Psyllid ID: psy455

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------
Protein Sequence
MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFRYK
Secondary Structure (PSIPRED)
cccEEEEEEEEEEEcccccEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEEEHHcccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
mngvcvrwrgwldlerldgvgcleydeEKAMIEDAMLRDQIERYNQRLRDAYLGFRYK
Flexible Loop (DISEMBL)
mngvcvrwrgwldlerldgVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFRYK
Low Complexity Region (SEG)
MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFRYK
Disordered region (IsUnstruct)
***VCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGF***
Disordered Region (DISOPRED)
*NGVCVRWRGWLDLERLDGVGCLEYDEEKA********************AYLGFRYK
Disordered Region (DISEMBL)
MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFRYK
Disordered Region (DISPRO)
MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFRYK
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFRYK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	58	2.2.26 [Sep-21-2011]
Q24040	213	Protein big brother OS=Dr	yes	N/A	0.862	0.234	0.84	7e-19
Q24039	213	Protein brother OS=Drosop	no	N/A	0.879	0.239	0.627	2e-14
Q13951	182	Core-binding factor subun	yes	N/A	0.862	0.274	0.56	3e-11
Q08024	187	Core-binding factor subun	yes	N/A	0.862	0.267	0.56	6e-11

>sp|Q24040|BGB_DROME Protein big brother OS=Drosophila melanogaster GN=Bgb PE=2 SV=3

 Score = 92.4 bits (228), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 42/50 (84%), Positives = 48/50 (96%)

Query: 1   MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRD 50
           MNGVCVR+RGW+DLERLDGVGCLEYDE +AM EDA+LRDQI+RYNQRLR+
Sbjct: 127 MNGVCVRFRGWIDLERLDGVGCLEYDERRAMHEDAILRDQIDRYNQRLRE 176

Regulates the DNA-binding properties of Runt.
Drosophila melanogaster (taxid: 7227)

>sp|Q24039|BRO_DROME Protein brother OS=Drosophila melanogaster GN=Bro PE=2 SV=2

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 32/51 (62%), Positives = 44/51 (86%)

Query: 1   MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDA 51
           MNGVCVR+RGW+DL+RLDG  CLE+DE++A  EDA L++QI+ YNQR+ ++
Sbjct: 134 MNGVCVRFRGWVDLDRLDGAACLEFDEQRAQQEDAQLQEQIQSYNQRMAES 184

Regulates the DNA-binding properties of Runt.

Drosophila melanogaster (taxid: 7227)

>sp|Q13951|PEBB_HUMAN Core-binding factor subunit beta OS=Homo sapiens GN=CBFB PE=1 SV=2

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 39/50 (78%)

Query: 1   MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRD 50
           +NGVCV W+GW+DL+RLDG+GCLE+DEE+A  EDA+ +   E   +R R+
Sbjct: 103 LNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQEDALAQQAFEEARRRTRE 152

CBF binds to the core site, 5'-PYGPYGGT-3', of a number of enhancers and promoters, including murine leukemia virus, polyomavirus enhancer, T-cell receptor enhancers, LCK, IL3 and GM-CSF promoters. CBFB enhances DNA binding by RUNX1.

Homo sapiens (taxid: 9606)

>sp|Q08024|PEBB_MOUSE Core-binding factor subunit beta OS=Mus musculus GN=Cbfb PE=1 SV=1

 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 38/50 (76%)

Query: 1   MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRD 50
           +NGVCV W+GW+DL RLDG+GCLE+DEE+A  EDA+ +   E   +R R+
Sbjct: 103 LNGVCVIWKGWIDLHRLDGMGCLEFDEERAQQEDALAQQAFEEARRRTRE 152

