Psyllid ID: psy4598

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------37
Protein Sequence
MKGSWDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPEQIFLNEKAPDFPNLPTFKPREVYQKAQSQTIPNIPHDKKQVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK
Secondary Structure (PSIPRED)
cccccEEEEccEEEEEEccccccccEEEEEEccccEEEccccccccccccccEEccccHHHHHHHHHHcccEEEEEEcccccccccccHHHHHHHHHHHHHHccccEEEEEEccccccccccccHHHHHHHHHcccccccccccEEEEcccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccHHHcccccccEEEEEccccccHHHHHHHHHHccccEEEEEEEcccccccEEEEccccccEEEEcccccccHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHHccccEEEEEEEccHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccEEEEcccEEEEEEccccccccEEEEEEcccEEEEEccccccccccccHHHcccccHHHHHHHHHcccEEEEEEcccccccccccHHHHHHHHHHHHHHccccEEEEEEEcccccccccccHHHHHHHHccccccEccccEEEEcccccccccccccccccccHHHHHHHHHccccccccHHHHccccccccccccccccccccccccccccccccccccEEEEEEccccccHHHHHHHHccccccEEEEccccccHHHHHHHHHHHHccEEEEEccccccccEHHHcccccccEEEEcHcHcccHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHHccccEEEEEEEccHHHHHHccc
Coil and Loop (DISEMBL)
mkgswdivdngklLVFTSndvcnsakiasfdldgtlittksgkvfpvdthdWKLLFSNIESVLKQYLDDGYKLVIFTnqgaigrkkmsTRDFQAKAEKIIKSLNVPVQMFVatqydryrkpvpgmweylsqekngdlaidisqsfyagdaagraanwapkkkkdfactDHLFAFnlnlafftpeqiflnekapdfpnlptfkprevYQKAQsqtipniphdkKQVLIMIgsqgsgkssfvstylkplnyttvnrdtlGSWQKCVSVMKAALDSVLIMIgsqgsgkssfvstylkplnyttvnrdtlGSWQKCVSVMKAALDSGLSvvvdntnpdkesRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK
Flexible Loop (DISEMBL)
mkgswdivdngKLLVFTSNDVCNSAKIasfdldgtlitTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFtnqgaigrkkmSTRDFQAKAEKiikslnvpvqMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPEQIFLNEKAPDFPNLPTFKPREVYQKAQSqtipniphdKKQVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNiskehakhnik
Low Complexity Region (SEG)
MKGSWDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYagdaagraanwaPKKKKDFACTDHlfafnlnlaffTPEQIFLNEKAPDFPNLPTFKPREVYQKAQSQTIPNIPHDKKQVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK
Disordered region (IsUnstruct)
****WDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPEQIFLNEKAPDFPNLPTF*********************KQVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVD**********RYIEAAKQHGVRCIAVHMNI**********
Disordered Region (DISOPRED)
**GSWDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPEQIFLNEKAPDFPNLPTFKPREV*****************QVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN**
Disordered Region (DISEMBL)
MKGSWDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPEQIFLNEKAPDFPNLPTFKPREVYQKAQSQTIPNIPHDKKQVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISK********
Disordered Region (DISPRO)
*KGSWDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANW**KKKKDFACTDHLFAFNLNLAFFTPEQIFLNEKAPDFPNLPTFKPREVYQKAQSQTIPNIPHDKKQVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAK****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKGSWDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPEQIFLNEKAPDFPNLPTFKPREVYQKAQSQTIPNIPHDKKQVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	369	2.2.26 [Sep-21-2011]
Q96T60	521	Bifunctional polynucleoti	yes	N/A	0.826	0.585	0.416	4e-75
Q9JLV6	522	Bifunctional polynucleoti	yes	N/A	0.815	0.576	0.417	3e-74
Q19683	407	Uncharacterized protein F	yes	N/A	0.856	0.776	0.375	6e-66
O13911	408	Bifunctional polynucleoti	yes	N/A	0.813	0.735	0.317	2e-40
Q5UQD2	421	Putative bifunctional pol	N/A	N/A	0.772	0.676	0.308	7e-34
P21286	182	Uncharacterized 20.8 kDa	N/A	N/A	0.452	0.917	0.419	3e-29
Q84JE8	694	Polynucleotide 3'-phospha	yes	N/A	0.444	0.236	0.376	1e-23
Q03796	238	Polynucleotide 3'-phospha	yes	N/A	0.414	0.642	0.247	1e-06
Q7VL21	182	D,D-heptose 1,7-bisphosph	yes	N/A	0.306	0.620	0.338	0.0008

>sp|Q96T60|PNKP_HUMAN Bifunctional polynucleotide phosphatase/kinase OS=Homo sapiens GN=PNKP PE=1 SV=1

 Score =  282 bits (721), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 150/360 (41%), Positives = 196/360 (54%), Gaps = 55/360 (15%)

Query: 12  KLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGY 71
           KLLVFT+  V    K+A FDLDGTLITT+SGKVFP    DW++L+  I   L++   +GY
Sbjct: 152 KLLVFTAAGVKPQGKVAGFDLDGTLITTRSGKVFPTGPSDWRILYPEIPRKLRELEAEGY 211

Query: 72  KLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQ 131
           KLVIFTNQ +IGR K+   +F+AK E +++ L VP Q+ VAT    YRKPV GMW++L +
Sbjct: 212 KLVIFTNQMSIGRGKLPAEEFKAKVEAVVEKLGVPFQVLVATHAGLYRKPVTGMWDHLQE 271

Query: 132 EKNGDLAIDISQSFYAGDAAGRAANWAP-KKKKDFACTDHLFAFNLNLAFFTPEQIFLNE 190
           + N    I I  S + GDAAGR ANWAP +KKKDF+C D LFA NL L F TPE+ FL  
Sbjct: 272 QANDGTPISIGDSIFVGDAAGRPANWAPGRKKKDFSCADRLFALNLGLPFATPEEFFLKW 331

Query: 191 KAPDFPNLPTFKPREVYQKAQSQTIPN---IPHDKKQVLIMIGSQGSGKSSFVSTYLKPL 247
            A  F  LP F PR V  ++    +P    +     +V++ +G  G+GKS+F+  +L   
Sbjct: 332 PAAGF-ELPAFDPRTV-SRSGPLCLPESRALLSASPEVVVAVGFPGAGKSTFLKKHLVSA 389

Query: 248 NYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG 307
            Y  VNRDTLGSWQ+CV+  + A                                     
Sbjct: 390 GYVHVNRDTLGSWQRCVTTCETA------------------------------------- 412

Query: 308 SWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367
                       L  G  V +DNTNPD  SR RY++ A+  GV C       + E A+HN
Sbjct: 413 ------------LKQGKRVAIDNTNPDAASRARYVQCARAAGVPCRCFLFTATLEQARHN 460

Catalyzes the phosphorylation of DNA at 5'-hydroxyl termini and can dephosphorylate its 3'-phosphate termini. Plays an important function in DNA repair following ionizing radiation or oxidative damage.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 7EC: 8

>sp|Q9JLV6|PNKP_MOUSE Bifunctional polynucleotide phosphatase/kinase OS=Mus musculus GN=Pnkp PE=1 SV=2

 Score =  278 bits (712), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 152/364 (41%), Positives = 198/364 (54%), Gaps = 63/364 (17%)

Query: 12  KLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGY 71
           KLLVFT++ V    K+A+FDLDGTLITT+SGKVFP    DW++L+  I   L++   +GY
Sbjct: 151 KLLVFTASGVKPQGKVAAFDLDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGY 210

Query: 72  KLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQ 131
           KLVIFTNQ  IGR K+    F+ K E +++ L VP Q+ VAT     RKPV GMW++L +
Sbjct: 211 KLVIFTNQMGIGRGKLPAEVFKGKVEAVLEKLGVPFQVLVATHAGLNRKPVSGMWDHLQE 270

Query: 132 EKNGDLAIDISQSFYAGDAAGRAANWAP-KKKKDFACTDHLFAFNLNLAFFTPEQIFLNE 190
           + N  + I +  S + GDAAGR ANWAP +KKKDF+C D LFA N+ L F TPE+ FL  
Sbjct: 271 QANEGIPISVEDSVFVGDAAGRLANWAPGRKKKDFSCADRLFALNVGLPFATPEEFFLKW 330

Query: 191 KAPDFPNLPTFKPREV-------YQKAQSQTIPNIPHDKKQVLIMIGSQGSGKSSFVSTY 243
            A  F  LP F PR +         ++ S   PN      +V++ +G  G+GKS+F+  +
Sbjct: 331 PAARF-ELPAFDPRTISSAGPLYLPESSSLLSPN-----PEVVVAVGFPGAGKSTFIQEH 384

Query: 244 LKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNR 303
           L    Y  VNRDTLGSWQ+CVS  +AA                                 
Sbjct: 385 LVSAGYVHVNRDTLGSWQRCVSSCQAA--------------------------------- 411

Query: 304 DTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEH 363
                           L  G  VV+DNTNPD  SR RYI+ AK  GV C   +   + E 
Sbjct: 412 ----------------LRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQ 455

Query: 364 AKHN 367
           A+HN
Sbjct: 456 ARHN 459

Catalyzes the phosphorylation of DNA at 5'-hydroxyl termini and can dephosphorylate its 3'-phosphate termini. Plays an important function in DNA repair following ionizing radiation or oxidative damage.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 8

>sp|Q19683|YZR5_CAEEL Uncharacterized protein F21D5.5 OS=Caenorhabditis elegans GN=F21D5.5 PE=2 SV=2

 Score =  251 bits (641), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 139/370 (37%), Positives = 200/370 (54%), Gaps = 54/370 (14%)

Query: 3   GSWDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESV 62
           GSW+  DNG L++FT ++     KIA+FD+DGTLI TKSGKVFP +  DW+LL+ +I S 
Sbjct: 29  GSWESKDNGDLMIFTHSECEGKEKIAAFDMDGTLIKTKSGKVFPTNCQDWQLLYDSIPSD 88

Query: 63  LKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPV 122
            K+   DG+K+VIFTNQ  I   K+   +F+ K E I+  L +PVQ FV+     YRKP 
Sbjct: 89  FKKLHSDGFKIVIFTNQKGIHAGKVDRNEFRKKIEAIVGKLGIPVQAFVSVAGGHYRKPC 148

Query: 123 PGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT 182
            GMW  L + +N ++ I+  +S + GDAAGR    + + KKD +  D  FA N+ + F T
Sbjct: 149 VGMWNEL-KLRNDEVEINEKESIFVGDAAGRIKTTS-RPKKDHSYADRFFAANVGVKFQT 206

Query: 183 PEQIFLNEKAPDFPNLPTFKPREVYQKAQSQTIPN---IPHDKKQVLIMIGSQGSGKSSF 239
           PE+ F   K  +    P F P+ ++ +  ++  P+   +   +K++++M+G  GSGKS+F
Sbjct: 207 PEEFFGKSKVDEPWGPPNFDPKNLFSEEITELEPHDAQLKSSEKEIILMVGFPGSGKSTF 266

Query: 240 VSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYT 299
                   +Y  VNRDT+G+WQKCV+  +                               
Sbjct: 267 AKMLGHQHDYKIVNRDTIGTWQKCVAATR------------------------------- 295

Query: 300 TVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNI 359
                             + L  G SVV+DNT+PD ESR RYI+ AK+ GV      MN 
Sbjct: 296 ------------------SYLADGKSVVIDNTSPDLESRKRYIDVAKELGVPIRCFEMNC 337

Query: 360 SKEHAKHNIK 369
           S EHA+HNI+
Sbjct: 338 SMEHAQHNIR 347

Caenorhabditis elegans (taxid: 6239)

>sp|O13911|PNK1_SCHPO Bifunctional polynucleotide phosphatase/kinase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pnk1 PE=1 SV=2

 Score =  167 bits (422), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 116/365 (31%), Positives = 172/365 (47%), Gaps = 65/365 (17%)

Query: 5   WDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLK 64
           W I D+  L +     +  + K  +FDLDGTLI TKSG+VF  D  DW     ++   LK
Sbjct: 50  WSITDS--LYIAKYGKLKKTKKFIAFDLDGTLIKTKSGRVFSKDAADWTWWHPSVVPKLK 107

Query: 65  QYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPG 124
               D Y LVIF+NQ  I RK  +   FQ K   I +SL++P+ ++ A   D++RKP+ G
Sbjct: 108 ALYQDNYSLVIFSNQNGIPRKPSAGHTFQMKIRAIFESLDLPIVLYAAILKDKFRKPLTG 167

Query: 125 MWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPE 184
           MW    ++ N   +ID+S   Y GDAAGR          D   TD  FA N+ + F TPE
Sbjct: 168 MWNSFLKDVNR--SIDLSFIKYVGDAAGRPG--------DHNSTDLKFAENIGIKFETPE 217

Query: 185 QIFLNEK-APDFPNLPTFKPRE-VYQKAQSQTIPNIPHDKKQVLIMIGSQGSGKSSFVST 242
           Q FL     P  PN  +F P+  + + + S        + +++++++G   SGKS+   +
Sbjct: 218 QFFLGHSFVP--PNFESFHPKNYLVRNSSSHPYHFKKSEHQEIVVLVGFPSSGKSTLAES 275

Query: 243 YLKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVN 302
            +    Y  VN+D L +  KC+   KAA++                              
Sbjct: 276 QIVTQGYERVNQDILKTKSKCI---KAAIE------------------------------ 302

Query: 303 RDTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKE 362
                           AL    SVV+DNTNP  ESR  +I+ A++  +    +H+  S+E
Sbjct: 303 ----------------ALKKEKSVVIDNTNPTIESRKMWIDIAQEFEIPIRCIHLQSSEE 346

Query: 363 HAKHN 367
            A+HN
Sbjct: 347 LARHN 351

Catalyzes the phosphorylation of DNA at 5'-hydroxyl termini and can dephosphorylate its 3'-phosphate termini. Has a role in the repair of breaks in single stranded DNA.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 8

>sp|Q5UQD2|PNKP_MIMIV Putative bifunctional polynucleotide phosphatase/kinase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L469 PE=3 SV=1

 Score =  145 bits (365), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 114/369 (30%), Positives = 169/369 (45%), Gaps = 84/369 (22%)

Query: 25  AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGR 84
            ++ASFDLD TLI  +S K     T  WKL+ S+I+  + + +++ Y +++FTNQG +  
Sbjct: 42  VRVASFDLDDTLIV-RSKK-----TQKWKLVDSSIKQKIAELIENKYIIIVFTNQGGMSL 95

Query: 85  KKMSTRDFQAKA-EKIIKSLNVPVQ------MFVATQYDRYRKPVPGMWEYLSQEKNGDL 137
            K   +    KA + ++K L           ++VA +YD YRKP  G+W  + Q+   + 
Sbjct: 96  NKKFDKPLWRKAMDDLVKILTSETDNDFYFAIYVAKKYDIYRKPNIGLWNLMKQDIKDEF 155

Query: 138 AIDISQ----SFYAGDAAGRAANWAPKKK-------KDFACTDHLFAFNLNLAFFTPEQI 186
            +D  Q    SF+ GDAAGR      KKK        DF+ TD  FA N+ + F TPE+ 
Sbjct: 156 NLDSVQISTKSFFCGDAAGRIYPSMFKKKLYPTSKGGDFSDTDRKFALNIGIKFLTPEEF 215

Query: 187 FLNEKAPDFPNLPT------FKPREVYQKAQSQTIPNIPHD--KKQVLIMIGSQGSGKSS 238
           +L+ K  +  NL T        P E+  + ++  + N      KK++++MIG  GSGKS 
Sbjct: 216 YLDSKNSE--NLKTNYKLSGVNPTEIIDEIENTKLVNYKFKPRKKEMIVMIGQPGSGKSF 273

Query: 239 FVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNY 298
           FV  Y+ P  Y  +N+D   +  KC+S  + A                            
Sbjct: 274 FVKNYILPNGYVHINQDKCKTKAKCLSETENA---------------------------- 305

Query: 299 TTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCI-AVHM 357
                                L  G SVV+DNTNPD  SR  Y   AK++    + A+ M
Sbjct: 306 ---------------------LSKGKSVVIDNTNPDVISRMTYTNLAKENNYDHVRAIIM 344

Query: 358 NISKEHAKH 366
               E AKH
Sbjct: 345 ETPDELAKH 353

Acanthamoeba polyphaga (taxid: 5757)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 7

EC: 8

>sp|P21286|Y033_NPVAC Uncharacterized 20.8 kDa protein in FGF-VUBI intergenic region OS=Autographa californica nuclear polyhedrosis virus PE=3 SV=2

 Score =  129 bits (325), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 73/174 (41%), Positives = 101/174 (58%), Gaps = 7/174 (4%)

Query: 13  LLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYK 72
           L  +  +D     KIA+FDLDGTLI++K+   FP +  DW+LL       LK+  + GY 
Sbjct: 9   LYAYAVHDGAKRTKIAAFDLDGTLISSKTRSKFPKNPDDWQLL--PCAHKLKRLYELGYD 66

