~~~~~ 116 (409)
T 3h8l_A 102 YDYVIVGIGAHLATE 116 (409)
T ss_dssp CSEEEECCCCEECGG
T ss_pred CCEEEECCCCCcCcc
Confidence 999999999988753
|
| >1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=5.5e-05 Score=75.18 Aligned_cols=89 Identities=7% Similarity=-0.069 Sum_probs=68.3
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEEE-
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQD- 92 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~- 92 (388)
++++|||+|+.|+.+|..+.+ .|.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+...
T Consensus 215 ~~vvViGgG~~g~E~A~~l~~--~G~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~GV~i~~~~~V~~i~ 282 (523)
T 1mo9_A 215 STVVVVGGSKTAVEYGCFFNA--TGRRTVMLVRTEPLK--------LI--KDNETRAYVLDRMKEQGMEIISGSNVTRIE 282 (523)
T ss_dssp SEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCTTT--------TC--CSHHHHHHHHHHHHHTTCEEESSCEEEEEE
T ss_pred CeEEEECCCHHHHHHHHHHHH--cCCeEEEEEecCccc--------cc--ccHHHHHHHHHHHHhCCcEEEECCEEEEEE
Confidence 899999999999999999999 899999999986542 22 23456677777788889999988665321
Q ss_pred -----------eeeccc--ccccCEEEEeeCCCCC
Q psy4525 93 -----------ISLGDL--TNAYHAVVLTYGADND 114 (388)
Q Consensus 93 -----------~~~~~~--~~~yd~lvlAtG~~~~ 114 (388)
+...++ ...+|.||+|+|..|.
T Consensus 283 ~~~~~~v~~~~v~~~~G~~~i~aD~Vv~A~G~~p~ 317 (523)
T 1mo9_A 283 EDANGRVQAVVAMTPNGEMRIETDFVFLGLGEQPR 317 (523)
T ss_dssp ECTTSBEEEEEEEETTEEEEEECSCEEECCCCEEC
T ss_pred EcCCCceEEEEEEECCCcEEEEcCEEEECcCCccC
Confidence 223333 3479999999998764
|
| >2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G* | Back alignment and structure |
|---|
Probab=97.79 E-value=1.5e-05 Score=78.47 Aligned_cols=39 Identities=15% Similarity=0.139 Sum_probs=37.2
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
++|+|||||++|++||..|++ .|++|+|+|+.+.+||.+
T Consensus 40 ~~v~iiGaG~aGl~aA~~l~~--~g~~v~v~E~~~~~GGr~ 78 (495)
T 2vvm_A 40 WDVIVIGGGYCGLTATRDLTV--AGFKTLLLEARDRIGGRS 78 (495)
T ss_dssp EEEEEECCBHHHHHHHHHHHH--TTCCEEEECSSSBSBTTC
T ss_pred CCEEEECCcHHHHHHHHHHHH--CCCCEEEEeCCCCCCCcc
Confidence 799999999999999999999 899999999999999876
|
| >3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=4.7e-05 Score=76.34 Aligned_cols=91 Identities=11% Similarity=0.134 Sum_probs=67.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++|+|||+|+.|+.+|..|++ .|.+|+++++.+.+. | ....++...+.+.+++.|++++.++.+..
T Consensus 150 ~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l--------~--~~~~~~~~~l~~~l~~~GV~i~~~~~v~~ 217 (565)
T 3ntd_A 150 NVEHATVVGGGFIGLEMMESLHH--LGIKTTLLELADQVM--------T--PVDREMAGFAHQAIRDQGVDLRLGTALSE 217 (565)
T ss_dssp TCSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSSC--------T--TSCHHHHHHHHHHHHHTTCEEEETCCEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--cCCcEEEEEcCCccc--------h--hcCHHHHHHHHHHHHHCCCEEEeCCeEEE
Confidence 35799999999999999999999 899999999986542 3 22345666677777888999987765422
Q ss_pred E---------------------------eeeccc-ccccCEEEEeeCCCCC
Q psy4525 92 D---------------------------ISLGDL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~---------------------------~~~~~~-~~~yd~lvlAtG~~~~ 114 (388)
. +...+. ...+|.||+|+|..+.
T Consensus 218 i~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~i~~D~vi~a~G~~p~ 268 (565)
T 3ntd_A 218 VSYQVQTHVASDAAGEDTAHQHIKGHLSLTLSNGELLETDLLIMAIGVRPE 268 (565)
T ss_dssp EEEECCCCCCCGGGTCCCTTCCTTCEEEEEETTSCEEEESEEEECSCEEEC
T ss_pred EeccccccccccccccccccccCCCcEEEEEcCCCEEEcCEEEECcCCccc
Confidence 1 122222 2379999999997663
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=97.78 E-value=1.9e-05 Score=75.38 Aligned_cols=35 Identities=31% Similarity=0.418 Sum_probs=32.2
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
.+|+||||||+|+++|..|++ .|++|+|||+.+.+
T Consensus 2 m~V~IVGaGpaGl~~A~~L~~--~G~~v~v~Er~~~~ 36 (412)
T 4hb9_A 2 MHVGIIGAGIGGTCLAHGLRK--HGIKVTIYERNSAA 36 (412)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCSS
T ss_pred CEEEEECcCHHHHHHHHHHHh--CCCCEEEEecCCCC
Confidence 489999999999999999999 89999999987654
|
| >3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=5.9e-05 Score=73.92 Aligned_cols=91 Identities=12% Similarity=0.182 Sum_probs=68.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..+.+ .|.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 179 ~~~~v~ViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l--------~~--~~~~~~~~l~~~l~~~Gv~v~~~~~v~~ 246 (476)
T 3lad_A 179 VPGKLGVIGAGVIGLELGSVWAR--LGAEVTVLEAMDKFL--------PA--VDEQVAKEAQKILTKQGLKILLGARVTG 246 (476)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSSS--------TT--SCHHHHHHHHHHHHHTTEEEEETCEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEecCCCcC--------cc--cCHHHHHHHHHHHHhCCCEEEECCEEEE
Confidence 46899999999999999999999 899999999986542 21 2345666777778888999998866532
Q ss_pred E--------eeecc----cccccCEEEEeeCCCCC
Q psy4525 92 D--------ISLGD----LTNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~--------~~~~~----~~~~yd~lvlAtG~~~~ 114 (388)
. +...+ ....+|.||+|+|..|.
T Consensus 247 i~~~~~~~~v~~~~~~g~~~~~~D~vi~a~G~~p~ 281 (476)
T 3lad_A 247 TEVKNKQVTVKFVDAEGEKSQAFDKLIVAVGRRPV 281 (476)
T ss_dssp EEECSSCEEEEEESSSEEEEEEESEEEECSCEEEC
T ss_pred EEEcCCEEEEEEEeCCCcEEEECCEEEEeeCCccc
Confidence 1 22221 12378999999997663
|
| >1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 | Back alignment and structure |
|---|
Probab=97.78 E-value=2.6e-05 Score=76.37 Aligned_cols=91 Identities=12% Similarity=0.119 Sum_probs=68.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..|++ .|.+|+++++.+.+. |. ...++.+.+.+.+++.|++++.++.+..
T Consensus 176 ~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~l--------~~--~~~~~~~~l~~~l~~~gv~i~~~~~v~~ 243 (470)
T 1dxl_A 176 IPKKLVVIGAGYIGLEMGSVWGR--IGSEVTVVEFASEIV--------PT--MDAEIRKQFQRSLEKQGMKFKLKTKVVG 243 (470)
T ss_dssp CCSEEEESCCSHHHHHHHHHHHH--HTCEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHSSCCEECSEEEEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHH--cCCcEEEEEcCCccc--------cc--ccHHHHHHHHHHHHHcCCEEEeCCEEEE
Confidence 45899999999999999999999 799999999986642 31 2345666677778888999998876632
Q ss_pred E--------eeec---cc---ccccCEEEEeeCCCCC
Q psy4525 92 D--------ISLG---DL---TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~--------~~~~---~~---~~~yd~lvlAtG~~~~ 114 (388)
. +... +. ...+|.||+|+|..|.
T Consensus 244 i~~~~~~~~v~~~~~~~g~~~~~~~D~vv~a~G~~p~ 280 (470)
T 1dxl_A 244 VDTSGDGVKLTVEPSAGGEQTIIEADVVLVSAGRTPF 280 (470)
T ss_dssp EECSSSSEEEEEEESSSCCCEEEEESEEECCCCEEEC
T ss_pred EEEcCCeEEEEEEecCCCcceEEECCEEEECCCCCcC
Confidence 1 2221 22 2379999999997763
|
| >3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris} | Back alignment and structure |
|---|
Probab=97.77 E-value=4.9e-05 Score=74.49 Aligned_cols=92 Identities=16% Similarity=0.096 Sum_probs=68.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCC-CCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLP-QSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~-g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
.+++++|||+|+.|+.+|..+.+ . +.+|+++++.+.+. |. ....++...+.+.+++.|++++.++.+.
T Consensus 158 ~~~~vvViGgG~~g~e~A~~l~~--~~g~~Vtlv~~~~~~l--------~~-~~~~~~~~~l~~~l~~~GV~i~~~~~v~ 226 (472)
T 3iwa_A 158 EVSKAVIVGGGFIGLEMAVSLAD--MWGIDTTVVELADQIM--------PG-FTSKSLSQMLRHDLEKNDVVVHTGEKVV 226 (472)
T ss_dssp SCSEEEEECCSHHHHHHHHHHHH--HHCCEEEEECSSSSSS--------TT-TSCHHHHHHHHHHHHHTTCEEECSCCEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--hcCCcEEEEEccCccc--------cc-ccCHHHHHHHHHHHHhcCCEEEeCCEEE
Confidence 36899999999999999999999 7 99999999886542 21 1234566677777888899999876553
Q ss_pred EE--------eeeccc-ccccCEEEEeeCCCCC
Q psy4525 91 QD--------ISLGDL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 91 ~~--------~~~~~~-~~~yd~lvlAtG~~~~ 114 (388)
.. +...+. ...+|.||+|+|..+.
T Consensus 227 ~i~~~~~~v~v~~~~g~~i~aD~Vv~a~G~~p~ 259 (472)
T 3iwa_A 227 RLEGENGKVARVITDKRTLDADLVILAAGVSPN 259 (472)
T ss_dssp EEEESSSBEEEEEESSCEEECSEEEECSCEEEC
T ss_pred EEEccCCeEEEEEeCCCEEEcCEEEECCCCCcC
Confidence 21 222233 3479999999997763
|
| >2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=2.2e-05 Score=74.90 Aligned_cols=40 Identities=23% Similarity=0.251 Sum_probs=37.5
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
.++|+|||||++|+++|..|.+ .|.+|+|+|+.+.+||.+
T Consensus 3 ~~~v~iiG~G~~Gl~~A~~l~~--~g~~v~v~E~~~~~GG~~ 42 (384)
T 2bi7_A 3 SKKILIVGAGFSGAVIGRQLAE--KGHQVHIIDQRDHIGGNS 42 (384)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSSSGGG
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCcEEEEEecCCcCCcc
Confidence 3699999999999999999999 899999999999999887
|
| >4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=2.6e-05 Score=76.79 Aligned_cols=43 Identities=33% Similarity=0.566 Sum_probs=38.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCC-CcEEEEcCCCCCCCceee
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQ-STVDIYEKLPVPFGLVRY 56 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g-~~v~lie~~~~~gg~~~~ 56 (388)
..++|+|||||++|+++|..|.+ .| .+|+|+|+.+.+||.+..
T Consensus 8 ~~~~v~iiG~G~~Gl~~A~~l~~--~g~~~v~v~E~~~~~GG~~~~ 51 (484)
T 4dsg_A 8 LTPKIVIIGAGPTGLGAAVRLTE--LGYKNWHLYECNDTPGGLSRS 51 (484)
T ss_dssp CSCCEEEECCSHHHHHHHHHHHH--TTCCSEEEEESSSSSSGGGCE
T ss_pred cCCCEEEECcCHHHHHHHHHHHH--cCCCCEEEEeCCCCCCCeeee
Confidence 45799999999999999999999 77 799999999999998743
|
| >1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6 | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00011 Score=66.79 Aligned_cols=56 Identities=9% Similarity=0.091 Sum_probs=38.7
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCcc-c-----cCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQA-L-----VTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~-~-----~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
..|+++++++.++++..+ ++++.++.+..... . ..++..++++|.||.|+|..++.
T Consensus 132 ~~gv~i~~~~~V~~i~~~-~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG~~s~~ 193 (284)
T 1rp0_A 132 RPNVKLFNAVAAEDLIVK-GNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGPF 193 (284)
T ss_dssp STTEEEEETEEEEEEEEE-TTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSSTT
T ss_pred cCCCEEEcCcEEEEEEec-CCeEEEEEEeccccccccCccccCceEEEECCEEEECCCCchHH
Confidence 368999999999999764 35676766531000 0 01233689999999999988764
|
| >3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=6e-05 Score=72.95 Aligned_cols=108 Identities=12% Similarity=0.049 Sum_probs=63.3
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecc
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRN 232 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~ 232 (388)
|+|+|||||..|+.+|..|.+ .....+||+|.+++.+... +.+.++..-. +.+
T Consensus 3 K~VvIIGgG~aGl~aA~~L~~-------------------~~~~~~VtlI~~~~~~~~~---p~l~~v~~g~-----~~~ 55 (430)
T 3hyw_A 3 KHVVVIGGGVGGIATAYNLRN-------------------LMPDLKITLISDRPYFGFT---PAFPHLAMGW-----RKF 55 (430)
T ss_dssp CEEEEECSSHHHHHHHHHHHH-------------------HCTTCEEEEECSSSEEECG---GGHHHHHHTC-----SCG
T ss_pred CcEEEECCCHHHHHHHHHHhc-------------------cCcCCeEEEEcCCCCCccC---ccHHHHhcCC-----CCH
Confidence 789999999999999997751 0112479999998765332 2222222100 000
Q ss_pred cccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEe
Q psy4525 233 EQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIP 312 (388)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~ 312 (388)
++ +....+ +...+.||+++.. .++.|..+. + .+ .+.++++++
T Consensus 56 ~~----------i~~~~~---------------~~~~~~gv~~i~~-~v~~Id~~~--~--~V--------~~~~g~~i~ 97 (430)
T 3hyw_A 56 ED----------ISVPLA---------------PLLPKFNIEFINE-KAESIDPDA--N--TV--------TTQSGKKIE 97 (430)
T ss_dssp GG----------SEEEST---------------TTGGGGTEEEECS-CEEEEETTT--T--EE--------EETTCCEEE
T ss_pred HH----------hhhcHH---------------HHHHHCCcEEEEe-EEEEEECCC--C--EE--------EECCCCEEE
Confidence 00 000000 0122468888655 577776432 2 12 345667899
Q ss_pred cceEEEccccCCc
Q psy4525 313 SGIAFRSIGYQSR 325 (388)
Q Consensus 313 ~D~Vi~a~G~~p~ 325 (388)
+|.+|+|||.++.
T Consensus 98 YD~LViAtG~~~~ 110 (430)
T 3hyw_A 98 YDYLVIATGPKLV 110 (430)
T ss_dssp CSEEEECCCCEEE
T ss_pred CCEEEEeCCCCcc
Confidence 9999999998753
|
| >2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.74 E-value=8.3e-05 Score=69.02 Aligned_cols=89 Identities=16% Similarity=0.145 Sum_probs=65.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++|+|||+|+.|+.+|..|.+ .+.+|+++++.+.+. + ..+....+.+.+++.+++++.++.+..
T Consensus 151 ~~~~v~viG~G~~g~e~a~~l~~--~g~~V~~v~~~~~~~--------~----~~~~~~~l~~~l~~~gv~v~~~~~v~~ 216 (335)
T 2zbw_A 151 QGKRVLIVGGGDSAVDWALNLLD--TARRITLIHRRPQFR--------A----HEASVKELMKAHEEGRLEVLTPYELRR 216 (335)
T ss_dssp TTCEEEEECSSHHHHHHHHHTTT--TSSEEEEECSSSSCC--------S----CHHHHHHHHHHHHTTSSEEETTEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--hCCEEEEEEcCCccC--------c----cHHHHHHHHhccccCCeEEecCCccee
Confidence 35799999999999999999998 799999999886532 1 123455666777788999998866532
Q ss_pred --------Eeeec---cc---ccccCEEEEeeCCCCC
Q psy4525 92 --------DISLG---DL---TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 --------~~~~~---~~---~~~yd~lvlAtG~~~~ 114 (388)
.+... +. ...+|.||+|+|..+.
T Consensus 217 i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 253 (335)
T 2zbw_A 217 VEGDERVRWAVVFHNQTQEELALEVDAVLILAGYITK 253 (335)
T ss_dssp EEESSSEEEEEEEETTTCCEEEEECSEEEECCCEEEE
T ss_pred EccCCCeeEEEEEECCCCceEEEecCEEEEeecCCCC
Confidence 13332 22 2379999999997663
|
| >1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7 | Back alignment and structure |
|---|
Probab=97.74 E-value=2e-05 Score=74.65 Aligned_cols=39 Identities=33% Similarity=0.313 Sum_probs=36.7
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
++|+|||||++|+++|..|.+ .|.+|+|+|+.+.+||.+
T Consensus 2 ~~v~iiG~G~~Gl~~A~~l~~--~g~~v~v~E~~~~~GG~~ 40 (367)
T 1i8t_A 2 YDYIIVGSGLFGAVCANELKK--LNKKVLVIEKRNHIGGNA 40 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHGG--GTCCEEEECSSSSSSGGG
T ss_pred CCEEEECcCHHHHHHHHHHHh--CCCcEEEEecCCCCCcce
Confidence 589999999999999999999 799999999999999876
|
| >3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=97.73 E-value=2.1e-05 Score=76.97 Aligned_cols=40 Identities=23% Similarity=0.204 Sum_probs=36.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCC--CcEEEEcCCCCCCCce
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQ--STVDIYEKLPVPFGLV 54 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g--~~v~lie~~~~~gg~~ 54 (388)
.++|+|||||++|+++|..|.+ .| .+|+|+|+.+.+||.+
T Consensus 4 ~~~v~IiGaG~~Gl~~A~~L~~--~g~~~~v~v~E~~~~~GG~~ 45 (475)
T 3lov_A 4 SKRLVIVGGGITGLAAAYYAER--AFPDLNITLLEAGERLGGKV 45 (475)
T ss_dssp SCEEEEECCBHHHHHHHHHHHH--HCTTSEEEEECSSSSSBTTC
T ss_pred cccEEEECCCHHHHHHHHHHHH--hCCCCCEEEEECCCCCCcee
Confidence 4799999999999999999999 67 9999999999998865
|
| >4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.72 E-value=6.5e-05 Score=73.39 Aligned_cols=91 Identities=9% Similarity=0.027 Sum_probs=68.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..+.+ .+.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 169 ~~~~v~ViGgG~~g~e~A~~l~~--~g~~Vt~v~~~~~~l--------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~v~~ 236 (463)
T 4dna_A 169 LPESILIAGGGYIAVEFANIFHG--LGVKTTLIYRGKEIL--------SR--FDQDMRRGLHAAMEEKGIRILCEDIIQS 236 (463)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHTTCEEECSCCEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--cCCeEEEEEcCCccc--------cc--cCHHHHHHHHHHHHHCCCEEECCCEEEE
Confidence 46899999999999999999999 899999999886542 21 2345667777778888999998765532
Q ss_pred ---------Eee-ecccccccCEEEEeeCCCCC
Q psy4525 92 ---------DIS-LGDLTNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ---------~~~-~~~~~~~yd~lvlAtG~~~~ 114 (388)
.+. ..+++..+|.||+|+|..|.
T Consensus 237 i~~~~~~~~~v~~~~~g~i~aD~Vv~a~G~~p~ 269 (463)
T 4dna_A 237 VSADADGRRVATTMKHGEIVADQVMLALGRMPN 269 (463)
T ss_dssp EEECTTSCEEEEESSSCEEEESEEEECSCEEES
T ss_pred EEEcCCCEEEEEEcCCCeEEeCEEEEeeCcccC
Confidence 123 33333578999999997663
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=2.9e-05 Score=74.56 Aligned_cols=36 Identities=22% Similarity=0.355 Sum_probs=33.3
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCc-EEEEcCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQST-VDIYEKLPVP 50 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~-v~lie~~~~~ 50 (388)
.++|+||||||+|+++|..|++ .|.+ |+|||+.+.+
T Consensus 4 ~~dVvIVGaG~aGl~~A~~L~~--~G~~~v~v~E~~~~~ 40 (410)
T 3c96_A 4 PIDILIAGAGIGGLSCALALHQ--AGIGKVTLLESSSEI 40 (410)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCSEEEEEESSSSC
T ss_pred CCeEEEECCCHHHHHHHHHHHh--CCCCeEEEEECCCCc
Confidence 4799999999999999999999 8999 9999998664
|
| >3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.72 E-value=9.5e-05 Score=69.54 Aligned_cols=98 Identities=16% Similarity=0.177 Sum_probs=63.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCC-cEEEceEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPR-VNFYGNICLG 90 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~-i~~~~~~~v~ 90 (388)
..++|+|||+|++|+.+|..|.+ .+.+|+++++.+.+... ...|.........+.+.+.+++.+ ++++.++.+.
T Consensus 165 ~~~~vvVvG~G~~g~e~a~~l~~--~g~~V~lv~~~~~~~~~---~~d~~~~~~~~~~~~l~~~l~~~g~v~~~~~~~v~ 239 (369)
T 3d1c_A 165 NKGQYVVIGGNESGFDAAYQLAK--NGSDIALYTSTTGLNDP---DADPSVRLSPYTRQRLGNVIKQGARIEMNVHYTVK 239 (369)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHH--TTCEEEEECC-------------CTTSCCHHHHHHHHHHHHTTCCEEEECSCCEE
T ss_pred CCCEEEEECCCcCHHHHHHHHHh--cCCeEEEEecCCCCCCC---CCCCCccCCHHHHHHHHHHHhhCCcEEEecCcEEE
Confidence 35699999999999999999999 89999999988653210 011222233455666777777786 9998775542
Q ss_pred E--------Eeeeccccc--ccCEEEEeeCCCCC
Q psy4525 91 Q--------DISLGDLTN--AYHAVVLTYGADND 114 (388)
Q Consensus 91 ~--------~~~~~~~~~--~yd~lvlAtG~~~~ 114 (388)
. .+...+++. .+|.+|+|||..+.
T Consensus 240 ~i~~~~~~~~v~~~~g~~~~~~d~vi~a~G~~~~ 273 (369)
T 3d1c_A 240 DIDFNNGQYHISFDSGQSVHTPHEPILATGFDAT 273 (369)
T ss_dssp EEEEETTEEEEEESSSCCEEESSCCEECCCBCGG
T ss_pred EEEecCCceEEEecCCeEeccCCceEEeeccCCc
Confidence 2 123333332 36999999997763
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=3.4e-05 Score=74.67 Aligned_cols=39 Identities=26% Similarity=0.409 Sum_probs=34.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCCCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKLPVPFG 52 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~~~~gg 52 (388)
..+||+|||||++|+++|..|++ .|. +|+|+|+.+..++
T Consensus 5 ~~~dVvIIGgG~aGlsaA~~La~--~G~~~V~vlE~~~~~~~ 44 (438)
T 3dje_A 5 KSSSLLIVGAGTWGTSTALHLAR--RGYTNVTVLDPYPVPSA 44 (438)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHH--TTCCCEEEEESSCSSCT
T ss_pred CCCCEEEECCCHHHHHHHHHHHH--cCCCcEEEEeCCCCCCC
Confidence 45799999999999999999999 899 9999999876543
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=2.4e-05 Score=77.15 Aligned_cols=41 Identities=32% Similarity=0.354 Sum_probs=38.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
.+++|+|||||++|+++|..|++ .|.+|+|+|+.+.+||.+
T Consensus 32 ~~~~v~IiGaG~~Gl~aA~~l~~--~g~~v~vlE~~~~~gg~~ 72 (498)
T 2iid_A 32 NPKHVVIVGAGMAGLSAAYVLAG--AGHQVTVLEASERPGGRV 72 (498)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHH--HTCEEEEECSSSSSBTTC
T ss_pred CCCCEEEECCCHHHHHHHHHHHh--CCCeEEEEECCCCCCCce
Confidence 46899999999999999999999 799999999999999876
|
| >3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=97.70 E-value=6.7e-05 Score=73.78 Aligned_cols=92 Identities=14% Similarity=0.125 Sum_probs=68.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
..+++++|||+|+.|+.+|..+++ .|.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+.
T Consensus 189 ~~~~~v~ViGgG~~g~e~A~~l~~--~g~~Vtli~~~~~~l--------~~--~~~~~~~~l~~~l~~~Gv~i~~~~~V~ 256 (484)
T 3o0h_A 189 KLPKSIVIVGGGYIGVEFANIFHG--LGVKTTLLHRGDLIL--------RN--FDYDLRQLLNDAMVAKGISIIYEATVS 256 (484)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHHTCEEESSCCEE
T ss_pred hcCCcEEEECcCHHHHHHHHHHHH--cCCeEEEEECCCccc--------cc--cCHHHHHHHHHHHHHCCCEEEeCCEEE
Confidence 346899999999999999999999 899999999886542 22 234466667777777899999876653
Q ss_pred E--------Eeeeccc-ccccCEEEEeeCCCCC
Q psy4525 91 Q--------DISLGDL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 91 ~--------~~~~~~~-~~~yd~lvlAtG~~~~ 114 (388)
. .+...+. ...+|.||+|+|..+.
T Consensus 257 ~i~~~~~~v~v~~~~g~~i~aD~Vi~A~G~~p~ 289 (484)
T 3o0h_A 257 QVQSTENCYNVVLTNGQTICADRVMLATGRVPN 289 (484)
T ss_dssp EEEECSSSEEEEETTSCEEEESEEEECCCEEEC
T ss_pred EEEeeCCEEEEEECCCcEEEcCEEEEeeCCCcC
Confidence 2 1333333 3479999999997663
|
| >3vrd_B FCCB subunit, flavocytochrome C flavin subunit; sulfide oxidation, heme C binding, FAD binding, electron TRA oxidoreductase complex; HET: HEC FAD; 1.50A {Thermochromatium tepidum} PDB: 1fcd_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=7e-05 Score=71.56 Aligned_cols=110 Identities=10% Similarity=0.039 Sum_probs=63.8
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEec
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFR 231 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~ 231 (388)
+|||+|||+|..|+.+|..|.+ ....-+|++|.+++..........+. .....
T Consensus 2 GKkVvIIG~G~AG~~aA~~L~~-------------------~~~~~~Vtlie~~~~~~~~p~~~~v~--~g~~~------ 54 (401)
T 3vrd_B 2 GRKVVVVGGGTGGATAAKYIKL-------------------ADPSIEVTLIEPNETYYTCYMSNEVI--GGDRE------ 54 (401)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH-------------------HCTTSEEEEECSCSSEECSTTHHHHH--HTSSC------
T ss_pred cCEEEEECCcHHHHHHHHHHHh-------------------cCcCCeEEEEeCCCCCCCccCHHHHh--cCCCC------
Confidence 7999999999999999997751 11223799999887643332222210 00000
Q ss_pred ccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEE
Q psy4525 232 NEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELI 311 (388)
Q Consensus 232 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l 311 (388)
+..+.+..+. +. +.|++++.. .++.+..+ .+. +.+.++.++
T Consensus 55 ----------~~~~~~~~~~----~~------------~~gv~~i~~-~v~~id~~--~~~----------v~~~~g~~i 95 (401)
T 3vrd_B 55 ----------LASLRVGYDG----LR------------AHGIQVVHD-SALGIDPD--KKL----------VKTAGGAEF 95 (401)
T ss_dssp ----------GGGGEECSHH----HH------------HTTCEEECS-CEEEEETT--TTE----------EEETTSCEE
T ss_pred ----------HHHHhhCHHH----HH------------HCCCEEEEe-EEEEEEcc--CcE----------EEeccccee
Confidence 0000011111 11 356777543 56666542 221 224566789
Q ss_pred ecceEEEccccCCccC
Q psy4525 312 PSGIAFRSIGYQSRCV 327 (388)
Q Consensus 312 ~~D~Vi~a~G~~p~~~ 327 (388)
.+|.+|+|||.+++..
T Consensus 96 ~yd~LviAtG~~~~~~ 111 (401)
T 3vrd_B 96 AYDRCVVAPGIDLLYD 111 (401)
T ss_dssp ECSEEEECCCEEECGG
T ss_pred ecceeeeccCCccccC
Confidence 9999999999987653
|
| >1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00011 Score=72.29 Aligned_cols=93 Identities=16% Similarity=0.043 Sum_probs=66.3
Q ss_pred CCcEEEECccHHHHHHHHHHHhhC--CCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLL--PQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~--~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
.++|+|||+|+.|+.+|..|.+.. .+.+|+++++.+.+.+ .....++...+.+.+++.|++++.++.+.
T Consensus 180 ~~~vvViGgG~iG~E~A~~l~~~~~~~g~~V~~v~~~~~~~~---------~~l~~~~~~~~~~~l~~~GV~v~~~~~V~ 250 (493)
T 1m6i_A 180 VKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNMG---------KILPEYLSNWTMEKVRREGVKVMPNAIVQ 250 (493)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTTT---------TTSCHHHHHHHHHHHHTTTCEEECSCCEE
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhhhcCCEEEEEecCccccc---------ccCCHHHHHHHHHHHHhcCCEEEeCCEEE
Confidence 579999999999999999987621 3689999998754211 11224566677778888999999886543
Q ss_pred E--------Eeeecccc-cccCEEEEeeCCCCC
Q psy4525 91 Q--------DISLGDLT-NAYHAVVLTYGADND 114 (388)
Q Consensus 91 ~--------~~~~~~~~-~~yd~lvlAtG~~~~ 114 (388)
. .+.+.+++ ..+|.||+|+|..+.
T Consensus 251 ~i~~~~~~~~v~l~dG~~i~aD~Vv~a~G~~pn 283 (493)
T 1m6i_A 251 SVGVSSGKLLIKLKDGRKVETDHIVAAVGLEPN 283 (493)
T ss_dssp EEEEETTEEEEEETTSCEEEESEEEECCCEEEC
T ss_pred EEEecCCeEEEEECCCCEEECCEEEECCCCCcc
Confidence 2 13333333 379999999998764
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.65 E-value=3.1e-05 Score=75.00 Aligned_cols=35 Identities=26% Similarity=0.430 Sum_probs=31.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
.+++|+||||||+|+++|..|++ .|++|+|||+.+
T Consensus 21 m~~~ViIVGaGpaGl~~A~~La~--~G~~V~viE~~~ 55 (430)
T 3ihm_A 21 MKKRIGIVGAGTAGLHLGLFLRQ--HDVDVTVYTDRK 55 (430)
T ss_dssp --CEEEEECCHHHHHHHHHHHHH--TTCEEEEEESCC
T ss_pred CCCCEEEECCcHHHHHHHHHHHH--CCCeEEEEcCCC
Confidence 34799999999999999999999 899999999875
|
| >3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0001 Score=73.42 Aligned_cols=47 Identities=21% Similarity=0.288 Sum_probs=38.0
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
+.|+++++++.++++..+ ++.+..+.+ .+++++.||.||+|+|..+.
T Consensus 232 ~~Gv~I~~~t~V~~I~~~-~~~v~gV~l--------~~G~~i~Ad~VVlA~G~~s~ 278 (549)
T 3nlc_A 232 ELGGEIRFSTRVDDLHME-DGQITGVTL--------SNGEEIKSRHVVLAVGHSAR 278 (549)
T ss_dssp HTTCEEESSCCEEEEEES-SSBEEEEEE--------TTSCEEECSCEEECCCTTCH
T ss_pred hcCCEEEeCCEEEEEEEe-CCEEEEEEE--------CCCCEEECCEEEECCCCChh
Confidence 468999999999999875 456766765 34457999999999999885
|
| >1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A | Back alignment and structure |
|---|
Probab=97.64 E-value=4.9e-05 Score=73.65 Aligned_cols=41 Identities=15% Similarity=0.079 Sum_probs=38.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
..++|+|||+|++|+++|..|++ .|.+|+++|+++.+||.+
T Consensus 5 ~~~~v~iiG~G~~gl~~a~~l~~--~g~~v~~~e~~~~~gg~~ 45 (433)
T 1d5t_A 5 EEYDVIVLGTGLTECILSGIMSV--NGKKVLHMDRNPYYGGES 45 (433)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTTS
T ss_pred CcCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCccccc
Confidence 45799999999999999999999 899999999999999876
|
| >2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=3.9e-05 Score=73.20 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=33.0
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
.+||+|||||++|+++|..|++ .|.+|+|+|+.+..
T Consensus 4 ~~DVvIIGaG~~Gl~~A~~La~--~G~~V~vlE~~~~~ 39 (397)
T 2oln_A 4 SYDVVVVGGGPVGLATAWQVAE--RGHRVLVLERHTFF 39 (397)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCTT
T ss_pred cCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCCC
Confidence 3699999999999999999999 89999999998654
|
| >3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00016 Score=71.69 Aligned_cols=90 Identities=13% Similarity=0.180 Sum_probs=64.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..|++ .|.+|+++++. .+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 209 ~~~~vvVIGgG~ig~E~A~~l~~--~G~~Vtlv~~~-~~l--------~~--~d~~~~~~~~~~l~~~GV~v~~~~~v~~ 275 (519)
T 3qfa_A 209 CPGKTLVVGASYVALECAGFLAG--IGLDVTVMVRS-ILL--------RG--FDQDMANKIGEHMEEHGIKFIRQFVPIK 275 (519)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-CSS--------TT--SCHHHHHHHHHHHHHTTCEEEESEEEEE
T ss_pred cCCeEEEECCcHHHHHHHHHHHH--cCCeEEEEecc-ccc--------cc--CCHHHHHHHHHHHHHCCCEEEeCCeEEE
Confidence 45789999999999999999999 89999999975 221 22 2345666777778888999988754321
Q ss_pred E------------eee--ccc----ccccCEEEEeeCCCCC
Q psy4525 92 D------------ISL--GDL----TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~------------~~~--~~~----~~~yd~lvlAtG~~~~ 114 (388)
. ++. .+. ...+|.||+|+|..|.
T Consensus 276 v~~~~~~~~~~~~v~~~~~~g~~~~~~~~D~vi~a~G~~p~ 316 (519)
T 3qfa_A 276 VEQIEAGTPGRLRVVAQSTNSEEIIEGEYNTVMLAIGRDAC 316 (519)
T ss_dssp EEEEECCTTCEEEEEEEESSSSCEEEEEESEEEECSCEEES
T ss_pred EEEccCCCCceEEEEEEECCCcEEEEEECCEEEEecCCccc
Confidence 1 111 122 1258999999997663
|
| >3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=0.00026 Score=65.31 Aligned_cols=118 Identities=14% Similarity=0.095 Sum_probs=69.5
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecc
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRN 232 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~ 232 (388)
.+|+|||+|..|+.+|..|+ +.+ .+|+++.+.+.+--. +.. ..|..... .
T Consensus 8 ~~vvIIG~G~aGl~aA~~l~--------------------~~g-~~v~lie~~~~~gG~-----~~~--~~~~~~~~-~- 57 (332)
T 3lzw_A 8 YDITIIGGGPVGLFTAFYGG--------------------MRQ-ASVKIIESLPQLGGQ-----LSA--LYPEKYIY-D- 57 (332)
T ss_dssp EEEEEECCSHHHHHHHHHHH--------------------HTT-CCEEEECSSSSSCHH-----HHH--HCTTSEEC-C-
T ss_pred ceEEEECCCHHHHHHHHHHH--------------------HCC-CCEEEEEcCCCCCce-----ehh--cCCCceEe-c-
Confidence 58999999999999999776 234 369999987642100 000 01111000 0
Q ss_pred cccccchhhhccccc-hhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEE
Q psy4525 233 EQLCGVHEASATLAR-PRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELI 311 (388)
Q Consensus 233 ~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l 311 (388)
.+ ..+. ....+...+...+. +.++.++++..++.+..++++. ..+. +.+++ +
T Consensus 58 --------~~-~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~v~~i~~~~~~~-~~v~--------~~~g~-~ 110 (332)
T 3lzw_A 58 --------VA-GFPKIRAQELINNLKEQMA--------KFDQTICLEQAVESVEKQADGV-FKLV--------TNEET-H 110 (332)
T ss_dssp --------ST-TCSSEEHHHHHHHHHHHHT--------TSCCEEECSCCEEEEEECTTSC-EEEE--------ESSEE-E
T ss_pred --------cC-CCCCCCHHHHHHHHHHHHH--------HhCCcEEccCEEEEEEECCCCc-EEEE--------ECCCE-E
Confidence 00 0010 12334444444332 4579999999999998754322 2232 33444 9
Q ss_pred ecceEEEcccc---CCccC
Q psy4525 312 PSGIAFRSIGY---QSRCV 327 (388)
Q Consensus 312 ~~D~Vi~a~G~---~p~~~ 327 (388)
.+|.||+|||. .|..+
T Consensus 111 ~~d~vVlAtG~~~~~p~~~ 129 (332)
T 3lzw_A 111 YSKTVIITAGNGAFKPRKL 129 (332)
T ss_dssp EEEEEEECCTTSCCEECCC
T ss_pred EeCEEEECCCCCcCCCCCC
Confidence 99999999999 66543
|
| >3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00015 Score=71.27 Aligned_cols=89 Identities=12% Similarity=0.161 Sum_probs=65.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..+++ .|.+|+++++.... |. ...++...+.+.+++.|++++.++.+..
T Consensus 186 ~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~~~l---------~~--~d~~~~~~l~~~l~~~Gv~i~~~~~v~~ 252 (483)
T 3dgh_A 186 EPGKTLVVGAGYIGLECAGFLKG--LGYEPTVMVRSIVL---------RG--FDQQMAELVAASMEERGIPFLRKTVPLS 252 (483)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSCSS---------TT--SCHHHHHHHHHHHHHTTCCEEETEEEEE
T ss_pred cCCcEEEECCCHHHHHHHHHHHH--cCCEEEEEeCCCCC---------cc--cCHHHHHHHHHHHHhCCCEEEeCCEEEE
Confidence 45799999999999999999999 89999999975211 22 2345666777778888999998866532
Q ss_pred E---------eeeccc------ccccCEEEEeeCCCC
Q psy4525 92 D---------ISLGDL------TNAYHAVVLTYGADN 113 (388)
Q Consensus 92 ~---------~~~~~~------~~~yd~lvlAtG~~~ 113 (388)
. +...+. ...+|.||+|+|..|
T Consensus 253 i~~~~~~~~~v~~~~~~~~~~~~~~~D~vi~a~G~~p 289 (483)
T 3dgh_A 253 VEKQDDGKLLVKYKNVETGEESEDVYDTVLWAIGRKG 289 (483)
T ss_dssp EEECTTSCEEEEEEETTTCCEEEEEESEEEECSCEEE
T ss_pred EEEcCCCcEEEEEecCCCCceeEEEcCEEEECccccc
Confidence 1 222221 237899999999766
|
| >2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A | Back alignment and structure |
|---|
Probab=97.58 E-value=6.1e-05 Score=77.06 Aligned_cols=42 Identities=29% Similarity=0.293 Sum_probs=38.8
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
...++|+|||+|++|+++|..|.+ .|++|+|+|+.+.+||.+
T Consensus 105 ~~~~~v~viG~G~~gl~~a~~l~~--~g~~v~~~e~~~~~gg~~ 146 (662)
T 2z3y_A 105 KKTGKVIIIGSGVSGLAAARQLQS--FGMDVTLLEARDRVGGRV 146 (662)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHH--TTCEEEEECSSSSSBTTC
T ss_pred cCCCeEEEECcCHHHHHHHHHHHH--CCCeEEEEecCCCCCCcc
Confidence 346899999999999999999999 899999999999999875
|
| >3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0002 Score=70.40 Aligned_cols=89 Identities=10% Similarity=0.078 Sum_probs=65.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..+++ .|.+|+++++...+ |. ...++...+.+.+++.|++++.++.+..
T Consensus 184 ~~~~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~l---------~~--~d~~~~~~l~~~l~~~gv~~~~~~~v~~ 250 (488)
T 3dgz_A 184 SPGKTLVVGASYVALECAGFLTG--IGLDTTVMMRSIPL---------RG--FDQQMSSLVTEHMESHGTQFLKGCVPSH 250 (488)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCSS---------TT--SCHHHHHHHHHHHHHTTCEEEETEEEEE
T ss_pred cCCeEEEECCCHHHHHHHHHHHH--cCCceEEEEcCccc---------cc--CCHHHHHHHHHHHHHCCCEEEeCCEEEE
Confidence 45789999999999999999999 89999999986321 22 2345667777778888999998765532
Q ss_pred E---------eeecc---cc---cccCEEEEeeCCCC
Q psy4525 92 D---------ISLGD---LT---NAYHAVVLTYGADN 113 (388)
Q Consensus 92 ~---------~~~~~---~~---~~yd~lvlAtG~~~ 113 (388)
. +...+ .+ ..+|.||+|+|..|
T Consensus 251 i~~~~~~~~~v~~~~~~~g~~~~~~~D~vi~a~G~~p 287 (488)
T 3dgz_A 251 IKKLPTNQLQVTWEDHASGKEDTGTFDTVLWAIGRVP 287 (488)
T ss_dssp EEECTTSCEEEEEEETTTTEEEEEEESEEEECSCEEE
T ss_pred EEEcCCCcEEEEEEeCCCCeeEEEECCEEEEcccCCc
Confidence 1 22221 22 36899999999766
|
| >3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00016 Score=67.84 Aligned_cols=89 Identities=15% Similarity=0.190 Sum_probs=62.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++|+|||+|+.|+.+|..|.+ .+.+|+++++.+.+. +. ..+...+.+..++.+++++.++.+..
T Consensus 162 ~~~~vvVvG~G~~g~e~A~~l~~--~g~~V~lv~~~~~~~--------~~----~~~~~~l~~~~~~~gv~i~~~~~v~~ 227 (360)
T 3ab1_A 162 KGKRVVIVGGGDSALDWTVGLIK--NAASVTLVHRGHEFQ--------GH----GKTAHEVERARANGTIDVYLETEVAS 227 (360)
T ss_dssp TTCEEEEECSSHHHHHHHHHTTT--TSSEEEEECSSSSCS--------SC----SHHHHSSHHHHHHTSEEEESSEEEEE
T ss_pred CCCcEEEECCCHHHHHHHHHHHh--cCCEEEEEEcCCCCC--------CC----HHHHHHHHHHhhcCceEEEcCcCHHH
Confidence 35799999999999999999999 799999999886542 11 12334444455567899888765521
Q ss_pred ---------Eeeec--cc---ccccCEEEEeeCCCCC
Q psy4525 92 ---------DISLG--DL---TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ---------~~~~~--~~---~~~yd~lvlAtG~~~~ 114 (388)
.+.+. +. ...+|.||+|+|..+.
T Consensus 228 i~~~~~~v~~v~~~~~~g~~~~i~~D~vi~a~G~~p~ 264 (360)
T 3ab1_A 228 IEESNGVLTRVHLRSSDGSKWTVEADRLLILIGFKSN 264 (360)
T ss_dssp EEEETTEEEEEEEEETTCCEEEEECSEEEECCCBCCS
T ss_pred hccCCCceEEEEEEecCCCeEEEeCCEEEECCCCCCC
Confidence 12332 22 2379999999997763
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=5.8e-05 Score=74.76 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=36.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
.+||||||+|+||+++|..|++ .|.+|+|+|+.+.+||..
T Consensus 41 ~~DVvVVGaG~AGl~AA~~aa~--~G~~V~vlEk~~~~GG~s 80 (510)
T 4at0_A 41 EADVVVAGYGIAGVAASIEAAR--AGADVLVLERTSGWGGAT 80 (510)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTTG
T ss_pred cCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeCCCCCCCcc
Confidence 4689999999999999999999 899999999998877643
|
| >1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=8.2e-05 Score=70.05 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=32.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
..+||+|||||++|+++|..|++ .|.+|+|+|+...
T Consensus 5 ~~~dVvVIG~Gi~Gls~A~~La~--~G~~V~vle~~~~ 40 (363)
T 1c0p_A 5 SQKRVVVLGSGVIGLSSALILAR--KGYSVHILARDLP 40 (363)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSCT
T ss_pred CCCCEEEECCCHHHHHHHHHHHh--CCCEEEEEeccCC
Confidence 34799999999999999999999 8999999998753
|
| >3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.0002 Score=69.77 Aligned_cols=39 Identities=13% Similarity=0.191 Sum_probs=33.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
..++|+|||+|..|+.+|..|.+..++.+|+++++.+.+
T Consensus 226 ~~~~vvVvGgG~sg~e~a~~l~~~~~~~~Vt~v~r~~~~ 264 (463)
T 3s5w_A 226 KPMKIAIIGGGQSAAEAFIDLNDSYPSVQADMILRASAL 264 (463)
T ss_dssp -CEEEEEECCSHHHHHHHHHHHHHCTTEEEEEECSSSSC
T ss_pred CCCeEEEECCCHhHHHHHHHHHhcCCCCeEEEEEeCCCC
Confidence 468999999999999999999995448999999998654
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=7.7e-05 Score=76.50 Aligned_cols=37 Identities=24% Similarity=0.326 Sum_probs=33.6
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
.+||+|||||++|+++|..|++ .|.+|+|+|+.+.+|
T Consensus 272 ~~DVvIIGgGiaGlsaA~~La~--~G~~V~vlEk~~~~g 308 (676)
T 3ps9_A 272 KREAAIIGGGIASALLSLALLR--RGWQVTLYCADEAPA 308 (676)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSSS
T ss_pred CCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeCCCccc
Confidence 4799999999999999999999 899999999976554
|
| >3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00031 Score=63.63 Aligned_cols=113 Identities=12% Similarity=0.012 Sum_probs=64.0
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecc
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRN 232 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~ 232 (388)
.+|+|||+|.+|+.+|..|+ +.+ .+|+++.+....... +...
T Consensus 3 ~~vvIIG~G~aGl~aA~~l~--------------------~~g-~~v~lie~~~~~~~~------------~~~~----- 44 (297)
T 3fbs_A 3 FDVIIIGGSYAGLSAALQLG--------------------RAR-KNILLVDAGERRNRF------------ASHS----- 44 (297)
T ss_dssp EEEEEECCSHHHHHHHHHHH--------------------HTT-CCEEEEECCCCGGGG------------CSCC-----
T ss_pred CCEEEECCCHHHHHHHHHHH--------------------hCC-CCEEEEeCCCccccc------------chhh-----
Confidence 47999999999999999876 344 369999986432110 0000
Q ss_pred cccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEe
Q psy4525 233 EQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIP 312 (388)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~ 312 (388)
...+..-......+...+...+. ...++.++. ..++.+..++++ ..+. +.+++++.
T Consensus 45 ------~~~~~~~~~~~~~~~~~~~~~~~-------~~~~v~~~~-~~v~~i~~~~~~--~~v~--------~~~g~~~~ 100 (297)
T 3fbs_A 45 ------HGFLGQDGKAPGEIIAEARRQIE-------RYPTIHWVE-GRVTDAKGSFGE--FIVE--------IDGGRRET 100 (297)
T ss_dssp ------CSSTTCTTCCHHHHHHHHHHHHT-------TCTTEEEEE-SCEEEEEEETTE--EEEE--------ETTSCEEE
T ss_pred ------cCCcCCCCCCHHHHHHHHHHHHH-------hcCCeEEEE-eEEEEEEEcCCe--EEEE--------ECCCCEEE
Confidence 00000000111233333333332 123677754 477777654322 2232 34456899
Q ss_pred cceEEEccccCCccC
Q psy4525 313 SGIAFRSIGYQSRCV 327 (388)
Q Consensus 313 ~D~Vi~a~G~~p~~~ 327 (388)
+|.||+|||.+|...
T Consensus 101 ~d~vviAtG~~~~~~ 115 (297)
T 3fbs_A 101 AGRLILAMGVTDELP 115 (297)
T ss_dssp EEEEEECCCCEEECC
T ss_pred cCEEEECCCCCCCCC
Confidence 999999999987653
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=7.8e-05 Score=70.67 Aligned_cols=37 Identities=22% Similarity=0.357 Sum_probs=33.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
.+||+|||||++|+++|..|++ .|.+|+|+|+.+..+
T Consensus 3 ~~dvvIIGaG~~Gl~~A~~La~--~G~~V~vie~~~~~~ 39 (389)
T 2gf3_A 3 HFDVIVVGAGSMGMAAGYQLAK--QGVKTLLVDAFDPPH 39 (389)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSCSSC
T ss_pred cCCEEEECCCHHHHHHHHHHHh--CCCeEEEEeCCCCCC
Confidence 4699999999999999999999 899999999986544
|
| >2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A | Back alignment and structure |
|---|
Probab=97.53 E-value=7.8e-05 Score=77.95 Aligned_cols=42 Identities=29% Similarity=0.293 Sum_probs=38.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
...++|+|||+|++||++|..|.+ .|++|+|||+.+.+||.+
T Consensus 276 ~~~~~v~viG~G~aGl~~A~~l~~--~g~~v~v~E~~~~~GG~~ 317 (852)
T 2xag_A 276 KKTGKVIIIGSGVSGLAAARQLQS--FGMDVTLLEARDRVGGRV 317 (852)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSCTTC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHH--CCCcEEEEEecCcCCCce
Confidence 346899999999999999999999 899999999999999875
|
| >1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=7.5e-05 Score=73.08 Aligned_cols=42 Identities=24% Similarity=0.328 Sum_probs=37.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCCCCCCCcee
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKLPVPFGLVR 55 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~~~~gg~~~ 55 (388)
..++|+|||||++|+++|..|.+ .|. +|+|+|+.+.+||.+.
T Consensus 3 ~~~~~~iiG~G~~g~~~a~~l~~--~g~~~v~~~e~~~~~gg~~~ 45 (472)
T 1b37_A 3 VGPRVIVVGAGMSGISAAKRLSE--AGITDLLILEATDHIGGRMH 45 (472)
T ss_dssp --CCEEEECCBHHHHHHHHHHHH--TTCCCEEEECSSSSSBTTSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHh--cCCCceEEEeCCCCCCCcee
Confidence 35799999999999999999999 898 8999999999998763
|
| >3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00022 Score=65.41 Aligned_cols=111 Identities=13% Similarity=0.101 Sum_probs=64.5
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeec--CcccccCCHHHHHHHhcCCCceEEe
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRR--GALQVAFTIKEFREMTKLPHVQTVF 230 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~--~~~~~~~~~~el~~l~~~~~~~~~~ 230 (388)
.+|+|||+|..|+.+|..|+ +.+. +|+++.+. +.+...-. +...|..
T Consensus 16 ~~vvIIG~G~aGl~aA~~l~--------------------~~g~-~v~lie~~~gg~~~~~~~------~~~~~~~---- 64 (323)
T 3f8d_A 16 FDVIIVGLGPAAYGAALYSA--------------------RYML-KTLVIGETPGGQLTEAGI------VDDYLGL---- 64 (323)
T ss_dssp EEEEEECCSHHHHHHHHHHH--------------------HTTC-CEEEEESSTTGGGGGCCE------ECCSTTS----
T ss_pred cCEEEECccHHHHHHHHHHH--------------------HCCC-cEEEEeccCCCeeccccc------ccccCCC----
Confidence 58999999999999999876 2443 59999986 22211000 0000000
Q ss_pred cccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeE
Q psy4525 231 RNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTEL 310 (388)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~ 310 (388)
. ......+...+..... +.++++++ ..++++..++ +. ..+. +.++.+
T Consensus 65 -----------~---~~~~~~~~~~~~~~~~--------~~~v~~~~-~~v~~i~~~~-~~-~~v~--------~~~g~~ 111 (323)
T 3f8d_A 65 -----------I---EIQASDMIKVFNKHIE--------KYEVPVLL-DIVEKIENRG-DE-FVVK--------TKRKGE 111 (323)
T ss_dssp -----------T---TEEHHHHHHHHHHHHH--------TTTCCEEE-SCEEEEEEC---C-EEEE--------ESSSCE
T ss_pred -----------C---CCCHHHHHHHHHHHHH--------HcCCEEEE-EEEEEEEecC-CE-EEEE--------ECCCCE
Confidence 0 0011223333332221 45778888 7888887643 22 2222 344568
Q ss_pred EecceEEEccccCCccC
Q psy4525 311 IPSGIAFRSIGYQSRCV 327 (388)
Q Consensus 311 l~~D~Vi~a~G~~p~~~ 327 (388)
+.+|.||+|+|..|..+
T Consensus 112 ~~~d~lvlAtG~~~~~~ 128 (323)
T 3f8d_A 112 FKADSVILGIGVKRRKL 128 (323)
T ss_dssp EEEEEEEECCCCEECCC
T ss_pred EEcCEEEECcCCCCccC
Confidence 99999999999987654
|
| >3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone oxidoreductase, Cys356Ala variant, integral membrane protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A* 3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A* 3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=7.3e-05 Score=72.47 Aligned_cols=111 Identities=15% Similarity=0.061 Sum_probs=63.8
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecc
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRN 232 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~ 232 (388)
++|+|||||..|+.+|..|.+ .+ ..+ .+|+++.+.+...... .+..+....
T Consensus 5 ~~vvIIGgG~aGl~aA~~L~~----------------~~-~~g-~~Vtlie~~~~~~~~~---~~~~~~~g~-------- 55 (437)
T 3sx6_A 5 AHVVILGAGTGGMPAAYEMKE----------------AL-GSG-HEVTLISANDYFQFVP---SNPWVGVGW-------- 55 (437)
T ss_dssp CEEEEECCSTTHHHHHHHHHH----------------HH-GGG-SEEEEECSSSEEECGG---GHHHHHHTS--------
T ss_pred CcEEEECCcHHHHHHHHHHhc----------------cC-CCc-CEEEEEeCCCCCcccC---CccccccCc--------
Confidence 689999999999999998861 00 022 4799999987543221 111111000
Q ss_pred cccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEe
Q psy4525 233 EQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIP 312 (388)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~ 312 (388)
.........+.+.+. ..|++++. ..++.+..+. + .+. +.+++++.
T Consensus 56 ----------~~~~~~~~~l~~~~~------------~~gv~~~~-~~v~~id~~~--~--~V~--------~~~g~~i~ 100 (437)
T 3sx6_A 56 ----------KERDDIAFPIRHYVE------------RKGIHFIA-QSAEQIDAEA--Q--NIT--------LADGNTVH 100 (437)
T ss_dssp ----------SCHHHHEEECHHHHH------------TTTCEEEC-SCEEEEETTT--T--EEE--------ETTSCEEE
T ss_pred ----------cCHHHHHHHHHHHHH------------HCCCEEEE-eEEEEEEcCC--C--EEE--------ECCCCEEE
Confidence 000000011112221 45788864 5777776432 2 232 34456799
Q ss_pred cceEEEccccCCccC
Q psy4525 313 SGIAFRSIGYQSRCV 327 (388)
Q Consensus 313 ~D~Vi~a~G~~p~~~ 327 (388)
+|.||+|||.+|+..
T Consensus 101 ~d~lviAtG~~~~~~ 115 (437)
T 3sx6_A 101 YDYLMIATGPKLAFE 115 (437)
T ss_dssp CSEEEECCCCEECGG
T ss_pred CCEEEECCCCCcCcc
Confidence 999999999998753
|
| >3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00025 Score=70.13 Aligned_cols=52 Identities=10% Similarity=0.089 Sum_probs=38.8
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.|+++++++.++++..+ ++.+.++.+... .++..++.||.||.|+|.....
T Consensus 123 ~~Gv~i~~~~~V~~v~~~-~~~v~gv~~~~~----dG~~~~i~ad~VI~AdG~~S~v 174 (512)
T 3e1t_A 123 RKGVDVRERHEVIDVLFE-GERAVGVRYRNT----EGVELMAHARFIVDASGNRTRV 174 (512)
T ss_dssp HTTCEEESSCEEEEEEEE-TTEEEEEEEECS----SSCEEEEEEEEEEECCCTTCSS
T ss_pred hCCCEEEcCCEEEEEEEE-CCEEEEEEEEeC----CCCEEEEEcCEEEECCCcchHH
Confidence 468999999999999874 467766765321 2333589999999999997643
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.0001 Score=75.70 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=33.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
.+||+|||||++|+++|..|++ .|.+|+|+|+.+.+|
T Consensus 264 ~~DVvIIGgGiaGlsaA~~La~--~G~~V~vlEk~~~~g 300 (689)
T 3pvc_A 264 CDDIAIIGGGIVSALTALALQR--RGAVVTLYCADAQPA 300 (689)
T ss_dssp CSSEEEECCSHHHHHHHHHHHT--TTCCEEEEESSSSTT
T ss_pred CCCEEEECCcHHHHHHHHHHHH--CCCcEEEEeCCCccc
Confidence 4799999999999999999999 899999999976554
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.49 E-value=6.8e-05 Score=70.71 Aligned_cols=35 Identities=20% Similarity=0.236 Sum_probs=32.5
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
+||+|||||++|+++|..|++ .|.+|+|+|+.+..
T Consensus 3 ~dvvIIG~Gi~Gl~~A~~La~--~G~~V~vle~~~~~ 37 (372)
T 2uzz_A 3 YDLIIIGSGSVGAAAGYYATR--AGLNVLMTDAHMPP 37 (372)
T ss_dssp EEEEESCTTHHHHHHHHHHHH--TTCCEEEECSSCSS
T ss_pred CCEEEECCCHHHHHHHHHHHH--CCCeEEEEecCCCC
Confidence 689999999999999999999 89999999998654
|
| >4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00023 Score=70.28 Aligned_cols=90 Identities=17% Similarity=0.271 Sum_probs=65.9
Q ss_pred CcEEEECccHHHHHHHHHHHhhC------------CCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCc
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLL------------PQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRV 81 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~------------~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i 81 (388)
.+++||||||.|+.+|..|.+.. ...+|+++|..+.+. |. ..+++.+...+.+++.||
T Consensus 218 ~~vvVvGgG~tGvE~A~~l~~~~~~~l~~~~~~~~~~~~V~lve~~~~il--------~~--~~~~~~~~~~~~L~~~GV 287 (502)
T 4g6h_A 218 LSIVVVGGGPTGVEAAGELQDYVHQDLRKFLPALAEEVQIHLVEALPIVL--------NM--FEKKLSSYAQSHLENTSI 287 (502)
T ss_dssp TEEEEECCSHHHHHHHHHHHHHHHHTHHHHCHHHHHHCEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHTTC
T ss_pred cceEEECCCcchhhhHHHHHHHHHHHHHhhcccccccceeEEeccccccc--------cC--CCHHHHHHHHHHHHhcce
Confidence 47999999999999999887521 246899999987652 33 245677778888889999
Q ss_pred EEEceEEEEEE----e----eeccc-----ccccCEEEEeeCCCC
Q psy4525 82 NFYGNICLGQD----I----SLGDL-----TNAYHAVVLTYGADN 113 (388)
Q Consensus 82 ~~~~~~~v~~~----~----~~~~~-----~~~yd~lvlAtG~~~ 113 (388)
++++++.+... + ...++ ...+|.||+|+|..+
T Consensus 288 ~v~~~~~v~~v~~~~~~~~~~~~dg~~~~~~i~ad~viwa~Gv~~ 332 (502)
T 4g6h_A 288 KVHLRTAVAKVEEKQLLAKTKHEDGKITEETIPYGTLIWATGNKA 332 (502)
T ss_dssp EEETTEEEEEECSSEEEEEEECTTSCEEEEEEECSEEEECCCEEC
T ss_pred eeecCceEEEEeCCceEEEEEecCcccceeeeccCEEEEccCCcC
Confidence 99999887431 1 11121 136999999999765
|
| >4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00014 Score=67.78 Aligned_cols=44 Identities=2% Similarity=-0.120 Sum_probs=31.2
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
+.++++++++.++++..++ +.+..+. +.++ ++.+|.||+|+|..
T Consensus 88 ~~~~~~~~~~~v~~i~~~~-~~~~~v~--------~~~g-~~~~d~vV~AtG~~ 131 (357)
T 4a9w_A 88 KYALPVLRPIRVQRVSHFG-ERLRVVA--------RDGR-QWLARAVISATGTW 131 (357)
T ss_dssp HTTCCEECSCCEEEEEEET-TEEEEEE--------TTSC-EEEEEEEEECCCSG
T ss_pred HcCCEEEcCCEEEEEEECC-CcEEEEE--------eCCC-EEEeCEEEECCCCC
Confidence 4578899999999987643 3322132 3444 79999999999964
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=8.8e-05 Score=69.98 Aligned_cols=37 Identities=19% Similarity=0.292 Sum_probs=33.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
..++|+|||||++|+++|..|++ |.+|+|+|+.+.+|
T Consensus 8 ~~~dv~IIGaGi~Gls~A~~La~---G~~V~vlE~~~~~g 44 (381)
T 3nyc_A 8 IEADYLVIGAGIAGASTGYWLSA---HGRVVVLEREAQPG 44 (381)
T ss_dssp EECSEEEECCSHHHHHHHHHHTT---TSCEEEECSSSSTT
T ss_pred CcCCEEEECCcHHHHHHHHHHhC---CCCEEEEECCCCcc
Confidence 35899999999999999999994 89999999987664
|
| >3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00038 Score=66.95 Aligned_cols=45 Identities=11% Similarity=-0.018 Sum_probs=33.4
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
+.|+++++++.++++..+++ . ..++ +.++ ++.||.||+|+|..+.
T Consensus 144 ~~Gv~i~~~~~V~~i~~~~~-~-~~V~--------~~~g-~i~ad~VIlAtG~~S~ 188 (417)
T 3v76_A 144 EAGVQLRLETSIGEVERTAS-G-FRVT--------TSAG-TVDAASLVVASGGKSI 188 (417)
T ss_dssp HHTCEEECSCCEEEEEEETT-E-EEEE--------ETTE-EEEESEEEECCCCSSC
T ss_pred HCCCEEEECCEEEEEEEeCC-E-EEEE--------ECCc-EEEeeEEEECCCCccC
Confidence 56899999999999976432 2 2232 3344 7999999999998863
|
| >3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00024 Score=65.72 Aligned_cols=86 Identities=12% Similarity=0.099 Sum_probs=60.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++++|||+|+.|+.+|..|.+ .+.+|+++++.+.+. + ...+.. ...+..|++++.++.+..
T Consensus 172 ~~~~v~vvG~G~~g~e~a~~l~~--~g~~v~~v~~~~~~~--------~----~~~~~~---~l~~~~gv~i~~~~~v~~ 234 (338)
T 3itj_A 172 RNKPLAVIGGGDSACEEAQFLTK--YGSKVFMLVRKDHLR--------A----STIMQK---RAEKNEKIEILYNTVALE 234 (338)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTT--TSSEEEEECSSSSCC--------S----CHHHHH---HHHHCTTEEEECSEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--cCCEEEEEEcCCccC--------C----CHHHHH---HHHhcCCeEEeecceeEE
Confidence 45799999999999999999999 899999999886542 1 112222 222345899998876532
Q ss_pred E---------eeecc------cccccCEEEEeeCCCCC
Q psy4525 92 D---------ISLGD------LTNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~---------~~~~~------~~~~yd~lvlAtG~~~~ 114 (388)
. +...+ ....+|.||+|+|..+.
T Consensus 235 i~~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 272 (338)
T 3itj_A 235 AKGDGKLLNALRIKNTKKNEETDLPVSGLFYAIGHTPA 272 (338)
T ss_dssp EEESSSSEEEEEEEETTTTEEEEEECSEEEECSCEEEC
T ss_pred EEcccCcEEEEEEEECCCCceEEEEeCEEEEEeCCCCC
Confidence 1 33322 12379999999997663
|
| >3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00011 Score=71.77 Aligned_cols=42 Identities=14% Similarity=0.119 Sum_probs=38.6
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
...+||+|||+|.+|+++|..|++ .|.+|+++|+++.+||.+
T Consensus 18 ~~~~dv~iiG~G~~g~~~a~~l~~--~g~~v~~~e~~~~~Gg~~ 59 (475)
T 3p1w_A 18 GEHYDVIILGTGLKECILSGLLSH--YGKKILVLDRNPYYGGET 59 (475)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCGGG
T ss_pred cccCCEEEECCCHHHHHHHHHHHH--CCCcEEEEeccCCCCCCc
Confidence 345799999999999999999999 899999999999999875
|
| >3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00052 Score=65.75 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=34.7
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQS 324 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p 324 (388)
+.|+++++++.++++..++++.+..+... .++..++.||.||.|+|..+
T Consensus 118 ~~gv~i~~~~~v~~i~~~~~~~~v~v~~~------~g~~~~~~a~~vV~A~G~~s 166 (421)
T 3nix_A 118 RQGVDVEYEVGVTDIKFFGTDSVTTIEDI------NGNKREIEARFIIDASGYGR 166 (421)
T ss_dssp HHTCEEECSEEEEEEEEETTEEEEEEEET------TSCEEEEEEEEEEECCGGGC
T ss_pred hCCCEEEcCCEEEEEEEeCCEEEEEEEcC------CCCEEEEEcCEEEECCCCch
Confidence 46899999999999986544433333321 23333799999999999875
|
| >1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00052 Score=63.48 Aligned_cols=86 Identities=14% Similarity=0.150 Sum_probs=60.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++|+|||+|+.|+.+|..|.+ .+.+|+++++.+.+. + ...+. .+.+++.+++++.++.+..
T Consensus 158 ~~~~v~VvG~G~~g~e~A~~l~~--~g~~V~lv~~~~~~~--------~----~~~~~---~~~~~~~gv~i~~~~~v~~ 220 (333)
T 1vdc_A 158 RNKPLAVIGGGDSAMEEANFLTK--YGSKVYIIHRRDAFR--------A----SKIMQ---QRALSNPKIDVIWNSSVVE 220 (333)
T ss_dssp TTSEEEEECCSHHHHHHHHHHTT--TSSEEEEECSSSSCC--------S----CHHHH---HHHHTCTTEEEECSEEEEE
T ss_pred CCCeEEEECCChHHHHHHHHHHh--cCCeEEEEecCCcCC--------c----cHHHH---HHHHhCCCeeEecCCceEE
Confidence 45799999999999999999998 799999999886531 1 11111 2345678999988766532
Q ss_pred E-----------eeec---cc---ccccCEEEEeeCCCCC
Q psy4525 92 D-----------ISLG---DL---TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~-----------~~~~---~~---~~~yd~lvlAtG~~~~ 114 (388)
. +... +. ...+|.||+|+|..+.
T Consensus 221 i~~~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 260 (333)
T 1vdc_A 221 AYGDGERDVLGGLKVKNVVTGDVSDLKVSGLFFAIGHEPA 260 (333)
T ss_dssp EEESSSSSSEEEEEEEETTTCCEEEEECSEEEECSCEEES
T ss_pred EeCCCCccceeeEEEEecCCCceEEEecCEEEEEeCCccc
Confidence 1 2222 11 2379999999997763
|
| >2x8g_A Thioredoxin glutathione reductase; redox-active center, detoxification pathway, oxidoreductase, flavoprotein; HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A* 2x8h_A* 2x99_A* 3h4k_A* 2v6o_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00047 Score=69.56 Aligned_cols=90 Identities=11% Similarity=0.164 Sum_probs=62.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||||+.|+.+|..|++ .|.+|+++++. .+. |. ...++...+.+.+++.|++++.++.+..
T Consensus 285 ~~~~vvViGgG~~g~E~A~~l~~--~g~~Vtlv~~~-~~l--------~~--~d~~~~~~~~~~l~~~gv~i~~~~~v~~ 351 (598)
T 2x8g_A 285 FPGKTLVIGASYVALECAGFLAS--LGGDVTVMVRS-ILL--------RG--FDQQMAEKVGDYMENHGVKFAKLCVPDE 351 (598)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-CSS--------TT--SCHHHHHHHHHHHHHTTCEEEETEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--cCCEEEEEECC-cCc--------Cc--CCHHHHHHHHHHHHhCCCEEEECCeEEE
Confidence 45789999999999999999999 89999999986 221 22 1234555666677778999987753311
Q ss_pred E-----------------ee--ecccc-c--ccCEEEEeeCCCCC
Q psy4525 92 D-----------------IS--LGDLT-N--AYHAVVLTYGADND 114 (388)
Q Consensus 92 ~-----------------~~--~~~~~-~--~yd~lvlAtG~~~~ 114 (388)
. +. ..+.+ . .+|.||+|+|..|.
T Consensus 352 v~~~~~~~~~~~~~~~~~v~~~~~~g~~~~~~~D~vi~a~G~~p~ 396 (598)
T 2x8g_A 352 IKQLKVVDTENNKPGLLLVKGHYTDGKKFEEEFETVIFAVGREPQ 396 (598)
T ss_dssp EEEEECCBTTTTBCCEEEEEEEETTSCEEEEEESEEEECSCEEEC
T ss_pred EEeccccccccCCCceEEEEEEeCCCcEEeccCCEEEEEeCCccc
Confidence 0 11 11222 2 38999999997663
|
| >2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0012 Score=62.97 Aligned_cols=133 Identities=9% Similarity=0.007 Sum_probs=73.1
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCccccc------CCHHHHHHHhcCC-
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVA------FTIKEFREMTKLP- 224 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~------~~~~el~~l~~~~- 224 (388)
..+|+|||||.+|+-+|..|+ +.| .+|+++.|.+..... +.+.-++.+..+-
T Consensus 5 ~~~V~IVGaG~aGl~~A~~L~--------------------~~G-~~v~v~E~~~~~~~~~~~g~~l~~~~~~~l~~~g~ 63 (397)
T 2vou_A 5 TDRIAVVGGSISGLTAALMLR--------------------DAG-VDVDVYERSPQPLSGFGTGIVVQPELVHYLLEQGV 63 (397)
T ss_dssp CSEEEEECCSHHHHHHHHHHH--------------------HTT-CEEEEECSSSSSCCCCSCEEECCHHHHHHHHHTTC
T ss_pred CCcEEEECCCHHHHHHHHHHH--------------------hCC-CCEEEEecCCCCCCccccccccChhHHHHHHHcCC
Confidence 468999999999999999886 345 369999988653111 2333232222211
Q ss_pred --------CceEEeccc-ccccchhhhc-cccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeE
Q psy4525 225 --------HVQTVFRNE-QLCGVHEASA-TLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITG 294 (388)
Q Consensus 225 --------~~~~~~~~~-~~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~ 294 (388)
.....+... .-..+..... .....+..+...+.... .++++++++.++++..+++ .+ .
T Consensus 64 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~L~~~~----------~~~~i~~~~~v~~i~~~~~-~v-~ 131 (397)
T 2vou_A 64 ELDSISVPSSSMEYVDALTGERVGSVPADWRFTSYDSIYGGLYELF----------GPERYHTSKCLVGLSQDSE-TV-Q 131 (397)
T ss_dssp CGGGTCBCCCEEEEEETTTCCEEEEEECCCCEEEHHHHHHHHHHHH----------CSTTEETTCCEEEEEECSS-CE-E
T ss_pred ccccccccccceEEEecCCCCccccccCcccccCHHHHHHHHHHhC----------CCcEEEcCCEEEEEEecCC-EE-E
Confidence 001111100 0000000000 00011234445554332 3678899999999986543 33 2
Q ss_pred EEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 295 INFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 295 v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
+.+ .+++++.+|.||.|.|....
T Consensus 132 v~~--------~~g~~~~ad~vV~AdG~~S~ 154 (397)
T 2vou_A 132 MRF--------SDGTKAEANWVIGADGGASV 154 (397)
T ss_dssp EEE--------TTSCEEEESEEEECCCTTCH
T ss_pred EEE--------CCCCEEECCEEEECCCcchh
Confidence 433 33457999999999998754
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00013 Score=72.99 Aligned_cols=36 Identities=25% Similarity=0.339 Sum_probs=33.0
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
.++|+||||||+|+++|..|++ .|.+|+|||+.+.+
T Consensus 26 ~~dVlIVGaGpaGl~~A~~La~--~G~~V~vlEr~~~~ 61 (549)
T 2r0c_A 26 ETDVLILGGGPVGMALALDLAH--RQVGHLVVEQTDGT 61 (549)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSCSC
T ss_pred CCCEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCC
Confidence 3689999999999999999999 89999999998654
|
| >3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.00082 Score=66.92 Aligned_cols=45 Identities=11% Similarity=0.079 Sum_probs=31.5
Q ss_pred EEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEcccc--CCcc
Q psy4525 274 RPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGY--QSRC 326 (388)
Q Consensus 274 ~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~--~p~~ 326 (388)
.+++++.++++..++++..-.+.+ .+++++.||.||+|+|. +|..
T Consensus 105 ~i~~~~~V~~i~~~~~~~~~~V~~--------~~G~~i~ad~lV~AtG~~s~p~~ 151 (540)
T 3gwf_A 105 HFKFGTEVTSALYLDDENLWEVTT--------DHGEVYRAKYVVNAVGLLSAINF 151 (540)
T ss_dssp GEEESCCEEEEEEETTTTEEEEEE--------TTSCEEEEEEEEECCCSCCSBCC
T ss_pred eeEeccEEEEEEEeCCCCEEEEEE--------cCCCEEEeCEEEECCcccccCCC
Confidence 677888898887655433334433 44568999999999995 5543
|
| >2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00051 Score=63.75 Aligned_cols=86 Identities=13% Similarity=0.197 Sum_probs=60.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++|+|||+|+.|+.+|..|.+ .+.+|+++++.+.+. +. +.+. .+.+++.+++++.++.+..
T Consensus 154 ~~~~v~ViG~G~~g~e~a~~l~~--~g~~V~l~~~~~~~~--------~~----~~~~---~~~~~~~gV~v~~~~~v~~ 216 (335)
T 2a87_A 154 RDQDIAVIGGGDSAMEEATFLTR--FARSVTLVHRRDEFR--------AS----KIML---DRARNNDKIRFLTNHTVVA 216 (335)
T ss_dssp TTCEEEEECSSHHHHHHHHHHTT--TCSEEEEECSSSSCS--------SC----TTHH---HHHHHCTTEEEECSEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--hCCeEEEEEcCCcCC--------cc----HHHH---HHHhccCCcEEEeCceeEE
Confidence 45899999999999999999999 799999999886541 11 1122 1234567999998876532
Q ss_pred E--------eeec---cc---ccccCEEEEeeCCCCC
Q psy4525 92 D--------ISLG---DL---TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~--------~~~~---~~---~~~yd~lvlAtG~~~~ 114 (388)
. +.+. +. ...+|.||+|+|..+.
T Consensus 217 i~~~~~~~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 253 (335)
T 2a87_A 217 VDGDTTVTGLRVRDTNTGAETTLPVTGVFVAIGHEPR 253 (335)
T ss_dssp EECSSSCCEEEEEEETTSCCEEECCSCEEECSCEEEC
T ss_pred EecCCcEeEEEEEEcCCCceEEeecCEEEEccCCccC
Confidence 1 2222 12 2379999999997763
|
| >2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0012 Score=62.77 Aligned_cols=61 Identities=11% Similarity=0.202 Sum_probs=42.1
Q ss_pred hhHHHHHHHhhCCCCCCCCCCce-eEEEEecCcceeeeeCCCCcee-EEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 249 RKRLTELILKTSNPDESKSNCSK-YFRPIFLRSPTEFKLNDNGAIT-GINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~-gv~~~~~~~~~~i~~~~~~~v~-~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+..+...+...+. +. |+++++++.++++..++ +.+. .+++ .+++++.+|.||.|+|..+..
T Consensus 106 r~~l~~~L~~~~~--------~~~gv~i~~~~~v~~i~~~~-~~v~g~v~~--------~~g~~~~ad~vV~AdG~~s~v 168 (399)
T 2x3n_A 106 CESLRRLVLEKID--------GEATVEMLFETRIEAVQRDE-RHAIDQVRL--------NDGRVLRPRVVVGADGIASYV 168 (399)
T ss_dssp HHHHHHHHHHHHT--------TCTTEEEECSCCEEEEEECT-TSCEEEEEE--------TTSCEEEEEEEEECCCTTCHH
T ss_pred HHHHHHHHHHHhh--------hcCCcEEEcCCEEEEEEEcC-CceEEEEEE--------CCCCEEECCEEEECCCCChHH
Confidence 4455555655442 34 89999999999998754 3332 4443 234579999999999987653
|
| >2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00073 Score=61.79 Aligned_cols=86 Identities=12% Similarity=0.118 Sum_probs=59.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++|+|||+|+.|+.+|..|.+ .+.+|+++++.+.+. ....+.+ ...++.+++++.++.+..
T Consensus 142 ~~~~v~VvG~G~~g~e~A~~l~~--~g~~Vtlv~~~~~~~------------~~~~~~~---~l~~~~gv~v~~~~~v~~ 204 (311)
T 2q0l_A 142 KNKEVAVLGGGDTAVEEAIYLAN--ICKKVYLIHRRDGFR------------CAPITLE---HAKNNDKIEFLTPYVVEE 204 (311)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHT--TSSEEEEECSSSSCC------------SCHHHHH---HHHTCTTEEEETTEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--cCCEEEEEeeCCccC------------CCHHHHH---HHhhCCCeEEEeCCEEEE
Confidence 45899999999999999999999 799999999875531 1112222 223357899987765521
Q ss_pred ---------Eeeec---cc---ccccCEEEEeeCCCCC
Q psy4525 92 ---------DISLG---DL---TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ---------~~~~~---~~---~~~yd~lvlAtG~~~~ 114 (388)
.+... +. ...+|.||+|+|..|.