CBF binds to the core site, 5'-PYGPYGGT-3', of a number of enhancers and promoters, including murine leukemia virus, polyomavirus enhancer, T-cell receptor enhancers, LCK, IL3 and GM-CSF promoters. CBFB enhances DNA binding by RUNX1.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	58
357627150	232	hypothetical protein KGM_04490 [Danaus p	0.862	0.215	0.9	4e-19
322801234	300	hypothetical protein SINV_00819 [Solenop	0.862	0.166	0.88	6e-19
307186295	179	Protein big brother [Camponotus floridan	0.862	0.279	0.86	1e-18
332029606	256	Protein big brother [Acromyrmex echinati	0.862	0.195	0.88	1e-18
307206421	320	Protein big brother [Harpegnathos saltat	0.862	0.156	0.86	2e-18
195012243	214	GH15954 [Drosophila grimshawi] gi|193897	0.862	0.233	0.88	5e-18
91082337	274	PREDICTED: similar to GA20722-PA [Tribol	0.862	0.182	0.86	7e-18
195442852	214	GK24387 [Drosophila willistoni] gi|19416	0.862	0.233	0.86	2e-17
194747101	213	GF24819 [Drosophila ananassae] gi|190623	0.862	0.234	0.86	2e-17
195375156	214	GJ12861 [Drosophila virilis] gi|19415352	0.862	0.233	0.86	2e-17

>gi|357627150|gb|EHJ76936.1| hypothetical protein KGM_04490 [Danaus plexippus]

 Score = 98.6 bits (244), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 45/50 (90%), Positives = 47/50 (94%)

Query: 1   MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRD 50
           MNGVCVRWRGW+DLERLDGVGCLE DEE+A IEDA LRDQIERYNQRLRD
Sbjct: 124 MNGVCVRWRGWIDLERLDGVGCLELDEERAAIEDAALRDQIERYNQRLRD 173

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322801234|gb|EFZ21921.1| hypothetical protein SINV_00819 [Solenopsis invicta]

 Score = 97.8 bits (242), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 44/50 (88%), Positives = 47/50 (94%)

Query: 1   MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRD 50
           MNGVCVRWRGW+DLERLDGVGCLEYDEE A  EDA+LRDQ+ERYNQRLRD
Sbjct: 172 MNGVCVRWRGWIDLERLDGVGCLEYDEEHAAEEDALLRDQLERYNQRLRD 221

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186295|gb|EFN71958.1| Protein big brother [Camponotus floridanus]

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/50 (86%), Positives = 48/50 (96%)

Query: 1   MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRD 50
           MNGVCVRWRGW+DL+RLDGVGCLEYDEE+A  EDA+LRDQ+ERYNQRLRD
Sbjct: 51  MNGVCVRWRGWIDLDRLDGVGCLEYDEERAAEEDALLRDQLERYNQRLRD 100

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332029606|gb|EGI69495.1| Protein big brother [Acromyrmex echinatior]

 Score = 97.4 bits (241), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 44/50 (88%), Positives = 47/50 (94%)

Query: 1   MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRD 50
           MNGVCVRWRGW+DLERLDGVGCLEYDEE A  EDA+LRDQ+ERYNQRLRD
Sbjct: 128 MNGVCVRWRGWIDLERLDGVGCLEYDEEHAAEEDALLRDQLERYNQRLRD 177

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307206421|gb|EFN84459.1| Protein big brother [Harpegnathos saltator]

 Score = 96.3 bits (238), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/50 (86%), Positives = 48/50 (96%)

Query: 1   MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRD 50
           MNGVCVRWRGW+DLERLDGVGCLEYDEE+A  EDA+LR+Q+ERYNQRLRD
Sbjct: 132 MNGVCVRWRGWIDLERLDGVGCLEYDEERAAEEDALLREQLERYNQRLRD 181

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195012243|ref|XP_001983546.1| GH15954 [Drosophila grimshawi] gi|193897028|gb|EDV95894.1| GH15954 [Drosophila grimshawi]

 Score = 95.1 bits (235), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 44/50 (88%), Positives = 48/50 (96%)

Query: 1   MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRD 50
           MNGVCVR+RGWLDLERLDGVGCLEYDE +AM EDA+LRDQI+RYNQRLRD
Sbjct: 128 MNGVCVRFRGWLDLERLDGVGCLEYDERRAMHEDAILRDQIDRYNQRLRD 177

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91082337|ref|XP_966458.1| PREDICTED: similar to GA20722-PA [Tribolium castaneum]

 Score = 94.4 bits (233), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 43/50 (86%), Positives = 47/50 (94%)

Query: 1   MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRD 50
           MNGVCVRWRGWLDLERLDGVGCLEY EE+A  EDA+LR+QIERYNQRLR+
Sbjct: 131 MNGVCVRWRGWLDLERLDGVGCLEYCEERAAQEDALLREQIERYNQRLRE 180