Query: 73  LVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQE 132
           LV+FTNQ  +G  K+   D   K E I K+  VP+  +V+   D +RKP  GMW  ++++
Sbjct: 67  LVVFTNQAHLGSGKIKASDLLYKLENIKKATGVPISFYVSPNKDEHRKPDTGMWREMAKQ 126

Query: 133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPEQI 186
                 ID  QSFY GDAAGR        +KDF+ +D +FA NL+L F+TPEQ 
Sbjct: 127 FT---HIDKEQSFYVGDAAGRIN--LTTGQKDFSDSDRVFAKNLSLQFYTPEQF 175

Lepidoptera (taxid: 7088)

>sp|Q84JE8|ZDP_ARATH Polynucleotide 3'-phosphatase ZDP OS=Arabidopsis thaliana GN=ZDP PE=1 SV=1

 Score =  111 bits (277), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/191 (37%), Positives = 101/191 (52%), Gaps = 27/191 (14%)

Query: 14  LVFTSND--VCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGY 71
           ++F   D  + +S KIA+FD DG L  T S K+   D   W L++ +I   L+   D GY
Sbjct: 507 VIFLERDDGLNDSEKIAAFDFDGCLAKT-SVKIVGADA--WSLMYPSIPEKLQSLHDQGY 563

Query: 72  KLVIFTNQGAIGR---KKMSTRDFQ-AKAEKIIKSLNVPVQMFVATQY----------DR 117
           KLVIFTN+  I R   K+ +  D +  +    I+ + VP+Q+F+A             D 
Sbjct: 564 KLVIFTNESNIDRWKNKRQAAVDSKIGRLNSFIERVKVPIQVFIACGVSSSGGKGGKDDL 623

Query: 118 YRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLN 177
           YRKP  GMW+ + +  N  +AID+ +SFY GDAAGR        K D +  D  FA    
Sbjct: 624 YRKPKAGMWQLMKKHFNSGIAIDMDKSFYVGDAAGR--------KMDHSDADIKFAQASG 675

Query: 178 LAFFTPEQIFL 188
           L FFTPE+ F+
Sbjct: 676 LKFFTPEEYFI 686

Nick-sensing 3'-phosphoesterase involved in a base excision repair pathway required for active DNA demethylation. The N-terminal DNA-binding domain binds specifically to gap sites and sharply bends the target DNA. Lacks 5'-kinase activity but is capable of 3'-phosphoglycolate end processing. Inactive on 3'-alpha,beta-unsaturated aldehyde (3'-dRP). Protects partially genes from transcriptional silencing by preventing promoter DNA hypermethylation.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 3

EC: 2

>sp|Q03796|TPP1_YEAST Polynucleotide 3'-phosphatase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TPP1 PE=3 SV=1

 Score = 54.3 bits (129), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 53/214 (24%), Positives = 89/214 (41%), Gaps = 61/214 (28%)

Query: 27  IASFDLDGTLITTKSGKV-FPVDTHDWKLLFSNIESVLKQYL------DDGYKLVIFTNQ 79
           + +FDLD T+I  KS  + F     DW+ +  N +     YL      D    +VIF+NQ
Sbjct: 31  VYAFDLDHTIIKPKSPNISFSRSASDWQFINFNSKKSTLDYLCNIIDNDPTAVIVIFSNQ 90

Query: 80  GAIGRKKMSTRDFQAKAEKII------------KSLNVPVQMFVATQ------------- 114
           G +     +++       KI+            ++L+  + ++ A +             
Sbjct: 91  GGVITVPRTSKSCTKYTNKILLFLKAIKNDERGETLSHRLWLYAAPKRPKTFAANHSKIT 150

Query: 115 --------------YDRYRKPVPGMWEYLSQEKNGDL-------AIDISQSFYAGDAAGR 153
                         +++ RKP+ GM E+  ++             I ++  +Y GDAAGR
Sbjct: 151 FASLGESYNNDPNIFEKVRKPMTGMVEFFKRDLESAYRVSEQISPIKLNWIYYCGDAAGR 210

Query: 154 AANWAPKKKKDFACTDHLFAFNLNLAFFTPEQIF 187
                   KKDF+ +D  FA NL++ F  PE+IF
Sbjct: 211 --------KKDFSDSDIKFAENLHVEFKYPEEIF 236

Dephosphorylate DNA's 3'-phosphate termini. Has a role in the repair of breaks in single stranded DNA.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 3

EC: 2

>sp|Q7VL21|GMHB_HAEDU D,D-heptose 1,7-bisphosphate phosphatase OS=Haemophilus ducreyi (strain 35000HP / ATCC 700724) GN=gmhB PE=3 SV=1

 Score = 45.1 bits (105), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 48/142 (33%), Positives = 59/142 (41%), Gaps = 29/142 (20%)

Query: 26  KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESV---LKQYLDDGYKLVIFTNQGAI 82
           K    D DGTL     G V  +D       F  IE V   LKQ  D GY LV+ TNQ  I
Sbjct: 4   KAVFLDRDGTL-NIDHGYVHQIDD------FQFIEGVGKALKQLQDKGYLLVLVTNQSGI 56

Query: 83  GRKKMSTRDFQAKAEKIIKSLN-----VPVQMFVATQYDR----------YRKPVPGMWE 127
            R   S + FQ   E +  SL+     V   ++    Y             RKP  GM+ 
Sbjct: 57  ARGYFSEQQFQQLTEWMDWSLDEDYGVVLDGIYYCPHYPEGQGEYQQKCDCRKPKAGMF- 115

Query: 128 YLSQEKNGDLAIDISQSFYAGD 149
              Q+   DL ID +QS+  GD
Sbjct: 116 ---QQAIKDLNIDPAQSYMVGD 134

Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate by removing the phosphate group at the C-7 position.

Haemophilus ducreyi (strain 35000HP / ATCC 700724) (taxid: 233412)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	369
219911527	570	polynucleotide kinase-3'-phosphatase [Ni	0.853	0.552	0.457	4e-84
346468451	592	hypothetical protein [Amblyomma maculatu	0.894	0.557	0.414	6e-82
327275951	568	PREDICTED: bifunctional polynucleotide p	0.850	0.552	0.447	5e-80
427789125	593	hypothetical protein [Rhipicephalus pulc	0.891	0.554	0.404	8e-79
156360649	340	predicted protein [Nematostella vectensi	0.831	0.902	0.441	1e-78
427778079	619	hypothetical protein [Rhipicephalus pulc	0.891	0.531	0.404	1e-78
117606151	586	bifunctional polynucleotide phosphatase/	0.831	0.523	0.430	8e-78
442762141	552	Putative polynucleotide kinase 3' phosph	0.859	0.574	0.394	6e-77
432894949	602	PREDICTED: bifunctional polynucleotide p	0.831	0.509	0.436	2e-75
395858312	521	PREDICTED: bifunctional polynucleotide p	0.853	0.604	0.421	4e-75

>gi|219911527|emb|CAX11689.1| polynucleotide kinase-3'-phosphatase [Nilaparvata lugens]

 Score =  318 bits (814), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 167/365 (45%), Positives = 218/365 (59%), Gaps = 50/365 (13%)

Query: 5   WDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLK 64
           W+ +D GKLL+++   + +S+KIAS+D+DGT+I TKSGKVFPVD +DWKL    ++S LK
Sbjct: 195 WESIDQGKLLIYSVKGLRSSSKIASYDMDGTIILTKSGKVFPVDKNDWKLFSPAVKSQLK 254

Query: 65  QYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPG 124
           +  DD +K+VIFTNQ  I R K    DF+ K EKI  +L+VPVQ+FVAT  D+YRKPVPG
Sbjct: 255 KLHDDNFKIVIFTNQAGISRGKTKVDDFKYKVEKITSALDVPVQVFVATSEDKYRKPVPG 314

Query: 125 MWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPE 184
           MWE L Q+KN  L    S SF+ GDAAGR  +WAPKKKKDF+C D LFA N+ + F+TP+
Sbjct: 315 MWEVLIQKKNDGLDYSESDSFFVGDAAGRVESWAPKKKKDFSCADRLFALNVGIKFYTPD 374

Query: 185 QIFLNEKAPDFPNLPTFKPREVYQKAQSQTIPNIPHDKKQVLIMIGSQGSGKSSFVSTYL 244
             FL      F  LP F P +++      T   I    K+V++M+GS GSGKS F ++YL
Sbjct: 375 AHFLKLPEGKFA-LPGFNPSQLFSNNALITDKEILSKTKEVVVMVGSPGSGKSFFANSYL 433

Query: 245 KPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRD 304
               Y+ VNRDTLGSWQKCVS M++A                                  
Sbjct: 434 VKAGYSCVNRDTLGSWQKCVSSMESA---------------------------------- 459

Query: 305 TLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHA 364
                          L +G SVVVDNTNPD+E+R RYI+ A +  + C    M+ + EHA
Sbjct: 460 ---------------LHAGNSVVVDNTNPDQETRKRYIDVAAKLNISCRCFLMSTTLEHA 504

Query: 365 KHNIK 369
           + N K
Sbjct: 505 RRNNK 509

Source: Nilaparvata lugens

Species: Nilaparvata lugens

Genus: Nilaparvata

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|346468451|gb|AEO34070.1| hypothetical protein [Amblyomma maculatum]

 Score =  310 bits (795), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 152/367 (41%), Positives = 217/367 (59%), Gaps = 37/367 (10%)

Query: 1   MKGSWDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIE 60
           +K  W  + +  +L+F S+ + +  KIA+FDLDGTLITTKSGKVFPV++HDW++L    E
Sbjct: 198 VKSGWTELRDHNVLMFNSDRLEHKPKIAAFDLDGTLITTKSGKVFPVNSHDWRILLPQCE 257

Query: 61  SVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRK 120
           + L+  +++GYKLVI TNQ  + +      DF+AK E I+K L VP Q++V+  +  YRK
Sbjct: 258 ARLRSLIEEGYKLVIITNQRGLAKSHSHEADFKAKVEHILKKLAVPAQVYVSVGHGFYRK 317

Query: 121 PVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF 180
           P PG+W +L    NG + I + +SFY GDAAGR ANW PK+KKDF+C+D LFA N+ + F
Sbjct: 318 PAPGIWHHLEAVANGGIPITLEESFYVGDAAGRPANWEPKRKKDFSCSDRLFALNIGITF 377

Query: 181 FTPEQIFLNEKAPDFPNLPTFKPREVYQKAQSQTIPNIPHDKKQVLIMIGSQGSGKSSFV 240
           ++PE+ FL      F  LP+F PR+V         P++P     +  ++ +    +S ++
Sbjct: 378 YSPEEFFLKRPVAKF-ELPSFDPRQV---------PDVP-----LAEIVATASPNRSKYL 422

Query: 241 STYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTT 300
           ++   P  +T                       V++++G   SGKS F   YL    Y  
Sbjct: 423 NSDDLPAGHT----------------------EVVVLVGYPASGKSHFAKEYLVSKQYAH 460

Query: 301 VNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNIS 360
           +NRD L SWQKCV   + AL+ G S V+DNTNPD ESR R+I+ AK+HG  C     + S
Sbjct: 461 INRDMLKSWQKCVEECEKALERGWSAVIDNTNPDPESRKRFIDVAKKHGRECRCFVFDCS 520

Query: 361 KEHAKHN 367
            E AKHN
Sbjct: 521 LERAKHN 527

Source: Amblyomma maculatum

Species: Amblyomma maculatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|327275951|ref|XP_003222735.1| PREDICTED: bifunctional polynucleotide phosphatase/kinase-like [Anolis carolinensis]

 Score =  304 bits (778), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 165/369 (44%), Positives = 214/369 (57%), Gaps = 55/369 (14%)

Query: 2   KGSWDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIES 61
           + SW+  D+GKLLVFT   V  S+K+A FDLDGTLITT+SGKVFP    DW++L+  +  
Sbjct: 190 RDSWE--DHGKLLVFTKKGVVPSSKVAGFDLDGTLITTQSGKVFPTSPDDWRILYPEVPR 247

Query: 62  VLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKP 121
            LKQ   +GYKLVIFTNQ  I R ++    F++KAE +I+ L VP+Q+FVAT    YRKP
Sbjct: 248 KLKQLQSEGYKLVIFTNQMGISRGRLRPEVFKSKAEAVIERLGVPLQVFVATGAGIYRKP 307

Query: 122 VPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAP-KKKKDFACTDHLFAFNLNLAF 180
           V GMW++L ++ NG LAI + QS Y GDAAGR ANWAP  KKKDF+C+D LFA N+ L F
Sbjct: 308 VLGMWDHLCEKANGGLAISLQQSVYVGDAAGRPANWAPGHKKKDFSCSDRLFALNVGLPF 367

Query: 181 FTPEQIFLNEKAPDFPNLPTFKPREVYQKAQSQTIPN--IPHDKKQVLIMIGSQGSGKSS 238
           +TPE+ FL  K   F  LP F PR +  KA+    P   +     ++++ +G   +GKS+
Sbjct: 368 YTPEEYFLGWKKAPF-VLPNFDPRTLDPKARLYDPPEACLTSSSSELVVAVGFPAAGKST 426

Query: 239 FVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNY 298
           F+  +L  + Y   NRDTLGSWQKCV++ +A+L                           
Sbjct: 427 FLKKHLVSVGYVHSNRDTLGSWQKCVAMCQASL--------------------------- 459

Query: 299 TTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMN 358
                                  +G  VVVDNTNPD ESR R+IE AK+ GV C      
Sbjct: 460 ----------------------QAGKRVVVDNTNPDLESRQRFIECAKEAGVPCRCFLFT 497

Query: 359 ISKEHAKHN 367
            S E AKHN
Sbjct: 498 ASLEQAKHN 506

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|427789125|gb|JAA60014.1| hypothetical protein [Rhipicephalus pulchellus]

 Score =  300 bits (768), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 148/366 (40%), Positives = 212/366 (57%), Gaps = 37/366 (10%)

Query: 2   KGSWDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIES 61
           K  W  +    +L+F S  + +  KIA+FDLDGTLITTKSGKVFPV++ DW++L S   +
Sbjct: 200 KSGWTDLTQHHVLMFNSEKLEHKPKIAAFDLDGTLITTKSGKVFPVNSADWRILLSETAA 259

Query: 62  VLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKP 121
            L   +++GYK+VI TNQ  + + K    DF+ K E+++K+L VP Q++V+  +  YRKP
Sbjct: 260 RLHSLVEEGYKIVIITNQRGLAKSKSHEADFKNKVERVLKTLAVPAQVYVSVGHGFYRKP 319

Query: 122 VPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF 181
            PG+W +L    NG + ID+ +SFY GDAAGR ANW PK+KKDF+C+D LFA N+ + F+
Sbjct: 320 APGIWHHLESHGNGGVPIDLKESFYVGDAAGRPANWEPKRKKDFSCSDRLFALNIGITFY 379

Query: 182 TPEQIFLNEKAPDFPNLPTFKPREVYQKAQSQTIPNIPHDKKQVLIMIGSQGSGKSSFVS 241
           TPE+ FL   A  F +LP F PR          +P +P     +  ++ S    +  F++
Sbjct: 380 TPEEFFLKRPAAKF-DLPQFDPR---------AVPGLP-----LAEVVASTKPSEDKFLN 424

Query: 242 TYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTV 301
               P ++T                       V++++G   SGKS F   YL    Y  +
Sbjct: 425 GDDLPADHT----------------------EVVVLVGYPASGKSHFAKEYLVSKQYAHI 462

Query: 302 NRDTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISK 361
           NRD L S QKC+   + AL  G S V+DNTNPD ESR R+++ A++HG  C    M+ + 
Sbjct: 463 NRDMLKSAQKCIEECEKALRRGQSAVIDNTNPDPESRKRFVDIARKHGCECRCFVMDCTL 522

Query: 362 EHAKHN 367
           E AKHN
Sbjct: 523 ERAKHN 528

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156360649|ref|XP_001625139.1| predicted protein [Nematostella vectensis] gi|156211956|gb|EDO33039.1| predicted protein [Nematostella vectensis]

 Score =  299 bits (766), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 159/360 (44%), Positives = 206/360 (57%), Gaps = 53/360 (14%)

Query: 11  GKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDG 70
           G+LLVFTS  V    KIA FDLDGT+ITTKSGKVFP +T DW ++F  I   LKQ   DG
Sbjct: 6   GELLVFTSKGVEGRKKIAGFDLDGTIITTKSGKVFPTNTADWTIIFPQIPGKLKQLWRDG 65

Query: 71  YKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLS 130
           YK+V FTNQ  I +KK+S  DF+ K ++I+  L VP Q+ ++     YRKP  GMW+YL 
Sbjct: 66  YKIVFFTNQNGIAKKKVSVPDFKVKIQRILDLLGVPTQVLISPGTGHYRKPCTGMWKYLL 125