T Consensus 205 i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 242 (311)
T 2q0l_A 205 IKGDASGVSSLSIKNTATNEKRELVVPGFFIFVGYDVN 242 (311)
T ss_dssp EEEETTEEEEEEEEETTTCCEEEEECSEEEECSCEEEC
T ss_pred EECCCCcEeEEEEEecCCCceEEEecCEEEEEecCccC
Confidence 12322 22 2379999999997663
|
| >3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00082 Score=65.30 Aligned_cols=141 Identities=13% Similarity=0.158 Sum_probs=77.6
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCccccc-------CCHHHHHHHhcCCC
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVA-------FTIKEFREMTKLPH 225 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~-------~~~~el~~l~~~~~ 225 (388)
-+|+|||||.+|+-+|..|+ +.|. +|+++.+.+..... .....+.++.-...
T Consensus 7 ~dVvIVGaG~aGl~aA~~La--------------------~~G~-~V~vlE~~~~~~~g~~~~g~~l~~~~l~~lg~~~~ 65 (453)
T 3atr_A 7 YDVLIIGGGFAGSSAAYQLS--------------------RRGL-KILLVDSKPWNRIGDKPCGDAVSKAHFDKLGMPYP 65 (453)
T ss_dssp CSEEEECCSHHHHHHHHHHS--------------------SSSC-CEEEECSSCGGGTTCSCCCCEEEHHHHHHTTCCCC
T ss_pred CCEEEECcCHHHHHHHHHHH--------------------HCCC-CEEEEECCCCCCCCcccccccccHHHHHHhcCCCC
Confidence 46999999999999999887 3444 69999987643210 12233433321110
Q ss_pred ----ce-----E-EecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEE
Q psy4525 226 ----VQ-----T-VFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGI 295 (388)
Q Consensus 226 ----~~-----~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v 295 (388)
.. . .+.+.....+........-.+..+...+...+. +.|+++++++.++++..+ ++.+.++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~a~--------~~gv~i~~~~~v~~i~~~-~~~v~gv 136 (453)
T 3atr_A 66 KGEELENKINGIKLYSPDMQTVWTVNGEGFELNAPLYNQRVLKEAQ--------DRGVEIWDLTTAMKPIFE-DGYVKGA 136 (453)
T ss_dssp CGGGEEEEEEEEEEECTTSSCEEEEEEEEEEECHHHHHHHHHHHHH--------HTTCEEESSEEEEEEEEE-TTEEEEE
T ss_pred chHHHHhhhcceEEECCCCceEEeECCCcEEEcHHHHHHHHHHHHH--------HcCCEEEeCcEEEEEEEE-CCEEEEE
Confidence 00 0 111110000000000011113344444444331 468999999999998764 4566666
Q ss_pred EEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 296 NFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 296 ~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
.+.+.. .++..++.||.||.|+|..+..
T Consensus 137 ~~~~~~---~G~~~~~~ad~VV~AdG~~s~v 164 (453)
T 3atr_A 137 VLFNRR---TNEELTVYSKVVVEATGYSRSF 164 (453)
T ss_dssp EEEETT---TTEEEEEECSEEEECCGGGCTT
T ss_pred EEEEcC---CCceEEEEcCEEEECcCCchhh
Confidence 553210 2233489999999999987654
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00022 Score=67.35 Aligned_cols=33 Identities=33% Similarity=0.481 Sum_probs=31.4
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
++|+|||||+||+.+|..+++ .|.+|+|+|+.+
T Consensus 2 ~dViVIGgG~AG~~AA~~la~--~G~~V~liE~~~ 34 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLLR--LGVPVRLFEMRP 34 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHHH--TTCCEEEECCTT
T ss_pred CCEEEECchHHHHHHHHHHHH--CCCcEEEEeccC
Confidence 689999999999999999999 899999999876
|
| >2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00073 Score=62.29 Aligned_cols=86 Identities=16% Similarity=0.166 Sum_probs=60.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++|+|||+|+.|+.+|..|.+ .+.+|+++++.+.+. + ...+. .+..++.+++++.++.+..
T Consensus 151 ~~~~v~VvG~G~~g~e~A~~l~~--~g~~Vtlv~~~~~~~--------~----~~~~~---~~l~~~~gv~i~~~~~v~~ 213 (325)
T 2q7v_A 151 KGKKVVVIGGGDAAVEEGMFLTK--FADEVTVIHRRDTLR--------A----NKVAQ---ARAFANPKMKFIWDTAVEE 213 (325)
T ss_dssp TTCEEEEECCSHHHHHHHHHHTT--TCSEEEEECSSSSCC--------S----CHHHH---HHHHTCTTEEEECSEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--cCCEEEEEeCCCcCC--------c----chHHH---HHHHhcCCceEecCCceEE
Confidence 35799999999999999999999 799999999875431 1 11222 2233456899988776532
Q ss_pred --------Eeeec---cc---ccccCEEEEeeCCCCC
Q psy4525 92 --------DISLG---DL---TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 --------~~~~~---~~---~~~yd~lvlAtG~~~~ 114 (388)
.+... ++ ...+|.||+|+|..+.
T Consensus 214 i~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 250 (325)
T 2q7v_A 214 IQGADSVSGVKLRNLKTGEVSELATDGVFIFIGHVPN 250 (325)
T ss_dssp EEESSSEEEEEEEETTTCCEEEEECSEEEECSCEEES
T ss_pred EccCCcEEEEEEEECCCCcEEEEEcCEEEEccCCCCC
Confidence 12222 22 2379999999997663
|
| >3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00044 Score=67.55 Aligned_cols=89 Identities=21% Similarity=0.203 Sum_probs=61.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++++|||+|+.|+.+|..|++ .|.+|+++++.+.+. |.. ...++...+.+.++ ++++.++.+..
T Consensus 171 ~~~~vvViGgG~~g~e~A~~l~~--~g~~Vtlv~~~~~~l--------~~~-~d~~~~~~l~~~l~---v~i~~~~~v~~ 236 (466)
T 3l8k_A 171 LPQDMVIIGAGYIGLEIASIFRL--MGVQTHIIEMLDRAL--------ITL-EDQDIVNTLLSILK---LNIKFNSPVTE 236 (466)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSC--------TTS-CCHHHHHHHHHHHC---CCEECSCCEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--cCCEEEEEEeCCcCC--------CCC-CCHHHHHHHHhcCE---EEEEECCEEEE
Confidence 45899999999999999999999 899999999986542 211 13345555555554 66665544321
Q ss_pred ---------Eeeec--cc---ccccCEEEEeeCCCCC
Q psy4525 92 ---------DISLG--DL---TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ---------~~~~~--~~---~~~yd~lvlAtG~~~~ 114 (388)
.+... ++ ...+|.||+|+|..|.
T Consensus 237 i~~~~~~~v~v~~~~~~G~~~~i~~D~vi~a~G~~p~ 273 (466)
T 3l8k_A 237 VKKIKDDEYEVIYSTKDGSKKSIFTNSVVLAAGRRPV 273 (466)
T ss_dssp EEEEETTEEEEEECCTTSCCEEEEESCEEECCCEEEC
T ss_pred EEEcCCCcEEEEEEecCCceEEEEcCEEEECcCCCcc
Confidence 12333 22 2378999999997764
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00018 Score=72.11 Aligned_cols=40 Identities=15% Similarity=0.116 Sum_probs=35.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCc
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGL 53 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~ 53 (388)
..+||+|||||++|+++|..|++ .|.+|+|+|+.+..+|.
T Consensus 17 ~~~DVvVIGgGi~Gl~~A~~La~--~G~~V~LlEk~d~~~Gt 56 (561)
T 3da1_A 17 KQLDLLVIGGGITGAGIALDAQV--RGIQTGLVEMNDFASGT 56 (561)
T ss_dssp SCEEEEEECCSHHHHHHHHHHHT--TTCCEEEEESSSTTCSG
T ss_pred CCCCEEEECCCHHHHHHHHHHHh--CCCcEEEEECCCCCCCc
Confidence 46899999999999999999999 89999999998655543
|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00016 Score=73.35 Aligned_cols=54 Identities=11% Similarity=0.072 Sum_probs=43.2
Q ss_pred ceeEEEEecCcceeeeeCCC-CceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDN-GAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~-~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.++++++++.++++..+++ +++.++++.+. ..++..++.||.||+|+|..+++
T Consensus 272 ~~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~---~~g~~~~i~A~~VIlaaG~~~s~ 326 (623)
T 3pl8_A 272 EERFNLFPAVACERVVRNALNSEIESLHIHDL---ISGDRFEIKADVYVLTAGAVHNT 326 (623)
T ss_dssp EEEEEEECSEEEEEEEECTTSSCEEEEEEEET---TTCCEEEECEEEEEECSCTTHHH
T ss_pred CCCEEEEeCCEEEEEEEECCCCEEEEEEEEEc---CCCcEEEEECCEEEEcCCCcCCH
Confidence 46999999999999987543 48888887542 13555689999999999999886
|
| >3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00066 Score=64.24 Aligned_cols=44 Identities=9% Similarity=0.076 Sum_probs=33.1
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.|+++++++.++++.. ++ .+++ .+++++.+|.||.|+|..+..
T Consensus 119 ~~gv~i~~~~~v~~i~~--~~---~v~~--------~~g~~~~ad~vV~AdG~~s~v 162 (379)
T 3alj_A 119 ALGVDISVNSEAVAADP--VG---RLTL--------QTGEVLEADLIVGADGVGSKV 162 (379)
T ss_dssp HTTCEEESSCCEEEEET--TT---EEEE--------TTSCEEECSEEEECCCTTCHH
T ss_pred hcCCEEEeCCEEEEEEe--CC---EEEE--------CCCCEEEcCEEEECCCccHHH
Confidence 45899999999999975 23 3433 334579999999999988653
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0002 Score=70.73 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=32.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
.+||+|||||++|+++|..|++ .|.+|+|+|+.+..
T Consensus 3 ~~DVvIIGgGi~G~~~A~~La~--~G~~V~llE~~~~~ 38 (501)
T 2qcu_A 3 TKDLIVIGGGINGAGIAADAAG--RGLSVLMLEAQDLA 38 (501)
T ss_dssp CBSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSTT
T ss_pred cCCEEEECcCHHHHHHHHHHHh--CCCCEEEEECCCCC
Confidence 4799999999999999999999 89999999997643
|
| >3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00077 Score=61.54 Aligned_cols=86 Identities=10% Similarity=0.109 Sum_probs=61.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++++|||+|+.|+.+|..|.+ .+.+|+++++.+.+. ...++ ..+.+++.|++++.++.+..
T Consensus 146 ~~~~v~viG~g~~~~e~a~~l~~--~g~~v~~~~~~~~~~------------~~~~~---~~~~~~~~gv~~~~~~~v~~ 208 (315)
T 3r9u_A 146 KNKEVAVLGGGDTALEEALYLAN--ICSKIYLIHRRDEFR------------AAPST---VEKVKKNEKIELITSASVDE 208 (315)
T ss_dssp TTSEEEEECCBHHHHHHHHHHHT--TSSEEEEECSSSSCB------------SCHHH---HHHHHHCTTEEEECSCEEEE
T ss_pred CcCEEEEECCCHHHHHHHHHHHh--hCCEEEEEEeCCCCC------------CCHHH---HHHHHhcCCeEEEeCcEEEE
Confidence 45799999999999999999999 799999999885531 11122 23334578999997766532
Q ss_pred E---------eeec--cc---ccccCEEEEeeCCCCC
Q psy4525 92 D---------ISLG--DL---TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 ~---------~~~~--~~---~~~yd~lvlAtG~~~~ 114 (388)
. +.+. ++ ...+|.||+|+|..|.
T Consensus 209 i~~~~~~~~~v~~~~~~g~~~~~~~D~vv~a~G~~p~ 245 (315)
T 3r9u_A 209 VYGDKMGVAGVKVKLKDGSIRDLNVPGIFTFVGLNVR 245 (315)
T ss_dssp EEEETTEEEEEEEECTTSCEEEECCSCEEECSCEEEC
T ss_pred EEcCCCcEEEEEEEcCCCCeEEeecCeEEEEEcCCCC
Confidence 1 2222 33 2379999999997663
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00014 Score=72.22 Aligned_cols=37 Identities=27% Similarity=0.420 Sum_probs=32.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhC----------CCCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLL----------PQSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~----------~g~~v~lie~~~~ 49 (388)
.++|+|||||+||+.+|..|++.. .|++|+|+|+.+.
T Consensus 7 ~~dVvIVGgG~aGl~aA~~La~~~~~~~~~~~~~~G~~V~liE~~~~ 53 (526)
T 2pyx_A 7 ITEIIIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDV 53 (526)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHHHHEETTEECSSCSCEEEEEECSSC
T ss_pred CCeEEEECCCHHHHHHHHHHHhhhccccccccCCCCCeEEEEeCCCC
Confidence 479999999999999999999832 6899999998754
|
| >2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00055 Score=66.82 Aligned_cols=54 Identities=9% Similarity=0.040 Sum_probs=32.9
Q ss_pred eeEE--EEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccc--cCCccC
Q psy4525 271 KYFR--PIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIG--YQSRCV 327 (388)
Q Consensus 271 ~gv~--~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G--~~p~~~ 327 (388)
.++. +++++.++.+...+++..-.+.+.++ ..+...++.+|.||+||| ..|+.+
T Consensus 114 ~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~---~~g~~~~~~~d~VVvAtG~~s~p~~p 171 (464)
T 2xve_A 114 AGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDH---TTDTIYSEEFDYVVCCTGHFSTPYVP 171 (464)
T ss_dssp HTCGGGEECSEEEEEEEEETTTTEEEEEEEET---TTTEEEEEEESEEEECCCSSSSBCCC
T ss_pred cCCcceEEeCCEEEEEEEcCCCCcEEEEEEEc---CCCceEEEEcCEEEECCCCCCCCccC
Confidence 3555 77788888887643321223333221 023336789999999999 566543
|
| >4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.001 Score=60.83 Aligned_cols=23 Identities=17% Similarity=0.122 Sum_probs=19.2
Q ss_pred CCceeEEecceEEEccccCCccC
Q psy4525 305 TEDTELIPSGIAFRSIGYQSRCV 327 (388)
Q Consensus 305 ~~~~~~l~~D~Vi~a~G~~p~~~ 327 (388)
+.+++++.+|.||+|||.+|..+
T Consensus 98 ~~~g~~~~a~~liiATGs~p~~p 120 (304)
T 4fk1_A 98 TKDHTKYLAERVLLATGMQEEFP 120 (304)
T ss_dssp ETTCCEEEEEEEEECCCCEEECC
T ss_pred ECCCCEEEeCEEEEccCCccccc
Confidence 45667899999999999988654
|
| >1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00073 Score=61.77 Aligned_cols=84 Identities=14% Similarity=0.125 Sum_probs=59.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcC-CCcEEEceEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDN-PRVNFYGNICLG 90 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~-~~i~~~~~~~v~ 90 (388)
..++|+|||+|+.|+.+|..|.+ .+.+|+++++.+.+. ... .+.+.+.+ .+++++.++.+.
T Consensus 143 ~~~~v~VvG~G~~g~e~A~~l~~--~g~~Vtlv~~~~~~~------------~~~----~~~~~l~~~~gv~v~~~~~v~ 204 (310)
T 1fl2_A 143 KGKRVAVIGGGNSGVEAAIDLAG--IVEHVTLLEFAPEMK------------ADQ----VLQDKLRSLKNVDIILNAQTT 204 (310)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHT--TBSEEEEECSSSSCC------------SCH----HHHHHHHTCTTEEEESSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--hCCEEEEEEeCcccC------------ccH----HHHHHHhhCCCeEEecCCceE
Confidence 35799999999999999999999 799999999886541 011 12233444 689998876653
Q ss_pred E---------Eeeecc---c---ccccCEEEEeeCCCC
Q psy4525 91 Q---------DISLGD---L---TNAYHAVVLTYGADN 113 (388)
Q Consensus 91 ~---------~~~~~~---~---~~~yd~lvlAtG~~~ 113 (388)
. .+...+ . ...+|.||+|+|..|
T Consensus 205 ~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p 242 (310)
T 1fl2_A 205 EVKGDGSKVVGLEYRDRVSGDIHNIELAGIFVQIGLLP 242 (310)
T ss_dssp EEEESSSSEEEEEEEETTTCCEEEEECSEEEECSCEEE
T ss_pred EEEcCCCcEEEEEEEECCCCcEEEEEcCEEEEeeCCcc
Confidence 2 122221 2 237899999999766
|
| >4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00053 Score=68.45 Aligned_cols=45 Identities=13% Similarity=0.133 Sum_probs=31.1
Q ss_pred EEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccc--cCCcc
Q psy4525 274 RPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIG--YQSRC 326 (388)
Q Consensus 274 ~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G--~~p~~ 326 (388)
.+++++.++++..+++...-.++ +.+++++.||.||+|+| .+|..
T Consensus 117 ~i~~~~~V~~i~~~~~~~~w~V~--------~~~G~~i~ad~lV~AtG~~s~p~~ 163 (549)
T 4ap3_A 117 DIRFDTRVTSAVLDEEGLRWTVR--------TDRGDEVSARFLVVAAGPLSNANT 163 (549)
T ss_dssp GEECSCCEEEEEEETTTTEEEEE--------ETTCCEEEEEEEEECCCSEEECCC
T ss_pred cEEECCEEEEEEEcCCCCEEEEE--------ECCCCEEEeCEEEECcCCCCCCCC
Confidence 67778888888765443333443 34556799999999999 45544
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00023 Score=71.18 Aligned_cols=38 Identities=24% Similarity=0.384 Sum_probs=33.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhC-CCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLL-PQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~-~g~~v~lie~~~~ 49 (388)
..++|+|||||+||+++|..|++.. .|.+|+|||+.+.
T Consensus 24 ~~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~ 62 (550)
T 2e4g_A 24 KIDKILIVGGGTAGWMAASYLGKALQGTADITLLQAPDI 62 (550)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTTTSSEEEEEECCCC
T ss_pred CCCcEEEECCCHHHHHHHHHHHhhcCCCCcEEEEeCCCC
Confidence 3579999999999999999999965 6899999998753
|
| >2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00071 Score=65.68 Aligned_cols=46 Identities=11% Similarity=0.112 Sum_probs=35.7
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQS 324 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p 324 (388)
+.|+++++++.++++..+ ++.+..++.. +++++.||.||+|+|..+
T Consensus 146 ~~GV~i~~~~~V~~i~~~-~~~v~~V~~~--------~G~~i~Ad~VVlAtGg~s 191 (447)
T 2i0z_A 146 DLGVKIRTNTPVETIEYE-NGQTKAVILQ--------TGEVLETNHVVIAVGGKS 191 (447)
T ss_dssp HTTCEEECSCCEEEEEEE-TTEEEEEEET--------TCCEEECSCEEECCCCSS
T ss_pred HCCCEEEeCcEEEEEEec-CCcEEEEEEC--------CCCEEECCEEEECCCCCc
Confidence 468999999999999764 3565666542 334699999999999877
|
| >3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00011 Score=68.81 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=30.7
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCC------CcEEEEcCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQ------STVDIYEKLPV 49 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g------~~v~lie~~~~ 49 (388)
+||+|||||++|+++|..|++ .| .+|+|+|+...
T Consensus 1 mdVvIIGgGi~Gls~A~~La~--~G~~~~p~~~V~vlE~~~~ 40 (351)
T 3g3e_A 1 MRVVVIGAGVIGLSTALCIHE--RYHSVLQPLDIKVYADRFT 40 (351)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--HHTTTSSSCEEEEEESSCG
T ss_pred CcEEEECCCHHHHHHHHHHHH--hccccCCCceEEEEECCCC
Confidence 489999999999999999999 55 89999999853
|
| >3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00092 Score=63.03 Aligned_cols=137 Identities=9% Similarity=0.148 Sum_probs=77.5
Q ss_pred eEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCccccc------CCHHHHHHHhcCC---
Q psy4525 154 EATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVA------FTIKEFREMTKLP--- 224 (388)
Q Consensus 154 ~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~------~~~~el~~l~~~~--- 224 (388)
.|+|||||.+|+-+|..|+ +.|. +|+++.|++.+..+ .++.-+.++.-..
T Consensus 6 DViIVGaGpaGl~~A~~La--------------------~~G~-~V~v~Er~~~~~~~~~~g~~l~~~~l~~l~~~~~~~ 64 (397)
T 3oz2_A 6 DVLVVGGGPGGSTAARYAA--------------------KYGL-KTLMIEKRPEIGSPVRCGEGLSKGILNEADIKADRS 64 (397)
T ss_dssp EEEEECCSHHHHHHHHHHH--------------------HTTC-CEEEECSSSSTTCSCCSCCEEETHHHHHTTCCCCTT
T ss_pred CEEEECcCHHHHHHHHHHH--------------------HCCC-cEEEEeCCCCCCCCCceecccCHHHHHHcCCCchhh
Confidence 5999999999999999887 4554 59999987654322 1223333332111
Q ss_pred CceE------Eecccccccch-h---hhc--cccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCce
Q psy4525 225 HVQT------VFRNEQLCGVH-E---ASA--TLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAI 292 (388)
Q Consensus 225 ~~~~------~~~~~~~~~~~-~---~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v 292 (388)
.+.. .+.+.....+. . ... ...-.+..+...+...+. +.|+++++++.++.+..+ ++.+
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~R~~~~~~L~~~a~--------~~G~~~~~~~~v~~~~~~-~~~~ 135 (397)
T 3oz2_A 65 FIANEVKGARIYGPSEKRPIILQSEKAGNEVGYVLERDKFDKHLAALAA--------KAGADVWVKSPALGVIKE-NGKV 135 (397)
T ss_dssp TEEEEESEEEEECTTCSSCEEEECSSSSCCCEEEECHHHHHHHHHHHHH--------HHTCEEESSCCEEEEEEE-TTEE
T ss_pred hhhcccceEEEEeCCCceEeeccccccCCceeEEEEHHHHHHHHHHHHH--------hcCcEEeeeeeeeeeeec-ccee
Confidence 1111 11111110000 0 000 001113444444443322 578999999999988764 4566
Q ss_pred eEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 293 TGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 293 ~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
..+... ..++..++.||.||-|.|....
T Consensus 136 ~~v~~~-----~~~~~~~~~a~~vIgAdG~~S~ 163 (397)
T 3oz2_A 136 AGAKIR-----HNNEIVDVRAKMVIAADGFESE 163 (397)
T ss_dssp EEEEEE-----ETTEEEEEEEEEEEECCCTTCH
T ss_pred eeeeec-----ccccceEEEEeEEEeCCccccH
Confidence 555442 2455678999999999998753
|
| >4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0002 Score=74.19 Aligned_cols=41 Identities=32% Similarity=0.379 Sum_probs=37.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
..++|+|||||++|+++|..|.+ .|.+|+|+|+.+.+||..
T Consensus 335 ~~~~v~viG~G~~Gl~aA~~l~~--~g~~v~v~E~~~~~ggri 375 (776)
T 4gut_A 335 HNKSVIIIGAGPAGLAAARQLHN--FGIKVTVLEAKDRIGGRV 375 (776)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHH--HTCEEEEECSSSSSCTTC
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--CCCcEEEEecccceecee
Confidence 35799999999999999999999 799999999998888743
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00025 Score=70.59 Aligned_cols=37 Identities=30% Similarity=0.581 Sum_probs=32.7
Q ss_pred CCcEEEECccHHHHHHHHHHHhhC-CCCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLL-PQSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~-~g~~v~lie~~~~ 49 (388)
.++|+|||||++|+++|..|++.. .|.+|+|+|+...
T Consensus 5 ~~dVvIVGgG~aGl~aA~~La~~~~~G~~V~liE~~~~ 42 (538)
T 2aqj_A 5 IKNIVIVGGGTAGWMAASYLVRALQQQANITLIESAAI 42 (538)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCCSSCEEEEEECSSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhhcCCCCEEEEECCCCC
Confidence 479999999999999999999855 6899999999643
|
| >3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00013 Score=70.72 Aligned_cols=37 Identities=19% Similarity=0.224 Sum_probs=32.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCC-CcEEEEcCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQ-STVDIYEKLPVP 50 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g-~~v~lie~~~~~ 50 (388)
..+||+|||||++|+++|..|++ .| .+|+|+|+...+
T Consensus 22 ~~~dVvIIGgGiaGls~A~~La~--~G~~~V~vlE~~~~~ 59 (448)
T 3axb_A 22 PRFDYVVVGAGVVGLAAAYYLKV--WSGGSVLVVDAGHAP 59 (448)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHH--HHCSCEEEEESSSST
T ss_pred CcCCEEEECcCHHHHHHHHHHHh--CCCCcEEEEccCCCC
Confidence 45799999999999999999999 78 899999993333
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00027 Score=67.30 Aligned_cols=37 Identities=27% Similarity=0.256 Sum_probs=32.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCC-CcEEEEcCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQ-STVDIYEKLPVP 50 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g-~~v~lie~~~~~ 50 (388)
.++|+|||||++|+++|..|++. .| .+|+|+|+.+..
T Consensus 21 ~~dVvIIG~G~~Gl~~A~~La~~-~G~~~V~vlE~~~~~ 58 (405)
T 2gag_B 21 SYDAIIVGGGGHGLATAYFLAKN-HGITNVAVLEKGWLA 58 (405)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHH-HCCCCEEEECSSSTT
T ss_pred cCCEEEECcCHHHHHHHHHHHHh-cCCCcEEEEeCCCCC
Confidence 57999999999999999999982 27 899999998743
|
| >2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0018 Score=61.91 Aligned_cols=47 Identities=6% Similarity=-0.108 Sum_probs=33.8
Q ss_pred ceeEEEEecCcceeeeeCC---CCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLND---NGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~---~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.|+++++++.++++..++ ++.+ .++ +.++ ++.||.||+|+|..+.+
T Consensus 121 ~~Gv~i~~~~~v~~i~~~~~g~~~~~-~v~--------~~~g-~i~ad~VVlAtG~~s~p 170 (401)
T 2gqf_A 121 KYGAKILLRSEVSQVERIQNDEKVRF-VLQ--------VNST-QWQCKNLIVATGGLSMP 170 (401)
T ss_dssp HHTCEEECSCCEEEEEECCSCSSCCE-EEE--------ETTE-EEEESEEEECCCCSSCG
T ss_pred HCCCEEEeCCEEEEEEcccCcCCCeE-EEE--------ECCC-EEECCEEEECCCCccCC
Confidence 5689999999999998541 1222 232 2333 69999999999998843
|
| >4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00066 Score=67.09 Aligned_cols=50 Identities=12% Similarity=0.067 Sum_probs=39.2
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecc-eEEEccccCC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSG-IAFRSIGYQS 324 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D-~Vi~a~G~~p 324 (388)
+.|+++++++.++++..+++++|.++...+ .++..++.|| .||+|||--.
T Consensus 214 ~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~-----~g~~~~i~A~k~VVlAtGG~~ 264 (510)
T 4at0_A 214 KLGVRAEYDMRVQTLVTDDTGRVVGIVAKQ-----YGKEVAVRARRGVVLATGSFA 264 (510)
T ss_dssp HTTCEEECSEEEEEEEECTTCCEEEEEEEE-----TTEEEEEEEEEEEEECCCCCT
T ss_pred HcCCEEEecCEeEEEEECCCCcEEEEEEEE-----CCcEEEEEeCCeEEEeCCChh
Confidence 468999999999999886568898887643 2334579997 9999999654
|
| >3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00087 Score=61.61 Aligned_cols=84 Identities=14% Similarity=0.137 Sum_probs=58.6
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE-
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ- 91 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~- 91 (388)
.++++|||+|+.|+.+|..|.+ .+.+|+++++.+.+. + ...+.+ .+.+.|++++.++.+..
T Consensus 155 ~~~v~viG~G~~g~e~a~~l~~--~g~~V~~i~~~~~~~--------~----~~~l~~----~l~~~gv~i~~~~~v~~i 216 (319)
T 3cty_A 155 GKRVVTIGGGNSGAIAAISMSE--YVKNVTIIEYMPKYM--------C----ENAYVQ----EIKKRNIPYIMNAQVTEI 216 (319)
T ss_dssp TSEEEEECCSHHHHHHHHHHTT--TBSEEEEECSSSSCC--------S----CHHHHH----HHHHTTCCEECSEEEEEE
T ss_pred CCeEEEECCCHHHHHHHHHHHh--hCCcEEEEEcCCccC--------C----CHHHHH----HHhcCCcEEEcCCeEEEE
Confidence 5789999999999999999999 799999999875431 1 122222 23356888887766532
Q ss_pred --------Eeeec---cc---ccccCEEEEeeCCCCC
Q psy4525 92 --------DISLG---DL---TNAYHAVVLTYGADND 114 (388)
Q Consensus 92 --------~~~~~---~~---~~~yd~lvlAtG~~~~ 114 (388)
.+... +. ...+|.||+|+|..+.
T Consensus 217 ~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p~ 253 (319)
T 3cty_A 217 VGDGKKVTGVKYKDRTTGEEKLIETDGVFIYVGLIPQ 253 (319)
T ss_dssp EESSSSEEEEEEEETTTCCEEEECCSEEEECCCEEEC
T ss_pred ecCCceEEEEEEEEcCCCceEEEecCEEEEeeCCccC
Confidence 12222 22 2378999999997663
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00026 Score=71.25 Aligned_cols=36 Identities=25% Similarity=0.363 Sum_probs=32.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
..||+|||||+||++||..|++ .|.+|+|+|+.+..
T Consensus 7 ~~DVvVVGaG~AGl~AA~~la~--~G~~V~vlEK~~~~ 42 (588)
T 2wdq_A 7 EFDAVVIGAGGAGMRAALQISQ--SGQTCALLSKVFPT 42 (588)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCGG
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCC
Confidence 4699999999999999999999 89999999998654
|
| >1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0018 Score=64.96 Aligned_cols=51 Identities=12% Similarity=0.102 Sum_probs=38.5
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQS 324 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p 324 (388)
+.|+++++++.++++..++++++.++.+.+. .+...++.+|.||+|+|...
T Consensus 267 ~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~----~g~~~~i~a~~VVlAtGg~~ 317 (571)
T 1y0p_A 267 KRNIDLRMNTRGIEVLKDDKGTVKGILVKGM----YKGYYWVKADAVILATGGFA 317 (571)
T ss_dssp HTTCEEESSEEEEEEEECTTSCEEEEEEEET----TTEEEEEECSEEEECCCCCT
T ss_pred hcCCEEEeCCEeeEeEEcCCCeEEEEEEEeC----CCcEEEEECCeEEEeCCCcc
Confidence 4689999999999998754478888776421 23334799999999999743
|
| >4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0011 Score=60.68 Aligned_cols=36 Identities=25% Similarity=0.221 Sum_probs=32.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
..++++|||+|+.|+.+|..|.+ .|.+|+++++.+.
T Consensus 151 ~~~~vvViGgG~ig~e~A~~l~~--~G~~Vt~v~~~~~ 186 (314)
T 4a5l_A 151 RNKVLMVVGGGDAAMEEALHLTK--YGSKVIILHRRDA 186 (314)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTT--TSSEEEEECSSSS
T ss_pred CCCeEEEECCChHHHHHHHHHHH--hCCeeeeeccccc
Confidence 45799999999999999999999 8999999998643
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00075 Score=69.28 Aligned_cols=92 Identities=11% Similarity=-0.096 Sum_probs=64.9
Q ss_pred CCCcEEEEC--ccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEE
Q psy4525 12 LKPNVCIVG--SGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICL 89 (388)
Q Consensus 12 ~~~~vvIIG--aG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v 89 (388)
..++|+||| +|+.|+.+|..|.+ .+.+|+++++.+.+.... ........+.+.+++.|++++.++.+
T Consensus 522 ~g~~VvViG~ggG~~g~e~A~~L~~--~g~~Vtlv~~~~~l~~~~---------~~~~~~~~l~~~l~~~GV~i~~~~~V 590 (690)
T 3k30_A 522 DGKKVVVYDDDHYYLGGVVAELLAQ--KGYEVSIVTPGAQVSSWT---------NNTFEVNRIQRRLIENGVARVTDHAV 590 (690)
T ss_dssp SSSEEEEEECSCSSHHHHHHHHHHH--TTCEEEEEESSSSTTGGG---------GGGTCHHHHHHHHHHTTCEEEESEEE
T ss_pred CCCEEEEEcCCCCccHHHHHHHHHh--CCCeeEEEeccccccccc---------ccchhHHHHHHHHHHCCCEEEcCcEE
Confidence 356899999 99999999999999 899999999886643211 11123344556667789999988776
Q ss_pred EEE------eee---ccc-ccccCEEEEeeCCCCC
Q psy4525 90 GQD------ISL---GDL-TNAYHAVVLTYGADND 114 (388)
Q Consensus 90 ~~~------~~~---~~~-~~~yd~lvlAtG~~~~ 114 (388)
... +.. .+. ...+|.||+|+|..+.
T Consensus 591 ~~i~~~~~~v~~~~~~~~~~i~aD~VV~A~G~~p~ 625 (690)
T 3k30_A 591 VAVGAGGVTVRDTYASIERELECDAVVMVTARLPR 625 (690)
T ss_dssp EEEETTEEEEEETTTCCEEEEECSEEEEESCEEEC
T ss_pred EEEECCeEEEEEccCCeEEEEECCEEEECCCCCCC
Confidence 421 221 112 2379999999997763
|
| >2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00044 Score=69.39 Aligned_cols=39 Identities=21% Similarity=0.187 Sum_probs=34.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
..+||+|||||.+|+++|..|++ .|.+|+|+|+.+..+|
T Consensus 31 ~~~DVvVIGgGi~G~~~A~~La~--rG~~V~LlE~~~~~~G 69 (571)
T 2rgh_A 31 EELDLLIIGGGITGAGVAVQAAA--SGIKTGLIEMQDFAEG 69 (571)
T ss_dssp SCBSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSTTCS
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCC
Confidence 35799999999999999999999 8999999999864433
|
| >3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00067 Score=67.61 Aligned_cols=45 Identities=16% Similarity=0.213 Sum_probs=28.5
Q ss_pred EEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccc--cCCcc
Q psy4525 274 RPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIG--YQSRC 326 (388)
Q Consensus 274 ~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G--~~p~~ 326 (388)
.+++++.++++..+++...-.++ +.+++++.||.||+|+| .+|+.
T Consensus 105 ~i~~~~~V~~~~~~~~~~~w~V~--------~~~G~~~~ad~lV~AtG~~s~p~~ 151 (545)
T 3uox_A 105 HYRFNTRVTAARYVENDRLWEVT--------LDNEEVVTCRFLISATGPLSASRM 151 (545)
T ss_dssp GEECSCCEEEEEEEGGGTEEEEE--------ETTTEEEEEEEEEECCCSCBC---
T ss_pred cEEECCEEEEEEEeCCCCEEEEE--------ECCCCEEEeCEEEECcCCCCCCcC
Confidence 56677888887754433333333 34566899999999999 45554
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00033 Score=70.90 Aligned_cols=35 Identities=23% Similarity=0.243 Sum_probs=32.3
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
..||+|||||+||++||..|++ .|.+|+|+|+.+.
T Consensus 18 ~~DVvVVG~G~AGl~AAl~aa~--~G~~V~vlEK~~~ 52 (621)
T 2h88_A 18 EFDAVVVGAGGAGLRAAFGLSE--AGFNTACVTKLFP 52 (621)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCG
T ss_pred cCCEEEECccHHHHHHHHHHHH--CCCcEEEEeccCC
Confidence 4699999999999999999999 8999999999754
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00037 Score=71.05 Aligned_cols=36 Identities=19% Similarity=0.280 Sum_probs=32.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
..||+|||||.||++||..|++ .|.+|+|+|+.+..
T Consensus 5 ~~DVvVIGgG~AGL~AAl~aae--~G~~V~vlEK~~~~ 40 (660)
T 2bs2_A 5 YCDSLVIGGGLAGLRAAVATQQ--KGLSTIVLSLIPVK 40 (660)
T ss_dssp ECSEEEECCSHHHHHHHHHHHT--TTCCEEEECSSCGG
T ss_pred cccEEEECchHHHHHHHHHHHH--CCCcEEEEeccCCC
Confidence 3699999999999999999999 89999999998643
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00024 Score=70.24 Aligned_cols=36 Identities=31% Similarity=0.411 Sum_probs=30.2
Q ss_pred CcEEEECccHHHHHHHHHHHhhC-CCCcEEEEcCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLL-PQSTVDIYEKLPV 49 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~-~g~~v~lie~~~~ 49 (388)
++|+|||||++|+++|..|++.. .|.+|+|+|+.+.
T Consensus 3 ~dVvIVGgG~aGl~~A~~La~~~~~G~~V~lvE~~~~ 39 (511)
T 2weu_A 3 RSVVIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNV 39 (511)
T ss_dssp CEEEEECCHHHHHHHHHHHHHHHGGGSEEEEEEC---
T ss_pred ceEEEECCCHHHHHHHHHHHhhcCCCCEEEEEecCCC
Confidence 69999999999999999999843 5899999998753
|
| >2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0033 Score=63.19 Aligned_cols=56 Identities=9% Similarity=0.074 Sum_probs=39.8
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCC-------ceeEEecceEEEccccCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTE-------DTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~-------~~~~l~~D~Vi~a~G~~p~ 325 (388)
+.|+++++++.++++..++++.+.++.+.+...-..+ ++.++.+|.||.|.|....
T Consensus 156 ~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~Ad~VV~AdG~~S~ 218 (584)
T 2gmh_A 156 ALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGH 218 (584)
T ss_dssp HTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCH
T ss_pred HcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEECCEEEEeeCCCch
Confidence 4589999999999998766577877776420000011 1357999999999998864
|
| >2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0023 Score=61.95 Aligned_cols=36 Identities=8% Similarity=-0.040 Sum_probs=32.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCc-EEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQST-VDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~-v~lie~~~~ 49 (388)
..++|+|||+|++|+.+|..|.+ .+.+ |+++++.+.
T Consensus 211 ~~k~VvVvG~G~sg~e~A~~l~~--~~~~~V~l~~r~~~ 247 (447)
T 2gv8_A 211 VGESVLVVGGASSANDLVRHLTP--VAKHPIYQSLLGGG 247 (447)
T ss_dssp TTCCEEEECSSHHHHHHHHHHTT--TSCSSEEEECTTCC
T ss_pred CCCEEEEEccCcCHHHHHHHHHH--HhCCcEEEEeCCCC
Confidence 46899999999999999999999 7888 999998754
|
| >3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00018 Score=73.43 Aligned_cols=36 Identities=28% Similarity=0.399 Sum_probs=33.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCC--------CcEEEEcCCC-CC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQ--------STVDIYEKLP-VP 50 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g--------~~v~lie~~~-~~ 50 (388)
+++|+|||||++||+||..|.+ .| ++|+|||+.+ .+
T Consensus 56 ~~~v~IiGaGiaGL~aA~~L~~--~g~~~~~~~~~~V~v~E~~~~r~ 100 (721)
T 3ayj_A 56 NYRIAIVGGGAGGIAALYELGR--LAATLPAGSGIDVQIYEADPDSF 100 (721)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--HHTTSCTTCEEEEEEECCCTTBG
T ss_pred CCeEEEECCCHHHHHHHHHHHH--cCcccccCCCceEEEEeccCccc
Confidence 4789999999999999999998 66 8999999998 88
|
| >3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0038 Score=59.50 Aligned_cols=134 Identities=16% Similarity=0.127 Sum_probs=73.9
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCccccc-----CCHHHHHHHh-----
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVA-----FTIKEFREMT----- 221 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~-----~~~~el~~l~----- 221 (388)
..+|+|||||.+|+-+|..|+ +.|. +|++++|.+..... +.+.-++.+.
T Consensus 23 ~~dV~IVGaG~aGl~~A~~La--------------------~~G~-~V~v~E~~~~~~~~~~~~~l~~~~~~~l~~lg~~ 81 (407)
T 3rp8_A 23 HMKAIVIGAGIGGLSAAVALK--------------------QSGI-DCDVYEAVKEIKPVGAAISVWPNGVKCMAHLGMG 81 (407)
T ss_dssp CCEEEEECCSHHHHHHHHHHH--------------------HTTC-EEEEEESSSCC----CEEEECHHHHHHHHHTTCH
T ss_pred CCEEEEECCCHHHHHHHHHHH--------------------hCCC-CEEEEeCCCCCCCcCeeEEECHHHHHHHHHCCCH
Confidence 468999999999999999886 3454 69999988653211 1111111111
Q ss_pred ------cCCCceEEecccc-cc---cch-----hh--hccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceee
Q psy4525 222 ------KLPHVQTVFRNEQ-LC---GVH-----EA--SATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEF 284 (388)
Q Consensus 222 ------~~~~~~~~~~~~~-~~---~~~-----~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i 284 (388)
..+.....+.... -. .+. .. .....-.+..+...|...+. . +.+++++.++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~i~r~~l~~~L~~~~~---------~-~~i~~~~~v~~i 151 (407)
T 3rp8_A 82 DIMETFGGPLRRMAYRDFRSGENMTQFSLAPLIERTGSRPCPVSRAELQREMLDYWG---------R-DSVQFGKRVTRC 151 (407)
T ss_dssp HHHHHHSCCCCEEEEEETTTCCEEEEEECHHHHHHHSSCCEEEEHHHHHHHHHHHHC---------G-GGEEESCCEEEE
T ss_pred HHHHhhcCCCcceEEEECCCCCEeEEecchhhhhhcCCceEEEEHHHHHHHHHHhCC---------c-CEEEECCEEEEE
Confidence 1111112111111 00 000 00 00111124555566655442 2 778899999999
Q ss_pred eeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 285 KLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 285 ~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
..++ +.+ .+.+ .+++++.||.||.|.|.....
T Consensus 152 ~~~~-~~v-~v~~--------~~g~~~~a~~vV~AdG~~S~v 183 (407)
T 3rp8_A 152 EEDA-DGV-TVWF--------TDGSSASGDLLIAADGSHSAL 183 (407)
T ss_dssp EEET-TEE-EEEE--------TTSCEEEESEEEECCCTTCSS
T ss_pred EecC-CcE-EEEE--------cCCCEEeeCEEEECCCcChHH
Confidence 8654 322 2332 345589999999999987543
|
| >3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0046 Score=62.34 Aligned_cols=46 Identities=9% Similarity=0.055 Sum_probs=34.3
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
.|+++ +...++.+..+ ++.+.++.. .++.++.||.||+|||..+..
T Consensus 138 ~GV~I-~~~~V~~L~~e-~g~V~GV~t--------~dG~~I~Ad~VVLATGt~s~~ 183 (651)
T 3ces_A 138 PNLMI-FQQAVEDLIVE-NDRVVGAVT--------QMGLKFRAKAVVLTVGTFLDG 183 (651)
T ss_dssp TTEEE-EECCEEEEEES-SSBEEEEEE--------TTSEEEEEEEEEECCSTTTCC
T ss_pred CCCEE-EEEEEEEEEec-CCEEEEEEE--------CCCCEEECCEEEEcCCCCccC
Confidence 58888 66788888754 466767754 334689999999999987653
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00045 Score=68.80 Aligned_cols=37 Identities=38% Similarity=0.486 Sum_probs=32.7
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
..||+|||||+||+++|..|++ |.+|+|+|+.+..+|
T Consensus 8 ~~DVvVVG~G~AGl~aAl~la~---G~~V~vlEk~~~~~g 44 (540)
T 1chu_A 8 SCDVLIIGSGAAGLSLALRLAD---QHQVIVLSKGPVTEG 44 (540)
T ss_dssp ECSEEEECCSHHHHHHHHHHTT---TSCEEEECSSCTTC-
T ss_pred CCCEEEECccHHHHHHHHHHhc---CCcEEEEECCCCCCC
Confidence 4799999999999999999987 899999999876553
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00036 Score=70.39 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=31.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCC--CcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQ--STVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g--~~v~lie~~~~ 49 (388)
.+||+|||||+||+++|..|++ .| .+|+|+|+.+.
T Consensus 5 ~~DVvIVG~G~AGl~aAl~la~--~G~~~~V~vlEk~~~ 41 (602)
T 1kf6_A 5 QADLAIVGAGGAGLRAAIAAAQ--ANPNAKIALISKVYP 41 (602)
T ss_dssp ECSEEEECCSHHHHHHHHHHHH--HCTTCCEEEEESSCG
T ss_pred cCCEEEECCCHHHHHHHHHHHh--cCCCCcEEEEeCCCC
Confidence 3699999999999999999999 78 99999999754
|
| >3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0054 Score=57.11 Aligned_cols=49 Identities=10% Similarity=0.226 Sum_probs=35.5
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
+.|+++++++.++++..++++.+ .+... .++..++.||.||+|+|....
T Consensus 162 ~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~------~g~~~~~~a~~VV~A~G~~s~ 210 (369)
T 3dme_A 162 SDGAQLVFHTPLIAGRVRPEGGF-ELDFG------GAEPMTLSCRVLINAAGLHAP 210 (369)
T ss_dssp HTTCEEECSCCEEEEEECTTSSE-EEEEC------TTSCEEEEEEEEEECCGGGHH
T ss_pred HCCCEEECCCEEEEEEEcCCceE-EEEEC------CCceeEEEeCEEEECCCcchH
Confidence 56899999999999987654433 34432 233358999999999998653
|
| >1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0024 Score=63.92 Aligned_cols=51 Identities=10% Similarity=0.086 Sum_probs=38.0
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQS 324 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p 324 (388)
+.|+++++++.++++..+++++|.++.+.+. .++...+.+|.||+|+|-..
T Consensus 262 ~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~----~g~~~~i~A~~VVlAtGg~s 312 (566)
T 1qo8_A 262 EQGIDTRLNSRVVKLVVNDDHSVVGAVVHGK----HTGYYMIGAKSVVLATGGYG 312 (566)
T ss_dssp HTTCCEECSEEEEEEEECTTSBEEEEEEEET----TTEEEEEEEEEEEECCCCCT
T ss_pred hcCCEEEeCCEEEEEEECCCCcEEEEEEEeC----CCcEEEEEcCEEEEecCCcc
Confidence 4689999999999998754378888776421 23334789999999999654
|
| >2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0039 Score=62.63 Aligned_cols=46 Identities=7% Similarity=-0.018 Sum_probs=34.4
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
.|+++ +...++++..+ ++.+.++.. .++.++.||.||+|||..++.
T Consensus 137 ~GVeI-~~~~Vt~L~~e-~g~V~GV~t--------~dG~~i~AdaVVLATG~~s~~ 182 (637)
T 2zxi_A 137 ENLYI-KQEEVVDIIVK-NNQVVGVRT--------NLGVEYKTKAVVVTTGTFLNG 182 (637)
T ss_dssp TTEEE-EESCEEEEEES-SSBEEEEEE--------TTSCEEECSEEEECCTTCBTC
T ss_pred CCCEE-EEeEEEEEEec-CCEEEEEEE--------CCCcEEEeCEEEEccCCCccC
Confidence 58888 57788888764 467777764 334689999999999987653
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0005 Score=69.94 Aligned_cols=37 Identities=38% Similarity=0.548 Sum_probs=32.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
.++|+||||||+|+++|..|++. .|++|+|||+.+.+
T Consensus 32 ~~dVlIVGaGpaGL~~A~~La~~-~G~~V~viEr~~~~ 68 (639)
T 2dkh_A 32 QVDVLIVGCGPAGLTLAAQLAAF-PDIRTCIVEQKEGP 68 (639)
T ss_dssp EEEEEEECCSHHHHHHHHHHTTC-TTSCEEEECSSSSC
T ss_pred CCcEEEECcCHHHHHHHHHHHHh-CCCCEEEEeCCCCC
Confidence 46899999999999999999972 38999999987654
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00037 Score=71.19 Aligned_cols=37 Identities=35% Similarity=0.530 Sum_probs=31.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhh---CCCCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKL---LPQSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~---~~g~~v~lie~~~~ 49 (388)
.++|+||||||+|+++|..|++. ..|++|+|||+.+.
T Consensus 8 ~~dVlIVGaGpaGL~lA~~La~~~~~~~Gi~v~viE~~~~ 47 (665)
T 1pn0_A 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRST 47 (665)
T ss_dssp EEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHhccccccCCCCEEEEeCCCC
Confidence 47999999999999999999982 14899999998754
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00061 Score=69.41 Aligned_cols=37 Identities=16% Similarity=0.326 Sum_probs=31.6
Q ss_pred CCcEEEECccHHHHHHHHHHHhh----CCCCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKL----LPQSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~----~~g~~v~lie~~~~ 49 (388)
.+||+|||||+||++||..|++. .+|.+|+|+|+...
T Consensus 22 ~~DVvVVG~G~AGL~AAl~aa~~~~~~~pG~~V~vleK~~~ 62 (662)
T 3gyx_A 22 SVDLLMVGGGMGNCGAAFEAVRWADKYAPEAKILLVDKASL 62 (662)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHHCTTCCEEEECSSCT
T ss_pred EcCEEEECCCHHHHHHHHHHHhhccccCCCCcEEEEEecCC
Confidence 37999999999999999999982 12999999998753
|
| >2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.011 Score=56.13 Aligned_cols=58 Identities=16% Similarity=0.186 Sum_probs=38.3
Q ss_pred hhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 249 RKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+..+...|...+. ++.+++++.++++..++ +.+ .+++ .+++++.+|.||.|.|.....
T Consensus 127 r~~l~~~L~~~~~----------~~~i~~~~~v~~i~~~~-~~v-~v~~--------~~g~~~~ad~vV~AdG~~S~v 184 (398)
T 2xdo_A 127 RNDLRAILLNSLE----------NDTVIWDRKLVMLEPGK-KKW-TLTF--------ENKPSETADLVILANGGMSKV 184 (398)
T ss_dssp HHHHHHHHHHTSC----------TTSEEESCCEEEEEECS-SSE-EEEE--------TTSCCEEESEEEECSCTTCSC
T ss_pred HHHHHHHHHhhcC----------CCEEEECCEEEEEEECC-CEE-EEEE--------CCCcEEecCEEEECCCcchhH
Confidence 4455556655431 24678899999998654 333 2433 334578999999999988654
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00082 Score=70.53 Aligned_cols=36 Identities=19% Similarity=0.462 Sum_probs=32.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~~~ 49 (388)
..++|+|||||++|+++|..|++ .|. +|+|+|+...
T Consensus 3 ~~~dVvIIGgGi~Gls~A~~La~--~G~~~V~vlE~~~~ 39 (830)
T 1pj5_A 3 STPRIVIIGAGIVGTNLADELVT--RGWNNITVLDQGPL 39 (830)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHH--TTCCCEEEECSSCT
T ss_pred CCCCEEEECcCHHHHHHHHHHHh--CCCCcEEEEeCCCC
Confidence 35799999999999999999999 898 9999999865
|
| >1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0074 Score=60.43 Aligned_cols=51 Identities=10% Similarity=0.042 Sum_probs=37.6
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQS 324 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p 324 (388)
+.||++++++.++++..++++++.++.+.+. .++..++.+|.||+|+|-.+
T Consensus 267 ~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~----~G~~~~i~A~~VVlAtGg~~ 317 (572)
T 1d4d_A 267 KRGTDIRLNSRVVRILEDASGKVTGVLVKGE----YTGYYVIKADAVVIAAGGFA 317 (572)
T ss_dssp HTTCEEESSEEEEEEEEC--CCEEEEEEEET----TTEEEEEECSEEEECCCCCT
T ss_pred HcCCeEEecCEEEEEEECCCCeEEEEEEEeC----CCcEEEEEcCEEEEeCCCCc
Confidence 4689999999999997653378888876421 23335799999999999654
|
| >3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0017 Score=65.30 Aligned_cols=50 Identities=10% Similarity=0.025 Sum_probs=37.1
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
+.|+++++++.++++..+ ++.+..+.+.+ .+...++.||.||.|+|....
T Consensus 140 ~~Gv~i~~g~~V~~v~~~-~g~~~~V~~~~-----~G~~~~i~AdlVV~AdG~~S~ 189 (591)
T 3i3l_A 140 SRGITVHEETPVTDVDLS-DPDRVVLTVRR-----GGESVTVESDFVIDAGGSGGP 189 (591)
T ss_dssp HTTCEEETTCCEEEEECC-STTCEEEEEEE-----TTEEEEEEESEEEECCGGGCH
T ss_pred hCCCEEEeCCEEEEEEEc-CCCEEEEEEec-----CCceEEEEcCEEEECCCCcch
Confidence 468999999999999864 35556665531 233368999999999998763
|
| >1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0057 Score=60.79 Aligned_cols=44 Identities=9% Similarity=0.022 Sum_probs=29.8
Q ss_pred eEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccC
Q psy4525 272 YFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 272 gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
+..+++++.++++..++++..-.+++ .+++++.||.||+|+|..
T Consensus 110 ~~~i~~~~~V~~~~~~~~~~~w~V~~--------~~G~~~~ad~vV~AtG~~ 153 (542)
T 1w4x_A 110 RSGITFHTTVTAAAFDEATNTWTVDT--------NHGDRIRARYLIMASGQL 153 (542)
T ss_dssp GGGEECSCCEEEEEEETTTTEEEEEE--------TTCCEEEEEEEEECCCSC
T ss_pred CceEEcCcEEEEEEEcCCCCeEEEEE--------CCCCEEEeCEEEECcCCC
Confidence 35677888888887644332223432 345679999999999964
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0053 Score=62.81 Aligned_cols=60 Identities=12% Similarity=0.108 Sum_probs=39.8
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC--CCCcccCCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD--SDIPFNEKSCT 339 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~--~~l~~~~~~gi 339 (388)
+.|+++++++.++++..++ +.+ .++ +.++.++.||.||+|+|.....+. .++++...+|.
T Consensus 429 ~~Gv~i~~~t~V~~l~~~~-~~v-~V~--------t~~G~~i~Ad~VVlAtG~~s~~l~~~~~lpl~p~rGq 490 (676)
T 3ps9_A 429 QQGLQIYYQYQLQNFSRKD-DCW-LLN--------FAGDQQATHSVVVLANGHQISRFSQTSTLPVYSVAGQ 490 (676)
T ss_dssp HTTCEEEESCCEEEEEEET-TEE-EEE--------ETTSCEEEESEEEECCGGGGGCSTTTTTCSCEEEEEE
T ss_pred hCCCEEEeCCeeeEEEEeC-CeE-EEE--------ECCCCEEECCEEEECCCcchhccccccCCcceeecCE
Confidence 4689999999999998654 333 343 334457999999999998755432 23444433343
|
| >3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0028 Score=63.47 Aligned_cols=136 Identities=13% Similarity=0.082 Sum_probs=74.1
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccc-----cCCHHHHHHHhcCC---
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQV-----AFTIKEFREMTKLP--- 224 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~-----~~~~~el~~l~~~~--- 224 (388)
-+|+|||+|.+|+-+|..|+ +.|. +|++++|...... .+.+.-++-+..+-
T Consensus 50 ~DVvIVGaG~aGL~~A~~La--------------------~~G~-~V~VlEr~~~~~~~~r~~~l~~~s~~~l~~lGl~~ 108 (570)
T 3fmw_A 50 TDVVVVGGGPVGLMLAGELR--------------------AGGV-GALVLEKLVEPVGHDRAGALHIRTVETLDLRGLLD 108 (570)
T ss_dssp -CEEEECCSHHHHHHHHHHH--------------------HTTC-CEEEEBSCSSCCCSSSCCCBCHHHHHHHHTTTCHH
T ss_pred CCEEEECcCHHHHHHHHHHH--------------------HCCC-CEEEEcCCCCCCCCceEEEECHHHHHHHHHcCChH
Confidence 47999999999999999886 3554 6999998764321 12222222111110
Q ss_pred -----Cc---eEEeccc---cc--ccchh-hhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCC
Q psy4525 225 -----HV---QTVFRNE---QL--CGVHE-ASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNG 290 (388)
Q Consensus 225 -----~~---~~~~~~~---~~--~~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~ 290 (388)
.. ...+... .+ ..+.. .+....-.+..+...|...+. +.|+++++++.++.+..++++
T Consensus 109 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~a~--------~~gv~i~~~~~v~~l~~~~~~ 180 (570)
T 3fmw_A 109 RFLEGTQVAKGLPFAGIFTQGLDFGLVDTRHPYTGLVPQSRTEALLAEHAR--------EAGAEIPRGHEVTRLRQDAEA 180 (570)
T ss_dssp HHTTSCCBCSBCCBTTBCTTCCBGGGSCCSCCSBBCCCHHHHHHHHHHHHH--------HHTEECCBSCEEEECCBCSSC
T ss_pred HHHhcCcccCCceeCCcccccccccccCCCCCeeEEeCHHHHHHHHHHHHH--------hCCCEEEeCCEEEEEEEcCCe
Confidence 00 0000000 00 00000 000111124445555544432 458999999999999875433
Q ss_pred ceeEEEEccCccccCCce-eEEecceEEEccccCCc
Q psy4525 291 AITGINFANQQALVTEDT-ELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 291 ~v~~v~~~~~~~~~~~~~-~~l~~D~Vi~a~G~~p~ 325 (388)
+. +.+. ..++ +++.||.||.|.|....
T Consensus 181 -v~-v~~~------~~~G~~~~~a~~vV~ADG~~S~ 208 (570)
T 3fmw_A 181 -VE-VTVA------GPSGPYPVRARYGVGCDGGRST 208 (570)
T ss_dssp -EE-EEEE------ETTEEEEEEESEEEECSCSSCH
T ss_pred -EE-EEEE------eCCCcEEEEeCEEEEcCCCCch
Confidence 22 3331 1344 68999999999998753
|
| >1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00098 Score=67.82 Aligned_cols=35 Identities=26% Similarity=0.320 Sum_probs=31.3
Q ss_pred CCcEEEECccHHHHHHHHHHH----hhCCCCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQIL----KLLPQSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~----~~~~g~~v~lie~~~~ 49 (388)
.+||+|||||+||++||..++ + .|.+|+|+|+.+.
T Consensus 22 ~~DVvVIG~G~AGl~AAl~aa~~~~~--~G~~V~vlEK~~~ 60 (643)
T 1jnr_A 22 ETDILIIGGGFSGCGAAYEAAYWAKL--GGLKVTLVEKAAV 60 (643)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTT--TTCCEEEECSSCT
T ss_pred cCCEEEECcCHHHHHHHHHHhhhhhh--CCCeEEEEeCcCC
Confidence 479999999999999999999 3 5899999999864
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0028 Score=62.74 Aligned_cols=84 Identities=17% Similarity=0.162 Sum_probs=59.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcC-CCcEEEceEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDN-PRVNFYGNICLG 90 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~-~~i~~~~~~~v~ 90 (388)
..++|+|||+|+.|+.+|..|++ .+.+|+++++.+.+. +. ..+.+.+.+ .|++++.++.+.
T Consensus 354 ~~k~V~ViGgG~~g~E~A~~L~~--~g~~Vtlv~~~~~l~--------~~--------~~l~~~l~~~~gV~v~~~~~v~ 415 (521)
T 1hyu_A 354 KGKRVAVIGGGNSGVEAAIDLAG--IVEHVTLLEFAPEMK--------AD--------QVLQDKVRSLKNVDIILNAQTT 415 (521)
T ss_dssp BTSEEEEECCSHHHHHHHHHHHH--HBSEEEEECSSSSCC--------SC--------HHHHHHHTTCTTEEEECSEEEE
T ss_pred CCCeEEEECCCHHHHHHHHHHHh--hCCEEEEEEeCcccC--------cC--------HHHHHHHhcCCCcEEEeCCEEE
Confidence 35799999999999999999999 789999999876532 11 123344555 589998876653
Q ss_pred EE---------eeecc---c---ccccCEEEEeeCCCC
Q psy4525 91 QD---------ISLGD---L---TNAYHAVVLTYGADN 113 (388)
Q Consensus 91 ~~---------~~~~~---~---~~~yd~lvlAtG~~~ 113 (388)
.. +...+ + ...+|.|++|+|..|
T Consensus 416 ~i~~~~~~v~~v~~~~~~~g~~~~i~~D~vi~a~G~~p 453 (521)
T 1hyu_A 416 EVKGDGSKVVGLEYRDRVSGDIHSVALAGIFVQIGLLP 453 (521)
T ss_dssp EEEECSSSEEEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred EEEcCCCcEEEEEEEeCCCCceEEEEcCEEEECcCCCC
Confidence 21 22221 2 236899999999765
|
| >3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0078 Score=57.85 Aligned_cols=48 Identities=10% Similarity=0.063 Sum_probs=37.0
Q ss_pred ceeEEEEecC---cceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLR---SPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~---~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.|+++++++ .++++..+ ++.+.+++. .+++++.||.||+|+|.....
T Consensus 173 ~~Gv~i~~~t~~~~V~~i~~~-~~~v~gV~t--------~~G~~i~Ad~VV~AtG~~s~~ 223 (438)
T 3dje_A 173 RMGVKFVTGTPQGRVVTLIFE-NNDVKGAVT--------ADGKIWRAERTFLCAGASAGQ 223 (438)
T ss_dssp HTTCEEEESTTTTCEEEEEEE-TTEEEEEEE--------TTTEEEECSEEEECCGGGGGG
T ss_pred hcCCEEEeCCcCceEEEEEec-CCeEEEEEE--------CCCCEEECCEEEECCCCChhh
Confidence 5689999999 99999764 456766654 445689999999999976543
|
| >4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0027 Score=58.05 Aligned_cols=37 Identities=14% Similarity=0.146 Sum_probs=33.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
.+++|+|||||+.|+.+|..|++ .+.+|+++++.+.+
T Consensus 144 ~~k~vvViGgG~ig~E~A~~l~~--~g~~Vtlv~~~~~~ 180 (312)
T 4gcm_A 144 KNKRLFVIGGGDSAVEEGTFLTK--FADKVTIVHRRDEL 180 (312)
T ss_dssp TTCEEEEECCSHHHHHHHHHHTT--TCSEEEEECSSSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--cCCEEEEEeccccc
Confidence 35799999999999999999999 89999999988654
|
| >2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0022 Score=60.94 Aligned_cols=46 Identities=17% Similarity=0.031 Sum_probs=34.4
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
+.|+++++++.++++..+ ++.+..++. .++ ++.+|.||+|+|...+
T Consensus 186 ~~g~~i~~~~~v~~i~~~-~~~~~~v~~--------~~g-~~~a~~vV~a~G~~s~ 231 (405)
T 2gag_B 186 EMGVDIIQNCEVTGFIKD-GEKVTGVKT--------TRG-TIHAGKVALAGAGHSS 231 (405)
T ss_dssp HTTCEEECSCCEEEEEES-SSBEEEEEE--------TTC-CEEEEEEEECCGGGHH
T ss_pred HCCCEEEcCCeEEEEEEe-CCEEEEEEe--------CCc-eEECCEEEECCchhHH
Confidence 468999999999999864 355555543 233 6899999999998653
|
| >2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0084 Score=59.69 Aligned_cols=48 Identities=13% Similarity=0.173 Sum_probs=37.2
Q ss_pred ce-eEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SK-YFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~-gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+. |++++++ .++++..++++.+..+.+ .+++++.||.||.|+|..+..
T Consensus 206 ~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~--------~~G~~i~ad~vI~A~G~~S~~ 254 (550)
T 2e4g_A 206 EKLGVRHVED-RVEHVQRDANGNIESVRT--------ATGRVFDADLFVDCSGFRGLL 254 (550)
T ss_dssp HHSCCEEEEC-CEEEEEECTTSCEEEEEE--------TTSCEEECSEEEECCGGGCCC
T ss_pred hcCCcEEEEC-eEeEEEEcCCCCEEEEEE--------CCCCEEECCEEEECCCCchhh
Confidence 45 8999999 999998655566666654 334579999999999997755
|
| >2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0074 Score=59.91 Aligned_cols=48 Identities=10% Similarity=0.205 Sum_probs=36.5
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.|+.++++ .++++..++++.+..+.+ .+++++.||.||.|+|.....
T Consensus 177 ~~gv~~~~~-~v~~i~~~~~g~~~~v~~--------~~g~~i~ad~vV~A~G~~s~~ 224 (538)
T 2aqj_A 177 ERGVNRVVD-EVVDVRLNNRGYISNLLT--------KEGRTLEADLFIDCSGMRGLL 224 (538)
T ss_dssp HTTCEEEEC-CEEEEEECTTSCEEEEEE--------TTSCEECCSEEEECCGGGCCC
T ss_pred HCCCEEEEe-eEeEEEEcCCCcEEEEEE--------CCCcEEEeCEEEECCCCchhh
Confidence 458999998 899988755566666654 234579999999999998765
|
| >1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0011 Score=66.11 Aligned_cols=37 Identities=24% Similarity=0.352 Sum_probs=33.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
...+|++|||+|++|+.+|.+|.+ .+.+|+|+|+.+.
T Consensus 5 ~~~~D~iIvG~G~aG~~~A~~L~~--~g~~VlvlE~g~~ 41 (546)
T 1kdg_A 5 ATPYDYIIVGAGPGGIIAADRLSE--AGKKVLLLERGGP 41 (546)
T ss_dssp -CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSCC
T ss_pred CCceeEEEECcCHHHHHHHHHHHh--CCCeEEEEeCCCC
Confidence 346899999999999999999999 8999999999864
|
| >1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ... | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0037 Score=59.26 Aligned_cols=51 Identities=4% Similarity=0.004 Sum_probs=34.5
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.|+++++++.++++..++++.+ .+.+.. .++..++.+|.||.|.|.....
T Consensus 115 ~~g~~i~~~~~v~~i~~~~~~~~-~v~~~~-----~g~~~~~~a~~vV~AdG~~S~v 165 (394)
T 1k0i_A 115 ACGATTVYQAAEVRLHDLQGERP-YVTFER-----DGERLRLDCDYIAGCDGFHGIS 165 (394)
T ss_dssp HTTCEEESSCEEEEEECTTSSSC-EEEEEE-----TTEEEEEECSEEEECCCTTCST
T ss_pred hcCCeEEeceeEEEEEEecCCce-EEEEec-----CCcEEEEEeCEEEECCCCCcHH
Confidence 35899999999999976432322 344310 1222379999999999988654
|
| >3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.001 Score=65.85 Aligned_cols=37 Identities=30% Similarity=0.333 Sum_probs=32.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
+.+|+||||+|+||+.+|.+|.+. ++.+|+|+|+.+.
T Consensus 16 ~~yD~IIVGsG~aG~v~A~rLse~-~~~~VLvLEaG~~ 52 (526)
T 3t37_A 16 PNCDIVIVGGGSAGSLLAARLSED-PDSRVLLIEAGEE 52 (526)
T ss_dssp -CEEEEEECCSHHHHHHHHHHTTS-TTSCEEEECSSBC
T ss_pred CCeeEEEECccHHHHHHHHHHHhC-CCCeEEEEcCCCC
Confidence 468999999999999999999863 6789999998854
|
| >3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=96.72 E-value=0.0083 Score=55.78 Aligned_cols=55 Identities=9% Similarity=0.108 Sum_probs=37.8
Q ss_pred eeEEEEecCcceeeeeCCC----------------C--ceeEEEEcc------CccccCCceeEEecceEEEccccCCc
Q psy4525 271 KYFRPIFLRSPTEFKLNDN----------------G--AITGINFAN------QQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~----------------~--~v~~v~~~~------~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
.++++++++.++++..+++ + ++.++.... +......+..++.|+.||.|||....
T Consensus 174 ~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~Ak~VV~ATG~~s~ 252 (344)
T 3jsk_A 174 PNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTINAPVIISTTGHDGP 252 (344)
T ss_dssp TTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEECSEEEECCCSSSS
T ss_pred CCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEEEcCEEEECCCCCch
Confidence 5899999999988875431 2 677776531 11111124578999999999998764
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0033 Score=64.24 Aligned_cols=92 Identities=16% Similarity=0.147 Sum_probs=57.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCc-------------------------------------EEEEcCCCCCCCce
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQST-------------------------------------VDIYEKLPVPFGLV 54 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~-------------------------------------v~lie~~~~~gg~~ 54 (388)
..++|+|||||+.|+.+|..|.+ .|.+ |+++++.+..-
T Consensus 493 ~~~~VvVIGgG~~g~E~A~~l~~--~G~~vtv~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~l--- 567 (671)
T 1ps9_A 493 VGNKVAIIGCGGIGFDTAMYLSQ--PGESTSQNIAGFCNEWGIDSSLQQAGGLSPQGMQIPRSPRQIVMLQRKASKP--- 567 (671)
T ss_dssp CCSEEEEECCHHHHHHHHHHHTC--CSSCGGGCHHHHHHHTTBCTTCCSGGGBCTTCCCCCCCSSEEEEECSSCSCT---
T ss_pred CCCeEEEECCChhHHHHHHHHHh--cCCCcccchhhhhhhhcccccccccccccccccccCCCCcEEEEEEecchhh---
Confidence 46899999999999999999997 5543 33444332110
Q ss_pred eeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEEE----eee-ccc---ccccCEEEEeeCCCCC
Q psy4525 55 RYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQD----ISL-GDL---TNAYHAVVLTYGADND 114 (388)
Q Consensus 55 ~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~----~~~-~~~---~~~yd~lvlAtG~~~~ 114 (388)
. ..........+.+.+++.|++++.++.+... +.+ .++ ...+|.||+|+|..+.
T Consensus 568 -----~-~~l~~~~~~~~~~~l~~~GV~v~~~~~v~~i~~~~v~~~~~G~~~~i~~D~Vi~a~G~~p~ 629 (671)
T 1ps9_A 568 -----G-QGLGKTTGWIHRTTLLSRGVKMIPGVSYQKIDDDGLHVVINGETQVLAVDNVVICAGQEPN 629 (671)
T ss_dssp -----T-TTSCTTTHHHHHHHHHHTTCEEECSCEEEEEETTEEEEEETTEEEEECCSEEEECCCEEEC
T ss_pred -----c-cccccccHHHHHHHHHhcCCEEEeCcEEEEEeCCeEEEecCCeEEEEeCCEEEECCCcccc
Confidence 0 0011122333455566789999988765321 222 222 2379999999997763
|
| >2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0044 Score=57.26 Aligned_cols=55 Identities=11% Similarity=0.175 Sum_probs=35.6
Q ss_pred eeEEEEecCcceeeeeCC--C-C--ceeEEEEccC------ccccCCceeEEec---------------ceEEEccccCC
Q psy4525 271 KYFRPIFLRSPTEFKLND--N-G--AITGINFANQ------QALVTEDTELIPS---------------GIAFRSIGYQS 324 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~--~-~--~v~~v~~~~~------~~~~~~~~~~l~~---------------D~Vi~a~G~~p 324 (388)
.|+++++++.++++..++ + + +|.++..... ......+..++.| |.||.|||..+
T Consensus 160 ~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~~~~~~VV~ATG~~~ 239 (326)
T 2gjc_A 160 PNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTGHDG 239 (326)
T ss_dssp TTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCSSTTCCEEEECCCCC-
T ss_pred cCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeeccccccccccccCCEEEECcCCCc
Confidence 589999999999998753 3 4 8888876411 0011224567888 88888888765
Q ss_pred c
Q psy4525 325 R 325 (388)
Q Consensus 325 ~ 325 (388)
.
T Consensus 240 ~ 240 (326)
T 2gjc_A 240 P 240 (326)
T ss_dssp -
T ss_pred h
Confidence 3
|
| >4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0093 Score=56.41 Aligned_cols=43 Identities=19% Similarity=0.224 Sum_probs=31.1
Q ss_pred EEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 274 RPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 274 ~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
.++++..++.+...+++.+ .+.+ .+|+++.||+||-|-|.+..
T Consensus 125 ~v~~~~~v~~~~~~~~~~v-~v~~--------~dG~~~~adlvVgADG~~S~ 167 (412)
T 4hb9_A 125 TIQWNKTFVRYEHIENGGI-KIFF--------ADGSHENVDVLVGADGSNSK 167 (412)
T ss_dssp TEECSCCEEEEEECTTSCE-EEEE--------TTSCEEEESEEEECCCTTCH
T ss_pred eEEEEEEEEeeeEcCCCeE-EEEE--------CCCCEEEeeEEEECCCCCcc
Confidence 3678899998876555544 3443 45568999999999998753
|
| >2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.0027 Score=61.72 Aligned_cols=37 Identities=16% Similarity=0.337 Sum_probs=32.2
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCc-EEEEcCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQST-VDIYEKLPV 49 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~-v~lie~~~~ 49 (388)
...++|+|||||..|+.+|..+.+ .|.+ |+++++.+.
T Consensus 262 ~~gk~VvVIGgG~~a~d~A~~~~r--~Ga~~Vtiv~r~~~ 299 (456)
T 2vdc_G 262 AAGKHVVVLGGGDTAMDCVRTAIR--QGATSVKCLYRRDR 299 (456)
T ss_dssp CCCSEEEEECSSHHHHHHHHHHHH--TTCSEEEEECSSCS
T ss_pred cCCCEEEEECCChhHHHHHHHHHH--cCCCEEEEEEeCCc
Confidence 346899999999999999999998 7874 999998754
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.009 Score=58.08 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=31.1
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
.++|+|+|+|-.|.+.|..|.. .|.+|+++|+++
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~--~~~~v~vId~d~ 36 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVG--ENNDITIVDKDG 36 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCS--TTEEEEEEESCH
T ss_pred cCEEEEECCCHHHHHHHHHHHH--CCCCEEEEECCH
Confidence 4589999999999999999998 899999999864
|
| >3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0086 Score=59.34 Aligned_cols=64 Identities=16% Similarity=0.145 Sum_probs=41.9
Q ss_pred hhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCce--eEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 249 RKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAI--TGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v--~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
+..+...|.+.+. +.|+++++++.++.+..++++.+ ..+.+.++ +...++.||.||.|.|....
T Consensus 119 ~~~l~~~L~~~a~--------~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~-----~~~~~i~a~~vV~AdG~~S~ 184 (535)
T 3ihg_A 119 QDKLEPILLAQAR--------KHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGP-----DGEYDLRAGYLVGADGNRSL 184 (535)
T ss_dssp HHHHHHHHHHHHH--------HTTCEEESSCEEEEEEEECGGGCSEEEEEEEET-----TEEEEEEEEEEEECCCTTCH
T ss_pred HHHHHHHHHHHHH--------hCCCEEEeCCEEEEEEECCCCccccEEEEEEcC-----CCeEEEEeCEEEECCCCcch
Confidence 4555555555442 45899999999999987544222 22333221 11468999999999998763
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0018 Score=66.83 Aligned_cols=91 Identities=13% Similarity=0.090 Sum_probs=61.6
Q ss_pred CCCcEEEEC--ccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEE
Q psy4525 12 LKPNVCIVG--SGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICL 89 (388)
Q Consensus 12 ~~~~vvIIG--aG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v 89 (388)
..++|+||| +|+.|+.+|..|++ .|.+|+++++.+ +.... .. +. . ...+.+.+++.|++++.++.+
T Consensus 527 ~gk~VvVIG~GgG~~g~e~A~~l~~--~G~~Vtlv~~~~-l~~~~--~~-~~--~----~~~~~~~l~~~GV~i~~~~~v 594 (729)
T 1o94_A 527 IGKRVVILNADTYFMAPSLAEKLAT--AGHEVTIVSGVH-LANYM--HF-TL--E----YPNMMRRLHELHVEELGDHFC 594 (729)
T ss_dssp CCSEEEEEECCCSSHHHHHHHHHHH--TTCEEEEEESSC-TTHHH--HH-TT--C----HHHHHHHHHHTTCEEECSEEE
T ss_pred CCCeEEEEcCCCCchHHHHHHHHHH--cCCEEEEEeccc-ccccc--cc-cc--c----HHHHHHHHHhCCCEEEcCcEE
Confidence 457999999 99999999999999 899999999886 42110 00 11 1 233445566679999988765
Q ss_pred EEE------eee---cc-cc------------------cccCEEEEeeCCCCC
Q psy4525 90 GQD------ISL---GD-LT------------------NAYHAVVLTYGADND 114 (388)
Q Consensus 90 ~~~------~~~---~~-~~------------------~~yd~lvlAtG~~~~ 114 (388)
... +.. +. .. ..+|.||+|+|..+.
T Consensus 595 ~~i~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~aD~Vv~a~G~~p~ 647 (729)
T 1o94_A 595 SRIEPGRMEIYNIWGDGSKRTYRGPGVSPRDANTSHRWIEFDSLVLVTGRHSE 647 (729)
T ss_dssp EEEETTEEEEEETTCSCSCCCCCCTTSCSSCCCCCCEEEECSEEEEESCEEEC
T ss_pred EEEECCeEEEEEecCCceEEecccccccccccCCcceeeeCCEEEECCCCCCC
Confidence 321 111 11 11 468999999997663
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.011 Score=60.53 Aligned_cols=60 Identities=7% Similarity=0.041 Sum_probs=39.5
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCcee-EEecceEEEccccCCccCC--CCCcccCCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTE-LIPSGIAFRSIGYQSRCVD--SDIPFNEKSCT 339 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~-~l~~D~Vi~a~G~~p~~~~--~~l~~~~~~gi 339 (388)
+.|+++++++.++++..+++ .+ .++ +.++. ++.||.||+|+|.....+. .++++...+|.