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195442852|ref|XP_002069160.1| GK24387 [Drosophila willistoni] gi|194165245|gb|EDW80146.1| GK24387 [Drosophila willistoni]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/50 (86%), Positives = 48/50 (96%)

Query: 1   MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRD 50
           MNGVCVR+RGWLDLERLDGVGCLEYDE +AM EDA+LRDQI+RYNQRLR+
Sbjct: 128 MNGVCVRFRGWLDLERLDGVGCLEYDERRAMHEDAILRDQIDRYNQRLRE 177

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194747101|ref|XP_001955991.1| GF24819 [Drosophila ananassae] gi|190623273|gb|EDV38797.1| GF24819 [Drosophila ananassae]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/50 (86%), Positives = 48/50 (96%)

Query: 1   MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRD 50
           MNGVCVR+RGWLDLERLDGVGCLEYDE +AM EDA+LRDQI+RYNQRLR+
Sbjct: 127 MNGVCVRFRGWLDLERLDGVGCLEYDERRAMHEDAILRDQIDRYNQRLRE 176

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195375156|ref|XP_002046369.1| GJ12861 [Drosophila virilis] gi|194153527|gb|EDW68711.1| GJ12861 [Drosophila virilis]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 43/50 (86%), Positives = 48/50 (96%)

Query: 1   MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRD 50
           MNGVCVR+RGWLDLERLDGVGCLEYDE +AM EDA+LRDQI+RYNQRLR+
Sbjct: 128 MNGVCVRFRGWLDLERLDGVGCLEYDERRAMHEDAILRDQIDRYNQRLRE 177

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	58
FB|FBgn0013753	213	Bgb "Big brother" [Drosophila	0.862	0.234	0.84	9.2e-20
FB|FBgn0013755	213	Bro "Brother" [Drosophila mela	0.879	0.239	0.627	3.3e-15
ZFIN|ZDB-GENE-980526-440	187	cbfb "core-binding factor, bet	0.862	0.267	0.62	1.3e-13
UNIPROTKB|F1NQP4	121	CBFB "Uncharacterized protein"	0.862	0.413	0.56	5.6e-13
UNIPROTKB|F1P4A1	132	CBFB "Uncharacterized protein"	0.862	0.378	0.56	5.6e-13
UNIPROTKB|Q5ZM50	87	CBFB "Uncharacterized protein"	0.862	0.574	0.56	5.6e-13
UNIPROTKB|E1B9S8	182	CBFB "Uncharacterized protein"	0.862	0.274	0.56	5.6e-13
UNIPROTKB|E2REW4	187	CBFB "Uncharacterized protein"	0.862	0.267	0.56	5.6e-13
UNIPROTKB|J3KRT0	61	CBFB "Core-binding factor subu	0.862	0.819	0.56	5.6e-13
UNIPROTKB|J3KS23	82	CBFB "Core-binding factor subu	0.862	0.609	0.56	5.6e-13

FB|FBgn0013753 Bgb "Big brother" [Drosophila melanogaster (taxid:7227)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 42/50 (84%), Positives = 48/50 (96%)

Query:     1 MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRD 50
             MNGVCVR+RGW+DLERLDGVGCLEYDE +AM EDA+LRDQI+RYNQRLR+
Sbjct:   127 MNGVCVRFRGWIDLERLDGVGCLEYDERRAMHEDAILRDQIDRYNQRLRE 176

GO:0003713 "transcription coactivator activity" evidence=ISS;IDA;IPI

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0016513 "core-binding factor complex" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0046982 "protein heterodimerization activity" evidence=TAS

GO:0008134 "transcription factor binding" evidence=TAS

GO:0035206 "regulation of hemocyte proliferation" evidence=IMP

FB|FBgn0013755 Bro "Brother" [Drosophila melanogaster (taxid:7227)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 32/51 (62%), Positives = 44/51 (86%)

Query:     1 MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDA 51
             MNGVCVR+RGW+DL+RLDG  CLE+DE++A  EDA L++QI+ YNQR+ ++
Sbjct:   134 MNGVCVRFRGWVDLDRLDGAACLEFDEQRAQQEDAQLQEQIQSYNQRMAES 184

GO:0005634 "nucleus" evidence=NAS;IDA

GO:0003713 "transcription coactivator activity" evidence=ISS;IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0016513 "core-binding factor complex" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=TAS