Query: 131 QEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPEQIFLNE 190
           ++ N  + ++  +  Y GDAAGR  NW  KKKKDF+C+D  FA  +++ F+TPE+ FL +
Sbjct: 126 EKANQSVPVNKEECMYIGDAAGRPVNWETKKKKDFSCSDRTFAAKIDIKFYTPEEFFLGK 185

Query: 191 KAPDFPNLPTFKPREVYQKAQSQTIP---NIPHDKKQVLIMIGSQGSGKSSFVSTYLKPL 247
           K   F N P F PR++    +    P   N+  +  ++++M+GS GSGK++F   YL P 
Sbjct: 186 KPAPF-NWPVFNPRKLLDGDRPLFTPTSSNLTSNTPELIVMVGSPGSGKTTFAKEYLVPK 244

Query: 248 NYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG 307
            YT +NRDTLG+WQKCVS  +AAL        SQG                         
Sbjct: 245 GYTRINRDTLGTWQKCVSACRAAL--------SQGK------------------------ 272

Query: 308 SWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367
                             VVVDNTNPD+ESR RYIE AK   V      M+IS EHAKHN
Sbjct: 273 -----------------HVVVDNTNPDQESRKRYIECAKHAKVPVRCFVMDISLEHAKHN 315

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|427778079|gb|JAA54491.1| hypothetical protein [Rhipicephalus pulchellus]

 Score =  299 bits (765), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 148/366 (40%), Positives = 211/366 (57%), Gaps = 37/366 (10%)

Query: 2   KGSWDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIES 61
           K  W  +    +L+F S  + +  KIA+FDLDGTLITTKSGKVFPV++ DW++L S   +
Sbjct: 226 KSGWTDMTQHHVLMFNSEKLEHKPKIAAFDLDGTLITTKSGKVFPVNSADWRILLSETAA 285

Query: 62  VLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKP 121
            L   +++GYK+VI TNQ  + + K    DF+ K E+++K+L VP Q++V+  +  YRKP
Sbjct: 286 RLHSLVEEGYKIVIITNQRGLAKSKSHEADFKNKVERVLKTLAVPAQVYVSVGHGFYRKP 345

Query: 122 VPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF 181
            PG+W +L    NG + ID+ +SFY GDAAGR ANW PK+KKDF+C+D LFA N+ + F+
Sbjct: 346 APGIWHHLESHGNGGVPIDLKESFYVGDAAGRPANWEPKRKKDFSCSDRLFALNIGITFY 405

Query: 182 TPEQIFLNEKAPDFPNLPTFKPREVYQKAQSQTIPNIPHDKKQVLIMIGSQGSGKSSFVS 241
           TPE+ FL   A  F +LP F PR          +P +P     +  ++ S    +  F++
Sbjct: 406 TPEEFFLKRPAAKF-DLPQFDPR---------AVPGLP-----LAEVVASTKPSEDKFLN 450

Query: 242 TYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTV 301
               P  +T                       V++++G   SGKS F   YL    Y  +
Sbjct: 451 GDDLPAGHT----------------------EVVVLVGYPASGKSHFAKEYLVSKQYAHI 488

Query: 302 NRDTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISK 361
           NRD L S QKC+   + AL  G S V+DNTNPD ESR R+++ A++HG  C    M+ + 
Sbjct: 489 NRDMLKSAQKCIEECEKALRRGQSAVIDNTNPDPESRKRFVDIARKHGCECRCFVMDCTL 548

Query: 362 EHAKHN 367
           E AKHN
Sbjct: 549 ERAKHN 554

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|117606151|ref|NP_001071046.1| bifunctional polynucleotide phosphatase/kinase [Danio rerio] gi|115527807|gb|AAI24635.1| Zgc:153084 [Danio rerio]

 Score =  296 bits (759), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 155/360 (43%), Positives = 210/360 (58%), Gaps = 53/360 (14%)

Query: 11  GKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDG 70
           G L++FT+  V  S+KIA FD+DG +ITTKSGKVFP    DW++L+  I+  L   L  G
Sbjct: 213 GSLMLFTAAGVTASSKIAGFDIDGCIITTKSGKVFPTGPDDWRILYPEIQPKLASLLKKG 272

Query: 71  YKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLS 130
           YK+V FTNQ  I R K+    F++KAE I+++L +P+Q+FV+T    YRKPV GMWE+L 
Sbjct: 273 YKVVFFTNQMGISRGKLRPEVFKSKAEDILQTLQLPIQVFVSTAPGIYRKPVIGMWEHLC 332

Query: 131 QEKNGDLAIDISQSFYAGDAAGRAANWAP-KKKKDFACTDHLFAFNLNLAFFTPEQIFLN 189
           ++ N  + +D+S+SFY GDAAGR ANWAP KKKKDF+C+D LFA N+ L F+TPE+ FL 
Sbjct: 333 EKANSGVMVDVSESFYVGDAAGRPANWAPGKKKKDFSCSDRLFALNIGLQFYTPEEYFLG 392

Query: 190 EKAPDFPNLPTFKPREVYQKAQSQTIPN--IPHDKKQVLIMIGSQGSGKSSFVSTYLKPL 247
            K   F + P F PR++  KA+    P+  +   K+++++ +G  G+GKS+F  T++ P 
Sbjct: 393 WKPATF-SFPEFDPRKLDSKARLYDPPDASLTSTKQEIIVAVGFPGAGKSTFFQTHIIPK 451

Query: 248 NYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG 307
            Y  VNRDT+GSWQ CVS  + A                                     
Sbjct: 452 GYAYVNRDTMGSWQHCVSACERA------------------------------------- 474

Query: 308 SWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367
                       L  G SV VDNTNPD ESR RYI+ A+  GV C   +   S + AKHN
Sbjct: 475 ------------LKEGKSVAVDNTNPDLESRKRYIDVAQSAGVSCRCFNFTASLDQAKHN 522

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|442762141|gb|JAA73229.1| Putative polynucleotide kinase 3' phosphatase, partial [Ixodes ricinus]

 Score =  294 bits (752), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 150/380 (39%), Positives = 217/380 (57%), Gaps = 63/380 (16%)

Query: 1   MKGSWDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIE 60
           +K  W  + + K+L++ S ++ +  KIA+FD+DGTLITTKSGKVFPV++HDW++L   +E
Sbjct: 158 LKPGWTRLSDHKVLLYCSPELKHKPKIAAFDMDGTLITTKSGKVFPVNSHDWRILLPQVE 217

Query: 61  SVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRK 120
           + L+  L DG+K+V+ TNQ  + +      +F++K E I+K L++P Q++V + +  YRK
Sbjct: 218 TKLRSLLADGFKIVVITNQRGLAKSHSHESEFKSKVEHILKRLDIPAQVYVCSGHGFYRK 277

Query: 121 PVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF 180
           P PG+WE+L +  NG++ I++ +SFY GDAAGR ANW PK+KKDF+C+D LFA N+ L F
Sbjct: 278 PAPGVWEHLEKHGNGNVPINMHESFYVGDAAGRPANWEPKRKKDFSCSDRLFALNVGLQF 337

Query: 181 FTPEQIFLNEKAPDFPNLPTFKPREVYQKAQSQTIPNIPHDKK-------------QVLI 227
           +TPE+ FLN  A  F +LP F PR V     ++ I     + K             +V++
Sbjct: 338 YTPEEFFLNRPAVKF-DLPAFDPRVVLDLPLAEVIATRSTNGKKFFGEDELLRTSTEVVV 396

Query: 228 MIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSS 287
           ++G   SGK+ F   YL    Y  +NRDTLGSWQKCVS  + AL           + K S
Sbjct: 397 LVGYPASGKTHFAKKYLVAKQYVHINRDTLGSWQKCVSESENAL-----------AHKRS 445

Query: 288 FVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQ 347
                                                 VV+DNTNPD +SR R+ E A++
Sbjct: 446 --------------------------------------VVIDNTNPDVDSRKRFTELARK 467

Query: 348 HGVRCIAVHMNISKEHAKHN 367
           +G  C    M+ S E AKHN
Sbjct: 468 YGCECRCFVMDCSLERAKHN 487

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|432894949|ref|XP_004076011.1| PREDICTED: bifunctional polynucleotide phosphatase/kinase-like [Oryzias latipes]

 Score =  288 bits (738), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 157/360 (43%), Positives = 202/360 (56%), Gaps = 53/360 (14%)

Query: 11  GKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDG 70
           G LLV+T+  V  S KIA FD+DG +ITTKSGKVFP    DWK+L+  I+  L   L  G
Sbjct: 229 GNLLVYTAAGVTASEKIAGFDIDGCIITTKSGKVFPTAPDDWKILYVEIQPKLSSLLKKG 288

Query: 71  YKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLS 130
           YK+V FTNQ  I + K+    F++K E ++ +L +PVQ+FVA     YRKPV GMW++L 
Sbjct: 289 YKVVFFTNQLGIAKGKLRPEVFKSKVEDVLATLQLPVQVFVAAGPGIYRKPVTGMWDHLC 348

Query: 131 QEKNGDLAIDISQSFYAGDAAGRAANWAP-KKKKDFACTDHLFAFNLNLAFFTPEQIFLN 189
           ++ N  + +D+ QSFY GDAAGR  NWAP KKKKDF+C+D LFA N+ L F TPE+ FL 
Sbjct: 349 EKANDGVTVDLKQSFYVGDAAGRPENWAPGKKKKDFSCSDRLFALNIGLQFHTPEEYFLG 408

Query: 190 EKAPDFPNLPTFKPREVYQKAQSQTIP--NIPHDKKQVLIMIGSQGSGKSSFVSTYLKPL 247
            K   F NLP F PR++   A+    P  ++     +V++ +G   SGKS+F   ++ P 
Sbjct: 409 WKNAPF-NLPDFDPRKLDSAARLYDPPSASLISSLTEVIVAVGYPASGKSTFFHAHVIPK 467

Query: 248 NYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG 307
            Y  VNRDTLGSWQKCV+V + A                                     
Sbjct: 468 GYFYVNRDTLGSWQKCVAVCERA------------------------------------- 490

Query: 308 SWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367
                       L  G SV VDNTNPD ESR RY++ AK  GV C   H + S E AKHN
Sbjct: 491 ------------LSEGRSVAVDNTNPDPESRKRYVDVAKAAGVSCRCFHFSASLEQAKHN 538

Source: Oryzias latipes

Species: Oryzias latipes

Genus: Oryzias

Family: Adrianichthyidae

Order: Beloniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|395858312|ref|XP_003801515.1| PREDICTED: bifunctional polynucleotide phosphatase/kinase [Otolemur garnettii]

 Score =  288 bits (736), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 156/370 (42%), Positives = 203/370 (54%), Gaps = 55/370 (14%)

Query: 2   KGSWDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIES 61
           K S D  + GKLLVFT++ V    K+A FDLDGTLITT+SGKVFP    DW++L+  I  
Sbjct: 142 KSSSDWENFGKLLVFTASGVKPQGKVAGFDLDGTLITTRSGKVFPTGPSDWRILYLEIPR 201

Query: 62  VLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKP 121
            L++   +GYKLVIFTNQ  IGR K+   +F+AK E +++ L VP Q+ VAT    YRKP
Sbjct: 202 KLQELEAEGYKLVIFTNQMGIGRGKLPAEEFKAKVEAVVEKLGVPFQVLVATHAGLYRKP 261

Query: 122 VPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAP-KKKKDFACTDHLFAFNLNLAF 180
           V GMW++L +  N  + I I  S + GDAAGR ANWAP +KKKDF+C D LFA NL L F
Sbjct: 262 VTGMWDHLQERANEGVPISIEDSVFVGDAAGRPANWAPGRKKKDFSCADRLFALNLGLPF 321

Query: 181 FTPEQIFLNEKAPDFPNLPTFKPREVYQKAQSQTIP---NIPHDKKQVLIMIGSQGSGKS 237
            TPE+ FL      F  LP F PR V   +    +P   ++     +V++ +G  G+GKS
Sbjct: 322 ATPEEFFLKWPVASF-QLPAFDPRTV-SISGPLCLPESSSLLRSNPEVVVAVGFPGAGKS 379

Query: 238 SFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLN 297
           +F++ +L    Y  VNRDTLGSWQ+CV+  + A                           
Sbjct: 380 TFLTEHLVSAGYVYVNRDTLGSWQRCVTTCETA--------------------------- 412

Query: 298 YTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHM 357
                                 L  G  VV+DNTNPD  SR RYI+ A+  GV C     
Sbjct: 413 ----------------------LKQGKRVVIDNTNPDATSRARYIQCARDAGVPCRCFLF 450

Query: 358 NISKEHAKHN 367
             + EHA+HN
Sbjct: 451 TATLEHARHN 460

Source: Otolemur garnettii

Species: Otolemur garnettii

Genus: Otolemur

Family: Galagidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	369
UNIPROTKB|Q96T60	521	PNKP "Bifunctional polynucleot	0.712	0.504	0.420	2.1e-52
UNIPROTKB|F1N3Q9	522	PNKP "Uncharacterized protein"	0.712	0.503	0.424	2.7e-52
UNIPROTKB|E2R0U3	521	PNKP "Uncharacterized protein"	0.699	0.495	0.428	7.2e-52
UNIPROTKB|F1RHU1	522	PNKP "Uncharacterized protein"	0.712	0.503	0.424	9.2e-52
MGI|MGI:1891698	522	Pnkp "polynucleotide kinase 3'	0.699	0.494	0.424	1.2e-51
RGD|1303331	522	Pnkp "polynucleotide kinase 3'	0.699	0.494	0.424	1.3e-50
WB|WBGene00009010	407	F21D5.5 [Caenorhabditis elegan	0.742	0.673	0.367	2.6e-47
POMBASE|SPAC23C11.04c	408	pnk1 "DNA kinase/phosphatase P	0.677	0.612	0.327	3e-30
DICTYBASE|DDB_G0281229	544	pnkp "putative bifunctional po	0.707	0.479	0.334	2.3e-28
GENEDB_PFALCIPARUM|PF13_0334	462	PF13_0334 "polynucleotide kina	0.943	0.753	0.263	6.8e-22

UNIPROTKB|Q96T60 PNKP "Bifunctional polynucleotide phosphatase/kinase" [Homo sapiens (taxid:9606)]

 Score = 543 (196.2 bits), Expect = 2.1e-52, P = 2.1e-52
 Identities = 114/271 (42%), Positives = 157/271 (57%)

Query:     5 WDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLK 64
             W+ ++  KLLVFT+  V    K+A FDLDGTLITT+SGKVFP    DW++L+  I   L+
Sbjct:   147 WENLE--KLLVFTAAGVKPQGKVAGFDLDGTLITTRSGKVFPTGPSDWRILYPEIPRKLR 204

Query:    65 QYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPG 124
             +   +GYKLVIFTNQ +IGR K+   +F+AK E +++ L VP Q+ VAT    YRKPV G
Sbjct:   205 ELEAEGYKLVIFTNQMSIGRGKLPAEEFKAKVEAVVEKLGVPFQVLVATHAGLYRKPVTG 264

Query:   125 MWEYLSQEKNGDLAIDISQSFYXXXXXXXXXXXXP-KKKKDFACTDHXXXXXXXXXXXTP 183
             MW++L ++ N    I I  S +            P +KKKDF+C D            TP
Sbjct:   265 MWDHLQEQANDGTPISIGDSIFVGDAAGRPANWAPGRKKKDFSCADRLFALNLGLPFATP 324

Query:   184 EQIFLNEKAPDFPNLPTFKPREVYQKAQSQTIPN---IPHDKKQVLIMIGSQGSGKSSFV 240
             E+ FL   A  F  LP F PR V  ++    +P    +     +V++ +G  G+GKS+F+
Sbjct:   325 EEFFLKWPAAGF-ELPAFDPRTV-SRSGPLCLPESRALLSASPEVVVAVGFPGAGKSTFL 382

Query:   241 STYLKPLNYTTVNRDTLGSWQKCVSVMKAAL 271
               +L    Y  VNRDTLGSWQ+CV+  + AL
Sbjct:   383 KKHLVSAGYVHVNRDTLGSWQRCVTTCETAL 413

GO:0005524 "ATP binding" evidence=NAS

GO:0019201 "nucleotide kinase activity" evidence=IDA

GO:0046403 "polynucleotide 3'-phosphatase activity" evidence=IDA

GO:0006281 "DNA repair" evidence=IGI

GO:0006261 "DNA-dependent DNA replication" evidence=NAS

GO:0042769 "DNA damage response, detection of DNA damage" evidence=NAS;IDA

GO:0006979 "response to oxidative stress" evidence=IDA

GO:0009314 "response to radiation" evidence=NAS;TAS

GO:0004519 "endonuclease activity" evidence=NAS

GO:0046404 "ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity" evidence=IDA

GO:0003684 "damaged DNA binding" evidence=NAS

GO:0046939 "nucleotide phosphorylation" evidence=IDA

GO:0016311 "dephosphorylation" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0000718 "nucleotide-excision repair, DNA damage removal" evidence=NAS