T Consensus 424 ~~Gv~i~~~t~V~~l~~~~~-~v-~V~--------t~~G~~~i~Ad~VVlAtG~~s~~l~~~~~lpl~p~rGq 486 (689)
T 3pvc_A 424 QNGMTCHYQHELQRLKRIDS-QW-QLT--------FGQSQAAKHHATVILATGHRLPEWEQTHHLPLSAVRGQ 486 (689)
T ss_dssp HTTCEEEESCCEEEEEECSS-SE-EEE--------EC-CCCCEEESEEEECCGGGTTCSTTTTTSCCEEEEEE
T ss_pred hCCCEEEeCCeEeEEEEeCC-eE-EEE--------eCCCcEEEECCEEEECCCcchhccccccCCccccccCc
Confidence 46899999999999987643 33 333 33444 6899999999998755432 23444433443
|
| >1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.015 Score=54.58 Aligned_cols=46 Identities=13% Similarity=0.210 Sum_probs=35.0
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
+.|+++++++.++++..++ +.+.+++. .++ ++.||.||+|+|....
T Consensus 161 ~~Gv~i~~~~~v~~i~~~~-~~v~gv~~--------~~g-~i~a~~VV~A~G~~s~ 206 (382)
T 1y56_B 161 EYGAKLLEYTEVKGFLIEN-NEIKGVKT--------NKG-IIKTGIVVNATNAWAN 206 (382)
T ss_dssp HTTCEEECSCCEEEEEESS-SBEEEEEE--------TTE-EEECSEEEECCGGGHH
T ss_pred HCCCEEECCceEEEEEEEC-CEEEEEEE--------CCc-EEECCEEEECcchhHH
Confidence 5689999999999998653 55655543 334 6999999999998653
|
| >2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.014 Score=57.33 Aligned_cols=138 Identities=9% Similarity=0.061 Sum_probs=76.8
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCccccc-----CCHHHHHHHhcCCC-
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVA-----FTIKEFREMTKLPH- 225 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~-----~~~~el~~l~~~~~- 225 (388)
..+|+|||+|.+|+-+|..|+ +.|. +|+++.|.+..... +.+.-++-+..+-.
T Consensus 12 ~~dVlIVGaGpaGl~~A~~La--------------------~~G~-~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~lGl~ 70 (499)
T 2qa2_A 12 DASVIVVGAGPAGLMLAGELR--------------------LGGV-DVMVLEQLPQRTGESRGLGFTARTMEVFDQRGIL 70 (499)
T ss_dssp CEEEEEECCSHHHHHHHHHHH--------------------HTTC-CEEEEESCSSCCCCCCSEEECHHHHHHHHHTTCG
T ss_pred CCCEEEECcCHHHHHHHHHHH--------------------HCCC-CEEEEECCCCCCCCCceeEECHHHHHHHHHCCCH
Confidence 458999999999999999886 3554 59999987543221 22222222211100
Q ss_pred --c------e-EEecccccc--cchh-hhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCcee
Q psy4525 226 --V------Q-TVFRNEQLC--GVHE-ASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAIT 293 (388)
Q Consensus 226 --~------~-~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~ 293 (388)
+ . ..+....++ .+.. .+....-.+..+.+.|...+. +.|+++++++.++.+..+++ .+.
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~--------~~gv~v~~~~~v~~i~~~~~-~v~ 141 (499)
T 2qa2_A 71 PAFGPVETSTQGHFGGRPVDFGVLEGAHYGVKAVPQSTTESVLEEWAL--------GRGAELLRGHTVRALTDEGD-HVV 141 (499)
T ss_dssp GGGCSCCEESEEEETTEEEEGGGSTTCCCEEEEEEHHHHHHHHHHHHH--------HTTCEEEESCEEEEEEECSS-CEE
T ss_pred HHHHhccccccceecceecccccCCCCCCceEecCHHHHHHHHHHHHH--------hCCCEEEcCCEEEEEEEeCC-EEE
Confidence 0 0 000000000 0000 000111124555566655432 35799999999999987553 333
Q ss_pred EEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 294 GINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 294 ~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
+.+.++ ++ .+++.||.||.|.|.+..
T Consensus 142 -v~~~~~----~g-~~~~~a~~vVgADG~~S~ 167 (499)
T 2qa2_A 142 -VEVEGP----DG-PRSLTTRYVVGCDGGRST 167 (499)
T ss_dssp -EEEECS----SC-EEEEEEEEEEECCCTTCH
T ss_pred -EEEEcC----CC-cEEEEeCEEEEccCcccH
Confidence 444332 12 357999999999998754
|
| >2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0019 Score=64.37 Aligned_cols=49 Identities=24% Similarity=0.285 Sum_probs=38.2
Q ss_pred CccccccccCCCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 1 MMKRVYSTISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 1 ~~~~~~~~~~~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
||...++......+|++|||+|++|+.+|..|.+. ++.+|+++|+....
T Consensus 1 ~~~~~~~~~~~~~~d~~ivG~G~~G~~~a~~l~~~-~~~~v~~~e~g~~~ 49 (546)
T 2jbv_A 1 MHIDNIENLSDREFDYIVVGGGSAGAAVAARLSED-PAVSVALVEAGPDD 49 (546)
T ss_dssp CEESCGGGCCCCEEEEEEECCSHHHHHHHHHHTTS-TTSCEEEECSSCCC
T ss_pred CccccccccccCcCCEEEECcCHHHHHHHHHHHhC-CCCCEEEEecCCcC
Confidence 45544444433568999999999999999999982 38999999998553
|
| >3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0095 Score=56.80 Aligned_cols=48 Identities=8% Similarity=-0.048 Sum_probs=31.4
Q ss_pred EEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 273 FRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 273 v~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.+++++.++++.. +++ +. +.+.+. ..++.+++.||.||.|.|.....
T Consensus 124 ~~v~~~~~v~~i~~-~~~-v~-v~~~~~---~~g~~~~~~ad~vV~AdG~~S~v 171 (410)
T 3c96_A 124 QAVRTGLGVERIEE-RDG-RV-LIGARD---GHGKPQALGADVLVGADGIHSAV 171 (410)
T ss_dssp TSEEESEEEEEEEE-ETT-EE-EEEEEE---TTSCEEEEEESEEEECCCTTCHH
T ss_pred cEEEECCEEEEEec-CCc-cE-EEEecC---CCCCceEEecCEEEECCCccchh
Confidence 57889999998876 333 32 333210 01233679999999999987643
|
| >1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.013 Score=54.99 Aligned_cols=45 Identities=11% Similarity=-0.127 Sum_probs=33.7
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
+.|+++++++.++++..++ +.+ .+. +.++ ++.||.||+|+|....
T Consensus 176 ~~g~~i~~~~~v~~i~~~~-~~~-~v~--------~~~g-~~~a~~vV~A~G~~s~ 220 (382)
T 1ryi_A 176 MLGAEIFEHTPVLHVERDG-EAL-FIK--------TPSG-DVWANHVVVASGVWSG 220 (382)
T ss_dssp HTTCEEETTCCCCEEECSS-SSE-EEE--------ETTE-EEEEEEEEECCGGGTH
T ss_pred HCCCEEEcCCcEEEEEEEC-CEE-EEE--------cCCc-eEEcCEEEECCChhHH
Confidence 4689999999999997643 444 443 2334 7999999999998654
|
| >2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.015 Score=57.21 Aligned_cols=137 Identities=11% Similarity=0.040 Sum_probs=76.0
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCccccc-----CCHHHHHHHhcCCCc
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVA-----FTIKEFREMTKLPHV 226 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~-----~~~~el~~l~~~~~~ 226 (388)
..+|+|||+|.+|+-+|..|+ +.|. +|++++|.+..... +.+.-++-+..+ ++
T Consensus 11 ~~dVlIVGaGpaGl~~A~~La--------------------~~G~-~v~vlE~~~~~~~~~r~~~l~~~~~~~l~~l-Gl 68 (500)
T 2qa1_A 11 DAAVIVVGAGPAGMMLAGELR--------------------LAGV-EVVVLERLVERTGESRGLGFTARTMEVFDQR-GI 68 (500)
T ss_dssp BCSEEEECCSHHHHHHHHHHH--------------------HTTC-CEEEEESCCC-CCCCCSEEECHHHHHHHHTT-TC
T ss_pred CCCEEEECcCHHHHHHHHHHH--------------------HCCC-CEEEEeCCCCCCCCCCcceECHHHHHHHHHC-CC
Confidence 357999999999999999886 3554 59999987643211 223222222211 11
Q ss_pred e-----------EEecccccc--cchh-hhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCce
Q psy4525 227 Q-----------TVFRNEQLC--GVHE-ASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAI 292 (388)
Q Consensus 227 ~-----------~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v 292 (388)
. ..+....+. .+.. .+....-.+..+.+.|...+. +.|+++++++.++.+..+++ .+
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~L~~~~~--------~~gv~v~~~~~v~~i~~~~~-~v 139 (500)
T 2qa1_A 69 LPRFGEVETSTQGHFGGLPIDFGVLEGAWQAAKTVPQSVTETHLEQWAT--------GLGADIRRGHEVLSLTDDGA-GV 139 (500)
T ss_dssp GGGGCSCCBCCEEEETTEEEEGGGSTTGGGCEEEEEHHHHHHHHHHHHH--------HTTCEEEETCEEEEEEEETT-EE
T ss_pred HHHHHhccccccccccceecccccCCCCCCceeecCHHHHHHHHHHHHH--------HCCCEEECCcEEEEEEEcCC-eE
Confidence 0 000000000 0000 000111124555555555432 35799999999999986543 33
Q ss_pred eEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 293 TGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 293 ~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
. +++.++ .+ .+++.+|.||.|.|.+..
T Consensus 140 ~-v~~~~~----~g-~~~~~a~~vVgADG~~S~ 166 (500)
T 2qa1_A 140 T-VEVRGP----EG-KHTLRAAYLVGCDGGRSS 166 (500)
T ss_dssp E-EEEEET----TE-EEEEEESEEEECCCTTCH
T ss_pred E-EEEEcC----CC-CEEEEeCEEEECCCcchH
Confidence 2 444332 12 357999999999998754
|
| >2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0055 Score=57.41 Aligned_cols=58 Identities=16% Similarity=0.155 Sum_probs=37.4
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCCCCCcccCCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVDSDIPFNEKSC 338 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~~~l~~~~~~g 338 (388)
+.|+++++++.++++..+++ .+ .++ +.++ ++.||.||+|+|.....+...+++.+.+|
T Consensus 161 ~~G~~i~~~~~V~~i~~~~~-~~-~v~--------~~~g-~~~a~~vV~a~G~~s~~l~~~l~~~p~rg 218 (372)
T 2uzz_A 161 EAGCAQLFNCPVTAIRHDDD-GV-TIE--------TADG-EYQAKKAIVCAGTWVKDLLPELPVQPVRK 218 (372)
T ss_dssp HTTCEEECSCCEEEEEECSS-SE-EEE--------ESSC-EEEEEEEEECCGGGGGGTSTTCCCEEEEC
T ss_pred HCCCEEEcCCEEEEEEEcCC-EE-EEE--------ECCC-eEEcCEEEEcCCccHHhhccccCceEEEE
Confidence 46899999999999986543 32 232 2333 49999999999976544432344443334
|
| >3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.01 Score=55.61 Aligned_cols=44 Identities=11% Similarity=0.086 Sum_probs=32.3
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQS 324 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p 324 (388)
+.|+++++++.++++..++ +. ..++ +.++ ++.||.||+|+|...
T Consensus 166 ~~Gv~i~~~~~V~~i~~~~-~~-~~V~--------t~~g-~i~a~~VV~A~G~~s 209 (381)
T 3nyc_A 166 RNQGQVLCNHEALEIRRVD-GA-WEVR--------CDAG-SYRAAVLVNAAGAWC 209 (381)
T ss_dssp HTTCEEESSCCCCEEEEET-TE-EEEE--------CSSE-EEEESEEEECCGGGH
T ss_pred HCCCEEEcCCEEEEEEEeC-Ce-EEEE--------eCCC-EEEcCEEEECCChhH
Confidence 4589999999999997643 32 2332 3444 799999999999754
|
| >3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.015 Score=53.89 Aligned_cols=40 Identities=10% Similarity=0.051 Sum_probs=29.4
Q ss_pred eEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccc
Q psy4525 272 YFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIG 321 (388)
Q Consensus 272 gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G 321 (388)
|+++++++.++++..+++ .+. +.. .+++++.+|.||+|+.
T Consensus 123 g~~i~~~~~V~~i~~~~~-~~~-v~~--------~~g~~~~ad~vV~A~p 162 (342)
T 3qj4_A 123 GAEVYFRHRVTQINLRDD-KWE-VSK--------QTGSPEQFDLIVLTMP 162 (342)
T ss_dssp TCEEESSCCEEEEEECSS-SEE-EEE--------SSSCCEEESEEEECSC
T ss_pred CCEEEeCCEEEEEEEcCC-EEE-EEE--------CCCCEEEcCEEEECCC
Confidence 789999999999987543 332 332 3344589999999997
|
| >3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum} | Back alignment and structure |
|---|
Probab=96.41 E-value=0.022 Score=57.38 Aligned_cols=46 Identities=11% Similarity=0.101 Sum_probs=32.5
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
.|+++. ...++.+..+ ++.+.++.. .++.++.||.||+|||..++.
T Consensus 131 ~GV~I~-~~~V~~L~~d-~g~V~GV~t--------~~G~~i~Ad~VVLATG~~s~~ 176 (641)
T 3cp8_A 131 PNIDLL-QDTVIGVSAN-SGKFSSVTV--------RSGRAIQAKAAILACGTFLNG 176 (641)
T ss_dssp TTEEEE-ECCEEEEEEE-TTEEEEEEE--------TTSCEEEEEEEEECCTTCBTC
T ss_pred CCCEEE-eeEEEEEEec-CCEEEEEEE--------CCCcEEEeCEEEECcCCCCCc
Confidence 478884 5578877653 356666654 334589999999999987653
|
| >3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0029 Score=63.34 Aligned_cols=53 Identities=9% Similarity=0.093 Sum_probs=39.8
Q ss_pred CceeEEEEecCcceeeeeCC---CCceeEEEEccCccccCCceeEEecc-eEEEccccCCc
Q psy4525 269 CSKYFRPIFLRSPTEFKLND---NGAITGINFANQQALVTEDTELIPSG-IAFRSIGYQSR 325 (388)
Q Consensus 269 ~~~gv~~~~~~~~~~i~~~~---~~~v~~v~~~~~~~~~~~~~~~l~~D-~Vi~a~G~~p~ 325 (388)
.+.++++++++.++++..+. ++++.+|++.+. .+...++.|. .||+|+|.-..
T Consensus 238 ~r~NL~V~t~a~V~rIl~d~~~~~~ra~GV~~~~~----~G~~~~v~A~kEVILsAGa~~S 294 (583)
T 3qvp_A 238 QRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTH----KGNTHNVYAKHEVLLAAGSAVS 294 (583)
T ss_dssp TCTTEEEECSCEEEEEEEECSSSSCEEEEEEEESS----TTCEEEEEEEEEEEECSCTTTH
T ss_pred cCCCcEEEcCCEEEEEEeccCCCCCEEEEEEEEec----CCcEEEEEECCEEEEeCCccCC
Confidence 36789999999999998753 578899987521 2445677886 79999997643
|
| >1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.013 Score=57.56 Aligned_cols=114 Identities=13% Similarity=0.041 Sum_probs=65.2
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecc
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRN 232 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~ 232 (388)
.+|+|||+|..|+.+|..|+ +. .+|+++.+.+.+--. +..... .+.
T Consensus 109 ~dVvIIGgG~aGl~aA~~L~--------------------~~--~~V~vie~~~~~GG~--------~~~~~~---~~~- 154 (493)
T 1y56_A 109 VDVAIIGGGPAGIGAALELQ--------------------QY--LTVALIEERGWLGGD--------MWLKGI---KQE- 154 (493)
T ss_dssp ESCCEECCSHHHHHHHHHHT--------------------TT--CCEEEECTTSSSSCS--------GGGTCS---EET-
T ss_pred CCEEEECccHHHHHHHHHHH--------------------hc--CCEEEEeCCCCCCCe--------eecccc---ccC-
Confidence 47999999999999999886 23 579999987643111 000000 000
Q ss_pred cccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEe
Q psy4525 233 EQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIP 312 (388)
Q Consensus 233 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~ 312 (388)
.++.....+...+... . ..+++++++..+..+..+. ..+...... .++...+.
T Consensus 155 -----------g~~~~~~~~~~~l~~~--------l-~~~v~~~~~~~v~~i~~~~-~~~~~~~~~------~~~~~~~~ 207 (493)
T 1y56_A 155 -----------GFNKDSRKVVEELVGK--------L-NENTKIYLETSALGVFDKG-EYFLVPVVR------GDKLIEIL 207 (493)
T ss_dssp -----------TTTEEHHHHHHHHHHT--------C-CTTEEEETTEEECCCEECS-SSEEEEEEE------TTEEEEEE
T ss_pred -----------CCCCCHHHHHHHHHHH--------H-hcCCEEEcCCEEEEEEcCC-cEEEEEEec------CCeEEEEE
Confidence 0000111222222221 1 3578888888888877543 222221111 22334799
Q ss_pred cceEEEccccCCccC
Q psy4525 313 SGIAFRSIGYQSRCV 327 (388)
Q Consensus 313 ~D~Vi~a~G~~p~~~ 327 (388)
+|.+|+|||..|..+
T Consensus 208 ~d~lvlAtGa~~~~~ 222 (493)
T 1y56_A 208 AKRVVLATGAIDSTM 222 (493)
T ss_dssp ESCEEECCCEEECCC
T ss_pred CCEEEECCCCCccCC
Confidence 999999999987654
|
| >2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.011 Score=58.52 Aligned_cols=47 Identities=15% Similarity=0.054 Sum_probs=35.4
Q ss_pred eeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 271 KYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
.|++++++ .++++..++++.+..+.+ .++.++.||.||.|+|.....
T Consensus 189 ~Gv~i~~~-~v~~i~~~~~g~~~~v~~--------~~g~~i~ad~vV~AdG~~S~~ 235 (526)
T 2pyx_A 189 LGVTHIRD-HVSQIINNQHGDIEKLIT--------KQNGEISGQLFIDCTGAKSLL 235 (526)
T ss_dssp SCCEEEEC-CEEEEEECTTSCEEEEEE--------SSSCEEECSEEEECSGGGCCC
T ss_pred CCCEEEEe-EEEEEEecCCCcEEEEEE--------CCCCEEEcCEEEECCCcchHH
Confidence 68999999 699987655566656654 233459999999999998755
|
| >1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0039 Score=61.46 Aligned_cols=37 Identities=11% Similarity=-0.002 Sum_probs=33.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
..++++|||+|++|+.+|..|.+ .+.+|+|+|+....
T Consensus 4 ~~~d~~iiG~G~~g~~~a~~l~~--~~~~v~~~e~~~~~ 40 (504)
T 1n4w_A 4 GYVPAVVIGTGYGAAVSALRLGE--AGVQTLMLEMGQLW 40 (504)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSCCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHh--CCCcEEEEeCCCCC
Confidence 34799999999999999999999 89999999998654
|
| >2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.005 Score=65.59 Aligned_cols=80 Identities=5% Similarity=0.062 Sum_probs=58.0
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE-
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ- 91 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~- 91 (388)
.++|+|||+|+.|+.+|..|.+ .|.+|+|+++.+.+. + . .+.+++.|++++.++.+..
T Consensus 284 gk~vvViGgG~~g~E~A~~L~~--~G~~Vtvv~~~~~~~--------~-----~------~~~l~~~GV~v~~~~~v~~i 342 (965)
T 2gag_A 284 GARIAVATTNDSAYELVRELAA--TGGVVAVIDARSSIS--------A-----A------AAQAVADGVQVISGSVVVDT 342 (965)
T ss_dssp CSSEEEEESSTTHHHHHHHHGG--GTCCSEEEESCSSCC--------H-----H------HHHHHHTTCCEEETEEEEEE
T ss_pred CCeEEEEcCCHHHHHHHHHHHH--cCCcEEEEECCCccc--------h-----h------HHHHHhCCeEEEeCCEeEEE
Confidence 4799999999999999999999 799999999885531 1 1 2345567888887765421
Q ss_pred ---------Eeeecc-------c---ccccCEEEEeeCCCC
Q psy4525 92 ---------DISLGD-------L---TNAYHAVVLTYGADN 113 (388)
Q Consensus 92 ---------~~~~~~-------~---~~~yd~lvlAtG~~~ 113 (388)
.+.+.+ + ...+|.||+|+|..|
T Consensus 343 ~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~D~Vv~a~G~~P 383 (965)
T 2gag_A 343 EADENGELSAIVVAELDEARELGGTQRFEADVLAVAGGFNP 383 (965)
T ss_dssp EECTTSCEEEEEEEEECTTCCEEEEEEEECSEEEEECCEEE
T ss_pred eccCCCCEEEEEEEeccccCCCCceEEEEcCEEEECCCcCc
Confidence 122221 2 237999999999766
|
| >1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0056 Score=61.71 Aligned_cols=42 Identities=14% Similarity=0.015 Sum_probs=39.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~ 55 (388)
..+|++|||+|..|..+|..|.+ .|.+|.++|++++.||.|.
T Consensus 7 ~~~D~~i~GtGl~~~~~a~~~~~--~g~~vl~id~~~~~gg~~~ 48 (650)
T 1vg0_A 7 SDFDVIVIGTGLPESIIAAACSR--SGQRVLHVDSRSYYGGNWA 48 (650)
T ss_dssp SBCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCGGGC
T ss_pred CcCCEEEECCcHHHHHHHHHHHh--CCCEEEEEcCCCcccCccc
Confidence 36899999999999999999999 8999999999999999863
|
| >3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0034 Score=62.84 Aligned_cols=36 Identities=31% Similarity=0.219 Sum_probs=32.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCC-CcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQ-STVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g-~~v~lie~~~~ 49 (388)
..+|+||||||.||+.+|.+|.+ .+ .+|+|+|+.+.
T Consensus 5 ~~yDyIVVGgG~AG~v~A~rLse--~~~~~VLllEaG~~ 41 (577)
T 3q9t_A 5 SHFDFVIVGGGTAGNTVAGRLAE--NPNVTVLIVEAGIG 41 (577)
T ss_dssp CEEEEEEESCSHHHHHHHHHHTT--STTSCEEEECSSCS
T ss_pred CcccEEEECCcHHHHHHHHHHHh--CCCCcEEEEecCCC
Confidence 35899999999999999999998 55 79999999854
|
| >3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.014 Score=58.19 Aligned_cols=51 Identities=14% Similarity=0.171 Sum_probs=39.3
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQS 324 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p 324 (388)
+.|+.+++++.++++..+ ++.+.++++.+. .++++.++.||.||.|+|.-.
T Consensus 182 ~~G~~i~~~~~V~~l~~~-~g~v~gV~~~d~---~tg~~~~i~A~~VV~AaG~~s 232 (561)
T 3da1_A 182 ARGAVALNYMKVESFIYD-QGKVVGVVAKDR---LTDTTHTIYAKKVVNAAGPWV 232 (561)
T ss_dssp HTTCEEEESEEEEEEEEE-TTEEEEEEEEET---TTCCEEEEEEEEEEECCGGGH
T ss_pred HcCCEEEcCCEEEEEEEc-CCeEEEEEEEEc---CCCceEEEECCEEEECCCcch
Confidence 568999999999999874 467777776532 145567899999999999754
|
| >2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0053 Score=60.45 Aligned_cols=48 Identities=13% Similarity=0.241 Sum_probs=36.7
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.|++++++ .++++..++++.+..+++ .+++++.+|.||.|+|.....
T Consensus 185 ~~gv~~~~~-~v~~i~~~~~~~~~~v~~--------~~g~~~~ad~vV~A~G~~S~~ 232 (511)
T 2weu_A 185 ARGVRHVVD-DVQHVGQDERGWISGVHT--------KQHGEISGDLFVDCTGFRGLL 232 (511)
T ss_dssp HTTCEEEEC-CEEEEEECTTSCEEEEEE--------SSSCEEECSEEEECCGGGCCC
T ss_pred HCCCEEEEC-eEeEEEEcCCCCEEEEEE--------CCCCEEEcCEEEECCCcchHH
Confidence 458999999 899988755566666654 234579999999999997654
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.013 Score=62.87 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=30.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKLP 48 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~~ 48 (388)
.++|+|||||..|+.+|..+.+ .|. +|+++++.+
T Consensus 332 ~~~VvVIGgG~~g~e~A~~~~~--~G~~~Vtvv~r~~ 366 (1025)
T 1gte_A 332 RGAVIVLGAGDTAFDCATSALR--CGARRVFLVFRKG 366 (1025)
T ss_dssp CSEEEEECSSHHHHHHHHHHHH--TTCSEEEEECSSC
T ss_pred CCcEEEECCChHHHHHHHHHHH--cCCCEEEEEEecC
Confidence 5699999999999999999999 786 899999875
|
| >1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.024 Score=54.98 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=30.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHhh------------------CCC-CcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKL------------------LPQ-STVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~------------------~~g-~~v~lie~~~~ 49 (388)
..++|+|||+|+.|+.+|..|.+. ..+ .+|+++++.+.
T Consensus 146 ~~~~vvVIG~G~~g~e~A~~L~~~~~~l~~tdi~~~~~~~l~~~g~~~V~lv~r~~~ 202 (456)
T 1lqt_A 146 SGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPRGIQEVVIVGRRGP 202 (456)
T ss_dssp CSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTCCCCEEEEECSSCG
T ss_pred CCCEEEEECCCHHHHHHHHHHHhhhhhhcCCCccHHHHHHHHHCCCcEEEEEecCCh
Confidence 458999999999999999999872 024 48999998754
|
| >2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.01 Score=55.76 Aligned_cols=46 Identities=11% Similarity=0.144 Sum_probs=32.9
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.|+++++++.++++..++++ + .++ +.++ ++.||.||+|+|...+.
T Consensus 162 ~~Gv~i~~~~~v~~i~~~~~~-~-~v~--------~~~g-~~~a~~vV~A~G~~~~~ 207 (389)
T 2gf3_A 162 ARGAKVLTHTRVEDFDISPDS-V-KIE--------TANG-SYTADKLIVSMGAWNSK 207 (389)
T ss_dssp HTTCEEECSCCEEEEEECSSC-E-EEE--------ETTE-EEEEEEEEECCGGGHHH
T ss_pred HCCCEEEcCcEEEEEEecCCe-E-EEE--------eCCC-EEEeCEEEEecCccHHH
Confidence 468999999999999865432 2 232 2333 69999999999987543
|
| >1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.025 Score=54.89 Aligned_cols=38 Identities=21% Similarity=0.168 Sum_probs=31.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhh------------------CCCC-cEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKL------------------LPQS-TVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~------------------~~g~-~v~lie~~~~ 49 (388)
..++|+|||+|..|+.+|..|.+. ..+. +|+|+++.+.
T Consensus 144 ~~~~vvVIGgG~~g~e~A~~L~~~~~~l~~tdi~~~a~~~l~~~g~~~V~lv~r~~~ 200 (460)
T 1cjc_A 144 SCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQSRVKTVWIVGRRGP 200 (460)
T ss_dssp TSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTCCCCEEEEECSSCG
T ss_pred CCCEEEEECCCHHHHHHHHHHhhchhhhccccccHHHHHHHhhCCCcEEEEEEcCCh
Confidence 468999999999999999999830 1576 7999998754
|
| >1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0054 Score=60.49 Aligned_cols=36 Identities=19% Similarity=0.186 Sum_probs=33.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
..+|++|||+|++|+.+|..|.+ .+.+|+++|+...
T Consensus 10 ~~~d~~iiG~G~~g~~~a~~l~~--~~~~v~~~e~~~~ 45 (507)
T 1coy_A 10 DRVPALVIGSGYGGAVAALRLTQ--AGIPTQIVEMGRS 45 (507)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSCC
T ss_pred CcCCEEEECCCHHHHHHHHHHHH--CCCcEEEEECCCC
Confidence 45899999999999999999999 8999999998754
|
| >2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.033 Score=56.43 Aligned_cols=69 Identities=13% Similarity=0.193 Sum_probs=41.1
Q ss_pred hhHHHHHHHhhCCCCCCCCCCcee--EEEEecCcceeeeeCCC--CceeEEEEccCccccCCceeEEecceEEEccccCC
Q psy4525 249 RKRLTELILKTSNPDESKSNCSKY--FRPIFLRSPTEFKLNDN--GAITGINFANQQALVTEDTELIPSGIAFRSIGYQS 324 (388)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~g--v~~~~~~~~~~i~~~~~--~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p 324 (388)
+.++...|...+. +.| +++++++.++.+..+++ +....+.+.+......+..+++.||.||.|.|.+.
T Consensus 140 q~~l~~~L~~~a~--------~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~G~~~~i~a~~vVgADG~~S 211 (639)
T 2dkh_A 140 QARVHDHYLERMR--------NSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQARYVVGCDGARS 211 (639)
T ss_dssp HHHHHHHHHHHHH--------HSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGTTCEEEEEEEEEEECCCTTC
T ss_pred HHHHHHHHHHHHH--------hCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCCCCeEEEEeCEEEECCCcch
Confidence 4455555555432 334 48889999999886542 22233444320000123446899999999999876
Q ss_pred c
Q psy4525 325 R 325 (388)
Q Consensus 325 ~ 325 (388)
.
T Consensus 212 ~ 212 (639)
T 2dkh_A 212 N 212 (639)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.017 Score=56.36 Aligned_cols=48 Identities=17% Similarity=0.076 Sum_probs=34.3
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.|+++++++.+ ++..+ ++++.++.+. +.++ ++.+|.||+|||-.+..
T Consensus 131 ~~gv~i~~~~~v-~l~~~-~~~v~Gv~v~------~~~g-~~~a~~VVlAtGg~~~~ 178 (472)
T 2e5v_A 131 EEGIPIIEDRLV-EIRVK-DGKVTGFVTE------KRGL-VEDVDKLVLATGGYSYL 178 (472)
T ss_dssp HTTCCEECCCEE-EEEEE-TTEEEEEEET------TTEE-ECCCSEEEECCCCCGGG
T ss_pred hCCCEEEECcEE-EEEEe-CCEEEEEEEE------eCCC-eEEeeeEEECCCCCccc
Confidence 458999999888 88653 4677666542 2223 47799999999987654
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.017 Score=50.19 Aligned_cols=35 Identities=14% Similarity=0.196 Sum_probs=31.8
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
-..++|+|||||..|...+..|.+ .|.+|+|+++.
T Consensus 29 L~gk~VLVVGgG~va~~ka~~Ll~--~GA~VtVvap~ 63 (223)
T 3dfz_A 29 LKGRSVLVVGGGTIATRRIKGFLQ--EGAAITVVAPT 63 (223)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHGG--GCCCEEEECSS
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEECCC
Confidence 356899999999999999999999 89999999864
|
| >4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.027 Score=55.36 Aligned_cols=68 Identities=9% Similarity=-0.022 Sum_probs=44.2
Q ss_pred hhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCC----c--eeEEEEccCccccCCceeEEecceEEEcccc
Q psy4525 249 RKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNG----A--ITGINFANQQALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~----~--v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
+..+..++...+. +-+..++|++.|+++...+.+ . .-.|+..++ .++..+++.|+.||+|||.
T Consensus 144 r~E~~~Yl~~~A~--------~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~---~~g~~~~~~ar~vVlatG~ 212 (501)
T 4b63_A 144 RLEFEDYMRWCAQ--------QFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNV---ETGEISARRTRKVVIAIGG 212 (501)
T ss_dssp HHHHHHHHHHHHH--------TTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEET---TTCCEEEEEEEEEEECCCC
T ss_pred HHHHHHHHHHHHH--------HcCCceEcceEEEeeccccccccccccceEEEEEecC---CCceEEEEEeCEEEECcCC
Confidence 5667777776653 223457788999988764322 1 223333332 2566788999999999998
Q ss_pred CCccC
Q psy4525 323 QSRCV 327 (388)
Q Consensus 323 ~p~~~ 327 (388)
.|+..
T Consensus 213 ~P~iP 217 (501)
T 4b63_A 213 TAKMP 217 (501)
T ss_dssp EECCC
T ss_pred CCCCC
Confidence 87654
|
| >1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0042 Score=61.73 Aligned_cols=35 Identities=26% Similarity=0.377 Sum_probs=31.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
.+|+||||+|+||+.+|..|.+ +.+|+|+|+.+..
T Consensus 26 ~yD~IIVGsG~AG~v~A~rLse---g~~VlvLEaG~~~ 60 (536)
T 1ju2_A 26 SYDYVIVGGGTSGCPLAATLSE---KYKVLVLERGSLP 60 (536)
T ss_dssp EEEEEEECCSTTHHHHHHHHTT---TSCEEEECSSBCG
T ss_pred cccEEEECccHHHHHHHHHHhc---CCcEEEEecCCCc
Confidence 4799999999999999999998 7899999998654
|
| >1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.047 Score=57.13 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=34.5
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
+.|+++++++.++++..+ ++.+..+.. .++ ++.||.||+|+|....
T Consensus 163 ~~Gv~i~~~t~V~~i~~~-~~~v~~V~t--------~~G-~i~Ad~VV~AaG~~s~ 208 (830)
T 1pj5_A 163 SAGVTYRGSTTVTGIEQS-GGRVTGVQT--------ADG-VIPADIVVSCAGFWGA 208 (830)
T ss_dssp HTTCEEECSCCEEEEEEE-TTEEEEEEE--------TTE-EEECSEEEECCGGGHH
T ss_pred HcCCEEECCceEEEEEEe-CCEEEEEEE--------CCc-EEECCEEEECCccchH
Confidence 568999999999999764 355555542 334 6999999999998643
|
| >3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii} | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0041 Score=62.09 Aligned_cols=37 Identities=24% Similarity=0.287 Sum_probs=32.6
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
.+|+||||||.||+.+|.+|.+. ++.+|+|+|+.+..
T Consensus 2 ~yD~IIVG~G~aG~v~A~rLse~-~~~~VlllEaG~~~ 38 (566)
T 3fim_B 2 DFDYVVVGAGNAGNVVAARLTED-PDVSVLVLEAGVSD 38 (566)
T ss_dssp CEEEEESCCSTTHHHHHHHHTTS-TTCCEEEECSSBCC
T ss_pred CcCEEEECCcHHHHHHHHHHHhC-cCCcEEEEecCCcc
Confidence 37999999999999999999973 68999999998654
|
| >2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.062 Score=53.87 Aligned_cols=51 Identities=12% Similarity=0.035 Sum_probs=37.6
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
+.|+++++++.++++..++++++.++...+. ..+....+.||.||+|||--
T Consensus 155 ~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~---~~g~~~~i~A~~VVlAtGg~ 205 (588)
T 2wdq_A 155 KNHTTIFSEWYALDLVKNQDGAVVGCTALCI---ETGEVVYFKARATVLATGGA 205 (588)
T ss_dssp HTTCEEEETEEEEEEEECTTSCEEEEEEEET---TTCCEEEEEEEEEEECCCCC
T ss_pred hCCCEEEeCcEEEEEEECCCCEEEEEEEEEc---CCCeEEEEEcCEEEECCCCC
Confidence 4589999999999998753578888765321 12333579999999999963
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0097 Score=57.71 Aligned_cols=76 Identities=12% Similarity=0.103 Sum_probs=52.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++|.|||.|.+|+++|..|.+ .|++|+++|..+. . ... ..+.+++.|+.+..+..
T Consensus 8 ~~k~v~viG~G~sG~s~A~~l~~--~G~~V~~~D~~~~------------~--~~~----~~~~L~~~gi~~~~g~~--- 64 (451)
T 3lk7_A 8 ENKKVLVLGLARSGEAAARLLAK--LGAIVTVNDGKPF------------D--ENP----TAQSLLEEGIKVVCGSH--- 64 (451)
T ss_dssp TTCEEEEECCTTTHHHHHHHHHH--TTCEEEEEESSCG------------G--GCH----HHHHHHHTTCEEEESCC---
T ss_pred CCCEEEEEeeCHHHHHHHHHHHh--CCCEEEEEeCCcc------------c--CCh----HHHHHHhCCCEEEECCC---
Confidence 46899999999999999999999 8999999998631 0 001 12234446787765432
Q ss_pred Eeeecccccc-cCEEEEeeCCCC
Q psy4525 92 DISLGDLTNA-YHAVVLTYGADN 113 (388)
Q Consensus 92 ~~~~~~~~~~-yd~lvlAtG~~~ 113 (388)
....... +|.||+++|..+
T Consensus 65 ---~~~~~~~~~d~vv~spgi~~ 84 (451)
T 3lk7_A 65 ---PLELLDEDFCYMIKNPGIPY 84 (451)
T ss_dssp ---CGGGGGSCEEEEEECTTSCT
T ss_pred ---hHHhhcCCCCEEEECCcCCC
Confidence 1112123 899999999655
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=95.61 E-value=0.014 Score=47.52 Aligned_cols=35 Identities=20% Similarity=0.206 Sum_probs=31.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
...+|+|||+|..|..+|..|.+ .|.+|+++++.+
T Consensus 18 ~~~~v~IiG~G~iG~~la~~L~~--~g~~V~vid~~~ 52 (155)
T 2g1u_A 18 KSKYIVIFGCGRLGSLIANLASS--SGHSVVVVDKNE 52 (155)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCG
T ss_pred CCCcEEEECCCHHHHHHHHHHHh--CCCeEEEEECCH
Confidence 45789999999999999999999 899999999863
|
| >2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.17 Score=50.24 Aligned_cols=47 Identities=13% Similarity=0.060 Sum_probs=31.7
Q ss_pred EEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 275 PIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 275 ~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+++++.++++..++++ +. +++.+. .++..+++.||.||.|.|.....
T Consensus 152 v~~~~~v~~~~~~~~~-v~-v~~~~~---~~G~~~~i~a~~vVgADG~~S~v 198 (549)
T 2r0c_A 152 LRTRSRLDSFEQRDDH-VR-ATITDL---RTGATRAVHARYLVACDGASSPT 198 (549)
T ss_dssp EECSEEEEEEEECSSC-EE-EEEEET---TTCCEEEEEEEEEEECCCTTCHH
T ss_pred cccCcEEEEEEEeCCE-EE-EEEEEC---CCCCEEEEEeCEEEECCCCCcHH
Confidence 8889999999875433 33 333221 02334689999999999988643
|
| >1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.054 Score=53.71 Aligned_cols=51 Identities=16% Similarity=0.109 Sum_probs=36.8
Q ss_pred eeEEEEecCcceeeeeCCCC------ceeEEEEccCccccCCceeEEecceEEEccccCC
Q psy4525 271 KYFRPIFLRSPTEFKLNDNG------AITGINFANQQALVTEDTELIPSGIAFRSIGYQS 324 (388)
Q Consensus 271 ~gv~~~~~~~~~~i~~~~~~------~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p 324 (388)
.||++++++.++++..++++ ++.++...+. .+++...+.||.||+|||-..
T Consensus 152 ~gv~i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~---~~G~~~~i~A~~VVlAtGg~~ 208 (540)
T 1chu_A 152 PNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNR---NKETVETCHAKAVVLATGGAS 208 (540)
T ss_dssp TTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEET---TTTEEEEEECSEEEECCCCCG
T ss_pred CCCEEEeCcEEEEEEEcCCCCcccCCEEEEEEEEEc---CCCcEEEEEcCeEEECCCCcc
Confidence 58999999999999863334 7777765421 123334799999999999654
|
| >1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.14 Score=51.53 Aligned_cols=51 Identities=10% Similarity=0.060 Sum_probs=35.9
Q ss_pred cee-EEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCC
Q psy4525 270 SKY-FRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQS 324 (388)
Q Consensus 270 ~~g-v~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p 324 (388)
+.+ +++++++.++++..+ ++++.++...+. ..+....+.+|.||+|+|-..
T Consensus 146 ~~gnv~i~~~~~v~~l~~~-~g~v~Gv~~~~~---~~G~~~~i~A~~VVlAtGg~s 197 (602)
T 1kf6_A 146 QFPQIQRFDEHFVLDILVD-DGHVRGLVAMNM---MEGTLVQIRANAVVMATGGAG 197 (602)
T ss_dssp TCTTEEEEETEEEEEEEEE-TTEEEEEEEEET---TTTEEEEEECSCEEECCCCCG
T ss_pred hCCCcEEEeCCEEEEEEEe-CCEEEEEEEEEc---CCCcEEEEEcCeEEECCCCCc
Confidence 456 999999999999864 467777654210 123334799999999999643
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.028 Score=44.84 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=31.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
...+|+|+|+|..|..+|..|.+ .|.+|+++|++
T Consensus 6 ~~~~viIiG~G~~G~~la~~L~~--~g~~v~vid~~ 39 (140)
T 3fwz_A 6 ICNHALLVGYGRVGSLLGEKLLA--SDIPLVVIETS 39 (140)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHH--TTCCEEEEESC
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--CCCCEEEEECC
Confidence 35689999999999999999999 89999999986
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.025 Score=45.81 Aligned_cols=33 Identities=15% Similarity=0.200 Sum_probs=30.6
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
..+++|+|+|..|...+..|.+ .|.+|+++|+.
T Consensus 3 ~~~vlI~G~G~vG~~la~~L~~--~g~~V~vid~~ 35 (153)
T 1id1_A 3 KDHFIVCGHSILAINTILQLNQ--RGQNVTVISNL 35 (153)
T ss_dssp CSCEEEECCSHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred CCcEEEECCCHHHHHHHHHHHH--CCCCEEEEECC
Confidence 4689999999999999999999 89999999975
|
| >1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1 | Back alignment and structure |
|---|
Probab=95.30 E-value=0.013 Score=58.78 Aligned_cols=38 Identities=24% Similarity=0.240 Sum_probs=33.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
..+|++|||+|++|+.+|..|.+. .+.+|+++|+....
T Consensus 23 ~~~d~iivG~G~~g~~~a~~l~~~-~~~~v~~~e~g~~~ 60 (587)
T 1gpe_A 23 KTYDYIIAGGGLTGLTVAAKLTEN-PKIKVLVIEKGFYE 60 (587)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHTS-TTCCEEEEESSCCC
T ss_pred ccCCEEEECcCHHHHHHHHHHHhC-CCCcEEEEecCCcc
Confidence 458999999999999999999983 58999999998543
|
| >3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.016 Score=55.17 Aligned_cols=44 Identities=9% Similarity=0.093 Sum_probs=28.6
Q ss_pred ceeEEEEecCcce---------eeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCC
Q psy4525 270 SKYFRPIFLRSPT---------EFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQS 324 (388)
Q Consensus 270 ~~gv~~~~~~~~~---------~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p 324 (388)
+.|+++++++.++ ++..++ +.+ .++ +.++ ++.||.||.|+|...
T Consensus 184 ~~Gv~i~~~~~v~~~~g~~~~~~i~~~~-~~v-~v~--------~~~g-~i~a~~VV~A~G~~s 236 (405)
T 3c4n_A 184 GQGAGLLLNTRAELVPGGVRLHRLTVTN-THQ-IVV--------HETR-QIRAGVIIVAAGAAG 236 (405)
T ss_dssp TTTCEEECSCEEEEETTEEEEECBCC---------C--------BCCE-EEEEEEEEECCGGGH
T ss_pred HCCCEEEcCCEEEeccccccccceEeeC-CeE-EEE--------ECCc-EEECCEEEECCCccH
Confidence 4689999998888 776432 333 332 3344 799999999999764
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.07 E-value=0.029 Score=44.63 Aligned_cols=33 Identities=18% Similarity=0.220 Sum_probs=30.7
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
.++++|+|+|..|..+|..|.+ .|++|+++|++
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~--~g~~V~~id~~ 38 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTA--AGKKVLAVDKS 38 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCeEEEEECC
Confidence 4689999999999999999999 89999999976
|
| >2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ... | Back alignment and structure |
|---|
Probab=95.05 E-value=0.19 Score=50.70 Aligned_cols=51 Identities=8% Similarity=-0.066 Sum_probs=37.7
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQS 324 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p 324 (388)
+.|+++++++.++++..+ ++++.++...+. .++....+.|+.||+|||-..
T Consensus 167 ~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~---~~G~~~~i~A~~VVlATGG~~ 217 (621)
T 2h88_A 167 RYDTSYFVEYFALDLLME-NGECRGVIALCI---EDGTIHRFRAKNTVIATGGYG 217 (621)
T ss_dssp TSCCEEEETEEEEEEEEE-TTEEEEEEEEET---TTCCEEEEEEEEEEECCCCCG
T ss_pred hCCCEEEEceEEEEEEEE-CCEEEEEEEEEc---CCCcEEEEEcCeEEECCCccc
Confidence 568999999999999864 477877765321 123345799999999999643
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=94.93 E-value=0.063 Score=49.50 Aligned_cols=74 Identities=15% Similarity=0.110 Sum_probs=50.6
Q ss_pred CCCcEEEECccHHHHH-HHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 12 LKPNVCIVGSGPAGFY-CAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~-aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
..++|.|||.|.+|++ +|..|.+ .|++|+++|+.+.. | . .+.+++.|+.+..+..
T Consensus 3 ~~~~i~~iGiGg~Gms~~A~~L~~--~G~~V~~~D~~~~~---------~-------~----~~~L~~~gi~v~~g~~-- 58 (326)
T 3eag_A 3 AMKHIHIIGIGGTFMGGLAAIAKE--AGFEVSGCDAKMYP---------P-------M----STQLEALGIDVYEGFD-- 58 (326)
T ss_dssp CCCEEEEESCCSHHHHHHHHHHHH--TTCEEEEEESSCCT---------T-------H----HHHHHHTTCEEEESCC--
T ss_pred CCcEEEEEEECHHHHHHHHHHHHh--CCCEEEEEcCCCCc---------H-------H----HHHHHhCCCEEECCCC--
Confidence 3578999999999997 7888888 89999999986321 1 1 1223345777654321
Q ss_pred EEeeecccc-cccCEEEEeeCCCC
Q psy4525 91 QDISLGDLT-NAYHAVVLTYGADN 113 (388)
Q Consensus 91 ~~~~~~~~~-~~yd~lvlAtG~~~ 113 (388)
..... ..+|.||++.|..+
T Consensus 59 ----~~~l~~~~~d~vV~Spgi~~ 78 (326)
T 3eag_A 59 ----AAQLDEFKADVYVIGNVAKR 78 (326)
T ss_dssp ----GGGGGSCCCSEEEECTTCCT
T ss_pred ----HHHcCCCCCCEEEECCCcCC
Confidence 12222 35899999999654
|
| >2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A* | Back alignment and structure |
|---|
Probab=94.93 E-value=0.07 Score=52.28 Aligned_cols=51 Identities=8% Similarity=-0.112 Sum_probs=35.0
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
+.|+++++++.++++..++ .+..+.+.+. ..++..++.||.||.|+|....
T Consensus 161 ~~Gv~i~~~~~V~~l~~~~--~~~~V~~~d~---~~G~~~~i~A~~VV~AtG~~s~ 211 (501)
T 2qcu_A 161 RKGGEVLTRTRATSARREN--GLWIVEAEDI---DTGKKYSWQARGLVNATGPWVK 211 (501)
T ss_dssp HTTCEEECSEEEEEEEEET--TEEEEEEEET---TTCCEEEEEESCEEECCGGGHH
T ss_pred HcCCEEEcCcEEEEEEEeC--CEEEEEEEEC---CCCCEEEEECCEEEECCChhHH
Confidence 4689999999999987643 4555554221 0233347999999999997643
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=94.91 E-value=0.029 Score=44.22 Aligned_cols=33 Identities=15% Similarity=0.236 Sum_probs=29.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
.++|+|||+|..|..+|..|.+ .|.+|+++|+.
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~--~g~~v~~~d~~ 36 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSE--KGHDIVLIDID 36 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCeEEEEECC
Confidence 3589999999999999999999 89999999975
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.029 Score=42.78 Aligned_cols=33 Identities=24% Similarity=0.439 Sum_probs=30.0
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCC-CcEEEEcCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQ-STVDIYEKL 47 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g-~~v~lie~~ 47 (388)
.++|+|+|+|..|..++..|.+ .| .+|+++++.
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~--~g~~~v~~~~r~ 38 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKT--SSNYSVTVADHD 38 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH--CSSEEEEEEESC
T ss_pred cCeEEEECCCHHHHHHHHHHHh--CCCceEEEEeCC
Confidence 4689999999999999999999 78 899999976
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=94.36 E-value=0.047 Score=43.15 Aligned_cols=33 Identities=12% Similarity=0.126 Sum_probs=30.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
.++|+|+|+|..|..++..|.+ .|.+|+++|+.
T Consensus 6 ~~~v~I~G~G~iG~~~a~~l~~--~g~~v~~~d~~ 38 (144)
T 2hmt_A 6 NKQFAVIGLGRFGGSIVKELHR--MGHEVLAVDIN 38 (144)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH--TTCCCEEEESC
T ss_pred CCcEEEECCCHHHHHHHHHHHH--CCCEEEEEeCC
Confidence 4689999999999999999999 89999999975
|
| >3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.14 Score=52.01 Aligned_cols=48 Identities=17% Similarity=0.050 Sum_probs=36.1
Q ss_pred eEEEEecCcceeeeeCCC--CceeEEEEccCccccCCceeEEecceEEEcccc
Q psy4525 272 YFRPIFLRSPTEFKLNDN--GAITGINFANQQALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 272 gv~~~~~~~~~~i~~~~~--~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
||+++.++.++++..+++ +++.++...+. .+++...+.|+.||+|||-
T Consensus 182 gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~---~~g~~~~i~Ak~VVLATGG 231 (662)
T 3gyx_A 182 QDRIIERIFIVKLLLDKNTPNRIAGAVGFNL---RANEVHIFKANAMVVACGG 231 (662)
T ss_dssp TTTEECSEEECCCEECSSSTTBEEEEEEEES---SSSCEEEEECSEEEECCCC
T ss_pred CcEEEEceEEEEEEEeCCccceEEEEEEEEc---CCCcEEEEEeCEEEECCCc
Confidence 789999999988877554 48888865321 1455567999999999994
|
| >2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A* | Back alignment and structure |
|---|
Probab=94.02 E-value=0.16 Score=51.52 Aligned_cols=51 Identities=12% Similarity=-0.040 Sum_probs=37.0
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQS 324 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p 324 (388)
+.|+++++++.++++..+ ++++.++...+. ..+....+.||.||+|||--.
T Consensus 170 ~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~---~~G~~~~i~A~~VVlATGG~~ 220 (660)
T 2bs2_A 170 KLGVSIQDRKEAIALIHQ-DGKCYGAVVRDL---VTGDIIAYVAKGTLIATGGYG 220 (660)
T ss_dssp HHTCEEECSEEEEEEEEE-TTEEEEEEEEET---TTCCEEEEECSEEEECCCCCG
T ss_pred hCCCEEEECcEEEEEEec-CCEEEEEEEEEC---CCCcEEEEEcCEEEEccCcch
Confidence 468999999999999764 477877765321 123334699999999999643
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=93.95 E-value=0.044 Score=47.70 Aligned_cols=33 Identities=21% Similarity=0.363 Sum_probs=27.7
Q ss_pred eEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 154 EATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 154 ~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
.|+|||+|++|+-+|..|+ +.|. +|+++.+++.
T Consensus 4 dV~IIGaGpaGL~aA~~La--------------------~~G~-~V~v~Ek~~~ 36 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALT--------------------AAGH-QVHLFDKSRG 36 (336)
T ss_dssp CEEEECCSHHHHHHHHHHH--------------------HTTC-CEEEECSSSS
T ss_pred CEEEECcCHHHHHHHHHHH--------------------HCCC-CEEEEECCCC
Confidence 5999999999999999887 4555 5999998754
|
| >1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement, oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum} SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A* | Back alignment and structure |
|---|
Probab=93.95 E-value=0.28 Score=49.90 Aligned_cols=20 Identities=30% Similarity=0.484 Sum_probs=18.2
Q ss_pred CeEEEEcCChHHHHHHHHhc
Q psy4525 153 EEATILGQGNVAMDVARILL 172 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~ 172 (388)
-+|+|||+|.+|+-+|..|+
T Consensus 9 ~dVlIVGaGpaGL~lA~~La 28 (665)
T 1pn0_A 9 CDVLIVGAGPAGLMAARVLS 28 (665)
T ss_dssp EEEEEECCSHHHHHHHHHHH
T ss_pred CcEEEECcCHHHHHHHHHHh
Confidence 36999999999999999886
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=93.84 E-value=0.066 Score=44.66 Aligned_cols=33 Identities=18% Similarity=0.079 Sum_probs=30.6
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCC-CCcEEEEcCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLP-QSTVDIYEKL 47 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~-g~~v~lie~~ 47 (388)
..+|+|||+|..|..+|..|.+ . |.+|+++|++
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~--~~g~~V~vid~~ 72 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRA--RYGKISLGIEIR 72 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHH--HHCSCEEEEESC
T ss_pred CCcEEEECCCHHHHHHHHHHHh--ccCCeEEEEECC
Confidence 4689999999999999999999 8 9999999976
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.71 E-value=0.073 Score=50.40 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=32.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
.+.+|+|||+|++|+.+|..+.. .|.+|+++|+.+
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~--lGa~V~v~D~~~ 223 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARR--LGAVVSATDVRP 223 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSST
T ss_pred CCCEEEEECCcHHHHHHHHHHHH--CCCEEEEEcCCH
Confidence 45799999999999999999999 899999999873
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=93.64 E-value=0.058 Score=51.99 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=32.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
..++|+|||.|.+|+++|..|.+ .|++|+++|....
T Consensus 4 ~~~~v~viG~G~~G~~~a~~l~~--~G~~v~~~D~~~~ 39 (439)
T 2x5o_A 4 QGKNVVIIGLGLTGLSCVDFFLA--RGVTPRVMDTRMT 39 (439)
T ss_dssp TTCCEEEECCHHHHHHHHHHHHT--TTCCCEEEESSSS
T ss_pred CCCEEEEEeecHHHHHHHHHHHh--CCCEEEEEECCCC
Confidence 34789999999999999999988 8999999997643
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=93.57 E-value=0.12 Score=49.98 Aligned_cols=34 Identities=18% Similarity=0.209 Sum_probs=31.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
..++|+|||+|..|...+..|.+ .|.+|+++++.
T Consensus 11 ~~~~vlVvGgG~va~~k~~~L~~--~ga~V~vi~~~ 44 (457)
T 1pjq_A 11 RDRDCLIVGGGDVAERKARLLLE--AGARLTVNALT 44 (457)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHH--TTBEEEEEESS
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CcCEEEEEcCC
Confidence 45799999999999999999999 89999999964
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=93.07 E-value=0.069 Score=47.84 Aligned_cols=34 Identities=9% Similarity=0.250 Sum_probs=31.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
..++|+|||||..|...+..|.+ .|.+|+|++..
T Consensus 12 ~~k~VLVVGgG~va~rka~~Ll~--~Ga~VtViap~ 45 (274)
T 1kyq_A 12 KDKRILLIGGGEVGLTRLYKLMP--TGCKLTLVSPD 45 (274)
T ss_dssp TTCEEEEEEESHHHHHHHHHHGG--GTCEEEEEEEE
T ss_pred CCCEEEEECCcHHHHHHHHHHHh--CCCEEEEEcCC
Confidence 56899999999999999999999 89999999965
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=93.04 E-value=0.075 Score=49.89 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=31.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
.+.+|+|||+|.+|+.+|..+.. .|.+|+++|+.+
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~--lGa~V~v~D~~~ 217 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKR--LGAKTTGYDVRP 217 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHH--HTCEEEEECSSG
T ss_pred CCCEEEEECchHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence 45799999999999999999999 799999999873
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.04 E-value=0.095 Score=45.07 Aligned_cols=31 Identities=29% Similarity=0.444 Sum_probs=29.4
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
+|+|+|+|..|..+|..|.+ .|.+|+++|++
T Consensus 2 ~iiIiG~G~~G~~la~~L~~--~g~~v~vid~~ 32 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLS--RKYGVVIINKD 32 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHH--TTCCEEEEESC
T ss_pred EEEEECCCHHHHHHHHHHHh--CCCeEEEEECC
Confidence 69999999999999999999 89999999976
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=92.60 E-value=0.14 Score=46.09 Aligned_cols=33 Identities=27% Similarity=0.238 Sum_probs=30.7
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
.++|.|||+|..|...|..+.+ .|++|+++|++
T Consensus 4 ~~kV~VIGaG~mG~~iA~~la~--~G~~V~l~d~~ 36 (283)
T 4e12_A 4 ITNVTVLGTGVLGSQIAFQTAF--HGFAVTAYDIN 36 (283)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCeEEEEeCC
Confidence 3689999999999999999999 89999999987
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=92.50 E-value=0.12 Score=49.07 Aligned_cols=34 Identities=18% Similarity=0.278 Sum_probs=31.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
.+.+|+|||+|.+|+.++..++. .|.+|+++|+.
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~--~Ga~V~v~D~~ 204 (401)
T 1x13_A 171 PPAKVMVIGAGVAGLAAIGAANS--LGAIVRAFDTR 204 (401)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEcCC
Confidence 46799999999999999999998 89999999976
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=92.40 E-value=0.15 Score=48.22 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=31.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
.+.+|+|||+|.+|+.++..++. .|.+|+++|+.+
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~--~Ga~V~~~d~~~ 205 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKR--LGAVVMATDVRA 205 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence 46899999999999999999999 899999999873
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=92.28 E-value=0.061 Score=52.48 Aligned_cols=45 Identities=7% Similarity=0.012 Sum_probs=35.4
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
+.|.+|++++.|++|..+ ++++.+|++ .+++++.||.||++++..
T Consensus 233 ~~Gg~I~~~~~V~~I~~~-~~~~~gV~~--------~~g~~~~ad~VV~~a~~~ 277 (501)
T 4dgk_A 233 DLGGEVVLNARVSHMETT-GNKIEAVHL--------EDGRRFLTQAVASNADVV 277 (501)
T ss_dssp HTTCEEECSCCEEEEEEE-TTEEEEEEE--------TTSCEEECSCEEECCC--
T ss_pred HhCCceeeecceeEEEee-CCeEEEEEe--------cCCcEEEcCEEEECCCHH
Confidence 457899999999999875 478888865 456789999999998754
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=92.04 E-value=0.073 Score=42.52 Aligned_cols=33 Identities=21% Similarity=0.204 Sum_probs=30.0
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
.++|+|||+|..|...+..|.+ .|.+|+++++.
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~--~g~~v~v~~r~ 53 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSY--PQYKVTVAGRN 53 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCT--TTCEEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCEEEEEcCC
Confidence 6799999999999999999988 78889999976
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=91.84 E-value=0.14 Score=48.15 Aligned_cols=35 Identities=20% Similarity=0.425 Sum_probs=31.9
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~ 47 (388)
..+.+|||+|+|.||+.+|..+.. .|. +|+++|+.
T Consensus 186 l~d~kVVi~GAGaAG~~iA~ll~~--~Ga~~I~v~D~~ 221 (398)
T 2a9f_A 186 LDEVSIVVNGGGSAGLSITRKLLA--AGATKVTVVDKF 221 (398)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHH--HTCCEEEEEETT
T ss_pred CCccEEEEECCCHHHHHHHHHHHH--cCCCeEEEEECC
Confidence 456799999999999999999999 798 99999987
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=91.57 E-value=0.5 Score=40.84 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=36.0
Q ss_pred CCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCc
Q psy4525 149 SLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHV 226 (388)
Q Consensus 149 ~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~ 226 (388)
...+++|+|||||.+|...+..|. +.|+ +|+++.+.. .+++.++.....+
T Consensus 28 ~L~gk~VLVVGgG~va~~ka~~Ll--------------------~~GA-~VtVvap~~-------~~~l~~l~~~~~i 77 (223)
T 3dfz_A 28 DLKGRSVLVVGGGTIATRRIKGFL--------------------QEGA-AITVVAPTV-------SAEINEWEAKGQL 77 (223)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHG--------------------GGCC-CEEEECSSC-------CHHHHHHHHTTSC
T ss_pred EcCCCEEEEECCCHHHHHHHHHHH--------------------HCCC-EEEEECCCC-------CHHHHHHHHcCCc
Confidence 456899999999999999999776 3455 599988642 2456666544433
|
| >4ffl_A PYLC; amino acid, biosynthesis of pyrrolysine, isopeptide bond for ATP-grAsp fold, ligase, ATP-binding, L-lysine and 3R-methyl ornithine; HET: LYS ADP ATP; 1.50A {Methanosarcina barkeri} PDB: 4ffm_A* 4ffn_A* 4ffo_A* 4ffp_A* 4ffr_A* | Back alignment and structure |
|---|
Probab=91.53 E-value=0.2 Score=46.69 Aligned_cols=35 Identities=29% Similarity=0.398 Sum_probs=31.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
+|+|+|||||..|..++..+++ .|++++++|..+.
T Consensus 1 MK~I~ilGgg~~g~~~~~~Ak~--~G~~vv~vd~~~~ 35 (363)
T 4ffl_A 1 MKTICLVGGKLQGFEAAYLSKK--AGMKVVLVDKNPQ 35 (363)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCTT
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCCC
Confidence 3789999999999999999999 9999999997754
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=91.50 E-value=0.19 Score=45.91 Aligned_cols=34 Identities=12% Similarity=0.167 Sum_probs=30.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC--cEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQS--TVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~--~v~lie~~ 47 (388)
.+.+|+|||+|..|...|..|.+ .|. +|+++|+.
T Consensus 6 ~~mkI~IiGaG~vG~~~a~~l~~--~g~~~~V~l~d~~ 41 (319)
T 1lld_A 6 KPTKLAVIGAGAVGSTLAFAAAQ--RGIAREIVLEDIA 41 (319)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHH--TTCCSEEEEECSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CCCCCEEEEEeCC
Confidence 34689999999999999999998 787 99999976
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=91.35 E-value=0.24 Score=42.35 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=31.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
..++|.|||+|..|.+.|..|.+ .|.+|+++++.+.
T Consensus 18 ~~~~I~iiG~G~mG~~la~~l~~--~g~~V~~~~~~~~ 53 (209)
T 2raf_A 18 QGMEITIFGKGNMGQAIGHNFEI--AGHEVTYYGSKDQ 53 (209)
T ss_dssp --CEEEEECCSHHHHHHHHHHHH--TTCEEEEECTTCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEcCCHH
Confidence 35689999999999999999999 8999999998754
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=91.35 E-value=0.24 Score=44.91 Aligned_cols=33 Identities=24% Similarity=0.259 Sum_probs=30.6
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
.++|.|||+|..|...|..|.+ .|++|+++|++
T Consensus 15 ~~~I~VIG~G~mG~~iA~~la~--~G~~V~~~d~~ 47 (302)
T 1f0y_A 15 VKHVTVIGGGLMGAGIAQVAAA--TGHTVVLVDQT 47 (302)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCeEEEEECC
Confidence 4689999999999999999999 89999999986
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=91.32 E-value=0.21 Score=46.68 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=30.6
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
+.+|+|+|+|.+|..++..++. .|.+|+++++.
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~--~Ga~V~v~dr~ 199 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVG--LGAQVQIFDIN 199 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCEEEEEeCC
Confidence 4799999999999999999999 89999999976
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=91.31 E-value=0.21 Score=45.81 Aligned_cols=32 Identities=19% Similarity=0.423 Sum_probs=30.0
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
++|+|||+|..|.+.|..|.+ .|.+|++++|.
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~--~g~~V~~~~r~ 34 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAK--TGHCVSVVSRS 34 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHH--TTCEEEEECST
T ss_pred CEEEEECcCHHHHHHHHHHHh--CCCeEEEEeCC
Confidence 589999999999999999999 89999999986
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=91.24 E-value=0.21 Score=45.80 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=29.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKL 47 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~ 47 (388)
+.+|+|||+|..|...|..|.+ .|+ +|+++|+.
T Consensus 4 ~~kI~VIGaG~~G~~ia~~la~--~g~~~V~l~D~~ 37 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVGK--DNLADVVLFDIA 37 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--HTCCEEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCceEEEEeCC
Confidence 4689999999999999999998 687 89999976
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=91.21 E-value=0.23 Score=45.30 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=32.4
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
...++|.|||.|..|...|..|.+ .|++|+++|+.+
T Consensus 19 ~~m~~I~iIG~G~mG~~~A~~l~~--~G~~V~~~dr~~ 54 (310)
T 3doj_A 19 SHMMEVGFLGLGIMGKAMSMNLLK--NGFKVTVWNRTL 54 (310)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSG
T ss_pred ccCCEEEEECccHHHHHHHHHHHH--CCCeEEEEeCCH
Confidence 345789999999999999999999 899999999874
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=91.13 E-value=0.18 Score=47.25 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=31.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~ 47 (388)
....+|+|+|+|.+|..+|..|.. .|. +|+++|+.
T Consensus 190 l~~~kVVv~GAGaAG~~iAkll~~--~G~~~I~v~Dr~ 225 (388)
T 1vl6_A 190 IEEVKVVVNGIGAAGYNIVKFLLD--LGVKNVVAVDRK 225 (388)
T ss_dssp TTTCEEEEECCSHHHHHHHHHHHH--HTCCEEEEEETT
T ss_pred CCCcEEEEECCCHHHHHHHHHHHh--CCCCeEEEEECC
Confidence 456899999999999999999999 787 79999987
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=91.04 E-value=0.25 Score=45.56 Aligned_cols=32 Identities=22% Similarity=0.552 Sum_probs=29.7
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
++|+|||+|..|...|..|.+ .|.+|+++++.
T Consensus 4 mkI~IiGaG~~G~~~a~~L~~--~g~~V~~~~r~ 35 (335)
T 3ghy_A 4 TRICIVGAGAVGGYLGARLAL--AGEAINVLARG 35 (335)
T ss_dssp CCEEEESCCHHHHHHHHHHHH--TTCCEEEECCH
T ss_pred CEEEEECcCHHHHHHHHHHHH--CCCEEEEEECh
Confidence 589999999999999999999 89999999864
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=90.92 E-value=0.25 Score=45.21 Aligned_cols=35 Identities=31% Similarity=0.344 Sum_probs=30.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
...+|+|||+|..|..-|..++. .|++|+++|..+
T Consensus 5 ~~~~VaViGaG~MG~giA~~~a~--~G~~V~l~D~~~ 39 (319)
T 3ado_A 5 AAGDVLIVGSGLVGRSWAMLFAS--GGFRVKLYDIEP 39 (319)
T ss_dssp --CEEEEECCSHHHHHHHHHHHH--TTCCEEEECSCH
T ss_pred CCCeEEEECCcHHHHHHHHHHHh--CCCeEEEEECCH
Confidence 34689999999999999999999 899999999763
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=90.84 E-value=0.26 Score=44.06 Aligned_cols=33 Identities=18% Similarity=0.375 Sum_probs=30.3
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
+|.|||+|..|...|..|.+ .|.+|+++++.+.
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~--~g~~V~~~~r~~~ 34 (291)
T 1ks9_A 2 KITVLGCGALGQLWLTALCK--QGHEVQGWLRVPQ 34 (291)
T ss_dssp EEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCC
T ss_pred eEEEECcCHHHHHHHHHHHh--CCCCEEEEEcCcc
Confidence 69999999999999999999 8999999998743
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=90.80 E-value=0.31 Score=47.65 Aligned_cols=73 Identities=16% Similarity=0.110 Sum_probs=49.7
Q ss_pred CCCCcEEEECccHHHHH-HHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEE
Q psy4525 11 QLKPNVCIVGSGPAGFY-CAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICL 89 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~-aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v 89 (388)
...++|.|||.|-+|++ +|..|.+ .|++|++.|.... | . .+.++..|+.+..+..
T Consensus 20 ~~~~~v~viGiG~sG~s~~A~~l~~--~G~~V~~~D~~~~----------~-------~----~~~l~~~gi~~~~g~~- 75 (494)
T 4hv4_A 20 RRVRHIHFVGIGGAGMGGIAEVLAN--EGYQISGSDLAPN----------S-------V----TQHLTALGAQIYFHHR- 75 (494)
T ss_dssp --CCEEEEETTTSTTHHHHHHHHHH--TTCEEEEECSSCC----------H-------H----HHHHHHTTCEEESSCC-
T ss_pred ccCCEEEEEEEcHhhHHHHHHHHHh--CCCeEEEEECCCC----------H-------H----HHHHHHCCCEEECCCC-
Confidence 34589999999999997 6999999 8999999996521 0 1 1224445787765421
Q ss_pred EEEeeecccccccCEEEEeeCCCC
Q psy4525 90 GQDISLGDLTNAYHAVVLTYGADN 113 (388)
Q Consensus 90 ~~~~~~~~~~~~yd~lvlAtG~~~ 113 (388)
. +....+|.||++.|..+
T Consensus 76 -----~-~~~~~~d~vV~Spgi~~ 93 (494)
T 4hv4_A 76 -----P-ENVLDASVVVVSTAISA 93 (494)
T ss_dssp -----G-GGGTTCSEEEECTTSCT
T ss_pred -----H-HHcCCCCEEEECCCCCC
Confidence 1 11135899999998654
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=90.73 E-value=0.25 Score=45.78 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=29.8
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
.+|.|||+|..|...|..|.+ .|.+|+++++.
T Consensus 5 mki~iiG~G~~G~~~a~~L~~--~g~~V~~~~r~ 36 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLAL--KGQSVLAWDID 36 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred CeEEEECCCHHHHHHHHHHHh--CCCEEEEEeCC
Confidence 589999999999999999999 89999999876
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=90.58 E-value=0.32 Score=44.70 Aligned_cols=33 Identities=27% Similarity=0.426 Sum_probs=29.6
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKL 47 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~ 47 (388)
..+|+|||+|..|..+|..|.. .++ +|+++|..
T Consensus 4 ~~kI~VIGaG~vG~~ia~~la~--~g~~~v~L~Di~ 37 (322)
T 1t2d_A 4 KAKIVLVGSGMIGGVMATLIVQ--KNLGDVVLFDIV 37 (322)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEeCC
Confidence 4689999999999999999999 776 89999976
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=90.53 E-value=0.31 Score=41.84 Aligned_cols=34 Identities=24% Similarity=0.220 Sum_probs=29.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
..++|.|||+|..|...|..|.+ .|.+|++++++
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~--~g~~V~~~~r~ 60 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVG--SGFKVVVGSRN 60 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHH--TTCCEEEEESS
T ss_pred CCCEEEEEccCHHHHHHHHHHHH--CCCEEEEEeCC
Confidence 44689999999999999999998 78999999876
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=90.37 E-value=0.29 Score=46.03 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=31.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
.+++|+|||+|..|..+|..++. .|.+|+++|+.
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~--~Ga~V~~~d~~ 200 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANG--MGATVTVLDIN 200 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEeCC
Confidence 46899999999999999999999 89999999976
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=90.31 E-value=0.28 Score=45.29 Aligned_cols=33 Identities=21% Similarity=0.290 Sum_probs=29.7
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKL 47 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~ 47 (388)
+.+|+|||+|..|..+|..|.. .++ +|+++|..
T Consensus 9 ~~kI~VIGaG~vG~~lA~~la~--~g~~~V~L~D~~ 42 (331)
T 1pzg_A 9 RKKVAMIGSGMIGGTMGYLCAL--RELADVVLYDVV 42 (331)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--HTCCEEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEECC
Confidence 3689999999999999999998 676 89999976
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=90.30 E-value=0.28 Score=44.41 Aligned_cols=32 Identities=16% Similarity=0.291 Sum_probs=29.8
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
.+|.|||+|..|...|..|.+ .|.+|++++++
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~--~g~~V~~~~r~ 35 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQ--GGNDVTLIDQW 35 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred CeEEEECcCHHHHHHHHHHHh--CCCcEEEEECC
Confidence 489999999999999999999 89999999976
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=90.26 E-value=0.3 Score=45.76 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=31.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
.+++|+|+|+|..|..+|..++. .|.+|+++|+.
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~--~Ga~V~~~d~~ 198 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALG--MGAQVTILDVN 198 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CCCEEEEEECC
Confidence 45899999999999999999999 89999999976
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=90.20 E-value=0.24 Score=45.15 Aligned_cols=32 Identities=22% Similarity=0.449 Sum_probs=29.3
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
++|+|||+|..|.+.|..|.+ .|.+|++++|+
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~--~g~~V~~~~r~ 34 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQR--SGEDVHFLLRR 34 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHH--TSCCEEEECST
T ss_pred CEEEEECcCHHHHHHHHHHHH--CCCeEEEEEcC
Confidence 589999999999999999999 89999999976
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=90.08 E-value=0.25 Score=43.58 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=30.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKLP 48 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~~ 48 (388)
..+|+|||+|..|..+|..|.+ .|. +++++|+..
T Consensus 31 ~~~VlVvG~Gg~G~~va~~La~--~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 31 DSRVLIVGLGGLGCAASQYLAS--AGVGNLTLLDFDT 65 (249)
T ss_dssp HCEEEEECCSHHHHHHHHHHHH--HTCSEEEEECCCB
T ss_pred CCeEEEEeeCHHHHHHHHHHHH--cCCCeEEEEcCCC
Confidence 4689999999999999999999 787 899999874
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=90.05 E-value=0.37 Score=42.97 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=31.0
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
.++++|||+|-+|.+++..|.+ .|.+|++++|.
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~--~G~~v~V~nRt 150 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKK--QGLQVSVLNRS 150 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCC
Confidence 6899999999999999999999 88999999987
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=89.93 E-value=0.37 Score=44.34 Aligned_cols=33 Identities=18% Similarity=0.367 Sum_probs=29.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKL 47 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~ 47 (388)
+.+|+|||+|..|...|..+.. .|+ +|+++|..
T Consensus 14 ~~kI~ViGaG~vG~~iA~~la~--~g~~~V~L~Di~ 47 (328)
T 2hjr_A 14 RKKISIIGAGQIGSTIALLLGQ--KDLGDVYMFDII 47 (328)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEECC
Confidence 3689999999999999999999 787 89999976
|
| >4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* | Back alignment and structure |
|---|
Probab=89.81 E-value=0.21 Score=48.63 Aligned_cols=42 Identities=12% Similarity=-0.043 Sum_probs=29.4
Q ss_pred CCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccc
Q psy4525 268 NCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIG 321 (388)
Q Consensus 268 ~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G 321 (388)
+.+.|+++++++.+++|..++ +. +. ..+|+++.||.||+++-
T Consensus 232 l~~~g~~i~~~~~V~~I~~~~-~~---v~--------~~~G~~~~ad~vI~t~P 273 (513)
T 4gde_A 232 LPKEKTRFGEKGKVTKVNANN-KT---VT--------LQDGTTIGYKKLVSTMA 273 (513)
T ss_dssp SCGGGEEESGGGCEEEEETTT-TE---EE--------ETTSCEEEEEEEEECSC
T ss_pred HHhcCeeeecceEEEEEEccC-CE---EE--------EcCCCEEECCEEEECCC
Confidence 456678888888888887543 22 22 34567899999998864
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=89.72 E-value=0.43 Score=42.49 Aligned_cols=35 Identities=17% Similarity=0.233 Sum_probs=31.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
+++|+|.|+|..|..++..|.+ .|.+|+++.|...
T Consensus 3 ~~~ilVtGaG~iG~~l~~~L~~--~g~~V~~~~r~~~ 37 (286)
T 3gpi_A 3 LSKILIAGCGDLGLELARRLTA--QGHEVTGLRRSAQ 37 (286)
T ss_dssp CCCEEEECCSHHHHHHHHHHHH--TTCCEEEEECTTS
T ss_pred CCcEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCcc
Confidence 4689999999999999999999 8999999998743
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=89.56 E-value=0.39 Score=42.84 Aligned_cols=34 Identities=18% Similarity=0.212 Sum_probs=31.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
..++++|+|+|-+|..+|..|.+ .|.+|++++|.
T Consensus 118 ~~k~vlViGaGg~g~a~a~~L~~--~G~~V~v~~R~ 151 (271)
T 1nyt_A 118 PGLRILLIGAGGASRGVLLPLLS--LDCAVTITNRT 151 (271)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSS
T ss_pred CCCEEEEECCcHHHHHHHHHHHH--cCCEEEEEECC
Confidence 45789999999999999999999 88999999876
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=89.51 E-value=0.48 Score=44.44 Aligned_cols=37 Identities=22% Similarity=0.244 Sum_probs=33.0
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
...++|.|||+|..|..++..+++ .|++|+++|..+.
T Consensus 10 ~~~~~IlIlG~G~lg~~la~aa~~--lG~~viv~d~~~~ 46 (377)
T 3orq_A 10 KFGATIGIIGGGQLGKMMAQSAQK--MGYKVVVLDPSED 46 (377)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCTT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEECCCC
Confidence 456899999999999999999999 8999999997644
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=89.48 E-value=0.47 Score=44.66 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=33.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
...++|+|||+|..|..++..+++ .|++|+++|..+.
T Consensus 12 ~~~k~IlIlG~G~~g~~la~aa~~--~G~~vi~~d~~~~ 48 (389)
T 3q2o_A 12 LPGKTIGIIGGGQLGRMMALAAKE--MGYKIAVLDPTKN 48 (389)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSTT
T ss_pred CCCCEEEEECCCHHHHHHHHHHHH--cCCEEEEEeCCCC
Confidence 456899999999999999999999 8999999997643
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=89.39 E-value=0.36 Score=46.96 Aligned_cols=35 Identities=20% Similarity=0.185 Sum_probs=31.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
...+|.|||+|..|+..|..|++ .|++|+++|+++
T Consensus 7 ~~~~I~VIG~G~vG~~lA~~la~--~G~~V~~~d~~~ 41 (478)
T 2y0c_A 7 GSMNLTIIGSGSVGLVTGACLAD--IGHDVFCLDVDQ 41 (478)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred CCceEEEECcCHHHHHHHHHHHh--CCCEEEEEECCH
Confidence 34799999999999999999999 899999999864
|
| >3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.37 E-value=0.31 Score=46.95 Aligned_cols=43 Identities=9% Similarity=0.033 Sum_probs=30.1
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEcccc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
+.|+++++++.|++|..++++ +..+. + ++.++.||.||+|++.