GO:0048749 "compound eye development" evidence=TAS

GO:0008134 "transcription factor binding" evidence=TAS

GO:0046982 "protein heterodimerization activity" evidence=TAS

GO:0035206 "regulation of hemocyte proliferation" evidence=IMP

ZFIN|ZDB-GENE-980526-440 cbfb "core-binding factor, beta subunit" [Danio rerio (taxid:7955)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 31/50 (62%), Positives = 38/50 (76%)

Query:     1 MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRD 50
             +NGVCV WRGWLDL RLDG+GCLEYD+E+A  EDA+ +   E   +R RD
Sbjct:   103 LNGVCVIWRGWLDLHRLDGMGCLEYDDERAQHEDALAQAAFEEARRRTRD 152

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IC

GO:0000988 "protein binding transcription factor activity" evidence=IC

GO:0046982 "protein heterodimerization activity" evidence=IPI

GO:0016513 "core-binding factor complex" evidence=IPI

GO:0003677 "DNA binding" evidence=IPI

GO:0030018 "Z disc" evidence=IDA

GO:0060047 "heart contraction" evidence=IMP

GO:0045214 "sarcomere organization" evidence=IMP

GO:0048769 "sarcomerogenesis" evidence=IMP

UNIPROTKB|F1NQP4 CBFB "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 28/50 (56%), Positives = 39/50 (78%)

Query:     1 MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRD 50
             +NGVCV W+GW+DL+RLDG+GCLE+DEE+A  EDA+ +   E   +R R+
Sbjct:    48 LNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQEDALAQQAFEEARRRTRE 97

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1P4A1 CBFB "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 28/50 (56%), Positives = 39/50 (78%)

Query:     1 MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRD 50
             +NGVCV W+GW+DL+RLDG+GCLE+DEE+A  EDA+ +   E   +R R+
Sbjct:    48 LNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQEDALAQQAFEEARRRTRE 97

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0001649 "osteoblast differentiation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030098 "lymphocyte differentiation" evidence=IEA

GO:0030099 "myeloid cell differentiation" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0048469 "cell maturation" evidence=IEA

GO:0060216 "definitive hemopoiesis" evidence=IEA

UNIPROTKB|Q5ZM50 CBFB "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 28/50 (56%), Positives = 39/50 (78%)

Query:     1 MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRD 50
             +NGVCV W+GW+DL+RLDG+GCLE+DEE+A  EDA+ +   E   +R R+
Sbjct:     3 LNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQEDALAQQAFEEARRRTRE 52

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0001649 "osteoblast differentiation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030098 "lymphocyte differentiation" evidence=IEA

GO:0030099 "myeloid cell differentiation" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0048469 "cell maturation" evidence=IEA

GO:0060216 "definitive hemopoiesis" evidence=IEA

UNIPROTKB|E1B9S8 CBFB "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 28/50 (56%), Positives = 39/50 (78%)

Query:     1 MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRD 50
             +NGVCV W+GW+DL+RLDG+GCLE+DEE+A  EDA+ +   E   +R R+
Sbjct:   103 LNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQEDALAQQAFEEARRRTRE 152

GO:0060216 "definitive hemopoiesis" evidence=IEA

GO:0048469 "cell maturation" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0030099 "myeloid cell differentiation" evidence=IEA

GO:0030098 "lymphocyte differentiation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001649 "osteoblast differentiation" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

UNIPROTKB|E2REW4 CBFB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 28/50 (56%), Positives = 39/50 (78%)

Query:     1 MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRD 50
             +NGVCV W+GW+DL+RLDG+GCLE+DEE+A  EDA+ +   E   +R R+
Sbjct:   103 LNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQEDALAQQAFEEARRRTRE 152

GO:0060216 "definitive hemopoiesis" evidence=IEA

GO:0048469 "cell maturation" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0030099 "myeloid cell differentiation" evidence=IEA

GO:0030098 "lymphocyte differentiation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0001649 "osteoblast differentiation" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

UNIPROTKB|J3KRT0 CBFB "Core-binding factor subunit beta" [Homo sapiens (taxid:9606)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 28/50 (56%), Positives = 39/50 (78%)

Query:     1 MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRD 50
             +NGVCV W+GW+DL+RLDG+GCLE+DEE+A  EDA+ +   E   +R R+
Sbjct:     3 LNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQEDALAQQAFEEARRRTRE 52

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0001649 "osteoblast differentiation" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030098 "lymphocyte differentiation" evidence=IEA

GO:0030099 "myeloid cell differentiation" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0048469 "cell maturation" evidence=IEA

GO:0060216 "definitive hemopoiesis" evidence=IEA

UNIPROTKB|J3KS23 CBFB "Core-binding factor subunit beta" [Homo sapiens (taxid:9606)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 28/50 (56%), Positives = 39/50 (78%)

Query:     1 MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRD 50
             +NGVCV W+GW+DL+RLDG+GCLE+DEE+A  EDA+ +   E   +R R+
Sbjct:     3 LNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQEDALAQQAFEEARRRTRE 52

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q13951	PEBB_HUMAN	No assigned EC number	0.56	0.8620	0.2747	yes	N/A
Q08024	PEBB_MOUSE	No assigned EC number	0.56	0.8620	0.2673	yes	N/A
Q24040	BGB_DROME	No assigned EC number	0.84	0.8620	0.2347	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	58
pfam02312	170	pfam02312, CBF_beta, Core binding factor beta subu	5e-24
PRK15451	247	PRK15451, PRK15451, tRNA cmo(5)U34 methyltransfera	1e-04

>gnl|CDD|216970 pfam02312, CBF_beta, Core binding factor beta subunit

 Score = 87.5 bits (217), Expect = 5e-24
 Identities = 37/50 (74%), Positives = 47/50 (94%)

Query: 1   MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRD 50
           +NGVCV +RGW+DLERLDG+GCLEYDEE+A  EDA+LR+Q+E+YNQRLR+
Sbjct: 98  LNGVCVIFRGWMDLERLDGMGCLEYDEERAQQEDAILREQLEQYNQRLRE 147

Core binding factor (CBF) is a heterodimeric transcription factor essential for genetic regulation of hematopoiesis and osteogenesis. The beta subunit enhances DNA-binding ability of the alpha subunit in vitro, and has been show to have a structure related to the OB fold. Length = 170

>gnl|CDD|185348 PRK15451, PRK15451, tRNA cmo(5)U34 methyltransferase; Provisional

 Score = 36.9 bits (85), Expect = 1e-04
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 13  DLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFRY 57
           D +R +G   LE  ++++M+E+ ML D +E +  RL  A  GF +
Sbjct: 183 DFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKA--GFEH 225

Length = 247

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	58
PF02312	169	CBF_beta: Core binding factor beta subunit; InterP	99.96
KOG4785|consensus	177		99.92
PRK04570	243	cell division protein ZipA; Provisional	82.73

>PF02312 CBF_beta: Core binding factor beta subunit; InterPro: IPR003417 Core binding factor (CBF) is a heterodimeric transcription factor essential for genetic regulation of hematopoiesis and osteogenesis

Probab=99.96  E-value=5.1e-31  Score=181.61  Aligned_cols=56  Identities=71%  Similarity=1.316  Sum_probs=36.7

Q ss_pred             CceeEEeeeeeeeceecCCceeeeechhHhhhHHHHHHHHHHHHHHHHHhhhhhcc
Q psy455            1 MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFR   56 (58)
Q Consensus         1 lNgVcV~wrG~~dl~rldG~~~Lefdee~A~~ED~~~re~~e~~~~R~refEdr~~   56 (58)
                      ||||||+|||||||++|||+|||+||+++|++||++++++|++|++|++|||++.|
T Consensus        98 lNGVCV~~rGwidlerLdG~g~LefDeerA~~Ed~~~~~~~e~~~~r~refee~~r  153 (169)
T PF02312_consen   98 LNGVCVRWRGWIDLERLDGVGCLEFDEERAQIEDALLREQFEQYNQRIREFEERQR  153 (169)
T ss_dssp             ETTEEEEEEEEEETTTTEEEEEEEE-HHHHHHHHHHCT------------------
T ss_pred             EeeEEEEEEEEeehhhccCcceeeeCHHHHHHHHHHHHHHHHHHHhhccchhhccc
Confidence            79999999999999999999999999999999999999999999999999999986

The beta subunit binds to the core site, 5'-PYGPYGGT-3', of a number of enhancers and promoters, including Murine leukemia virus, Polyomavirus enhancer, T-cell receptor enhancers etc. The beta subunit enhances DNA-binding ability of the alpha subunit in vitro, and has been show to have a structure related to the OB fold []. Also included in this family are the Drosophila melanogaster brother and big brother proteins, which regulate the DNA-binding properties of Runt.; GO: 0003713 transcription coactivator activity, 0005634 nucleus; PDB: 2JHB_A 1IO4_D 1ILF_A 1CL3_A 1H9D_B 1E50_H.