GO:0003690 "double-stranded DNA binding" evidence=TAS

GO:0017076 "purine nucleotide binding" evidence=NAS

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|F1N3Q9 PNKP "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 115/271 (42%), Positives = 156/271 (57%)

Query:     5 WDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLK 64
             W+  +  KLLVFT+  V    K+A FDLDGTLITT+SGKVFP    DW++L+  I   L+
Sbjct:   148 WETFE--KLLVFTAPGVKARGKVAGFDLDGTLITTRSGKVFPTGPSDWRILYLEIPRKLR 205

Query:    65 QYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPG 124
             +    GYKLVIFTNQ  IGR K+   +F+AK E +++ L VP Q+ VAT    YRKPV G
Sbjct:   206 ELAAKGYKLVIFTNQMGIGRGKLRAEEFKAKVEAVVEKLGVPFQVLVATHAGLYRKPVSG 265

Query:   125 MWEYLSQEKNGDLAIDISQSFYXXXXXXXXXXXXP-KKKKDFACTDHXXXXXXXXXXXTP 183
             MW++L ++ N  + I I  S +            P +KKKDF+C D            TP
Sbjct:   266 MWDHLQEQANEGVPISIGDSVFVGDAAGRPANWAPGRKKKDFSCADRLFALNVGLPFTTP 325

Query:   184 EQIFLNEKAPDFPNLPTFKPREVYQKAQSQTIP---NIPHDKKQVLIMIGSQGSGKSSFV 240
             E+ FL   A  F  LP F PR V  +     +P   ++     +V++ +G  G+GKS+F+
Sbjct:   326 EEFFLKWPATRF-ELPAFDPRSV-ARCGPLCLPESSSLLSSDPEVVVAVGFPGAGKSTFL 383

Query:   241 STYLKPLNYTTVNRDTLGSWQKCVSVMKAAL 271
               +L    Y  VNRDTLGSWQ+CV+  +AAL
Sbjct:   384 REHLVSAGYVHVNRDTLGSWQRCVTACEAAL 414

GO:0046404 "ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity" evidence=IEA

GO:0046403 "polynucleotide 3'-phosphatase activity" evidence=IEA

GO:0042769 "DNA damage response, detection of DNA damage" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|E2R0U3 PNKP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 538 (194.4 bits), Expect = 7.2e-52, P = 7.2e-52
 Identities = 113/264 (42%), Positives = 156/264 (59%)

Query:    12 KLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGY 71
             KLLVFT+  V   +K+A FDLDGTLITT+SGKVFP    DW++L+  I   L++   +GY
Sbjct:   152 KLLVFTAPGVKPRSKVAGFDLDGTLITTRSGKVFPTGPTDWRILYLEIPRKLRELDAEGY 211

Query:    72 KLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQ 131
             KLVIFTNQ AIGR K+   +F+AK E +++ L +P Q+ VAT    YRKPV GMW++L +
Sbjct:   212 KLVIFTNQMAIGRGKLPAEEFKAKVEAVVEKLGLPFQVLVATHAGLYRKPVIGMWDHLRE 271

Query:   132 EKNGDLAIDISQSFYXXXXXXXXXXXXP-KKKKDFACTDHXXXXXXXXXXXTPEQIFLNE 190
             + N  + + I  S +            P +KKKDF+C D            TPE+ FL  
Sbjct:   272 QGNEGVPVSIGDSMFVGDAAGRPANWAPGRKKKDFSCADRLFALNLGLPFATPEEFFLKW 331

Query:   191 KAPDFPNLPTFKPREVYQKAQ---SQTIPNIPHDKKQVLIMIGSQGSGKSSFVSTYLKPL 247
                +F  LPTF PR V         ++   + HD  +V++ +G  G+GKS+F+  +L   
Sbjct:   332 PVANFV-LPTFDPRTVSPSGPLCLPESSSLLSHDP-EVVVAVGFPGAGKSTFLQEHLVSA 389

Query:   248 NYTTVNRDTLGSWQKCVSVMKAAL 271
              Y  VNRDTLGSWQ+CV+  + AL
Sbjct:   390 GYVHVNRDTLGSWQRCVTTCENAL 413

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0046404 "ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity" evidence=IEA

GO:0046403 "polynucleotide 3'-phosphatase activity" evidence=IEA

GO:0042769 "DNA damage response, detection of DNA damage" evidence=IEA

UNIPROTKB|F1RHU1 PNKP "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
 Identities = 115/271 (42%), Positives = 158/271 (58%)

Query:     5 WDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLK 64
             W+  +  KLLVFT+  V    K+ASFDLDGTLITT+SGKVFP    DW++L+  I   L+
Sbjct:   148 WESFE--KLLVFTAPGVKPRGKVASFDLDGTLITTRSGKVFPTGPSDWRILYLEIPRKLR 205

Query:    65 QYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPG 124
             +   +GYKLVIFTNQ  IGR K+   +F+AK E +++ L VP Q+ VAT    YRKPV G
Sbjct:   206 ELDAEGYKLVIFTNQMGIGRGKLPAEEFKAKVEAVVEKLGVPFQVLVATHAGLYRKPVIG 265

Query:   125 MWEYLSQEKNGDLAIDISQSFYXXXXXXXXXXXXP-KKKKDFACTDHXXXXXXXXXXXTP 183
             MW++L ++ N  + I I  S +            P +KKKDF+C D            TP
Sbjct:   266 MWDHLREQGNEGVPISIGDSVFVGDAAGRPANWAPGRKKKDFSCADRLFALNLGLPFATP 325

Query:   184 EQIFLNEKAPDFPNLPTFKPREVYQKAQSQTIP---NIPHDKKQVLIMIGSQGSGKSSFV 240
             E+ FL      F  LP F PR V  ++    +P   ++     +V++ +G  G+GKS+F+
Sbjct:   326 EEFFLKWPVARF-ELPAFDPRTV-SRSGPLCLPESSSLLSPDPEVVVAVGFPGAGKSTFL 383

Query:   241 STYLKPLNYTTVNRDTLGSWQKCVSVMKAAL 271
               +L    Y  VNRDTLGSWQ+CV+  +AAL
Sbjct:   384 REHLVSAGYVHVNRDTLGSWQRCVTTCEAAL 414

GO:0046404 "ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity" evidence=IEA

GO:0046403 "polynucleotide 3'-phosphatase activity" evidence=IEA

GO:0042769 "DNA damage response, detection of DNA damage" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0006281 "DNA repair" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

MGI|MGI:1891698 Pnkp "polynucleotide kinase 3'- phosphatase" [Mus musculus (taxid:10090)]

 Score = 536 (193.7 bits), Expect = 1.2e-51, P = 1.2e-51
 Identities = 112/264 (42%), Positives = 153/264 (57%)

Query:    12 KLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGY 71
             KLLVFT++ V    K+A+FDLDGTLITT+SGKVFP    DW++L+  I   L++   +GY
Sbjct:   151 KLLVFTASGVKPQGKVAAFDLDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGY 210

Query:    72 KLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQ 131
             KLVIFTNQ  IGR K+    F+ K E +++ L VP Q+ VAT     RKPV GMW++L +
Sbjct:   211 KLVIFTNQMGIGRGKLPAEVFKGKVEAVLEKLGVPFQVLVATHAGLNRKPVSGMWDHLQE 270

Query:   132 EKNGDLAIDISQSFYXXXXXXXXXXXXP-KKKKDFACTDHXXXXXXXXXXXTPEQIFLNE 190
             + N  + I +  S +            P +KKKDF+C D            TPE+ FL  
Sbjct:   271 QANEGIPISVEDSVFVGDAAGRLANWAPGRKKKDFSCADRLFALNVGLPFATPEEFFLKW 330

Query:   191 KAPDFPNLPTFKPREVYQKAQSQTIP---NIPHDKKQVLIMIGSQGSGKSSFVSTYLKPL 247
              A  F  LP F PR +   A    +P   ++     +V++ +G  G+GKS+F+  +L   
Sbjct:   331 PAARF-ELPAFDPRTI-SSAGPLYLPESSSLLSPNPEVVVAVGFPGAGKSTFIQEHLVSA 388

Query:   248 NYTTVNRDTLGSWQKCVSVMKAAL 271
              Y  VNRDTLGSWQ+CVS  +AAL
Sbjct:   389 GYVHVNRDTLGSWQRCVSSCQAAL 412

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0006281 "DNA repair" evidence=ISO

GO:0006974 "response to DNA damage stimulus" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016311 "dephosphorylation" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0019201 "nucleotide kinase activity" evidence=ISO

GO:0042769 "DNA damage response, detection of DNA damage" evidence=ISO

GO:0046403 "polynucleotide 3'-phosphatase activity" evidence=ISO

GO:0046404 "ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity" evidence=ISO

GO:0046939 "nucleotide phosphorylation" evidence=ISO

RGD|1303331 Pnkp "polynucleotide kinase 3'-phosphatase" [Rattus norvegicus (taxid:10116)]

 Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
 Identities = 112/264 (42%), Positives = 152/264 (57%)

Query:    12 KLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGY 71
             +LLVFT++ V    K+A+FDLDGTLITT+SGKVFP    DW++L+  I   L++   +GY
Sbjct:   151 QLLVFTASGVKPRGKVAAFDLDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGY 210

Query:    72 KLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQ 131
             KLVI TNQ  IGR K+    F+AK E +++ L VP Q+ VAT     RKPV GMW++L +
Sbjct:   211 KLVILTNQMGIGRGKLPAEVFKAKVEAVLEKLGVPFQVLVATHAGLNRKPVSGMWDHLQE 270

Query:   132 EKNGDLAIDISQSFYXXXXXXXXXXXXP-KKKKDFACTDHXXXXXXXXXXXTPEQIFLNE 190
             + N  + I I  S +            P KKKKDF+C D            TPE+ FL  
Sbjct:   271 KGNEGIPISIGDSVFVGDAAGRPANWAPGKKKKDFSCADRLFALNVGLPFATPEEFFLKW 330

Query:   191 KAPDFPNLPTFKPREVYQKAQSQTIPN---IPHDKKQVLIMIGSQGSGKSSFVSTYLKPL 247
              A  F  LP F PR +   A    +P    +     +V++ +G  G+GKS+F+  +L   
Sbjct:   331 PAARF-ELPAFDPRTI-SSAGPLYLPESSFLLSPNPEVVVAVGFPGAGKSTFIQKHLVSA 388

Query:   248 NYTTVNRDTLGSWQKCVSVMKAAL 271
              Y  VNRDTLGSWQ+CV+  +AAL
Sbjct:   389 GYVHVNRDTLGSWQRCVNSCQAAL 412

GO:0005634 "nucleus" evidence=ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0006281 "DNA repair" evidence=IEA;ISO

GO:0006979 "response to oxidative stress" evidence=IEA;ISO

GO:0016311 "dephosphorylation" evidence=ISO

GO:0019201 "nucleotide kinase activity" evidence=IEA;ISO

GO:0042769 "DNA damage response, detection of DNA damage" evidence=IEA;ISO

GO:0046403 "polynucleotide 3'-phosphatase activity" evidence=IEA;ISO

GO:0046404 "ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity" evidence=IEA;ISO

GO:0046939 "nucleotide phosphorylation" evidence=ISO

WB|WBGene00009010 F21D5.5 [Caenorhabditis elegans (taxid:6239)]

 Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
 Identities = 103/280 (36%), Positives = 156/280 (55%)

Query:     3 GSWDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESV 62
             GSW+  DNG L++FT ++     KIA+FD+DGTLI TKSGKVFP +  DW+LL+ +I S 
Sbjct:    29 GSWESKDNGDLMIFTHSECEGKEKIAAFDMDGTLIKTKSGKVFPTNCQDWQLLYDSIPSD 88

Query:    63 LKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPV 122
              K+   DG+K+VIFTNQ  I   K+   +F+ K E I+  L +PVQ FV+     YRKP 
Sbjct:    89 FKKLHSDGFKIVIFTNQKGIHAGKVDRNEFRKKIEAIVGKLGIPVQAFVSVAGGHYRKPC 148

Query:   123 PGMWEYLSQEKNGDLAIDISQSFYXXXXXXXXXXXXPKKKKDFACTDHXXXXXXXXXXXT 182
              GMW  L   +N ++ I+  +S +             + KKD +  D            T
Sbjct:   149 VGMWNELKL-RNDEVEINEKESIFVGDAAGRIKTTS-RPKKDHSYADRFFAANVGVKFQT 206

Query:   183 PEQIFLNEKAPDFPNLPTFKPREVYQKAQSQTIPN---IPHDKKQVLIMIGSQGSGKSSF 239
             PE+ F   K  +    P F P+ ++ +  ++  P+   +   +K++++M+G  GSGKS+F
Sbjct:   207 PEEFFGKSKVDEPWGPPNFDPKNLFSEEITELEPHDAQLKSSEKEIILMVGFPGSGKSTF 266

Query:   240 VSTYLKPLNYTTVNRDTLGSWQKCVSVMKAAL-DSVLIMI 278
                     +Y  VNRDT+G+WQKCV+  ++ L D   ++I
Sbjct:   267 AKMLGHQHDYKIVNRDTIGTWQKCVAATRSYLADGKSVVI 306

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0019915 "lipid storage" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0003690 "double-stranded DNA binding" evidence=IDA

POMBASE|SPAC23C11.04c pnk1 "DNA kinase/phosphatase Pnk1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
 Identities = 90/275 (32%), Positives = 133/275 (48%)

Query:     5 WDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLK 64
             W I D+  L +     +  + K  +FDLDGTLI TKSG+VF  D  DW     ++   LK
Sbjct:    50 WSITDS--LYIAKYGKLKKTKKFIAFDLDGTLIKTKSGRVFSKDAADWTWWHPSVVPKLK 107

Query:    65 QYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPG 124
                 D Y LVIF+NQ  I RK  +   FQ K   I +SL++P+ ++ A   D++RKP+ G
Sbjct:   108 ALYQDNYSLVIFSNQNGIPRKPSAGHTFQMKIRAIFESLDLPIVLYAAILKDKFRKPLTG 167

Query:   125 MWEYLSQEKNGDLAIDISQSFYXXXXXXXXXXXXPKKKKDFACTDHXXXXXXXXXXXTPE 184
             MW    ++ N   +ID+S   Y              +  D   TD            TPE
Sbjct:   168 MWNSFLKDVNR--SIDLSFIKYVGDAAG--------RPGDHNSTDLKFAENIGIKFETPE 217

Query:   185 QIFLNEK-APDFPNLPTFKPREVYQKAQSQTIPNIPHDKK----QVLIMIGSQGSGKSSF 239
             Q FL     P  PN  +F P+  Y    S + P   H KK    ++++++G   SGKS+ 
Sbjct:   218 QFFLGHSFVP--PNFESFHPKN-YLVRNSSSHPY--HFKKSEHQEIVVLVGFPSSGKSTL 272

Query:   240 VSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSV 274
               + +    Y  VN+D L +  KC+   KAA++++
Sbjct:   273 AESQIVTQGYERVNQDILKTKSKCI---KAAIEAL 304

GO:0000718 "nucleotide-excision repair, DNA damage removal" evidence=IDA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0046403 "polynucleotide 3'-phosphatase activity" evidence=IDA

GO:0046404 "ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity" evidence=IDA

DICTYBASE|DDB_G0281229 pnkp "putative bifunctional polynucleotide phosphatase/kinase" [Dictyostelium discoideum (taxid:44689)]

 Score = 321 (118.1 bits), Expect = 2.3e-28, P = 2.3e-28
 Identities = 94/281 (33%), Positives = 134/281 (47%)

Query:     3 GSWDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESV 62
             G W I D    + +   +V + +KIASFD+D T+I  KSGKV  ++  DW      +   
Sbjct:   160 GKW-IRDES--VSYYLGEVLSRSKIASFDMDSTMIKNKSGKVHAINKDDWLWWDECVPKN 216

Query:    63 LKQYLDDGYKLVIFTNQGAIGR--KKMSTR--DFQAKAEKIIKSLNVPVQMFVATQYDRY 118
             LKQ  +DGY++VIFTNQG IG   K   T+  D   K E + K L  P+  F+A   D  
Sbjct:   217 LKQLYNDGYQVVIFTNQGGIGHGSKFCRTKFNDITKKIEILEKELGFPLIAFIACADDAN 276

Query:   119 RKPVPGMWEYLSQEKNGDLAIDISQSFYXXXXXXXXXXXXPKKKKDFACTDHXXXXXXXX 178
             RKP   MW+ + +  +G + I+ S+SFY               KKDF+ +D         
Sbjct:   277 RKPNRKMWDMMYECTDGKVVINESESFYCGDAAGRPDGWKAGVKKDFSNSDLGFAMTVGI 336