T Consensus 246 ~~g~~i~~~~~V~~i~~~~~~-~~~v~--------~-~~~~~~ad~vv~a~p~ 288 (477)
T 3nks_A 246 SRGVSVLRGQPVCGLSLQAEG-RWKVS--------L-RDSSLEADHVISAIPA 288 (477)
T ss_dssp HTTCEEECSCCCCEEEECGGG-CEEEE--------C-SSCEEEESEEEECSCH
T ss_pred hcCCEEEeCCEEEEEEEcCCc-eEEEE--------E-CCeEEEcCEEEECCCH
Confidence 347899999999999865433 22332 2 2336999999999975
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=89.30 E-value=0.4 Score=43.90 Aligned_cols=34 Identities=21% Similarity=0.320 Sum_probs=29.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC--cEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQS--TVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~--~v~lie~~ 47 (388)
++.+|+|||+|..|.++|..|.. .+. +++++|..
T Consensus 6 ~~~KI~IiGaG~vG~~~a~~l~~--~~~~~ev~L~Di~ 41 (318)
T 1y6j_A 6 SRSKVAIIGAGFVGASAAFTMAL--RQTANELVLIDVF 41 (318)
T ss_dssp -CCCEEEECCSHHHHHHHHHHHH--TTCSSEEEEECCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CCCCCEEEEEeCC
Confidence 34689999999999999999998 665 89999975
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=89.25 E-value=0.33 Score=43.91 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=31.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
.++|.|||.|..|...|..|.+ .|++|+++|+++.
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~--~G~~V~~~dr~~~ 49 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTE--WPGGVTVYDIRIE 49 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTT--STTCEEEECSSTT
T ss_pred CCeEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCHH
Confidence 4689999999999999999999 8999999998743
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=89.22 E-value=0.42 Score=41.85 Aligned_cols=36 Identities=19% Similarity=0.246 Sum_probs=31.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
...++|.|||+|..|...|..|.+ .|++|+++++.+
T Consensus 17 ~~~~kIgiIG~G~mG~alA~~L~~--~G~~V~~~~r~~ 52 (245)
T 3dtt_A 17 FQGMKIAVLGTGTVGRTMAGALAD--LGHEVTIGTRDP 52 (245)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESCH
T ss_pred cCCCeEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCh
Confidence 346899999999999999999999 899999999873
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=89.14 E-value=0.39 Score=43.66 Aligned_cols=31 Identities=23% Similarity=0.286 Sum_probs=28.5
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCC--cEEEEcCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQS--TVDIYEKL 47 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~--~v~lie~~ 47 (388)
+|+|||+|..|.+.|..|.. .+. +|+++|..
T Consensus 2 kI~VIGaG~vG~~la~~la~--~g~~~eV~L~D~~ 34 (304)
T 2v6b_A 2 KVGVVGTGFVGSTAAFALVL--RGSCSELVLVDRD 34 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHH--TTCCSEEEEECSS
T ss_pred EEEEECCCHHHHHHHHHHHh--CCCCCEEEEEeCC
Confidence 79999999999999999998 787 89999975
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=89.13 E-value=0.5 Score=45.57 Aligned_cols=35 Identities=17% Similarity=0.031 Sum_probs=31.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
..++|.|||+|.-|...|..+++ .|++|+++|+++
T Consensus 53 ~i~kVaVIGaG~MG~~IA~~la~--aG~~V~l~D~~~ 87 (460)
T 3k6j_A 53 DVNSVAIIGGGTMGKAMAICFGL--AGIETFLVVRNE 87 (460)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred cCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEECcH
Confidence 34789999999999999999999 899999999874
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=89.11 E-value=0.42 Score=45.48 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=31.3
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
..+|+|||.|..|...|..|.+ .|.+|+++|+++
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~--~g~~vvvId~d~ 37 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLS--SGVKMVVLDHDP 37 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH--TTCCEEEEECCH
T ss_pred CCeEEEECCCHHHHHHHHHHHH--CCCCEEEEECCH
Confidence 4579999999999999999999 899999999874
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=89.09 E-value=0.37 Score=46.43 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=31.2
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
.+|.|||+|..|+..|..|.+ .|++|+++|+++.
T Consensus 3 mkI~VIG~G~vG~~lA~~La~--~G~~V~~~D~~~~ 36 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAE--LGANVRCIDTDRN 36 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCHH
T ss_pred CEEEEECcCHHHHHHHHHHHh--cCCEEEEEECCHH
Confidence 489999999999999999999 8999999998743
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=89.04 E-value=0.37 Score=46.80 Aligned_cols=36 Identities=14% Similarity=0.099 Sum_probs=32.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCC-CC-cEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLP-QS-TVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~-g~-~v~lie~~~~ 49 (388)
..++|.|||+|.-|+..|..|++ . |+ +|+++|+++.
T Consensus 17 ~~mkIaVIGlG~mG~~lA~~la~--~~G~~~V~~~D~~~~ 54 (478)
T 3g79_A 17 PIKKIGVLGMGYVGIPAAVLFAD--APCFEKVLGFQRNSK 54 (478)
T ss_dssp SCCEEEEECCSTTHHHHHHHHHH--STTCCEEEEECCCCT
T ss_pred CCCEEEEECcCHHHHHHHHHHHH--hCCCCeEEEEECChh
Confidence 45689999999999999999999 7 99 9999998865
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=89.03 E-value=0.4 Score=43.04 Aligned_cols=33 Identities=24% Similarity=0.458 Sum_probs=30.6
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
++|.|||.|..|...|..|.+ .|++|+++++++
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~--~G~~V~~~dr~~ 34 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVK--AGCSVTIWNRSP 34 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSG
T ss_pred CEEEEEeecHHHHHHHHHHHH--CCCeEEEEcCCH
Confidence 589999999999999999999 899999999873
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=89.03 E-value=0.44 Score=43.56 Aligned_cols=34 Identities=18% Similarity=0.240 Sum_probs=30.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~ 47 (388)
..++|+|||+|..|..+|..+.. .+. +++++|..
T Consensus 7 ~~~kv~ViGaG~vG~~ia~~l~~--~g~~~v~l~D~~ 41 (315)
T 3tl2_A 7 KRKKVSVIGAGFTGATTAFLLAQ--KELADVVLVDIP 41 (315)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--TTCCEEEEECCG
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEecc
Confidence 34689999999999999999999 788 99999976
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=89.02 E-value=0.48 Score=44.13 Aligned_cols=33 Identities=21% Similarity=0.305 Sum_probs=30.7
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
..+|.|||+|.-|.+.|..|.+ .|.+|++++++
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~--~G~~V~l~~r~ 61 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLAR--KGQKVRLWSYE 61 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHT--TTCCEEEECSC
T ss_pred CCeEEEECccHHHHHHHHHHHH--CCCeEEEEeCC
Confidence 4689999999999999999999 89999999986
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=89.02 E-value=0.43 Score=43.26 Aligned_cols=34 Identities=12% Similarity=0.211 Sum_probs=30.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~ 47 (388)
..++++|||+|.+|..+|..|.+ .|. +|++++|.
T Consensus 140 ~~~~vlVlGaGg~g~aia~~L~~--~G~~~V~v~nR~ 174 (297)
T 2egg_A 140 DGKRILVIGAGGGARGIYFSLLS--TAAERIDMANRT 174 (297)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHT--TTCSEEEEECSS
T ss_pred CCCEEEEECcHHHHHHHHHHHHH--CCCCEEEEEeCC
Confidence 45799999999999999999999 897 89999976
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=88.96 E-value=0.44 Score=43.20 Aligned_cols=33 Identities=24% Similarity=0.167 Sum_probs=30.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
.++|.|||.|..|...|..|.+ .|++|+++|++
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~--~G~~V~~~dr~ 39 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLR--AGLSTWGADLN 39 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred CCeEEEECCCHHHHHHHHHHHH--CCCeEEEEECC
Confidence 4689999999999999999999 89999999976
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=88.96 E-value=0.48 Score=43.47 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=30.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~ 47 (388)
...+|+|||+|..|.++|..|.. .+. +++++|..
T Consensus 6 ~~~kI~viGaG~vG~~~a~~l~~--~~~~~v~L~Di~ 40 (324)
T 3gvi_A 6 ARNKIALIGSGMIGGTLAHLAGL--KELGDVVLFDIA 40 (324)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSS
T ss_pred cCCEEEEECCCHHHHHHHHHHHh--CCCCeEEEEeCC
Confidence 45689999999999999999998 677 99999976
|
| >3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=88.80 E-value=0.32 Score=46.18 Aligned_cols=42 Identities=12% Similarity=0.218 Sum_probs=32.0
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
+.|+++++++.++++..++ +.+ +. .+++++.||.||+|+|..
T Consensus 201 ~~G~~i~~~~~V~~i~~~~-~~v--V~---------~~g~~~~ad~Vv~a~~~~ 242 (421)
T 3nrn_A 201 ENKGKILTRKEVVEINIEE-KKV--YT---------RDNEEYSFDVAISNVGVR 242 (421)
T ss_dssp TTTCEEESSCCEEEEETTT-TEE--EE---------TTCCEEECSEEEECSCHH
T ss_pred HCCCEEEcCCeEEEEEEEC-CEE--EE---------eCCcEEEeCEEEECCCHH
Confidence 5689999999999998643 444 31 234579999999999964
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=88.76 E-value=0.54 Score=43.12 Aligned_cols=34 Identities=24% Similarity=0.315 Sum_probs=29.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~ 47 (388)
...+|+|||+|..|.++|..|.. .+. +++++|..
T Consensus 4 ~~~kI~iiGaG~vG~~~a~~l~~--~~~~~v~l~Di~ 38 (321)
T 3p7m_A 4 ARKKITLVGAGNIGGTLAHLALI--KQLGDVVLFDIA 38 (321)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CCCceEEEEeCC
Confidence 34689999999999999999998 666 99999976
|
| >2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A* | Back alignment and structure |
|---|
Probab=88.73 E-value=0.3 Score=47.45 Aligned_cols=21 Identities=24% Similarity=0.409 Sum_probs=19.3
Q ss_pred CCeEEEEcCChHHHHHHHHhc
Q psy4525 152 CEEATILGQGNVAMDVARILL 172 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~ 172 (388)
.++|+|||+|.+|+.+|..|+
T Consensus 33 ~~~v~IiGaG~~Gl~aA~~l~ 53 (498)
T 2iid_A 33 PKHVVIVGAGMAGLSAAYVLA 53 (498)
T ss_dssp CCEEEEECCBHHHHHHHHHHH
T ss_pred CCCEEEECCCHHHHHHHHHHH
Confidence 578999999999999999886
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=88.69 E-value=0.47 Score=42.82 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=31.6
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
...++|.|||+|..|..+|..++. .|.+|+++++.
T Consensus 153 l~g~~v~IiG~G~iG~~~a~~l~~--~G~~V~~~dr~ 187 (293)
T 3d4o_A 153 IHGANVAVLGLGRVGMSVARKFAA--LGAKVKVGARE 187 (293)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESS
T ss_pred CCCCEEEEEeeCHHHHHHHHHHHh--CCCEEEEEECC
Confidence 356899999999999999999998 89999999975
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=88.61 E-value=0.47 Score=42.97 Aligned_cols=35 Identities=17% Similarity=0.251 Sum_probs=31.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
...++|.|||+|..|..+|..+.. .|.+|+++++.
T Consensus 155 l~g~~v~IiG~G~iG~~~a~~l~~--~G~~V~~~d~~ 189 (300)
T 2rir_A 155 IHGSQVAVLGLGRTGMTIARTFAA--LGANVKVGARS 189 (300)
T ss_dssp STTSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESS
T ss_pred CCCCEEEEEcccHHHHHHHHHHHH--CCCEEEEEECC
Confidence 356899999999999999999998 89999999975
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=88.58 E-value=0.4 Score=45.60 Aligned_cols=36 Identities=25% Similarity=0.240 Sum_probs=32.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
...++|+|||.|+.|..+|..++. .|.+|+++|+.+
T Consensus 218 L~GktV~ViG~G~IGk~vA~~Lra--~Ga~Viv~D~dp 253 (435)
T 3gvp_A 218 FGGKQVVVCGYGEVGKGCCAALKA--MGSIVYVTEIDP 253 (435)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred ecCCEEEEEeeCHHHHHHHHHHHH--CCCEEEEEeCCh
Confidence 356899999999999999999999 899999999763
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=88.57 E-value=0.48 Score=45.84 Aligned_cols=34 Identities=21% Similarity=0.108 Sum_probs=31.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
..++|.|||+|..|...|..+.+ .|++|+++|++
T Consensus 36 ~~~kV~VIGaG~MG~~iA~~la~--~G~~V~l~D~~ 69 (463)
T 1zcj_A 36 PVSSVGVLGLGTMGRGIAISFAR--VGISVVAVESD 69 (463)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHT--TTCEEEEECSS
T ss_pred CCCEEEEECcCHHHHHHHHHHHh--CCCeEEEEECC
Confidence 34689999999999999999999 89999999976
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=88.43 E-value=0.34 Score=43.73 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=30.2
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
++|+|||+|.-|.+.|..|.+ .|.+|++++|+.
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~--~g~~V~~~~r~~ 35 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQ--SLPHTTLIGRHA 35 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHH--HCTTCEEEESSC
T ss_pred cEEEEECCCHHHHHHHHHHHH--CCCeEEEEEecc
Confidence 589999999999999999998 789999999873
|
| >3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=88.41 E-value=0.32 Score=46.01 Aligned_cols=44 Identities=11% Similarity=0.156 Sum_probs=34.3
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
+.|+++++++.+++|..+ ++++.++.. . ++++.||.||+|+|..
T Consensus 208 ~~G~~i~~~~~V~~i~~~-~~~~~gv~~--------~-g~~~~ad~VV~a~~~~ 251 (425)
T 3ka7_A 208 ANGGKIHTGQEVSKILIE-NGKAAGIIA--------D-DRIHDADLVISNLGHA 251 (425)
T ss_dssp HTTCEEECSCCEEEEEEE-TTEEEEEEE--------T-TEEEECSEEEECSCHH
T ss_pred HcCCEEEECCceeEEEEE-CCEEEEEEE--------C-CEEEECCEEEECCCHH
Confidence 457899999999999875 356666643 2 4579999999999864
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=88.36 E-value=0.46 Score=45.68 Aligned_cols=37 Identities=14% Similarity=0.117 Sum_probs=33.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
...++.|||.|.-|+..|..|.+ .|++|+++|+++..
T Consensus 7 ~~~~~~vIGlG~vG~~~A~~La~--~G~~V~~~D~~~~k 43 (446)
T 4a7p_A 7 GSVRIAMIGTGYVGLVSGACFSD--FGHEVVCVDKDARK 43 (446)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCSTT
T ss_pred CceEEEEEcCCHHHHHHHHHHHH--CCCEEEEEeCCHHH
Confidence 34789999999999999999999 89999999998654
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=88.29 E-value=0.74 Score=41.61 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=30.8
Q ss_pred CCcEEEEC-ccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 13 KPNVCIVG-SGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 13 ~~~vvIIG-aG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
.++|.||| +|..|.+.|..|.+ .|.+|+++++.+
T Consensus 21 ~~~I~iIGg~G~mG~~la~~l~~--~G~~V~~~~~~~ 55 (298)
T 2pv7_A 21 IHKIVIVGGYGKLGGLFARYLRA--SGYPISILDRED 55 (298)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHT--TTCCEEEECTTC
T ss_pred CCEEEEEcCCCHHHHHHHHHHHh--CCCeEEEEECCc
Confidence 35899999 99999999999999 899999999764
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=88.28 E-value=0.49 Score=43.50 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=30.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
.+.+|.|||+|.-|...|..|.+ .|.+|+++++.
T Consensus 13 ~~~kI~iIG~G~mG~ala~~L~~--~G~~V~~~~r~ 46 (335)
T 1z82_A 13 MEMRFFVLGAGSWGTVFAQMLHE--NGEEVILWARR 46 (335)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSS
T ss_pred cCCcEEEECcCHHHHHHHHHHHh--CCCeEEEEeCC
Confidence 46799999999999999999999 89999999976
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=88.13 E-value=0.56 Score=42.72 Aligned_cols=33 Identities=12% Similarity=0.275 Sum_probs=28.8
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
+|+|||+|..|...|..|.+...+.+|+++|+.
T Consensus 2 kI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~ 34 (310)
T 1guz_A 2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVV 34 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 799999999999999999983236899999986
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=88.11 E-value=0.48 Score=43.54 Aligned_cols=34 Identities=15% Similarity=0.201 Sum_probs=29.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC--cEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQS--TVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~--~v~lie~~ 47 (388)
...+|+|||+|..|.++|..|.. .+. +++++|..
T Consensus 4 ~~~kI~ViGaG~vG~~~a~~l~~--~~~~~~l~l~D~~ 39 (326)
T 3pqe_A 4 HVNKVALIGAGFVGSSYAFALIN--QGITDELVVIDVN 39 (326)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHH--HTCCSEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CCCCceEEEEecc
Confidence 34689999999999999999998 565 89999964
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=88.09 E-value=0.41 Score=45.89 Aligned_cols=48 Identities=19% Similarity=0.128 Sum_probs=37.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPD 61 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~ 61 (388)
.+.+|+|||.|..|+.+|..+++ .|++|+.||-++.--..++.|..|-
T Consensus 20 ~m~~IaViGlGYVGLp~A~~~A~--~G~~V~g~Did~~kV~~ln~G~~pi 67 (444)
T 3vtf_A 20 HMASLSVLGLGYVGVVHAVGFAL--LGHRVVGYDVNPSIVERLRAGRPHI 67 (444)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--HTCEEEEECSCHHHHHHHHTTCCSS
T ss_pred CCCEEEEEccCHHHHHHHHHHHh--CCCcEEEEECCHHHHHHHHCCCCCC
Confidence 45799999999999999999998 7999999997654323344444343
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.01 E-value=0.32 Score=41.82 Aligned_cols=33 Identities=21% Similarity=0.236 Sum_probs=29.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEE-EcCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDI-YEKL 47 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~l-ie~~ 47 (388)
..+|.|||+|..|...|..|.+ .|.+|++ ++++
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~--~g~~V~~v~~r~ 56 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTA--AQIPAIIANSRG 56 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHH--TTCCEEEECTTC
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCEEEEEECCC
Confidence 4689999999999999999999 8999998 7776
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=87.92 E-value=0.2 Score=47.03 Aligned_cols=35 Identities=14% Similarity=0.165 Sum_probs=30.7
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCC-------CcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQ-------STVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g-------~~v~lie~~~~ 49 (388)
.++|.|||+|..|.+.|..|.+ .| .+|+++++.+.
T Consensus 21 ~~kI~iIGaG~mG~alA~~L~~--~G~~~~~~~~~V~~~~r~~~ 62 (375)
T 1yj8_A 21 PLKISILGSGNWASAISKVVGT--NAKNNYLFENEVRMWIRDEF 62 (375)
T ss_dssp CBCEEEECCSHHHHHHHHHHHH--HHHHCTTBCSCEEEECCSCC
T ss_pred CCEEEEECcCHHHHHHHHHHHH--cCCccCCCCCeEEEEECChh
Confidence 3589999999999999999998 67 89999998743
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.75 E-value=0.65 Score=42.23 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=30.3
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
..+|.|||+|..|...|..|.+ .|.+|+++++.
T Consensus 30 ~~~I~iIG~G~mG~~~a~~l~~--~g~~V~~~~~~ 62 (316)
T 2uyy_A 30 DKKIGFLGLGLMGSGIVSNLLK--MGHTVTVWNRT 62 (316)
T ss_dssp SSCEEEECCSHHHHHHHHHHHH--TTCCEEEECSS
T ss_pred CCeEEEEcccHHHHHHHHHHHh--CCCEEEEEeCC
Confidence 3689999999999999999998 89999999976
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=87.70 E-value=0.42 Score=42.64 Aligned_cols=34 Identities=21% Similarity=0.257 Sum_probs=31.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
..++++|+|+|-+|.+.|..|.+ .|.+|++++|.
T Consensus 118 ~~~~vlvlGaGg~g~a~a~~L~~--~G~~v~v~~R~ 151 (272)
T 1p77_A 118 PNQHVLILGAGGATKGVLLPLLQ--AQQNIVLANRT 151 (272)
T ss_dssp TTCEEEEECCSHHHHTTHHHHHH--TTCEEEEEESS
T ss_pred CCCEEEEECCcHHHHHHHHHHHH--CCCEEEEEECC
Confidence 45789999999999999999999 78999999986
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=87.52 E-value=0.75 Score=41.74 Aligned_cols=35 Identities=31% Similarity=0.547 Sum_probs=31.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
..++|.|||.|..|...|..|.+ .|++|+++|+.+
T Consensus 8 ~~~~IgiIG~G~mG~~~A~~l~~--~G~~V~~~dr~~ 42 (306)
T 3l6d_A 8 FEFDVSVIGLGAMGTIMAQVLLK--QGKRVAIWNRSP 42 (306)
T ss_dssp CSCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSH
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--CCCEEEEEeCCH
Confidence 45789999999999999999999 899999999874
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=87.43 E-value=0.52 Score=43.11 Aligned_cols=33 Identities=12% Similarity=0.425 Sum_probs=30.7
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
.++|.|||.|..|...|..|.+ .|++|+++|+.
T Consensus 31 ~~~I~iIG~G~mG~~~a~~l~~--~G~~V~~~dr~ 63 (320)
T 4dll_A 31 ARKITFLGTGSMGLPMARRLCE--AGYALQVWNRT 63 (320)
T ss_dssp CSEEEEECCTTTHHHHHHHHHH--TTCEEEEECSC
T ss_pred CCEEEEECccHHHHHHHHHHHh--CCCeEEEEcCC
Confidence 4689999999999999999999 89999999976
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=87.39 E-value=0.7 Score=42.52 Aligned_cols=35 Identities=23% Similarity=0.470 Sum_probs=30.2
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCC--cEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQS--TVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~--~v~lie~~ 47 (388)
....+|+|||+|..|.+.|..+.. .+. +++++|..
T Consensus 17 ~~~~kV~ViGaG~vG~~~a~~l~~--~~~~~el~L~Di~ 53 (331)
T 4aj2_A 17 VPQNKITVVGVGAVGMACAISILM--KDLADELALVDVI 53 (331)
T ss_dssp CCSSEEEEECCSHHHHHHHHHHHH--TTCCSEEEEECSC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHh--CCCCceEEEEeCC
Confidence 456899999999999999999998 665 89999964
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=87.37 E-value=0.61 Score=37.49 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=29.1
Q ss_pred cCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecC
Q psy4525 148 LSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRG 206 (388)
Q Consensus 148 ~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~ 206 (388)
....+++|+|+|+|.+|..+|..|. ..+. +|+++.|++
T Consensus 15 ~~~~~~~v~IiG~G~iG~~la~~L~--------------------~~g~-~V~vid~~~ 52 (155)
T 2g1u_A 15 KKQKSKYIVIFGCGRLGSLIANLAS--------------------SSGH-SVVVVDKNE 52 (155)
T ss_dssp --CCCCEEEEECCSHHHHHHHHHHH--------------------HTTC-EEEEEESCG
T ss_pred cccCCCcEEEECCCHHHHHHHHHHH--------------------hCCC-eEEEEECCH
Confidence 3445789999999999999999775 3443 799988764
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=87.37 E-value=0.58 Score=41.79 Aligned_cols=37 Identities=19% Similarity=0.274 Sum_probs=29.9
Q ss_pred CCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecC
Q psy4525 149 SLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRG 206 (388)
Q Consensus 149 ~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~ 206 (388)
..++++|+|||||.+|...+..|. +.|+ +|+++....
T Consensus 10 ~l~~k~VLVVGgG~va~rka~~Ll--------------------~~Ga-~VtViap~~ 46 (274)
T 1kyq_A 10 QLKDKRILLIGGGEVGLTRLYKLM--------------------PTGC-KLTLVSPDL 46 (274)
T ss_dssp CCTTCEEEEEEESHHHHHHHHHHG--------------------GGTC-EEEEEEEEE
T ss_pred EcCCCEEEEECCcHHHHHHHHHHH--------------------hCCC-EEEEEcCCC
Confidence 346899999999999999999876 3454 699998653
|
| >3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=87.34 E-value=0.36 Score=46.16 Aligned_cols=33 Identities=18% Similarity=0.361 Sum_probs=28.2
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecC
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRG 206 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~ 206 (388)
++|+|||||.+|+-+|..|+ +.|. +|+++.++.
T Consensus 23 ~~ViIVGaGpaGl~~A~~La--------------------~~G~-~V~viE~~~ 55 (430)
T 3ihm_A 23 KRIGIVGAGTAGLHLGLFLR--------------------QHDV-DVTVYTDRK 55 (430)
T ss_dssp CEEEEECCHHHHHHHHHHHH--------------------HTTC-EEEEEESCC
T ss_pred CCEEEECCcHHHHHHHHHHH--------------------HCCC-eEEEEcCCC
Confidence 68999999999999999886 3454 799999876
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=87.32 E-value=0.4 Score=43.03 Aligned_cols=33 Identities=18% Similarity=0.315 Sum_probs=30.3
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
++|.|||.|..|...|..|.+ .|++|+++|+++
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~--~G~~V~~~dr~~ 34 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVR--AGFDVTVWNRNP 34 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHH--HTCCEEEECSSG
T ss_pred CeEEEEccCHHHHHHHHHHHH--CCCeEEEEcCCH
Confidence 479999999999999999999 799999999873
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=87.31 E-value=0.59 Score=42.68 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=28.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
..++|+|||+|.-|.+.|..|.+ .|.+|+++ +.
T Consensus 18 ~~~kI~IiGaGa~G~~~a~~L~~--~G~~V~l~-~~ 50 (318)
T 3hwr_A 18 QGMKVAIMGAGAVGCYYGGMLAR--AGHEVILI-AR 50 (318)
T ss_dssp --CEEEEESCSHHHHHHHHHHHH--TTCEEEEE-CC
T ss_pred cCCcEEEECcCHHHHHHHHHHHH--CCCeEEEE-Ec
Confidence 35789999999999999999999 89999999 55
|
| >3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=87.30 E-value=0.35 Score=45.23 Aligned_cols=35 Identities=14% Similarity=0.255 Sum_probs=28.1
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcC--CCcEEEEEeecCcc
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTS--RIKSVNLVGRRGAL 208 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~--~~~~V~~i~r~~~~ 208 (388)
.+|+|||||.+|+-+|..|+ +. | .+|++++|.+..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~--------------------~~~~G-~~V~v~E~~~~~ 37 (381)
T 3c4a_A 1 MKILVIGAGPAGLVFASQLK--------------------QARPL-WAIDIVEKNDEQ 37 (381)
T ss_dssp CEEEEECCSHHHHHHHHHHH--------------------HHCTT-SEEEEECSSCTT
T ss_pred CeEEEECCCHHHHHHHHHHH--------------------hcCCC-CCEEEEECCCCC
Confidence 36999999999999999886 22 3 479999987654
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=87.29 E-value=0.63 Score=45.02 Aligned_cols=35 Identities=20% Similarity=0.197 Sum_probs=31.8
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
...+.++|+|+|..|..+|..|+. .|.+|+++|+.
T Consensus 263 L~GKtVvVtGaGgIG~aiA~~Laa--~GA~Viv~D~~ 297 (488)
T 3ond_A 263 IAGKVAVVAGYGDVGKGCAAALKQ--AGARVIVTEID 297 (488)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred ccCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEcCC
Confidence 356899999999999999999999 89999999875
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=87.29 E-value=0.51 Score=42.89 Aligned_cols=35 Identities=17% Similarity=0.299 Sum_probs=29.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC--cEEEEcCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQS--TVDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~--~v~lie~~~ 48 (388)
..++|+|||+|..|...|..+.. .+. +++++|...
T Consensus 13 ~~~kV~ViGaG~vG~~~a~~l~~--~g~~~ev~L~Di~~ 49 (303)
T 2i6t_A 13 TVNKITVVGGGELGIACTLAISA--KGIADRLVLLDLSE 49 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHH--HTCCSEEEEECCC-
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--cCCCCEEEEEcCCc
Confidence 45789999999999999999988 666 899999763
|
| >2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* | Back alignment and structure |
|---|
Probab=87.27 E-value=0.41 Score=45.36 Aligned_cols=21 Identities=19% Similarity=0.297 Sum_probs=19.0
Q ss_pred CCeEEEEcCChHHHHHHHHhc
Q psy4525 152 CEEATILGQGNVAMDVARILL 172 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~ 172 (388)
..+|+|||+|.+|+-+|..|+
T Consensus 6 ~~~v~IIGaG~aGl~aA~~L~ 26 (424)
T 2b9w_A 6 DSRIAIIGAGPAGLAAGMYLE 26 (424)
T ss_dssp TCCEEEECCSHHHHHHHHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHH
Confidence 468999999999999999886
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=87.23 E-value=0.64 Score=43.33 Aligned_cols=35 Identities=14% Similarity=0.206 Sum_probs=31.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
..++|.|||.|..|...|..|.+ .|++|+++|+.+
T Consensus 21 ~~mkIgiIGlG~mG~~~A~~L~~--~G~~V~v~dr~~ 55 (358)
T 4e21_A 21 QSMQIGMIGLGRMGADMVRRLRK--GGHECVVYDLNV 55 (358)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred cCCEEEEECchHHHHHHHHHHHh--CCCEEEEEeCCH
Confidence 35789999999999999999999 899999999873
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=87.22 E-value=0.82 Score=44.01 Aligned_cols=36 Identities=17% Similarity=0.238 Sum_probs=28.8
Q ss_pred CCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecC
Q psy4525 150 LDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRG 206 (388)
Q Consensus 150 ~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~ 206 (388)
+.+++|.|||.|.+|+-+|..|. +.| .+|++..++.
T Consensus 7 ~~~k~v~viG~G~sG~s~A~~l~--------------------~~G-~~V~~~D~~~ 42 (451)
T 3lk7_A 7 FENKKVLVLGLARSGEAAARLLA--------------------KLG-AIVTVNDGKP 42 (451)
T ss_dssp TTTCEEEEECCTTTHHHHHHHHH--------------------HTT-CEEEEEESSC
T ss_pred cCCCEEEEEeeCHHHHHHHHHHH--------------------hCC-CEEEEEeCCc
Confidence 45899999999999999988775 345 4699987754
|
| >3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} | Back alignment and structure |
|---|
Probab=87.10 E-value=0.66 Score=36.49 Aligned_cols=35 Identities=23% Similarity=0.204 Sum_probs=27.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEE-EEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVD-IYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~-lie~~ 47 (388)
..++++|||+|..|..++..+.+. ++++++ ++|..
T Consensus 3 ~~~~vlIiGaG~~g~~l~~~l~~~-~g~~vvg~~d~~ 38 (141)
T 3nkl_A 3 AKKKVLIYGAGSAGLQLANMLRQG-KEFHPIAFIDDD 38 (141)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHS-SSEEEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-CCcEEEEEEECC
Confidence 457899999999999999999873 477765 55544
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=87.07 E-value=0.71 Score=41.49 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=30.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~ 47 (388)
..++++|+|+|-+|.+++..|.+ .|. +|++++|.
T Consensus 126 ~~k~vlVlGaGG~g~aia~~L~~--~G~~~v~i~~R~ 160 (283)
T 3jyo_A 126 KLDSVVQVGAGGVGNAVAYALVT--HGVQKLQVADLD 160 (283)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--TTCSEEEEECSS
T ss_pred CCCEEEEECCcHHHHHHHHHHHH--CCCCEEEEEECC
Confidence 46899999999999999999999 898 69999876
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=87.02 E-value=0.74 Score=34.55 Aligned_cols=34 Identities=24% Similarity=0.286 Sum_probs=27.7
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeec
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRR 205 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~ 205 (388)
.++|+|+|+|.+|..++..|. +.+..+|+++.|+
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~--------------------~~g~~~v~~~~r~ 38 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLK--------------------TSSNYSVTVADHD 38 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHH--------------------HCSSEEEEEEESC
T ss_pred cCeEEEECCCHHHHHHHHHHH--------------------hCCCceEEEEeCC
Confidence 468999999999999999775 3454579888886
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=87.02 E-value=0.56 Score=41.68 Aligned_cols=33 Identities=6% Similarity=-0.055 Sum_probs=30.5
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
+++|+|.|+|..|..++..|.+ .|++|+++.|.
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~--~g~~V~~~~r~ 37 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAP--QGWRIIGTSRN 37 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGG--GTCEEEEEESC
T ss_pred cCcEEEECCcHHHHHHHHHHHH--CCCEEEEEEcC
Confidence 3689999999999999999999 79999999886
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=86.99 E-value=0.47 Score=45.47 Aligned_cols=32 Identities=22% Similarity=0.218 Sum_probs=29.8
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
+|.|||+|..|+..|..|.+ .|.+|+++|+++
T Consensus 2 kI~VIG~G~vG~~~A~~la~--~G~~V~~~d~~~ 33 (436)
T 1mv8_A 2 RISIFGLGYVGAVCAGCLSA--RGHEVIGVDVSS 33 (436)
T ss_dssp EEEEECCSTTHHHHHHHHHH--TTCEEEEECSCH
T ss_pred EEEEECCCHHHHHHHHHHHH--CCCEEEEEECCH
Confidence 69999999999999999999 899999999864
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=86.91 E-value=0.63 Score=41.65 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=31.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~~ 48 (388)
..++++|||+|-+|.+++..|.+ .|. +|++++|..
T Consensus 116 ~~k~vlvlGaGg~g~aia~~L~~--~G~~~v~v~~R~~ 151 (277)
T 3don_A 116 EDAYILILGAGGASKGIANELYK--IVRPTLTVANRTM 151 (277)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHT--TCCSCCEEECSCG
T ss_pred CCCEEEEECCcHHHHHHHHHHHH--CCCCEEEEEeCCH
Confidence 35799999999999999999999 898 899999873
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=86.82 E-value=0.8 Score=38.16 Aligned_cols=33 Identities=18% Similarity=0.341 Sum_probs=30.3
Q ss_pred CcEEEECc-cHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 14 PNVCIVGS-GPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 14 ~~vvIIGa-G~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
++|+|+|| |..|..++..|.+ .|.+|++++|.+
T Consensus 4 ~~ilVtGatG~iG~~l~~~l~~--~g~~V~~~~r~~ 37 (206)
T 1hdo_A 4 KKIAIFGATGQTGLTTLAQAVQ--AGYEVTVLVRDS 37 (206)
T ss_dssp CEEEEESTTSHHHHHHHHHHHH--TTCEEEEEESCG
T ss_pred CEEEEEcCCcHHHHHHHHHHHH--CCCeEEEEEeCh
Confidence 68999998 9999999999999 899999999873
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=86.79 E-value=0.81 Score=42.03 Aligned_cols=34 Identities=18% Similarity=0.275 Sum_probs=29.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC--cEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQS--TVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~--~v~lie~~ 47 (388)
...+|+|||+|..|.++|..+.. .+. +++++|..
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~--~g~~~ev~L~Di~ 55 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLM--KDLADEVALVDVM 55 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHH--HCCCSEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CCCCCeEEEEECC
Confidence 45799999999999999999998 565 89999965
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=86.73 E-value=0.71 Score=42.15 Aligned_cols=34 Identities=18% Similarity=0.254 Sum_probs=30.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~ 47 (388)
..++++|+|+|-+|.++|..|.+ .|. +|++++|.
T Consensus 153 ~gk~~lVlGaGG~g~aia~~L~~--~Ga~~V~i~nR~ 187 (315)
T 3tnl_A 153 IGKKMTICGAGGAATAICIQAAL--DGVKEISIFNRK 187 (315)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHH--TTCSEEEEEECS
T ss_pred cCCEEEEECCChHHHHHHHHHHH--CCCCEEEEEECC
Confidence 46899999999999999999999 898 89999986
|
| >3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ... | Back alignment and structure |
|---|
Probab=86.70 E-value=0.52 Score=47.48 Aligned_cols=40 Identities=33% Similarity=0.502 Sum_probs=36.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
.+||+|||||++|+++|..|++ .|++|+|+|+.+..+|.+
T Consensus 46 ~~dvvIIG~G~aGl~aA~~l~~--~G~~V~liE~~~~~gg~~ 85 (623)
T 3pl8_A 46 KYDVVIVGSGPIGCTYARELVG--AGYKVAMFDIGEIDSGLK 85 (623)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCCCSSSS
T ss_pred cCCEEEECCcHHHHHHHHHHHh--CCCcEEEEeccCCCCCcc
Confidence 4799999999999999999999 899999999998877643
|
| >1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A* | Back alignment and structure |
|---|
Probab=86.70 E-value=0.46 Score=46.51 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=19.0
Q ss_pred CCeEEEEcCChHHHHHHHHhc
Q psy4525 152 CEEATILGQGNVAMDVARILL 172 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~ 172 (388)
..+|+|||+|.+|+-+|..|.
T Consensus 8 ~~~VvIIGaG~aGL~AA~~L~ 28 (516)
T 1rsg_A 8 KKKVIIIGAGIAGLKAASTLH 28 (516)
T ss_dssp EEEEEEECCBHHHHHHHHHHH
T ss_pred CCcEEEECCCHHHHHHHHHHH
Confidence 358999999999999999886
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=86.66 E-value=0.64 Score=42.67 Aligned_cols=34 Identities=21% Similarity=0.291 Sum_probs=29.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC--cEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQS--TVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~--~v~lie~~ 47 (388)
...+|+|||+|..|.++|..|.. .+. +++++|..
T Consensus 8 ~~~kV~ViGaG~vG~~~a~~l~~--~~~~~el~l~D~~ 43 (326)
T 3vku_A 8 DHQKVILVGDGAVGSSYAYAMVL--QGIAQEIGIVDIF 43 (326)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--HTCCSEEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--CCCCCeEEEEeCC
Confidence 45799999999999999999998 555 89999964
|
| >3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A* | Back alignment and structure |
|---|
Probab=86.65 E-value=0.5 Score=44.67 Aligned_cols=33 Identities=27% Similarity=0.388 Sum_probs=27.4
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecC
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRG 206 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~ 206 (388)
++|+|||||..|++.|..++ +.|. +|+++.+++
T Consensus 2 ~dViVIGgG~AG~~AA~~la--------------------~~G~-~V~liE~~~ 34 (443)
T 3g5s_A 2 ERVNVVGAGLAGSEAAWTLL--------------------RLGV-PVRLFEMRP 34 (443)
T ss_dssp CCEEEECCSHHHHHHHHHHH--------------------HTTC-CEEEECCTT
T ss_pred CCEEEECchHHHHHHHHHHH--------------------HCCC-cEEEEeccC
Confidence 46999999999999999886 3454 699999775
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=86.64 E-value=0.71 Score=44.93 Aligned_cols=35 Identities=26% Similarity=0.246 Sum_probs=31.9
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
...++|+|||.|..|..+|..++. .|.+|+++|+.
T Consensus 272 l~GktV~IiG~G~IG~~~A~~lka--~Ga~Viv~d~~ 306 (494)
T 3ce6_A 272 IGGKKVLICGYGDVGKGCAEAMKG--QGARVSVTEID 306 (494)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred CCcCEEEEEccCHHHHHHHHHHHH--CCCEEEEEeCC
Confidence 457899999999999999999999 89999999975
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=86.63 E-value=0.31 Score=42.25 Aligned_cols=33 Identities=15% Similarity=0.218 Sum_probs=28.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
...+++|+|+|..|...|..|.+ .|. |+++|++
T Consensus 8 ~~~~viI~G~G~~G~~la~~L~~--~g~-v~vid~~ 40 (234)
T 2aef_A 8 KSRHVVICGWSESTLECLRELRG--SEV-FVLAEDE 40 (234)
T ss_dssp --CEEEEESCCHHHHHHHHHSTT--SEE-EEEESCG
T ss_pred CCCEEEEECCChHHHHHHHHHHh--CCe-EEEEECC
Confidence 35689999999999999999998 788 9999976
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=86.63 E-value=0.7 Score=39.15 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=28.7
Q ss_pred cEEEEC-ccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 15 NVCIVG-SGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 15 ~vvIIG-aG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
+|+||| +|..|...|..|.+ .|.+|++++++
T Consensus 2 ~i~iiGa~G~~G~~ia~~l~~--~g~~V~~~~r~ 33 (212)
T 1jay_A 2 RVALLGGTGNLGKGLALRLAT--LGHEIVVGSRR 33 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHT--TTCEEEEEESS
T ss_pred eEEEEcCCCHHHHHHHHHHHH--CCCEEEEEeCC
Confidence 689999 99999999999998 89999999976
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=86.62 E-value=0.65 Score=39.60 Aligned_cols=34 Identities=18% Similarity=0.262 Sum_probs=30.7
Q ss_pred CCcEEEECc-cHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 13 KPNVCIVGS-GPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 13 ~~~vvIIGa-G~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
+++|+|.|| |..|..++..|.+ .|.+|++++|.+
T Consensus 4 m~~ilItGatG~iG~~l~~~L~~--~g~~V~~~~r~~ 38 (227)
T 3dhn_A 4 VKKIVLIGASGFVGSALLNEALN--RGFEVTAVVRHP 38 (227)
T ss_dssp CCEEEEETCCHHHHHHHHHHHHT--TTCEEEEECSCG
T ss_pred CCEEEEEcCCchHHHHHHHHHHH--CCCEEEEEEcCc
Confidence 368999996 9999999999999 899999999874
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=86.58 E-value=0.91 Score=41.97 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=28.9
Q ss_pred CCCcEEEECc-cHHHHHHHHHHHhhCCC--CcEEEEcCC
Q psy4525 12 LKPNVCIVGS-GPAGFYCAQQILKLLPQ--STVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGa-G~aGl~aA~~l~~~~~g--~~v~lie~~ 47 (388)
..++|+|||+ |..|.++|..+.. .| .+++++|..
T Consensus 7 ~~~KV~ViGaaG~VG~~~a~~l~~--~g~~~evvLiDi~ 43 (343)
T 3fi9_A 7 TEEKLTIVGAAGMIGSNMAQTAAM--MRLTPNLCLYDPF 43 (343)
T ss_dssp CSSEEEEETTTSHHHHHHHHHHHH--TTCCSCEEEECSC
T ss_pred CCCEEEEECCCChHHHHHHHHHHh--cCCCCEEEEEeCC
Confidence 3468999998 9999999999988 56 489999964
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=86.57 E-value=0.57 Score=42.20 Aligned_cols=33 Identities=24% Similarity=0.335 Sum_probs=29.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
+.+|.|||+|..|...|..|.+ .|++|+++++.
T Consensus 4 ~~~i~iiG~G~~G~~~a~~l~~--~g~~V~~~~~~ 36 (301)
T 3cky_A 4 SIKIGFIGLGAMGKPMAINLLK--EGVTVYAFDLM 36 (301)
T ss_dssp CCEEEEECCCTTHHHHHHHHHH--TTCEEEEECSS
T ss_pred CCEEEEECccHHHHHHHHHHHH--CCCeEEEEeCC
Confidence 3589999999999999999998 79999999875
|
| >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* | Back alignment and structure |
|---|
Probab=86.46 E-value=0.64 Score=44.03 Aligned_cols=36 Identities=14% Similarity=0.175 Sum_probs=31.4
Q ss_pred ccCCCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEc
Q psy4525 8 TISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYE 45 (388)
Q Consensus 8 ~~~~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie 45 (388)
.++++.++|.|+|+|..|...+..+++ .|++++++|
T Consensus 19 ~~mm~~~~I~ilGgG~lg~~l~~aa~~--lG~~v~~~d 54 (403)
T 3k5i_A 19 GHMWNSRKVGVLGGGQLGRMLVESANR--LNIQVNVLD 54 (403)
T ss_dssp --CCSCCEEEEECCSHHHHHHHHHHHH--HTCEEEEEE
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEE
Confidence 344567899999999999999999999 899999999
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=86.41 E-value=0.81 Score=41.65 Aligned_cols=32 Identities=16% Similarity=0.304 Sum_probs=28.5
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKL 47 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~ 47 (388)
.+|+|||+|..|...|..+.. .+. +++++|..
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~--~g~~~v~L~Di~ 35 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAA--KELGDIVLLDIV 35 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCSEEEEECSS
T ss_pred CEEEEECCCHHHHHHHHHHHH--CCCCeEEEEeCC
Confidence 589999999999999999998 675 89999975
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=86.41 E-value=0.55 Score=45.69 Aligned_cols=36 Identities=25% Similarity=0.249 Sum_probs=30.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
..+|.|||+|..|+..|..|.+...|++|+++|+++
T Consensus 9 ~mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~ 44 (481)
T 2o3j_A 9 VSKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNT 44 (481)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCH
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 468999999999999999999932278999999764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 388 | ||||
| d1cjca1 | 225 | c.3.1.1 (A:107-331) Adrenodoxin reductase of mitoc | 3e-47 | |
| d1lqta1 | 216 | c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA | 3e-45 | |
| d1cjca2 | 230 | c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase | 8e-26 | |
| d1cjca2 | 230 | c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase | 3e-15 | |
| d1lqta2 | 239 | c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct | 3e-25 | |
| d1lqta2 | 239 | c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reduct | 9e-14 | |
| d1ps9a3 | 179 | c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA redu | 4e-10 | |
| d1gtea4 | 196 | c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine de | 1e-08 | |
| d2gjca1 | 311 | c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Th | 1e-05 | |
| d1rp0a1 | 278 | c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi | 3e-05 | |
| d2gv8a1 | 335 | c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monox | 4e-05 | |
| d1b5qa1 | 347 | c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Mai | 7e-05 | |
| d1nhpa1 | 198 | c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enter | 0.001 | |
| d1djqa3 | 233 | c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehyd | 0.001 | |
| d2voua1 | 265 | c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydr | 0.003 | |
| d1seza1 | 373 | c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox | 0.004 | |
| d2ivda1 | 347 | c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox | 0.004 | |
| d3c96a1 | 288 | c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Ps | 0.004 |
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Score = 158 bits (400), Expect = 3e-47
Identities = 100/224 (44%), Positives = 134/224 (59%), Gaps = 16/224 (7%)
Query: 115 KKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSP 174
+ L+IPGE+ + SAR+FVGWYNGLPE+ L L C+ A ILGQGNVA+DVARILL+P
Sbjct: 2 QALDIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTP 61
Query: 175 VDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQ 234
D L+ TDITE +L L SR+K+V +VGRRG LQVAFTIKE REM +LP + +
Sbjct: 62 PDHLEKTDITEAALGALRQSRVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPAD 121
Query: 235 LCGVHEASATLARPRKRLTELILKTS------NPDESKSNCSKYFRPIFLRSPTEFKLND 288
G+ + ARPRKRL EL+L+T+ +++ S+ + F RSP + +
Sbjct: 122 FLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRASASRAWGLRFFRSPQQVLPSP 181
Query: 289 NG-AITGINF---------ANQQALVTEDTELIPSGIAFRSIGY 322
+G GI +A+ T D E +P G+ SIGY
Sbjct: 182 DGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGY 225
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 216 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 153 bits (387), Expect = 3e-45
Identities = 74/220 (33%), Positives = 109/220 (49%), Gaps = 15/220 (6%)
Query: 114 DKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLS 173
D+ LNIPGED I+A FVGWYN P + L A ++G GNVA+DVARILL+
Sbjct: 1 DRMLNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLT 60
Query: 174 PVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNE 233
D L TDI +H+LE L I+ V +VGRRG LQ AFT E RE+ L V V
Sbjct: 61 DPDVLARTDIADHALESLRPRGIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPA 120
Query: 234 QLCGVH-EASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAI 292
+L G+ E +A + + K+ +++ ++ + + R +F + ++ +
Sbjct: 121 ELDGITDEDAAAVGKVCKQNIKVLRGYADREPRPGHR----RMVFRFLTSPIEIKGKRKV 176
Query: 293 TGINFA----------NQQALVTEDTELIPSGIAFRSIGY 322
I A T + E +P+ + RS+GY
Sbjct: 177 ERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGY 216
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Score = 101 bits (253), Expect = 8e-26
Identities = 71/177 (40%), Positives = 96/177 (54%), Gaps = 1/177 (0%)
Query: 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFT 73
P +C+VGSGPAGFY AQ +LK ++ VDIYEK VPFGLVR+GVAPDHPEVKNVINTFT
Sbjct: 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFT 61
Query: 74 KTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSF 133
+T + R FYGN+ +G+D+++ +L +AYHAVVL+YGA++ + P +
Sbjct: 62 QTARSDRCAFYGNVEVGRDVTVQELQDAYHAVVLSYGAEDKSRPIDPSVPFDPKLGVVPN 121
Query: 134 -VGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLE 189
G +P I + +ILL +
Sbjct: 122 MEGRVVDVPGLYCSGWVKRGPTGVITTTMTDSFLTGQILLQDLKAGHLPSGPRPGSA 178
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Score = 72.3 bits (176), Expect = 3e-15
Identities = 18/45 (40%), Positives = 29/45 (64%)
Query: 343 KEGVPVVTWEGWKAIDKEETERGKLKGKPREKIISIEEMISVSGN 387
GV V++ W+ +D EE RG+ GKPREK++ +EM+ + G+
Sbjct: 186 SRGVWPVSFSDWEKLDAEEVSRGQASGKPREKLLDPQEMLRLLGH 230
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 100 bits (250), Expect = 3e-25
Identities = 63/247 (25%), Positives = 100/247 (40%), Gaps = 25/247 (10%)
Query: 13 KP-NVCIVGSGPAGFYCAQQILKLLPQST-----VDIYEKLPVPFGLVRYGVAPDHPEVK 66
+P + IVGSGP+ F+ A +LK + VD+ E LP P+GLVR GVAPDHP++K
Sbjct: 1 RPYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIK 60
Query: 67 NVINTFTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKN 126
++ F KT ++PR F+GN+ +G+ + G+L+ Y AV+ GA +
Sbjct: 61 SISKQFEKTAEDPRFRFFGNVVVGEHVQPGELSERYDAVIYAVGAQSRGVPTPGLPFDDQ 120
Query: 127 IISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEH 186
+ + G NG P + + I A D L + L +
Sbjct: 121 SGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQDTVDTL---IKNLGNAKEGAE 177
Query: 187 SLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLA 246
+ + + R ++ H Q + E+ A
Sbjct: 178 CKSFPEDHADQVADWLAARQ-----------PKLVTSAHWQVIDAFER-----AAGEPHG 221
Query: 247 RPRKRLT 253
RPR +L
Sbjct: 222 RPRVKLA 228
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 68.2 bits (165), Expect = 9e-14
Identities = 14/62 (22%), Positives = 27/62 (43%)
Query: 324 SRCVDSDIPFNEKSCTVIPKEGVPVVTWEGWKAIDKEETERGKLKGKPREKIISIEEMIS 383
+ C ++ + +VT W+ ID E G+ G+PR K+ S+ E++
Sbjct: 176 AECKSFPEDHADQVADWLAARQPKLVTSAHWQVIDAFERAAGEPHGRPRVKLASLAELLR 235
Query: 384 VS 385
+
Sbjct: 236 IG 237
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} Length = 179 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Score = 56.3 bits (135), Expect = 4e-10
Identities = 28/157 (17%), Positives = 52/157 (33%), Gaps = 22/157 (14%)
Query: 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYG-VAPDHPEVKNVINT 71
K N+ +VG+GPAG A V +++ G P E +
Sbjct: 43 KKNLAVVGAGPAGLAFAINAAA--RGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRY 100
Query: 72 FTKTGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISAR 131
+ + + V N + D A+ +L G N + GK
Sbjct: 101 YRRMIEVTGVTLKLNHTVTADQ-----LQAFDETILASGIPNRALAQPLIDSGKT----- 150
Query: 132 SFVGWYNGLPEDASLDLSLDCEEATILGQG-NVAMDV 167
V G D++++ + + QG +A+++
Sbjct: 151 --VHLIGG------CDVAMELDARRAIAQGTRLALEI 179
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} Length = 196 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Score = 52.4 bits (124), Expect = 1e-08
Identities = 26/155 (16%), Positives = 45/155 (29%), Gaps = 4/155 (2%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKT 75
+ ++G+GPA CA L L S + I+EK GL + V
Sbjct: 7 IALLGAGPASISCASF-LARLGYSDITIFEKQEYVGGLSTSEIPQFRLPYDVVNFEIELM 65
Query: 76 GD-NPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFV 134
D ++ ++ + Y A + G + E I R +
Sbjct: 66 KDLGVKIICGKSLSENEITLNTLKEEGYKAAFIGIGLPEVLRDPKVKEALSPIKFNRWDL 125
Query: 135 GWYNGLPEDASLDLSLDCEEATILGQGNVAMDVAR 169
+ S I+G N ++
Sbjct: 126 PEVDPETMQTSEPWVFAG--GDIVGMANTTVESVN 158
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.5 bits (104), Expect = 1e-05
Identities = 24/120 (20%), Positives = 31/120 (25%), Gaps = 14/120 (11%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYG-VAPDHPEVKNVINTFTK 74
V IVG+G +G A I K P V I E P G G ++ + F +
Sbjct: 53 VIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFSAMVMRKPAHLFLQ 112
Query: 75 TGDNPRVNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFV 134
L L K L +P N V
Sbjct: 113 -------------ELEIPYEDEGDYVVVKHAALFISTVLSKVLQLPNVKLFNATCVEDLV 159
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} Length = 278 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Score = 43.3 bits (101), Expect = 3e-05
Identities = 25/168 (14%), Positives = 49/168 (29%), Gaps = 7/168 (4%)
Query: 7 STISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYG--VAPDHPE 64
I+ + +V +VG+G AG A + + P V I E+ P G G +
Sbjct: 27 DMITYAETDVVVVGAGSAGLSAAYE-ISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIV 85
Query: 65 VKNVINTFTKTGDNPRV--NFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGE 122
K + G + S V + A + L + G
Sbjct: 86 RKPAHLFLDEIGVAYDEQDTYVVVKHAALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGN 145
Query: 123 DGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARI 170
+++ + V + ++ + + G+ A
Sbjct: 146 RVGGVVTNWALVAQNHHTQSCMD-PNVMEAKI-VVSSCGHDGPFGATG 191
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Score = 42.7 bits (99), Expect = 4e-05
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 4/76 (5%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY----GVAPDHPEVKNVINT 71
+ I+G+GP+G A+ +L V ++E+ P G+ Y P ++ T
Sbjct: 7 IAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTT 66
Query: 72 FTKTGDNPRVNFYGNI 87
G + +
Sbjct: 67 EPIVGPAALPVYPSPL 82
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Score = 41.9 bits (96), Expect = 7e-05
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55
P V +VG+G +G A++ L + + I E G +
Sbjct: 1 PRVIVVGAGMSGISAAKR-LSEAGITDLLILEATDHIGGRMH 41
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Score = 37.9 bits (86), Expect = 0.001
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50
V ++GS G+ +++L L P + + YEK
Sbjct: 3 VIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFI 37
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} Length = 233 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Score = 37.5 bits (85), Expect = 0.001
Identities = 23/163 (14%), Positives = 48/163 (29%), Gaps = 16/163 (9%)
Query: 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTF 72
K +V IVG+GP+G A+ +++ + + G + A + +
Sbjct: 49 KDSVLIVGAGPSGSEAARVLMESGYTVH--LTDTAEKIGGHLNQVAALPGLGEWSYHRDY 106
Query: 73 TKTGDNPR----VNFYGNICLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNII 128
+T + + L V++ GA ++ L + ++
Sbjct: 107 RETQITKLLKKNKESQLALGQKPMTADDVLQYGADKVIIATGA-SECTLWNELKARESEW 165
Query: 129 SARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARIL 171
+ G Y + I VAR +
Sbjct: 166 AENDIKGIYL---------IGDAEAPRLIADATFTGHRVAREI 199
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} Length = 265 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Score = 37.0 bits (84), Expect = 0.003
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 6/52 (11%)
Query: 10 SQLKPNVCIVGSGPAGFYCAQQILKLLPQS--TVDIYEKLPVPFGLVRYGVA 59
S + +VG +G A +L + VD+YE+ P P G+
Sbjct: 1 SPTTDRIAVVGGSISGLTAAL----MLRDAGVDVDVYERSPQPLSGFGTGIV 48
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Score = 36.7 bits (83), Expect = 0.004
Identities = 9/40 (22%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 16 VCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55
V ++G+G +G A ++ V ++E G +R
Sbjct: 4 VAVIGAGVSGLAAAYKLKIHGLN--VTVFEAEGKAGGKLR 41
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Score = 36.7 bits (83), Expect = 0.004
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 2/49 (4%)
Query: 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHP 63
NV +VG G +G A + + E G V +
Sbjct: 2 NVAVVGGGISGLAVAHHLRSRGTD--AVLLESSARLGGAVGTHALAGYL 48
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} Length = 288 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Score = 36.2 bits (82), Expect = 0.004
Identities = 9/36 (25%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50
++ I G+G G CA L V + E
Sbjct: 3 DILIAGAGIGGLSCALA-LHQAGIGKVTLLESSSEI 37
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 388 | |||
| d1cjca1 | 225 | Adrenodoxin reductase of mitochondrial p450 system | 99.95 | |
| d1lqta1 | 216 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 99.94 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 99.89 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 99.89 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 99.78 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 99.72 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 99.52 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.5 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 99.49 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.48 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 99.47 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.46 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 99.45 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.44 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 99.43 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 99.42 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 99.42 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 99.41 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 99.38 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 99.38 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 99.37 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 99.37 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 99.36 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.36 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.35 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 99.34 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 99.34 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 99.33 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 99.3 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 99.28 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.27 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 99.24 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 99.24 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 99.18 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 99.17 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 99.14 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 99.12 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 99.11 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 99.05 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 99.02 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 99.02 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 99.0 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 98.98 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 98.96 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 98.96 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.95 | |
| d1feca2 | 117 | Trypanothione reductase {Crithidia fasciculata [Ta | 98.94 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.93 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 98.91 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 98.91 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 98.91 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 98.9 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 98.9 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.89 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 98.89 | |
| d1xhca1 | 167 | NADH oxidase /nitrite reductase {Pyrococcus furios | 98.88 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.84 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 98.84 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 98.83 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.83 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.82 | |
| d1m6ia2 | 137 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 98.82 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.81 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 98.8 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 98.8 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 98.79 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 98.76 | |
| d1aoga2 | 117 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 98.71 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 98.68 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 98.68 | |
| d1nhpa1 | 198 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 98.68 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 98.68 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 98.67 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 98.65 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 98.64 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 98.63 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 98.62 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 98.62 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 98.61 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 98.6 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 98.6 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 98.59 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 98.59 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 98.58 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 98.58 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 98.57 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 98.55 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 98.55 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 98.54 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 98.53 | |
| d1m6ia1 | 213 | Apoptosis-inducing factor (AIF) {Human (Homo sapie | 98.53 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 98.52 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 98.49 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 98.49 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 98.44 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 98.44 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 98.42 | |
| d1d7ya1 | 183 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 98.42 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 98.39 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 98.38 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 98.33 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 98.26 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 98.25 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 98.23 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 98.1 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 98.09 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 98.05 | |
| d1djqa2 | 156 | Trimethylamine dehydrogenase, C-terminal domain {M | 98.02 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 97.99 | |
| d2gv8a1 | 335 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 97.97 | |
| d1q1ra1 | 185 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 97.96 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 97.95 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 97.88 | |
| d1mo9a1 | 261 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 97.87 | |
| d2i0za1 | 251 | Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] | 97.86 | |
| d2gqfa1 | 253 | Hypothetical protein HI0933 {Haemophilus influenza | 97.86 | |
| d1xdia1 | 233 | Dihydrolipoamide dehydrogenase {Mycobacterium tube | 97.84 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 97.84 | |
| d1chua2 | 305 | L-aspartate oxidase {Escherichia coli [TaxId: 562] | 97.78 | |
| d1dxla1 | 221 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 97.72 | |
| d1neka2 | 330 | Succinate dehydogenase {Escherichia coli [TaxId: 5 | 97.71 | |
| d1vdca1 | 192 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 97.7 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 97.7 | |
| d1ps9a2 | 162 | 2,4-dienoyl-CoA reductase, C-terminal domain {Esch | 97.62 | |
| d1jnra2 | 356 | Adenylylsulfate reductase A subunit {Archaeon Arch | 97.59 | |
| d1y0pa2 | 308 | Flavocytochrome c3 (respiratory fumarate reductase | 97.58 | |
| d1ebda1 | 223 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 97.56 | |
| d1trba1 | 190 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 97.55 | |
| d1d4ca2 | 322 | Flavocytochrome c3 (respiratory fumarate reductase | 97.55 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 97.5 | |
| d2cula1 | 230 | GidA-related protein TTHA1897 {Thermus thermophilu | 97.46 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 97.37 | |
| d1fl2a1 | 184 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 97.33 | |
| d1gtea3 | 153 | Dihydropyrimidine dehydrogenase, domain 3 {Pig (Su | 97.32 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 97.3 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 97.26 | |
| d1trba2 | 126 | Thioredoxin reductase {Escherichia coli [TaxId: 56 | 97.23 | |
| d1kdga1 | 360 | Flavoprotein domain of flavocytochrome cellobiose | 97.21 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 97.2 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 97.15 | |
| d1gesa1 | 217 | Glutathione reductase {Escherichia coli [TaxId: 56 | 97.15 | |
| d1qo8a2 | 317 | Flavocytochrome c3 (respiratory fumarate reductase | 97.13 | |
| d1lvla1 | 220 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 97.11 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.04 | |
| d1v59a1 | 233 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 96.91 | |
| d1fl2a2 | 126 | Alkyl hydroperoxide reductase subunit F (AhpF), C- | 96.91 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 96.9 | |
| d1feca1 | 240 | Trypanothione reductase {Crithidia fasciculata [Ta | 96.88 | |
| d1gpea1 | 391 | Glucose oxidase {Penicillium amagasakiense [TaxId: | 96.84 | |
| d1cf3a1 | 385 | Glucose oxidase {Aspergillus niger [TaxId: 5061]} | 96.81 | |
| d3grsa1 | 221 | Glutathione reductase {Human (Homo sapiens) [TaxId | 96.76 | |
| d1onfa1 | 259 | Glutathione reductase {Plasmodium falciparum [TaxI | 96.73 | |
| d1h6va1 | 235 | Mammalian thioredoxin reductase {Rat (Rattus norve | 96.72 | |
| d1ryia1 | 276 | Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | 96.7 | |
| d1ju2a1 | 351 | Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxI | 96.69 | |
| d3lada1 | 229 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 96.68 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 96.64 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 96.63 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 96.57 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 96.42 | |
| d1k0ia1 | 292 | p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a | 96.4 | |
| d1lqta2 | 239 | Ferredoxin:NADP reductase FprA {Mycobacterium tube | 96.39 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 96.38 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 96.03 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 95.98 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 95.96 | |
| d1rp0a1 | 278 | Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara | 95.95 | |
| d2bs2a2 | 336 | Fumarate reductase {Wolinella succinogenes [TaxId: | 95.83 | |
| d1vdca2 | 130 | Thioredoxin reductase {Mouse-ear cress (Arabidopsi | 95.76 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 95.74 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 95.73 | |
| d1ojta1 | 229 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 95.72 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 95.69 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 95.62 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 95.6 | |
| d1kf6a2 | 311 | Fumarate reductase {Escherichia coli [TaxId: 562]} | 95.59 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 95.55 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 95.19 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 95.17 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 95.06 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 94.85 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 94.79 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 94.6 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 94.52 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 94.49 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 94.45 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 94.42 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 94.26 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 94.09 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 94.0 | |
| d2gv8a2 | 107 | Flavin-dependent monoxygenase SPBP16F5.08c {Schizo | 93.9 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 93.89 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 93.66 | |
| d1i8ta1 | 298 | UDP-galactopyranose mutase, N-terminal domain {Esc | 93.65 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 93.6 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 93.42 | |
| d1a9xa3 | 127 | Carbamoyl phosphate synthetase (CPS), large subuni | 93.36 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 93.26 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 93.26 | |
| d1vg0a1 | 491 | Rab escort protein 1 {Rat (Rattus norvegicus) [Tax | 93.09 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 92.99 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 92.97 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 92.94 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 92.91 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 92.84 | |
| d1a9xa4 | 121 | Carbamoyl phosphate synthetase (CPS), large subuni | 92.8 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 92.63 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 92.48 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 92.46 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 92.4 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 92.39 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 92.23 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 92.22 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 92.13 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 91.91 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 91.89 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 91.68 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 91.65 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 91.63 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 91.49 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 91.41 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 91.34 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 91.3 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 91.28 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 91.22 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 91.14 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 91.14 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 91.01 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 90.95 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 90.68 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 90.42 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 90.16 | |
| d2gf3a1 | 281 | Sarcosine oxidase {Bacillus sp., strain b0618 [Tax | 90.06 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 90.04 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 89.94 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 89.9 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 89.82 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 89.79 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 89.76 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 89.41 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 89.4 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 89.1 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 89.0 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 88.97 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 88.86 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 88.76 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 88.73 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 88.68 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 88.13 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 87.75 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 87.48 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 87.41 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 86.96 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 86.83 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 86.21 | |
| d1pn0a1 | 360 | Phenol hydroxylase {Soil-living yeast (Trichosporo | 86.19 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 86.05 | |
| d2gmha1 | 380 | Electron transfer flavoprotein-ubiquinone oxidored | 86.01 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 85.84 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 85.64 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 85.62 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 85.56 | |
| d2gjca1 | 311 | Thiazole biosynthetic enzyme Thi4 {Baker's yeast ( | 85.43 | |
| d3coxa1 | 370 | Cholesterol oxidase of GMC family {Brevibacterium | 85.32 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 85.31 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 85.13 | |
| d1w4xa2 | 235 | Phenylacetone monooxygenase {Thermobifida fusca [T | 84.96 | |
| d1n4wa1 | 367 | Cholesterol oxidase of GMC family {Streptomyces sp | 84.9 | |
| d1aoga1 | 238 | Trypanothione reductase {Trypanosoma cruzi [TaxId: | 84.16 | |
| d2f5va1 | 379 | Pyranose 2-oxidase {White-rot fungus (Peniophora s | 83.89 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 83.78 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 83.76 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 83.17 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 83.15 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 83.11 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 82.93 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 82.92 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 82.57 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 82.22 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 81.75 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 81.73 | |
| d1kifa1 | 246 | D-aminoacid oxidase, N-terminal domain {Pig (Sus s | 81.41 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 81.19 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 80.84 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 80.79 | |
| d2b69a1 | 312 | UDP-glucuronate decarboxylase 1 {Human (Homo sapie | 80.68 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 80.61 | |
| d2c5aa1 | 363 | GDP-mannose-3', 5'-epimerase {Thale cress (Arabido | 80.46 |
| >d1cjca1 c.3.1.1 (A:107-331) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=2e-27 Score=209.50 Aligned_cols=208 Identities=49% Similarity=0.809 Sum_probs=178.2
Q ss_pred CCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcC
Q psy4525 115 KKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTS 194 (388)
Q Consensus 115 ~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
|.++|||.+++||+.+.+|+.||+++++.........+++|+|||+|++|+|+|+.+.++.++|.+|||+.+.++.+...
T Consensus 2 R~L~IPGedl~gV~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNVAlD~aR~l~r~~~~l~~tdi~~~~l~~l~~~ 81 (225)
T d1cjca1 2 QALDIPGEELPGVFSARAFVGWYNGLPENRELAPDLSCDTAVILGQGNVALDVARILLTPPDHLEKTDITEAALGALRQS 81 (225)
T ss_dssp CCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCTTSSEEEEESCSHHHHHHHHHHHSCGGGGTTSCCCHHHHHHHHTC
T ss_pred CCCCCCCCCCCCcEeHHHHHHHHhCCccccccCccccCceEEEECCchhHHHHHHHHhcCHHhhcCCCCcHHHHHHHhcc
Confidence 57899999999999999999999999888766666779999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCC------CCC
Q psy4525 195 RIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDES------KSN 268 (388)
Q Consensus 195 ~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~~ 268 (388)
++++|++++|+++.+++|+++|++++.+++.+...+++.++.........+.+..++....+.+....... ...
T Consensus 82 g~~~V~iv~RRg~~~~~ft~~Elre~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (225)
T d1cjca1 82 RVKTVWIVGRRGPLQVAFTIKELREMIQLPGTRPMLDPADFLGLQDRIKEAARPRKRLMELLLRTATEKPGVEEAARRAS 161 (225)
T ss_dssp CCCEEEEECSSCGGGCCCCHHHHHHHHTCTTEEEECCGGGGTTHHHHTTTSCHHHHHHHHHHHHHHHSCCCHHHHHHHHT
T ss_pred CCCeEEEEEEcChHhCCCCchhhhcccccCCCcceechhhhccchhhhhhhhhHHHHHHHHHHHHHHhcccccccccccc
Confidence 99999999999999999999999999999999999998888776666666777777777766555433221 124
Q ss_pred CceeEEEEecCcceeeeeCCCC-ceeEEEEcc---------CccccCCceeEEecceEEEcccc
Q psy4525 269 CSKYFRPIFLRSPTEFKLNDNG-AITGINFAN---------QQALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 269 ~~~gv~~~~~~~~~~i~~~~~~-~v~~v~~~~---------~~~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
..+++.++|...++++.+++++ ++.++++.. +..+.+++..+++||+||.|+||
T Consensus 162 ~~~~i~~~f~~~p~~i~~~~~g~~v~~v~~~~~~~~~~~~~~~~~~tg~~~~ipadlVi~AiGf 225 (225)
T d1cjca1 162 ASRAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPCGLVLSSIGY 225 (225)
T ss_dssp CSEEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEECSEEEECCCE
T ss_pred cccceEEEeecccccccccCCCCeEEEEEEEEeEECCCCCCCcccCCCcEEEEECCEEEECCCC
Confidence 4689999999999999987654 788887762 22345677788999999999997
|
| >d1lqta1 c.3.1.1 (A:109-324) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.94 E-value=4.7e-26 Score=199.45 Aligned_cols=204 Identities=37% Similarity=0.579 Sum_probs=169.0
Q ss_pred CCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcC
Q psy4525 115 KKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTS 194 (388)
Q Consensus 115 ~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
|.++|||.+++||+++.+|+.|||+++++........+++|+|||+|++|+|+|+.|+++.++|.+||++.+.++.+.+.
T Consensus 2 R~L~IPGedl~gV~~A~dfl~~~N~~p~~~~~~~~~~gk~VvVIGgGNvAlD~AR~ll~~~~~l~~tdi~~~~l~~l~r~ 81 (216)
T d1lqta1 2 RMLNIPGEDLPGSIAAVDFVGWYNAHPHFEQVSPDLSGARAVVIGNGNVALDVARILLTDPDVLARTDIADHALESLRPR 81 (216)
T ss_dssp CCCCCTTTTSTTEEEHHHHHHHHTTCGGGTTCCCCCCSSEEEEECCSHHHHHHHHHHHSCHHHHTTSCCCHHHHHHHTTC
T ss_pred CCCCCCCCCCCCcEeHHHHHHHHhCCccccccCccccCceEEEECCCchhHhhhhhhccCHhhhccCCCcHHHHHHHhhc
Confidence 67899999999999999999999999988776666778999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhh-hccccchhhHHHHHHHhhCCCCCCCCCCceeE
Q psy4525 195 RIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEA-SATLARPRKRLTELILKTSNPDESKSNCSKYF 273 (388)
Q Consensus 195 ~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv 273 (388)
++++|++++|+++.+++|+.+|++|+.+++.....+++.++....+. ...+.+..++....+.++..... ....+.+
T Consensus 82 ~~~~V~iv~RRg~~~~~ft~~Elre~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 159 (216)
T d1lqta1 82 GIQEVVIVGRRGPLQAAFTTLELRELADLDGVDVVIDPAELDGITDEDAAAVGKVCKQNIKVLRGYADREP--RPGHRRM 159 (216)
T ss_dssp CCCEEEEECSSCGGGCCCCHHHHHHGGGCTTEEEECCGGGGTTCCHHHHHHHCHHHHHHHHHHHHHHTCC---CTTSEEE
T ss_pred CCceEEEEEECChHhCCCChhhhhhhcccCCCCccCCHHHccchhhhhhhhhccchhHHHHHHHHhhhhcc--ccCccee
Confidence 99999999999999999999999999999999999888776544433 23344555666666666654432 2445778
Q ss_pred EEEecCcceeeeeCCCCceeEEEEcc--------Cc--cccCCceeEEecceEEEcccc
Q psy4525 274 RPIFLRSPTEFKLNDNGAITGINFAN--------QQ--ALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 274 ~~~~~~~~~~i~~~~~~~v~~v~~~~--------~~--~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
.+.+...+..+. +++++.++++.. ++ .+.+++.+.|+||+||.|+||
T Consensus 160 ~~~~~~~~~~~~--~~~~v~~l~~~~~~~~~d~~g~~~~~~~g~~~~i~~dlvi~AIGy 216 (216)
T d1lqta1 160 VFRFLTSPIEIK--GKRKVERIVLGRNELVSDGSGRVAAKDTGEREELPAQLVVRSVGY 216 (216)
T ss_dssp EEECSEEEEEEE--CSSSCCEEEEEEEEEEECSSSSEEEEEEEEEEEEECSEEEECSCE
T ss_pred eeeecccccccc--ccCceeEEEEEEEEEeeCCCCCeeeecCCcEEEEECCEEEECCCC
Confidence 888888888886 457888887752 11 234577788999999999997
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.89 E-value=2e-25 Score=198.23 Aligned_cols=158 Identities=34% Similarity=0.583 Sum_probs=117.7
Q ss_pred CCcEEEECccHHHHHHHHHHHhh-----CCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKL-----LPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNI 87 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~-----~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~ 87 (388)
+++|+|||||||||+||..|.+. ..+++|+|||+.+.+||+|+++++|++...+.+.+....++...++.+++++
T Consensus 2 p~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~~gi~p~~~~~~~~~~~~~~~~~~~g~~~~~~~ 81 (239)
T d1lqta2 2 PYYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVRSGVAPDHPKIKSISKQFEKTAEDPRFRFFGNV 81 (239)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHHHTSCTTCTGGGGGHHHHHHHHTSTTEEEEESC
T ss_pred CcEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeeeeccCcccccchhhhhhhhhhhccCCceEEEEE
Confidence 47999999999999999999983 1336899999999999999999988888888888888888999999999998
Q ss_pred EEEEEeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeeccccccccc-CCCCccccCcCCCCCeEEEEcCChHHHH
Q psy4525 88 CLGQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYN-GLPEDASLDLSLDCEEATILGQGNVAMD 166 (388)
Q Consensus 88 ~v~~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~-~~~~~~~~~~~~~~~~vvVIGgG~sg~e 166 (388)
.++.+...++....||++++|||+.. +.+..+|...+.++....+..... .............+++++|+|+|+.++|
T Consensus 82 ~v~~~~~~~~~~~~~~~v~~atGa~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~vv~g~g~~a~d 160 (239)
T d1lqta2 82 VVGEHVQPGELSERYDAVIYAVGAQS-RGVPTPGLPFDDQSGTIPNVGGRINGSPNEYVVGWIKRGPTGVIGTNKKDAQD 160 (239)
T ss_dssp CBTTTBCHHHHHHHSSEEEECCCCCE-ECCCCTTSCCBTTTTBCCEETTEETTCSSEEECTHHHHCSCSCTTHHHHHHHH
T ss_pred EeccccchhhhhccccceeeecCCCc-cccccccccccccccchhhhhhhhccccccccceeecCCCEEEEeCCCchHHH
Confidence 88766666666668999999999876 355666655444333333322211 1111111122223678899999999999
Q ss_pred HHHHh
Q psy4525 167 VARIL 171 (388)
Q Consensus 167 ~a~~L 171 (388)
++..+
T Consensus 161 ~a~~~ 165 (239)
T d1lqta2 161 TVDTL 165 (239)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98844
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.89 E-value=9.7e-25 Score=193.17 Aligned_cols=114 Identities=57% Similarity=0.989 Sum_probs=96.6
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEEEe
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQDI 93 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~~ 93 (388)
++|+|||||||||+||.+|++...+.+|+|||+.+.+||+++|++.+.+.....+.......+...+++++.++.++.++
T Consensus 2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 81 (230)
T d1cjca2 2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRFGVAPDHPEVKNVINTFTQTARSDRCAFYGNVEVGRDV 81 (230)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHHTSCTTCGGGGGHHHHHHHHHTSTTEEEEBSCCBTTTB
T ss_pred CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehhhccccccccccchhhhhhhhhcCCeeEEeeEEeCccc
Confidence 59999999999999999998855688999999999999999999977777788888888888999999999999887776
Q ss_pred eecccccccCEEEEeeCCCCCCCCCCCCCCCCCe
Q psy4525 94 SLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNI 127 (388)
Q Consensus 94 ~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v 127 (388)
+..+....||+|++|||+.+.+.+..++....++
T Consensus 82 ~~~~l~~~~d~v~~a~Ga~~~~~~~~~~~~~~~~ 115 (230)
T d1cjca2 82 TVQELQDAYHAVVLSYGAEDKSRPIDPSVPFDPK 115 (230)
T ss_dssp CHHHHHHHSSEEEECCCCCEECCCCCTTSCCBTT
T ss_pred cHHHHHhhhceEEEEeeccccccccccccccccc
Confidence 6666666899999999997755666776654443
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=99.78 E-value=1.6e-20 Score=157.95 Aligned_cols=122 Identities=22% Similarity=0.325 Sum_probs=102.2
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeC-CCCCCcchhHHHHHHHHhhcCCCcEEEceEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYG-VAPDHPEVKNVINTFTKTGDNPRVNFYGNICL 89 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g-~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v 89 (388)
..+++|+|||||||||+||..|++ .|++|+|||+.+.+||.++++ ..|.+....++.+++.+++++.++++++++.+
T Consensus 41 ~~~k~V~IIGaGPAGL~AA~~la~--~G~~Vtl~E~~~~~GG~l~~~~~~p~~~~~~~~~~~~~~~~~~~gV~i~l~~~V 118 (179)
T d1ps9a3 41 VQKKNLAVVGAGPAGLAFAINAAA--RGHQVTLFDAHSEIGGQFNIAKQIPGKEEFYETLRYYRRMIEVTGVTLKLNHTV 118 (179)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSSCTTHHHHTTSTTCTTHHHHHHHHHHHHHHHTCEEEESCCC
T ss_pred CCCcEEEEECccHHHHHHHHHHHh--hccceEEEeccCccCceEEEEEeCcccchHHHHHHHHHHhhhcCCeEEEeCCEE
Confidence 567999999999999999999999 899999999999999998753 34788888999999999999999999998876
Q ss_pred EEEeeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHH
Q psy4525 90 GQDISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDV 167 (388)
Q Consensus 90 ~~~~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~ 167 (388)
.. +....||.||+|||+.+ +.+++||.+ .+++++|||+|++++|+
T Consensus 119 t~-----~~~~~~d~vilAtG~~~-~~~~~pg~~---------------------------~g~~v~vigggd~a~~~ 163 (179)
T d1ps9a3 119 TA-----DQLQAFDETILASGIPN-RALAQPLID---------------------------SGKTVHLIGGCDVAMEL 163 (179)
T ss_dssp CS-----SSSCCSSEEEECCCEEC-CTTHHHHHT---------------------------TTCCEEECGGGTCCSSC
T ss_pred cc-----cccccceeEEEeecCCC-cccccchhc---------------------------cCCEEEEECCcHhhhhc
Confidence 32 23458999999999876 455544422 26899999999998886
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.72 E-value=3.3e-20 Score=164.07 Aligned_cols=163 Identities=15% Similarity=0.080 Sum_probs=103.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceee-CCCCCCcchhHHHHHHHHhhc---CCC--cEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY-GVAPDHPEVKNVINTFTKTGD---NPR--VNFY 84 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~-g~~p~~~~~~~~~~~~~~~~~---~~~--i~~~ 84 (388)
...++|+||||||||+++|..|++ .|++|+|||+++.+||.|.+ ...|..........+....+. ..+ ..+.