>KOG4785|consensus

Probab=99.92  E-value=2.4e-26  Score=159.40  Aligned_cols=56  Identities=54%  Similarity=1.002  Sum_probs=55.0

Q ss_pred             CceeEEeeeeeeeceecCCceeeeechhHhhhHHHHHHHHHHHHHHHHHhhhhhcc
Q psy455            1 MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFR   56 (58)
Q Consensus         1 lNgVcV~wrG~~dl~rldG~~~Lefdee~A~~ED~~~re~~e~~~~R~refEdr~~   56 (58)
                      ||||||+|+||||+++|||+|||+||+.+|++||++++++|+.+++|+++|||+.|
T Consensus        98 ~NGvcV~~~GwidlErLdG~gclefde~ra~~eDai~~~~f~~~~~r~refed~~r  153 (177)
T KOG4785|consen   98 LNGVCVIWKGWIDLERLDGMGCLEFDEERAQQEDALAQQAFEEARRRTREFEDRDR  153 (177)
T ss_pred             eeeeEEEEEeeechhhccCccceehhHHHHHhHHHHHHHHHHHHHhhcccccccch
Confidence            79999999999999999999999999999999999999999999999999999876

>PRK04570 cell division protein ZipA; Provisional

Probab=82.73  E-value=0.69  Score=34.08  Aligned_cols=31  Identities=16%  Similarity=0.213  Sum_probs=24.8

Q ss_pred             eeechhHhhhHHHHHHHHHHHHHHHHHhhhhhccC
Q psy455           23 LEYDEEKAMIEDAMLRDQIERYNQRLRDAYLGFRY   57 (58)
Q Consensus        23 Lefdee~A~~ED~~~re~~e~~~~R~refEdr~~~   57 (58)
                      ..+|+++..    +..|.++.|++|+|+||.|.+.
T Consensus       204 ~VLDe~R~~----lT~Q~iehyRqrIreyeRr~~~  234 (243)
T PRK04570        204 VVLDDSRNA----LGRQRIAHIRDELRAYDRQHQA  234 (243)
T ss_pred             EEecCCccc----CCHHHHHHHHHHHHHHHHhhcC
Confidence            346776654    5789999999999999988763

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	58
2jhb_A	143	Core Binding Factor Beta Length = 143		7e-11
1io4_D	141	Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN		7e-11
1cl3_A	138	Molecular Insights Into Pebp2CBF-Smmhc Associated A		7e-11
1h9d_B	134	Aml1CBF-BetaDNA COMPLEX Length = 134		1e-09

>pdb|2JHB|A Chain A, Core Binding Factor Beta Length = 143

Iteration: 1
 Score = 62.4 bits (150), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 32/36 (88%)
Query: 1   MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAM 36
           +NGVCV W+GW+DL RLDG+GCLE+DEE+A  EDA+
Sbjct: 105 LNGVCVIWKGWIDLHRLDGMGCLEFDEERAQQEDAL 140

>pdb|1IO4|D Chain D, Crystal Structure Of Runx-1AML1CBFALPHA RUNT DOMAIN- Cbfbeta Core Domain Heterodimer And CEBPBETA BZIP Homodimer Bound To A Dna Fragment From The Csf-1r Promoter Length = 141

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 32/36 (88%)
Query: 1   MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAM 36
           +NGVCV W+GW+DL RLDG+GCLE+DEE+A  EDA+
Sbjct: 103 LNGVCVIWKGWIDLHRLDGMGCLEFDEERAQQEDAL 138

>pdb|1CL3|A Chain A, Molecular Insights Into Pebp2CBF-Smmhc Associated Acute Leukemia Revealed From The Three-Dimensional Structure Of Pebp2CBF BETA Length = 138

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 25/36 (69%), Positives = 32/36 (88%)
Query: 1   MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIEDAM 36
           +NGVCV W+GW+DL RLDG+GCLE+DEE+A  EDA+
Sbjct: 100 LNGVCVIWKGWIDLHRLDGMGCLEFDEERAQQEDAL 135