Query:   179 XXXTPEQIFLNEK------APDFPN--LPTFKPREVYQKAQSQTIPNIPHDKKQVLIMIG 230
                TPE  FL E         D  N  +P+  P    +  +S +I  +  D + V I +G
Sbjct:   337 RFETPETHFLGESHFVLAGGDDIVNSLIPS-APTSG-KSFESDSI--VTKDFEMV-ISVG 391

Query:   231 SQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAAL 271
                +GKS+F   Y  P  Y  +N+DTL    +C+    AAL
Sbjct:   392 YPAAGKSTFARKYFGPAGYAIINQDTLKDKAQCLKAANAAL 432

GO:0006303 "double-strand break repair via nonhomologous end joining" evidence=ISS

GO:0005958 "DNA-dependent protein kinase-DNA ligase 4 complex" evidence=ISS

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0046939 "nucleotide phosphorylation" evidence=ISS

GO:0046403 "polynucleotide 3'-phosphatase activity" evidence=ISS

GO:0042769 "DNA damage response, detection of DNA damage" evidence=ISS

GO:0019201 "nucleotide kinase activity" evidence=ISS

GO:0009314 "response to radiation" evidence=ISS

GO:0006979 "response to oxidative stress" evidence=ISS

GO:0006281 "DNA repair" evidence=ISS

GO:0006261 "DNA-dependent DNA replication" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005524 "ATP binding" evidence=ISS

GO:0004519 "endonuclease activity" evidence=ISS

GO:0003677 "DNA binding" evidence=IEA

GENEDB_PFALCIPARUM|PF13_0334 PF13_0334 "polynucleotide kinase, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 260 (96.6 bits), Expect = 6.8e-22, P = 6.8e-22
 Identities = 104/395 (26%), Positives = 175/395 (44%)

Query:     4 SWDIVDNGKL--LVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIES 61
             +W+I ++  L  +V    D     KI SFDLD TLI ++ G   P       + +S+I  
Sbjct:    15 NWNIFEDSLLYRIVKDKEDKIYK-KIFSFDLDNTLILSR-GFFKPAQNEKDYIFYSDIIE 72

Query:    62 VLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKP 121
              LK+  ++ YK++IF+NQ  +   K+S  +   + + II+ + +P++ ++A + D+YRKP
Sbjct:    73 FLKKKHEENYKIMIFSNQKGVSSGKLSLSNLINRVDDIIEKIGLPLECYLALKNDKYRKP 132

Query:   122 VPGMWEYLSQ--EKN-------GDLAIDI-----SQSF-------YXXXXXXXXXXXXPK 160
               GM+ + +Q  ++N       GD A  I      Q F       Y             K
Sbjct:   133 RIGMYLFATQNYKQNLDEVIYVGDNANRIYDEKFKQEFINHLKYIYSKNNVNININDIYK 192

Query:   161 K-KKDFACTDHXXXXXXXXXXXTPEQIFLNEK---APDFPNLPTFKPREVYQKAQSQTIP 216
             + KKD+  TD            TPE +FLN K   + DF   P +  +E+ ++       
Sbjct:   193 RLKKDYTDTDLKFALNINAKFYTPEDLFLNIKNHISTDFLFNPKYFNKELNEQENINKKN 252

Query:   217 NIPHDKKQVLIMIGSQG---SGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDS 273
             N  H  +  +    SQ    + K +  +  + P N  T N       +K +         
Sbjct:   253 N--HFYEICMKDYHSQNENINNKKNNTNNNIIPNNQYTTN-------EKYIPPNDQ--QK 301

Query:   274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNP 333
             ++I+IG  G GK+   + Y     Y  +N +   +  KC+ V+K  L    +V++DN N 
Sbjct:   302 LIILIGPPGCGKTFLCTNYFS--TYIRINMEEYKTISKCIQVLKEKLLQRKNVIIDNVNS 359

Query:   334 DKESRHRYIEAAKQ--HGVRCIAVHMNISKEHAKH 366
               ++R  YI  AK+    +    ++ N SKE   H
Sbjct:   360 LIKNRLLYINEAKKINQNIEIRLIYFNYSKELIIH 394

GO:0003684 "damaged DNA binding" evidence=ISS

GO:0006974 "response to DNA damage stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O13911	PNK1_SCHPO	2, ., 7, ., 1, ., 7, 8	0.3178	0.8130	0.7352	yes	N/A
Q19683	YZR5_CAEEL	No assigned EC number	0.3756	0.8563	0.7764	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.3	0.691
3rd Layer	3.1.3.32	LOW CONFIDENCE prediction!
3rd Layer	2.7.1	LOW CONFIDENCE prediction!
4th Layer	2.7.1.78	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	369
TIGR01663	526	TIGR01663, PNK-3'Pase, polynucleotide 5'-kinase 3'	1e-104
pfam08645	158	pfam08645, PNK3P, Polynucleotide kinase 3 phosphat	5e-70
TIGR01664	166	TIGR01664, DNA-3'-Pase, DNA 3'-phosphatase	3e-61
TIGR01662	132	TIGR01662, HAD-SF-IIIA, HAD-superfamily hydrolase,	2e-28
pfam13671	143	pfam13671, AAA_33, AAA domain	3e-23
COG0241	181	COG0241, HisB, Histidinol phosphatase and related	3e-17
TIGR01656	147	TIGR01656, Histidinol-ppas, histidinol-phosphate p	2e-08
PHA02530	300	PHA02530, pseT, polynucleotide kinase; Provisional	3e-07
TIGR04075	851	TIGR04075, bacter_Pnkp, polynucleotide kinase-phos	1e-06
TIGR01261	161	TIGR01261, hisB_Nterm, histidinol-phosphatase	5e-06
cd01427	139	cd01427, HAD_like, Haloacid dehalogenase-like hydr	2e-05
COG4639	168	COG4639, COG4639, Predicted kinase [General functi	3e-05
PRK08942	181	PRK08942, PRK08942, D,D-heptose 1,7-bisphosphate p	3e-05
TIGR00213	176	TIGR00213, GmhB_yaeD, D,D-heptose 1,7-bisphosphate	1e-04
PRK05446	354	PRK05446, PRK05446, imidazole glycerol-phosphate d	0.001
TIGR01681	128	TIGR01681, HAD-SF-IIIC, HAD-superfamily phosphatas	0.001

>gnl|CDD|130724 TIGR01663, PNK-3'Pase, polynucleotide 5'-kinase 3'-phosphatase

 Score =  316 bits (810), Expect = e-104
 Identities = 149/374 (39%), Positives = 191/374 (51%), Gaps = 58/374 (15%)

Query: 2   KGSWDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIES 61
           KG+    +  KLL+FT+  V    KIA FDLDGT+I TKSGKVFP    DW+++F  I  
Sbjct: 145 KGNPGWENLEKLLIFTAAGVKGQEKIAGFDLDGTIIKTKSGKVFPKGPDDWQIIFPEIPE 204

Query: 62  VLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKP 121
            LK+   DG+K+ IFTNQG I R K++  DF+AK E I+  L VP Q+F+A     YRKP
Sbjct: 205 KLKELEADGFKICIFTNQGGIARGKINADDFKAKIEAIVAKLGVPFQVFIAIGAGFYRKP 264

Query: 122 VPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAAN-WAP-KKKKDFACTDHLFAFNLNLA 179
           + GMW++L +E N    I     F+ GDAAGR AN  A  KKKKDF+C D LFA NL + 
Sbjct: 265 LTGMWDHLKEEANDGTEIQEDDCFFVGDAAGRPANGKAAGKKKKDFSCADRLFAANLGIP 324

Query: 180 FFTPEQIFLNEKAPDFPNLPTFKPREVYQKAQSQTIPNIPHDKKQVLIMIGSQGSGKSSF 239
           F TPE+ FL + A  F   P F PR V    Q Q     P D                  
Sbjct: 325 FATPEEFFLGKPAAGF-EKPAFDPRSV----QDQGPLCDPDDL----------------- 362

Query: 240 VSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDS----VLIMIGSQGSGKSSFVSTYLKP 295
                                         ALD     ++I +G  G+GKS F   + +P
Sbjct: 363 ------------------------------ALDDAPCEMVIAVGFPGAGKSHFCKKFFQP 392

Query: 296 LNYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAV 355
             Y  VN DTLGS Q C++  + ALD G    +DNTNPD  SR ++++ A+  G+ C   
Sbjct: 393 AGYKHVNADTLGSTQNCLTACERALDQGKRCAIDNTNPDAASRAKFLQCARAAGIPCRCF 452

Query: 356 HMNISKEHAKHNIK 369
             N     AKHNI 
Sbjct: 453 LFNAPLAQAKHNIA 466

This model represents the metazoan 5'-polynucleotide-kinase-3'-phosphatase, PNKP, which is believed to be involved in repair of oxidative DNA damage. Removal of 3' phosphates is essential for the further processing of the break by DNA polymerases. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is replaced by a conserved arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Very close relatives of this domain are also found separate from the N- and C-terminal domains seen here, as in the 3'-phosphatase found in plants. The larger family of these domains is described by TIGR01664. Outside of the phosphatase domain is a P-loop ATP-binding motif associated with the kinase activity. The entry for the mouse homolog, GP|7108591, appears to be missing a large piece of sequence corresponding to the first conserved catalytic motif of the phosphatase domain as well as the conserved threonine of the second motif. Either this is a sequencing artifact or this may represent a pseudo- or non-functional gene. Note that the EC number for the kinase function is: 2.7.1.78. Length = 526

>gnl|CDD|219952 pfam08645, PNK3P, Polynucleotide kinase 3 phosphatase

 Score =  215 bits (551), Expect = 5e-70
 Identities = 87/163 (53%), Positives = 114/163 (69%), Gaps = 6/163 (3%)

Query: 26  KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRK 85
           KIA+FDLDGTLI TKSGKVFP D  DWK L+ ++   LK+  +DGYK+VIFTNQG I  K
Sbjct: 1   KIAAFDLDGTLIKTKSGKVFPKDADDWKWLYPSVPEKLKKLHEDGYKIVIFTNQGGISTK 60

Query: 86  -KMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQS 144
            K S   F+ K E I+K L+VP+Q++ AT+ D+YRKP  GMW+ L ++ N  + ID+ +S
Sbjct: 61  GKKSAESFKNKIESILKKLDVPLQVYAATKKDKYRKPNTGMWDELLEDYNDGITIDLEKS 120

Query: 145 FYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPEQIF 187
           FY GDAAGR     P +KKDF+ +D  FA N+ + F TPE+ F
Sbjct: 121 FYVGDAAGR-----PARKKDFSDSDRKFALNVGIKFKTPEEFF 158

Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin. Length = 158

>gnl|CDD|211680 TIGR01664, DNA-3'-Pase, DNA 3'-phosphatase

 Score =  194 bits (494), Expect = 3e-61
 Identities = 86/176 (48%), Positives = 112/176 (63%), Gaps = 10/176 (5%)

Query: 13  LLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYK 72
           L VFT++     +K+A+FDLDGTLITT+SGKVFP    DW+ L+  I + L++  D+GYK
Sbjct: 1   LFVFTADGPKPQSKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYK 60

Query: 73  LVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQE 132
           +VIFTNQ  IGR K+S   F+ K E  ++ L VP+Q+  AT    YRKP+ GMWEYL  +
Sbjct: 61  IVIFTNQSGIGRGKLSAESFKNKIEAFLEKLKVPIQVLAATHAGLYRKPMTGMWEYLQSQ 120

Query: 133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPEQIFL 188
            N    I +++SFY GDAAGR        K DF+  D  FA NL L F  PE+ FL
Sbjct: 121 YNSP--IKMTRSFYVGDAAGR--------KLDFSDADIKFAKNLGLEFKYPEEFFL 166

This model represents a family of proteins and protein domains which catalyze the dephosphorylation of DNA 3'-phosphates. It is believed that this activity is important for the repair of single-strand breaks in DNA caused by radiation or oxidative damage. This domain is often (TIGR01663), but not always linked to a DNA 5'-kinase domain. The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region. Length = 166

>gnl|CDD|233517 TIGR01662, HAD-SF-IIIA, HAD-superfamily hydrolase, subfamily IIIA

 Score =  107 bits (269), Expect = 2e-28
 Identities = 43/145 (29%), Positives = 60/145 (41%), Gaps = 14/145 (9%)

Query: 26  KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRK 85
           K    DLDGTL       V  VD  D ++L+  +   L +  + GYK+VI TNQ  IGR 
Sbjct: 1   KGVVLDLDGTLTD----DVPYVDDEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRG 56

Query: 86  KMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSF 145
           K        +  + ++ L VP+ +  A      RKP PGM+    +  N    ID  +S 
Sbjct: 57  KF----SSGRVARRLEELGVPIDILYACP--HCRKPKPGMFLEALKRFNE---IDPEESV 107

Query: 146 YAGDAAGRAANWAPK-KKKDFACTD 169
           Y GD        A +          
Sbjct: 108 YVGDQDLTDLQAAKRAGLAFILVAP 132

This subfamily falls within the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The Class III subfamilies are characterized by the lack of any domains located between either between the first and second conserved catalytic motifs (as in the Class I subfamilies, TIGR01493, TIGR01509, TIGR01488 and TIGR01494) or between the second and third conserved catalytic motifs (as in the Class II subfamilies, TIGR01460 and TIGR01484) of the superfamily domain. The IIIA subfamily contains five major clades: histidinol-phosphatase (TIGR01261) and histidinol-phosphatase-related protein (TIGR00213) which together form a subfamily (TIGR01656), DNA 3'-phosphatase (TIGR01663, TIGR01664), YqeG (TIGR01668) and YrbI (TIGR01670). In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme [Unknown function, Enzymes of unknown specificity]. Length = 132

>gnl|CDD|222307 pfam13671, AAA_33, AAA domain

 Score = 93.9 bits (234), Expect = 3e-23
 Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 20/116 (17%)

Query: 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS--------------------WQKCV 313
           +++M+G  GSGKS+F    L+ L    ++ DTL                      +Q+ +
Sbjct: 1   LILMVGLPGSGKSTFARRLLRELGAVVLSSDTLRKRLRGDGPPDISYYARASGRVYQRLL 60

Query: 314 SVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK 369
            + + AL +G  V+VD TN  +E R R I+ A+++G     V++   +E  +    
Sbjct: 61  ELAREALRAGRPVIVDATNLSREERARLIDLARRYGAPVRIVYLEAPEEVLRERNA 116

This family of domains contain only a P-loop motif, that is characteristic of the AAA superfamily. Many of the proteins in this family are just short fragments so there is no Walker B motif. Length = 143

>gnl|CDD|223319 COG0241, HisB, Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]

 Score = 78.5 bits (194), Expect = 3e-17
 Identities = 43/140 (30%), Positives = 58/140 (41%), Gaps = 20/140 (14%)

Query: 30  FDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMST 89
            D DGT+   K   V  +D  D++ +   I   L +    GYKLV+ TNQ  IGR   + 
Sbjct: 10  LDRDGTINIDKGDYVDSLD--DFQFIPGVIP-ALLKLQRAGYKLVVVTNQSGIGRGYFTE 66

Query: 90  RDFQAKAEKIIKSL---NVPVQMF-----VATQYDRYRKPVPGMWEYLSQEKNGDLAIDI 141
            DF     K++K L    V +                RKP PGM     +E N    ID+
Sbjct: 67  ADFDKLHNKMLKILASQGVKIDGILYCPHHPEDNCDCRKPKPGMLLSALKEYN----IDL 122

Query: 142 SQSFYAGDA-----AGRAAN 156
           S+S+  GD      A   A 
Sbjct: 123 SRSYVVGDRLTDLQAAENAG 142

Length = 181

>gnl|CDD|233512 TIGR01656, Histidinol-ppas, histidinol-phosphate phosphatase family domain

 Score = 52.0 bits (125), Expect = 2e-08
 Identities = 38/147 (25%), Positives = 56/147 (38%), Gaps = 23/147 (15%)

Query: 30  FDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMST 89
            D DG +        +P    DW+L    + ++L      GY +V+ TNQ  IGR   S 
Sbjct: 5   LDRDGVINEDTVSD-YPRSLDDWQLRPGAVPALLT-LRAAGYTVVVVTNQSGIGRGYFSA 62

Query: 90  RDF---QAKAEKIIKSLNVPVQMFVATQYDRY-----RKPVPGMWEYLSQEKNGDLAIDI 141
             F     +  ++++ L V V   +   +        RKP PG+      E    L +D 
Sbjct: 63  EAFRAPNGRVLELLRQLGVAVDGVLFCPHHPADNCSCRKPKPGLIL----EALKRLGVDA 118

Query: 142 SQSFYAGD---------AAGRAANWAP 159
           S+S   GD          AG AA    
Sbjct: 119 SRSLVVGDRLRDLQAARNAGLAAVLLV 145

This domain is found in authentic histidinol-phosphate phosphatases which are sometimes found as stand-alone entities and sometimes as fusions with imidazoleglycerol-phosphate dehydratase (TIGR01261). Additionally, a family of proteins including YaeD from E. coli (TIGR00213) and various other proteins are closely related but may not have the same substrate specificity. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3. Length = 147