T Consensus 47 ~~~k~VvIIGaGpAGl~aA~~l~~--~G~~v~l~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (233)
T d1djqa3 47 KNKDSVLIVGAGPSGSEAARVLME--SGYTVHLTDTAEKIGGHLNQVAALPGLGEWSYHRDYRETQITKLLKKNKESQLA 124 (233)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSTTTTHHHHTTSTTCGGGGHHHHHHHHHHHHHHTTCTTCEEE
T ss_pred cCCceEEEEcccHHHHHHHHHHHH--hccceeeEeeccccCCccccccccceeecccccchhHHHHHHHHhhcceeeeee
Confidence 467999999999999999999999 89999999999999999854 333444443333333332222 122 2222
Q ss_pred ceEEEEEEeeecc-cccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChH
Q psy4525 85 GNICLGQDISLGD-LTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNV 163 (388)
Q Consensus 85 ~~~~v~~~~~~~~-~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~s 163 (388)
.+.. .++... .+..||+||+|||+.+ +.+.+++.+....+...... ... .....+++++|+|+|++
T Consensus 125 ~~~~---~~~~~~~~~~~~d~vviAtG~~~-~~~~~~~~~~~~~~~~~~~~-------~~~--~~~~~~~~vvViGgG~~ 191 (233)
T d1djqa3 125 LGQK---PMTADDVLQYGADKVIIATGASE-CTLWNELKARESEWAENDIK-------GIY--LIGDAEAPRLIADATFT 191 (233)
T ss_dssp CSCC---CCCHHHHHTSCCSEEEECCCEEC-CHHHHHHHHTTHHHHHTTCC-------EEE--ECGGGTSCCCHHHHHHH
T ss_pred cccc---cccchhhhhhccceeeeccCCCc-ccccccccccccccchhhhh-------hhh--hccccCCceeEecCchH
Confidence 2111 112222 2348999999999876 34434433322222211111 111 11224689999999999
Q ss_pred HHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCccc
Q psy4525 164 AMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQ 209 (388)
Q Consensus 164 g~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~ 209 (388)
|+|+|..|+ ....+|++++|++.+.
T Consensus 192 g~e~A~~l~---------------------~~g~~Vtli~r~~~~~ 216 (233)
T d1djqa3 192 GHRVAREIE---------------------EANPQIAIPYKRETIA 216 (233)
T ss_dssp HHHHHHTTT---------------------SSCTTSCCCCCCCCCC
T ss_pred HHHHHHHHH---------------------hcCCceEEEEeccccc
Confidence 999999886 2335699999998754
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=99.52 E-value=4.5e-14 Score=110.86 Aligned_cols=121 Identities=13% Similarity=0.178 Sum_probs=88.2
Q ss_pred CCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEE
Q psy4525 121 GEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVN 200 (388)
Q Consensus 121 g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ 200 (388)
|.+.++||+...+..... ..++++++|||||++|+|+|..|+ ....+|+
T Consensus 1 G~~~~gv~~~~~~~~~l~----------~~~~~~vvVvGgG~ig~E~A~~l~---------------------~~g~~vt 49 (121)
T d1mo9a2 1 GVNAKGVFDHATLVEELD----------YEPGSTVVVVGGSKTAVEYGCFFN---------------------ATGRRTV 49 (121)
T ss_dssp TTTSBTEEEHHHHHHHCC----------SCCCSEEEEECCSHHHHHHHHHHH---------------------HTTCEEE
T ss_pred CCCCCCEEeHHHHHHHHh----------hCCCCEEEEECCCHHHHHHHHHHH---------------------hcchhhe
Confidence 567788998877764321 234799999999999999999886 2336899
Q ss_pred EEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCc
Q psy4525 201 LVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRS 280 (388)
Q Consensus 201 ~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~ 280 (388)
++.|++.+...+. ++++ +.+.+.+. ++||++++++.
T Consensus 50 ~i~~~~~~l~~~d-~~~~-------------------------------~~~~~~l~------------~~gI~v~~~~~ 85 (121)
T d1mo9a2 50 MLVRTEPLKLIKD-NETR-------------------------------AYVLDRMK------------EQGMEIISGSN 85 (121)
T ss_dssp EECSSCTTTTCCS-HHHH-------------------------------HHHHHHHH------------HTTCEEESSCE
T ss_pred Eeeccchhhcccc-cchh-------------------------------hhhhhhhh------------ccccEEEcCCE
Confidence 9999987654333 2222 22222322 67999999999
Q ss_pred ceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccc
Q psy4525 281 PTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIG 321 (388)
Q Consensus 281 ~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G 321 (388)
++++..++++.+..+... ..+++++++||.||+|+|
T Consensus 86 v~~i~~~~~~~~~~~~~~-----~~~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 86 VTRIEEDANGRVQAVVAM-----TPNGEMRIETDFVFLGLG 121 (121)
T ss_dssp EEEEEECTTSBEEEEEEE-----ETTEEEEEECSCEEECCC
T ss_pred EEEEEecCCceEEEEEEE-----eCCCCEEEEcCEEEEEEC
Confidence 999998777776665442 256778999999999998
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.50 E-value=3.1e-14 Score=111.56 Aligned_cols=119 Identities=17% Similarity=0.140 Sum_probs=82.6
Q ss_pred CCCCCCCCCCeeecccccccccCCCCcccc-CcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCC
Q psy4525 117 LNIPGEDGKNIISARSFVGWYNGLPEDASL-DLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSR 195 (388)
Q Consensus 117 ~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~ 195 (388)
|++||.+.+ |++.+++.... .+ ....++++++|||||++|+|+|..|+ +.+
T Consensus 2 P~ipG~~~~-v~~lrtl~Da~-------~l~~~~~~~~~vvIIGgG~iG~E~A~~l~--------------------~~g 53 (121)
T d1d7ya2 2 PTLQGATMP-VHTLRTLEDAR-------RIQAGLRPQSRLLIVGGGVIGLELAATAR--------------------TAG 53 (121)
T ss_dssp GGGTTCSSC-EEECCSHHHHH-------HHHHHCCTTCEEEEECCSHHHHHHHHHHH--------------------HTT
T ss_pred ccCCCCCCC-EEEeCCHHHHH-------HHHHhhhcCCeEEEECcchhHHHHHHHhh--------------------ccc
Confidence 678898754 87766654221 11 12234689999999999999999886 233
Q ss_pred CcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEE
Q psy4525 196 IKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRP 275 (388)
Q Consensus 196 ~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 275 (388)
.+||++.|++.+.....++++++ .+.+.+. ++||++
T Consensus 54 -~~Vtli~~~~~~l~~~~~~~~~~-------------------------------~~~~~l~------------~~GV~i 89 (121)
T d1d7ya2 54 -VHVSLVETQPRLMSRAAPATLAD-------------------------------FVARYHA------------AQGVDL 89 (121)
T ss_dssp -CEEEEEESSSSTTTTTSCHHHHH-------------------------------HHHHHHH------------TTTCEE
T ss_pred -ceEEEEeeccccccccCCHHHHH-------------------------------HHHHHHH------------HCCcEE
Confidence 58999999988765443344332 2222322 689999
Q ss_pred EecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccc
Q psy4525 276 IFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIG 321 (388)
Q Consensus 276 ~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G 321 (388)
+++..++++.. +. +. +.++++++||+||+|+|
T Consensus 90 ~~~~~v~~~~~---~~---v~--------l~dg~~i~~D~vi~a~G 121 (121)
T d1d7ya2 90 RFERSVTGSVD---GV---VL--------LDDGTRIAADMVVVGIG 121 (121)
T ss_dssp EESCCEEEEET---TE---EE--------ETTSCEEECSEEEECSC
T ss_pred EeCCEEEEEeC---CE---EE--------ECCCCEEECCEEEEeeC
Confidence 99999988862 32 22 35667899999999998
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=1.4e-13 Score=108.47 Aligned_cols=124 Identities=21% Similarity=0.324 Sum_probs=91.7
Q ss_pred CCCCCCCCCCCCeeecccccccccCCCCcccc-CcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhc
Q psy4525 115 KKLNIPGEDGKNIISARSFVGWYNGLPEDASL-DLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLST 193 (388)
Q Consensus 115 ~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~ 193 (388)
|.+++||.+ +|.+. +..+|..+ ...+++|+|+|||+|++|+|.|..|+
T Consensus 2 R~L~ipge~--------~~~gk--GV~yca~cD~~~~~gk~V~VvGgG~sA~~~A~~L~--------------------- 50 (126)
T d1fl2a2 2 RNMNVPGED--------QYRTK--GVTYCPHCDGPLFKGKRVAVIGGGNSGVEAAIDLA--------------------- 50 (126)
T ss_dssp CCCCCTTTT--------TTBTT--TEESCHHHHGGGGBTCEEEEECCSHHHHHHHHHHH---------------------
T ss_pred CcCCCCCHH--------HhcCC--CEEEEEecChhhcCCceEEEEeCCHHHHHHHHhhh---------------------
Confidence 578899987 44432 33444443 55678999999999999999999997
Q ss_pred CCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeE
Q psy4525 194 SRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYF 273 (388)
Q Consensus 194 ~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv 273 (388)
.-+++||+++|++.+... +. ..+.+. ...+|
T Consensus 51 ~~a~~V~li~r~~~~~~~---~~-----------------------------------~~~~~~-----------~~~~I 81 (126)
T d1fl2a2 51 GIVEHVTLLEFAPEMKAD---QV-----------------------------------LQDKLR-----------SLKNV 81 (126)
T ss_dssp TTBSEEEEECSSSSCCSC---HH-----------------------------------HHHHHH-----------TCTTE
T ss_pred ccCCceEEEecccccccc---cc-----------------------------------cccccc-----------cccce
Confidence 456899999999865432 11 111111 13579
Q ss_pred EEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEcccc
Q psy4525 274 RPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 274 ~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
++++++.+.++.+++ +.++++++.+. .+++.+++++|.|++++|.
T Consensus 82 ~v~~~~~v~~i~G~~-~~v~~v~l~~~---~tge~~~l~vdgvFv~IGl 126 (126)
T d1fl2a2 82 DIILNAQTTEVKGDG-SKVVGLEYRDR---VSGDIHNIELAGIFVQIGL 126 (126)
T ss_dssp EEESSEEEEEEEESS-SSEEEEEEEET---TTCCEEEEECSEEEECSCE
T ss_pred eEEcCcceEEEEccc-cceeeEEEEEC---CCCCEEEEECCEEEEEeCC
Confidence 999999999999753 57899988754 2677889999999999984
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.48 E-value=2.6e-15 Score=130.35 Aligned_cols=149 Identities=11% Similarity=0.127 Sum_probs=92.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcc---------------------------
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPE--------------------------- 64 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~--------------------------- 64 (388)
.+||+||||||||++||.++++ .|.+|+|||++ .+||.| +.++.|....
T Consensus 2 ~yDvvVIG~G~aG~~aA~~a~~--~G~kV~iiE~~-~~GGtc~~~gc~p~k~l~~~a~~~~~~~~~~~~~g~~~~~~~~~ 78 (217)
T d1gesa1 2 HYDYIAIGGGSGGIASINRAAM--YGQKCALIEAK-ELGGTCVNVGCVPKKVMWHAAQIREAIHMYGPDYGFDTTINKFN 78 (217)
T ss_dssp EEEEEEECCSHHHHHHHHHHHT--TTCCEEEEESS-CTTHHHHHHSHHHHHHHHHHHHHHHHHHTTGGGGTEEEEEEEEC
T ss_pred cCCEEEECCCHHHHHHHHHHHH--CCCEEEEEecc-CcCCeEecccccccccchhhHHHHHHHHhhhhhcCccCCccccc
Confidence 4799999999999999999999 89999999996 588876 4454432100
Q ss_pred hh-----------HHHHHHHHhhcCCCcEEEceEEEEEE---eeecccccccCEEEEeeCCCCCCCCCCCCCCCC-----
Q psy4525 65 VK-----------NVINTFTKTGDNPRVNFYGNICLGQD---ISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGK----- 125 (388)
Q Consensus 65 ~~-----------~~~~~~~~~~~~~~i~~~~~~~v~~~---~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~----- 125 (388)
.. .+...+...+++.++++......... .........++.+++|||+.| ..|++|+.+.-
T Consensus 79 ~~~~~~~~~~~v~~~~~~~~~~l~~~gV~v~~~~~~~~~~~~~~~~~~~~~~~~~iiatG~~p-~ip~ip~~~~l~l~~~ 157 (217)
T d1gesa1 79 WETLIASRTAYIDRIHTSYENVLGKNNVDVIKGFARFVDAKTLEVNGETITADHILIATGGRP-SHPREPANDNINLEAA 157 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCEEEETTEEEETTEEEEEEEEEECCCEEE-CCCEEESCTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCeEEEEeeecccceeeeecCCCceeeeeeeeeecCccc-cCCCCCCcCCcccccc
Confidence 01 11122333455667776544322111 222233347889999999987 47777765421
Q ss_pred CeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhc
Q psy4525 126 NIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILL 172 (388)
Q Consensus 126 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~ 172 (388)
++.+..... + .. . .......++|.|||+|.+|+|+|..++
T Consensus 158 gv~~~~~~~--i-~~---d-~~~~t~~~~i~~iG~g~~g~ela~~~~ 197 (217)
T d1gesa1 158 GVKTNEKGY--I-VV---D-KYQNTNIEGIYAVGDNTGAVELTPVAV 197 (217)
T ss_dssp TCCBCTTSC--B-CC---C-TTSBCSSTTEEECSGGGTSCCCHHHHH
T ss_pred cEEEcCCcc--E-ee---C-chhccCCCcEEEECCCccHHHHHHHHH
Confidence 121111100 0 00 0 012233578999999999999888654
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=99.47 E-value=3.5e-13 Score=105.23 Aligned_cols=116 Identities=9% Similarity=0.162 Sum_probs=81.8
Q ss_pred CCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEE
Q psy4525 122 EDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNL 201 (388)
Q Consensus 122 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 201 (388)
.+.++++++.+.+. ....+++++|||||++|+|+|..|+ +.| .+||+
T Consensus 4 ~d~~~v~~s~~~l~------------l~~~p~~i~IiG~G~ig~E~A~~l~--------------------~~G-~~Vti 50 (119)
T d3lada2 4 VDQDVIVDSTGALD------------FQNVPGKLGVIGAGVIGLELGSVWA--------------------RLG-AEVTV 50 (119)
T ss_dssp CCSSSEEEHHHHTS------------CSSCCSEEEEECCSHHHHHHHHHHH--------------------HTT-CEEEE
T ss_pred CCCCEEEchhHhhC------------cccCCCeEEEECCChHHHHHHHHHH--------------------HcC-CceEE
Confidence 34567888888762 2234699999999999999999886 233 57999
Q ss_pred EeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcc
Q psy4525 202 VGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSP 281 (388)
Q Consensus 202 i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~ 281 (388)
+.|++++...+ ++++.+ .+.+.+. +.||++++++.+
T Consensus 51 v~~~~~ll~~~-d~ei~~-------------------------------~l~~~l~------------~~Gv~i~~~~~v 86 (119)
T d3lada2 51 LEAMDKFLPAV-DEQVAK-------------------------------EAQKILT------------KQGLKILLGARV 86 (119)
T ss_dssp EESSSSSSTTS-CHHHHH-------------------------------HHHHHHH------------HTTEEEEETCEE
T ss_pred EEeecccCCcc-cchhHH-------------------------------HHHHHHH------------hcCceeecCcEE
Confidence 99998875443 333322 2222322 689999999999
Q ss_pred eeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccc
Q psy4525 282 TEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIG 321 (388)
Q Consensus 282 ~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G 321 (388)
+++..++++. .+++.+ .++++++.||.|++|+|
T Consensus 87 ~~i~~~~~~v--~v~~~~-----~~~~~~~~~D~vlvAvG 119 (119)
T d3lada2 87 TGTEVKNKQV--TVKFVD-----AEGEKSQAFDKLIVAVG 119 (119)
T ss_dssp EEEEECSSCE--EEEEES-----SSEEEEEEESEEEECSC
T ss_pred EEEEEeCCEE--EEEEEE-----CCCCEEEECCEEEEeeC
Confidence 9998765442 233322 34557899999999998
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=1.1e-13 Score=107.63 Aligned_cols=96 Identities=16% Similarity=0.204 Sum_probs=71.3
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEec
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFR 231 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~ 231 (388)
+++++|||||++|+|+|..|+ +.| .+||++.|++.+...+. +++.
T Consensus 21 p~~vvIiGgG~ig~E~A~~l~--------------------~~G-~~Vtlve~~~~~l~~~d-~~~~------------- 65 (116)
T d1gesa2 21 PERVAVVGAGYIGVELGGVIN--------------------GLG-AKTHLFEMFDAPLPSFD-PMIS------------- 65 (116)
T ss_dssp CSEEEEECCSHHHHHHHHHHH--------------------HTT-CEEEEECSSSSSSTTSC-HHHH-------------
T ss_pred CCEEEEECCChhhHHHHHHhh--------------------ccc-cEEEEEeecchhhhhcc-hhhH-------------
Confidence 689999999999999999876 244 47999999987654332 2221
Q ss_pred ccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEE
Q psy4525 232 NEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELI 311 (388)
Q Consensus 232 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l 311 (388)
+.+.+.+. ++||++++++.++++..++++.+ .+++ .+++++
T Consensus 66 ------------------~~~~~~l~------------~~GV~~~~~~~v~~i~~~~~~~~-~v~~--------~~g~~~ 106 (116)
T d1gesa2 66 ------------------ETLVEVMN------------AEGPQLHTNAIPKAVVKNTDGSL-TLEL--------EDGRSE 106 (116)
T ss_dssp ------------------HHHHHHHH------------HHSCEEECSCCEEEEEECTTSCE-EEEE--------TTSCEE
T ss_pred ------------------HHHHHHHH------------HCCCEEEeCCEEEEEEEcCCcEE-EEEE--------CCCCEE
Confidence 23333333 68999999999999987655554 3443 455689
Q ss_pred ecceEEEccc
Q psy4525 312 PSGIAFRSIG 321 (388)
Q Consensus 312 ~~D~Vi~a~G 321 (388)
++|.||+|||
T Consensus 107 ~~D~vi~a~G 116 (116)
T d1gesa2 107 TVDCLIWAIG 116 (116)
T ss_dssp EESEEEECSC
T ss_pred EcCEEEEecC
Confidence 9999999998
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.45 E-value=3e-13 Score=106.06 Aligned_cols=116 Identities=13% Similarity=0.166 Sum_probs=84.3
Q ss_pred CCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEe
Q psy4525 124 GKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVG 203 (388)
Q Consensus 124 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~ 203 (388)
..+++++.+++.. ...+++++|||||++|+|+|..|+ +.| .+||++.
T Consensus 7 ~~~v~ts~~~~~l------------~~~p~~~vIiG~G~ig~E~A~~l~--------------------~lG-~~Vtii~ 53 (122)
T d1v59a2 7 EEKIVSSTGALSL------------KEIPKRLTIIGGGIIGLEMGSVYS--------------------RLG-SKVTVVE 53 (122)
T ss_dssp SSSEECHHHHTTC------------SSCCSEEEEECCSHHHHHHHHHHH--------------------HTT-CEEEEEC
T ss_pred CCEEEehHHhhCc------------ccCCCeEEEECCCchHHHHHHHHH--------------------hhC-cceeEEE
Confidence 4567777766521 223689999999999999999886 233 5799999
Q ss_pred ecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCccee
Q psy4525 204 RRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTE 283 (388)
Q Consensus 204 r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~ 283 (388)
|++.+...+ ++++.+ .+.+.+. ++||++++++.+++
T Consensus 54 ~~~~~l~~~-d~ei~~-------------------------------~l~~~l~------------~~GV~i~~~~~v~~ 89 (122)
T d1v59a2 54 FQPQIGASM-DGEVAK-------------------------------ATQKFLK------------KQGLDFKLSTKVIS 89 (122)
T ss_dssp SSSSSSSSS-CHHHHH-------------------------------HHHHHHH------------HTTCEEECSEEEEE
T ss_pred eccccchhh-hhhhHH-------------------------------HHHHHHH------------hccceEEeCCEEEE
Confidence 999876543 334332 2222332 67999999999999
Q ss_pred eeeCCCCceeEEEEccCccccCCceeEEecceEEEc
Q psy4525 284 FKLNDNGAITGINFANQQALVTEDTELIPSGIAFRS 319 (388)
Q Consensus 284 i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a 319 (388)
+..++++....+.+.+++ +++.++++||.|++|
T Consensus 90 v~~~~~~~~v~~~~~~~~---~~~~~~ie~D~vlvA 122 (122)
T d1v59a2 90 AKRNDDKNVVEIVVEDTK---TNKQENLEAEVLLVA 122 (122)
T ss_dssp EEEETTTTEEEEEEEETT---TTEEEEEEESEEEEC
T ss_pred EEEeCCCcEEEEEEEeCC---CCCeEEEEeCEEEEC
Confidence 988766777677665542 567789999999987
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.44 E-value=3.7e-13 Score=104.64 Aligned_cols=116 Identities=14% Similarity=0.194 Sum_probs=80.8
Q ss_pred CCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCC
Q psy4525 116 KLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSR 195 (388)
Q Consensus 116 ~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~ 195 (388)
.|++||.+ .++++.++... ..+++|+|||||++|+|+|..|+ ..
T Consensus 1 ~P~IpG~e--~~~ts~~~~~l-------------~~p~~v~IiGgG~iG~E~A~~l~---------------------~~ 44 (117)
T d1onfa2 1 FPPVKGIE--NTISSDEFFNI-------------KESKKIGIVGSGYIAVELINVIK---------------------RL 44 (117)
T ss_dssp CCSCTTGG--GCEEHHHHTTC-------------CCCSEEEEECCSHHHHHHHHHHH---------------------TT
T ss_pred CcccCCHh--HcCchhHHhcc-------------CCCCEEEEECCchHHHHHHHHHH---------------------hc
Confidence 36788864 56666665521 12689999999999999999886 33
Q ss_pred CcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEE
Q psy4525 196 IKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRP 275 (388)
Q Consensus 196 ~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~ 275 (388)
..+||+++|++++...| ++++++ .+.+.+. ++||++
T Consensus 45 g~~Vtlv~~~~~il~~~-d~~~~~-------------------------------~~~~~l~------------~~gV~i 80 (117)
T d1onfa2 45 GIDSYIFARGNRILRKF-DESVIN-------------------------------VLENDMK------------KNNINI 80 (117)
T ss_dssp TCEEEEECSSSSSCTTS-CHHHHH-------------------------------HHHHHHH------------HTTCEE
T ss_pred cccceeeehhccccccc-cHHHHH-------------------------------HHHHHHH------------hCCCEE
Confidence 46899999998876443 344432 2222332 679999
Q ss_pred EecCcceeeeeCCCCceeEEEEccCccccCCceeEE-ecceEEEcc
Q psy4525 276 IFLRSPTEFKLNDNGAITGINFANQQALVTEDTELI-PSGIAFRSI 320 (388)
Q Consensus 276 ~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l-~~D~Vi~a~ 320 (388)
++++.++++...+++.+ .+++ .+++.+ ++|.||||+
T Consensus 81 ~~~~~v~~i~~~~~~~~-~v~~--------~~G~~~~~~D~Vi~AI 117 (117)
T d1onfa2 81 VTFADVVEIKKVSDKNL-SIHL--------SDGRIYEHFDHVIYCV 117 (117)
T ss_dssp ECSCCEEEEEESSTTCE-EEEE--------TTSCEEEEESEEEECC
T ss_pred EECCEEEEEEEcCCCeE-EEEE--------CCCCEEEeCCEEEEeC
Confidence 99999999987655544 3443 444555 579999985
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=99.43 E-value=1.5e-13 Score=108.02 Aligned_cols=123 Identities=16% Similarity=0.221 Sum_probs=83.8
Q ss_pred CCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcE
Q psy4525 119 IPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKS 198 (388)
Q Consensus 119 i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (388)
+||.+.++||+.+.+..... .........+++|+|||||++|+|+|..|+ +.+ .+
T Consensus 1 IPG~d~~~v~~~~~~~da~~----i~~~~~~~~~k~vvViGgG~iG~E~A~~l~--------------------~~g-~~ 55 (123)
T d1nhpa2 1 IPGKDLDNIYLMRGRQWAIK----LKQKTVDPEVNNVVVIGSGYIGIEAAEAFA--------------------KAG-KK 55 (123)
T ss_dssp STTTTSBSEECCCHHHHHHH----HHHHHTCTTCCEEEEECCSHHHHHHHHHHH--------------------HTT-CE
T ss_pred CcCCCCCCeEEeCCHHHHHH----HHHHhhccCCCEEEEECChHHHHHHHHHhh--------------------ccc-eE
Confidence 68888999997766542111 000012234789999999999999999886 234 57
Q ss_pred EEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEec
Q psy4525 199 VNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFL 278 (388)
Q Consensus 199 V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~ 278 (388)
||++.|.+++...+.++++.+ .+.+.+. ++||+++++
T Consensus 56 Vtlie~~~~~l~~~~d~~~~~-------------------------------~~~~~l~------------~~gv~~~~~ 92 (123)
T d1nhpa2 56 VTVIDILDRPLGVYLDKEFTD-------------------------------VLTEEME------------ANNITIATG 92 (123)
T ss_dssp EEEEESSSSTTTTTCCHHHHH-------------------------------HHHHHHH------------TTTEEEEES
T ss_pred EEEEEecCcccccccchhhHH-------------------------------HHHHHhh------------cCCeEEEeC
Confidence 999999987765544444332 1222222 679999999
Q ss_pred CcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEcc
Q psy4525 279 RSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSI 320 (388)
Q Consensus 279 ~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~ 320 (388)
+.++++..+ +.+..+. .++++++||.||+|+
T Consensus 93 ~~v~~i~~~--~~~~~v~---------~dg~~i~~D~vi~aI 123 (123)
T d1nhpa2 93 ETVERYEGD--GRVQKVV---------TDKNAYDADLVVVAV 123 (123)
T ss_dssp CCEEEEECS--SBCCEEE---------ESSCEEECSEEEECS
T ss_pred ceEEEEEcC--CCEEEEE---------eCCCEEECCEEEEEC
Confidence 999999853 4554442 344689999999985
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=99.42 E-value=2.5e-13 Score=125.64 Aligned_cols=103 Identities=16% Similarity=0.202 Sum_probs=72.4
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCC-------------------------------
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVA------------------------------- 59 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~------------------------------- 59 (388)
...|+|+|||||+|||+||..|++...+.+|+||||.+.+||.|.+...
T Consensus 2 ~~~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 81 (335)
T d2gv8a1 2 PTIRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNYTSTLSNKLPVPSTNPILTTEPIVGPAALPVYPSP 81 (335)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSCCSCCCSCCCSSBCCTTCCCCCBCCSSSCCBCCCC
T ss_pred CCCCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccccCCCCcccCCcccccccccccccccccccccccc
Confidence 4558999999999999999999883233699999999999999854110
Q ss_pred -------------------------CCCcchhHHHHHHHHhhcCCCcEEEceEEEEEE--------eeeccc-------c
Q psy4525 60 -------------------------PDHPEVKNVINTFTKTGDNPRVNFYGNICLGQD--------ISLGDL-------T 99 (388)
Q Consensus 60 -------------------------p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~--------~~~~~~-------~ 99 (388)
+.++...++.+++..+++..+..+++++.|... ++..+. .
T Consensus 82 ~y~~l~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~yl~~~~~~~~~~I~~~t~V~~v~~~~~~w~Vt~~~~~~~~~~~~ 161 (335)
T d2gv8a1 82 LYRDLQTNTPIELMGYCDQSFKPQTLQFPHRHTIQEYQRIYAQPLLPFIKLATDVLDIEKKDGSWVVTYKGTKAGSPISK 161 (335)
T ss_dssp CCTTCBCSSCHHHHSCTTCCCCTTCCSSCBHHHHHHHHHHHHGGGGGGEECSEEEEEEEEETTEEEEEEEESSTTCCEEE
T ss_pred cchhhhcCCcHhhhhhhhhcCCcccccCCchHHHHHHHHHHHHHhhhcccCceEEEEEEecCCEEEEEEEecCCCCeEEE
Confidence 011224566777777777777778888877421 333221 1
Q ss_pred cccCEEEEeeCCCC
Q psy4525 100 NAYHAVVLTYGADN 113 (388)
Q Consensus 100 ~~yd~lvlAtG~~~ 113 (388)
..||+||+|||...
T Consensus 162 ~~~d~VI~AtG~~s 175 (335)
T d2gv8a1 162 DIFDAVSICNGHYE 175 (335)
T ss_dssp EEESEEEECCCSSS
T ss_pred EEeeEEEEcccccc
Confidence 25899999999643
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=99.42 E-value=7.1e-13 Score=103.20 Aligned_cols=101 Identities=21% Similarity=0.271 Sum_probs=72.7
Q ss_pred CCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEe
Q psy4525 151 DCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVF 230 (388)
Q Consensus 151 ~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~ 230 (388)
.+++++|||||++|+|+|..|+ .+...+ .+|+++.|++.+...+. ++++
T Consensus 17 ~p~~v~IiGgG~ig~E~A~~l~-----------------~~~~~g-~~Vtli~~~~~il~~~d-~~~~------------ 65 (117)
T d1feca2 17 APKRALCVGGGYISIEFAGIFN-----------------AYKARG-GQVDLAYRGDMILRGFD-SELR------------ 65 (117)
T ss_dssp CCSEEEEECSSHHHHHHHHHHH-----------------HHSCTT-CEEEEEESSSSSSTTSC-HHHH------------
T ss_pred cCCeEEEECCChHHHHHHHHhH-----------------hhcccc-cccceeccccccccccc-chhh------------
Confidence 3689999999999999998765 222223 57999999988764432 2332
Q ss_pred cccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeE
Q psy4525 231 RNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTEL 310 (388)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~ 310 (388)
+.+.+.+. ++||++++++.++++..++++. ..+. ..++++
T Consensus 66 -------------------~~~~~~l~------------~~GI~v~~~~~v~~i~~~~~g~-~~v~--------~~~g~~ 105 (117)
T d1feca2 66 -------------------KQLTEQLR------------ANGINVRTHENPAKVTKNADGT-RHVV--------FESGAE 105 (117)
T ss_dssp -------------------HHHHHHHH------------HTTEEEEETCCEEEEEECTTSC-EEEE--------ETTSCE
T ss_pred -------------------HHHHHHHh------------hCcEEEEcCCEEEEEEECCCCE-EEEE--------ECCCCE
Confidence 22223333 6899999999999998765454 3454 355678
Q ss_pred EecceEEEcccc
Q psy4525 311 IPSGIAFRSIGY 322 (388)
Q Consensus 311 l~~D~Vi~a~G~ 322 (388)
++||.||+|+|.
T Consensus 106 i~~D~Vi~a~GR 117 (117)
T d1feca2 106 ADYDVVMLAIGR 117 (117)
T ss_dssp EEESEEEECSCE
T ss_pred EEcCEEEEecCC
Confidence 999999999994
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=99.41 E-value=3.4e-13 Score=106.03 Aligned_cols=123 Identities=13% Similarity=0.148 Sum_probs=84.3
Q ss_pred CCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcC
Q psy4525 115 KKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTS 194 (388)
Q Consensus 115 ~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
+.|.+|+ .++++++.+++. ....+++++|||||++|+|+|..++ +.
T Consensus 3 ~lP~ip~--~~~i~ts~~~l~------------l~~~p~~vvIiGgG~IG~E~A~~~~--------------------~~ 48 (125)
T d1ojta2 3 KLPFIPE--DPRIIDSSGALA------------LKEVPGKLLIIGGGIIGLEMGTVYS--------------------TL 48 (125)
T ss_dssp CCSSCCC--CTTEECHHHHTT------------CCCCCSEEEEESCSHHHHHHHHHHH--------------------HH
T ss_pred CCCCCCC--CCcEEcHHHhhC------------ccccCCeEEEECCCHHHHHHHHHhh--------------------cC
Confidence 3556664 356777777652 2234789999999999999999776 23
Q ss_pred CCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEE
Q psy4525 195 RIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFR 274 (388)
Q Consensus 195 ~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 274 (388)
| .+||++.+++.+...+ ++++.+ .+.+.+ .++||+
T Consensus 49 G-~~Vtive~~~~il~~~-d~~~~~-------------------------------~l~~~l------------~~~gv~ 83 (125)
T d1ojta2 49 G-SRLDVVEMMDGLMQGA-DRDLVK-------------------------------VWQKQN------------EYRFDN 83 (125)
T ss_dssp T-CEEEEECSSSSSSTTS-CHHHHH-------------------------------HHHHHH------------GGGEEE
T ss_pred C-CEEEEEEeeccccccc-hhhHHH-------------------------------HHHHHH------------HHcCcc
Confidence 3 5799999998876543 333322 122222 278999
Q ss_pred EEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEcccc
Q psy4525 275 PIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 275 ~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
+++++.++++..++++. .+.+.+. .+..++++||.|++|+|.
T Consensus 84 ~~~~~~v~~v~~~~~g~--~v~~~~~----~g~~~~i~~D~vl~A~GR 125 (125)
T d1ojta2 84 IMVNTKTVAVEPKEDGV--YVTFEGA----NAPKEPQRYDAVLVAAGR 125 (125)
T ss_dssp EECSCEEEEEEEETTEE--EEEEESS----SCCSSCEEESCEEECCCE
T ss_pred cccCcEEEEEEEcCCcE--EEEEEeC----CCCeEEEEcCEEEEecCC
Confidence 99999999998765443 2333221 244468999999999994
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=99.38 E-value=7.8e-13 Score=104.13 Aligned_cols=105 Identities=22% Similarity=0.284 Sum_probs=77.6
Q ss_pred CcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCc
Q psy4525 147 DLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHV 226 (388)
Q Consensus 147 ~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~ 226 (388)
...+++|+|+|||+|++|+|.|..|+ ..+++||+++|++.+... +
T Consensus 22 ~~~~~~k~V~VvGgGdsA~e~A~~L~---------------------~~a~~V~li~r~~~~~~~---~----------- 66 (126)
T d1trba2 22 GFFYRNQKVAVIGGGNTAVEEALYLS---------------------NIASEVHLIHRRDGFRAE---K----------- 66 (126)
T ss_dssp GGGGTTSEEEEECSSHHHHHHHHHHT---------------------TTSSEEEEECSSSSCCCC---H-----------
T ss_pred hHHhCCCEEEEECCCHHHHHHHHHHh---------------------hcCCcEEEEeecccccch---h-----------
Confidence 45568999999999999999999997 556899999999865332 1
Q ss_pred eEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCC
Q psy4525 227 QTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTE 306 (388)
Q Consensus 227 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~ 306 (388)
...+++.+... ..++.+++++.+.++.++ +..++++++.+.+ ..+
T Consensus 67 --------------------~~~~~~~~~~~------------~~~i~~~~~~~v~~i~G~-~~~v~~v~l~~~~--~~e 111 (126)
T d1trba2 67 --------------------ILIKRLMDKVE------------NGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQ--NSD 111 (126)
T ss_dssp --------------------HHHHHHHHHHH------------TSSEEEECSCEEEEEEEC-SSSEEEEEEECCT--TCC
T ss_pred --------------------HHHHHHHHhhc------------ccceeEecceEEEEEECC-CCceEEEEEEECC--CCc
Confidence 11122222211 578999999999999975 3569999987642 123
Q ss_pred ceeEEecceEEEccc
Q psy4525 307 DTELIPSGIAFRSIG 321 (388)
Q Consensus 307 ~~~~l~~D~Vi~a~G 321 (388)
+.+.+++|.|++++|
T Consensus 112 ~~~~l~~dgvFv~iG 126 (126)
T d1trba2 112 NIESLDVAGLFVAIG 126 (126)
T ss_dssp CCEEEECSEEEECSC
T ss_pred eEEEEECCEEEEEeC
Confidence 346899999999988
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.38 E-value=1.3e-12 Score=101.68 Aligned_cols=117 Identities=11% Similarity=0.205 Sum_probs=80.0
Q ss_pred CCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCC
Q psy4525 117 LNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRI 196 (388)
Q Consensus 117 ~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (388)
|++|+.+ +++++.+++. ....+++++|||||++|+|+|..|+ +.|
T Consensus 1 P~~~~~~--~i~~s~~~l~------------~~~~p~~v~IiGgG~ig~E~A~~l~--------------------~~G- 45 (117)
T d1ebda2 1 PNFKFSN--RILDSTGALN------------LGEVPKSLVVIGGGYIGIELGTAYA--------------------NFG- 45 (117)
T ss_dssp TTBCCCS--SEECHHHHHT------------CSSCCSEEEEECCSHHHHHHHHHHH--------------------HTT-
T ss_pred CcCCCCC--CEEChhHhhC------------hhhcCCeEEEECCCccceeeeeeec--------------------ccc-
Confidence 3455543 6777777662 2234689999999999999999886 234
Q ss_pred cEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEE
Q psy4525 197 KSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPI 276 (388)
Q Consensus 197 ~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~ 276 (388)
.+||+++|++.+...+. +++. +.+.+.+. ++||+++
T Consensus 46 ~~Vtlve~~~~il~~~d-~~~~-------------------------------~~l~~~l~------------~~GI~i~ 81 (117)
T d1ebda2 46 TKVTILEGAGEILSGFE-KQMA-------------------------------AIIKKRLK------------KKGVEVV 81 (117)
T ss_dssp CEEEEEESSSSSSTTSC-HHHH-------------------------------HHHHHHHH------------HTTCEEE
T ss_pred cEEEEEEecceeccccc-chhH-------------------------------HHHHHHHH------------hcCCEEE
Confidence 57999999998765433 2222 22233333 6899999
Q ss_pred ecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEc
Q psy4525 277 FLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRS 319 (388)
Q Consensus 277 ~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a 319 (388)
+++.++++..++++.. +.+. ..++.++++||.|+++
T Consensus 82 ~~~~v~~i~~~~~~~~--v~~~-----~~g~~~~i~~D~Vlvs 117 (117)
T d1ebda2 82 TNALAKGAEEREDGVT--VTYE-----ANGETKTIDADYVLVT 117 (117)
T ss_dssp ESEEEEEEEEETTEEE--EEEE-----ETTEEEEEEESEEEEC
T ss_pred cCCEEEEEEEcCCEEE--EEEE-----eCCCEEEEEeEEEEEC
Confidence 9999999987554322 3321 1356678999999975
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.37 E-value=2.1e-12 Score=100.46 Aligned_cols=99 Identities=17% Similarity=0.263 Sum_probs=70.3
Q ss_pred CCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEe
Q psy4525 151 DCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVF 230 (388)
Q Consensus 151 ~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~ 230 (388)
.+++++|||||++|+|+|..|. .+...+ .+||++.|++.+...| ++++.
T Consensus 19 ~p~~v~ivGgG~ig~E~A~~l~-----------------~l~~~~-~~Vtli~~~~~iL~~~-d~~~~------------ 67 (117)
T d1aoga2 19 PPRRVLTVGGGFISVEFAGIFN-----------------AYKPKD-GQVTLCYRGEMILRGF-DHTLR------------ 67 (117)
T ss_dssp CCSEEEEECSSHHHHHHHHHHH-----------------HHCCTT-CEEEEEESSSSSSTTS-CHHHH------------
T ss_pred cCCeEEEECCcHHHHHHHHHhh-----------------hcccCC-cEEEEEeccchhhccc-chHHH------------
Confidence 3689999999999999998764 222222 4799999998875433 23332
Q ss_pred cccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeE
Q psy4525 231 RNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTEL 310 (388)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~ 310 (388)
+.+.+.+. ++||++++++.++++...+++.+ .+. +.+|++
T Consensus 68 -------------------~~l~~~l~------------~~GV~v~~~~~v~~ie~~~~~~~-~v~--------~~~G~~ 107 (117)
T d1aoga2 68 -------------------EELTKQLT------------ANGIQILTKENPAKVELNADGSK-SVT--------FESGKK 107 (117)
T ss_dssp -------------------HHHHHHHH------------HTTCEEEESCCEEEEEECTTSCE-EEE--------ETTSCE
T ss_pred -------------------HHHHHHHH------------hcCcEEEcCCEEEEEEEcCCCeE-EEE--------ECCCcE
Confidence 22233333 68999999999999987655554 344 355678
Q ss_pred EecceEEEcc
Q psy4525 311 IPSGIAFRSI 320 (388)
Q Consensus 311 l~~D~Vi~a~ 320 (388)
++||.||+|+
T Consensus 108 i~~D~Vi~AI 117 (117)
T d1aoga2 108 MDFDLVMMAI 117 (117)
T ss_dssp EEESEEEECS
T ss_pred EEeCEEEEeC
Confidence 9999999985
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.37 E-value=1.2e-13 Score=108.44 Aligned_cols=119 Identities=16% Similarity=0.282 Sum_probs=79.8
Q ss_pred CCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcC
Q psy4525 115 KKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTS 194 (388)
Q Consensus 115 ~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~ 194 (388)
+.|++||.+ ++++.+++..... ++ .....+++++|||||++|+|+|..|+ +.
T Consensus 3 r~p~ipG~e--~~~t~~~~~d~~~-l~-----~~~~~~~~vvIiGgG~iG~E~A~~l~--------------------~~ 54 (122)
T d1xhca2 3 REPQIKGKE--YLLTLRTIFDADR-IK-----ESIENSGEAIIIGGGFIGLELAGNLA--------------------EA 54 (122)
T ss_dssp CCCCSBTGG--GEECCCSHHHHHH-HH-----HHHHHHSEEEEEECSHHHHHHHHHHH--------------------HT
T ss_pred CCcCCCCcc--ceEccCCHHHHHH-HH-----HHhhcCCcEEEECCcHHHHHHHHHhh--------------------cc
Confidence 578899964 6777666542110 00 11123589999999999999999886 23
Q ss_pred CCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEE
Q psy4525 195 RIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFR 274 (388)
Q Consensus 195 ~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~ 274 (388)
+ .+||+++|++.+. ++ +++++ +.+.+.+. ++||+
T Consensus 55 g-~~Vtlv~~~~~l~-~~-d~~~~-------------------------------~~~~~~l~------------~~GV~ 88 (122)
T d1xhca2 55 G-YHVKLIHRGAMFL-GL-DEELS-------------------------------NMIKDMLE------------ETGVK 88 (122)
T ss_dssp T-CEEEEECSSSCCT-TC-CHHHH-------------------------------HHHHHHHH------------HTTEE
T ss_pred c-ceEEEEecccccc-CC-CHHHH-------------------------------HHHHHHHH------------HCCcE
Confidence 3 5799999987754 33 23332 22233333 67999
Q ss_pred EEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEcccc
Q psy4525 275 PIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 275 ~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
+++++.+.++.. ++ + ..+++.+++|.||+|+|.
T Consensus 89 ~~~~~~v~~~~~--~~----v---------~~~~~~i~~D~vi~a~Gv 121 (122)
T d1xhca2 89 FFLNSELLEANE--EG----V---------LTNSGFIEGKVKICAIGI 121 (122)
T ss_dssp EECSCCEEEECS--SE----E---------EETTEEEECSCEEEECCE
T ss_pred EEeCCEEEEEeC--CE----E---------EeCCCEEECCEEEEEEEe
Confidence 999999998863 22 1 124468999999999995
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.36 E-value=3.2e-12 Score=100.78 Aligned_cols=109 Identities=23% Similarity=0.272 Sum_probs=81.8
Q ss_pred CCCCccccC---cCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHH
Q psy4525 139 GLPEDASLD---LSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIK 215 (388)
Q Consensus 139 ~~~~~~~~~---~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~ 215 (388)
+.++|..++ ..+++|+|+|||||++|+|.|..|+ .-+++||+++|++.+... +
T Consensus 18 GVsyca~CDg~a~~frgk~V~VvGgGdsA~e~A~~L~---------------------~~a~~V~li~r~~~~ra~---~ 73 (130)
T d1vdca2 18 GISACAVCDGAAPIFRNKPLAVIGGGDSAMEEANFLT---------------------KYGSKVYIIHRRDAFRAS---K 73 (130)
T ss_dssp TEESCHHHHTTSGGGTTSEEEEECCSHHHHHHHHHHT---------------------TTSSEEEEECSSSSCCSC---H
T ss_pred cEEEEEEecCchHHhCCCEEEEEcCchHHHHHHHHHh---------------------CCCCcEEEEEeccccccc---h
Confidence 445565542 3678999999999999999999997 566899999999876442 1
Q ss_pred HHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCC-CceeE
Q psy4525 216 EFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDN-GAITG 294 (388)
Q Consensus 216 el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~-~~v~~ 294 (388)
. ..+.+. ...+|++++++.+.++.+++. +.+..
T Consensus 74 ~-----------------------------------~~~~l~-----------~~~nI~v~~~~~v~~i~Gd~~~~~v~~ 107 (130)
T d1vdca2 74 I-----------------------------------MQQRAL-----------SNPKIDVIWNSSVVEAYGDGERDVLGG 107 (130)
T ss_dssp H-----------------------------------HHHHHH-----------TCTTEEEECSEEEEEEEESSSSSSEEE
T ss_pred h-----------------------------------hhhccc-----------cCCceEEEeccEEEEEEccCCcccEEE
Confidence 1 111111 146799999999999998643 46888
Q ss_pred EEEccCccccCCceeEEecceEEEcc
Q psy4525 295 INFANQQALVTEDTELIPSGIAFRSI 320 (388)
Q Consensus 295 v~~~~~~~~~~~~~~~l~~D~Vi~a~ 320 (388)
+++.+. .+++.+++++|.|++|+
T Consensus 108 v~l~~~---~tge~~~l~~dGvFVaI 130 (130)
T d1vdca2 108 LKVKNV---VTGDVSDLKVSGLFFAI 130 (130)
T ss_dssp EEEEET---TTCCEEEEECSEEEECS
T ss_pred EEEEEC---CCCCEEEEECCEEEEEC
Confidence 887653 36788899999999985
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.36 E-value=1.4e-12 Score=103.85 Aligned_cols=99 Identities=15% Similarity=0.206 Sum_probs=74.0
Q ss_pred CCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEe
Q psy4525 151 DCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVF 230 (388)
Q Consensus 151 ~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~ 230 (388)
.+++++|||||++|+|+|..|+ +.+ .+||++.+.+++.....++++.+
T Consensus 34 ~~k~v~VIGgG~iG~E~A~~l~--------------------~~g-~~Vtvie~~~~~l~~~~~~~~~~----------- 81 (133)
T d1q1ra2 34 ADNRLVVIGGGYIGLEVAATAI--------------------KAN-MHVTLLDTAARVLERVTAPPVSA----------- 81 (133)
T ss_dssp TTCEEEEECCSHHHHHHHHHHH--------------------HTT-CEEEEECSSSSTTTTTSCHHHHH-----------
T ss_pred cCCEEEEECCchHHHHHHHHHH--------------------hhC-cceeeeeecccccccccchhhhh-----------
Confidence 4789999999999999999886 233 57999999998765544444332
Q ss_pred cccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCC-CCceeEEEEccCccccCCcee
Q psy4525 231 RNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLND-NGAITGINFANQQALVTEDTE 309 (388)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~-~~~v~~v~~~~~~~~~~~~~~ 309 (388)
.+.+.+. ++||++++++.++++.... ++.+..+.+ .+++
T Consensus 82 --------------------~~~~~~~------------~~GV~i~~~~~v~~i~~~~~~~~v~~v~~--------~~G~ 121 (133)
T d1q1ra2 82 --------------------FYEHLHR------------EAGVDIRTGTQVCGFEMSTDQQKVTAVLC--------EDGT 121 (133)
T ss_dssp --------------------HHHHHHH------------HHTCEEECSCCEEEEEECTTTCCEEEEEE--------TTSC
T ss_pred --------------------hhhhccc------------ccccEEEeCCeEEEEEEeCCCceEEEEEC--------CCCC
Confidence 1222222 6899999999999997643 456666654 5566
Q ss_pred EEecceEEEccc
Q psy4525 310 LIPSGIAFRSIG 321 (388)
Q Consensus 310 ~l~~D~Vi~a~G 321 (388)
+++||.||+|+|
T Consensus 122 ~i~~D~vi~a~G 133 (133)
T d1q1ra2 122 RLPADLVIAGIG 133 (133)
T ss_dssp EEECSEEEECCC
T ss_pred EEECCEEEEeeC
Confidence 899999999998
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.35 E-value=1.9e-12 Score=101.56 Aligned_cols=116 Identities=14% Similarity=0.209 Sum_probs=80.7
Q ss_pred CCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEE
Q psy4525 123 DGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLV 202 (388)
Q Consensus 123 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i 202 (388)
+..+++++.+++. ....+++++|||||++|+|+|..|+ +.| .+||++
T Consensus 8 d~~~v~ts~~~l~------------l~~~p~~~viiG~G~iglE~A~~~~--------------------~~G-~~Vtvi 54 (123)
T d1dxla2 8 DEKKIVSSTGALA------------LSEIPKKLVVIGAGYIGLEMGSVWG--------------------RIG-SEVTVV 54 (123)
T ss_dssp CSSSEECHHHHTT------------CSSCCSEEEESCCSHHHHHHHHHHH--------------------HHT-CEEEEE
T ss_pred CCCeEEeHHHhhC------------ccccCCeEEEEccchHHHHHHHHHH--------------------hcC-CeEEEE
Confidence 3456887777662 1223689999999999999999876 233 589999
Q ss_pred eecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcce
Q psy4525 203 GRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPT 282 (388)
Q Consensus 203 ~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~ 282 (388)
+|++.+...+. +++. ..+.+.+. ++||++++++.+.
T Consensus 55 ~~~~~~l~~~d-~~~~-------------------------------~~l~~~l~------------~~GI~i~~~~~v~ 90 (123)
T d1dxla2 55 EFASEIVPTMD-AEIR-------------------------------KQFQRSLE------------KQGMKFKLKTKVV 90 (123)
T ss_dssp CSSSSSSTTSC-HHHH-------------------------------HHHHHHHH------------HSSCCEECSEEEE
T ss_pred EEccccCchhh-hcch-------------------------------hhhhhhhh------------cccceEEcCCceE
Confidence 99998764333 2332 22233333 6899999999999
Q ss_pred eeeeCCCCceeEEEEccCccccCCceeEEecceEEEcc
Q psy4525 283 EFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSI 320 (388)
Q Consensus 283 ~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~ 320 (388)
++..++++....+.... .++.+.++||.|++|+
T Consensus 91 ~i~~~~~~~~v~~~~~~-----~g~~~~i~~D~vLvAA 123 (123)
T d1dxla2 91 GVDTSGDGVKLTVEPSA-----GGEQTIIEADVVLVSA 123 (123)
T ss_dssp EEECSSSSEEEEEEESS-----SCCCEEEEESEEECCC
T ss_pred EEEEccCeEEEEEEECC-----CCeEEEEEcCEEEEcC
Confidence 99876555444444322 3455789999999884
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.34 E-value=7.7e-14 Score=118.68 Aligned_cols=99 Identities=20% Similarity=0.318 Sum_probs=72.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
.+++|+||||||+||+||.+|++ .|+ +|+|||+.+.++|.+++.. +...................+..+.....++
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~--~G~~~V~v~E~~~~~gg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 79 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLAR--LGYSDITIFEKQEYVGGLSTSEI-PQFRLPYDVVNFEIELMKDLGVKIICGKSLS 79 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHH--TTCCCEEEEESSSSCSTHHHHTS-CTTTSCHHHHHHHHHHHHTTTCEEEESCCBS
T ss_pred CCCEEEEECChHHHHHHHHHHHH--CCCCeEEEEEecCcccchhhhhc-cccccccccccchhhhhhccceeEEeeEEec
Confidence 35899999999999999999999 898 5999999999999998877 4444455555555555556667777665553
Q ss_pred EEe-eecc-cccccCEEEEeeCCCC
Q psy4525 91 QDI-SLGD-LTNAYHAVVLTYGADN 113 (388)
Q Consensus 91 ~~~-~~~~-~~~~yd~lvlAtG~~~ 113 (388)
... .... ....++.+++|+|...
T Consensus 80 ~~~~~~~~~~~~~~~~~~ia~g~~~ 104 (196)
T d1gtea4 80 ENEITLNTLKEEGYKAAFIGIGLPE 104 (196)
T ss_dssp TTSBCHHHHHHTTCCEEEECCCCCE
T ss_pred cceeeeehhhccccceeeEEecccc
Confidence 221 1111 1236899999999754
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.34 E-value=1.7e-12 Score=102.11 Aligned_cols=103 Identities=18% Similarity=0.171 Sum_probs=71.1
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEec
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFR 231 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~ 231 (388)
+|+++|||||++|+|+|..|+ ..+ .+||++.|++++...+. +++.
T Consensus 22 pk~vvIvGgG~iG~E~A~~l~--------------------~~G-~~Vtlv~~~~~~l~~~d-~~~~------------- 66 (125)
T d3grsa2 22 PGRSVIVGAGYIAVEMAGILS--------------------ALG-SKTSLMIRHDKVLRSFD-SMIS------------- 66 (125)
T ss_dssp CSEEEEECCSHHHHHHHHHHH--------------------HTT-CEEEEECSSSSSCTTSC-HHHH-------------
T ss_pred CCEEEEEcCCccHHHHHHHHh--------------------cCC-cEEEEEeeccccccchh-hHHH-------------
Confidence 689999999999999999886 234 57999999988754432 2332
Q ss_pred ccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEc-cCccccCCceeE
Q psy4525 232 NEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFA-NQQALVTEDTEL 310 (388)
Q Consensus 232 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~-~~~~~~~~~~~~ 310 (388)
+.+.+.+. ++||++++++.++++..++++....+... .+. .......
T Consensus 67 ------------------~~~~~~l~------------~~Gv~i~~~~~v~~i~~~~~g~~v~~~~~~~g~--~~~~~~~ 114 (125)
T d3grsa2 67 ------------------TNCTEELE------------NAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGR--LPVMTMI 114 (125)
T ss_dssp ------------------HHHHHHHH------------HTTCEEETTEEEEEEEEETTEEEEEEEECCTTS--CCEEEEE
T ss_pred ------------------HHHHHHHH------------HCCCEEEeCCEEEEEEEcCCeEEEEEEEccCCc--CcCcccc
Confidence 22223332 68999999999999987655533333322 221 1223357
Q ss_pred EecceEEEccc
Q psy4525 311 IPSGIAFRSIG 321 (388)
Q Consensus 311 l~~D~Vi~a~G 321 (388)
++||.|++|+|
T Consensus 115 ~~~D~vl~a~G 125 (125)
T d3grsa2 115 PDVDCLLWAIG 125 (125)
T ss_dssp EEESEEEECSC
T ss_pred ccCCEEEEEeC
Confidence 89999999998
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=99.33 E-value=5.1e-13 Score=121.34 Aligned_cols=113 Identities=12% Similarity=0.100 Sum_probs=82.4
Q ss_pred cCCCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCC---------------------------C
Q psy4525 9 ISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAP---------------------------D 61 (388)
Q Consensus 9 ~~~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p---------------------------~ 61 (388)
.|....||+|||||++||++|..|++ .|.+++|||+.+.+||.|.+...| .
T Consensus 3 ~p~~~~dV~IIGAG~sGl~~a~~L~~--~G~~v~i~Ek~~~iGGtW~~n~ypg~~~d~~~~~~~~s~~~~~~~~~~~~~~ 80 (298)
T d1w4xa1 3 QPPEEVDVLVVGAGFSGLYALYRLRE--LGRSVHVIETAGDVGGVWYWNRYPGARCDIESIEYCYSFSEEVLQEWNWTER 80 (298)
T ss_dssp CCCSEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCTHHHHCCCTTCBCSSCTTTSSCCSCHHHHHHCCCCBS
T ss_pred CCCCCCCEEEECccHHHHHHHHHHHh--CCCCEEEEEcCCCcccccccCCCCCceeccccccccccccccccCCCCCccc
Confidence 34556899999999999999999999 899999999999999998432111 1
Q ss_pred CcchhHHHHHHHHhhcCCCc--EEEceEEEEEE----------eeeccc-ccccCEEEEeeCCCC-CCCCCCCCCC
Q psy4525 62 HPEVKNVINTFTKTGDNPRV--NFYGNICLGQD----------ISLGDL-TNAYHAVVLTYGADN-DKKLNIPGED 123 (388)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~i--~~~~~~~v~~~----------~~~~~~-~~~yd~lvlAtG~~~-~~~~~i~g~~ 123 (388)
++..+++..++..+++++++ ++++++.|... ++..+. ...+|.||+|||... +..+.+++.+
T Consensus 81 ~p~~~e~~~Yl~~~a~~~~L~~~I~f~t~V~~~~~de~~~~W~V~~~~~~~~~~~~~i~atG~ls~~~~p~~~~~~ 156 (298)
T d1w4xa1 81 YASQPEILRYINFVADKFDLRSGITFHTTVTAAAFDEATNTWTVDTNHGDRIRARYLIMASGQLSDALTGALFKID 156 (298)
T ss_dssp SCBHHHHHHHHHHHHHHTTGGGGEECSCCEEEEEEETTTTEEEEEETTCCEEEEEEEEECCCSCCCCTTHHHHTSE
T ss_pred cCccchHHHHHHHHHHHcCCcccccCCcEEEEEEEecCCCceeeccccccccccceEEEeecccccccCCcccccc
Confidence 12356788888999988887 58888877432 333332 237899999999533 2344555544
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.30 E-value=6.8e-12 Score=102.01 Aligned_cols=128 Identities=18% Similarity=0.255 Sum_probs=86.2
Q ss_pred CCCeeeccccccccc-----CCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcE
Q psy4525 124 GKNIISARSFVGWYN-----GLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKS 198 (388)
Q Consensus 124 ~~~v~~~~~~~~~~~-----~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (388)
..|++.+.+|+.+.+ .++.+.. .....+++|+|||||++|+|+|..+. +.++++
T Consensus 13 ~~G~~~a~dfL~~~~~~~~~~~~~~~~-~~p~~~~kVvVIGGGdtA~D~A~~a~--------------------r~GA~~ 71 (153)
T d1gtea3 13 DQGFYTSKDFLPLVAKSSKAGMCACHS-PLPSIRGAVIVLGAGDTAFDCATSAL--------------------RCGARR 71 (153)
T ss_dssp TTTEEEHHHHHHHHHHHHCBTTBSCCC-CCCCCCSEEEEECSSHHHHHHHHHHH--------------------HTTCSE
T ss_pred cCCEEEHHHHHHHHHhccccCCCcccC-ccccCCCEEEEECCChhHHHHHHHHH--------------------HcCCcc
Confidence 458999999986432 2222222 23334678999999999999999665 467889
Q ss_pred EEEEeecCcccccCCHHHHHHHhcCCCceEEecccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEec
Q psy4525 199 VNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFL 278 (388)
Q Consensus 199 V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~ 278 (388)
|++++|++....+....+..+. ...++.+++.
T Consensus 72 V~vi~rr~~~~~~a~~~~~~~a------------------------------------------------~~~~~~~~~~ 103 (153)
T d1gtea3 72 VFLVFRKGFVNIRAVPEEVELA------------------------------------------------KEEKCEFLPF 103 (153)
T ss_dssp EEEECSSCGGGCCSCHHHHHHH------------------------------------------------HHTTCEEECS
T ss_pred eeEEEeCChhhhccchhheeec------------------------------------------------ccccceeEec
Confidence 9999999876555444333221 1356778888
Q ss_pred CcceeeeeCCCCceeEEEEc------cCc-cccCCceeEEecceEEEccc
Q psy4525 279 RSPTEFKLNDNGAITGINFA------NQQ-ALVTEDTELIPSGIAFRSIG 321 (388)
Q Consensus 279 ~~~~~i~~~~~~~v~~v~~~------~~~-~~~~~~~~~l~~D~Vi~a~G 321 (388)
..+.++..+ ++++..++.. +++ ...+++..+|+||.||+|+|
T Consensus 104 ~~~~ei~~~-~~~~~~v~~~~~e~d~~G~~~~~~g~e~~i~aD~V~~AiG 152 (153)
T d1gtea3 104 LSPRKVIVK-GGRIVAVQFVRTEQDETGKWNEDEDQIVHLKADVVISAFG 152 (153)
T ss_dssp EEEEEEEEE-TTEEEEEEEEEEEECTTSCEEEEEEEEEEEECSEEEECSC
T ss_pred cccEEEEec-CCceEEEEEEEeeECCCCCEecCCCCEEEEECCEEEECcC
Confidence 888888764 3555555433 121 12356677899999999998
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=99.28 E-value=3e-13 Score=120.56 Aligned_cols=135 Identities=13% Similarity=0.227 Sum_probs=81.2
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCc-------------------------ch--
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHP-------------------------EV-- 65 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~-------------------------~~-- 65 (388)
||++||||||||+.||.++++ .|.+|+|+|+. .+||.| ++||.|... ..
T Consensus 2 yDviVIG~G~aG~~aA~~aa~--~G~~V~liE~~-~~GGtc~n~gciPsK~l~~~~~~~~~~~~~~~~G~~~~~~~~~~~ 78 (259)
T d1onfa1 2 YDLIVIGGGSGGMAAARRAAR--HNAKVALVEKS-RLGGTCVNVGCVPKKIMFNAASVHDILENSRHYGFDTKFSFNLPL 78 (259)
T ss_dssp BSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-STTHHHHHTSHHHHHHHHHHHHHHHHHHHGGGGTCCCCCCCCHHH
T ss_pred ceEEEECCCHHHHHHHHHHHH--CCCeEEEEecC-CCCCeEEeeCCcchHHHHhhhhcccchhccccccccchhhhhhhh
Confidence 699999999999999999999 89999999986 578876 566654210 01
Q ss_pred ---------hHHHHHHHHhhcCCCcEEEceEE-E-E-EEeee--------------cccccccCEEEEeeCCCCCC-CCC
Q psy4525 66 ---------KNVINTFTKTGDNPRVNFYGNIC-L-G-QDISL--------------GDLTNAYHAVVLTYGADNDK-KLN 118 (388)
Q Consensus 66 ---------~~~~~~~~~~~~~~~i~~~~~~~-v-~-~~~~~--------------~~~~~~yd~lvlAtG~~~~~-~~~ 118 (388)
..+...+...+++.+++++.+.. + . ..+.. .+....+|++|+|||+.|.. ++.
T Consensus 79 ~~~~~~~~i~~~~~~~~~~l~~~gV~vi~G~a~f~~~~~v~v~~~~~~~~~~~~~~~~~~i~a~~iiIATGs~P~~~~~~ 158 (259)
T d1onfa1 79 LVERRDKYIQRLNNIYRQNLSKDKVDLYEGTASFLSENRILIKGTKDNNNKDNGPLNEEILEGRNILIAVGNKPVGRSPD 158 (259)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCEEEESCCCCC--------------------------CBSSEEECCCCCBCCBCCT
T ss_pred HHhhhheeeeccccchhhhcccccceEEeeecccccccccccccceeccccccCccceEEEeeeeEEEecCCCCcccccc
Confidence 11122234455667888764421 1 0 00111 11123789999999998731 223
Q ss_pred CCC--CCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHH
Q psy4525 119 IPG--EDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVA 164 (388)
Q Consensus 119 i~g--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg 164 (388)
+|+ .+..++++...+... .. ..+..|+|+|.+|
T Consensus 159 ~~~~~l~~~~i~ts~~~~~~------------d~-~~~t~Vig~gaiG 193 (259)
T d1onfa1 159 TENLKLEKLNVETNNNYIVV------------DE-NQRTSVNNIYAVG 193 (259)
T ss_dssp TTTSSCTTTTCCBSSSCEEE------------CT-TCBCSSSSEEECS
T ss_pred ccccccccceeeeccccccc------------cc-CCceeEeeEEEEE
Confidence 343 444566666655421 11 2345677877665
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.27 E-value=5.1e-12 Score=97.86 Aligned_cols=96 Identities=11% Similarity=0.142 Sum_probs=67.9
Q ss_pred CCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEe
Q psy4525 151 DCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVF 230 (388)
Q Consensus 151 ~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~ 230 (388)
.+++++|||||++|+|+|..|+ +.+ .+||+++|.+.+...+. +++.
T Consensus 20 ~p~~vvIiGgG~~G~E~A~~l~--------------------~~g-~~Vtlve~~~~il~~~d-~~~~------------ 65 (115)
T d1lvla2 20 LPQHLVVVGGGYIGLELGIAYR--------------------KLG-AQVSVVEARERILPTYD-SELT------------ 65 (115)
T ss_dssp CCSEEEEECCSHHHHHHHHHHH--------------------HHT-CEEEEECSSSSSSTTSC-HHHH------------
T ss_pred CCCeEEEECCCHHHHHHHHHHh--------------------hcc-cceEEEeeecccccccc-chhH------------
Confidence 3689999999999999999876 223 57999999988765433 2222
Q ss_pred cccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeE
Q psy4525 231 RNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTEL 310 (388)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~ 310 (388)
+.+.+.+. ++||++++++.++++. ++..... . ..+++++
T Consensus 66 -------------------~~l~~~l~------------~~gV~i~~~~~V~~i~---~~~~~~~-~------~~~~~~~ 104 (115)
T d1lvla2 66 -------------------APVAESLK------------KLGIALHLGHSVEGYE---NGCLLAN-D------GKGGQLR 104 (115)
T ss_dssp -------------------HHHHHHHH------------HHTCEEETTCEEEEEE---TTEEEEE-C------SSSCCCE
T ss_pred -------------------HHHHHHHH------------hhcceEEcCcEEEEEc---CCeEEEE-E------cCCCeEE
Confidence 22233333 6799999999999886 2322111 1 2355578
Q ss_pred EecceEEEccc
Q psy4525 311 IPSGIAFRSIG 321 (388)
Q Consensus 311 l~~D~Vi~a~G 321 (388)
++||.|++|+|
T Consensus 105 i~~D~vi~A~G 115 (115)
T d1lvla2 105 LEADRVLVAVG 115 (115)
T ss_dssp ECCSCEEECCC
T ss_pred EEcCEEEEecC
Confidence 99999999998
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=1.4e-11 Score=98.44 Aligned_cols=102 Identities=13% Similarity=0.083 Sum_probs=72.7
Q ss_pred CCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEe
Q psy4525 151 DCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVF 230 (388)
Q Consensus 151 ~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~ 230 (388)
..++++|||||++|+|+|..|+ ...++.+ .+|+++.+.+.+.....++++.+
T Consensus 36 ~~k~i~IvGgG~~G~E~A~~l~----------------~~~~~~g-~~Vt~i~~~~~~l~~~~~~~~~~----------- 87 (137)
T d1m6ia2 36 EVKSITIIGGGFLGSELACALG----------------RKARALG-TEVIQLFPEKGNMGKILPEYLSN----------- 87 (137)
T ss_dssp HCSEEEEECCSHHHHHHHHHHH----------------HHHHHHT-CEEEEECSSSSTTTTTSCHHHHH-----------
T ss_pred cCCEEEEECCCHHHHHHHHHHH----------------HHHHhcC-CEEEEecccccCCcccCCHHHHH-----------
Confidence 3689999999999999999886 1111223 47999999988765544444332
Q ss_pred cccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeE
Q psy4525 231 RNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTEL 310 (388)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~ 310 (388)
.+.+.+. ++||++++++.++++..++ +.+ .++ +.+|++
T Consensus 88 --------------------~~~~~l~------------~~GV~~~~~~~V~~i~~~~-~~~-~v~--------l~~G~~ 125 (137)
T d1m6ia2 88 --------------------WTMEKVR------------REGVKVMPNAIVQSVGVSS-GKL-LIK--------LKDGRK 125 (137)
T ss_dssp --------------------HHHHHHH------------TTTCEEECSCCEEEEEEET-TEE-EEE--------ETTSCE
T ss_pred --------------------HHHHHHH------------hCCcEEEeCCEEEEEEecC-CEE-EEE--------ECCCCE
Confidence 2222222 6899999999999998643 333 344 355678
Q ss_pred EecceEEEcccc
Q psy4525 311 IPSGIAFRSIGY 322 (388)
Q Consensus 311 l~~D~Vi~a~G~ 322 (388)
++||.||+|+|+
T Consensus 126 i~aD~Vi~A~Gv 137 (137)
T d1m6ia2 126 VETDHIVAAVGL 137 (137)
T ss_dssp EEESEEEECCCE
T ss_pred EECCEEEEeecC
Confidence 999999999995
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=2.6e-11 Score=99.69 Aligned_cols=47 Identities=21% Similarity=0.247 Sum_probs=40.3
Q ss_pred CCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhc
Q psy4525 115 KKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILL 172 (388)
Q Consensus 115 ~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~ 172 (388)
+.|++||.+.++|+++.+|+.. ....+++|+|||||++|+|+|..++
T Consensus 3 r~p~IpG~d~~~V~~a~d~L~~-----------~~~~gkrVvVIGgG~~g~d~a~~~~ 49 (162)
T d1ps9a2 3 RTPPIDGIDHPKVLSYLDVLRD-----------KAPVGNKVAIIGCGGIGFDTAMYLS 49 (162)
T ss_dssp CCCCCBTTTSTTEEEHHHHHTS-----------CCCCCSEEEEECCHHHHHHHHHHHT
T ss_pred CCCCCCCCCCCCeEEHHHHhhC-----------ccccCCceEEEcCchhHHHHHHHHH
Confidence 6889999999999999888731 2235899999999999999999887
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.18 E-value=5.4e-11 Score=92.87 Aligned_cols=102 Identities=17% Similarity=0.171 Sum_probs=68.3
Q ss_pred CCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEe
Q psy4525 151 DCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVF 230 (388)
Q Consensus 151 ~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~ 230 (388)
.+++++|||||++|+|+|..|+ +.| .+||++.|. ++...| ++++.
T Consensus 19 ~P~~vvIIGgG~iG~E~A~~l~--------------------~lG-~~Vtii~~~-~~l~~~-D~~~~------------ 63 (122)
T d1h6va2 19 CPGKTLVVGASYVALECAGFLA--------------------GIG-LDVTVMVRS-ILLRGF-DQDMA------------ 63 (122)
T ss_dssp CCCSEEEECCSHHHHHHHHHHH--------------------HTT-CCEEEEESS-SSSTTS-CHHHH------------
T ss_pred CCCeEEEECCCccHHHHHHHHh--------------------hcC-CeEEEEEec-hhhccC-CHHHH------------
Confidence 4689999999999999999876 244 479999875 443332 33332
Q ss_pred cccccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCC--ceeEEEEccCccccCCce
Q psy4525 231 RNEQLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNG--AITGINFANQQALVTEDT 308 (388)
Q Consensus 231 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~--~v~~v~~~~~~~~~~~~~ 308 (388)
+.+.+.+. ++||++++++.++++...+++ ....+.+..+ ..++.
T Consensus 64 -------------------~~l~~~l~------------~~Gv~i~~~~~v~~~~~~~~~~~~~~~v~~~~~---~~~~~ 109 (122)
T d1h6va2 64 -------------------NKIGEHME------------EHGIKFIRQFVPTKIEQIEAGTPGRLKVTAKST---NSEET 109 (122)
T ss_dssp -------------------HHHHHHHH------------HTTEEEEESCEEEEEEEEECSTTCEEEEEEECT---TSCEE
T ss_pred -------------------HHHHHHHH------------HCCCEEEECCEEEEEEEecCCCccEEEEEEEEC---CCCcE
Confidence 22223333 689999999999998753322 2233333322 13455
Q ss_pred eEEecceEEEccc
Q psy4525 309 ELIPSGIAFRSIG 321 (388)
Q Consensus 309 ~~l~~D~Vi~a~G 321 (388)
..++||.|++|+|
T Consensus 110 ~~~~~D~vl~AiG 122 (122)
T d1h6va2 110 IEDEFNTVLLAVG 122 (122)
T ss_dssp EEEEESEEECCCC
T ss_pred EEEECCEEEEEeC
Confidence 6788999999998
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=99.17 E-value=8.6e-11 Score=91.49 Aligned_cols=89 Identities=19% Similarity=0.205 Sum_probs=70.9
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
...++++|||||+.|+.+|..|++ .|.+|+++|+.+.+. | ....++..+.+.+.+++.|+++++++.+.
T Consensus 28 ~~~~~vvIIGgG~iG~E~A~~l~~--~g~~Vtli~~~~~~l--------~-~~~~~~~~~~~~~~l~~~GV~i~~~~~v~ 96 (121)
T d1d7ya2 28 RPQSRLLIVGGGVIGLELAATART--AGVHVSLVETQPRLM--------S-RAAPATLADFVARYHAAQGVDLRFERSVT 96 (121)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSTT--------T-TTSCHHHHHHHHHHHHTTTCEEEESCCEE
T ss_pred hcCCeEEEECcchhHHHHHHHhhc--ccceEEEEeeccccc--------c-ccCCHHHHHHHHHHHHHCCcEEEeCCEEE
Confidence 446899999999999999999999 899999999997752 2 12345677778888899999999888774
Q ss_pred EE----eeeccccc-ccCEEEEeeC
Q psy4525 91 QD----ISLGDLTN-AYHAVVLTYG 110 (388)
Q Consensus 91 ~~----~~~~~~~~-~yd~lvlAtG 110 (388)
.. +.+.+++. .+|.||+|+|
T Consensus 97 ~~~~~~v~l~dg~~i~~D~vi~a~G 121 (121)
T d1d7ya2 97 GSVDGVVLLDDGTRIAADMVVVGIG 121 (121)
T ss_dssp EEETTEEEETTSCEEECSEEEECSC
T ss_pred EEeCCEEEECCCCEEECCEEEEeeC
Confidence 32 44445443 8999999998
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=99.14 E-value=6.9e-11 Score=91.41 Aligned_cols=88 Identities=17% Similarity=0.237 Sum_probs=69.8
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
..+++++|||||+.|+.+|..|++ .|.+|+++++.+.+. |.. .+++.+++.+.+++.|++++.++.+.
T Consensus 19 ~~p~~vvIiGgG~ig~E~A~~l~~--~G~~Vtlve~~~~~l--------~~~--d~~~~~~~~~~l~~~GV~~~~~~~v~ 86 (116)
T d1gesa2 19 ALPERVAVVGAGYIGVELGGVING--LGAKTHLFEMFDAPL--------PSF--DPMISETLVEVMNAEGPQLHTNAIPK 86 (116)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSS--------TTS--CHHHHHHHHHHHHHHSCEEECSCCEE
T ss_pred hCCCEEEEECCChhhHHHHHHhhc--cccEEEEEeecchhh--------hhc--chhhHHHHHHHHHHCCCEEEeCCEEE
Confidence 456899999999999999999999 899999999987753 322 35677788888888999999988764
Q ss_pred EE---------eeecccc-cccCEEEEeeC
Q psy4525 91 QD---------ISLGDLT-NAYHAVVLTYG 110 (388)
Q Consensus 91 ~~---------~~~~~~~-~~yd~lvlAtG 110 (388)
.. +..++++ ..+|.||+|||
T Consensus 87 ~i~~~~~~~~~v~~~~g~~~~~D~vi~a~G 116 (116)
T d1gesa2 87 AVVKNTDGSLTLELEDGRSETVDCLIWAIG 116 (116)
T ss_dssp EEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred EEEEcCCcEEEEEECCCCEEEcCEEEEecC
Confidence 22 3333333 37999999998
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=99.12 E-value=6.3e-11 Score=104.22 Aligned_cols=99 Identities=16% Similarity=0.187 Sum_probs=69.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceee----------CCC-----------------------
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY----------GVA----------------------- 59 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~----------g~~----------------------- 59 (388)
.+||+||||||||++||..|++ .|++|+|+|+.+.+++.+.. ...