>pdb|1H9D|B Chain B, Aml1CBF-BetaDNA COMPLEX Length = 134

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 23/33 (69%), Positives = 30/33 (90%)
Query: 1   MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIE 33
           +NGVCV W+GW+DL+RLDG+GCLE+DEE+A  E
Sbjct: 102 LNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQE 134

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	58
1e50_B	134	Core-binding factor CBF-beta; transcription factor	4e-15

>1e50_B Core-binding factor CBF-beta; transcription factor, transcription; 2.60A {Homo sapiens} SCOP: b.54.1.1 PDB: 1h9d_B* 1ilf_A 1io4_D 2jhb_A 1cl3_A Length = 134

 Score = 63.1 bits (153), Expect = 4e-15
 Identities = 23/33 (69%), Positives = 30/33 (90%)

Query: 1   MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIE 33
           +NGVCV W+GW+DL+RLDG+GCLE+DEE+A  E
Sbjct: 102 LNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQE 134

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	58
1e50_B	134	Core-binding factor CBF-beta; transcription factor	99.82

>1e50_B Core-binding factor CBF-beta; transcription factor, transcription; 2.60A {Homo sapiens} SCOP: b.54.1.1 PDB: 1h9d_B* 1ilf_A 1io4_D 2jhb_A 1cl3_A

Probab=99.82  E-value=1.6e-21  Score=130.03  Aligned_cols=33  Identities=70%  Similarity=1.514  Sum_probs=32.1

Q ss_pred             CceeEEeeeeeeeceecCCceeeeechhHhhhH
Q psy455            1 MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIE   33 (58)
Q Consensus         1 lNgVcV~wrG~~dl~rldG~~~Lefdee~A~~E   33 (58)
                      ||||||+|||||||++|||+||||||+++|++|
T Consensus       102 ~NGVCV~~rGwldlerLdG~g~LefDeerA~~E  134 (134)
T 1e50_B          102 LNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQE  134 (134)
T ss_dssp             ETTEEEEEEEEEETTTSEEEEEEEECHHHHHHC
T ss_pred             ecceEEEEEEEEeeecccceEEeeECHHHhhcC
Confidence            799999999999999999999999999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	58
d1e50b_	134	b.54.1.1 (B:) Core binding factor beta, CBF {Human	4e-19

>d1e50b_ b.54.1.1 (B:) Core binding factor beta, CBF {Human (Homo sapiens) [TaxId: 9606]} Length = 134

class: All beta proteins
fold: Core binding factor beta, CBF
superfamily: Core binding factor beta, CBF
family: Core binding factor beta, CBF
domain: Core binding factor beta, CBF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 72.2 bits (177), Expect = 4e-19
 Identities = 23/33 (69%), Positives = 30/33 (90%)

Query: 1   MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIE 33
           +NGVCV W+GW+DL+RLDG+GCLE+DEE+A  E
Sbjct: 102 LNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQE 134

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	58
d1e50b_	134	Core binding factor beta, CBF {Human (Homo sapiens	99.82

>d1e50b_ b.54.1.1 (B:) Core binding factor beta, CBF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Core binding factor beta, CBF
superfamily: Core binding factor beta, CBF
family: Core binding factor beta, CBF
domain: Core binding factor beta, CBF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.5e-22  Score=131.15  Aligned_cols=33  Identities=70%  Similarity=1.514  Sum_probs=32.1

Q ss_pred             CceeEEeeeeeeeceecCCceeeeechhHhhhH
Q psy455            1 MNGVCVRWRGWLDLERLDGVGCLEYDEEKAMIE   33 (58)
Q Consensus         1 lNgVcV~wrG~~dl~rldG~~~Lefdee~A~~E   33 (58)
                      ||||||+|||||||++|||+||||||+++|++|
T Consensus       102 mNGVCV~~rGwidlerLdG~g~le~de~rA~~E  134 (134)
T d1e50b_         102 LNGVCVIWKGWIDLQRLDGMGCLEFDEERAQQE  134 (134)
T ss_dssp             ETTEEEEEEEEEETTTSEEEEEEEECHHHHHHC
T ss_pred             EcceEEEEEEEEehhhcCCeeeeEechhhhhcC
Confidence            799999999999999999999999999999986