>gnl|CDD|222856 PHA02530, pseT, polynucleotide kinase; Provisional

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 22/100 (22%)

Query: 273 SVLIMIGSQGSGKSSFVSTYLKPL-NYTTVNRDTL-------GSW---------QKCVSV 315
            +++ +G  GSGKS++   +         VNRD L       G W         +  V+ 
Sbjct: 3   KIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTK 62

Query: 316 M-----KAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGV 350
                  AAL SG SV++ +TN + E R ++ E AK+ G 
Sbjct: 63  AQEAAALAALKSGKSVIISDTNLNPERRRKWKELAKELGA 102

Length = 300

>gnl|CDD|234457 TIGR04075, bacter_Pnkp, polynucleotide kinase-phosphatase

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 26/105 (24%), Positives = 46/105 (43%), Gaps = 23/105 (21%)

Query: 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSW-------QKCVSVMKAALD---- 321
           S+++++G+ GSGKS+F   + KP     ++ D            Q   S    A D    
Sbjct: 9   SLVVLVGASGSGKSTFARKHFKP--TEVLSSDFCRGLVSDDENDQ---SASSDAFDVLYY 63

Query: 322 -------SGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNI 359
                   GL  V+D TN   E R   +  A+++ V  +A+ +++
Sbjct: 64  IAGKRLARGLLTVIDATNVQPEDRKGLVALAREYHVLPVAIVLDL 108

Members of this protein family are the bacterial polynucleotide kinase-phosphatase (Pnkp) whose genes occur paired with genes for the 3' terminal RNA ribose 2'-O-methyltransferase Hen1. All members of the seed alignment belong to a cassette with the Hen1. The pair acts in bacterial RNA repair. This enzyme performs end-healing reactions on broken RNA, preparing from the RNA ligase to close the break. The working hypothesis is that the combination of Pnkp (RNA repair) and Hen1 (RNA modification) serves to first repair RNA damage from ribotoxins and then perform a modification that prevents the damage from recurring [Transcription, RNA processing]. Length = 851

>gnl|CDD|130328 TIGR01261, hisB_Nterm, histidinol-phosphatase

 Score = 45.9 bits (109), Expect = 5e-06
 Identities = 42/163 (25%), Positives = 58/163 (35%), Gaps = 33/163 (20%)

Query: 26  KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSN-IESVLKQYLDDGYKLVIFTNQGAIGR 84
           KI   D DGTLI       F VD  + KL F   +   L +    GYK V+ TNQ  +G 
Sbjct: 2   KILFIDRDGTLIEEPPSD-FQVDALE-KLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGT 59

Query: 85  KKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRY--------RKPVPGMWE-YLSQEKNG 135
                 DF      +++       +F       +        RKP   + E YL +    
Sbjct: 60  PSFPQADFDGPHNLMLQIFRSQGIIFDDVLICPHFPDDNCDCRKPKIKLLEPYLKKNL-- 117

Query: 136 DLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNL 178
              ID ++S+  GD                  TD   A NL +
Sbjct: 118 ---IDKARSYVIGDRE----------------TDMQLAENLGI 141

This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis [Amino acid biosynthesis, Histidine family]. Length = 161

>gnl|CDD|119389 cd01427, HAD_like, Haloacid dehalogenase-like hydrolases

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 27/138 (19%), Positives = 48/138 (34%), Gaps = 19/138 (13%)

Query: 30  FDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIG-RKKMS 88
           FDLDGTL+ ++ G     +      L+  ++  LK+  + G KL + TN+      + + 
Sbjct: 4   FDLDGTLLDSEPGIAEIEELE----LYPGVKEALKELKEKGIKLALATNKSRREVLELLE 59

Query: 89  TRDFQAKAEKII-----KSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQ 143
                   + +I             +F+        KP P       +     L +D  +
Sbjct: 60  ELGLDDYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKLLAALKL----LGVDPEE 115

Query: 144 SFYAGD-----AAGRAAN 156
               GD        +AA 
Sbjct: 116 VLMVGDSLNDIEMAKAAG 133

The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases. Length = 139

>gnl|CDD|226986 COG4639, COG4639, Predicted kinase [General function prediction only]

 Score = 44.0 bits (104), Expect = 3e-05
 Identities = 22/99 (22%), Positives = 40/99 (40%), Gaps = 16/99 (16%)

Query: 273 SVLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRDTLGS-----------WQKCVSVM 316
            ++++ G+ GSGKS+F            L+   +      S           W      +
Sbjct: 3   ILVVLRGASGSGKSTFAKENFLQNYVLSLDDLRLLLGVSASKENSQKNDELVWDILYKQL 62

Query: 317 KAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAV 355
           +  L  G   ++D TN  +E R + I+ AK +G +  A+
Sbjct: 63  EQRLRRGKFTIIDATNLRREDRRKLIDLAKAYGYKIYAI 101

Length = 168

>gnl|CDD|236354 PRK08942, PRK08942, D,D-heptose 1,7-bisphosphate phosphatase; Validated

 Score = 44.0 bits (105), Expect = 3e-05
 Identities = 44/152 (28%), Positives = 62/152 (40%), Gaps = 40/152 (26%)

Query: 31  DLDGTLITTKSGKVFPVDTHDWKLLFSNIESV--LKQYLDDGYKLVIFTNQGAIGRKKMS 88
           D DG +     G V   D  +W  +  +IE++  LKQ    GY++V+ TNQ  I R   +
Sbjct: 9   DRDGVINVDSDGYVKSPD--EWIPIPGSIEAIARLKQA---GYRVVVATNQSGIARGLFT 63

Query: 89  TRDFQAKAEKIIKSLNVPVQMFVATQYDR-----Y-----------RKPVPGMWEYLSQE 132
                A  EK+  SL        A +  R     Y           RKP PGM   +++ 
Sbjct: 64  EAQLNALHEKMDWSL--------ADRGGRLDGIYYCPHHPEDGCDCRKPKPGMLLSIAER 115

Query: 133 KNGDLAIDISQSFYAGDA-----AGRAANWAP 159
               L ID++ S   GD+     A  AA   P
Sbjct: 116 ----LNIDLAGSPMVGDSLRDLQAAAAAGVTP 143

Length = 181

>gnl|CDD|129317 TIGR00213, GmhB_yaeD, D,D-heptose 1,7-bisphosphate phosphatase

 Score = 41.8 bits (98), Expect = 1e-04
 Identities = 44/146 (30%), Positives = 63/146 (43%), Gaps = 27/146 (18%)

Query: 30  FDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMST 89
            D DGT I    G V  +D  +++ +   I++ L++    GY LV+ TNQ  I R   + 
Sbjct: 6   LDRDGT-INIDHGYVHEID--NFEFIDGVIDA-LRELKKMGYALVLVTNQSGIARGYFTE 61

Query: 90  RDFQAKAEKIIKSL--------------NVPVQMFVATQYDRYRKPVPGMWEYLSQEKNG 135
             F+   E +  SL              + P  +    Q    RKP PGM   L   K  
Sbjct: 62  AQFEQLTEWMDWSLAERDVDLDGIYYCPHHPEGVEEFRQVCDCRKPKPGM--LLQARK-- 117

Query: 136 DLAIDISQSFYAGDA-----AGRAAN 156
           +L ID++QS+  GD      AG AA 
Sbjct: 118 ELHIDMAQSYMVGDKLEDMQAGVAAK 143

This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PMID:11751812) [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. Length = 176

>gnl|CDD|235471 PRK05446, PRK05446, imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional

 Score = 40.5 bits (96), Expect = 0.001
 Identities = 40/136 (29%), Positives = 55/136 (40%), Gaps = 17/136 (12%)

Query: 24  SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLF-SNIESVLKQYLDDGYKLVIFTNQGAI 82
             KI   D DGTLI       F VD+ D KL F   +   L +    GYKLV+ TNQ  +
Sbjct: 1   MQKILFIDRDGTLIEEPPTD-FQVDSLD-KLAFEPGVIPALLKLQKAGYKLVMVTNQDGL 58

Query: 83  GRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRY--------RKPVPGMWE-YLSQEK 133
           G       DF      +++        F       +        RKP  G+ E YL++  
Sbjct: 59  GTDSFPQEDFDPPHNLMMQIFESQGIKFDEVLICPHFPEDNCSCRKPKTGLVEEYLAEGA 118

Query: 134 NGDLAIDISQSFYAGD 149
                ID++ S+  GD
Sbjct: 119 -----IDLANSYVIGD 129

Length = 354

>gnl|CDD|233526 TIGR01681, HAD-SF-IIIC, HAD-superfamily phosphatase, subfamily IIIC

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 20/121 (16%), Positives = 37/121 (30%), Gaps = 18/121 (14%)

Query: 26  KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVI------FTNQ 79
           K+  FDLD TL T ++  V      D ++    I   L+    +G+ L +          
Sbjct: 1   KVIVFDLDNTLWTGENIVVGEDPIIDLEVTIKEIRDKLQTLKKNGFLLALASYNDDPHVA 60

Query: 80  GAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAI 139
             + +             +    +    + F       Y  P       ++ + NG L  
Sbjct: 61  YELLKIF-----------EDFGIIFPLAEYFDPLT-IGYWLPKSPRLVEIALKLNGVLKP 108