T Consensus 2 ~yDViIIGaG~aGl~aA~~la~--~G~~V~liEk~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (251)
T d2i0za1 2 HYDVIVIGGGPSGLMAAIGAAE--EGANVLLLDKGNKLGRKLAISGGGRCNVTNRLPLDEIVKHIPGNGRFLYSAFSIFN 79 (251)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCHHHHHTGGGTCCCEECSCHHHHHHTCTBTGGGGHHHHHHSC
T ss_pred cCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCcceeccCCcceecccccccchhhcccccchhhhhhhhhhhh
Confidence 4899999999999999999999 89999999999887643210 000
Q ss_pred ------------------------CCCcchhHHHHHHHHhhcCCCcEEEceEEEEEE---------eeecccc-cccCEE
Q psy4525 60 ------------------------PDHPEVKNVINTFTKTGDNPRVNFYGNICLGQD---------ISLGDLT-NAYHAV 105 (388)
Q Consensus 60 ------------------------p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~---------~~~~~~~-~~yd~l 105 (388)
|......++.+.+.+.+++.|++++.++.+... +..++.+ ..+|+|
T Consensus 80 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a~~v 159 (251)
T d2i0za1 80 NEDIITFFENLGVKLKEEDHGRMFPVSNKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHV 159 (251)
T ss_dssp HHHHHHHHHHTTCCEEECGGGEEEETTCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCE
T ss_pred hHHHHHHHHhcCCccccccccceecccccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEecCeE
Confidence 000112455666677777789999988766321 2223332 378999
Q ss_pred EEeeCCCC
Q psy4525 106 VLTYGADN 113 (388)
Q Consensus 106 vlAtG~~~ 113 (388)
|+|||..+
T Consensus 160 I~AtGg~S 167 (251)
T d2i0za1 160 VIAVGGKS 167 (251)
T ss_dssp EECCCCSS
T ss_pred EEccCCcc
Confidence 99999765
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=99.11 E-value=4.8e-11 Score=105.52 Aligned_cols=99 Identities=14% Similarity=0.254 Sum_probs=69.1
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCc--------eee---C--------CCCCC-----------
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGL--------VRY---G--------VAPDH----------- 62 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~--------~~~---g--------~~p~~----------- 62 (388)
.+||+||||||||+.||..|++ .|.+|+|+|+.+.+|+. ++. . ..|.+
T Consensus 4 ~~DViIIGaG~aGl~aA~~la~--~G~~V~vlEk~~~~G~k~~~sGgG~~n~~n~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (253)
T d2gqfa1 4 YSENIIIGAGAAGLFCAAQLAK--LGKSVTVFDNGKKIGRKILMSGGGFCNFTNLEVTPAHYLSQNPHFVKSALARYTNW 81 (253)
T ss_dssp ECSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCHHHHHGGGGTCCCEESSCCGGGEECSCTTSTHHHHHHSCHH
T ss_pred CCcEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCCceEecCCccccccCcccCchhhhccChHHHHHHhhhhccc
Confidence 4799999999999999999999 89999999999887632 110 0 00110
Q ss_pred ------------------------cchhHHHHHHHHhhcCCCcEEEceEEEEEE------------eeecccccccCEEE
Q psy4525 63 ------------------------PEVKNVINTFTKTGDNPRVNFYGNICLGQD------------ISLGDLTNAYHAVV 106 (388)
Q Consensus 63 ------------------------~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~------------~~~~~~~~~yd~lv 106 (388)
....++.+.+.+.+++.++++++++.|... +..+..+..+|+||
T Consensus 82 ~~~~~~~~~g~~~~~~~~~~~~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~a~~VI 161 (253)
T d2gqfa1 82 DFISLVAEQGITYHEKELGQLFCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQNDEKVRFVLQVNSTQWQCKNLI 161 (253)
T ss_dssp HHHHHHHHTTCCEEECSTTEEEETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSCSSCCEEEEETTEEEEESEEE
T ss_pred chhhhhhhcCcceeeecCCccccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCCceeEEEEecCCEEEEeCEEE
Confidence 012345666677777788999988876432 11222233689999
Q ss_pred EeeCCCC
Q psy4525 107 LTYGADN 113 (388)
Q Consensus 107 lAtG~~~ 113 (388)
+|||..+
T Consensus 162 iAtGG~S 168 (253)
T d2gqfa1 162 VATGGLS 168 (253)
T ss_dssp ECCCCSS
T ss_pred EcCCccc
Confidence 9999765
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=99.05 E-value=2e-10 Score=88.67 Aligned_cols=88 Identities=14% Similarity=0.124 Sum_probs=68.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
..+++++|||||+.|+.+|..|++ .|.+|+++|+.+.+. |.+ ..++.+.+.+.+++.|++++.++.+.
T Consensus 19 ~~p~~vvIiGgG~~G~E~A~~l~~--~g~~Vtlve~~~~il--------~~~--d~~~~~~l~~~l~~~gV~i~~~~~V~ 86 (115)
T d1lvla2 19 ALPQHLVVVGGGYIGLELGIAYRK--LGAQVSVVEARERIL--------PTY--DSELTAPVAESLKKLGIALHLGHSVE 86 (115)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHH--HTCEEEEECSSSSSS--------TTS--CHHHHHHHHHHHHHHTCEEETTCEEE
T ss_pred cCCCeEEEECCCHHHHHHHHHHhh--cccceEEEeeecccc--------ccc--cchhHHHHHHHHHhhcceEEcCcEEE
Confidence 456899999999999999999999 899999999997753 432 34577788888888899999998774
Q ss_pred EE-----ee-eccc---ccccCEEEEeeC
Q psy4525 91 QD-----IS-LGDL---TNAYHAVVLTYG 110 (388)
Q Consensus 91 ~~-----~~-~~~~---~~~yd~lvlAtG 110 (388)
.. +. .... ...+|.|++|+|
T Consensus 87 ~i~~~~~~~~~~~~~~~~i~~D~vi~A~G 115 (115)
T d1lvla2 87 GYENGCLLANDGKGGQLRLEADRVLVAVG 115 (115)
T ss_dssp EEETTEEEEECSSSCCCEECCSCEEECCC
T ss_pred EEcCCeEEEEEcCCCeEEEEcCEEEEecC
Confidence 32 11 1111 237899999998
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=99.02 E-value=5e-10 Score=88.61 Aligned_cols=89 Identities=13% Similarity=0.124 Sum_probs=68.6
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
...++++|||||++|+.+|..|++ .|.+|+++|+.+.+. |. ...+++.+.+.+.+++.|+++++++.+.
T Consensus 33 ~~~k~v~VIGgG~iG~E~A~~l~~--~g~~Vtvie~~~~~l--------~~-~~~~~~~~~~~~~~~~~GV~i~~~~~v~ 101 (133)
T d1q1ra2 33 IADNRLVVIGGGYIGLEVAATAIK--ANMHVTLLDTAARVL--------ER-VTAPPVSAFYEHLHREAGVDIRTGTQVC 101 (133)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSTT--------TT-TSCHHHHHHHHHHHHHHTCEEECSCCEE
T ss_pred ccCCEEEEECCchHHHHHHHHHHh--hCcceeeeeeccccc--------cc-ccchhhhhhhhhcccccccEEEeCCeEE
Confidence 346899999999999999999999 899999999987753 21 1244566677777888899999887663
Q ss_pred EE-----------eeecccc-cccCEEEEeeC
Q psy4525 91 QD-----------ISLGDLT-NAYHAVVLTYG 110 (388)
Q Consensus 91 ~~-----------~~~~~~~-~~yd~lvlAtG 110 (388)
.. +.+++++ ..+|.||+|+|
T Consensus 102 ~i~~~~~~~~v~~v~~~~G~~i~~D~vi~a~G 133 (133)
T d1q1ra2 102 GFEMSTDQQKVTAVLCEDGTRLPADLVIAGIG 133 (133)
T ss_dssp EEEECTTTCCEEEEEETTSCEEECSEEEECCC
T ss_pred EEEEeCCCceEEEEECCCCCEEECCEEEEeeC
Confidence 21 3344443 38999999998
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=99.02 E-value=4.1e-10 Score=91.74 Aligned_cols=69 Identities=20% Similarity=0.159 Sum_probs=51.1
Q ss_pred eeCCCCCCCCCCCCCCC--CCeeecccccccccCCCCccccCcCCCCCeEEEE--cCChHHHHHHHHhccCCcccccccC
Q psy4525 108 TYGADNDKKLNIPGEDG--KNIISARSFVGWYNGLPEDASLDLSLDCEEATIL--GQGNVAMDVARILLSPVDQLKSTDI 183 (388)
Q Consensus 108 AtG~~~~~~~~i~g~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVI--GgG~sg~e~a~~L~~~~~~~~~~~~ 183 (388)
|||+.+..+.++||.+. ++++++.+++.. ....++.++|+ |||++|+|+|..|+
T Consensus 4 atG~~~~~~~pipG~~~~~~~v~t~~d~l~~-----------~~~~~~~vvi~d~ggg~ig~e~A~~la----------- 61 (156)
T d1djqa2 4 TDGTNCLTHDPIPGADASLPDQLTPEQVMDG-----------KKKIGKRVVILNADTYFMAPSLAEKLA----------- 61 (156)
T ss_dssp SSCCCTTTSSCCTTCCTTSTTEECHHHHHHT-----------CSCCCSEEEEEECCCSSHHHHHHHHHH-----------
T ss_pred CCCCCCCCCCCCCCccCCCCEEECHHHHhcC-----------ccccCCceEEEecCCChHHHHHHHHHH-----------
Confidence 79998864558999875 468888777621 12235667776 99999999999887
Q ss_pred chhHHHhhhcCCCcEEEEEeecCcc
Q psy4525 184 TEHSLEKLSTSRIKSVNLVGRRGAL 208 (388)
Q Consensus 184 ~~~~~~~~~~~~~~~V~~i~r~~~~ 208 (388)
+.| .+||++.+.+.+
T Consensus 62 ---------~~G-~~Vtlv~~~~~~ 76 (156)
T d1djqa2 62 ---------TAG-HEVTIVSGVHLA 76 (156)
T ss_dssp ---------HTT-CEEEEEESSCTT
T ss_pred ---------HcC-CeEEEEecCCcc
Confidence 345 579999998654
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=99.00 E-value=8.1e-11 Score=101.49 Aligned_cols=41 Identities=24% Similarity=0.297 Sum_probs=38.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
..+||+||||||||++||.++++ .|.+|+|||+.+.+||.+
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~aa~--~G~kV~vie~~~~~GG~~ 42 (221)
T d1dxla1 2 DENDVVIIGGGPGGYVAAIKAAQ--LGFKTTCIEKRGALGGTC 42 (221)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHH--HTCCEEEEECSSSSCCSH
T ss_pred CcCCEEEECCCHHHHHHHHHHHH--CCCcEEEEEecCCCCCee
Confidence 35899999999999999999999 899999999998899875
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=98.98 E-value=1.2e-09 Score=84.71 Aligned_cols=88 Identities=13% Similarity=0.212 Sum_probs=69.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
..+++++|||||+.|+.+|..+++ .|.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+.
T Consensus 20 ~~p~~i~IiG~G~ig~E~A~~l~~--~G~~Vtiv~~~~~ll--------~~--~d~ei~~~l~~~l~~~Gv~i~~~~~v~ 87 (119)
T d3lada2 20 NVPGKLGVIGAGVIGLELGSVWAR--LGAEVTVLEAMDKFL--------PA--VDEQVAKEAQKILTKQGLKILLGARVT 87 (119)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSSS--------TT--SCHHHHHHHHHHHHHTTEEEEETCEEE
T ss_pred cCCCeEEEECCChHHHHHHHHHHH--cCCceEEEEeecccC--------Cc--ccchhHHHHHHHHHhcCceeecCcEEE
Confidence 456899999999999999999999 899999999987642 32 356688888888999999999998764
Q ss_pred EE--------eeeccc----ccccCEEEEeeC
Q psy4525 91 QD--------ISLGDL----TNAYHAVVLTYG 110 (388)
Q Consensus 91 ~~--------~~~~~~----~~~yd~lvlAtG 110 (388)
.. ++.... +..+|.|++|+|
T Consensus 88 ~i~~~~~~v~v~~~~~~~~~~~~~D~vlvAvG 119 (119)
T d3lada2 88 GTEVKNKQVTVKFVDAEGEKSQAFDKLIVAVG 119 (119)
T ss_dssp EEEECSSCEEEEEESSSEEEEEEESEEEECSC
T ss_pred EEEEeCCEEEEEEEECCCCEEEECCEEEEeeC
Confidence 21 222221 237899999998
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.96 E-value=1e-09 Score=85.44 Aligned_cols=86 Identities=14% Similarity=0.112 Sum_probs=67.1
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQD 92 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~~ 92 (388)
.++++|||||+.|+.+|..|++ .|.+|+++++.+.+. + ...++.+.+.+.+++.|++++.++.+...
T Consensus 32 ~~~vvIiGgG~iG~E~A~~l~~--~g~~Vtlv~~~~~l~--------~---~d~~~~~~~~~~l~~~GV~~~~~~~v~~~ 98 (122)
T d1xhca2 32 SGEAIIIGGGFIGLELAGNLAE--AGYHVKLIHRGAMFL--------G---LDEELSNMIKDMLEETGVKFFLNSELLEA 98 (122)
T ss_dssp HSEEEEEECSHHHHHHHHHHHH--TTCEEEEECSSSCCT--------T---CCHHHHHHHHHHHHHTTEEEECSCCEEEE
T ss_pred CCcEEEECCcHHHHHHHHHhhc--ccceEEEEecccccc--------C---CCHHHHHHHHHHHHHCCcEEEeCCEEEEE
Confidence 4789999999999999999999 899999999987652 2 23456777778888889999998776422
Q ss_pred ----eeecccccccCEEEEeeCC
Q psy4525 93 ----ISLGDLTNAYHAVVLTYGA 111 (388)
Q Consensus 93 ----~~~~~~~~~yd~lvlAtG~ 111 (388)
+..+.....+|.+|+|+|.
T Consensus 99 ~~~~v~~~~~~i~~D~vi~a~Gv 121 (122)
T d1xhca2 99 NEEGVLTNSGFIEGKVKICAIGI 121 (122)
T ss_dssp CSSEEEETTEEEECSCEEEECCE
T ss_pred eCCEEEeCCCEEECCEEEEEEEe
Confidence 2223333479999999993
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=98.96 E-value=6.6e-11 Score=99.20 Aligned_cols=79 Identities=11% Similarity=0.076 Sum_probs=52.7
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCCCCC------cccCCCccccCC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVDSDI------PFNEKSCTVIPK 343 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~~~l------~~~~~~gi~l~~ 343 (388)
..+++++++..++++..+. . .+ .+.+++++++|.||+|+|..|++...+. .+..++||.+|+
T Consensus 67 ~~~i~~~~~~~v~~i~~~~--~--~~--------~~~~g~~~~~D~vi~a~G~~p~~~~~~~~~~~~~gl~~~~~I~vd~ 134 (183)
T d1d7ya1 67 APEVEWLLGVTAQSFDPQA--H--TV--------ALSDGRTLPYGTLVLATGAAPRAVLANDALARAAGLACDDGIFVDA 134 (183)
T ss_dssp STTCEEEETCCEEEEETTT--T--EE--------EETTSCEEECSEEEECCCEEECCEEECCHHHHHTTCCBSSSEECCT
T ss_pred cCCeEEEEecccccccccc--c--ee--------EecCCcEeeeeeEEEEEEEEcccccccccccceeeEeeCCcEEecc
Confidence 4689999999998887432 2 12 2456779999999999999998642111 133346788887
Q ss_pred CCCCeecchhhHHhHHHH
Q psy4525 344 EGVPVVTWEGWKAIDKEE 361 (388)
Q Consensus 344 ~~~~~~~~~~w~~~~~~~ 361 (388)
..... ..+.|...|+..
T Consensus 135 ~~~ts-~~~IyA~GD~a~ 151 (183)
T d1d7ya1 135 YGRTT-CPDVYALGDVTR 151 (183)
T ss_dssp TCBCS-STTEEECGGGEE
T ss_pred ceecc-ccccchhhhhhc
Confidence 66432 346666666543
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.95 E-value=2.4e-09 Score=90.58 Aligned_cols=149 Identities=10% Similarity=0.027 Sum_probs=86.7
Q ss_pred eEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEeccc
Q psy4525 154 EATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFRNE 233 (388)
Q Consensus 154 ~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~~~ 233 (388)
||+|||||++|+|+|..|.+ .....+|++++|.+.. ++.+..+.++......
T Consensus 2 KVvIIGgG~~G~e~A~~l~~-------------------~~~~~~V~v~~~~~~~--~~~~~~~~~~l~~~~~------- 53 (198)
T d1nhpa1 2 KVIVLGSSHGGYEAVEELLN-------------------LHPDAEIQWYEKGDFI--SFLSAGMQLYLEGKVK------- 53 (198)
T ss_dssp EEEEECSSHHHHHHHHHHHH-------------------HCTTSEEEEEESSSSS--SBCGGGHHHHHTTSSC-------
T ss_pred EEEEECCcHHHHHHHHHHHh-------------------cCCCCeEEEEeCCCcc--cccccCcchhhccccc-------
Confidence 69999999999999998751 1222479999987654 2222222222111000
Q ss_pred ccccchhhhccccchhhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEec
Q psy4525 234 QLCGVHEASATLARPRKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPS 313 (388)
Q Consensus 234 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~ 313 (388)
.... +. ....+.+ .++||++++++.++++..++ ..+ .++. ..+++..++++
T Consensus 54 ---~~~~----~~---~~~~~~l------------~~~gi~v~~~~~V~~i~~~~-~~v-~~~~-----~~~g~~~~~~~ 104 (198)
T d1nhpa1 54 ---DVNS----VR---YMTGEKM------------ESRGVNVFSNTEITAIQPKE-HQV-TVKD-----LVSGEERVENY 104 (198)
T ss_dssp ---CGGG----SB---SCCHHHH------------HHTTCEEEETEEEEEEETTT-TEE-EEEE-----TTTCCEEEEEC
T ss_pred ---chHH----HH---HhhHHHH------------HHCCcEEEEeeceeeEeecc-ccc-eeee-----ccccccccccc
Confidence 0000 00 0000111 25799999999999998643 222 2221 12566778999
Q ss_pred ceEEEccccCCccCC----------CCCcccCCCccccCCCCCCeecchhhHHhHHH
Q psy4525 314 GIAFRSIGYQSRCVD----------SDIPFNEKSCTVIPKEGVPVVTWEGWKAIDKE 360 (388)
Q Consensus 314 D~Vi~a~G~~p~~~~----------~~l~~~~~~gi~l~~~~~~~~~~~~w~~~~~~ 360 (388)
|.+|+|+|..|+... .++.+++++++.+|+.... -..+.|...|++
T Consensus 105 D~li~a~G~~~~~~~g~~~~~~~~~~~~~~~~~G~i~vd~~~~T-~~~~IyA~GD~a 160 (198)
T d1nhpa1 105 DKLIISPGAVPFELDGVRPNTAWLKGTLELHPNGLIKTDEYMRT-SEPDVFAVGDAT 160 (198)
T ss_dssp SEEEECCCEEECCCCCEEESCGGGTTTSCBCTTSCBCCCTTCBC-SSTTEEECGGGS
T ss_pred ceeeEeecceeecccccccccccccccceeccCCceecCCcccc-cccceEEeccee
Confidence 999999998776431 2455666666777765542 233555555544
|
| >d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=98.94 E-value=1.8e-09 Score=83.37 Aligned_cols=90 Identities=13% Similarity=0.074 Sum_probs=69.2
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhC-CCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLL-PQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICL 89 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~-~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v 89 (388)
..+++++|||||++|+.+|..+.+.. .|.+|+++++.+.+. |. ..+++...+.+.+++.|+++++++.+
T Consensus 16 ~~p~~v~IiGgG~ig~E~A~~l~~~~~~g~~Vtli~~~~~il--------~~--~d~~~~~~~~~~l~~~GI~v~~~~~v 85 (117)
T d1feca2 16 EAPKRALCVGGGYISIEFAGIFNAYKARGGQVDLAYRGDMIL--------RG--FDSELRKQLTEQLRANGINVRTHENP 85 (117)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHHSCTTCEEEEEESSSSSS--------TT--SCHHHHHHHHHHHHHTTEEEEETCCE
T ss_pred ccCCeEEEECCChHHHHHHHHhHhhcccccccceeccccccc--------cc--ccchhhHHHHHHHhhCcEEEEcCCEE
Confidence 45689999999999999998776642 588999999987653 33 24567888888899999999998776
Q ss_pred EEE---------eeecccc-cccCEEEEeeC
Q psy4525 90 GQD---------ISLGDLT-NAYHAVVLTYG 110 (388)
Q Consensus 90 ~~~---------~~~~~~~-~~yd~lvlAtG 110 (388)
... +..++.. ..+|.||+|||
T Consensus 86 ~~i~~~~~g~~~v~~~~g~~i~~D~Vi~a~G 116 (117)
T d1feca2 86 AKVTKNADGTRHVVFESGAEADYDVVMLAIG 116 (117)
T ss_dssp EEEEECTTSCEEEEETTSCEEEESEEEECSC
T ss_pred EEEEECCCCEEEEEECCCCEEEcCEEEEecC
Confidence 432 3334433 37999999999
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.93 E-value=2.8e-09 Score=83.27 Aligned_cols=68 Identities=15% Similarity=0.048 Sum_probs=57.6
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
..+++++|||||+.|+.+|..+++ .|.+|+++++.+.+- |. ...++.+.+.+.+++.|++++.++.+.
T Consensus 20 ~~pk~vvIvGgG~iG~E~A~~l~~--~G~~Vtlv~~~~~~l--------~~--~d~~~~~~~~~~l~~~Gv~i~~~~~v~ 87 (125)
T d3grsa2 20 ELPGRSVIVGAGYIAVEMAGILSA--LGSKTSLMIRHDKVL--------RS--FDSMISTNCTEELENAGVEVLKFSQVK 87 (125)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSC--------TT--SCHHHHHHHHHHHHHTTCEEETTEEEE
T ss_pred hcCCEEEEEcCCccHHHHHHHHhc--CCcEEEEEeeccccc--------cc--hhhHHHHHHHHHHHHCCCEEEeCCEEE
Confidence 346899999999999999999999 899999999987652 33 245678888888899999999998874
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.91 E-value=4.9e-10 Score=92.14 Aligned_cols=74 Identities=9% Similarity=0.004 Sum_probs=48.8
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC--CCCcccCCCccccCCCCCC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD--SDIPFNEKSCTVIPKEGVP 347 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~--~~l~~~~~~gi~l~~~~~~ 347 (388)
..+++++++..++.+.. +..+ ...++.++++|.+|+|+|..|+.+. .++..+ +++.+|+....
T Consensus 64 ~~~v~~~~~~~v~~i~~--~~~~-----------~~~~~~~i~~D~li~a~G~~~~~~~~~~gl~~~--~~i~v~~~~~t 128 (167)
T d1xhca1 64 KRGIEIRLAEEAKLIDR--GRKV-----------VITEKGEVPYDTLVLATGAPNVDLARRSGIHTG--RGILIDDNFRT 128 (167)
T ss_dssp HHTEEEECSCCEEEEET--TTTE-----------EEESSCEEECSEEEECCCEECCHHHHHTTCCBS--SSEECCTTSBC
T ss_pred hccceeeeecccccccc--cccc-----------ccccccccccceeEEEEEecCCchhhhcCceeC--CceeeccccEe
Confidence 56899999988888863 2222 1234457999999999999887652 455543 56777765543
Q ss_pred eecchhhHHhHH
Q psy4525 348 VVTWEGWKAIDK 359 (388)
Q Consensus 348 ~~~~~~w~~~~~ 359 (388)
. ..+.|...|+
T Consensus 129 ~-~~~i~aiGD~ 139 (167)
T d1xhca1 129 S-AKDVYAIGDC 139 (167)
T ss_dssp S-STTEEECGGG
T ss_pred c-CCCeEEeeec
Confidence 2 3355666664
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=98.91 E-value=1.3e-10 Score=96.61 Aligned_cols=107 Identities=16% Similarity=0.108 Sum_probs=63.1
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee-eCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR-YGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~-~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.++|||||||++|+.+|..|++..+..+|+++|+.+.+..... +.............. ........++.+..+..+..
T Consensus 2 gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~ 80 (186)
T d1fcda1 2 GRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNTDYYTCYLSNEVIGGDRKLESIKH-GYDGLRAHGIQVVHDSATGI 80 (186)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCSCEECSTTHHHHHHTSSCGGGGEE-CSHHHHTTTEEEECCCEEEC
T ss_pred CCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCCccccccccccccchhhhhhhhhh-hhhhccccceeEeeeeeEee
Confidence 4799999999999999999999666689999999875432210 000000000000000 01112345666666655533
Q ss_pred E-----eeecccc-cccCEEEEeeCCCCCCCCCCCC
Q psy4525 92 D-----ISLGDLT-NAYHAVVLTYGADNDKKLNIPG 121 (388)
Q Consensus 92 ~-----~~~~~~~-~~yd~lvlAtG~~~~~~~~i~g 121 (388)
+ +...+.+ ..||+||+|||+.+. ...+++
T Consensus 81 ~~~~~~~~~~~~~~i~~D~li~atG~~~~-~~~i~~ 115 (186)
T d1fcda1 81 DPDKKLVKTAGGAEFGYDRCVVAPGIELI-YDKIEQ 115 (186)
T ss_dssp CTTTTEEEETTSCEEECSEEEECCCEEEC-CTTSTE
T ss_pred eeccceeecccceeeccceEEEEeccccc-hhhhhh
Confidence 2 3333333 389999999998763 555554
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=98.91 E-value=2.8e-10 Score=98.18 Aligned_cols=44 Identities=20% Similarity=0.321 Sum_probs=37.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGV 58 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~ 58 (388)
.++|++||||||||++||..+++ .|.+|+|+|++ .+||.+ ++++
T Consensus 4 ~~~DlvVIG~GpaGl~aA~~aa~--~G~~V~liE~~-~~GG~c~~~gc 48 (220)
T d1lvla1 4 IQTTLLIIGGGPGGYVAAIRAGQ--LGIPTVLVEGQ-ALGGTCLNIGC 48 (220)
T ss_dssp EECSEEEECCSHHHHHHHHHHHH--HTCCEEEECSS-CTTHHHHHHSH
T ss_pred cccCEEEECCCHHHHHHHHHHHH--CCCcEEEEecC-CCCCccccccc
Confidence 35899999999999999999999 89999999987 567765 3344
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=1.5e-09 Score=91.22 Aligned_cols=100 Identities=14% Similarity=0.145 Sum_probs=70.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceee----CC--CCCCcchhHHHHHHHHhhcCCCcEEEc
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY----GV--APDHPEVKNVINTFTKTGDNPRVNFYG 85 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~----g~--~p~~~~~~~~~~~~~~~~~~~~i~~~~ 85 (388)
+.+||+||||||+||+||.++++ .|.+|+|||+.+..|..... .. .|......++.+....++.+.++.+..
T Consensus 4 k~~dVvIIGGGpaGl~AA~~~ar--~g~~v~iie~~~~~g~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (190)
T d1trba1 4 KHSKLLILGSGPAGYTAAVYAAR--ANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIF 81 (190)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHT--TTCCCEEECCSSTTGGGGGCSBCCCSTTCCSSCBHHHHHHHHHHHHHHTTCEEEC
T ss_pred CCCcEEEECCCHHHHHHHHHHHH--cCCceEEEEeecccccccccchhhhhhccccccchHHHHHHHHHHHHhcCcEEec
Confidence 35799999999999999999999 89999999987553333221 11 133445777888888888888888876
Q ss_pred eEEEEEE-------eeecccccccCEEEEeeCCCC
Q psy4525 86 NICLGQD-------ISLGDLTNAYHAVVLTYGADN 113 (388)
Q Consensus 86 ~~~v~~~-------~~~~~~~~~yd~lvlAtG~~~ 113 (388)
+...... ++........+.+++|+|..+
T Consensus 82 ~~V~~~~~~~~~~~v~~~~~~~~~~~viva~G~~~ 116 (190)
T d1trba1 82 DHINKVDLQNRPFRLNGDNGEYTCDALIIATGASA 116 (190)
T ss_dssp CCEEEEECSSSSEEEEESSCEEEEEEEEECCCEEE
T ss_pred ceeEEEecCCCcEEEEEeeeeEeeeeeeeecceee
Confidence 6544322 222222336789999999754
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=98.90 E-value=6.5e-10 Score=92.82 Aligned_cols=96 Identities=18% Similarity=0.134 Sum_probs=63.8
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeC--C--CCCC--cchhHHHHHHHHhhcCCCcEEEceE
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYG--V--APDH--PEVKNVINTFTKTGDNPRVNFYGNI 87 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g--~--~p~~--~~~~~~~~~~~~~~~~~~i~~~~~~ 87 (388)
+||+||||||+|++||.++.+ .|.+|++||+. +||.+... . .|.. .....+...+..+++.++.+.....
T Consensus 2 yDViIIGgGpaGl~AAi~aar--~G~~v~iie~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (184)
T d1fl2a1 2 YDVLIVGSGPAGAAAAIYSAR--KGIRTGLMGER--FGGQILDTVDIENYISVPKTEGQKLAGALKVHVDEYDVDVIDSQ 77 (184)
T ss_dssp EEEEEECCSHHHHHHHHHHHT--TTCCEEEECSS--TTGGGGGCCEECCBTTBSSEEHHHHHHHHHHHHHTSCEEEECSC
T ss_pred CcEEEECcCHHHHHHHHHHHH--cCCeEEEEEEe--cCCcccccccceeccccchhhhHHHHHHHHHHhhheeceeeccc
Confidence 699999999999999999999 89999999975 56655211 1 1222 2345666667777777777766544
Q ss_pred EEEEEe-----------ee-cccccccCEEEEeeCCCC
Q psy4525 88 CLGQDI-----------SL-GDLTNAYHAVVLTYGADN 113 (388)
Q Consensus 88 ~v~~~~-----------~~-~~~~~~yd~lvlAtG~~~ 113 (388)
.+.... .. .......+.+++++|...
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 115 (184)
T d1fl2a1 78 SASKLIPAAVEGGLHQIETASGAVLKARSIIVATGAKL 115 (184)
T ss_dssp CEEEEECCSSTTCCEEEEETTSCEEEEEEEEECCCEEE
T ss_pred eeeeecccccccceeeeeeecceeeecccccccccccc
Confidence 432211 11 111225678999999643
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.89 E-value=3.4e-09 Score=82.32 Aligned_cols=87 Identities=11% Similarity=0.163 Sum_probs=66.0
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
..+++++|||||+.|+.+|..+++ .|.+|++++++..+ |. ..+++.+.+.+.+++.|++|+.++.+.
T Consensus 18 ~~P~~vvIIGgG~iG~E~A~~l~~--lG~~Vtii~~~~~l---------~~--~D~~~~~~l~~~l~~~Gv~i~~~~~v~ 84 (122)
T d1h6va2 18 YCPGKTLVVGASYVALECAGFLAG--IGLDVTVMVRSILL---------RG--FDQDMANKIGEHMEEHGIKFIRQFVPT 84 (122)
T ss_dssp SCCCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSS---------TT--SCHHHHHHHHHHHHHTTEEEEESCEEE
T ss_pred cCCCeEEEECCCccHHHHHHHHhh--cCCeEEEEEechhh---------cc--CCHHHHHHHHHHHHHCCCEEEECCEEE
Confidence 456899999999999999999999 89999999975321 32 345678888888999999999887653
Q ss_pred EE------------eeecc--c----ccccCEEEEeeC
Q psy4525 91 QD------------ISLGD--L----TNAYHAVVLTYG 110 (388)
Q Consensus 91 ~~------------~~~~~--~----~~~yd~lvlAtG 110 (388)
.. ++... . ...||.|++|+|
T Consensus 85 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~D~vl~AiG 122 (122)
T d1h6va2 85 KIEQIEAGTPGRLKVTAKSTNSEETIEDEFNTVLLAVG 122 (122)
T ss_dssp EEEEEECSTTCEEEEEEECTTSCEEEEEEESEEECCCC
T ss_pred EEEEecCCCccEEEEEEEECCCCcEEEEECCEEEEEeC
Confidence 21 11111 1 125899999998
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=98.89 E-value=4e-09 Score=81.27 Aligned_cols=86 Identities=17% Similarity=0.122 Sum_probs=67.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
.+++|+|||||+.|+.+|..|.+ .|.+|+++++.+.+. |.+ ..++.+.+.+.+++.|+++++++.+..
T Consensus 21 ~p~~v~IiGgG~iG~E~A~~l~~--~g~~Vtlv~~~~~il--------~~~--d~~~~~~~~~~l~~~gV~i~~~~~v~~ 88 (117)
T d1onfa2 21 ESKKIGIVGSGYIAVELINVIKR--LGIDSYIFARGNRIL--------RKF--DESVINVLENDMKKNNINIVTFADVVE 88 (117)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHT--TTCEEEEECSSSSSC--------TTS--CHHHHHHHHHHHHHTTCEEECSCCEEE
T ss_pred CCCEEEEECCchHHHHHHHHHHh--ccccceeeehhcccc--------ccc--cHHHHHHHHHHHHhCCCEEEECCEEEE
Confidence 36899999999999999999999 899999999987652 332 456788888888889999998876642
Q ss_pred E---------eeeccccc--ccCEEEEee
Q psy4525 92 D---------ISLGDLTN--AYHAVVLTY 109 (388)
Q Consensus 92 ~---------~~~~~~~~--~yd~lvlAt 109 (388)
. ++..+++. .||.||+|.
T Consensus 89 i~~~~~~~~~v~~~~G~~~~~~D~Vi~AI 117 (117)
T d1onfa2 89 IKKVSDKNLSIHLSDGRIYEHFDHVIYCV 117 (117)
T ss_dssp EEESSTTCEEEEETTSCEEEEESEEEECC
T ss_pred EEEcCCCeEEEEECCCCEEEeCCEEEEeC
Confidence 1 33344432 589999873
|
| >d1xhca1 c.3.1.5 (A:1-103,A:226-289) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.88 E-value=1.1e-10 Score=96.19 Aligned_cols=151 Identities=20% Similarity=0.161 Sum_probs=80.8
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce---eeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV---RYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~---~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
+|+|||||++|+.+|..|++ +.+|+|+++.+.+...- ..-. ........+.....+.+.+.+++++.++.+..
T Consensus 2 rVvIIGgG~~G~e~A~~l~~---~~~Vtvv~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~ 77 (167)
T d1xhca1 2 KVVIVGNGPGGFELAKQLSQ---TYEVTVIDKEPVPYYSKPMLSHYI-AGFIPRNRLFPYSLDWYRKRGIEIRLAEEAKL 77 (167)
T ss_dssp EEEEECCSHHHHHHHHHHTT---TSEEEEECSSSSCCCCSTTHHHHH-TTSSCGGGGCSSCHHHHHHHTEEEECSCCEEE
T ss_pred eEEEECCcHHHHHHHHHHHc---CCCEEEEeccccccccccchhhhh-hhhhhhhhhhHHHHHHHHhccceeeeeccccc
Confidence 79999999999999999976 67999999886543110 0000 01111111222223344456788887765532
Q ss_pred E------eeecccccccCEEEEeeCCCCCCCCCCCCCCCCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHH
Q psy4525 92 D------ISLGDLTNAYHAVVLTYGADNDKKLNIPGEDGKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAM 165 (388)
Q Consensus 92 ~------~~~~~~~~~yd~lvlAtG~~~~~~~~i~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~ 165 (388)
. +..++.+..||.+|+|+|..+...+.-.|....+-+...++... ..++..... +....+..++|++..|+
T Consensus 78 i~~~~~~~~~~~~~i~~D~li~a~G~~~~~~~~~~gl~~~~~i~v~~~~~t--~~~~i~aiG-D~~~~~~~~~~~~~~a~ 154 (167)
T d1xhca1 78 IDRGRKVVITEKGEVPYDTLVLATGAPNVDLARRSGIHTGRGILIDDNFRT--SAKDVYAIG-DCAEYSGIIAGTAKAAM 154 (167)
T ss_dssp EETTTTEEEESSCEEECSEEEECCCEECCHHHHHTTCCBSSSEECCTTSBC--SSTTEEECG-GGEEBTTBCCCSHHHHH
T ss_pred cccccccccccccccccceeEEEEEecCCchhhhcCceeCCceeeccccEe--cCCCeEEee-ecccCCCeEEChHHHHH
Confidence 1 22333344899999999976531111123322221222222211 112211110 00112234778999999
Q ss_pred HHHHHhc
Q psy4525 166 DVARILL 172 (388)
Q Consensus 166 e~a~~L~ 172 (388)
+.|..++
T Consensus 155 ~~a~~~a 161 (167)
T d1xhca1 155 EQARVLA 161 (167)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988776
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.84 E-value=9.8e-09 Score=79.80 Aligned_cols=86 Identities=17% Similarity=0.186 Sum_probs=65.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
..++|+|||||+.|+.+|..|++ .|.+|+++|+.+.+. |.. ...++...+.+.+++.|++++.++.+..
T Consensus 29 ~~k~vvViGgG~iG~E~A~~l~~--~g~~Vtlie~~~~~l--------~~~-~d~~~~~~~~~~l~~~gv~~~~~~~v~~ 97 (123)
T d1nhpa2 29 EVNNVVVIGSGYIGIEAAEAFAK--AGKKVTVIDILDRPL--------GVY-LDKEFTDVLTEEMEANNITIATGETVER 97 (123)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSTT--------TTT-CCHHHHHHHHHHHHTTTEEEEESCCEEE
T ss_pred CCCEEEEECChHHHHHHHHHhhc--cceEEEEEEecCccc--------ccc-cchhhHHHHHHHhhcCCeEEEeCceEEE
Confidence 46899999999999999999999 899999999987652 221 3456777888889999999999887643
Q ss_pred E--------eeecccccccCEEEEe
Q psy4525 92 D--------ISLGDLTNAYHAVVLT 108 (388)
Q Consensus 92 ~--------~~~~~~~~~yd~lvlA 108 (388)
. +..+..+..+|.||+|
T Consensus 98 i~~~~~~~~v~~dg~~i~~D~vi~a 122 (123)
T d1nhpa2 98 YEGDGRVQKVVTDKNAYDADLVVVA 122 (123)
T ss_dssp EECSSBCCEEEESSCEEECSEEEEC
T ss_pred EEcCCCEEEEEeCCCEEECCEEEEE
Confidence 2 1112222367888876
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=98.84 E-value=1.1e-08 Score=87.68 Aligned_cols=99 Identities=15% Similarity=0.035 Sum_probs=62.7
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC-CCCCce-ee--CCC----------CCCcchhHHHHHHHHhh-c
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP-VPFGLV-RY--GVA----------PDHPEVKNVINTFTKTG-D 77 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~-~~gg~~-~~--g~~----------p~~~~~~~~~~~~~~~~-~ 77 (388)
.|||+||||||||++||.++++ .|.++.||+.+. .+|.+. +. +.. +..+....+...+.+.+ .
T Consensus 2 ~YDVIVIGgG~AG~eAA~~aAR--~G~ktllit~~~~~ig~~~cnp~~gg~~kg~l~reid~kG~av~a~raQ~k~~l~~ 79 (230)
T d2cula1 2 AYQVLIVGAGFSGAETAFWLAQ--KGVRVGLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLEG 79 (230)
T ss_dssp CCSEEEECCSHHHHHHHHHHHH--TTCCEEEEESCGGGTTCCSSCCCSCCCTTCHHHHHCCTTCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEECcCHHHHHHHHHHHH--CCCcEEEEEeccchhcccccCCccccCCCcceeeeeeccchhhhhHHHHHHHHHhh
Confidence 4899999999999999999999 999999999763 233322 11 110 11112233444444444 3
Q ss_pred CCCcEEEceEEEEEE--------eeecccc-cccCEEEEeeCCCC
Q psy4525 78 NPRVNFYGNICLGQD--------ISLGDLT-NAYHAVVLTYGADN 113 (388)
Q Consensus 78 ~~~i~~~~~~~v~~~--------~~~~~~~-~~yd~lvlAtG~~~ 113 (388)
..+++++..+.+... +.+.++. ...+.||||||..-
T Consensus 80 ~~nL~i~q~~V~dli~e~~~v~gV~t~~G~~~~AkaVILtTGTFL 124 (230)
T d2cula1 80 LRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFL 124 (230)
T ss_dssp CTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCS
T ss_pred hcCHHHHhccceeeEecccceeeEEeccccEEEEeEEEEccCcce
Confidence 457888766554321 3333333 36889999999654
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=98.83 E-value=6.7e-09 Score=80.92 Aligned_cols=88 Identities=16% Similarity=0.238 Sum_probs=69.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
..+++++|||||+.|+.+|..+++ .|.+|+++++.+.+. |. ...++.+.+.+.+++.|++++.++.+.
T Consensus 24 ~~p~~vvIiGgG~IG~E~A~~~~~--~G~~Vtive~~~~il--------~~--~d~~~~~~l~~~l~~~gv~~~~~~~v~ 91 (125)
T d1ojta2 24 EVPGKLLIIGGGIIGLEMGTVYST--LGSRLDVVEMMDGLM--------QG--ADRDLVKVWQKQNEYRFDNIMVNTKTV 91 (125)
T ss_dssp CCCSEEEEESCSHHHHHHHHHHHH--HTCEEEEECSSSSSS--------TT--SCHHHHHHHHHHHGGGEEEEECSCEEE
T ss_pred ccCCeEEEECCCHHHHHHHHHhhc--CCCEEEEEEeecccc--------cc--chhhHHHHHHHHHHHcCcccccCcEEE
Confidence 456899999999999999999999 899999999987653 43 355778888888999999999888764
Q ss_pred EE--------eee--ccc---ccccCEEEEeeC
Q psy4525 91 QD--------ISL--GDL---TNAYHAVVLTYG 110 (388)
Q Consensus 91 ~~--------~~~--~~~---~~~yd~lvlAtG 110 (388)
.. +.. .+. ...+|.|++|+|
T Consensus 92 ~v~~~~~g~~v~~~~~~g~~~~i~~D~vl~A~G 124 (125)
T d1ojta2 92 AVEPKEDGVYVTFEGANAPKEPQRYDAVLVAAG 124 (125)
T ss_dssp EEEEETTEEEEEEESSSCCSSCEEESCEEECCC
T ss_pred EEEEcCCcEEEEEEeCCCCeEEEEcCEEEEecC
Confidence 21 222 111 237999999999
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.83 E-value=2.9e-09 Score=94.17 Aligned_cols=47 Identities=15% Similarity=0.191 Sum_probs=41.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVA 59 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~ 59 (388)
...+|++||||||+|+.+|..+++ .|.+|+++|+.+.+||.+ ++||.
T Consensus 40 ~k~yDvvVIGgG~aG~~aA~~~a~--~G~kv~vve~~~~lGG~c~n~Gcv 87 (261)
T d1mo9a1 40 PREYDAIFIGGGAAGRFGSAYLRA--MGGRQLIVDRWPFLGGSCPHNACV 87 (261)
T ss_dssp CSCBSEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSSCHHHHHSHH
T ss_pred CccCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCcccccccccccc
Confidence 456899999999999999999999 899999999999999876 44543
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.82 E-value=1.3e-08 Score=78.90 Aligned_cols=68 Identities=16% Similarity=0.106 Sum_probs=58.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
..+++++|||||+.|+.+|..|.+ .|.+|+++++.+.+. |. ...++...+.+.+++.|+++++++.+.
T Consensus 21 ~~p~~~vIiG~G~ig~E~A~~l~~--lG~~Vtii~~~~~~l--------~~--~d~ei~~~l~~~l~~~GV~i~~~~~v~ 88 (122)
T d1v59a2 21 EIPKRLTIIGGGIIGLEMGSVYSR--LGSKVTVVEFQPQIG--------AS--MDGEVAKATQKFLKKQGLDFKLSTKVI 88 (122)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSSS--------SS--SCHHHHHHHHHHHHHTTCEEECSEEEE
T ss_pred cCCCeEEEECCCchHHHHHHHHHh--hCcceeEEEeccccc--------hh--hhhhhHHHHHHHHHhccceEEeCCEEE
Confidence 456899999999999999999999 899999999987753 43 245678888888888999999998874
|
| >d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=8.5e-09 Score=81.80 Aligned_cols=90 Identities=16% Similarity=0.004 Sum_probs=68.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhh--CCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKL--LPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICL 89 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~--~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v 89 (388)
..++++|||||++|+.+|..|.+. ..|.+|+++++.+.+. +. ....++.+.+.+.+++.|++++.++.+
T Consensus 36 ~~k~i~IvGgG~~G~E~A~~l~~~~~~~g~~Vt~i~~~~~~l--------~~-~~~~~~~~~~~~~l~~~GV~~~~~~~V 106 (137)
T d1m6ia2 36 EVKSITIIGGGFLGSELACALGRKARALGTEVIQLFPEKGNM--------GK-ILPEYLSNWTMEKVRREGVKVMPNAIV 106 (137)
T ss_dssp HCSEEEEECCSHHHHHHHHHHHHHHHHHTCEEEEECSSSSTT--------TT-TSCHHHHHHHHHHHHTTTCEEECSCCE
T ss_pred cCCEEEEECCCHHHHHHHHHHHHHHHhcCCEEEEecccccCC--------cc-cCCHHHHHHHHHHHHhCCcEEEeCCEE
Confidence 357999999999999999988642 1589999999987653 11 124557777888899999999998766
Q ss_pred EE--------Eeeeccccc-ccCEEEEeeC
Q psy4525 90 GQ--------DISLGDLTN-AYHAVVLTYG 110 (388)
Q Consensus 90 ~~--------~~~~~~~~~-~yd~lvlAtG 110 (388)
.. .+++++++. .+|.||+|+|
T Consensus 107 ~~i~~~~~~~~v~l~~G~~i~aD~Vi~A~G 136 (137)
T d1m6ia2 107 QSVGVSSGKLLIKLKDGRKVETDHIVAAVG 136 (137)
T ss_dssp EEEEEETTEEEEEETTSCEEEESEEEECCC
T ss_pred EEEEecCCEEEEEECCCCEEECCEEEEeec
Confidence 32 245555543 8999999998
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.81 E-value=1.4e-08 Score=78.18 Aligned_cols=68 Identities=15% Similarity=0.121 Sum_probs=57.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
..+++++|||||+.|+.+|..+.+ .|.+|+++|+.+.+. |. ...++.+.+.+.+++.|+++++++.+.
T Consensus 20 ~~p~~v~IiGgG~ig~E~A~~l~~--~G~~Vtlve~~~~il--------~~--~d~~~~~~l~~~l~~~GI~i~~~~~v~ 87 (117)
T d1ebda2 20 EVPKSLVVIGGGYIGIELGTAYAN--FGTKVTILEGAGEIL--------SG--FEKQMAAIIKKRLKKKGVEVVTNALAK 87 (117)
T ss_dssp SCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSSSSS--------TT--SCHHHHHHHHHHHHHTTCEEEESEEEE
T ss_pred hcCCeEEEECCCccceeeeeeecc--cccEEEEEEecceec--------cc--ccchhHHHHHHHHHhcCCEEEcCCEEE
Confidence 456899999999999999999999 899999999998753 32 234677888888888999999998874
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=98.80 E-value=1.1e-08 Score=79.27 Aligned_cols=87 Identities=7% Similarity=-0.084 Sum_probs=66.7
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLGQ 91 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~~ 91 (388)
+.++|+|||||+.|+.+|..|++ .+.+|+++++.+.+. |. ...++...+.+.+++.+++++.++.+..
T Consensus 21 ~~~~vvVvGgG~ig~E~A~~l~~--~g~~vt~i~~~~~~l--------~~--~d~~~~~~~~~~l~~~gI~v~~~~~v~~ 88 (121)
T d1mo9a2 21 PGSTVVVVGGSKTAVEYGCFFNA--TGRRTVMLVRTEPLK--------LI--KDNETRAYVLDRMKEQGMEIISGSNVTR 88 (121)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCTTT--------TC--CSHHHHHHHHHHHHHTTCEEESSCEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHh--cchhheEeeccchhh--------cc--cccchhhhhhhhhhccccEEEcCCEEEE
Confidence 45899999999999999999999 899999999987643 32 2345677778888889999999887642
Q ss_pred Eee-------------ecccc-cccCEEEEeeC
Q psy4525 92 DIS-------------LGDLT-NAYHAVVLTYG 110 (388)
Q Consensus 92 ~~~-------------~~~~~-~~yd~lvlAtG 110 (388)
... ..+.+ ..+|.||+|+|
T Consensus 89 i~~~~~~~~~~~~~~~~~~~~~i~~D~Vi~a~G 121 (121)
T d1mo9a2 89 IEEDANGRVQAVVAMTPNGEMRIETDFVFLGLG 121 (121)
T ss_dssp EEECTTSBEEEEEEEETTEEEEEECSCEEECCC
T ss_pred EEecCCceEEEEEEEeCCCCEEEEcCEEEEEEC
Confidence 211 11112 37899999998
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.80 E-value=4.4e-09 Score=88.53 Aligned_cols=97 Identities=22% Similarity=0.278 Sum_probs=69.3
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC----CCcee--------eCCCCCCcchhHHHHHHHHhhcCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP----FGLVR--------YGVAPDHPEVKNVINTFTKTGDNPR 80 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~----gg~~~--------~g~~p~~~~~~~~~~~~~~~~~~~~ 80 (388)
.+||+||||||||++||.++++ .|.+++++|+.... ++.+. .+. |......++...+.+++.+++
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~ar--~g~~v~vie~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~el~~~~~~q~~~~g 81 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAAR--AELKPLLFEGWMANDIAPGGQLTTTTDVENFPGF-PEGILGVELTDKFRKQSERFG 81 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHHH--TTCCCEEECCSSBTTBCTTCGGGGCSEECCSTTC-TTCEEHHHHHHHHHHHHHHTT
T ss_pred cceEEEECCCHHHHHHHHHHHH--cCCcEEEEEeecccccccccccccchhhhccccc-cccccchHHHHHHHHHHHhhc
Confidence 4799999999999999999999 89999999976542 33321 122 334457888888888888899
Q ss_pred cEEEceEEEEEE-------eeecccccccCEEEEeeCCC
Q psy4525 81 VNFYGNICLGQD-------ISLGDLTNAYHAVVLTYGAD 112 (388)
Q Consensus 81 i~~~~~~~v~~~-------~~~~~~~~~yd~lvlAtG~~ 112 (388)
+++..+.....+ +.........|.+++++|..
T Consensus 82 ~~i~~~~V~~~~~~~~~~~v~~~~~~~~~~~~~~a~g~~ 120 (192)
T d1vdca1 82 TTIFTETVTKVDFSSKPFKLFTDSKAILADAVILAIGAV 120 (192)
T ss_dssp CEEECCCCCEEECSSSSEEEECSSEEEEEEEEEECCCEE
T ss_pred ceeeeeeEEecccccCcEEecccceeeeeeeEEEEeeee
Confidence 988766432222 22222233678999999953
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=98.79 E-value=3.9e-09 Score=93.70 Aligned_cols=37 Identities=16% Similarity=0.253 Sum_probs=33.4
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
++.+||+|||||++|+++|.+|++ .|.+|+|+|+...
T Consensus 2 ~~~~DvvIIGaGi~Gls~A~~La~--~G~~V~vlE~~~~ 38 (276)
T d1ryia1 2 KRHYEAVVIGGGIIGSAIAYYLAK--ENKNTALFESGTM 38 (276)
T ss_dssp CSEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSST
T ss_pred CccCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCC
Confidence 345799999999999999999999 8999999999753
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=98.76 E-value=1e-08 Score=88.56 Aligned_cols=65 Identities=14% Similarity=0.245 Sum_probs=46.6
Q ss_pred CCCCCCCCC-CC-CeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhh
Q psy4525 115 KKLNIPGED-GK-NIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLS 192 (388)
Q Consensus 115 ~~~~i~g~~-~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~ 192 (388)
+.|.+||.+ .+ .++|+.+|... ...+++|+|+|||+|.||+|+|.+++
T Consensus 3 ~iP~~pG~e~F~G~v~HS~~~~~~----------~~~~~gK~V~VvG~G~Sa~dia~~~~-------------------- 52 (235)
T d1w4xa2 3 QLPNFPGLKDFAGNLYHTGNWPHE----------PVDFSGQRVGVIGTGSSGIQVSPQIA-------------------- 52 (235)
T ss_dssp CCCCCTTGGGCCSEEEEGGGCCSS----------CCCCBTCEEEEECCSHHHHHHHHHHH--------------------
T ss_pred CCCCCCChhhCCCcEEecCcCCCC----------CCCCCCCEEEEECCCccHHHHHHHHH--------------------
Confidence 577889865 33 46777766311 23467999999999999999999887
Q ss_pred cCCCcEEEEEeecCcccc
Q psy4525 193 TSRIKSVNLVGRRGALQV 210 (388)
Q Consensus 193 ~~~~~~V~~i~r~~~~~~ 210 (388)
..+.+++++.|++.+..
T Consensus 53 -~~~~~~~~~~~~~~~~~ 69 (235)
T d1w4xa2 53 -KQAAELFVFQRTPHFAV 69 (235)
T ss_dssp -HHBSEEEEEESSCCCEE
T ss_pred -hhhccccccccccceee
Confidence 22346888887776644
|
| >d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=98.71 E-value=3.8e-08 Score=75.67 Aligned_cols=88 Identities=10% Similarity=0.041 Sum_probs=66.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhC-CCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLL-PQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICL 89 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~-~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v 89 (388)
..+++++|||||+.|+.+|..+.+.. .+.+|+++++.+.+- |. ...++.+.+.+.+++.|+++++++.+
T Consensus 18 ~~p~~v~ivGgG~ig~E~A~~l~~l~~~~~~Vtli~~~~~iL--------~~--~d~~~~~~l~~~l~~~GV~v~~~~~v 87 (117)
T d1aoga2 18 EPPRRVLTVGGGFISVEFAGIFNAYKPKDGQVTLCYRGEMIL--------RG--FDHTLREELTKQLTANGIQILTKENP 87 (117)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHHCCTTCEEEEEESSSSSS--------TT--SCHHHHHHHHHHHHHTTCEEEESCCE
T ss_pred hcCCeEEEECCcHHHHHHHHHhhhcccCCcEEEEEeccchhh--------cc--cchHHHHHHHHHHHhcCcEEEcCCEE
Confidence 45689999999999999998777642 467899999987642 33 24567788888899999999988766
Q ss_pred EEE---------eeecccc-cccCEEEEe
Q psy4525 90 GQD---------ISLGDLT-NAYHAVVLT 108 (388)
Q Consensus 90 ~~~---------~~~~~~~-~~yd~lvlA 108 (388)
... ++.++++ ..+|.||+|
T Consensus 88 ~~ie~~~~~~~~v~~~~G~~i~~D~Vi~A 116 (117)
T d1aoga2 88 AKVELNADGSKSVTFESGKKMDFDLVMMA 116 (117)
T ss_dssp EEEEECTTSCEEEEETTSCEEEESEEEEC
T ss_pred EEEEEcCCCeEEEEECCCcEEEeCEEEEe
Confidence 321 3444444 378999887
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.68 E-value=1.8e-09 Score=93.40 Aligned_cols=70 Identities=19% Similarity=0.278 Sum_probs=51.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCCCCcc--hhHHHHHHHHhhcCCCcEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAPDHPE--VKNVINTFTKTGDNPRVNF 83 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p~~~~--~~~~~~~~~~~~~~~~i~~ 83 (388)
+++||+||||||||++||.++++ .|.+|+|||+.+.+||.+ ..++.|.... ..+....+.+.+..+|+++
T Consensus 4 ~~yDviVIG~GpAGl~aA~~aa~--~G~kV~lie~~~~~GG~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~Gi~~ 76 (233)
T d1v59a1 4 KSHDVVIIGGGPAGYVAAIKAAQ--LGFNTACVEKRGKLGGTCLNVGCIPSKALLNNSHLFHQMHTEAQKRGIDV 76 (233)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHTSGGGTEEE
T ss_pred cccCEEEECCCHHHHHHHHHHHH--CCCcEEEEEecCCcceEeEEeeccccccccccchhHHHhhhhHhhcCeeE
Confidence 45899999999999999999999 899999999998999988 4466554322 2233334444555666543
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=98.68 E-value=1.9e-08 Score=89.49 Aligned_cols=37 Identities=22% Similarity=0.346 Sum_probs=33.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
+.+||+|||||.+|+++|.+|++ .|.+|+|+|+.+..
T Consensus 2 ~~yDvvIIGaGi~Gls~A~~La~--~G~~V~viE~~~~~ 38 (281)
T d2gf3a1 2 THFDVIVVGAGSMGMAAGYQLAK--QGVKTLLVDAFDPP 38 (281)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSCSS
T ss_pred CcCCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCC
Confidence 46899999999999999999999 89999999997544
|
| >d1nhpa1 c.3.1.5 (A:1-119,A:243-321) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=98.68 E-value=3.1e-09 Score=89.87 Aligned_cols=98 Identities=19% Similarity=0.325 Sum_probs=63.7
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCC-----CcchhHHHHHHHHhhcCCCcEEEceEE
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPD-----HPEVKNVINTFTKTGDNPRVNFYGNIC 88 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~ 88 (388)
.+|+|||||++|+.+|..|++..++.+|+++++.+.+. .+..+. |. ......+.....+.+++.|++++.++.
T Consensus 1 ~KVvIIGgG~~G~e~A~~l~~~~~~~~V~v~~~~~~~~-~~~~~~-~~~l~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~ 78 (198)
T d1nhpa1 1 MKVIVLGSSHGGYEAVEELLNLHPDAEIQWYEKGDFIS-FLSAGM-QLYLEGKVKDVNSVRYMTGEKMESRGVNVFSNTE 78 (198)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHCTTSEEEEEESSSSSS-BCGGGH-HHHHTTSSCCGGGSBSCCHHHHHHTTCEEEETEE
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCCeEEEEeCCCccc-ccccCc-chhhcccccchHHHHHhhHHHHHHCCcEEEEeec
Confidence 37999999999999999999977788999999886652 111111 10 011122222223445567999998887
Q ss_pred EEE------Eeeec---cc---ccccCEEEEeeCCCC
Q psy4525 89 LGQ------DISLG---DL---TNAYHAVVLTYGADN 113 (388)
Q Consensus 89 v~~------~~~~~---~~---~~~yd~lvlAtG~~~ 113 (388)
+.. .++.. .. ...||.+|+|+|+.+
T Consensus 79 V~~i~~~~~~v~~~~~~~g~~~~~~~D~li~a~G~~~ 115 (198)
T d1nhpa1 79 ITAIQPKEHQVTVKDLVSGEERVENYDKLIISPGAVP 115 (198)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEECSEEEECCCEEE
T ss_pred eeeEeeccccceeeecccccccccccceeeEeeccee
Confidence 642 12221 11 237999999999765
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.68 E-value=2.7e-09 Score=91.46 Aligned_cols=109 Identities=17% Similarity=0.162 Sum_probs=66.9
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC-C--ceeeCC----CCC------------------Ccch
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF-G--LVRYGV----APD------------------HPEV 65 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g-g--~~~~g~----~p~------------------~~~~ 65 (388)
+..+++||||||++|+.+|..|++..+..+|++|++++.+- - .+.+.. .+. ....
T Consensus 2 p~~~~~vIvG~G~aG~~~A~~Lr~~~~~~~I~li~~e~~~py~r~~Ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (213)
T d1m6ia1 2 PSHVPFLLIGGGTAAFAAARSIRARDPGARVLIVSEDPELPYMRPPLSKELWFSDDPNVTKTLRFKQWNGKERSIYFQPP 81 (213)
T ss_dssp CSEEEEEEESCSHHHHHHHHHHHHHSTTCEEEEEESSSSCCBCSGGGGTGGGCC--CTHHHHCEEECTTSCEEESBSSCG
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCCCcEEEEeCCCCCCccccccceecccccCchhhhhhhhhhcccchhhhhcCCh
Confidence 34578999999999999999999865667899999875531 0 000000 000 0000
Q ss_pred hH-HHHHHHHhhcCCCcEEEceEEEEE------Eeeeccccc-ccCEEEEeeCCCCCCCCCCC
Q psy4525 66 KN-VINTFTKTGDNPRVNFYGNICLGQ------DISLGDLTN-AYHAVVLTYGADNDKKLNIP 120 (388)
Q Consensus 66 ~~-~~~~~~~~~~~~~i~~~~~~~v~~------~~~~~~~~~-~yd~lvlAtG~~~~~~~~i~ 120 (388)
+. ........+++.+++++.++.|.. .+++.+++. .||.||+|||+.++ .+.++
T Consensus 82 ~~~~~~~~~~~~~~~gI~~~~g~~V~~id~~~~~V~l~dG~~i~~d~lViAtG~~~~-~~~l~ 143 (213)
T d1m6ia1 82 SFYVSAQDLPHIENGGVAVLTGKKVVQLDVRDNMVKLNDGSQITYEKCLIATGGTEP-NVELA 143 (213)
T ss_dssp GGSBCTTTTTTSTTCEEEEEETCCEEEEEGGGTEEEETTSCEEEEEEEEECCCEEEE-CCTTH
T ss_pred hhhhhhhhHHHHHHCCeEEEeCCEEEEeeccCceeeeccceeeccceEEEeeeeecc-hhhhh
Confidence 00 011112345667899998876642 356665544 89999999998764 44443
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=98.67 E-value=3.9e-08 Score=88.68 Aligned_cols=41 Identities=37% Similarity=0.421 Sum_probs=36.8
Q ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 10 SQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 10 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
+...+||+|||+|++|+++|..|++ .|.+|+|+|+.+..||
T Consensus 13 p~e~~DVlVIG~G~aGl~aA~~la~--~G~~V~lvEK~~~~gG 53 (308)
T d1y0pa2 13 PHDTVDVVVVGSGGAGFSAAISATD--SGAKVILIEKEPVIGG 53 (308)
T ss_dssp CSEECSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCT
T ss_pred CCCcCCEEEECcCHHHHHHHHHHHH--CCCcEEEEecCCCCCC
Confidence 3456899999999999999999999 8999999999887665
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=98.64 E-value=2e-08 Score=75.95 Aligned_cols=59 Identities=22% Similarity=0.199 Sum_probs=42.7
Q ss_pred CCCCCCC------CCCeeecccccccccCCCCccccCcCCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHh
Q psy4525 117 LNIPGED------GKNIISARSFVGWYNGLPEDASLDLSLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEK 190 (388)
Q Consensus 117 ~~i~g~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~ 190 (388)
|.+||++ ...++|+..|.. ...+++|+|+|||+|+||+|+|.+|+
T Consensus 2 P~ipGl~~f~~~~~G~i~Hs~~y~~-----------~~~f~gK~VlVVG~g~Sa~dia~~l~------------------ 52 (107)
T d2gv8a2 2 PNIKGLDEYAKAVPGSVLHSSLFRE-----------PELFVGESVLVVGGASSANDLVRHLT------------------ 52 (107)
T ss_dssp CCCBTHHHHHHHSTTSEEEGGGCCC-----------GGGGTTCCEEEECSSHHHHHHHHHHT------------------
T ss_pred cCCCChHHHhccCCccEEECCcCcc-----------hhhcCCCeEEEECCCCCHHHHHHHHH------------------
Confidence 4577743 124666666552 34567999999999999999999997
Q ss_pred hhcCCCcEEEEEeecCc
Q psy4525 191 LSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 191 ~~~~~~~~V~~i~r~~~ 207 (388)
..+++++++.|++.
T Consensus 53 ---~~ak~v~~~~~r~~ 66 (107)
T d2gv8a2 53 ---PVAKHPIYQSLLGG 66 (107)
T ss_dssp ---TTSCSSEEEECTTC
T ss_pred ---HhcCEEEEEEecCc
Confidence 44567787777754
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=98.63 E-value=3.5e-08 Score=86.62 Aligned_cols=38 Identities=26% Similarity=0.505 Sum_probs=34.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
+...+|+||||||+|+++|..|++ .|++|+|||+.+.+
T Consensus 2 ~~~~kV~IiGaG~aGl~~A~~L~~--~G~~v~v~Er~~~~ 39 (265)
T d2voua1 2 PTTDRIAVVGGSISGLTAALMLRD--AGVDVDVYERSPQP 39 (265)
T ss_dssp CCCSEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSSSS
T ss_pred CCCCcEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCCC
Confidence 456899999999999999999999 89999999997654
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=6.2e-09 Score=89.32 Aligned_cols=39 Identities=15% Similarity=0.221 Sum_probs=34.7
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
.||++||||||||++||.++++ .|.+|+|+|+. .+||.+
T Consensus 3 ~yDviIIG~GpaG~~aA~~aar--~G~kV~vIEk~-~~GG~c 41 (221)
T d3grsa1 3 SYDYLVIGGGSGGLASARRAAE--LGARAAVVESH-KLGGTC 41 (221)
T ss_dssp ECSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-CTTHHH
T ss_pred ccCEEEECCCHHHHHHHHHHHH--CCCEEEEEecc-CCCCcc
Confidence 4899999999999999999999 89999999986 456554
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=98.62 E-value=2.1e-08 Score=82.83 Aligned_cols=48 Identities=13% Similarity=0.187 Sum_probs=35.3
Q ss_pred CCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHH
Q psy4525 151 DCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEF 217 (388)
Q Consensus 151 ~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el 217 (388)
.+|||+|||||++|+|+|..|.+ ...-.+||++++.+.+......+..
T Consensus 1 ~gkrivIvGgG~~G~e~A~~l~~-------------------~~~~~~Vtlie~~~~~~~~~~~~~~ 48 (186)
T d1fcda1 1 AGRKVVVVGGGTGGATAAKYIKL-------------------ADPSIEVTLIEPNTDYYTCYLSNEV 48 (186)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH-------------------HCTTSEEEEECSCSCEECSTTHHHH
T ss_pred CCCcEEEECccHHHHHHHHHHHH-------------------cCCCCcEEEEECCCccccccccccc
Confidence 37999999999999999998851 1112379999998876655444443
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=98.61 E-value=4.9e-08 Score=75.69 Aligned_cols=68 Identities=13% Similarity=0.173 Sum_probs=57.8
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
..+++++|||||+.|+.+|..+.+ .|.+|+++++.+.+. |. ...++...+.+.+++.|++++.++.+.
T Consensus 23 ~~p~~~viiG~G~iglE~A~~~~~--~G~~Vtvi~~~~~~l--------~~--~d~~~~~~l~~~l~~~GI~i~~~~~v~ 90 (123)
T d1dxla2 23 EIPKKLVVIGAGYIGLEMGSVWGR--IGSEVTVVEFASEIV--------PT--MDAEIRKQFQRSLEKQGMKFKLKTKVV 90 (123)
T ss_dssp SCCSEEEESCCSHHHHHHHHHHHH--HTCEEEEECSSSSSS--------TT--SCHHHHHHHHHHHHHSSCCEECSEEEE
T ss_pred ccCCeEEEEccchHHHHHHHHHHh--cCCeEEEEEEccccC--------ch--hhhcchhhhhhhhhcccceEEcCCceE
Confidence 457899999999999999999999 899999999987652 32 245678888888999999999998874
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=98.60 E-value=8.2e-08 Score=85.35 Aligned_cols=44 Identities=34% Similarity=0.440 Sum_probs=38.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceee
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRY 56 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~ 56 (388)
..+||+|||||||||+||..|++. .|++|+|||+.+.+||.+.+
T Consensus 32 ~e~DViVIGaGpaGL~aA~~LA~~-~G~~V~vlE~~~~~GG~~~~ 75 (278)
T d1rp0a1 32 AETDVVVVGAGSAGLSAAYEISKN-PNVQVAIIEQSVSPGGGAWL 75 (278)
T ss_dssp TEEEEEEECCSHHHHHHHHHHHTS-TTSCEEEEESSSSCCTTTTC
T ss_pred cCCCEEEECCCHHHHHHHHHHHHc-cCCeEEEEecCCCCCCceee
Confidence 357999999999999999999751 59999999999999987755
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.60 E-value=1.9e-08 Score=87.09 Aligned_cols=42 Identities=14% Similarity=0.042 Sum_probs=39.4
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
...+||||||||++|++||..|++ .|++|+|+|+++.+||.+
T Consensus 3 ~~~yDviViGaG~~Gl~~A~~La~--~G~~V~vlE~~~~~GG~~ 44 (297)
T d2bcgg1 3 DTDYDVIVLGTGITECILSGLLSV--DGKKVLHIDKQDHYGGEA 44 (297)
T ss_dssp CCBCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCGGG
T ss_pred CCcCCEEEECcCHHHHHHHHHHHH--CCCCEEEEcCCCCCCcce
Confidence 456899999999999999999999 899999999999999976
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.59 E-value=1.3e-08 Score=88.22 Aligned_cols=35 Identities=20% Similarity=0.337 Sum_probs=32.3
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
.+||+||||||||++||.++++ .|.+|+|||+.+.
T Consensus 3 dYDviVIG~GpaGl~aA~~aa~--~G~kV~viE~~~~ 37 (235)
T d1h6va1 3 DFDLIIIGGGSGGLAAAKEAAK--FDKKVMVLDFVTP 37 (235)
T ss_dssp SEEEEEECCSHHHHHHHHHHGG--GCCCEEEECCCCC
T ss_pred cCCEEEECCCHHHHHHHHHHHH--CCCeEEEEeccCC
Confidence 5899999999999999999999 8999999997653
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=98.59 E-value=9.2e-08 Score=86.86 Aligned_cols=40 Identities=35% Similarity=0.500 Sum_probs=36.0
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
....||+|||+|+||+++|..|++ .|.+|+|+|+.+..||
T Consensus 21 ~et~DVvVIG~G~aGl~aA~~la~--~G~~V~llEk~~~~gG 60 (322)
T d1d4ca2 21 KETTDVVIIGSGGAGLAAAVSARD--AGAKVILLEKEPIPGG 60 (322)
T ss_dssp CEECSEEEECSSHHHHHHHHHHHT--TTCCEEEECSSSSSCT
T ss_pred CCcceEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCC
Confidence 345799999999999999999999 8999999999887665
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=98.58 E-value=1.7e-08 Score=91.56 Aligned_cols=44 Identities=30% Similarity=0.337 Sum_probs=40.2
Q ss_pred cCCCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 9 ISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 9 ~~~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
++.++++|+|||||+|||+||..|++ .|++|+|||+++.+||.+
T Consensus 26 ~~~~pkkV~IIGaG~aGLsaA~~L~~--~G~~V~vlE~~~~~GG~~ 69 (370)
T d2iida1 26 ATSNPKHVVIVGAGMAGLSAAYVLAG--AGHQVTVLEASERPGGRV 69 (370)
T ss_dssp CCSSCCEEEEECCBHHHHHHHHHHHH--HTCEEEEECSSSSSBTTC
T ss_pred CCCCCCeEEEECCCHHHHHHHHHHHH--CCCCEEEEeCCCCCCCee
Confidence 34567899999999999999999999 899999999999999865
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=98.58 E-value=1.8e-08 Score=90.07 Aligned_cols=39 Identities=21% Similarity=0.322 Sum_probs=37.4
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
|+|+|||||||||+||..|++ .|++|+|||+++.+||.+
T Consensus 2 KkV~IIGaG~aGL~aA~~La~--~G~~V~vlE~~~~~GG~~ 40 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKI--HGLNVTVFEAEGKAGGKL 40 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHT--TSCEEEEECSSSSSCSSC
T ss_pred CEEEEECcCHHHHHHHHHHHh--CCCCEEEEeCCCCCcCce
Confidence 789999999999999999999 899999999999999976
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.57 E-value=1.5e-08 Score=87.96 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=36.0
Q ss_pred CcEEEECccHHHHHHHHHHHhhC-CCCcEEEEcCCCCCCCce-eeCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLL-PQSTVDIYEKLPVPFGLV-RYGVAP 60 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~-~g~~v~lie~~~~~gg~~-~~g~~p 60 (388)
.+|+||||||||++||.++++.. .+.+|+++|+. .+||.| ++||.|
T Consensus 2 ~~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk~-~~GG~cln~GciP 49 (233)
T d1xdia1 2 TRIVILGGGPAGYEAALVAATSHPETTQVTVIDCD-GIGGAAVLDDCVP 49 (233)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCTTTEEEEEEESS-CTTHHHHHTSHHH
T ss_pred cEEEEECCCHHHHHHHHHHHHcCCCCCEEEEEecC-CCCceeecccccc
Confidence 48999999999999999988742 45689999986 677765 555543
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=98.55 E-value=4.8e-08 Score=85.29 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=33.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
...++|||||||++|+++|..|++ .|.+|+|+||....
T Consensus 4 ~~~~kVvVIGaGiaGl~~A~~L~~--~G~~V~vier~~~~ 41 (268)
T d1c0pa1 4 HSQKRVVVLGSGVIGLSSALILAR--KGYSVHILARDLPE 41 (268)
T ss_dssp CCSCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESSCTT
T ss_pred CCCCcEEEECccHHHHHHHHHHHH--CCCCEEEEeCCCCC
Confidence 345799999999999999999999 89999999997543
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=98.55 E-value=2.7e-08 Score=86.91 Aligned_cols=39 Identities=26% Similarity=0.342 Sum_probs=36.3
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCCCCCCCce
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKLPVPFGLV 54 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~~~~gg~~ 54 (388)
+||+|||||||||+||..|++ .|+ +|+|||+++.+||.+
T Consensus 1 P~V~IIGaG~aGL~aA~~L~~--~G~~~V~vlE~~~~~GG~~ 40 (347)
T d1b5qa1 1 PRVIVVGAGMSGISAAKRLSE--AGITDLLILEATDHIGGRM 40 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHH--TTCCCEEEECSSSSSBTTS
T ss_pred CCEEEECCcHHHHHHHHHHHh--CCCCcEEEEECCCCCCceE
Confidence 489999999999999999999 896 699999999999976
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.54 E-value=3e-08 Score=89.96 Aligned_cols=42 Identities=29% Similarity=0.293 Sum_probs=39.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
+++++|||||||+|||+||..|++ .|++|+|+|+++.+||.+
T Consensus 3 ~~~~kViVIGaG~aGL~aA~~L~~--~G~~V~VlEa~~r~GGr~ 44 (449)
T d2dw4a2 3 KKTGKVIIIGSGVSGLAAARQLQS--FGMDVTLLEARDRVGGRV 44 (449)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHH--TTCEEEEECSSSSSBTTC
T ss_pred CCCCcEEEECCCHHHHHHHHHHHh--CCCCEEEEeCCCCCcccE
Confidence 566889999999999999999999 899999999999999965
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=98.53 E-value=3.9e-08 Score=81.59 Aligned_cols=42 Identities=12% Similarity=0.007 Sum_probs=28.4
Q ss_pred CCceeEEecceEEEccccCCccCC----CCCcccCCCccccCCCCC
Q psy4525 305 TEDTELIPSGIAFRSIGYQSRCVD----SDIPFNEKSCTVIPKEGV 346 (388)
Q Consensus 305 ~~~~~~l~~D~Vi~a~G~~p~~~~----~~l~~~~~~gi~l~~~~~ 346 (388)
..++.++++|.+++++|.+|+... ....+..++++++|+...