Query: 140 D 140
            
Sbjct: 109 K 109

This model represents the IIIC subfamily of the Haloacid Dehalogenase (HAD) superfamily of aspartate nucleophile hydrolases. Subfamily III (also including IIIA - TIGR01662 and IIIB - pfam03767) contains sequences which do not contain either of the insert domains (between the 1st and 2nd conserved catalytic motifs, subfamily I - TIGR01493, TIGR01509, TIGR01549, TIGR01488, TIGR01494, TIGR01658, TIGR01544 and TIGR01545, or between the 2nd and 3rd, subfamily II - TIGR01460 and TIGR01484). Subfamily IIIC contains five relatively distantly related clades: a family of viral proteins (TIGR01684), a family of eukaryotic proteins called MDP-1 and a family of archaeal proteins most closely related to MDP-1 (TIGR01685), a family of bacteria including the Streptomyces FkbH protein (TIGR01686), and a small clade including the Pasteurella BcbF and EcbF proteins. The overall lack of species overlap among these clades may indicate a conserved function, but the degree of divergence between the clades and the differences in archetecture outside of the domain in some clades warns against such a conclusion. No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC. Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	369
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	100.0
KOG2134|consensus	422		100.0
PF08645	159	PNK3P: Polynucleotide kinase 3 phosphatase; InterP	100.0
TIGR01664	166	DNA-3'-Pase DNA 3'-phosphatase. The central phosph	100.0
COG0241	181	HisB Histidinol phosphatase and related phosphatas	99.97
PRK05446	354	imidazole glycerol-phosphate dehydratase/histidino	99.94
TIGR01261	161	hisB_Nterm histidinol-phosphatase. This model desc	99.94
TIGR00213	176	GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase	99.9
TIGR01656	147	Histidinol-ppas histidinol-phosphate phosphatase f	99.9
PRK08942	181	D,D-heptose 1,7-bisphosphate phosphatase; Validate	99.86
TIGR01662	132	HAD-SF-IIIA HAD-superfamily hydrolase, subfamily I	99.83
PRK06769	173	hypothetical protein; Validated	99.81
PLN03243	260	haloacid dehalogenase-like hydrolase; Provisional	99.72
PLN02770	248	haloacid dehalogenase-like hydrolase family protei	99.71
COG0546	220	Gph Predicted phosphatases [General function predi	99.71
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	99.7
PRK13226	229	phosphoglycolate phosphatase; Provisional	99.7
TIGR02253	221	CTE7 HAD superfamily (subfamily IA) hydrolase, TIG	99.69
PRK13288	214	pyrophosphatase PpaX; Provisional	99.69
COG4639	168	Predicted kinase [General function prediction only	99.69
PRK11587	218	putative phosphatase; Provisional	99.68
TIGR01428	198	HAD_type_II 2-haloalkanoic acid dehalogenase, type	99.68
PLN02575	381	haloacid dehalogenase-like hydrolase	99.68
TIGR02252	203	DREG-2 REG-2-like, HAD superfamily (subfamily IA)	99.67
TIGR01454	205	AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthes	99.66
PRK14988	224	GMP/IMP nucleotidase; Provisional	99.66
PRK13478	267	phosphonoacetaldehyde hydrolase; Provisional	99.65
TIGR01449	213	PGP_bact 2-phosphoglycolate phosphatase, prokaryot	99.65
TIGR01422	253	phosphonatase phosphonoacetaldehyde hydrolase. Thi	99.64
TIGR03351	220	PhnX-like phosphonatase-like hydrolase. This clade	99.64
PRK10826	222	2-deoxyglucose-6-phosphatase; Provisional	99.63
TIGR01509	183	HAD-SF-IA-v3 haloacid dehalogenase superfamily, su	99.63
TIGR02009	185	PGMB-YQAB-SF beta-phosphoglucomutase family hydrol	99.63
PRK10725	188	fructose-1-P/6-phosphogluconate phosphatase; Provi	99.62
PRK09449	224	dUMP phosphatase; Provisional	99.61
PLN02940	382	riboflavin kinase	99.61
PRK06762	166	hypothetical protein; Provisional	99.6
PRK13223	272	phosphoglycolate phosphatase; Provisional	99.6
TIGR01990	185	bPGM beta-phosphoglucomutase. The enzyme from L. l	99.59
TIGR01668	170	YqeG_hyp_ppase HAD superfamily (subfamily IIIA) ph	99.59
TIGR02254	224	YjjG/YfnB HAD superfamily (subfamily IA) hydrolase	99.59
TIGR01993	184	Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These	99.58
PHA02530	300	pseT polynucleotide kinase; Provisional	99.58
PRK13222	226	phosphoglycolate phosphatase; Provisional	99.57
TIGR02247	211	HAD-1A3-hyp Epoxide hydrolase N-terminal domain-li	99.57
PLN02779	286	haloacid dehalogenase-like hydrolase family protei	99.55
COG0645	170	Predicted kinase [General function prediction only	99.54
cd01427	139	HAD_like Haloacid dehalogenase-like hydrolases. Th	99.54
TIGR01685	174	MDP-1 magnesium-dependent phosphatase-1. This mode	99.53
PRK10563	221	6-phosphogluconate phosphatase; Provisional	99.53
PRK10748	238	flavin mononucleotide phosphatase; Provisional	99.53
COG0637	221	Predicted phosphatase/phosphohexomutase [General f	99.52
TIGR01549	154	HAD-SF-IA-v1 haloacid dehalogenase superfamily, su	99.52
COG1011	229	Predicted hydrolase (HAD superfamily) [General fun	99.52
COG2179	175	Predicted hydrolase of the HAD superfamily [Genera	99.51
PRK13225	273	phosphoglycolate phosphatase; Provisional	99.5
KOG3085|consensus	237		99.5
PHA02530	300	pseT polynucleotide kinase; Provisional	99.48
PRK06698	459	bifunctional 5'-methylthioadenosine/S-adenosylhomo	99.48
PF01583	156	APS_kinase: Adenylylsulphate kinase; InterPro: IPR	99.47
cd02021	150	GntK Gluconate kinase (GntK) catalyzes the phospho	99.46
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	99.46
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	99.46
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	99.46
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.46
TIGR01670	154	YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-pho	99.45
COG4088	261	Predicted nucleotide kinase [Nucleotide transport	99.44
smart00577	148	CPDc catalytic domain of ctd-like phosphatases.	99.44
TIGR01672	237	AphA HAD superfamily (subfamily IIIB) phosphatase,	99.43
TIGR01681	128	HAD-SF-IIIC HAD-superfamily phosphatase, subfamily	99.43
TIGR00338	219	serB phosphoserine phosphatase SerB. Phosphoserine	99.42
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	99.4
COG0529	197	CysC Adenylylsulfate kinase and related kinases [I	99.4
PF13419	176	HAD_2: Haloacid dehalogenase-like hydrolase; PDB:	99.4
PRK09456	199	?-D-glucose-1-phosphatase; Provisional	99.39
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	99.39
TIGR01491	201	HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPa	99.38
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	99.38
PHA02597	197	30.2 hypothetical protein; Provisional	99.37
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	99.36
COG0647	269	NagD Predicted sugar phosphatases of the HAD super	99.36
PRK10444	248	UMP phosphatase; Provisional	99.34
PLN02811	220	hydrolase	99.33
TIGR01457	249	HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydr	99.32
TIGR01452	279	PGP_euk phosphoglycolate/pyridoxal phosphate phosp	99.31
TIGR01493	175	HAD-SF-IA-v2 Haloacid dehalogenase superfamily, su	99.3
PLN02645	311	phosphoglycolate phosphatase	99.27
TIGR02726	169	phenyl_P_delta phenylphosphate carboxylase, delta	99.26
PRK14527	191	adenylate kinase; Provisional	99.26
PRK09552	219	mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosp	99.26
PRK14532	188	adenylate kinase; Provisional	99.25
TIGR01359	183	UMP_CMP_kin_fam UMP-CMP kinase family. This subfam	99.23
PLN02954	224	phosphoserine phosphatase	99.23
TIGR01459	242	HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolas	99.23
PRK00889	175	adenylylsulfate kinase; Provisional	99.21
PRK11009	237	aphA acid phosphatase/phosphotransferase; Provisio	99.21
PRK09484	183	3-deoxy-D-manno-octulosonate 8-phosphate phosphata	99.21
PRK14531	183	adenylate kinase; Provisional	99.21
TIGR01691	220	enolase-ppase 2,3-diketo-5-methylthio-1-phosphopen	99.21
PRK03846	198	adenylylsulfate kinase; Provisional	99.2
TIGR01686	320	FkbH FkbH-like domain. The C-terminal portion of t	99.19
TIGR01458	257	HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydr	99.19
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.19
KOG2882|consensus	306		99.19
PRK05537	568	bifunctional sulfate adenylyltransferase subunit 1	99.18
TIGR01548	197	HAD-SF-IA-hyp1 haloacid dehalogenase superfamily,	99.16
PF07931	174	CPT: Chloramphenicol phosphotransferase-like prote	99.16
PF01591	222	6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR0130	99.15
TIGR01460	236	HAD-SF-IIA Haloacid Dehalogenase Superfamily Class	99.14
PRK11133	322	serB phosphoserine phosphatase; Provisional	99.13
PF09419	168	PGP_phosphatase: Mitochondrial PGP phosphatase; In	99.13
TIGR03575	340	selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryoti	99.11
TIGR01489	188	DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopent	99.1
PRK13582	205	thrH phosphoserine phosphatase; Provisional	99.08
PRK05541	176	adenylylsulfate kinase; Provisional	99.08
KOG0635|consensus	207		99.07
cd01428	194	ADK Adenylate kinase (ADK) catalyzes the reversibl	99.06
KOG3354|consensus	191		99.06
PRK07261	171	topology modulation protein; Provisional	99.04
PRK06217	183	hypothetical protein; Validated	99.04
TIGR01490	202	HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrol	99.03
PRK00279	215	adk adenylate kinase; Reviewed	99.02
PLN02200	234	adenylate kinase family protein	99.0
COG0703	172	AroK Shikimate kinase [Amino acid transport and me	98.99
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	98.99
TIGR01351	210	adk adenylate kinases. Adenylate kinase (EC 2.7.4.	98.99
COG3265	161	GntK Gluconate kinase [Carbohydrate transport and	98.95
PRK11545	163	gntK gluconate kinase 1; Provisional	98.94
TIGR01488	177	HAD-SF-IB Haloacid Dehalogenase superfamily, subfa	98.93
PRK13948	182	shikimate kinase; Provisional	98.92
PRK00131	175	aroK shikimate kinase; Reviewed	98.92
PRK08118	167	topology modulation protein; Reviewed	98.91
PRK09825	176	idnK D-gluconate kinase; Provisional	98.9
KOG3040|consensus	262		98.9
TIGR03333	214	salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl	98.9
PRK14530	215	adenylate kinase; Provisional	98.89
PLN02674	244	adenylate kinase	98.88
cd00464	154	SK Shikimate kinase (SK) is the fifth enzyme in th	98.87
PRK01184	184	hypothetical protein; Provisional	98.85
PRK13946	184	shikimate kinase; Provisional	98.85
PRK13947	171	shikimate kinase; Provisional	98.85
PRK12339	197	2-phosphoglycerate kinase; Provisional	98.84
KOG2914|consensus	222		98.83
PRK05057	172	aroK shikimate kinase I; Reviewed	98.83
PRK08238	479	hypothetical protein; Validated	98.83
PRK13949	169	shikimate kinase; Provisional	98.83
PRK14528	186	adenylate kinase; Provisional	98.82
PRK02496	184	adk adenylate kinase; Provisional	98.82
KOG3109|consensus	244		98.81
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	98.8
TIGR01456	321	CECR5 HAD-superfamily class IIA hydrolase, TIGR014	98.8
PF13242	75	Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OY	98.79
PRK13808	333	adenylate kinase; Provisional	98.79
PTZ00445	219	p36-lilke protein; Provisional	98.79
PRK00625	173	shikimate kinase; Provisional	98.79
PTZ00088	229	adenylate kinase 1; Provisional	98.78
KOG3062|consensus	281		98.78
PRK03731	171	aroL shikimate kinase II; Reviewed	98.78
PF00406	151	ADK: Adenylate kinase; InterPro: IPR000850 Adenyla	98.77
PRK06547	172	hypothetical protein; Provisional	98.77
PRK05416	288	glmZ(sRNA)-inactivating NTPase; Provisional	98.77
PRK03839	180	putative kinase; Provisional	98.76
KOG3079|consensus	195		98.73
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.73
TIGR02251	162	HIF-SF_euk Dullard-like phosphatase domain. This d	98.73
TIGR02137	203	HSK-PSP phosphoserine phosphatase/homoserine phosp	98.71
TIGR01684	301	viral_ppase viral phosphatase. These proteins also	98.71
PRK14021	542	bifunctional shikimate kinase/3-dehydroquinate syn	98.7
PRK14529	223	adenylate kinase; Provisional	98.68
PF13344	101	Hydrolase_6: Haloacid dehalogenase-like hydrolase;	98.67
PRK04040	188	adenylate kinase; Provisional	98.66
PF00702	215	Hydrolase: haloacid dehalogenase-like hydrolase; I	98.66
PRK14526	211	adenylate kinase; Provisional	98.6
TIGR01533	266	lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) famil	98.6
PLN02459	261	probable adenylate kinase	98.59
PRK12337	475	2-phosphoglycerate kinase; Provisional	98.59
COG4185	187	Uncharacterized protein conserved in bacteria [Fun	98.59
PLN02199	303	shikimate kinase	98.58
PRK12338	319	hypothetical protein; Provisional	98.57
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	98.54
PF08303	168	tRNA_lig_kinase: tRNA ligase kinase domain; InterP	98.54
PRK08233	182	hypothetical protein; Provisional	98.53
PRK04182	180	cytidylate kinase; Provisional	98.53
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.48
COG1102	179	Cmk Cytidylate kinase [Nucleotide transport and me	98.47
PRK08356	195	hypothetical protein; Provisional	98.41
smart00775	157	LNS2 LNS2 domain. This domain is found in Saccharo	98.4
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.4
PRK08154	309	anaerobic benzoate catabolism transcriptional regu	98.4
PF01202	158	SKI: Shikimate kinase; InterPro: IPR000623 Shikima	98.39
PHA03398	303	viral phosphatase superfamily protein; Provisional	98.39
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	98.38
TIGR02173	171	cyt_kin_arch cytidylate kinase, putative. Proteins	98.37
PRK14737	186	gmk guanylate kinase; Provisional	98.37
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.36
KOG4622|consensus	291		98.35
PRK00081	194	coaE dephospho-CoA kinase; Reviewed	98.35
cd01672	200	TMPK Thymidine monophosphate kinase (TMPK), also k	98.34
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	98.33
PRK13951	488	bifunctional shikimate kinase/3-dehydroquinate syn	98.33
PF12689	169	Acid_PPase: Acid Phosphatase; InterPro: IPR010036	98.3
PRK01158	230	phosphoglycolate phosphatase; Provisional	98.3
COG0560	212	SerB Phosphoserine phosphatase [Amino acid transpo	98.3
COG3896	205	Chloramphenicol 3-O-phosphotransferase [Defense me	98.29
TIGR01689	126	EcbF-BcbF capsule biosynthesis phosphatase. Due to	98.29
PRK06696	223	uridine kinase; Validated	98.28
TIGR01487	215	SPP-like sucrose-phosphate phosphatase-like hydrol	98.28
PRK11590	211	hypothetical protein; Provisional	98.27
PRK00698	205	tmk thymidylate kinase; Validated	98.27
PRK05480	209	uridine/cytidine kinase; Provisional	98.25
PRK14730	195	coaE dephospho-CoA kinase; Provisional	98.24
PRK00300	205	gmk guanylate kinase; Provisional	98.23
TIGR00152	188	dephospho-CoA kinase. This model produces scores i	98.23
PRK13975	196	thymidylate kinase; Provisional	98.22
KOG4238|consensus	627		98.21
TIGR02244	343	HAD-IG-Ncltidse HAD superfamily (subfamily IG) hyd	98.21
PRK13973	213	thymidylate kinase; Provisional	98.21
PRK04220	301	2-phosphoglycerate kinase; Provisional	98.2
PRK14738	206	gmk guanylate kinase; Provisional	98.19
cd02022	179	DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2	98.18
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.17
TIGR01482	225	SPP-subfamily Sucrose-phosphate phosphatase subfam	98.17
TIGR02250	156	FCP1_euk FCP1-like phosphatase, phosphatase domain	98.14
PF03668	284	ATP_bind_2: P-loop ATPase protein family; InterPro	98.12
PRK07667	193	uridine kinase; Provisional	98.12
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	98.11
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	98.11
PLN02842	505	nucleotide kinase	98.1
TIGR00041	195	DTMP_kinase thymidylate kinase. Function: phosphor	98.1
TIGR01544	277	HAD-SF-IE haloacid dehalogenase superfamily, subfa	98.1
PLN02924	220	thymidylate kinase	98.08
TIGR01545	210	YfhB_g-proteo haloacid dehalogenase superfamily, s	98.08
PRK06761	282	hypothetical protein; Provisional	98.07
cd01673	193	dNK Deoxyribonucleoside kinase (dNK) catalyzes the	98.05
KOG3347|consensus	176		98.04
PRK00091	307	miaA tRNA delta(2)-isopentenylpyrophosphate transf	98.04
PRK14734	200	coaE dephospho-CoA kinase; Provisional	98.02
PTZ00301	210	uridine kinase; Provisional	97.98
KOG1615|consensus	227		97.98
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	97.97
PLN02165	334	adenylate isopentenyltransferase	97.96
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.96
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.96
PLN02422	232	dephospho-CoA kinase	97.94
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	97.94
PRK13477	512	bifunctional pantoate ligase/cytidylate kinase; Pr	97.92
COG1778	170	Low specificity phosphatase (HAD superfamily) [Gen	97.91
smart00072	184	GuKc Guanylate kinase homologues. Active enzymes c	97.89
PRK14732	196	coaE dephospho-CoA kinase; Provisional	97.89
PF08235	157	LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209	97.87
PRK14733	204	coaE dephospho-CoA kinase; Provisional	97.87
COG0237	201	CoaE Dephospho-CoA kinase [Coenzyme metabolism]	97.85
PF00004	132	AAA: ATPase family associated with various cellula	97.84
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	97.84
PRK14731	208	coaE dephospho-CoA kinase; Provisional	97.84
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.83
cd02030	219	NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO	97.82
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.76
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	97.75
TIGR01485	249	SPP_plant-cyano sucrose-6F-phosphate phosphohydrol	97.75
COG1428	216	Deoxynucleoside kinases [Nucleotide transport and	97.73
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	97.71
COG2074	299	2-phosphoglycerate kinase [Carbohydrate transport	97.71
PLN02772	398	guanylate kinase	97.71
PRK00192	273	mannosyl-3-phosphoglycerate phosphatase; Reviewed	97.71
KOG0234|consensus	438		97.7
COG1660	286	Predicted P-loop-containing kinase [General functi	97.7
PF01121	180	CoaE: Dephospho-CoA kinase; InterPro: IPR001977 Th	97.69
PRK13974	212	thymidylate kinase; Provisional	97.69
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	97.69
PLN02840	421	tRNA dimethylallyltransferase	97.68
TIGR01511	562	ATPase-IB1_Cu copper-(or silver)-translocating P-t	97.68
COG4996	164	Predicted phosphatase [General function prediction	97.63
PLN02348	395	phosphoribulokinase	97.62
PLN02748	468	tRNA dimethylallyltransferase	97.62
COG1936	180	Predicted nucleotide kinase (related to CMP and AM	97.6
PRK04195	482	replication factor C large subunit; Provisional	97.57
TIGR02461	225	osmo_MPG_phos mannosyl-3-phosphoglycerate phosphat	97.56
TIGR00174	287	miaA tRNA isopentenyltransferase (miaA). Catalyzes	97.55
TIGR01525	556	ATPase-IB_hvy heavy metal translocating P-type ATP	97.55
KOG1384|consensus	348		97.54
TIGR00017	217	cmk cytidylate kinase. This family consists of cyt	97.54
PRK03333	395	coaE dephospho-CoA kinase/protein folding accessor	97.51
PRK15453	290	phosphoribulokinase; Provisional	97.51
PRK00771	437	signal recognition particle protein Srp54; Provisi	97.5
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.5
KOG2961|consensus	190		97.49
PF13173	128	AAA_14: AAA domain	97.47
PRK15126	272	thiamin pyrimidine pyrophosphate hydrolase; Provis	97.46
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	97.45
PRK10530	272	pyridoxal phosphate (PLP) phosphatase; Provisional	97.45
PRK14974	336	cell division protein FtsY; Provisional	97.45
PRK05800	170	cobU adenosylcobinamide kinase/adenosylcobinamide-	97.4
PF05496	233	RuvB_N: Holliday junction DNA helicase ruvB N-term	97.39
TIGR00099	256	Cof-subfamily Cof subfamily of IIB subfamily of ha	97.39
TIGR01675	229	plant-AP plant acid phosphatase. This model explic	97.39
PHA00729	226	NTP-binding motif containing protein	97.38
PF03031	159	NIF: NLI interacting factor-like phosphatase; Inte	97.37
TIGR00959	428	ffh signal recognition particle protein. This mode	97.37
COG0324	308	MiaA tRNA delta(2)-isopentenylpyrophosphate transf	97.37
PF06888	234	Put_Phosphatase: Putative Phosphatase; InterPro: I	97.36
PRK09087	226	hypothetical protein; Validated	97.35
PRK10867	433	signal recognition particle protein; Provisional	97.35
PRK03669	271	mannosyl-3-phosphoglycerate phosphatase; Reviewed	97.35
KOG3308|consensus	225		97.34
PF01745	233	IPT: Isopentenyl transferase; InterPro: IPR002648	97.34
PRK12702	302	mannosyl-3-phosphoglycerate phosphatase; Reviewed	97.34
PRK10976	266	putative hydrolase; Provisional	97.33
PRK10513	270	sugar phosphate phosphatase; Provisional	97.33
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	97.32
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.3
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.3
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	97.3
PRK07933	213	thymidylate kinase; Validated	97.29
COG0561	264	Cof Predicted hydrolases of the HAD superfamily [G	97.29
KOG0744|consensus	423		97.29
PRK10416	318	signal recognition particle-docking protein FtsY;	97.29
PRK13976	209	thymidylate kinase; Provisional	97.28
TIGR00064	272	ftsY signal recognition particle-docking protein F	97.28
PF08282	254	Hydrolase_3: haloacid dehalogenase-like hydrolase;	97.27
PRK04296	190	thymidine kinase; Provisional	97.27
TIGR02463	221	MPGP_rel mannosyl-3-phosphoglycerate phosphatase-r	97.26
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	97.26
COG0125	208	Tmk Thymidylate kinase [Nucleotide transport and m	97.26
KOG3877|consensus	393		97.23
PTZ00174	247	phosphomannomutase; Provisional	97.23
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	97.22
PRK06620	214	hypothetical protein; Validated	97.21
TIGR01680	275	Veg_Stor_Prot vegetative storage protein. The prot	97.2
PTZ00451	244	dephospho-CoA kinase; Provisional	97.2
KOG3220|consensus	225		97.19
TIGR01512	536	ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translo	97.18
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.16
COG2256	436	MGS1 ATPase related to the helicase subunit of the	97.16
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	97.14
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.14
PRK06893	229	DNA replication initiation factor; Validated	97.13
TIGR00685	244	T6PP trehalose-phosphatase. At least 18 distinct s	97.13
COG2019	189	AdkA Archaeal adenylate kinase [Nucleotide transpo	97.12
PRK00023	225	cmk cytidylate kinase; Provisional	97.12
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	97.11
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.1
PRK14729	300	miaA tRNA delta(2)-isopentenylpyrophosphate transf	97.08
smart00382	148	AAA ATPases associated with a variety of cellular	97.08
PF03767	229	Acid_phosphat_B: HAD superfamily, subfamily IIIB (	97.08
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	97.08
smart00763	361	AAA_PrkA PrkA AAA domain. This is a family of PrkA	97.06
KOG1532|consensus	366		97.03
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	97.02
COG0283	222	Cmk Cytidylate kinase [Nucleotide transport and me	97.02
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	97.01
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	97.0
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	96.99
PRK05439	311	pantothenate kinase; Provisional	96.98
TIGR01484	204	HAD-SF-IIB HAD-superfamily hydrolase, subfamily II	96.97
PF05152	297	DUF705: Protein of unknown function (DUF705); Inte	96.97
CHL00181	287	cbbX CbbX; Provisional	96.96
TIGR02245	195	HAD_IIID1 HAD-superfamily subfamily IIID hydrolase	96.96
PRK14956	484	DNA polymerase III subunits gamma and tau; Provisi	96.95
TIGR01486	256	HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosph	96.94
KOG0780|consensus	483		96.94
TIGR02237	209	recomb_radB DNA repair and recombination protein R	96.93
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	96.92
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	96.92
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	96.92
COG4359	220	Uncharacterized conserved protein [Function unknow	96.91
KOG1969|consensus	877		96.9
PLN00020	413	ribulose bisphosphate carboxylase/oxygenase activa	96.89
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	96.89
PRK13342	413	recombination factor protein RarA; Reviewed	96.88
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	96.88
COG4087	152	Soluble P-type ATPase [General function prediction	96.87
PRK14962	472	DNA polymerase III subunits gamma and tau; Provisi	96.87
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	96.86
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	96.86
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.86
PLN02887	580	hydrolase family protein	96.86
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.85
PHA02544	316	44 clamp loader, small subunit; Provisional	96.85
PRK08099	399	bifunctional DNA-binding transcriptional repressor	96.85
PRK10671	834	copA copper exporting ATPase; Provisional	96.83
PF02223	186	Thymidylate_kin: Thymidylate kinase; InterPro: IPR	96.82
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	96.81
PRK14960	702	DNA polymerase III subunits gamma and tau; Provisi	96.81
PRK08903	227	DnaA regulatory inactivator Hda; Validated	96.81
PRK14955	397	DNA polymerase III subunits gamma and tau; Provisi	96.81
cd01394	218	radB RadB. The archaeal protein radB shares simila	96.8
TIGR02880	284	cbbX_cfxQ probable Rubsico expression protein CbbX	96.8
PRK14949	944	DNA polymerase III subunits gamma and tau; Provisi	96.79
TIGR03877	237	thermo_KaiC_1 KaiC domain protein, Ph0284 family.	96.79
PRK05642	234	DNA replication initiation factor; Validated	96.79
TIGR00390	441	hslU ATP-dependent protease HslVU, ATPase subunit.	96.76
PRK14963	504	DNA polymerase III subunits gamma and tau; Provisi	96.75
PLN03025	319	replication factor C subunit; Provisional	96.75
KOG1533|consensus	290		96.74
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	96.73
PHA02244	383	ATPase-like protein	96.73
PRK07429	327	phosphoribulokinase; Provisional	96.73
PRK12402	337	replication factor C small subunit 2; Reviewed	96.72
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	96.72
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	96.71
PRK08084	235	DNA replication initiation factor; Provisional	96.68
PF13479	213	AAA_24: AAA domain	96.68
PRK12269	863	bifunctional cytidylate kinase/ribosomal protein S	96.68
PF12710	192	HAD: haloacid dehalogenase-like hydrolase; PDB: 3P	96.67
PRK13768	253	GTPase; Provisional	96.67
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	96.66
CHL00195	489	ycf46 Ycf46; Provisional	96.64
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	96.63
cd03216	163	ABC_Carb_Monos_I This family represents the domain	96.61
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.6
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	96.6
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	96.6
PRK09435	332	membrane ATPase/protein kinase; Provisional	96.59
PRK12323	700	DNA polymerase III subunits gamma and tau; Provisi	96.59
PRK12377	248	putative replication protein; Provisional	96.58
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.58
PRK10187	266	trehalose-6-phosphate phosphatase; Provisional	96.58
PRK14961	363	DNA polymerase III subunits gamma and tau; Provisi	96.58
PRK07003	830	DNA polymerase III subunits gamma and tau; Validat	96.57
PRK08116	268	hypothetical protein; Validated	96.57
PF00910	107	RNA_helicase: RNA helicase; InterPro: IPR000605 He	96.56
PRK07994	647	DNA polymerase III subunits gamma and tau; Validat	96.55
COG2884	223	FtsE Predicted ATPase involved in cell division [C	96.54
PRK05201	443	hslU ATP-dependent protease ATP-binding subunit Hs	96.53
TIGR03878	259	thermo_KaiC_2 KaiC domain protein, AF_0795 family.	96.53
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	96.52
KOG3078|consensus	235		96.52
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	96.52
TIGR03881	229	KaiC_arch_4 KaiC domain protein, PAE1156 family. M	96.52
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	96.51
TIGR02012	321	tigrfam_recA protein RecA. This model describes or	96.51
PRK06645	507	DNA polymerase III subunits gamma and tau; Validat	96.5
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	96.5
PRK08727	233	hypothetical protein; Validated	96.5
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	96.48
PRK14958	509	DNA polymerase III subunits gamma and tau; Provisi	96.47
PRK11860	661	bifunctional 3-phosphoshikimate 1-carboxyvinyltran	96.47
PF06745	226	KaiC: KaiC; InterPro: IPR014774 This entry represe	96.46
COG3769	274	Predicted hydrolase (HAD superfamily) [General fun	96.46
KOG0739|consensus	439		96.46
COG0467	260	RAD55 RecA-superfamily ATPases implicated in signa	96.46
COG1222	406	RPT1 ATP-dependent 26S proteasome regulatory subun	96.46
PRK09361	225	radB DNA repair and recombination protein RadB; Pr	96.45
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	96.45
PRK14964	491	DNA polymerase III subunits gamma and tau; Provisi	96.45
KOG0730|consensus	693		96.44
COG3709	192	Uncharacterized component of phosphonate metabolis	96.43
PRK14502	694	bifunctional mannosyl-3-phosphoglycerate synthase/	96.43
PRK14952	584	DNA polymerase III subunits gamma and tau; Provisi	96.42
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	96.42
KOG0733|consensus	802		96.42
cd01918	149	HprK_C HprK/P, the bifunctional histidine-containi	96.41
PLN02318	656	phosphoribulokinase/uridine kinase	96.41
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	96.41
PRK04328	249	hypothetical protein; Provisional	96.4
PRK14957	546	DNA polymerase III subunits gamma and tau; Provisi	96.39
COG3700	237	AphA Acid phosphatase (class B) [General function	96.39
PRK14969	527	DNA polymerase III subunits gamma and tau; Provisi	96.39
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	96.38
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	96.38
PRK03992	389	proteasome-activating nucleotidase; Provisional	96.38
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	96.37
PLN02796	347	D-glycerate 3-kinase	96.36
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	96.35
PRK08691	709	DNA polymerase III subunits gamma and tau; Validat	96.33
TIGR03689	512	pup_AAA proteasome ATPase. In the Actinobacteria,	96.33
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	96.32
PRK07764	824	DNA polymerase III subunits gamma and tau; Validat	96.32
PRK14954	620	DNA polymerase III subunits gamma and tau; Provisi	96.3
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	96.28
cd01393	226	recA_like RecA is a bacterial enzyme which has rol	96.28
TIGR01242	364	26Sp45 26S proteasome subunit P45 family. Many pro	96.28
cd00983	325	recA RecA is a bacterial enzyme which has roles in	96.27
PF11019	252	DUF2608: Protein of unknown function (DUF2608); In	96.26
PLN02423	245	phosphomannomutase	96.26
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	96.24
KOG3120|consensus	256		96.23
PRK00080	328	ruvB Holliday junction DNA helicase RuvB; Reviewed	96.22
PF05729	166	NACHT: NACHT domain	96.21
PRK14951	618	DNA polymerase III subunits gamma and tau; Provisi	96.21
PF13245	76	AAA_19: Part of AAA domain	96.2
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	96.2
PTZ00454	398	26S protease regulatory subunit 6B-like protein; P	96.18
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	96.18
PRK13886	241	conjugal transfer protein TraL; Provisional	96.18
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.17
TIGR02397	355	dnaX_nterm DNA polymerase III, subunit gamma and t	96.17
cd01122	271	GP4d_helicase GP4d_helicase is a homohexameric 5'-	96.17
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	96.17
PRK11784	345	tRNA 2-selenouridine synthase; Provisional	96.16
PRK08181	269	transposase; Validated	96.16
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	96.16
PRK05342	412	clpX ATP-dependent protease ATP-binding subunit Cl	96.16
TIGR01526	325	nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr	96.16
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	96.15
cd00881	189	GTP_translation_factor GTP translation factor fami	96.14
PTZ00361	438	26 proteosome regulatory subunit 4-like protein; P	96.14
PF03796	259	DnaB_C: DnaB-like helicase C terminal domain; Inte	96.13
TIGR01650	327	PD_CobS cobaltochelatase, CobS subunit. This model	96.13