T Consensus 94 ~~~~~~i~~d~~i~~~G~~~~~~~~~~~~~~~~~~~~~i~Vd~~~~ 139 (185)
T d1q1ra1 94 LSDGRALDYDRLVLATGGRPLIPNCELASAAGLQVDNGIVINEHMQ 139 (185)
T ss_dssp ETTSCEEECSEEEECCCEEEEEECCHHHHHTTCCBSSSEECCTTSB
T ss_pred eeceeEEEeeeeeeeeecccCCCCchhHHhCCccccCccccCCccc
Confidence 456678999999999999886532 112233356788876543
|
| >d1m6ia1 c.3.1.5 (A:128-263,A:401-477) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Apoptosis-inducing factor (AIF) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=7.8e-08 Score=82.06 Aligned_cols=80 Identities=11% Similarity=0.039 Sum_probs=54.3
Q ss_pred CCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCccCC----CCCcccC-CCcccc
Q psy4525 267 SNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRCVD----SDIPFNE-KSCTVI 341 (388)
Q Consensus 267 ~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~~~----~~l~~~~-~~gi~l 341 (388)
...+.||++++++.++++..++ . .+. +.+|++++||.||+|+|..|+... .+++++. .+++.+
T Consensus 92 ~~~~~gI~~~~g~~V~~id~~~-~---~V~--------l~dG~~i~~d~lViAtG~~~~~~~l~~~~gl~~~~~~~~i~v 159 (213)
T d1m6ia1 92 HIENGGVAVLTGKKVVQLDVRD-N---MVK--------LNDGSQITYEKCLIATGGTEPNVELAKTGGLEIDSDFGGFRV 159 (213)
T ss_dssp TSTTCEEEEEETCCEEEEEGGG-T---EEE--------ETTSCEEEEEEEEECCCEEEECCTTHHHHTCCBCTTTCSEEC
T ss_pred HHHHCCeEEEeCCEEEEeeccC-c---eee--------eccceeeccceEEEeeeeecchhhhhhccchhhhhhhhhhhh
Confidence 3457899999999999997543 2 233 466778999999999998766532 4566643 356777
Q ss_pred CCCCCCeecchhhHHhHHH
Q psy4525 342 PKEGVPVVTWEGWKAIDKE 360 (388)
Q Consensus 342 ~~~~~~~~~~~~w~~~~~~ 360 (388)
|++.. ...+.|...|++
T Consensus 160 d~~l~--~~~~VyA~GD~a 176 (213)
T d1m6ia1 160 NAELQ--ARSNIWVAGDAA 176 (213)
T ss_dssp CTTCE--EETTEEECGGGE
T ss_pred hHhcC--cCCceEEeeeee
Confidence 76543 224566666643
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=98.52 E-value=6.5e-08 Score=87.74 Aligned_cols=42 Identities=29% Similarity=0.385 Sum_probs=36.9
Q ss_pred cCCCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 9 ISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 9 ~~~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
.+....||+|||+|+||++||..+++ .|.+|+|+|+.+..+|
T Consensus 15 ~~~e~~DVvVIGaG~aGl~AA~~aa~--~G~~V~vlEK~~~~gG 56 (317)
T d1qo8a2 15 GPSETTQVLVVGAGSAGFNASLAAKK--AGANVILVDKAPFSGG 56 (317)
T ss_dssp CCSEEEEEEEECCSHHHHHHHHHHHH--HTCCEEEECSSSSSCT
T ss_pred CCCCccCEEEECcCHHHHHHHHHHHH--CCCcEEEEeCCCCCCC
Confidence 34556899999999999999999999 8999999999876654
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.49 E-value=3.9e-08 Score=84.13 Aligned_cols=39 Identities=28% Similarity=0.399 Sum_probs=34.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
.+||+||||||||++||.++++ .|.+|+|||+. .+||.+
T Consensus 3 ~~DviVIG~GpaGl~aA~~aar--~G~kV~vIEk~-~~GG~~ 41 (223)
T d1ebda1 3 ETETLVVGAGPGGYVAAIRAAQ--LGQKVTIVEKG-NLGGVC 41 (223)
T ss_dssp ECSEEEECCSHHHHHHHHHHHH--TTCCEEEEESS-CTTHHH
T ss_pred cCCEEEECCCHHHHHHHHHHHH--CCCEEEEEecC-CCCcce
Confidence 4799999999999999999999 89999999987 456654
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=98.49 E-value=1.6e-07 Score=84.40 Aligned_cols=33 Identities=21% Similarity=0.506 Sum_probs=30.2
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKLP 48 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~~ 48 (388)
.||+|||||.+|+++|.+|++ .|. +|+|+|+++
T Consensus 2 ~dViIIGaGi~G~s~A~~La~--~G~~~V~liE~~~ 35 (305)
T d1pj5a2 2 PRIVIIGAGIVGTNLADELVT--RGWNNITVLDQGP 35 (305)
T ss_dssp CCEEEECCSHHHHHHHHHHHH--TTCCCEEEECSSC
T ss_pred CCEEEECcCHHHHHHHHHHHH--cCCCcEEEEeCCC
Confidence 589999999999999999999 785 799999974
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.44 E-value=5.5e-08 Score=87.50 Aligned_cols=40 Identities=33% Similarity=0.294 Sum_probs=37.7
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
++||+|||||++|++||..|++ .|.+|+|||+.+++||.+
T Consensus 1 M~dv~IIGaG~sGl~~A~~L~~--~g~~V~iiEk~~~iGG~~ 40 (298)
T d1i8ta1 1 MYDYIIVGSGLFGAVCANELKK--LNKKVLVIEKRNHIGGNA 40 (298)
T ss_dssp CEEEEEECCSHHHHHHHHHHGG--GTCCEEEECSSSSSSGGG
T ss_pred CccEEEECCcHHHHHHHHHHHh--CCCcEEEEECCCCcccce
Confidence 3699999999999999999999 899999999999999986
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=98.44 E-value=7.5e-08 Score=85.69 Aligned_cols=39 Identities=26% Similarity=0.314 Sum_probs=36.8
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
.||+|||||++||+||..|++ .|++|+|||+++.+||.+
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~--~G~~V~vlE~~~~~GG~~ 39 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRS--RGTDAVLLESSARLGGAV 39 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHT--TTCCEEEECSSSSSBTTC
T ss_pred CeEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCCceE
Confidence 379999999999999999999 899999999999999975
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=98.42 E-value=8.2e-08 Score=87.02 Aligned_cols=40 Identities=23% Similarity=0.251 Sum_probs=38.0
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
.++|+|||||++||+||..|++ .|.+|+|+|+++++||.+
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k--~G~~V~viEk~~~iGG~~ 41 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAE--KGHQVHIIDQRDHIGGNS 41 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHT--TTCEEEEEESSSSSSGGG
T ss_pred CCEEEEECCcHHHHHHHHHHHh--CCCCEEEEECCCCCcCee
Confidence 5799999999999999999999 899999999999999976
|
| >d1d7ya1 c.3.1.5 (A:5-115,A:237-308) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=98.42 E-value=2.8e-08 Score=82.62 Aligned_cols=94 Identities=19% Similarity=0.187 Sum_probs=54.7
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHH------HHHhhcCCCcEEEce
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINT------FTKTGDNPRVNFYGN 86 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~------~~~~~~~~~i~~~~~ 86 (388)
+.+|+|||||++|+.+|..|++ .+.++++++..+.....+.+ | .....+... ........+++++.+
T Consensus 3 ~a~VvIIGgG~~G~e~A~~l~~--~g~~v~i~~~~~~~~~~~~~---~--~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 75 (183)
T d1d7ya1 3 KAPVVVLGAGLASVSFVAELRQ--AGYQGLITVVGDEAERPYDR---P--PLSKDFMAHGDAEKIRLDCKRAPEVEWLLG 75 (183)
T ss_dssp CSSEEEECCSHHHHHHHHHHHH--HTCCSCEEEEESSCSCCBCS---G--GGGTTHHHHCCGGGSBCCGGGSTTCEEEET
T ss_pred CCCEEEECccHHHHHHHHHHHh--cCCceEEEEEecccccchhh---H--HHhhhhhhhhhhhhHHHHHhhcCCeEEEEe
Confidence 3569999999999999999999 56555444433332211111 0 001111111 111234557888877
Q ss_pred EEEEE------Eeeecccc-cccCEEEEeeCCCC
Q psy4525 87 ICLGQ------DISLGDLT-NAYHAVVLTYGADN 113 (388)
Q Consensus 87 ~~v~~------~~~~~~~~-~~yd~lvlAtG~~~ 113 (388)
..+.. .+.+.+.+ ..||.||+|+|..|
T Consensus 76 ~~v~~i~~~~~~~~~~~g~~~~~D~vi~a~G~~p 109 (183)
T d1d7ya1 76 VTAQSFDPQAHTVALSDGRTLPYGTLVLATGAAP 109 (183)
T ss_dssp CCEEEEETTTTEEEETTSCEEECSEEEECCCEEE
T ss_pred ccccccccccceeEecCCcEeeeeeEEEEEEEEc
Confidence 65532 13344433 38999999999776
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=98.39 E-value=8.4e-08 Score=82.69 Aligned_cols=47 Identities=26% Similarity=0.421 Sum_probs=41.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce-eeCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV-RYGVAP 60 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~-~~g~~p 60 (388)
..+||+|||||||||+||.++++ .|.+|+|||+.+.+||.+ +.++.|
T Consensus 5 ~dyDviIIG~GPaGlsaA~~aa~--~G~~V~viE~~~~~GG~~~~~g~~~ 52 (229)
T d1ojta1 5 AEYDVVVLGGGPGGYSAAFAAAD--EGLKVAIVERYKTLGGVCLNVGCIP 52 (229)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSSCSSHHHHHHSHHH
T ss_pred CccCEEEECcCHHHHHHHHHHHH--CCCeEEEEeccCCCCCeeeccccch
Confidence 45899999999999999999999 899999999998899876 456543
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=98.38 E-value=1.3e-07 Score=80.79 Aligned_cols=40 Identities=25% Similarity=0.350 Sum_probs=35.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCc
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGL 53 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~ 53 (388)
++|||+||||||||++||.++++ .|.+|+|||+....++.
T Consensus 2 ~kYDviIIGgGpAGl~aA~~aar--~G~~V~viE~~~~~~~~ 41 (229)
T d3lada1 2 QKFDVIVIGAGPGGYVAAIKSAQ--LGLKTALIEKYKGKEGK 41 (229)
T ss_dssp CCCSEEEECCSHHHHHHHHHHHH--HTCCEEEEECCBCTTSS
T ss_pred CcCCEEEECcCHHHHHHHHHHHH--CCCeEEEEecccCCCcc
Confidence 46999999999999999999999 89999999987654443
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=1.8e-07 Score=85.30 Aligned_cols=38 Identities=24% Similarity=0.278 Sum_probs=36.4
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
||+|||||++||+||..|++ .|++|+|+|+++.+||.+
T Consensus 1 DViVIGaG~aGL~aA~~L~~--~G~~V~VlE~~~~~GGr~ 38 (383)
T d2v5za1 1 DVVVVGGGISGMAAAKLLHD--SGLNVVVLEARDRVGGRT 38 (383)
T ss_dssp SEEEECCBHHHHHHHHHHHH--TTCCEEEEESSSSSBTTC
T ss_pred CEEEECCCHHHHHHHHHHHh--CCCCEEEEecCCCCccee
Confidence 79999999999999999999 899999999999999966
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.26 E-value=2.9e-07 Score=83.13 Aligned_cols=46 Identities=35% Similarity=0.370 Sum_probs=41.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYG 57 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g 57 (388)
..+||+||||||||++||..|+++.+|++|+|||+.+.+||.+.++
T Consensus 49 ~~~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~g 94 (311)
T d2gjca1 49 AVSDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLG 94 (311)
T ss_dssp TEESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTCC
T ss_pred cCCCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEec
Confidence 4579999999999999999999755799999999999999988663
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=98.25 E-value=2.3e-06 Score=77.05 Aligned_cols=39 Identities=23% Similarity=0.350 Sum_probs=33.8
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPF 51 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~g 51 (388)
..||+|||+|+|||+||..+.+..++.+|+|+|+.+..+
T Consensus 5 ~~DVlVIG~G~AGl~AA~~a~~~~~g~~V~lleK~~~~~ 43 (311)
T d1kf6a2 5 QADLAIVGAGGAGLRAAIAAAQANPNAKIALISKVYPMR 43 (311)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHCTTCCEEEEESSCGGG
T ss_pred ecCEEEECccHHHHHHHHHHHHhCCCCEEEEEECCCCCC
Confidence 379999999999999999999855688999999986443
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.23 E-value=7.8e-07 Score=79.05 Aligned_cols=34 Identities=29% Similarity=0.462 Sum_probs=31.8
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
.+|+||||||+|+++|..|++ .|++|+|+|+.+.
T Consensus 3 ~~V~IvGaGp~Gl~~A~~L~~--~G~~v~vlE~~~~ 36 (292)
T d1k0ia1 3 TQVAIIGAGPSGLLLGQLLHK--AGIDNVILERQTP 36 (292)
T ss_dssp CSEEEECCSHHHHHHHHHHHH--HTCCEEEECSSCH
T ss_pred CCEEEECcCHHHHHHHHHHHH--CCCCEEEEeCCCC
Confidence 589999999999999999999 8999999999863
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.10 E-value=1e-06 Score=81.81 Aligned_cols=40 Identities=33% Similarity=0.416 Sum_probs=34.9
Q ss_pred CCcEEEECccHHHHHHHHHHHhh----CCCCcEEEEcCCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKL----LPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~----~~g~~v~lie~~~~~gg 52 (388)
.+|||||||||||++||..|++. ..|++|+|+||...+|.
T Consensus 32 e~DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~ 75 (380)
T d2gmha1 32 EADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGA 75 (380)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTT
T ss_pred cCCEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCC
Confidence 47999999999999999999862 26999999999987753
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=98.09 E-value=2.8e-06 Score=69.83 Aligned_cols=38 Identities=13% Similarity=0.246 Sum_probs=31.7
Q ss_pred CCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcc
Q psy4525 150 LDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGAL 208 (388)
Q Consensus 150 ~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~ 208 (388)
..+|+|+|||+|++|++.|..|+ ++| .+|+++.+.+.+
T Consensus 41 ~~~k~V~IIGaGPAGL~AA~~la--------------------~~G-~~Vtl~E~~~~~ 78 (179)
T d1ps9a3 41 VQKKNLAVVGAGPAGLAFAINAA--------------------ARG-HQVTLFDAHSEI 78 (179)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHH--------------------TTT-CEEEEEESSSSS
T ss_pred CCCcEEEEECccHHHHHHHHHHH--------------------hhc-cceEEEeccCcc
Confidence 34799999999999999999887 244 579999998754
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.05 E-value=1.8e-06 Score=75.75 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=33.4
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKLPVPF 51 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~~~~g 51 (388)
+.+|+||||||||+++|..|++ .|+ +|+|+|+.+.+.
T Consensus 1 ~~~V~IvGaG~aGl~~A~~L~~--~Gi~~V~V~Er~~~~~ 38 (288)
T d3c96a1 1 PIDILIAGAGIGGLSCALALHQ--AGIGKVTLLESSSEIR 38 (288)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCSEEEEEESSSSCC
T ss_pred CCEEEEECcCHHHHHHHHHHHh--CCCCeEEEEeCCCCCC
Confidence 4699999999999999999999 896 899999987764
|
| >d1djqa2 c.3.1.1 (A:490-645) Trimethylamine dehydrogenase, C-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, C-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=98.02 E-value=6.3e-06 Score=66.10 Aligned_cols=67 Identities=10% Similarity=0.030 Sum_probs=49.4
Q ss_pred CCCcEEEE--CccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEE
Q psy4525 12 LKPNVCIV--GSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICL 89 (388)
Q Consensus 12 ~~~~vvII--GaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v 89 (388)
..+.++|+ |||+.|+.+|..|++ .|.+|+++++.+.++.. ........+.+.+.+.|+++++++.+
T Consensus 38 ~~~~vvi~d~ggg~ig~e~A~~la~--~G~~Vtlv~~~~~~~~~----------~~~~~~~~~~~~l~~~GV~i~~~~~v 105 (156)
T d1djqa2 38 IGKRVVILNADTYFMAPSLAEKLAT--AGHEVTIVSGVHLANYM----------HFTLEYPNMMRRLHELHVEELGDHFC 105 (156)
T ss_dssp CCSEEEEEECCCSSHHHHHHHHHHH--TTCEEEEEESSCTTTHH----------HHTTCHHHHHHHHHHTTCEEEETEEE
T ss_pred cCCceEEEecCCChHHHHHHHHHHH--cCCeEEEEecCCccccc----------cchhHHHHHHHHHhhccceEEeccEE
Confidence 44566665 999999999999999 99999999998665311 11123344555566789999998887
Q ss_pred E
Q psy4525 90 G 90 (388)
Q Consensus 90 ~ 90 (388)
.
T Consensus 106 ~ 106 (156)
T d1djqa2 106 S 106 (156)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=97.99 E-value=1.3e-06 Score=75.03 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=36.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCCC--------CCCCce-eeCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKLP--------VPFGLV-RYGVAP 60 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~~--------~~gg~~-~~g~~p 60 (388)
+.|||+||||||||++||.++++ .+. .|+|+|+.. .+||.+ ++++.|
T Consensus 2 ~~YDviIIG~GpaGl~aA~~aa~--~g~k~V~iie~~~~~~~~~~~~lGG~c~n~g~ip 58 (238)
T d1aoga1 2 KIFDLVVIGAGSGGLEAAWNAAT--LYKKRVAVIDVQMVHGPPFFSALGGTCVNVGCVP 58 (238)
T ss_dssp CSBSEEEECCSHHHHHHHHHHHH--TSCCCEEEEESCSSSBTTTBCCTTHHHHHHSHHH
T ss_pred CccCEEEECCCHHHHHHHHHHHH--cCCCEEEEEEeecccCcccccccccccccccccc
Confidence 46899999999999999999999 775 688888753 345554 556544
|
| >d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=97.97 E-value=1.6e-05 Score=71.93 Aligned_cols=63 Identities=8% Similarity=-0.040 Sum_probs=38.0
Q ss_pred hhHHHHHHHhhCCCCCCCCCCceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccC
Q psy4525 249 RKRLTELILKTSNPDESKSNCSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
+..+..++..+.. ..+..+++++.|+++..++ ++. .|++.++. ..++.....+|.||+|+|..
T Consensus 112 ~~~~~~yl~~~~~--------~~~~~I~~~t~V~~v~~~~-~~w-~Vt~~~~~--~~~~~~~~~~d~VI~AtG~~ 174 (335)
T d2gv8a1 112 RHTIQEYQRIYAQ--------PLLPFIKLATDVLDIEKKD-GSW-VVTYKGTK--AGSPISKDIFDAVSICNGHY 174 (335)
T ss_dssp HHHHHHHHHHHHG--------GGGGGEECSEEEEEEEEET-TEE-EEEEEESS--TTCCEEEEEESEEEECCCSS
T ss_pred hHHHHHHHHHHHH--------HhhhcccCceEEEEEEecC-CEE-EEEEEecC--CCCeEEEEEeeEEEEccccc
Confidence 4455556555442 2345688899999998754 432 23333221 12233466799999999975
|
| >d1q1ra1 c.3.1.5 (A:2-114,A:248-319) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=97.96 E-value=3.6e-06 Score=69.22 Aligned_cols=36 Identities=28% Similarity=0.189 Sum_probs=30.3
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
..+|||||||++|+.+|..|++ .+.++++++..+..
T Consensus 3 ~~~VvIIGgG~~G~e~A~~l~~--~g~~v~v~~~~~~~ 38 (185)
T d1q1ra1 3 NDNVVIVGTGLAGVEVAFGLRA--SGWEGNIRLVGDAT 38 (185)
T ss_dssp SCEEEEECCSHHHHHHHHHHHH--TTCCSEEEEECSCC
T ss_pred CCCEEEECCcHHHHHHHHHHHH--cCCceEEEEecCcc
Confidence 4699999999999999999999 78887777655443
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=97.95 E-value=1.1e-06 Score=75.91 Aligned_cols=48 Identities=15% Similarity=0.246 Sum_probs=37.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCCCC--------CCCce-eeCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKLPV--------PFGLV-RYGVAPD 61 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~~~--------~gg~~-~~g~~p~ 61 (388)
+.+||+|||+||||++||.++++ .|. +|+|+|+... +||.+ +++|.|.
T Consensus 2 k~YDvvVIG~GpAG~~aAi~aa~--~g~k~V~vie~~~~~~~~~~~~iGGtc~~~gcip~ 59 (240)
T d1feca1 2 RAYDLVVIGAGSGGLEAGWNAAS--LHKKRVAVIDLQKHHGPPHYAALGGTCVNVGCVPK 59 (240)
T ss_dssp CSEEEEEECCSHHHHHHHHHHHH--HHCCCEEEEESCSSSBTTTBSCTTCHHHHHSHHHH
T ss_pred CccCEEEECCCHHHHHHHHHHHH--cCCCEEEEEEEeccCCcccccccccccccccchhh
Confidence 46899999999999999999998 675 6889998754 45554 4566443
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=97.88 E-value=4.4e-06 Score=75.67 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=33.6
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
+||+|||+|+|||+||.++++ .|.+|+|+|+.+..+|
T Consensus 6 ~DVvVIG~G~AGl~AAl~aa~--~G~~V~liEK~~~~~g 42 (336)
T d2bs2a2 6 CDSLVIGGGLAGLRAAVATQQ--KGLSTIVLSLIPVKRS 42 (336)
T ss_dssp CSEEEECCSHHHHHHHHHHHT--TTCCEEEECSSCGGGS
T ss_pred cCEEEECcCHHHHHHHHHHHH--CCCCEEEEecCCCCCC
Confidence 699999999999999999999 8999999999865543
|
| >d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=97.87 E-value=6.2e-06 Score=72.09 Aligned_cols=41 Identities=7% Similarity=0.075 Sum_probs=30.1
Q ss_pred CceeEEecceEEEccccCCccCC-------------CCCcccCCCccccCCCCC
Q psy4525 306 EDTELIPSGIAFRSIGYQSRCVD-------------SDIPFNEKSCTVIPKEGV 346 (388)
Q Consensus 306 ~~~~~l~~D~Vi~a~G~~p~~~~-------------~~l~~~~~~gi~l~~~~~ 346 (388)
.++++++||.||+|+|.+|++.. .++.+++++.|.+|++..
T Consensus 167 ~~g~~i~ad~viiAtG~~P~~~~i~~~~~~~~l~~~~Gl~~~~~G~I~Vn~~~~ 220 (261)
T d1mo9a1 167 AAGKVFKAKNLILAVGAGPGTLDVPEQPRSAELAKILGLDLGPKGEVLVNEYLQ 220 (261)
T ss_dssp ETTEEEEBSCEEECCCEECCCCCSTCEECCHHHHHHHTCCBCTTSCBCCCTTSB
T ss_pred cccceEeeeeeeeccCCCCCcCcccccccccccccceeeeeccCCEEEeCCCcc
Confidence 34578999999999999999753 135566666677776543
|
| >d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Flavoprotein BC4706 species: Bacillus cereus [TaxId: 1396]
Probab=97.86 E-value=2.7e-05 Score=67.08 Aligned_cols=47 Identities=11% Similarity=0.109 Sum_probs=36.8
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
+.|+++++++.++.+..+ ++.+..+.+ .+++.+.||.||+|+|-...
T Consensus 122 ~~gv~i~~~~~v~~i~~~-~~~~~~v~~--------~~g~~i~a~~vI~AtGg~S~ 168 (251)
T d2i0za1 122 DLGVKIRTNTPVETIEYE-NGQTKAVIL--------QTGEVLETNHVVIAVGGKSV 168 (251)
T ss_dssp HTTCEEECSCCEEEEEEE-TTEEEEEEE--------TTCCEEECSCEEECCCCSSS
T ss_pred HcCCcccCCcEEEEEEEE-CCEEEEEEe--------CCCCeEecCeEEEccCCccc
Confidence 568999999999999764 466666654 45568999999999997643
|
| >d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: HI0933 N-terminal domain-like domain: Hypothetical protein HI0933 species: Haemophilus influenzae [TaxId: 727]
Probab=97.86 E-value=2.1e-05 Score=68.19 Aligned_cols=48 Identities=6% Similarity=-0.064 Sum_probs=34.5
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQS 324 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p 324 (388)
+.|+++++++.++++...+++....+.. ..++.++.||.||+|||-.+
T Consensus 121 ~~gV~i~~~~~V~~i~~~~~~~~v~~~~-------~~~~~~~~a~~VIiAtGG~S 168 (253)
T d2gqfa1 121 KYGAKILLRSEVSQVERIQNDEKVRFVL-------QVNSTQWQCKNLIVATGGLS 168 (253)
T ss_dssp HHTCEEECSCCEEEEEECCSCSSCCEEE-------EETTEEEEESEEEECCCCSS
T ss_pred HcCCCeecCceEEEEEeecCCceeEEEE-------ecCCEEEEeCEEEEcCCccc
Confidence 5689999999999987755443222221 34456899999999999654
|
| >d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.84 E-value=1.1e-05 Score=69.07 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=19.1
Q ss_pred CCceeEEecceEEEccccCCccC
Q psy4525 305 TEDTELIPSGIAFRSIGYQSRCV 327 (388)
Q Consensus 305 ~~~~~~l~~D~Vi~a~G~~p~~~ 327 (388)
.++.+++++|.||+|||.+|...
T Consensus 136 dg~~~~i~ad~viiAtG~~p~~~ 158 (233)
T d1xdia1 136 DGSTSEHEADVVLVATGASPRIL 158 (233)
T ss_dssp TSCEEEEEESEEEECCCEEECCC
T ss_pred CCceeeeecceeeeecCcccccc
Confidence 35567899999999999998754
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=97.84 E-value=5.3e-06 Score=75.35 Aligned_cols=39 Identities=33% Similarity=0.479 Sum_probs=33.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhh---CCCCcEEEEcCCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKL---LPQSTVDIYEKLPVP 50 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~---~~g~~v~lie~~~~~ 50 (388)
..+||+||||||+|+++|..|++. ..|++|+|||+.+.+
T Consensus 6 ~~yDV~IvGaG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~ 47 (360)
T d1pn0a1 6 SYCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTK 47 (360)
T ss_dssp EEEEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSC
T ss_pred CCCCEEEECcCHHHHHHHHHHHhcccccCCCcEEEEcCCCCC
Confidence 458999999999999999999631 279999999998765
|
| >d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: L-aspartate oxidase species: Escherichia coli [TaxId: 562]
Probab=97.78 E-value=7.4e-06 Score=73.23 Aligned_cols=42 Identities=31% Similarity=0.402 Sum_probs=34.4
Q ss_pred CCCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCce
Q psy4525 10 SQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 10 ~~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~ 54 (388)
|...+||+|||+|+|||+||..+++ .+ +|+|+|+.+..||..
T Consensus 4 p~~~~DVvVVG~G~AGl~AA~~a~~--~g-~V~llEK~~~~gG~s 45 (305)
T d1chua2 4 PEHSCDVLIIGSGAAGLSLALRLAD--QH-QVIVLSKGPVTEGST 45 (305)
T ss_dssp CSEECSEEEECCSHHHHHHHHHHTT--TS-CEEEECSSCTTC---
T ss_pred CcccCCEEEECccHHHHHHHHHhhc--CC-CEEEEECCCCCCCch
Confidence 3456899999999999999999987 66 999999998777653
|
| >d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=97.72 E-value=9.1e-06 Score=68.75 Aligned_cols=34 Identities=24% Similarity=0.257 Sum_probs=27.9
Q ss_pred eEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcc
Q psy4525 154 EATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGAL 208 (388)
Q Consensus 154 ~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~ 208 (388)
.|+|||+|++|+++|..++ +.+ .+|++|.+++.+
T Consensus 5 DvvVIGgGpaGl~aA~~aa--------------------~~G-~kV~vie~~~~~ 38 (221)
T d1dxla1 5 DVVIIGGGPGGYVAAIKAA--------------------QLG-FKTTCIEKRGAL 38 (221)
T ss_dssp CEEEECCSHHHHHHHHHHH--------------------HHT-CCEEEEECSSSS
T ss_pred CEEEECCCHHHHHHHHHHH--------------------HCC-CcEEEEEecCCC
Confidence 5999999999999999776 234 469999987654
|
| >d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Succinate dehydogenase species: Escherichia coli [TaxId: 562]
Probab=97.71 E-value=5.3e-06 Score=75.18 Aligned_cols=40 Identities=23% Similarity=0.273 Sum_probs=35.8
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg 52 (388)
.+.+||+|||+|+|||+||..+.+ .|.+|+|+|+.+..+|
T Consensus 5 ~~~~DVlVVG~G~AGl~AAl~aa~--~G~~V~lleK~~~~gg 44 (330)
T d1neka2 5 VREFDAVVIGAGGAGMRAALQISQ--SGQTCALLSKVFPTRS 44 (330)
T ss_dssp EEEESCEEECCSHHHHHHHHHHHH--TTCCCEEECSSCGGGS
T ss_pred cccCCEEEECcCHHHHHHHHHHHH--cCCeEEEEeCCCCCCC
Confidence 446899999999999999999999 8999999999876654
|
| >d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.70 E-value=2.7e-05 Score=64.48 Aligned_cols=35 Identities=20% Similarity=0.119 Sum_probs=27.8
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
.++|+|||||++|+++|..++ +.+. +|.++.+...
T Consensus 5 ~~~VvIIGgGpaGl~aA~~~a--------------------r~g~-~v~vie~~~~ 39 (192)
T d1vdca1 5 NTRLCIVGSGPAAHTAAIYAA--------------------RAEL-KPLLFEGWMA 39 (192)
T ss_dssp EEEEEEECCSHHHHHHHHHHH--------------------HTTC-CCEEECCSSB
T ss_pred cceEEEECCCHHHHHHHHHHH--------------------HcCC-cEEEEEeecc
Confidence 478999999999999999776 3454 5888876544
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=97.70 E-value=1.3e-05 Score=73.22 Aligned_cols=51 Identities=14% Similarity=0.123 Sum_probs=39.5
Q ss_pred ceeEEEEecCcceeeeeCC-CCceeEEEEccCccccCCceeEEecceEEEccccC
Q psy4525 270 SKYFRPIFLRSPTEFKLND-NGAITGINFANQQALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~-~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
..++++++++.+++|..++ ++++.++++.+. .++....+.++.||+|.|..
T Consensus 230 ~~~~~l~~~a~V~~i~~~~~~~r~~gV~~~d~---~~g~~~~i~a~~vilaaGa~ 281 (379)
T d2f5va1 230 EERFNLFPAVACERVVRNALNSEIESLHIHDL---ISGDRFEIKADVYVLTAGAV 281 (379)
T ss_dssp EEEEEEECSEEEEEEEECTTSSCEEEEEEEET---TTCCEEEEEEEEEEECSCHH
T ss_pred CCCCEEecCCEEEEEEEeCCCCEEEEEEEEEC---CCCEEEEEeceEEEeccCcc
Confidence 5689999999999998764 357888877543 24555678999999999964
|
| >d1ps9a2 c.3.1.1 (A:466-627) 2,4-dienoyl-CoA reductase, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.62 E-value=0.00012 Score=58.59 Aligned_cols=28 Identities=29% Similarity=0.510 Sum_probs=24.8
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCc
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQST 40 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~ 40 (388)
...++|+|||||..|+-+|..+.+ .|.+
T Consensus 27 ~~gkrVvVIGgG~~g~d~a~~~~r--~G~~ 54 (162)
T d1ps9a2 27 PVGNKVAIIGCGGIGFDTAMYLSQ--PGES 54 (162)
T ss_dssp CCCSEEEEECCHHHHHHHHHHHTC--CSSC
T ss_pred ccCCceEEEcCchhHHHHHHHHHH--cCCc
Confidence 457899999999999999999999 6754
|
| >d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Adenylylsulfate reductase A subunit species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.59 E-value=3.2e-05 Score=70.27 Aligned_cols=40 Identities=25% Similarity=0.281 Sum_probs=33.6
Q ss_pred CCcEEEECccHHHHHHHHHHHhh--CCCCcEEEEcCCCCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKL--LPQSTVDIYEKLPVPFG 52 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~--~~g~~v~lie~~~~~gg 52 (388)
..||+|||+|+|||+||..+++. ..|.+|+|+|+.+..+|
T Consensus 21 e~DVlIIG~G~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg 62 (356)
T d1jnra2 21 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVEKAAVERS 62 (356)
T ss_dssp ECSEEEECCSHHHHHHHHHHHHHHTTTTCCEEEECSSCTTTC
T ss_pred ecCEEEECCCHHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCC
Confidence 47999999999999999998752 26999999999876543
|
| >d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=97.58 E-value=0.00017 Score=64.02 Aligned_cols=48 Identities=13% Similarity=0.146 Sum_probs=39.3
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIG 321 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G 321 (388)
+.|+++++++.++++..+++|+|.++...+. .+....+.|+.||+|||
T Consensus 157 ~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~~----~~~~~~i~Ak~VVlAtG 204 (308)
T d1y0pa2 157 KRNIDLRMNTRGIEVLKDDKGTVKGILVKGM----YKGYYWVKADAVILATG 204 (308)
T ss_dssp HTTCEEESSEEEEEEEECTTSCEEEEEEEET----TTEEEEEECSEEEECCC
T ss_pred hccceEEEeeccchhhhhccccccccccccc----ccceeEeecCeEEEccC
Confidence 5789999999999998877789999987542 23346789999999998
|
| >d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.56 E-value=9.7e-05 Score=62.09 Aligned_cols=33 Identities=18% Similarity=0.195 Sum_probs=26.7
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecC
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRG 206 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~ 206 (388)
..|+|||+|+.|+++|..++ +.+ .+|++|.+..
T Consensus 4 ~DviVIG~GpaGl~aA~~aa--------------------r~G-~kV~vIEk~~ 36 (223)
T d1ebda1 4 TETLVVGAGPGGYVAAIRAA--------------------QLG-QKVTIVEKGN 36 (223)
T ss_dssp CSEEEECCSHHHHHHHHHHH--------------------HTT-CCEEEEESSC
T ss_pred CCEEEECCCHHHHHHHHHHH--------------------HCC-CEEEEEecCC
Confidence 35999999999999999776 344 4699998764
|
| >d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=97.55 E-value=1.3e-05 Score=66.21 Aligned_cols=35 Identities=17% Similarity=0.129 Sum_probs=28.5
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
.++|+|||||++|++.|..++ +.+ .+|++|.|..+
T Consensus 5 ~~dVvIIGGGpaGl~AA~~~a--------------------r~g-~~v~iie~~~~ 39 (190)
T d1trba1 5 HSKLLILGSGPAGYTAAVYAA--------------------RAN-LQPVLITGMEK 39 (190)
T ss_dssp EEEEEEECCSHHHHHHHHHHH--------------------TTT-CCCEEECCSST
T ss_pred CCcEEEECCCHHHHHHHHHHH--------------------HcC-CceEEEEeecc
Confidence 578999999999999999886 344 46999987654
|
| >d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella putrefaciens [TaxId: 24]
Probab=97.55 E-value=0.00016 Score=64.62 Aligned_cols=48 Identities=10% Similarity=0.082 Sum_probs=38.7
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIG 321 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G 321 (388)
+.|+++++++.++++..+++++|.++...+. .+....+.|+.||+|||
T Consensus 164 ~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~----~~~~~~i~Ak~VIlAtG 211 (322)
T d1d4ca2 164 KRGTDIRLNSRVVRILEDASGKVTGVLVKGE----YTGYYVIKADAVVIAAG 211 (322)
T ss_dssp HTTCEEETTEEEEEEECCSSSCCCEEEEEET----TTEEEEEECSEEEECCC
T ss_pred hcCceEEEeeecccccccccccccceEEEee----cccEEEEeCCeEEEcCC
Confidence 5789999999999998877789998876542 23345799999999998
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=97.50 E-value=0.00012 Score=64.87 Aligned_cols=146 Identities=11% Similarity=0.074 Sum_probs=75.1
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCceEEec
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHVQTVFR 231 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~~~~~~ 231 (388)
.-+|+|||+|.+|+-+|..|. +.+. +|+++.+.+.+--. .+ ...-|+......
T Consensus 7 ~~dV~IIGAG~sGl~~a~~L~--------------------~~G~-~v~i~Ek~~~iGGt-----W~-~n~ypg~~~d~~ 59 (298)
T d1w4xa1 7 EVDVLVVGAGFSGLYALYRLR--------------------ELGR-SVHVIETAGDVGGV-----WY-WNRYPGARCDIE 59 (298)
T ss_dssp EEEEEEECCSHHHHHHHHHHH--------------------HTTC-CEEEECSSSSSCTH-----HH-HCCCTTCBCSSC
T ss_pred CCCEEEECccHHHHHHHHHHH--------------------hCCC-CEEEEEcCCCcccc-----cc-cCCCCCceeccc
Confidence 357999999999999999775 3554 69999886542100 00 000011000000
Q ss_pred ccc--cccchhhh-----ccccchhhHHHHHHHhhCCCCCCCCCCceeE--EEEecCcceeeeeCCCCceeEEEEccCcc
Q psy4525 232 NEQ--LCGVHEAS-----ATLARPRKRLTELILKTSNPDESKSNCSKYF--RPIFLRSPTEFKLNDNGAITGINFANQQA 302 (388)
Q Consensus 232 ~~~--~~~~~~~~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~gv--~~~~~~~~~~i~~~~~~~v~~v~~~~~~~ 302 (388)
... ........ ...-..++.+..++..++.. .++ .+++++.|+++..+++...=.|+
T Consensus 60 ~~~~~~s~~~~~~~~~~~~~~~p~~~e~~~Yl~~~a~~--------~~L~~~I~f~t~V~~~~~de~~~~W~V~------ 125 (298)
T d1w4xa1 60 SIEYCYSFSEEVLQEWNWTERYASQPEILRYINFVADK--------FDLRSGITFHTTVTAAAFDEATNTWTVD------ 125 (298)
T ss_dssp TTTSSCCSCHHHHHHCCCCBSSCBHHHHHHHHHHHHHH--------TTGGGGEECSCCEEEEEEETTTTEEEEE------
T ss_pred cccccccccccccCCCCCccccCccchHHHHHHHHHHH--------cCCcccccCCcEEEEEEEecCCCceeec------
Confidence 000 00000000 00001244555555555431 222 36778999988764433222232
Q ss_pred ccCCceeEEecceEEEccccCCccCC---CCCcccCCCccc
Q psy4525 303 LVTEDTELIPSGIAFRSIGYQSRCVD---SDIPFNEKSCTV 340 (388)
Q Consensus 303 ~~~~~~~~l~~D~Vi~a~G~~p~~~~---~~l~~~~~~gi~ 340 (388)
+.++.++.||.||+|||+...+.. .++++..++|+.
T Consensus 126 --~~~~~~~~~~~~i~atG~ls~~~~p~~~~~~i~g~~g~~ 164 (298)
T d1w4xa1 126 --TNHGDRIRARYLIMASGQLSDALTGALFKIDIRGVGNVA 164 (298)
T ss_dssp --ETTCCEEEEEEEEECCCSCCCCTTHHHHTSEEECGGGCB
T ss_pred --cccccccccceEEEeecccccccCCcccccccccCCCee
Confidence 455678999999999998544321 345544445554
|
| >d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GidA-like domain: GidA-related protein TTHA1897 species: Thermus thermophilus [TaxId: 274]
Probab=97.46 E-value=0.00017 Score=60.92 Aligned_cols=46 Identities=11% Similarity=0.079 Sum_probs=31.6
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
..++.++.. .++.+..+ ++.+.++. +.++.++.|..||+|||.--+
T Consensus 80 ~~nL~i~q~-~V~dli~e-~~~v~gV~--------t~~G~~~~AkaVILtTGTFL~ 125 (230)
T d2cula1 80 LRPLHLFQA-TATGLLLE-GNRVVGVR--------TWEGPPARGEKVVLAVGSFLG 125 (230)
T ss_dssp CTTEEEEEC-CEEEEEEE-TTEEEEEE--------ETTSCCEECSEEEECCTTCSS
T ss_pred hcCHHHHhc-cceeeEec-ccceeeEE--------eccccEEEEeEEEEccCccee
Confidence 456777654 45555543 46777775 456678999999999996544
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=97.37 E-value=0.00054 Score=60.34 Aligned_cols=47 Identities=23% Similarity=0.285 Sum_probs=36.8
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
+.|+++++++.++++..+ ++++.+|+ ++++ ++.||.||+|+|.-.+.
T Consensus 160 ~~gv~i~~~~~V~~i~~~-~~~v~~V~--------T~~g-~i~a~~VV~aaG~~s~~ 206 (305)
T d1pj5a2 160 SAGVTYRGSTTVTGIEQS-GGRVTGVQ--------TADG-VIPADIVVSCAGFWGAK 206 (305)
T ss_dssp HTTCEEECSCCEEEEEEE-TTEEEEEE--------ETTE-EEECSEEEECCGGGHHH
T ss_pred cccccccCCceEEEEEEe-CCEEEEEe--------ccce-eEECCEEEEecchhHHH
Confidence 568999999999999875 46777775 3444 69999999999976443
|
| >d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=97.33 E-value=0.00096 Score=53.93 Aligned_cols=31 Identities=23% Similarity=0.322 Sum_probs=25.3
Q ss_pred eEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeec
Q psy4525 154 EATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRR 205 (388)
Q Consensus 154 ~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~ 205 (388)
.|+|||||++|+++|..++ +.+ .+|++|.++
T Consensus 3 DViIIGgGpaGl~AAi~aa--------------------r~G-~~v~iie~~ 33 (184)
T d1fl2a1 3 DVLIVGSGPAGAAAAIYSA--------------------RKG-IRTGLMGER 33 (184)
T ss_dssp EEEEECCSHHHHHHHHHHH--------------------TTT-CCEEEECSS
T ss_pred cEEEECcCHHHHHHHHHHH--------------------HcC-CeEEEEEEe
Confidence 4899999999999999776 344 469999875
|
| >d1gtea3 c.3.1.1 (A:288-440) Dihydropyrimidine dehydrogenase, domain 3 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: C-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 3 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.32 E-value=0.00035 Score=55.30 Aligned_cols=37 Identities=22% Similarity=0.384 Sum_probs=31.0
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCc-EEEEcCCCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQST-VDIYEKLPV 49 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~-v~lie~~~~ 49 (388)
..+++|||||||.+|+-+|..+.+ .|.+ |+++.+.+.
T Consensus 43 ~~~~kVvVIGGGdtA~D~A~~a~r--~GA~~V~vi~rr~~ 80 (153)
T d1gtea3 43 SIRGAVIVLGAGDTAFDCATSALR--CGARRVFLVFRKGF 80 (153)
T ss_dssp CCCSEEEEECSSHHHHHHHHHHHH--TTCSEEEEECSSCG
T ss_pred cCCCEEEEECCChhHHHHHHHHHH--cCCcceeEEEeCCh
Confidence 346789999999999999999999 7765 889987643
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.30 E-value=8e-05 Score=61.33 Aligned_cols=37 Identities=14% Similarity=0.321 Sum_probs=32.4
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcc
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGAL 208 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~ 208 (388)
++||+|||||++|+++|..|+ +.|.++|+++.|++.+
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~--------------------~~G~~~V~v~E~~~~~ 40 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLA--------------------RLGYSDITIFEKQEYV 40 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHH--------------------HTTCCCEEEEESSSSC
T ss_pred CCEEEEECChHHHHHHHHHHH--------------------HCCCCeEEEEEecCcc
Confidence 689999999999999999886 4677679999998765
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=97.26 E-value=0.00012 Score=66.77 Aligned_cols=33 Identities=12% Similarity=0.095 Sum_probs=30.8
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
.+|||||+|++|+.+|..|.+ .|++|+|+|+..
T Consensus 3 v~VIVVGsG~aG~v~A~rLae--aG~~VlvLEaG~ 35 (367)
T d1n4wa1 3 VPAVVIGTGYGAAVSALRLGE--AGVQTLMLEMGQ 35 (367)
T ss_dssp EEEEEECCSHHHHHHHHHHHH--TTCCEEEEESSC
T ss_pred CeEEEeCcCHHHHHHHHHHHH--CcCeEEEEecCC
Confidence 489999999999999999999 899999999864
|
| >d1trba2 c.3.1.5 (A:119-244) Thioredoxin reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Escherichia coli [TaxId: 562]
Probab=97.23 E-value=0.0011 Score=50.38 Aligned_cols=64 Identities=17% Similarity=0.149 Sum_probs=49.8
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICL 89 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v 89 (388)
..++|+|||+|-+++..|..|.+ -..+|+++-|.+.+ ...+...+.+.+.....++.++.++.+
T Consensus 26 ~~k~V~VvGgGdsA~e~A~~L~~--~a~~V~li~r~~~~------------~~~~~~~~~~~~~~~~~~i~~~~~~~v 89 (126)
T d1trba2 26 RNQKVAVIGGGNTAVEEALYLSN--IASEVHLIHRRDGF------------RAEKILIKRLMDKVENGNIILHTNRTL 89 (126)
T ss_dssp TTSEEEEECSSHHHHHHHHHHTT--TSSEEEEECSSSSC------------CCCHHHHHHHHHHHHTSSEEEECSCEE
T ss_pred CCCEEEEECCCHHHHHHHHHHhh--cCCcEEEEeecccc------------cchhHHHHHHHHhhcccceeEecceEE
Confidence 56899999999999999999999 78899999987432 233445566666666778888877655
|
| >d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain {Fungus (Phanerochaete chrysosporium) [TaxId: 5306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Flavoprotein domain of flavocytochrome cellobiose dehydrogenase (CDH), FAD-binding domain species: Fungus (Phanerochaete chrysosporium) [TaxId: 5306]
Probab=97.21 E-value=0.00013 Score=66.61 Aligned_cols=34 Identities=26% Similarity=0.415 Sum_probs=32.0
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
++|+||||+|+||+.+|.+|.+ .+.+|+|+|+..
T Consensus 2 ~YD~IIVGsG~aG~v~A~rLae--~g~~VlvLEaG~ 35 (360)
T d1kdga1 2 PYDYIIVGAGPGGIIAADRLSE--AGKKVLLLERGG 35 (360)
T ss_dssp CEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSC
T ss_pred cCCEEEECcCHHHHHHHHHHhh--CCCeEEEEEccC
Confidence 5899999999999999999999 899999999874
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=97.20 E-value=0.0013 Score=56.13 Aligned_cols=35 Identities=14% Similarity=0.281 Sum_probs=29.6
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
.+||+|||+|.+|+-+|..|+ +.|. +|++++|++.
T Consensus 4 ~~kV~IiGaG~aGl~~A~~L~--------------------~~G~-~v~v~Er~~~ 38 (265)
T d2voua1 4 TDRIAVVGGSISGLTAALMLR--------------------DAGV-DVDVYERSPQ 38 (265)
T ss_dssp CSEEEEECCSHHHHHHHHHHH--------------------HTTC-EEEEECSSSS
T ss_pred CCcEEEECcCHHHHHHHHHHH--------------------HCCC-CEEEEeCCCC
Confidence 579999999999999999876 4565 7999998654
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=97.15 E-value=0.00015 Score=66.07 Aligned_cols=35 Identities=20% Similarity=0.201 Sum_probs=32.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
...|+||||+|++|+.+|..|.+ .|.+|+|+|+..
T Consensus 6 ~~~dvIVVGsG~aG~v~A~rLae--aG~~VlvLEaG~ 40 (370)
T d3coxa1 6 DRVPALVIGSGYGGAVAALRLTQ--AGIPTQIVEMGR 40 (370)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHH--TTCCEEEECSSC
T ss_pred CCCCEEEECcCHHHHHHHHHHHH--CCCeEEEEeCCC
Confidence 45799999999999999999999 899999999863
|
| >d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=97.15 E-value=0.00016 Score=60.56 Aligned_cols=32 Identities=9% Similarity=0.143 Sum_probs=26.2
Q ss_pred eEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecC
Q psy4525 154 EATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRG 206 (388)
Q Consensus 154 ~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~ 206 (388)
.|+|||+|+.|+++|..++ +.| .+|+++.+..
T Consensus 4 DvvVIG~G~aG~~aA~~a~--------------------~~G-~kV~iiE~~~ 35 (217)
T d1gesa1 4 DYIAIGGGSGGIASINRAA--------------------MYG-QKCALIEAKE 35 (217)
T ss_dssp EEEEECCSHHHHHHHHHHH--------------------TTT-CCEEEEESSC
T ss_pred CEEEECCCHHHHHHHHHHH--------------------HCC-CEEEEEeccC
Confidence 4899999999999999776 344 4699998753
|
| >d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Flavocytochrome c3 (respiratory fumarate reductase) species: Shewanella frigidimarina [TaxId: 56812]
Probab=97.13 E-value=0.00065 Score=60.44 Aligned_cols=49 Identities=10% Similarity=0.098 Sum_probs=39.0
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEcccc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
+.|+.+++++.++++..+++++|.++...+. .+....+.|+.||+|||=
T Consensus 160 ~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~~----~~~~~~i~Ak~VVlAtGG 208 (317)
T d1qo8a2 160 EQGIDTRLNSRVVKLVVNDDHSVVGAVVHGK----HTGYYMIGAKSVVLATGG 208 (317)
T ss_dssp HTTCCEECSEEEEEEEECTTSBEEEEEEEET----TTEEEEEEEEEEEECCCC
T ss_pred hccceeeeccchhheeecccccceeeEeecc----cceEEEEeccceEEeccc
Confidence 5789999999999987767789998877542 244457899999999993
|
| >d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.11 E-value=8.7e-05 Score=62.57 Aligned_cols=32 Identities=19% Similarity=0.020 Sum_probs=26.3
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeec
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRR 205 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~ 205 (388)
-.++|||+|+.|+++|..++ +.| .+|++|.+.
T Consensus 6 ~DlvVIG~GpaGl~aA~~aa--------------------~~G-~~V~liE~~ 37 (220)
T d1lvla1 6 TTLLIIGGGPGGYVAAIRAG--------------------QLG-IPTVLVEGQ 37 (220)
T ss_dssp CSEEEECCSHHHHHHHHHHH--------------------HHT-CCEEEECSS
T ss_pred cCEEEECCCHHHHHHHHHHH--------------------HCC-CcEEEEecC
Confidence 46999999999999999776 234 469999875
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.04 E-value=0.00039 Score=50.03 Aligned_cols=36 Identities=25% Similarity=0.373 Sum_probs=32.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
..++|+|+|.|-+|+++|..|.+ .|.+|+++|....
T Consensus 4 ~~K~v~ViGlG~sG~s~a~~L~~--~g~~v~~~D~~~~ 39 (93)
T d2jfga1 4 QGKNVVIIGLGLTGLSCVDFFLA--RGVTPRVMDTRMT 39 (93)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHH--TTCCCEEEESSSS
T ss_pred CCCEEEEEeECHHHHHHHHHHHH--CCCEEEEeeCCcC
Confidence 45789999999999999999999 8999999998643
|
| >d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.91 E-value=0.0015 Score=54.84 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=27.7
Q ss_pred eEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcc
Q psy4525 154 EATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGAL 208 (388)
Q Consensus 154 ~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~ 208 (388)
.|+|||+|+.|+.+|..++ +.+ .+|.++.+++.+
T Consensus 7 DviVIG~GpAGl~aA~~aa--------------------~~G-~kV~lie~~~~~ 40 (233)
T d1v59a1 7 DVVIIGGGPAGYVAAIKAA--------------------QLG-FNTACVEKRGKL 40 (233)
T ss_dssp EEEEECCSHHHHHHHHHHH--------------------HTT-CCEEEEESSSSS
T ss_pred CEEEECCCHHHHHHHHHHH--------------------HCC-CcEEEEEecCCc
Confidence 5999999999999999876 344 469999987653
|
| >d1fl2a2 c.3.1.5 (A:326-451) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains species: Escherichia coli [TaxId: 562]
Probab=96.91 E-value=0.0024 Score=48.45 Aligned_cols=61 Identities=18% Similarity=0.155 Sum_probs=45.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICL 89 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v 89 (388)
..++|+|||+|.+++..|..|.+ -..+|+++-|.+.+ ...+...+ +.....+++++.++.+
T Consensus 29 ~gk~V~VvGgG~sA~~~A~~L~~--~a~~V~li~r~~~~------------~~~~~~~~---~~~~~~~I~v~~~~~v 89 (126)
T d1fl2a2 29 KGKRVAVIGGGNSGVEAAIDLAG--IVEHVTLLEFAPEM------------KADQVLQD---KLRSLKNVDIILNAQT 89 (126)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHT--TBSEEEEECSSSSC------------CSCHHHHH---HHHTCTTEEEESSEEE
T ss_pred CCceEEEEeCCHHHHHHHHhhhc--cCCceEEEeccccc------------cccccccc---ccccccceeEEcCcce
Confidence 46899999999999999999999 67799999887543 12222222 2334467999988876
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=96.90 E-value=6.8e-05 Score=63.84 Aligned_cols=28 Identities=25% Similarity=0.271 Sum_probs=23.7
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEE
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIY 44 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~li 44 (388)
+|+|||||.+|+++|..|++ .|.+|+++
T Consensus 2 kV~VIGaGi~GlstA~~L~~--~G~~v~v~ 29 (246)
T d1kifa1 2 RVVVIGAGVIGLSTALCIHE--RYHSVLQP 29 (246)
T ss_dssp EEEEECCSHHHHHHHHHHHH--HHTTTSSS
T ss_pred EEEEECchHHHHHHHHHHHH--CCCCceEE
Confidence 79999999999999999999 67654433
|
| >d1feca1 c.3.1.5 (A:1-169,A:287-357) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Crithidia fasciculata [TaxId: 5656]
Probab=96.88 E-value=0.00072 Score=57.43 Aligned_cols=23 Identities=9% Similarity=0.083 Sum_probs=19.2
Q ss_pred CCceeEEecceEEEccccCCccC
Q psy4525 305 TEDTELIPSGIAFRSIGYQSRCV 327 (388)
Q Consensus 305 ~~~~~~l~~D~Vi~a~G~~p~~~ 327 (388)
....+.+++|.|++++|.+|...
T Consensus 144 ~~~~e~i~~~~i~ia~G~~p~~~ 166 (240)
T d1feca1 144 SAVLETLDTEYILLATGSWPQHL 166 (240)
T ss_dssp SCEEEEEEEEEEEECCCEEECCC
T ss_pred ccceEEEecceEEEecCCceeEc
Confidence 45567899999999999998754
|
| >d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium amagasakiense [TaxId: 63559]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Penicillium amagasakiense [TaxId: 63559]
Probab=96.84 E-value=0.00036 Score=64.27 Aligned_cols=36 Identities=22% Similarity=0.192 Sum_probs=32.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCC-CcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQ-STVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g-~~v~lie~~~~ 49 (388)
+.+|+||||||+||+.+|.+|.+ .+ .+|+|+|+.+.
T Consensus 23 ~tyD~IIVGsG~aG~vlA~rLae--~~~~~VLlLEaG~~ 59 (391)
T d1gpea1 23 KTYDYIIAGGGLTGLTVAAKLTE--NPKIKVLVIEKGFY 59 (391)
T ss_dssp CEEEEEEECCSHHHHHHHHHHHT--STTCCEEEEESSCC
T ss_pred CeeeEEEECcCHHHHHHHHHHHH--CCCCeEEEEcCCCC
Confidence 35999999999999999999998 55 79999999854
|
| >d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus niger [TaxId: 5061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glucose oxidase species: Aspergillus niger [TaxId: 5061]
Probab=96.81 E-value=0.00049 Score=63.14 Aligned_cols=37 Identities=22% Similarity=0.273 Sum_probs=31.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
+.+|+||||+|+||+.+|.+|.+. ++.+|+|+|+.+.
T Consensus 16 ~tyD~IIVGsG~aG~vlA~rLse~-~~~~VLvLEaG~~ 52 (385)
T d1cf3a1 16 RTVDYIIAGGGLTGLTTAARLTEN-PNISVLVIESGSY 52 (385)
T ss_dssp CEEEEEEECCSHHHHHHHHHHTTS-TTCCEEEEESSCC
T ss_pred CeEEEEEECcCHHHHHHHHHHHHC-CCCeEEEECCCCC
Confidence 458999999999999999999872 4589999999853
|
| >d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.76 E-value=0.00099 Score=55.60 Aligned_cols=31 Identities=16% Similarity=0.217 Sum_probs=25.4
Q ss_pred eEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeec
Q psy4525 154 EATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRR 205 (388)
Q Consensus 154 ~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~ 205 (388)
.++|||+|+.|+++|..++ +.+ .+|.++.+.
T Consensus 5 DviIIG~GpaG~~aA~~aa--------------------r~G-~kV~vIEk~ 35 (221)
T d3grsa1 5 DYLVIGGGSGGLASARRAA--------------------ELG-ARAAVVESH 35 (221)
T ss_dssp SEEEECCSHHHHHHHHHHH--------------------HTT-CCEEEEESS
T ss_pred CEEEECCCHHHHHHHHHHH--------------------HCC-CEEEEEecc
Confidence 4899999999999999776 344 469999864
|
| >d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=96.73 E-value=0.0023 Score=54.94 Aligned_cols=31 Identities=26% Similarity=0.377 Sum_probs=25.6
Q ss_pred eEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeec
Q psy4525 154 EATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRR 205 (388)
Q Consensus 154 ~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~ 205 (388)
.++|||+|+.|+.+|..++ +.|. +|.++.+.
T Consensus 3 DviVIG~G~aG~~aA~~aa--------------------~~G~-~V~liE~~ 33 (259)
T d1onfa1 3 DLIVIGGGSGGMAAARRAA--------------------RHNA-KVALVEKS 33 (259)
T ss_dssp SEEEECCSHHHHHHHHHHH--------------------HTTC-CEEEEESS
T ss_pred eEEEECCCHHHHHHHHHHH--------------------HCCC-eEEEEecC
Confidence 3899999999999999776 3454 69999874
|
| >d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.72 E-value=0.0041 Score=52.18 Aligned_cols=33 Identities=18% Similarity=0.202 Sum_probs=26.7
Q ss_pred eEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 154 EATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 154 ~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
.|+|||+|+.|+.+|..++ +.+ .+|.++.+.+.
T Consensus 5 DviVIG~GpaGl~aA~~aa--------------------~~G-~kV~viE~~~~ 37 (235)
T d1h6va1 5 DLIIIGGGSGGLAAAKEAA--------------------KFD-KKVMVLDFVTP 37 (235)
T ss_dssp EEEEECCSHHHHHHHHHHG--------------------GGC-CCEEEECCCCC
T ss_pred CEEEECCCHHHHHHHHHHH--------------------HCC-CeEEEEeccCC
Confidence 5999999999999999887 344 46999986553
|
| >d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Glycine oxidase ThiO species: Bacillus sp. [TaxId: 1409]
Probab=96.70 E-value=0.0029 Score=54.42 Aligned_cols=45 Identities=11% Similarity=-0.127 Sum_probs=33.8
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
+.|+++++++.++++..+ +.+..|+ +.++ ++.||.||+|+|.-..
T Consensus 163 ~~Gv~i~~~~~V~~i~~~--~~~~~V~--------t~~g-~i~a~~vV~AaG~~s~ 207 (276)
T d1ryia1 163 MLGAEIFEHTPVLHVERD--GEALFIK--------TPSG-DVWANHVVVASGVWSG 207 (276)
T ss_dssp HTTCEEETTCCCCEEECS--SSSEEEE--------ETTE-EEEEEEEEECCGGGTH
T ss_pred HcCCEEecceEEEeEEee--cceEEEe--------cCCe-EEEcCEEEECCCccHH
Confidence 678999999999999854 4455554 3344 6899999999996543
|
| >d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond (Prunus dulcis) [TaxId: 3755]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Hydroxynitrile lyase species: Almond (Prunus dulcis) [TaxId: 3755]
Probab=96.69 E-value=0.00037 Score=63.19 Aligned_cols=34 Identities=24% Similarity=0.294 Sum_probs=30.5
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
.+|+||||+|+||+.+|.+|.+ . .+|+|+|+.+.
T Consensus 26 ~YD~IIVGsG~aG~vlA~rLae--~-~kVLvLEaG~~ 59 (351)
T d1ju2a1 26 SYDYVIVGGGTSGCPLAATLSE--K-YKVLVLERGSL 59 (351)
T ss_dssp EEEEEEECCSTTHHHHHHHHTT--T-SCEEEECSSBC
T ss_pred CccEEEECccHHHHHHHHHhcC--C-CCEEEEecCCC
Confidence 4799999999999999999987 4 89999999854
|
| >d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=96.68 E-value=0.0016 Score=54.23 Aligned_cols=32 Identities=13% Similarity=0.103 Sum_probs=25.8
Q ss_pred eEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecC
Q psy4525 154 EATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRG 206 (388)
Q Consensus 154 ~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~ 206 (388)
.|+|||+|+.|+.+|..++ +.+ .+|.++.+..
T Consensus 5 DviIIGgGpAGl~aA~~aa--------------------r~G-~~V~viE~~~ 36 (229)
T d3lada1 5 DVIVIGAGPGGYVAAIKSA--------------------QLG-LKTALIEKYK 36 (229)
T ss_dssp SEEEECCSHHHHHHHHHHH--------------------HHT-CCEEEEECCB
T ss_pred CEEEECcCHHHHHHHHHHH--------------------HCC-CeEEEEeccc
Confidence 4999999999999999876 234 4699998754
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=96.64 E-value=0.0007 Score=54.50 Aligned_cols=33 Identities=15% Similarity=0.113 Sum_probs=31.3
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
.++|+|||+|..|..+|.+|.+ .|++|+|+||+
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~~--~g~~V~v~dr~ 34 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLTD--SGIKVTVACRT 34 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHHT--TTCEEEEEESC
T ss_pred CCEEEEECCCHHHHHHHHHHHh--CCCEEEEEECC
Confidence 4799999999999999999999 89999999987
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.63 E-value=0.0053 Score=52.53 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=30.2
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcc
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGAL 208 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~ 208 (388)
-+|+|||||.+|+=+|..|+ +.|..+|++++|++..
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~--------------------~~Gi~~V~V~Er~~~~ 37 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALH--------------------QAGIGKVTLLESSSEI 37 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHH--------------------HTTCSEEEEEESSSSC
T ss_pred CEEEEECcCHHHHHHHHHHH--------------------hCCCCeEEEEeCCCCC
Confidence 47999999999999999775 4676689999998764
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.57 E-value=0.00083 Score=52.83 Aligned_cols=45 Identities=11% Similarity=0.218 Sum_probs=37.1
Q ss_pred CccccccccCCCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 1 MMKRVYSTISQLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 1 ~~~~~~~~~~~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
||+...-......++|+|||||..|+.-|..|.+ .|.+|+|+...
T Consensus 1 ~~~~lpl~~~l~gkrvLViGgG~va~~ka~~Ll~--~GA~VtVvap~ 45 (150)
T d1kyqa1 1 MVKSLQLAHQLKDKRILLIGGGEVGLTRLYKLMP--TGCKLTLVSPD 45 (150)
T ss_dssp CCCCEEEEECCTTCEEEEEEESHHHHHHHHHHGG--GTCEEEEEEEE
T ss_pred CcccchhheeeCCCEEEEECCCHHHHHHHHHHHH--CCCEEEEEeCC
Confidence 5555444444578999999999999999999999 89999999754
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=96.42 E-value=0.0015 Score=52.77 Aligned_cols=32 Identities=16% Similarity=0.187 Sum_probs=30.6
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
++|+|||+|..|..+|..|.+ .|++|+++++.
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~--~G~~V~~~~r~ 33 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLAL--KGQSVLAWDID 33 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred CEEEEECccHHHHHHHHHHHH--CCCEEEEEECC
Confidence 689999999999999999999 89999999986
|
| >d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: p-Hydroxybenzoate hydroxylase, PHBH species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.40 E-value=0.0073 Score=52.26 Aligned_cols=33 Identities=18% Similarity=0.383 Sum_probs=27.8
Q ss_pred eEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 154 EATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 154 ~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
+|+|||+|.+|+-+|..|+ +.|. +|+++.|++.
T Consensus 4 ~V~IvGaGp~Gl~~A~~L~--------------------~~G~-~v~vlE~~~~ 36 (292)
T d1k0ia1 4 QVAIIGAGPSGLLLGQLLH--------------------KAGI-DNVILERQTP 36 (292)
T ss_dssp SEEEECCSHHHHHHHHHHH--------------------HHTC-CEEEECSSCH
T ss_pred CEEEECcCHHHHHHHHHHH--------------------HCCC-CEEEEeCCCC
Confidence 6999999999999999886 3455 6999998763
|
| >d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Ferredoxin:NADP reductase FprA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.39 E-value=0.00063 Score=57.46 Aligned_cols=44 Identities=30% Similarity=0.506 Sum_probs=40.2
Q ss_pred CCCCCeecchhhHHhHHHHHHccccCCCCccccCCHHHHHhhhc
Q psy4525 343 KEGVPVVTWEGWKAIDKEETERGKLKGKPREKIISIEEMISVSG 386 (388)
Q Consensus 343 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 386 (388)
.++...++|.+|.+||++|..+|+..|++|.|+++.+|||..++
T Consensus 195 ~~~v~~v~~~~w~~id~~E~~~g~~~G~~R~k~~~~~~ml~~~~ 238 (239)
T d1lqta2 195 ARQPKLVTSAHWQVIDAFERAAGEPHGRPRVKLASLAELLRIGL 238 (239)
T ss_dssp HHCTTCEEHHHHHHHHHHHHHHHGGGTSSCCCCCSHHHHHHHHC
T ss_pred hcCCCccCccccccchHHHHhcchhcCCCeEeccCHHHHHhhhc
Confidence 45667889999999999999999999999999999999998764
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.38 E-value=0.0017 Score=54.58 Aligned_cols=45 Identities=40% Similarity=0.784 Sum_probs=41.7
Q ss_pred CCCCCeecchhhHHhHHHHHHccccCCCCccccCCHHHHHhhhcc
Q psy4525 343 KEGVPVVTWEGWKAIDKEETERGKLKGKPREKIISIEEMISVSGN 387 (388)
Q Consensus 343 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~ 387 (388)
.+++..++|.+|.+||+.|.++|+..|++|.|+++.+|||.++++
T Consensus 186 ~~gv~~V~~~~w~~Id~~E~~~G~~~Gk~R~k~~~~~eml~~~g~ 230 (230)
T d1cjca2 186 SRGVWPVSFSDWEKLDAEEVSRGQASGKPREKLLDPQEMLRLLGH 230 (230)
T ss_dssp HHTCCCBCHHHHHHHHHHHHHHHHHHTSSCCCCCCHHHHHHHTTC
T ss_pred hcCCCeeccccHHHHHHHHHHhCcccCCCeEeecCHHHHHHhhCC
Confidence 457788999999999999999999999999999999999999875
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=96.03 E-value=0.0028 Score=54.82 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=29.3
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
+|||+|||+|.+|+-+|..|+ +.|. +|+++++++.
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La--------------------~~G~-~V~vlE~~~~ 35 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLK--------------------IHGL-NVTVFEAEGK 35 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHH--------------------TTSC-EEEEECSSSS
T ss_pred CCEEEEECcCHHHHHHHHHHH--------------------hCCC-CEEEEeCCCC
Confidence 589999999999999999886 3454 7999998654
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.98 E-value=0.0043 Score=49.81 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=32.2
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
++-+|+|||+|.+|+.|+..+.+ .|..|++||.+.
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~--lGA~V~v~D~~~ 62 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKR--LGAVVMATDVRA 62 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCS
T ss_pred CCcEEEEEcCcHHHHHHHHHHHH--cCCEEEEEeccH
Confidence 45799999999999999999999 899999999773
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=95.96 E-value=0.0041 Score=49.22 Aligned_cols=34 Identities=24% Similarity=0.309 Sum_probs=31.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
++-+|+|||+|.+|+.|+..+.+ .|..|++||.+
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~--lGA~V~~~D~~ 64 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVG--LGAQVQIFDIN 64 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred CCcEEEEECCChHHHHHHHHHhh--CCCEEEEEeCc
Confidence 46799999999999999999999 89999999976
|
| >d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]
Probab=95.95 E-value=0.015 Score=50.09 Aligned_cols=55 Identities=11% Similarity=0.170 Sum_probs=34.6
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEc------cCccccCCceeEEecceEEEccccCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFA------NQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~------~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
..++.+.+.+.+..+... ++++.++... ............+.++.||.|+|....
T Consensus 126 ~~~~~~~~~~~~~~~~~~-~~~v~gv~~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~~~ 186 (278)
T d1rp0a1 126 RPNVKLFNAVAAEDLIVK-GNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCGHDGP 186 (278)
T ss_dssp STTEEEEETEEEEEEEEE-TTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCCSSST
T ss_pred hCCCEEEeCCcceeeeec-CCeEEEEEeccceeeeeecccccccceeeccceEEECcCCCcc
Confidence 456777777777666553 3566665432 111122345578999999999997654
|
| >d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Wolinella succinogenes [TaxId: 844]
Probab=95.83 E-value=0.0073 Score=53.47 Aligned_cols=50 Identities=12% Similarity=-0.044 Sum_probs=37.5
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccC
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
..++++++++.++++..+ ++++.++...+. .+++...+.++.||+|||--
T Consensus 170 ~~gv~i~~~~~~~~li~~-~~~v~g~~~~~~---~~g~~~~i~Ak~VvlATGG~ 219 (336)
T d2bs2a2 170 KLGVSIQDRKEAIALIHQ-DGKCYGAVVRDL---VTGDIIAYVAKGTLIATGGY 219 (336)
T ss_dssp HHTCEEECSEEEEEEEEE-TTEEEEEEEEET---TTCCEEEEECSEEEECCCCC
T ss_pred hccccccceeeeeecccc-cccccceeEEec---cCCcEEEEecCeEEEecccc
Confidence 568999999998888764 477777665432 25666789999999999844
|
| >d1vdca2 c.3.1.5 (A:118-243) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Thioredoxin reductase species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=95.76 E-value=0.021 Score=43.18 Aligned_cols=62 Identities=18% Similarity=0.166 Sum_probs=46.5
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCCCcchhHHHHHHHHhhcCCCcEEEceEEEE
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPDHPEVKNVINTFTKTGDNPRVNFYGNICLG 90 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~~~~~~~~~~~~~~~~~~~~i~~~~~~~v~ 90 (388)
+.++|+|||+|-+++..|..|.+ --.+|+++-|.+.+. ..+... .+.....+++++.++.+.
T Consensus 33 rgk~V~VvGgGdsA~e~A~~L~~--~a~~V~li~r~~~~r------------a~~~~~---~~l~~~~nI~v~~~~~v~ 94 (130)
T d1vdca2 33 RNKPLAVIGGGDSAMEEANFLTK--YGSKVYIIHRRDAFR------------ASKIMQ---QRALSNPKIDVIWNSSVV 94 (130)
T ss_dssp TTSEEEEECCSHHHHHHHHHHTT--TSSEEEEECSSSSCC------------SCHHHH---HHHHTCTTEEEECSEEEE
T ss_pred CCCEEEEEcCchHHHHHHHHHhC--CCCcEEEEEeccccc------------cchhhh---hccccCCceEEEeccEEE
Confidence 46899999999999999999999 678999999885532 112222 333455689999887763
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=95.74 E-value=0.0042 Score=47.38 Aligned_cols=32 Identities=16% Similarity=0.255 Sum_probs=30.0
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
.+|+|+|+|..|...|..|.+ .|.+|+++|++
T Consensus 1 M~IvI~G~G~~G~~la~~L~~--~g~~v~vid~d 32 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSE--KGHDIVLIDID 32 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHH--CCCCcceecCC
Confidence 379999999999999999999 89999999986
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=95.73 E-value=0.0055 Score=48.40 Aligned_cols=35 Identities=20% Similarity=0.403 Sum_probs=31.9
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVP 50 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~ 50 (388)
++|+|||+|..|...|..|.+ .|.+|++++|.+..
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~--~G~~V~~~~r~~~~ 35 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCK--QGHEVQGWLRVPQP 35 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSSCCS
T ss_pred CEEEEECcCHHHHHHHHHHHH--CCCceEEEEcCHHH
Confidence 379999999999999999999 89999999998653
|
| >d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=95.72 E-value=0.0032 Score=52.77 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=27.8
Q ss_pred eEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcc
Q psy4525 154 EATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGAL 208 (388)
Q Consensus 154 ~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~ 208 (388)
.|+|||+|+.|+.+|..++ +.+ .+|++|.+.+.+
T Consensus 8 DviIIG~GPaGlsaA~~aa--------------------~~G-~~V~viE~~~~~ 41 (229)
T d1ojta1 8 DVVVLGGGPGGYSAAFAAA--------------------DEG-LKVAIVERYKTL 41 (229)
T ss_dssp EEEEECCSHHHHHHHHHHH--------------------HTT-CCEEEEESSSCS
T ss_pred CEEEECcCHHHHHHHHHHH--------------------HCC-CeEEEEeccCCC
Confidence 5999999999999999876 344 479999987643
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=95.69 E-value=0.0053 Score=46.78 Aligned_cols=32 Identities=13% Similarity=0.122 Sum_probs=30.3
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
|+++|||+|..|..+|..|.+ .|.+|+++|.+
T Consensus 1 k~~iIiG~G~~G~~la~~L~~--~g~~vvvid~d 32 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHR--MGHEVLAVDIN 32 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHH--TTCCCEEEESC
T ss_pred CEEEEECCCHHHHHHHHHHHH--CCCeEEEecCc
Confidence 579999999999999999999 89999999976
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=95.62 E-value=0.0059 Score=53.98 Aligned_cols=36 Identities=19% Similarity=0.371 Sum_probs=28.9
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcc
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGAL 208 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~ 208 (388)
.|+|+|||+|.+|+-+|..|+ +.| .+|+++++++.+
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~--------------------k~G-~~V~viEk~~~i 37 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLA--------------------EKG-HQVHIIDQRDHI 37 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHH--------------------TTT-CEEEEEESSSSS
T ss_pred CCEEEEECCcHHHHHHHHHHH--------------------hCC-CCEEEEECCCCC
Confidence 589999999999999999887 233 468888877654
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.60 E-value=0.0038 Score=52.66 Aligned_cols=34 Identities=15% Similarity=0.281 Sum_probs=28.4
Q ss_pred eEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 154 EATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 154 ~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
+|+|||+|.+|+-+|..|+ +.|.++|+++++++.
T Consensus 2 ~V~IIGaG~aGL~aA~~L~--------------------~~G~~~V~vlE~~~~ 35 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLS--------------------EAGITDLLILEATDH 35 (347)
T ss_dssp CEEEECCBHHHHHHHHHHH--------------------HTTCCCEEEECSSSS
T ss_pred CEEEECCcHHHHHHHHHHH--------------------hCCCCcEEEEECCCC
Confidence 6999999999999999886 456557999988764
|
| >d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain domain: Fumarate reductase species: Escherichia coli [TaxId: 562]
Probab=95.59 E-value=0.083 Score=46.03 Aligned_cols=48 Identities=10% Similarity=0.097 Sum_probs=37.0
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIG 321 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G 321 (388)
..+|+++.++.++++..+ ++++.++...+. .+++-..+.|+.||+|||
T Consensus 147 ~~~v~i~~~~~v~~Ll~d-~g~v~Gvv~~~~---~~g~~~~~~AkaVILATG 194 (311)
T d1kf6a2 147 FPQIQRFDEHFVLDILVD-DGHVRGLVAMNM---MEGTLVQIRANAVVMATG 194 (311)
T ss_dssp CTTEEEEETEEEEEEEEE-TTEEEEEEEEET---TTTEEEEEECSCEEECCC
T ss_pred cCcceeEeeeEeeeeEec-CCcceeEEEEEc---CCCcEEEEECCEEEEcCC
Confidence 568999999999999875 478887765331 245556789999999998
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=95.55 E-value=0.0072 Score=44.65 Aligned_cols=35 Identities=17% Similarity=0.188 Sum_probs=31.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
-..++|+|||+|..|...|..|.+ .|.+|++++..
T Consensus 10 l~~k~vlVvG~G~va~~ka~~ll~--~ga~v~v~~~~ 44 (113)
T d1pjqa1 10 LRDRDCLIVGGGDVAERKARLLLE--AGARLTVNALT 44 (113)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHH--TTBEEEEEESS
T ss_pred eCCCEEEEECCCHHHHHHHHHHHH--CCCeEEEEecc
Confidence 356899999999999999999999 89999999854
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=95.19 E-value=0.011 Score=47.89 Aligned_cols=35 Identities=14% Similarity=0.043 Sum_probs=31.6
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
.-++|+|||+|..|...|..++. .|++|+++|+++
T Consensus 3 ~I~~vaViGaG~mG~~iA~~~a~--~G~~V~l~D~~~ 37 (186)
T d1wdka3 3 DVKQAAVLGAGIMGGGIAYQSAS--KGTPILMKDINE 37 (186)
T ss_dssp CCSSEEEECCHHHHHHHHHHHHH--TTCCEEEECSSH
T ss_pred CCCEEEEECcCHHHHHHHHHHHh--CCCeEEEEECCH
Confidence 44789999999999999999999 899999999863
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=95.17 E-value=0.0064 Score=53.29 Aligned_cols=47 Identities=11% Similarity=0.149 Sum_probs=33.1
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEcccc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
+.|+.+++++.|++|..++++ +. +.+.+ ..+++++++||.||+|++.
T Consensus 247 ~~g~~i~~~~~V~~I~~~~~~-v~-v~~~~----~~~~~~~~~aD~VI~A~p~ 293 (370)
T d2iida1 247 DIQDKVHFNAQVIKIQQNDQK-VT-VVYET----LSKETPSVTADYVIVCTTS 293 (370)
T ss_dssp HTGGGEESSCEEEEEEECSSC-EE-EEEEC----SSSCCCEEEESEEEECSCH
T ss_pred hcCCccccCceEEEEEEeCCe-EE-EEEEe----cCCCeEEEEeeEEEecCCH
Confidence 347889999999999876533 32 22211 2466788999999999964
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.06 E-value=0.011 Score=48.15 Aligned_cols=33 Identities=24% Similarity=0.271 Sum_probs=31.0
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
++|+|||+|..|..-|..++. .|++|+++|+.+
T Consensus 5 kkvaViGaG~mG~~iA~~~a~--~G~~V~l~D~~~ 37 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAA--TGHTVVLVDQTE 37 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHH--TTCEEEEECSCH
T ss_pred EEEEEECcCHHHHHHHHHHHh--CCCcEEEEECCh
Confidence 699999999999999999999 899999999874
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=94.85 E-value=0.022 Score=44.17 Aligned_cols=36 Identities=19% Similarity=0.223 Sum_probs=32.5
Q ss_pred CCCCcEEEEC-ccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 11 QLKPNVCIVG-SGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 11 ~~~~~vvIIG-aG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
...++|.||| .|..|.+.|..|.+ .|++|+++|+..
T Consensus 7 ~~~~kI~iIGg~G~mG~~la~~L~~--~G~~V~~~d~~~ 43 (152)
T d2pv7a2 7 SDIHKIVIVGGYGKLGGLFARYLRA--SGYPISILDRED 43 (152)
T ss_dssp TTCCCEEEETTTSHHHHHHHHHHHT--TTCCEEEECTTC
T ss_pred CCCCeEEEEcCCCHHHHHHHHHHHH--cCCCcEeccccc
Confidence 3458999999 69999999999999 899999999874
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=94.79 E-value=0.014 Score=48.99 Aligned_cols=38 Identities=24% Similarity=0.394 Sum_probs=31.4
Q ss_pred CCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcc
Q psy4525 150 LDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGAL 208 (388)
Q Consensus 150 ~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~ 208 (388)
...++|+|||+|++|+.+|..|+ +.+ -+|+++.+++.+
T Consensus 47 ~~~k~VvIIGaGpAGl~aA~~l~--------------------~~G-~~v~l~E~~~~~ 84 (233)
T d1djqa3 47 KNKDSVLIVGAGPSGSEAARVLM--------------------ESG-YTVHLTDTAEKI 84 (233)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHH--------------------HTT-CEEEEECSSSST
T ss_pred cCCceEEEEcccHHHHHHHHHHH--------------------Hhc-cceeeEeecccc
Confidence 45799999999999999999876 344 369999988754
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.60 E-value=0.017 Score=44.89 Aligned_cols=36 Identities=19% Similarity=0.322 Sum_probs=29.6
Q ss_pred CCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeec
Q psy4525 149 SLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRR 205 (388)
Q Consensus 149 ~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~ 205 (388)
..++|+|+|||||.+|.+-|..|. +.|+ +||++...
T Consensus 10 ~l~gkrvLViGgG~va~~ka~~Ll--------------------~~GA-~VtVvap~ 45 (150)
T d1kyqa1 10 QLKDKRILLIGGGEVGLTRLYKLM--------------------PTGC-KLTLVSPD 45 (150)
T ss_dssp CCTTCEEEEEEESHHHHHHHHHHG--------------------GGTC-EEEEEEEE
T ss_pred eeCCCEEEEECCCHHHHHHHHHHH--------------------HCCC-EEEEEeCC
Confidence 456899999999999999999776 3454 69999754
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.52 E-value=0.014 Score=50.92 Aligned_cols=36 Identities=25% Similarity=0.391 Sum_probs=29.5
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcc
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGAL 208 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~ 208 (388)
..||+|||+|.+|+-+|..|+ +.|. +|+++++++.+
T Consensus 5 ~~kViVIGaG~aGL~aA~~L~--------------------~~G~-~V~VlEa~~r~ 40 (449)
T d2dw4a2 5 TGKVIIIGSGVSGLAAARQLQ--------------------SFGM-DVTLLEARDRV 40 (449)
T ss_dssp CCEEEEECCBHHHHHHHHHHH--------------------HTTC-EEEEECSSSSS
T ss_pred CCcEEEECCCHHHHHHHHHHH--------------------hCCC-CEEEEeCCCCC
Confidence 568999999999999999886 3554 69999887654
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=94.49 E-value=0.024 Score=43.88 Aligned_cols=37 Identities=19% Similarity=0.179 Sum_probs=30.6
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
.++++|+|||+|..|.++|..|.......+++++|..
T Consensus 3 ~~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~ 39 (146)
T d1ez4a1 3 PNHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVV 39 (146)
T ss_dssp TTBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecc
Confidence 3457999999999999999999994223589999975
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.45 E-value=0.015 Score=47.73 Aligned_cols=33 Identities=21% Similarity=0.212 Sum_probs=30.5
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
+|.|||.|..|+.+|..+++ .|++|+.+|.+..
T Consensus 2 kI~ViGlG~vGl~~a~~la~--~g~~V~g~D~n~~ 34 (202)
T d1mv8a2 2 RISIFGLGYVGAVCAGCLSA--RGHEVIGVDVSST 34 (202)
T ss_dssp EEEEECCSTTHHHHHHHHHH--TTCEEEEECSCHH
T ss_pred EEEEECCCHhHHHHHHHHHh--CCCcEEEEeCCHH
Confidence 69999999999999999999 8999999997644
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=94.42 E-value=0.018 Score=48.29 Aligned_cols=35 Identities=26% Similarity=0.393 Sum_probs=29.1
Q ss_pred CCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecC
Q psy4525 151 DCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRG 206 (388)
Q Consensus 151 ~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~ 206 (388)
..++|+|||+|.+|+-+|..|+ +++. +|+++.|..
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~--------------------~~G~-~V~vier~~ 39 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILA--------------------RKGY-SVHILARDL 39 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHH--------------------HTTC-EEEEEESSC
T ss_pred CCCcEEEECccHHHHHHHHHHH--------------------HCCC-CEEEEeCCC
Confidence 3578999999999999999886 3554 699999864
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=94.26 E-value=0.082 Score=38.55 Aligned_cols=50 Identities=24% Similarity=0.290 Sum_probs=35.6
Q ss_pred CCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcccccCCHHHHHHHhcCCCc
Q psy4525 149 SLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGALQVAFTIKEFREMTKLPHV 226 (388)
Q Consensus 149 ~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~~~~~~~~el~~l~~~~~~ 226 (388)
..++|+|+|||+|.+|..-|..|. +.++ +|+++.... .+++.++.....+
T Consensus 9 ~l~~k~vlVvG~G~va~~ka~~ll--------------------~~ga-~v~v~~~~~-------~~~~~~~~~~~~i 58 (113)
T d1pjqa1 9 QLRDRDCLIVGGGDVAERKARLLL--------------------EAGA-RLTVNALTF-------IPQFTVWANEGML 58 (113)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHH--------------------HTTB-EEEEEESSC-------CHHHHHHHTTTSC
T ss_pred EeCCCEEEEECCCHHHHHHHHHHH--------------------HCCC-eEEEEeccC-------ChHHHHHHhcCCc
Confidence 346899999999999999999776 3554 688876543 2555555554443
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=94.09 E-value=0.017 Score=49.49 Aligned_cols=45 Identities=4% Similarity=-0.127 Sum_probs=30.7
Q ss_pred eEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccC
Q psy4525 272 YFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 272 gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
|+++++++.|++|..++++ +. +... ..++.++++||.||+|+|..
T Consensus 233 g~~i~~~~~V~~I~~~~~~-~~-v~~~-----~~~~~~~~~ad~VV~a~p~~ 277 (347)
T d2ivda1 233 GDAAHVGARVEGLAREDGG-WR-LIIE-----EHGRRAELSVAQVVLAAPAH 277 (347)
T ss_dssp GGGEESSEEEEEEECC--C-CE-EEEE-----ETTEEEEEECSEEEECSCHH
T ss_pred hcccccCCEEEEEEEeCCe-EE-EEEE-----cCCeEEEEECCEEEECCCHH
Confidence 6689999999999875433 32 2221 13455789999999999853
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=94.00 E-value=0.017 Score=46.81 Aligned_cols=35 Identities=20% Similarity=0.169 Sum_probs=31.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
+.+++|+|||+|.-|.+.|..|.+ .|.+|+++.++
T Consensus 5 ~~m~KI~ViGaG~wGtAlA~~La~--~g~~V~l~~r~ 39 (189)
T d1n1ea2 5 LYLNKAVVFGSGAFGTALAMVLSK--KCREVCVWHMN 39 (189)
T ss_dssp CCEEEEEEECCSHHHHHHHHHHHT--TEEEEEEECSC
T ss_pred ceeceEEEECCCHHHHHHHHHHHH--cCCeEEEEEec
Confidence 344689999999999999999999 78999999876
|
| >d2gv8a2 c.3.1.5 (A:181-287) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavin-dependent monoxygenase SPBP16F5.08c species: Schizosaccharomyces pombe [TaxId: 4896]
Probab=93.90 E-value=0.035 Score=40.30 Aligned_cols=35 Identities=11% Similarity=0.056 Sum_probs=29.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
..++|+|||+|.+|+-.|..|.+ ...++++..+.+
T Consensus 31 ~gK~VlVVG~g~Sa~dia~~l~~--~ak~v~~~~~r~ 65 (107)
T d2gv8a2 31 VGESVLVVGGASSANDLVRHLTP--VAKHPIYQSLLG 65 (107)
T ss_dssp TTCCEEEECSSHHHHHHHHHHTT--TSCSSEEEECTT
T ss_pred CCCeEEEECCCCCHHHHHHHHHH--hcCEEEEEEecC
Confidence 46899999999999999999998 666766666553
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=93.89 E-value=0.031 Score=43.94 Aligned_cols=31 Identities=16% Similarity=0.138 Sum_probs=29.3
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
+|.|||.|..|.+.|..|.+ .|++|+++|++
T Consensus 2 kI~iIG~G~mG~~lA~~l~~--~g~~V~~~d~~ 32 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRR--RGHYLIGVSRQ 32 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred EEEEEeecHHHHHHHHHHHH--CCCEEEEEECC
Confidence 69999999999999999999 89999999976
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=93.66 E-value=0.041 Score=42.87 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=29.4
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCC-CcEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQ-STVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g-~~v~lie~~ 47 (388)
+++++|+|||+|..|.++|..|.. .+ .+++++|..
T Consensus 5 ~k~~KI~IIGaG~VG~~lA~~l~~--~~~~el~L~D~~ 40 (154)
T d1pzga1 5 QRRKKVAMIGSGMIGGTMGYLCAL--RELADVVLYDVV 40 (154)
T ss_dssp SCCCEEEEECCSHHHHHHHHHHHH--HTCCEEEEECSS
T ss_pred cCCCcEEEECCCHHHHHHHHHHHh--CCCceEEEEEec
Confidence 456899999999999999988887 44 489999965
|
| >d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.65 E-value=0.022 Score=49.60 Aligned_cols=19 Identities=26% Similarity=0.265 Sum_probs=17.8
Q ss_pred eEEEEcCChHHHHHHHHhc
Q psy4525 154 EATILGQGNVAMDVARILL 172 (388)
Q Consensus 154 ~vvVIGgG~sg~e~a~~L~ 172 (388)
.++|||+|.+|+-+|..|+
T Consensus 3 dv~IIGaG~sGl~~A~~L~ 21 (298)
T d1i8ta1 3 DYIIVGSGLFGAVCANELK 21 (298)
T ss_dssp EEEEECCSHHHHHHHHHHG
T ss_pred cEEEECCcHHHHHHHHHHH
Confidence 5899999999999999887
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.60 E-value=0.02 Score=47.46 Aligned_cols=47 Identities=9% Similarity=0.043 Sum_probs=34.2
Q ss_pred ceeEEEEecCcceeeeeCC-CCceeEEEEccCccccCCceeEEecceEEEccccCCc
Q psy4525 270 SKYFRPIFLRSPTEFKLND-NGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSR 325 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~-~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~ 325 (388)
+.|+++++++.|++|..++ ++++..+. .+++++.||.||+.-.|-|+
T Consensus 248 ~~G~~i~~~~~V~~I~~~~~~~~v~~v~---------~~g~~~~ad~VI~~~s~~~~ 295 (297)
T d2bcgg1 248 IYGGTYMLDTPIDEVLYKKDTGKFEGVK---------TKLGTFKAPLVIADPTYFPE 295 (297)
T ss_dssp HTTCEEECSCCCCEEEEETTTTEEEEEE---------ETTEEEECSCEEECGGGCGG
T ss_pred hcCCEEEeCCEeeEEEEECCCCEEEEEE---------cCCEEEECCEEEEChhhccC
Confidence 4678999999999996543 35665553 34568999999987666554
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.42 E-value=0.048 Score=42.65 Aligned_cols=37 Identities=22% Similarity=0.311 Sum_probs=29.9
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
.++.+|.|||+|..|.++|..|......-++.++|..
T Consensus 17 ~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~ 53 (159)
T d2ldxa1 17 LSRCKITVVGVGDVGMACAISILLKGLADELALVDAD 53 (159)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 4456899999999999999999993222379999965
|
| >d1a9xa3 c.30.1.1 (A:1-127) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=93.36 E-value=0.048 Score=40.70 Aligned_cols=36 Identities=19% Similarity=0.271 Sum_probs=31.4
Q ss_pred CCCcEEEECccH-----------HHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGP-----------AGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~-----------aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
..++|+|||+|| ++..++.+|++ .|++++++..++.
T Consensus 6 ~~kkvlilGsGp~~IGq~~EfDy~~~~a~~alke--~g~~~iliN~NP~ 52 (127)
T d1a9xa3 6 DIKSILILGAGPIVIGQACEFDYSGAQACKALRE--EGYRVINVNSNPA 52 (127)
T ss_dssp SCCEEEEECCCSCBTTBCTHHHHHHHHHHHHHHH--HTCEEEEECSCTT
T ss_pred CCCEEEEECCCcCcccccchhHHHHHHHHHHHHH--cCCeEEEecCchH
Confidence 458999999986 68889999999 8999999998854
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=93.26 E-value=0.049 Score=43.09 Aligned_cols=35 Identities=17% Similarity=0.220 Sum_probs=31.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
...++|+|+|+|-++-+++..|.+ .|.+++|+.|.
T Consensus 16 ~~~k~vlIlGaGGaarai~~al~~--~g~~i~I~nRt 50 (170)
T d1nyta1 16 RPGLRILLIGAGGASRGVLLPLLS--LDCAVTITNRT 50 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSS
T ss_pred CCCCEEEEECCcHHHHHHHHHhcc--cceEEEeccch
Confidence 456899999999999999999999 78899999986
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.26 E-value=0.042 Score=43.35 Aligned_cols=35 Identities=17% Similarity=0.057 Sum_probs=31.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
++..+|+|+|+|+.|+.++..++. .|.+|++++++
T Consensus 26 ~~g~~vlI~GaG~vG~~a~q~ak~--~G~~vi~~~~~ 60 (168)
T d1piwa2 26 GPGKKVGIVGLGGIGSMGTLISKA--MGAETYVISRS 60 (168)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHH--HTCEEEEEESS
T ss_pred CCCCEEEEECCCCcchhHHHHhhh--ccccccccccc
Confidence 456799999999999999988887 79999999976
|
| >d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Rab escort protein 1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.09 E-value=0.052 Score=50.31 Aligned_cols=43 Identities=14% Similarity=0.013 Sum_probs=39.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCcee
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVR 55 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~ 55 (388)
+..+||||+|.|..=.-+|.+|.+ .|.+|+-+|+++..||.|.
T Consensus 4 P~e~DVII~GTGL~ESILAaAlSr--~GkkVLHiD~N~yYGg~~a 46 (491)
T d1vg0a1 4 PSDFDVIVIGTGLPESIIAAACSR--SGQRVLHVDSRSYYGGNWA 46 (491)
T ss_dssp CSBCSEEEECCSHHHHHHHHHHHH--TTCCEEEECSSSSSCGGGC
T ss_pred CCccCEEEECCChHHHHHHHHHHh--cCCEEEEecCCCcCCCccc
Confidence 456899999999999999999999 8999999999999999874
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=92.99 E-value=0.048 Score=42.97 Aligned_cols=34 Identities=26% Similarity=0.311 Sum_probs=28.9
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecC
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRG 206 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~ 206 (388)
.|+|+|||+|.+|.-+|..|+ +.+. +|+++.|+.
T Consensus 2 ~K~IliiGaG~~G~~~a~~L~--------------------~~g~-~V~v~dr~~ 35 (182)
T d1e5qa1 2 TKSVLMLGSGFVTRPTLDVLT--------------------DSGI-KVTVACRTL 35 (182)
T ss_dssp CCEEEEECCSTTHHHHHHHHH--------------------TTTC-EEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHH--------------------hCCC-EEEEEECCh
Confidence 689999999999999999887 3444 699999884
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=92.97 E-value=0.06 Score=42.32 Aligned_cols=35 Identities=23% Similarity=0.296 Sum_probs=31.1
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
+...+|+|+|+|+.|+.++..++. .|.+|+++|++
T Consensus 25 ~~g~~vlV~G~G~vG~~~~~~ak~--~Ga~vi~v~~~ 59 (170)
T d1e3ja2 25 QLGTTVLVIGAGPIGLVSVLAAKA--YGAFVVCTARS 59 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred CCCCEEEEEcccccchhhHhhHhh--hcccccccchH
Confidence 456789999999999999998888 89999999976
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.94 E-value=0.064 Score=41.98 Aligned_cols=35 Identities=20% Similarity=0.058 Sum_probs=30.9
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
++..+|+|+|+|+.|+.++..++. .|.+|+++++.
T Consensus 26 ~~g~~VlV~GaG~vG~~~~~~ak~--~G~~Vi~~~~~ 60 (166)
T d1llua2 26 RPGQWVAISGIGGLGHVAVQYARA--MGLHVAAIDID 60 (166)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESC
T ss_pred CCCCEEEEeeccccHHHHHHHHHH--cCCccceecch
Confidence 456789999999999999998888 79999999876
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=92.91 E-value=0.04 Score=38.82 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=20.9
Q ss_pred CCCCeEEEEcCChHHHHHHHHhc
Q psy4525 150 LDCEEATILGQGNVAMDVARILL 172 (388)
Q Consensus 150 ~~~~~vvVIGgG~sg~e~a~~L~ 172 (388)
+++|+|+|+|.|-||+-+|..|.
T Consensus 3 ~~~K~v~ViGlG~sG~s~a~~L~ 25 (93)
T d2jfga1 3 YQGKNVVIIGLGLTGLSCVDFFL 25 (93)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHH
T ss_pred cCCCEEEEEeECHHHHHHHHHHH
Confidence 46899999999999999999886
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.84 E-value=0.076 Score=40.94 Aligned_cols=37 Identities=11% Similarity=0.135 Sum_probs=30.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
..+++|.|||+|..|.++|..|......-++.++|..
T Consensus 4 ~~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~ 40 (148)
T d1ldna1 4 NGGARVVVIGAGFVGASYVFALMNQGIADEIVLIDAN 40 (148)
T ss_dssp TTSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeec
Confidence 3467999999999999999999994333479999965
|
| >d1a9xa4 c.30.1.1 (A:556-676) Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Carbamoyl phosphate synthetase (CPS), large subunit PreATP-grasp domains species: Escherichia coli [TaxId: 562]
Probab=92.80 E-value=0.092 Score=38.63 Aligned_cols=36 Identities=8% Similarity=0.088 Sum_probs=31.4
Q ss_pred CCCcEEEECcc-----------HHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSG-----------PAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG-----------~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
..++|+|||+| +++..|+.+|++ .|++++++..++.
T Consensus 3 ~~kkvlViGsGp~rIGq~~EfDy~~~~a~~aLk~--~g~~~IliN~NPe 49 (121)
T d1a9xa4 3 DREKIMVLGGGPNRIGQGIEFDYCCVHASLALRE--DGYETIMVNCNPE 49 (121)
T ss_dssp SSCEEEEECCCSCBTTBCHHHHHHHHHHHHHHHH--TTCEEEEECCCTT
T ss_pred CCCEEEEECCCcCcccccchhhHHHHHHHHHHHh--cCCeEEEEecChh
Confidence 45799999998 468899999999 9999999998865
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.63 E-value=0.075 Score=41.87 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=30.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~ 47 (388)
++...|+|+|+|+.|+.++..++. .|. +|+++|++
T Consensus 25 ~~gd~VlI~G~G~iG~~~~~~a~~--~G~~~Vi~~d~~ 60 (171)
T d1pl8a2 25 TLGHKVLVCGAGPIGMVTLLVAKA--MGAAQVVVTDLS 60 (171)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEEESC
T ss_pred CCCCEEEEECCCccHHHHHHHHHH--cCCceEEeccCC
Confidence 455789999999999999999988 787 68888866
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=92.48 E-value=0.077 Score=40.82 Aligned_cols=34 Identities=15% Similarity=0.163 Sum_probs=28.2
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
++|.|||+|..|.++|..|.......+++++|..
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~ 35 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDAN 35 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecc
Confidence 6899999999999999999984223479999865
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=92.46 E-value=0.05 Score=43.50 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=28.9
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
++|.|||+|.-|.+.|..|.+ .|.+|+++.|.
T Consensus 1 MkI~ViGaG~~GtalA~~la~--~g~~V~l~~r~ 32 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVD--NGNEVRIWGTE 32 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHH--HCCEEEEECCG
T ss_pred CEEEEECCCHHHHHHHHHHHH--CCCEEEEEEec
Confidence 379999999999999999999 78999998764
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=92.40 E-value=0.11 Score=37.91 Aligned_cols=36 Identities=19% Similarity=0.173 Sum_probs=32.4
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
...+|.|||||--|...|....+ .|+++.++|..+.
T Consensus 10 ~~~kigIlGgGQL~rMla~aA~~--lG~~v~v~d~~~~ 45 (111)
T d1kjqa2 10 AATRVMLLGSGELGKEVAIECQR--LGVEVIAVDRYAD 45 (111)
T ss_dssp TCCEEEEESCSHHHHHHHHHHHT--TTCEEEEEESSTT
T ss_pred CCCEEEEEeCCHHHHHHHHHHHH--CCCEEEEEcCCCC
Confidence 35689999999999999999999 8999999998754
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=92.39 E-value=0.085 Score=40.32 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=28.5
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
++|.|||+|..|.++|..+..+...-++.++|...
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~ 36 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFK 36 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC-
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccC
Confidence 58999999999999999999932233799999763
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=92.23 E-value=0.07 Score=40.84 Aligned_cols=34 Identities=15% Similarity=0.285 Sum_probs=28.0
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
+++|.|||+|..|.++|..|... .-.++.++|..
T Consensus 1 r~KI~IIGaG~VG~~~A~~l~~~-~l~dl~l~D~~ 34 (142)
T d1uxja1 1 RKKISIIGAGFVGSTTAHWLAAK-ELGDIVLLDIV 34 (142)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-TCSEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHhC-CcceEEEEeec
Confidence 36899999999999999999884 22489999865
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=92.13 E-value=0.13 Score=40.02 Aligned_cols=35 Identities=26% Similarity=0.466 Sum_probs=30.4
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCC--cEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQS--TVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~--~v~lie~~ 47 (388)
.+.++|.|||+|..|.++|..|.. .+. ++.++|..
T Consensus 18 ~~~~KV~IIGaG~VG~~~A~~l~~--~~l~~ElvLiD~~ 54 (160)
T d1i0za1 18 VPNNKITVVGVGQVGMACAISILG--KSLADELALVDVL 54 (160)
T ss_dssp CCSSEEEEECCSHHHHHHHHHHHH--TTCCSEEEEECSC
T ss_pred CCCCeEEEECCCHHHHHHHHHHHh--cCCCcEEEEEEec
Confidence 345799999999999999999999 564 79999975
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=91.91 E-value=0.1 Score=39.86 Aligned_cols=35 Identities=11% Similarity=0.126 Sum_probs=28.5
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
+.+|+|||+|..|.++|..+..+...-++.++|..
T Consensus 1 p~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~ 35 (143)
T d1llda1 1 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIA 35 (143)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEec
Confidence 36899999999999999999983223479999965
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=91.89 E-value=0.063 Score=43.38 Aligned_cols=45 Identities=24% Similarity=0.389 Sum_probs=32.7
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCCCCCceeeCCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPVPFGLVRYGVAPD 61 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~~gg~~~~g~~p~ 61 (388)
++|+|||.|..|+.+|..++ .|++|+.+|-++..-..++.|..|.
T Consensus 1 MkI~ViGlG~vGl~~a~~~a---~g~~V~g~Din~~~v~~l~~g~~p~ 45 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLLS---LQNEVTIVDILPSKVDKINNGLSPI 45 (196)
T ss_dssp CEEEEECCSHHHHHHHHHHT---TTSEEEEECSCHHHHHHHHTTCCSS
T ss_pred CEEEEECCChhHHHHHHHHH---CCCcEEEEECCHHHHHHHhhccccc
Confidence 37999999999999998774 4899999997754322334444343
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=91.68 E-value=0.072 Score=42.46 Aligned_cols=35 Identities=20% Similarity=0.232 Sum_probs=30.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~ 47 (388)
+...+|+|+|+|+.|+.++..++. .|. +|+++|++
T Consensus 27 ~~G~~VlV~GaG~iG~~~~~~ak~--~Ga~~Vi~~~~~ 62 (182)
T d1vj0a2 27 FAGKTVVIQGAGPLGLFGVVIARS--LGAENVIVIAGS 62 (182)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHH--TTBSEEEEEESC
T ss_pred CCCCEEEEECCCccchhheecccc--cccccccccccc
Confidence 456899999999999999999988 787 68999876
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=91.65 E-value=0.1 Score=40.93 Aligned_cols=35 Identities=17% Similarity=0.123 Sum_probs=30.9
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
++..+|+|+|+|+.|+.++..++. .|.++++++..
T Consensus 29 ~~G~~VlI~GaG~vG~~a~qlak~--~Ga~~i~~~~~ 63 (168)
T d1uufa2 29 GPGKKVGVVGIGGLGHMGIKLAHA--MGAHVVAFTTS 63 (168)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEEESS
T ss_pred CCCCEEEEeccchHHHHHHHHhhc--ccccchhhccc
Confidence 456799999999999999999888 89999988865
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=91.63 E-value=0.39 Score=36.55 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=27.1
Q ss_pred cEEEECc-cHHHHHHHHHHHhhCCC--CcEEEEcCC
Q psy4525 15 NVCIVGS-GPAGFYCAQQILKLLPQ--STVDIYEKL 47 (388)
Q Consensus 15 ~vvIIGa-G~aGl~aA~~l~~~~~g--~~v~lie~~ 47 (388)
+|.|||+ |..|.++|..|.. .+ .++.++|..
T Consensus 2 KV~IiGA~G~VG~~~a~~l~~--~~l~~el~L~D~~ 35 (145)
T d1hyea1 2 KVTIIGASGRVGSATALLLAK--EPFMKDLVLIGRE 35 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHT--CTTCCEEEEEECG
T ss_pred EEEEECCCChHHHHHHHHHHh--CCcccccccccch
Confidence 6999996 9999999999998 55 489999965
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=91.49 E-value=0.046 Score=40.98 Aligned_cols=45 Identities=24% Similarity=0.188 Sum_probs=33.3
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcE-EEEcCCCCCCCceeeCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTV-DIYEKLPVPFGLVRYGV 58 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v-~lie~~~~~gg~~~~g~ 58 (388)
+.+|+|+|||-+|.+++.++... .++++ -+||..+..-|....|+
T Consensus 3 ~~~v~I~GaG~~G~~l~~~l~~~-~~~~iv~fiDdd~~k~G~~I~Gi 48 (126)
T d2dt5a2 3 KWGLCIVGMGRLGSALADYPGFG-ESFELRGFFDVDPEKVGRPVRGG 48 (126)
T ss_dssp CEEEEEECCSHHHHHHHHCSCCC-SSEEEEEEEESCTTTTTCEETTE
T ss_pred CceEEEEcCCHHHHHHHHhHhhc-CCcEEEEEEeCchHhcCCEECCE
Confidence 46999999999999998877653 56765 46787776655555554
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=91.41 E-value=0.086 Score=35.68 Aligned_cols=34 Identities=21% Similarity=0.098 Sum_probs=31.1
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
++|.|||+|--|...+....+ .|+++.+++..+.
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~--LG~~v~vldp~~~ 35 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEP--LGIAVWPVGLDAE 35 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGG--GTEEEEEECTTSC
T ss_pred CEEEEEcCCHHHHHHHHHHHH--cCCEEEEEcCCCC
Confidence 689999999999999999999 8999999997644
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=91.34 E-value=0.095 Score=41.56 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=28.9
Q ss_pred cEEEE-CccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 15 NVCIV-GSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 15 ~vvII-GaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
+|+|| |+|.-|.+.|..|.+ .|++|++.+|+
T Consensus 2 ki~vigGaG~iG~alA~~la~--~G~~V~l~~R~ 33 (212)
T d1jaya_ 2 RVALLGGTGNLGKGLALRLAT--LGHEIVVGSRR 33 (212)
T ss_dssp EEEEETTTSHHHHHHHHHHHT--TTCEEEEEESS
T ss_pred EEEEEeCCcHHHHHHHHHHHH--CCCEEEEEECC
Confidence 68999 679999999999999 99999999987
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.30 E-value=0.11 Score=41.99 Aligned_cols=35 Identities=17% Similarity=0.294 Sum_probs=31.3
Q ss_pred CCCcEEEECc-cHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 12 LKPNVCIVGS-GPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGa-G~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
..++|+|+|| |..|-.++..|.+ .|++|+++.|++
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~--~g~~V~~~~R~~ 37 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQ--AGYEVTVLVRDS 37 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHH--TTCEEEEEESCG
T ss_pred CCCEEEEECCCCHHHHHHHHHHHH--CcCEEEEEEcCh
Confidence 4578999995 9999999999999 899999999873
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=91.28 E-value=0.11 Score=40.84 Aligned_cols=34 Identities=18% Similarity=0.210 Sum_probs=30.3
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~ 47 (388)
..++|+|+|+|-++-+++..|.+ .|. +++|+.|+
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~--~g~~~I~I~nR~ 50 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKN--SGFEKLKIYARN 50 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHH--TTCCCEEEECSC
T ss_pred CCCeEEEECCCHHHHHHHHHHHH--CCCCEEEEeccc
Confidence 45789999999999999999999 786 79999886
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.22 E-value=0.057 Score=47.17 Aligned_cols=43 Identities=12% Similarity=-0.001 Sum_probs=31.7
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEcccc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGY 322 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~ 322 (388)
..|..+++++.+++|..++ +.+. ++ +.+++++.||.||+|+..
T Consensus 219 ~~g~~i~~~~~v~~I~~~~-~~v~-v~--------~~~g~~~~ad~vI~a~p~ 261 (383)
T d2v5za1 219 LLGDRVKLERPVIYIDQTR-ENVL-VE--------TLNHEMYEAKYVISAIPP 261 (383)
T ss_dssp HHGGGEEESCCEEEEECSS-SSEE-EE--------ETTSCEEEESEEEECSCG
T ss_pred HcCCeEEecCcceEEEecC-CeEE-EE--------ECCCCEEECCEEEECCCH
Confidence 4578899999999997643 3432 43 456678999999999864
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=91.14 E-value=0.14 Score=40.39 Aligned_cols=35 Identities=11% Similarity=0.148 Sum_probs=30.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~ 47 (388)
++..+|+|+|+|+.|+.++..++. .|. +|+++|.+
T Consensus 26 ~~g~~VlI~GaG~vGl~~~q~ak~--~Ga~~Vi~~d~~ 61 (174)
T d1jqba2 26 EMGSSVVVIGIGAVGLMGIAGAKL--RGAGRIIGVGSR 61 (174)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHT--TTCSCEEEECCC
T ss_pred CCCCEEEEEcCCcchhhhhhhhhc--ccccccccccch
Confidence 456789999999999999999998 786 68889865
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=91.14 E-value=0.15 Score=39.14 Aligned_cols=32 Identities=13% Similarity=0.173 Sum_probs=29.7
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
-.++|+|.|..|..++..|.+ .+.+++++|..
T Consensus 4 nHiII~G~g~~g~~l~~~L~~--~~~~v~vId~d 35 (153)
T d1id1a_ 4 DHFIVCGHSILAINTILQLNQ--RGQNVTVISNL 35 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHH--TTCCEEEEECC
T ss_pred CEEEEECCCHHHHHHHHHHHH--cCCCEEEEecc
Confidence 469999999999999999999 89999999976
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.01 E-value=0.14 Score=40.08 Aligned_cols=32 Identities=28% Similarity=0.258 Sum_probs=27.7
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCC--cEEEEcCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQS--TVDIYEKL 47 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~--~v~lie~~ 47 (388)
++|.|||.|..|.+.|..|.+ .+. +|+.+|++
T Consensus 2 k~I~IIG~G~mG~sla~~L~~--~g~~~~I~~~D~~ 35 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRR--SGFKGKIYGYDIN 35 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHH--TTCCSEEEEECSC
T ss_pred CEEEEEccCHHHHHHHHHHHh--cCCCeEEEEEECC
Confidence 579999999999999999999 564 67788876
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=90.95 E-value=0.14 Score=40.55 Aligned_cols=34 Identities=9% Similarity=0.154 Sum_probs=31.3
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
..+|-|||-|..|...|..|.+ .|++|+++|+.+
T Consensus 2 ~~nIg~IGlG~MG~~mA~~L~~--~G~~V~v~dr~~ 35 (176)
T d2pgda2 2 QADIALIGLAVMGQNLILNMND--HGFVVCAFNRTV 35 (176)
T ss_dssp CBSEEEECCSHHHHHHHHHHHH--TTCCEEEECSST
T ss_pred CCcEEEEeEhHHHHHHHHHHHH--CCCeEEEEcCCH
Confidence 3589999999999999999999 899999999873
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=90.68 E-value=0.12 Score=40.33 Aligned_cols=36 Identities=22% Similarity=0.427 Sum_probs=30.7
Q ss_pred CCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeec
Q psy4525 150 LDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRR 205 (388)
Q Consensus 150 ~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~ 205 (388)
..+++++|||+|.+|..++..|. ..+.++++++.|+
T Consensus 22 l~~~~ilviGaG~~g~~v~~~L~--------------------~~g~~~i~v~nRt 57 (159)
T d1gpja2 22 LHDKTVLVVGAGEMGKTVAKSLV--------------------DRGVRAVLVANRT 57 (159)
T ss_dssp CTTCEEEEESCCHHHHHHHHHHH--------------------HHCCSEEEEECSS
T ss_pred cccCeEEEECCCHHHHHHHHHHH--------------------hcCCcEEEEEcCc
Confidence 45799999999999999999775 3567789999987
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=90.42 E-value=0.18 Score=38.34 Aligned_cols=33 Identities=12% Similarity=0.275 Sum_probs=27.5
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
+|+|||+|..|.++|..|......-+++++|..
T Consensus 2 KI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~ 34 (142)
T d1guza1 2 KITVIGAGNVGATTAFRLAEKQLARELVLLDVV 34 (142)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCCSEEEEECSS
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCceEEEeccc
Confidence 799999999999999999983222489999966
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=90.16 E-value=0.11 Score=40.95 Aligned_cols=34 Identities=24% Similarity=0.175 Sum_probs=28.0
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecC
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRG 206 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~ 206 (388)
.|+++|||+|..|.-+|..|+ +.| .+|+++.|.+
T Consensus 1 sk~iaIiGaG~~G~~~A~~l~--------------------~~G-~~V~~~~r~~ 34 (184)
T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLA--------------------LKG-QSVLAWDIDA 34 (184)
T ss_dssp CCEEEEECCSHHHHHHHHHHH--------------------HTT-CEEEEECSCH
T ss_pred CCEEEEECccHHHHHHHHHHH--------------------HCC-CEEEEEECCH
Confidence 378999999999999999887 344 4799988864
|
| >d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Sarcosine oxidase species: Bacillus sp., strain b0618 [TaxId: 1409]
Probab=90.06 E-value=0.12 Score=43.81 Aligned_cols=47 Identities=11% Similarity=0.110 Sum_probs=33.8
Q ss_pred CceeEEEEecCcceeeeeCCCCceeEEEEccCccccCCceeEEecceEEEccccCCcc
Q psy4525 269 CSKYFRPIFLRSPTEFKLNDNGAITGINFANQQALVTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 269 ~~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
.+.|+++++++.++++..++ +.+ .|+ +.++ ++.||.||+|+|.-.+.
T Consensus 161 ~~~Gv~i~~~~~V~~i~~~~-~~v-~V~--------t~~g-~i~a~~VViAaG~~s~~ 207 (281)
T d2gf3a1 161 EARGAKVLTHTRVEDFDISP-DSV-KIE--------TANG-SYTADKLIVSMGAWNSK 207 (281)
T ss_dssp HHTTCEEECSCCEEEEEECS-SCE-EEE--------ETTE-EEEEEEEEECCGGGHHH
T ss_pred ccccccccCCcEEEEEEEEC-CEE-EEE--------ECCc-EEEcCEEEECCCCcchh
Confidence 35788999999999998754 333 232 3444 59999999999965443
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=90.04 E-value=0.21 Score=38.36 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=27.5
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCC-CcEEEEcCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQ-STVDIYEKL 47 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g-~~v~lie~~ 47 (388)
+.+|.|||+|..|.++|..|.. .+ .++.++|..
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~--~~l~el~L~Di~ 36 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQ--KNLGDVVLFDIV 36 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH--TTCCEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHHh--CCCCeEEEEecc
Confidence 4689999999999999988887 33 378899965
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=89.94 E-value=0.13 Score=40.66 Aligned_cols=35 Identities=20% Similarity=0.264 Sum_probs=31.2
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
...++|+|+|+|-++-+++..|.+ .+.+++|+.|.
T Consensus 16 ~~~k~vlIlGaGGaarai~~aL~~--~~~~i~I~nR~ 50 (171)
T d1p77a1 16 RPNQHVLILGAGGATKGVLLPLLQ--AQQNIVLANRT 50 (171)
T ss_dssp CTTCEEEEECCSHHHHTTHHHHHH--TTCEEEEEESS
T ss_pred CCCCEEEEECCcHHHHHHHHHHcc--cCceeeeccch
Confidence 456899999999999999999988 67899999987
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.90 E-value=0.14 Score=39.87 Aligned_cols=32 Identities=19% Similarity=0.430 Sum_probs=30.2
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
++|.+||-|-.|...|..|.+ .|++|.++|+.
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~--~g~~v~~~d~~ 33 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLK--AGYLLNVFDLV 33 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHH--TTCEEEEECSS
T ss_pred CEEEEEEEHHHHHHHHHHHHH--CCCeEEEEECc
Confidence 579999999999999999999 89999999976
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=89.82 E-value=0.19 Score=39.59 Aligned_cols=35 Identities=9% Similarity=0.048 Sum_probs=29.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCc-EEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQST-VDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~-v~lie~~ 47 (388)
+....|+|+|+|+.|+.++..++. .|.+ |++.|.+
T Consensus 27 ~~G~~VlV~G~G~iGl~a~~~ak~--~Ga~~Vi~~d~~ 62 (174)
T d1e3ia2 27 TPGSTCAVFGLGCVGLSAIIGCKI--AGASRIIAIDIN 62 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEECSC
T ss_pred CCCCEEEEECCChHHHHHHHHHHH--hCCceeeeeccc
Confidence 455789999999999999999999 8875 6667755
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.79 E-value=0.16 Score=39.49 Aligned_cols=35 Identities=20% Similarity=0.030 Sum_probs=30.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
++..+|+|+|+|+.|+.++..++. .|.+|++++.+
T Consensus 26 ~~g~~vlv~G~G~iG~~a~~~a~~--~g~~v~~~~~~ 60 (168)
T d1rjwa2 26 KPGEWVAIYGIGGLGHVAVQYAKA--MGLNVVAVDIG 60 (168)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHH--TTCEEEEECSC
T ss_pred CCCCEEEEeecccchhhhhHHHhc--CCCeEeccCCC
Confidence 456789999999999999888888 88999998865
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=89.76 E-value=0.16 Score=42.94 Aligned_cols=36 Identities=14% Similarity=0.188 Sum_probs=32.3
Q ss_pred CCCcEEEECc-cHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGS-GPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGa-G~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
++++|+|+|| |..|-.++..|.+ .|.+|++++|.+.
T Consensus 2 ~kkKILVtGatG~iG~~l~~~L~~--~G~~V~~l~R~~~ 38 (307)
T d1qyca_ 2 SRSRILLIGATGYIGRHVAKASLD--LGHPTFLLVREST 38 (307)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHH--TTCCEEEECCCCC
T ss_pred CCCEEEEECCCcHHHHHHHHHHHH--CCCeEEEEECCCc
Confidence 4689999998 9999999999999 8999999998743
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=89.41 E-value=0.16 Score=39.53 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=29.4
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
+|.|||.|..|...|..|.+ .|++|+++|+.
T Consensus 2 kIgiIGlG~MG~~~A~~L~~--~G~~V~~~d~~ 32 (161)
T d1vpda2 2 KVGFIGLGIMGKPMSKNLLK--AGYSLVVSDRN 32 (161)
T ss_dssp EEEEECCSTTHHHHHHHHHH--TTCEEEEECSC
T ss_pred EEEEEehhHHHHHHHHHHHH--CCCeEEEEeCC
Confidence 69999999999999999999 89999999986
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=89.40 E-value=0.21 Score=39.47 Aligned_cols=35 Identities=11% Similarity=0.056 Sum_probs=30.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCC-CcEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQ-STVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g-~~v~lie~~ 47 (388)
+....|+|+|+|+.|+.++..++. .| .+|+++|..
T Consensus 28 ~~g~tVlI~G~GgvGl~ai~~ak~--~G~~~Vi~vd~~ 63 (176)
T d1d1ta2 28 KPGSTCVVFGLGGVGLSVIMGCKS--AGASRIIGIDLN 63 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEECSC
T ss_pred CCCCEEEEECCCchhHHHHHHHHH--cCCceEEEecCc
Confidence 456789999999999999999998 78 579999976
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=89.10 E-value=0.19 Score=39.05 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=30.5
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~ 47 (388)
...++|+|||+|..|-..+..|.. .|. +++++.|.
T Consensus 22 l~~~~ilviGaG~~g~~v~~~L~~--~g~~~i~v~nRt 57 (159)
T d1gpja2 22 LHDKTVLVVGAGEMGKTVAKSLVD--RGVRAVLVANRT 57 (159)
T ss_dssp CTTCEEEEESCCHHHHHHHHHHHH--HCCSEEEEECSS
T ss_pred cccCeEEEECCCHHHHHHHHHHHh--cCCcEEEEEcCc
Confidence 356899999999999999999999 787 58888875
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=89.00 E-value=0.25 Score=39.17 Aligned_cols=35 Identities=11% Similarity=0.149 Sum_probs=30.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~ 47 (388)
...++|+|||+|-+|-+++..|.+ .+. ++++++|.
T Consensus 16 l~~k~vlIlGaGGaarai~~al~~--~g~~~i~i~nR~ 51 (182)
T d1vi2a1 16 IKGKTMVLLGAGGASTAIGAQGAI--EGLKEIKLFNRR 51 (182)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEEECS
T ss_pred cCCCEEEEECCcHHHHHHHHHHhh--cCCceEeeeccc
Confidence 346899999999999999999999 665 68899987
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=88.97 E-value=0.26 Score=37.35 Aligned_cols=33 Identities=21% Similarity=0.133 Sum_probs=27.7
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
+|.|||+|-.|.++|..+..+....++.++|..
T Consensus 2 KI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~ 34 (140)
T d1a5za1 2 KIGIVGLGRVGSSTAFALLMKGFAREMVLIDVD 34 (140)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCCSEEEEECSS
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCCEEEEEecc
Confidence 799999999999999999885333589999965
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.86 E-value=0.22 Score=38.72 Aligned_cols=35 Identities=26% Similarity=0.169 Sum_probs=32.6
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
-..|+++|||-|..|-.+|..++. .|.+|+++|..
T Consensus 22 l~Gk~v~V~GyG~iG~g~A~~~rg--~G~~V~v~e~d 56 (163)
T d1li4a1 22 IAGKVAVVAGYGDVGKGCAQALRG--FGARVIITEID 56 (163)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH--TTCEEEEECSC
T ss_pred ecCCEEEEeccccccHHHHHHHHh--CCCeeEeeecc
Confidence 457899999999999999999999 89999999976
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=88.76 E-value=0.26 Score=39.58 Aligned_cols=35 Identities=20% Similarity=0.220 Sum_probs=28.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~ 47 (388)
+...+|+|+|+|+.|+.++..++. .+. +|+++|..
T Consensus 24 ~~G~tVlV~GaG~vGl~a~~~ak~--~ga~~Vi~~d~~ 59 (195)
T d1kola2 24 GPGSTVYVAGAGPVGLAAAASARL--LGAAVVIVGDLN 59 (195)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEEESC
T ss_pred CCCCEEEEECcCHHHHHHHHHHHh--hcccceeeeccc
Confidence 456799999999999999988877 565 67888855
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=88.73 E-value=0.2 Score=39.55 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=28.9
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
..++|+|||+|-++-+++..|.+ .+ +++|+.|.
T Consensus 17 ~~k~vlIlGaGG~arai~~aL~~--~~-~i~I~nR~ 49 (177)
T d1nvta1 17 KDKNIVIYGAGGAARAVAFELAK--DN-NIIIANRT 49 (177)
T ss_dssp CSCEEEEECCSHHHHHHHHHHTS--SS-EEEEECSS
T ss_pred CCCEEEEECCcHHHHHHHHHHcc--cc-ceeeehhh
Confidence 56899999999999999999877 55 89999886
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=88.68 E-value=0.22 Score=38.11 Aligned_cols=31 Identities=16% Similarity=0.047 Sum_probs=28.9
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
+|.|||.|-.|...|..|.+ .|++++++++.
T Consensus 2 kIgiIG~G~mG~~ia~~l~~--~g~~v~~~~~~ 32 (152)
T d1i36a2 2 RVGFIGFGEVAQTLASRLRS--RGVEVVTSLEG 32 (152)
T ss_dssp EEEEESCSHHHHHHHHHHHH--TTCEEEECCTT
T ss_pred EEEEEcHHHHHHHHHHHHHH--CCCeEEEEcCc
Confidence 69999999999999999999 89999998865
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=88.13 E-value=0.26 Score=41.98 Aligned_cols=35 Identities=20% Similarity=0.152 Sum_probs=31.1
Q ss_pred CCCcEEEECc-cHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 12 LKPNVCIVGS-GPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGa-G~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
++.+|+|+|| |..|...+..|.+ .|++|+++.|..
T Consensus 2 ~k~KILVtGatG~iG~~l~~~L~~--~G~~V~~~~R~~ 37 (312)
T d1qyda_ 2 KKSRVLIVGGTGYIGKRIVNASIS--LGHPTYVLFRPE 37 (312)
T ss_dssp CCCCEEEESTTSTTHHHHHHHHHH--TTCCEEEECCSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHh--CCCEEEEEECCC
Confidence 3567999997 9999999999999 899999998863
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=87.75 E-value=0.29 Score=38.44 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=29.8
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
.+|-|||.|..|...|..|.+ .|++|.++|+.
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~--~G~~V~~~dr~ 33 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAE--KGFKVAVFNRT 33 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHH--TTCCEEEECSS
T ss_pred CEEEEEeehHHHHHHHHHHHH--CCCeEEEEECC
Confidence 369999999999999999999 89999999976
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=87.48 E-value=0.36 Score=36.59 Aligned_cols=34 Identities=21% Similarity=0.216 Sum_probs=27.5
Q ss_pred CcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 14 PNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 14 ~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
.+|.|||+|-.|.++|..+.....--++.++|..
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~ 34 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIA 34 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecc
Confidence 3799999999999999999984222479999965
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=87.41 E-value=0.23 Score=38.36 Aligned_cols=33 Identities=21% Similarity=0.095 Sum_probs=27.3
Q ss_pred eEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCc
Q psy4525 154 EATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGA 207 (388)
Q Consensus 154 ~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~ 207 (388)
||+|||+|.+|.-+|..|+ +.| .+|+++.|...
T Consensus 2 kI~IiGaG~iG~~~a~~L~--------------------~~G-~~V~~~~r~~~ 34 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALC--------------------KQG-HEVQGWLRVPQ 34 (167)
T ss_dssp EEEEECCSHHHHHHHHHHH--------------------HTT-CEEEEECSSCC
T ss_pred EEEEECcCHHHHHHHHHHH--------------------HCC-CceEEEEcCHH
Confidence 6999999999999999886 234 47999988764
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=86.96 E-value=0.26 Score=37.54 Aligned_cols=31 Identities=16% Similarity=0.324 Sum_probs=26.4
Q ss_pred cEEEECc-cHHHHHHHHHHHhhCCCC--cEEEEcCC
Q psy4525 15 NVCIVGS-GPAGFYCAQQILKLLPQS--TVDIYEKL 47 (388)
Q Consensus 15 ~vvIIGa-G~aGl~aA~~l~~~~~g~--~v~lie~~ 47 (388)
+|+|||| |..|.++|..|.. .+. +++++|..
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~--~~~~~elvLiDi~ 35 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKN--SPLVSRLTLYDIA 35 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHT--CTTCSEEEEEESS
T ss_pred eEEEECCCChHHHHHHHHHHh--CCccceEEEEecc
Confidence 7999996 9999999999998 554 68899854
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=86.83 E-value=0.45 Score=37.56 Aligned_cols=38 Identities=18% Similarity=0.360 Sum_probs=31.0
Q ss_pred CCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecC
Q psy4525 149 SLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRG 206 (388)
Q Consensus 149 ~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~ 206 (388)
..++++|+|+|+|-+|--++..|. +.+.++++++.|+.
T Consensus 15 ~l~~k~vlIlGaGGaarai~~al~--------------------~~g~~~i~i~nR~~ 52 (182)
T d1vi2a1 15 DIKGKTMVLLGAGGASTAIGAQGA--------------------IEGLKEIKLFNRRD 52 (182)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHH--------------------HTTCSEEEEEECSS
T ss_pred CcCCCEEEEECCcHHHHHHHHHHh--------------------hcCCceEeeeccch
Confidence 346899999999999887777665 46788999999874
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=86.21 E-value=0.34 Score=38.00 Aligned_cols=35 Identities=11% Similarity=0.073 Sum_probs=29.6
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~ 47 (388)
++...|+|+|+|+.|+.++..++. .|. +|+++|.+
T Consensus 26 ~~G~~VlV~GaGgvGl~a~~~ak~--~G~~~Vi~~d~~ 61 (174)
T d1p0fa2 26 TPGSTCAVFGLGGVGFSAIVGCKA--AGASRIIGVGTH 61 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH--HTCSEEEEECSC
T ss_pred CCCCEEEEECCCchhHHHHHHHHH--cCCceeeccCCh
Confidence 556789999999999999999998 675 67788765
|
| >d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Phenol hydroxylase species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]
Probab=86.19 E-value=0.32 Score=42.26 Aligned_cols=39 Identities=21% Similarity=0.385 Sum_probs=28.8
Q ss_pred eEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcc
Q psy4525 154 EATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGAL 208 (388)
Q Consensus 154 ~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~ 208 (388)
.|+|||||.+|+-+|..|++ ..+.+.|. +|+++.|++..
T Consensus 9 DV~IvGaG~aGl~lA~~La~---------------~~~~~~G~-~v~vlEr~~~~ 47 (360)
T d1pn0a1 9 DVLIVGAGPAGLMAARVLSE---------------YVRQKPDL-KVRIIDKRSTK 47 (360)
T ss_dssp EEEEECCSHHHHHHHHHHHH---------------HHHHSTTC-CEEEECSSSSC
T ss_pred CEEEECcCHHHHHHHHHHHh---------------cccccCCC-cEEEEcCCCCC
Confidence 59999999999999998861 00123455 59999987644
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=86.05 E-value=0.26 Score=39.43 Aligned_cols=33 Identities=18% Similarity=0.322 Sum_probs=27.0
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecC
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRG 206 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~ 206 (388)
++|+|||+|..|.-+|..|+ ....+|++..|.+
T Consensus 8 ~KI~ViGaG~wGtAlA~~La---------------------~~g~~V~l~~r~~ 40 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLS---------------------KKCREVCVWHMNE 40 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHH---------------------TTEEEEEEECSCH
T ss_pred ceEEEECCCHHHHHHHHHHH---------------------HcCCeEEEEEecH
Confidence 57999999999999999886 3335799988763
|
| >d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO species: Pig (Sus scrofa) [TaxId: 9823]
Probab=86.01 E-value=0.4 Score=42.82 Aligned_cols=57 Identities=11% Similarity=0.086 Sum_probs=34.8
Q ss_pred ceeEEEEecCcceeeeeCCCCceeEEEEccCccc-------cCCceeEEecceEEEccccCCcc
Q psy4525 270 SKYFRPIFLRSPTEFKLNDNGAITGINFANQQAL-------VTEDTELIPSGIAFRSIGYQSRC 326 (388)
Q Consensus 270 ~~gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~~~-------~~~~~~~l~~D~Vi~a~G~~p~~ 326 (388)
..++.+.....+.++..++.+.+..+........ ........-++..+++.|.+...
T Consensus 153 ~~g~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~G~~G~l 216 (380)
T d2gmha1 153 ALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHAKVTIFAEGCHGHL 216 (380)
T ss_dssp HTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEECSEEEECCCTTCHH
T ss_pred hccceeeeecceeeeeeccCCceeecccccccccccccccccccccccccccEEEEeeeCCCcc
Confidence 4677888888888888766676666554311000 00112345678888999877543
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=85.84 E-value=0.4 Score=37.53 Aligned_cols=35 Identities=9% Similarity=0.079 Sum_probs=27.9
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEE-EEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVD-IYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~-lie~~ 47 (388)
++..+|+|+|+|+.|+.++..++. .|.+++ +.+.+
T Consensus 27 ~~g~~VlI~G~G~iG~~~~~~ak~--~g~~~v~~~~~~ 62 (174)
T d1f8fa2 27 TPASSFVTWGAGAVGLSALLAAKV--CGASIIIAVDIV 62 (174)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHH--HTCSEEEEEESC
T ss_pred CCCCEEEEeCCCHHHhhhhhcccc--cccceeeeeccH
Confidence 456789999999999999999988 677654 55644
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=85.64 E-value=0.33 Score=37.57 Aligned_cols=35 Identities=29% Similarity=0.195 Sum_probs=32.7
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
-..|+++|+|=|..|-.+|..++. .|.+|++.|..
T Consensus 21 laGk~vvV~GYG~vGrG~A~~~rg--~Ga~V~V~E~D 55 (163)
T d1v8ba1 21 ISGKIVVICGYGDVGKGCASSMKG--LGARVYITEID 55 (163)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHH--HTCEEEEECSC
T ss_pred ecCCEEEEecccccchhHHHHHHh--CCCEEEEEecC
Confidence 457899999999999999999999 89999999977
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=85.62 E-value=0.31 Score=38.02 Aligned_cols=35 Identities=17% Similarity=0.311 Sum_probs=29.6
Q ss_pred CCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeec
Q psy4525 151 DCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRR 205 (388)
Q Consensus 151 ~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~ 205 (388)
++++|+|+|+|-+|--++..|. +.+.++|+++.|+
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~--------------------~~g~~~I~I~nR~ 50 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFK--------------------NSGFEKLKIYARN 50 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHH--------------------HTTCCCEEEECSC
T ss_pred CCCeEEEECCCHHHHHHHHHHH--------------------HCCCCEEEEeccc
Confidence 4789999999999988888665 4677889999887
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.56 E-value=0.31 Score=39.04 Aligned_cols=33 Identities=21% Similarity=0.414 Sum_probs=27.2
Q ss_pred CeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecC
Q psy4525 153 EEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRG 206 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~ 206 (388)
++|+|||+|..|..+|..++ ..| .+|+++.+.+
T Consensus 5 kkvaViGaG~mG~~iA~~~a--------------------~~G-~~V~l~D~~~ 37 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAA--------------------ATG-HTVVLVDQTE 37 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHH--------------------HTT-CEEEEECSCH
T ss_pred EEEEEECcCHHHHHHHHHHH--------------------hCC-CcEEEEECCh
Confidence 79999999999999999776 244 4699988764
|
| >d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: Thi4-like domain: Thiazole biosynthetic enzyme Thi4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.43 E-value=0.27 Score=42.52 Aligned_cols=38 Identities=16% Similarity=0.240 Sum_probs=29.2
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcc
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGAL 208 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~ 208 (388)
..+|+|||+|++|+.+|..|++ +....+|+++.+.+.+
T Consensus 50 ~~~~~~~g~g~~g~~~a~~~~~-------------------~~~~~~~~~~~~~~~~ 87 (311)
T d2gjca1 50 VSDVIIVGAGSSGLSAAYVIAK-------------------NRPDLKVCIIESSVAP 87 (311)
T ss_dssp EESEEEECCSHHHHHHHHHHHH-------------------HCTTSCEEEECSSSSC
T ss_pred CCCEEEECCCHHHHHHHHHHHH-------------------hCCCCeEEEEEcCCCC
Confidence 4679999999999999998861 1223469999987654
|
| >d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Brevibacterium sterolicum [TaxId: 1702]
Probab=85.32 E-value=0.29 Score=43.25 Aligned_cols=51 Identities=10% Similarity=0.029 Sum_probs=32.7
Q ss_pred eEEEEecCcceeeeeCCCCceeEEEEccCc-cccCCceeEEecceEEEccccC
Q psy4525 272 YFRPIFLRSPTEFKLNDNGAITGINFANQQ-ALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 272 gv~~~~~~~~~~i~~~~~~~v~~v~~~~~~-~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
++++++++.|++|..+++ ....+.+.... .-.....+++.||.||+|+|.-
T Consensus 237 ~~~i~t~~~V~~I~~~~~-~~~~V~v~~~~~~~~~~~~~~~~A~~VILaAGai 288 (370)
T d3coxa1 237 KLTITTLHRVTKVAPATG-SGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSV 288 (370)
T ss_dssp CEEEECSEEEEEEEECSS-SSEEEEEEEECTTSCEEEEEEEEEEEEEECSHHH
T ss_pred CcEEEecCcEEEEEEcCC-CeEEEEEEEeCCccceeeEEEEECCEEEEeeCHH
Confidence 589999999999988643 33334332110 0011223579999999999964
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=85.31 E-value=0.52 Score=36.67 Aligned_cols=35 Identities=9% Similarity=0.114 Sum_probs=28.6
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~ 47 (388)
++...|+|+|+|+.|+.++..++. .+. +|+.+++.
T Consensus 27 k~g~~VlI~G~Gg~g~~~~~~~~~--~g~~~Vi~~~~~ 62 (175)
T d1cdoa2 27 EPGSTCAVFGLGAVGLAAVMGCHS--AGAKRIIAVDLN 62 (175)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEECSC
T ss_pred CCCCEEEEEecCCccchHHHHHHH--Hhhchheeecch
Confidence 455779999999999999999888 665 57778765
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=85.13 E-value=0.51 Score=37.52 Aligned_cols=35 Identities=14% Similarity=0.254 Sum_probs=31.6
Q ss_pred CCCCcEEEEC-ccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 11 QLKPNVCIVG-SGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIG-aG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
-..|+++|.| +|-.|..+|..|.+ .|.+|++++|+
T Consensus 21 l~gK~vlItGasgGIG~~ia~~la~--~G~~V~~~~r~ 56 (191)
T d1luaa1 21 VKGKKAVVLAGTGPVGMRSAALLAG--EGAEVVLCGRK 56 (191)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHH--TTCEEEEEESS
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHh--hccchhhcccc
Confidence 3568999999 58999999999999 89999999987
|
| >d1w4xa2 c.3.1.5 (A:155-389) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=84.96 E-value=0.38 Score=39.12 Aligned_cols=36 Identities=22% Similarity=0.473 Sum_probs=31.0
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLPV 49 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~~ 49 (388)
..|+|+|||+|-+|+-+|..+.+ .+.+++++-+.+.
T Consensus 31 ~gK~V~VvG~G~Sa~dia~~~~~--~~~~~~~~~~~~~ 66 (235)
T d1w4xa2 31 SGQRVGVIGTGSSGIQVSPQIAK--QAAELFVFQRTPH 66 (235)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHH--HBSEEEEEESSCC
T ss_pred CCCEEEEECCCccHHHHHHHHHh--hhccccccccccc
Confidence 57999999999999999999999 7888877776643
|
| >d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Cholesterol oxidase of GMC family species: Streptomyces sp. [TaxId: 1931]
Probab=84.90 E-value=0.3 Score=43.00 Aligned_cols=51 Identities=12% Similarity=0.030 Sum_probs=33.6
Q ss_pred eEEEEecCcceeeeeCCCC-ceeEEEEccCccccCCceeEEecceEEEccccC
Q psy4525 272 YFRPIFLRSPTEFKLNDNG-AITGINFANQQALVTEDTELIPSGIAFRSIGYQ 323 (388)
Q Consensus 272 gv~~~~~~~~~~i~~~~~~-~v~~v~~~~~~~~~~~~~~~l~~D~Vi~a~G~~ 323 (388)
++++++++.|++|..++++ ....++..+.. ......+++.|+.||+|+|.-
T Consensus 233 n~~i~~~t~V~~I~~~~~g~~~v~v~~~~~~-~~~~~~~~i~Ak~VVLaAGai 284 (367)
T d1n4wa1 233 KVTIQTLHQVKTIRQTKDGGYALTVEQKDTD-GKLLATKEISCRYLFLGAGSL 284 (367)
T ss_dssp SEEEEESEEEEEEEECTTSSEEEEEEEECTT-CCEEEEEEEEEEEEEECSHHH
T ss_pred CeEEECCCEEEEEEEcCCCCEEEEEEEECCC-CcceeEEEEecCEEEEecchh
Confidence 4999999999999876544 33444432211 011233578999999999964
|
| >d1aoga1 c.3.1.5 (A:3-169,A:287-357) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Trypanothione reductase species: Trypanosoma cruzi [TaxId: 5693]
Probab=84.16 E-value=0.37 Score=39.24 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=26.0
Q ss_pred eEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeec
Q psy4525 154 EATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRR 205 (388)
Q Consensus 154 ~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~ 205 (388)
.|+|||+|+.|+.+|..++ +.+.+.|.++.+.
T Consensus 5 DviIIG~GpaGl~aA~~aa--------------------~~g~k~V~iie~~ 36 (238)
T d1aoga1 5 DLVVIGAGSGGLEAAWNAA--------------------TLYKKRVAVIDVQ 36 (238)
T ss_dssp SEEEECCSHHHHHHHHHHH--------------------HTSCCCEEEEESC
T ss_pred CEEEECCCHHHHHHHHHHH--------------------HcCCCEEEEEEee
Confidence 4899999999999999776 3566678888764
|
| >d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Pyranose 2-oxidase species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]
Probab=83.89 E-value=0.37 Score=42.20 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=28.2
Q ss_pred eEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecCcc
Q psy4525 154 EATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRGAL 208 (388)
Q Consensus 154 ~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~~~ 208 (388)
.|+|||+|..|+-+|..|+ +.+ .+|.++++.+..
T Consensus 6 DviIVGsG~aG~v~A~~La--------------------~~G-~kVlvLEaG~~~ 39 (379)
T d2f5va1 6 DVVIVGSGPIGCTYARELV--------------------GAG-YKVAMFDIGEID 39 (379)
T ss_dssp EEEEECCSHHHHHHHHHHH--------------------HTT-CEEEEECSSCCC
T ss_pred cEEEECcCHHHHHHHHHHh--------------------hCC-CeEEEEecCCCC
Confidence 5999999999999999887 344 579999987544
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=83.78 E-value=0.7 Score=36.47 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=32.1
Q ss_pred CCCcEEEECccHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 12 LKPNVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
..++|.|||.|..|-..|..+.. .|.+|..+++.+
T Consensus 41 ~gk~vgIiG~G~IG~~va~~l~~--~g~~v~~~d~~~ 75 (181)
T d1qp8a1 41 QGEKVAVLGLGEIGTRVGKILAA--LGAQVRGFSRTP 75 (181)
T ss_dssp TTCEEEEESCSTHHHHHHHHHHH--TTCEEEEECSSC
T ss_pred cCceEEEeccccccccceeeeec--cccccccccccc
Confidence 46899999999999999999999 899999999764
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=83.76 E-value=0.75 Score=34.84 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=26.1
Q ss_pred cEEEEC-ccHHHHHHHHHHHhh-CCCCcEEEEcCC
Q psy4525 15 NVCIVG-SGPAGFYCAQQILKL-LPQSTVDIYEKL 47 (388)
Q Consensus 15 ~vvIIG-aG~aGl~aA~~l~~~-~~g~~v~lie~~ 47 (388)
+|.||| +|..|.++|..|... ....++.++|..
T Consensus 2 KV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~ 36 (145)
T d2cmda1 2 KVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIA 36 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSS
T ss_pred EEEEEcCCChHHHHHHHHHHhCCCCCcEEEEeccc
Confidence 799999 599999999988653 234689999854
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=83.17 E-value=0.67 Score=35.02 Aligned_cols=32 Identities=22% Similarity=0.215 Sum_probs=26.0
Q ss_pred cEEEEC-ccHHHHHHHHHHHhhCCCCcEEEEcC
Q psy4525 15 NVCIVG-SGPAGFYCAQQILKLLPQSTVDIYEK 46 (388)
Q Consensus 15 ~vvIIG-aG~aGl~aA~~l~~~~~g~~v~lie~ 46 (388)
+|.||| +|..|.++|..+..+...-++.++|.
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di 34 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIALRDIADEVVFVDI 34 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCCSEEEEECC
T ss_pred eEEEECCCCcHHHHHHHHHHhCCCCCEEEEEec
Confidence 799999 69999999999999422237888884
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=83.15 E-value=0.54 Score=32.88 Aligned_cols=35 Identities=17% Similarity=0.226 Sum_probs=30.9
Q ss_pred CCCCcEEEECccHHHHHH-HHHHHhhCCCCcEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYC-AQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~a-A~~l~~~~~g~~v~lie~~ 47 (388)
...+++-+||-|=+|+++ |..|.+ .|++|+-.|..
T Consensus 6 ~~~~~ihfiGigG~GMs~LA~~L~~--~G~~VsGSD~~ 41 (96)
T d1p3da1 6 RRVQQIHFIGIGGAGMSGIAEILLN--EGYQISGSDIA 41 (96)
T ss_dssp TTCCEEEEETTTSTTHHHHHHHHHH--HTCEEEEEESC
T ss_pred hhCCEEEEEEECHHHHHHHHHHHHh--CCCEEEEEeCC
Confidence 456899999999999988 888888 89999999965
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=83.11 E-value=0.28 Score=39.06 Aligned_cols=34 Identities=15% Similarity=0.197 Sum_probs=27.1
Q ss_pred CCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecC
Q psy4525 152 CEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRG 206 (388)
Q Consensus 152 ~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~ 206 (388)
-++|+|||+|..|..+|..++ ..| .+|+++.+.+
T Consensus 4 I~~vaViGaG~mG~~iA~~~a--------------------~~G-~~V~l~D~~~ 37 (186)
T d1wdka3 4 VKQAAVLGAGIMGGGIAYQSA--------------------SKG-TPILMKDINE 37 (186)
T ss_dssp CSSEEEECCHHHHHHHHHHHH--------------------HTT-CCEEEECSSH
T ss_pred CCEEEEECcCHHHHHHHHHHH--------------------hCC-CeEEEEECCH
Confidence 378999999999999998776 244 4699988764
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=82.93 E-value=0.63 Score=35.50 Aligned_cols=31 Identities=13% Similarity=0.143 Sum_probs=28.4
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
+|.|||+|-.|-+.+..|.+ .+.+++++++.
T Consensus 2 kIg~IG~G~mG~al~~~l~~--~~~~i~v~~r~ 32 (152)
T d2ahra2 2 KIGIIGVGKMASAIIKGLKQ--TPHELIISGSS 32 (152)
T ss_dssp EEEEECCSHHHHHHHHHHTT--SSCEEEEECSS
T ss_pred EEEEEeccHHHHHHHHHHHh--CCCeEEEEcCh
Confidence 68999999999999999998 78999999875
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=82.92 E-value=0.5 Score=39.26 Aligned_cols=34 Identities=21% Similarity=0.253 Sum_probs=30.2
Q ss_pred CCcEEEECccHHHHHHHHHHHhhCCCC-cEEEEcCCC
Q psy4525 13 KPNVCIVGSGPAGFYCAQQILKLLPQS-TVDIYEKLP 48 (388)
Q Consensus 13 ~~~vvIIGaG~aGl~aA~~l~~~~~g~-~v~lie~~~ 48 (388)
..+|+|||+|-.|..+|..|.+ .|. +++++|...
T Consensus 30 ~~~VliiG~GglGs~va~~La~--~Gvg~i~lvD~D~ 64 (247)
T d1jw9b_ 30 DSRVLIVGLGGLGCAASQYLAS--AGVGNLTLLDFDT 64 (247)
T ss_dssp HCEEEEECCSHHHHHHHHHHHH--HTCSEEEEECCCB
T ss_pred CCCEEEECCCHHHHHHHHHHHH--cCCCeEEEECCcc
Confidence 4699999999999999999999 897 789999653
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=82.57 E-value=0.84 Score=39.66 Aligned_cols=35 Identities=17% Similarity=0.136 Sum_probs=31.4
Q ss_pred CCCcEEEECc-cHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 12 LKPNVCIVGS-GPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGa-G~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
.+|.|+|+|| |..|-+++..|.+ .|++|+++-|++
T Consensus 2 ~kktIlVtGatG~iG~~lv~~Ll~--~G~~V~~l~R~~ 37 (350)
T d1xgka_ 2 QKKTIAVVGATGRQGASLIRVAAA--VGHHVRAQVHSL 37 (350)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHH--TTCCEEEEESCS
T ss_pred CCCEEEEECCChHHHHHHHHHHHh--CCCeEEEEECCc
Confidence 4689999997 9999999999999 899999998753
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=82.22 E-value=0.4 Score=35.56 Aligned_cols=20 Identities=15% Similarity=0.366 Sum_probs=18.4
Q ss_pred CeEEEEcCChHHHHHHHHhc
Q psy4525 153 EEATILGQGNVAMDVARILL 172 (388)
Q Consensus 153 ~~vvVIGgG~sg~e~a~~L~ 172 (388)
|+++|+|.|..|..+|..|.
T Consensus 1 k~~iIiG~G~~G~~la~~L~ 20 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELH 20 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHH
Confidence 67999999999999999886
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=81.75 E-value=0.44 Score=37.60 Aligned_cols=19 Identities=26% Similarity=0.424 Sum_probs=17.6
Q ss_pred eEEEEcCChHHHHHHHHhc
Q psy4525 154 EATILGQGNVAMDVARILL 172 (388)
Q Consensus 154 ~vvVIGgG~sg~e~a~~L~ 172 (388)
+|+|||+|..|.-+|..|+
T Consensus 2 kI~ViGaG~~GtalA~~la 20 (180)
T d1txga2 2 IVSILGAGAMGSALSVPLV 20 (180)
T ss_dssp EEEEESCCHHHHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHH
Confidence 6899999999999999886
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=81.73 E-value=0.92 Score=35.25 Aligned_cols=35 Identities=9% Similarity=0.034 Sum_probs=29.3
Q ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCC-CcEEEEcCC
Q psy4525 11 QLKPNVCIVGSGPAGFYCAQQILKLLPQ-STVDIYEKL 47 (388)
Q Consensus 11 ~~~~~vvIIGaG~aGl~aA~~l~~~~~g-~~v~lie~~ 47 (388)
++...|+|+|+|..|+.++..++. .+ .+|+.++.+
T Consensus 27 k~GdtVlV~GaGG~G~~~~~~~~~--~g~~~Vi~~~~~ 62 (176)
T d2jhfa2 27 TQGSTCAVFGLGGVGLSVIMGCKA--AGAARIIGVDIN 62 (176)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHH--TTCSEEEEECSC
T ss_pred CCCCEEEEECCCCcHHHHHHHHHH--cCCceEEeecCc
Confidence 456789999999999999999998 66 477788765
|
| >d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=81.41 E-value=0.46 Score=38.70 Aligned_cols=19 Identities=16% Similarity=0.424 Sum_probs=18.0
Q ss_pred eEEEEcCChHHHHHHHHhc
Q psy4525 154 EATILGQGNVAMDVARILL 172 (388)
Q Consensus 154 ~vvVIGgG~sg~e~a~~L~ 172 (388)
||+|||+|.+|+-+|..|+
T Consensus 2 kV~VIGaGi~GlstA~~L~ 20 (246)
T d1kifa1 2 RVVVIGAGVIGLSTALCIH 20 (246)
T ss_dssp EEEEECCSHHHHHHHHHHH
T ss_pred EEEEECchHHHHHHHHHHH
Confidence 6999999999999999887
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=81.19 E-value=1.9 Score=32.30 Aligned_cols=42 Identities=17% Similarity=0.192 Sum_probs=33.0
Q ss_pred CCcEEEECc-cHHHHHHHHHHHhh-CCCCcEEEEcCCCCCCCce
Q psy4525 13 KPNVCIVGS-GPAGFYCAQQILKL-LPQSTVDIYEKLPVPFGLV 54 (388)
Q Consensus 13 ~~~vvIIGa-G~aGl~aA~~l~~~-~~g~~v~lie~~~~~gg~~ 54 (388)
+.+|+|||| |..|..+...|.++ ++..++..+-.....|-.+
T Consensus 2 ~mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i 45 (144)
T d2hjsa1 2 PLNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRM 45 (144)
T ss_dssp CCCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEE
T ss_pred CCEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcce
Confidence 468999999 99999999999753 4778888887665555443
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=80.84 E-value=0.85 Score=35.41 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=29.5
Q ss_pred CCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecC
Q psy4525 149 SLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRG 206 (388)
Q Consensus 149 ~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~ 206 (388)
..++|+|+|+|+|-+|--++..|. +.+. +|+++.|+.
T Consensus 15 ~~~~k~vlIlGaGGaarai~~al~--------------------~~g~-~i~I~nRt~ 51 (170)
T d1nyta1 15 IRPGLRILLIGAGGASRGVLLPLL--------------------SLDC-AVTITNRTV 51 (170)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHH--------------------HTTC-EEEEECSSH
T ss_pred CCCCCEEEEECCcHHHHHHHHHhc--------------------ccce-EEEeccchH
Confidence 456899999999999988888665 3555 599998873
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=80.79 E-value=0.74 Score=34.97 Aligned_cols=32 Identities=22% Similarity=0.217 Sum_probs=27.3
Q ss_pred cEEEECccHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 15 NVCIVGSGPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 15 ~vvIIGaG~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
+|.+||+|--|-+.|..|.+. .+.++.+++|+
T Consensus 2 kI~fIG~G~MG~ai~~~l~~~-~~~~i~v~~r~ 33 (152)
T d1yqga2 2 NVYFLGGGNMAAAVAGGLVKQ-GGYRIYIANRG 33 (152)
T ss_dssp EEEEECCSHHHHHHHHHHHHH-CSCEEEEECSS
T ss_pred EEEEEcCcHHHHHHHHHHHHC-CCCcEEEEeCC
Confidence 689999999999999988873 23889999876
|
| >d2b69a1 c.2.1.2 (A:4-315) UDP-glucuronate decarboxylase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: UDP-glucuronate decarboxylase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.68 E-value=0.79 Score=39.29 Aligned_cols=33 Identities=15% Similarity=0.346 Sum_probs=29.5
Q ss_pred CCcEEEECc-cHHHHHHHHHHHhhCCCCcEEEEcCC
Q psy4525 13 KPNVCIVGS-GPAGFYCAQQILKLLPQSTVDIYEKL 47 (388)
Q Consensus 13 ~~~vvIIGa-G~aGl~aA~~l~~~~~g~~v~lie~~ 47 (388)
+|+|+|.|| |+.|-.++..|.+ .|++|+.+++.
T Consensus 1 kKKIlVtG~sGfiG~~lv~~L~~--~g~~V~~~d~~ 34 (312)
T d2b69a1 1 RKRILITGGAGFVGSHLTDKLMM--DGHEVTVVDNF 34 (312)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHH--TTCEEEEEECC
T ss_pred CCEEEEECCCcHHHHHHHHHHHH--CcCEEEEEeCC
Confidence 478999987 9999999999999 89999999864
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=80.61 E-value=0.59 Score=36.51 Aligned_cols=37 Identities=24% Similarity=0.226 Sum_probs=28.8
Q ss_pred CCCCCeEEEEcCChHHHHHHHHhccCCcccccccCchhHHHhhhcCCCcEEEEEeecC
Q psy4525 149 SLDCEEATILGQGNVAMDVARILLSPVDQLKSTDITEHSLEKLSTSRIKSVNLVGRRG 206 (388)
Q Consensus 149 ~~~~~~vvVIGgG~sg~e~a~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~r~~ 206 (388)
..++++|+|+|+|-+|--++..|. + +..+|+++.|+.
T Consensus 15 ~~~~k~vlIlGaGGaarai~~aL~--------------------~-~~~~i~I~nR~~ 51 (171)
T d1p77a1 15 LRPNQHVLILGAGGATKGVLLPLL--------------------Q-AQQNIVLANRTF 51 (171)
T ss_dssp CCTTCEEEEECCSHHHHTTHHHHH--------------------H-TTCEEEEEESSH
T ss_pred CCCCCEEEEECCcHHHHHHHHHHc--------------------c-cCceeeeccchH
Confidence 346899999999999877777654 2 346899999883
|
| >d2c5aa1 c.2.1.2 (A:13-375) GDP-mannose-3', 5'-epimerase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose-3', 5'-epimerase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=80.46 E-value=1 Score=39.31 Aligned_cols=35 Identities=14% Similarity=0.043 Sum_probs=30.5
Q ss_pred CCCcEEEECc-cHHHHHHHHHHHhhCCCCcEEEEcCCC
Q psy4525 12 LKPNVCIVGS-GPAGFYCAQQILKLLPQSTVDIYEKLP 48 (388)
Q Consensus 12 ~~~~vvIIGa-G~aGl~aA~~l~~~~~g~~v~lie~~~ 48 (388)
..++|+|.|| |+.|-.++..|.+ .|.+|+++|+..
T Consensus 14 ~nMKILVTGgsGfIGs~lv~~L~~--~g~~V~~~d~~~ 49 (363)
T d2c5aa1 14 ENLKISITGAGGFIASHIARRLKH--EGHYVIASDWKK 49 (363)
T ss_dssp SCCEEEEETTTSHHHHHHHHHHHH--TTCEEEEEESSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHH--CcCEEEEEeCCC
Confidence 4567999985 9999999999999 899999998753
|