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=100.00  E-value=1e-69  Score=548.59  Aligned_cols=317  Identities=44%  Similarity=0.781  Sum_probs=289.2

Q ss_pred             CCcEEecCceEEEEecCCCCCCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCc
Q psy4598           3 GSWDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAI   82 (369)
Q Consensus         3 ~~W~~~~~~~~~~~~~~~~~~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi   82 (369)
                      ..|+.++  +|++|+..++..+.|+++||||||||.++||..|+.+++||+++||+|+++|++|+++||+|+|+|||+|+
T Consensus       148 ~~w~~~~--~~~~~~~~~~~~~~Kia~fD~DGTLi~t~sg~~~~~~~~d~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI  225 (526)
T TIGR01663       148 PGWENLE--KLLIFTAAGVKGQEKIAGFDLDGTIIKTKSGKVFPKGPDDWQIIFPEIPEKLKELEADGFKICIFTNQGGI  225 (526)
T ss_pred             ccccccC--ceEEEecCCcCccCcEEEEECCCCccccCCCccCCCCHHHeeecccCHHHHHHHHHHCCCEEEEEECCccc
Confidence            3688886  68999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccc-cCCCC
Q psy4598          83 GRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAAN-WAPKK  161 (369)
Q Consensus        83 ~~~~~~~~~~~~~i~~~l~~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~-~~~~~  161 (369)
                      ++|+++.++++.++..+++.+|++|++++|++.+.||||+||||++++++++.++++++++||||||++||+.. |.+++
T Consensus       226 ~~G~~~~~~~~~ki~~iL~~lgipfdviia~~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDaagr~~~g~~ag~  305 (526)
T TIGR01663       226 ARGKINADDFKAKIEAIVAKLGVPFQVFIAIGAGFYRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDAAGRPANGKAAGK  305 (526)
T ss_pred             ccCcccHHHHHHHHHHHHHHcCCceEEEEeCCCCCCCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCcccchHHHHhcCC
Confidence            99999999999999999999999999999999999999999999999999876678999999999999999865 66654


Q ss_pred             -CCCCCcccHHHHHhCCCCccCchhhccCCCCCCCCCCCCCCcchhccccccCCCCCCCCCCceEEEEEcCCCCCcchhh
Q psy4598         162 -KKDFACTDHLFAFNLNLAFFTPEQIFLNEKAPDFPNLPTFKPREVYQKAQSQTIPNIPHDKKQVLIMIGSQGSGKSSFV  240 (369)
Q Consensus       162 -~~d~s~~D~~~A~n~Gi~f~~pe~~f~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~i~v~~g~~~~gks~~~  240 (369)
                       +|||||+|++||.|+||+|+||||||+++++.++ ..|+|+|+.+.+..+...                ++        
T Consensus       306 ~~~D~s~~D~~FA~n~gi~F~tPee~Fl~~~~~~~-~~~~f~p~~~~~~~~~~~----------------~~--------  360 (526)
T TIGR01663       306 KKKDFSCADRLFAANLGIPFATPEEFFLGKPAAGF-EKPAFDPRSVQDQGPLCD----------------PD--------  360 (526)
T ss_pred             CcCCCChhhHHHHHHcCCcccChHHHhCCCCcccc-cccCCCchhhcccccccC----------------Cc--------
Confidence             7999999999999999999999999999999888 789999988754321110                00        


Q ss_pred             hhccCCCcccccccccccchhhhhhhccccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchhHHHHHHHHHHHH
Q psy4598         241 STYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAAL  320 (369)
Q Consensus       241 ~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~~~~~~~~~~~~l  320 (369)
                             ..                ...+.+|.+|+|+|+|||||||+|+++++..++.+|++|.++.|+.|...++++|
T Consensus       361 -------~~----------------~~~~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~~~~~~~~a~~~L  417 (526)
T TIGR01663       361 -------DL----------------ALDDAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGSTQNCLTACERAL  417 (526)
T ss_pred             -------cc----------------ccCCCCceEEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHHHHHHHHHHHHHH
Confidence                   00                0123457899999999999999999999999999999999999999999999999


Q ss_pred             hCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHcC
Q psy4598         321 DSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK  369 (369)
Q Consensus       321 ~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn~  369 (369)
                      +.|.+||||+||.+++.|..|+++|+++|+++++++|++|.++|++||+
T Consensus       418 ~~G~sVVIDaTn~~~~~R~~~i~lAk~~gv~v~~i~~~~p~e~~~~Rn~  466 (526)
T TIGR01663       418 DQGKRCAIDNTNPDAASRAKFLQCARAAGIPCRCFLFNAPLAQAKHNIA  466 (526)
T ss_pred             hCCCcEEEECCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999984

Note that the EC number for the kinase function is: 2.7.1.78

>KOG2134|consensus

Probab=100.00  E-value=1.8e-57  Score=429.47  Aligned_cols=314  Identities=41%  Similarity=0.686  Sum_probs=285.4

Q ss_pred             CCCcEEecCceEEEEecCCCCCCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCC
Q psy4598           2 KGSWDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGA   81 (369)
Q Consensus         2 ~~~W~~~~~~~~~~~~~~~~~~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~g   81 (369)
                      .+.|...++|.|++++...+....|++.||+|||||+++||..|+.++.||.+++|.++.+|++|++.||+|+|+|||.|
T Consensus        52 ~~~w~~~~ng~L~i~~~~~v~~~~K~i~FD~dgtlI~t~sg~vf~~~~~dw~~l~~~vp~Klktl~~~g~~l~iftnq~~  131 (422)
T KOG2134|consen   52 GGRWSSTENGMLQIFTLPKVNGGSKIIMFDYDGTLIDTKSGKVFPKGSMDWRILFPEVPSKLKTLYQDGIKLFIFTNQNG  131 (422)
T ss_pred             CCCcccccCcceEEeeccccCCCcceEEEecCCceeecCCcceeeccCccceeeccccchhhhhhccCCeEEEEEecccc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCC
Q psy4598          82 IGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKK  161 (369)
Q Consensus        82 i~~~~~~~~~~~~~i~~~l~~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~  161 (369)
                      +.++.+...+|++|+.++++.+++||+++++.....||||.+|||+++.+++|.+..|....|+||||++||+.. ..++
T Consensus       132 i~r~~~~~~~f~~Ki~~i~anl~vPi~~~~A~~~~~yRKP~tGMwe~~~~~~nd~~~Isek~s~fvgdaagr~~~-~~~~  210 (422)
T KOG2134|consen  132 IARGKLELEEFKKKIKAIVANLGVPIQLLAAIIKGKYRKPSTGMWEFLKRLENDSVEISEKASIFVGDAAGRPLD-ALRR  210 (422)
T ss_pred             cccCcchHHHHHHHHHHHHHhcCCceEEeeeccCCcccCcchhHHHHHHHHhhccceeeechhhhhhhhccCccc-cccC
Confidence            999999999999999999999999999999999999999999999999999998889999999999999999987 6799


Q ss_pred             CCCCCcccHHHHHhCCCCccCchhhccCCCCCCCCCCCCCCcchhcc-ccccCCCCCCCCCCceEEEEEcCCCCCcchhh
Q psy4598         162 KKDFACTDHLFAFNLNLAFFTPEQIFLNEKAPDFPNLPTFKPREVYQ-KAQSQTIPNIPHDKKQVLIMIGSQGSGKSSFV  240 (369)
Q Consensus       162 ~~d~s~~D~~~A~n~Gi~f~~pe~~f~~~~~~~~~~~~~f~~~~~~~-~~~~~~~~~~~~~~~~i~v~~g~~~~gks~~~  240 (369)
                      |||||++|++||.|+|++|++|||||+++....| +.|+|+|.+... +.+..   --.....||++++|.||+|||+|+
T Consensus       211 kkd~S~~D~~FAaN~gvkF~tPeefF~g~~~~~~-~~~~fdp~n~i~~~t~~~---~~~~~~~eiV~~vgfp~sGks~f~  286 (422)
T KOG2134|consen  211 KKDHSSADRKFAANAGVKFKTPEEFFLGVGVVTW-NSPGFDPKNVISRATSLC---LKLDGHGEIVVAVGFPGSGKSTFA  286 (422)
T ss_pred             cccccHHHHHHHHhcCCccCCHHHHhcccccccc-CCCCCCchhHHhhhcchh---cccCCCCcEEEEEecCCCCcchhh
Confidence            9999999999999999999999999999998888 899999965543 33322   112344488888888888888888


Q ss_pred             hhccCCCcccccccccccchhhhhhhccccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchhHHHHHHHHHHHH
Q psy4598         241 STYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAAL  320 (369)
Q Consensus       241 ~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~~~~~~~~~~~~l  320 (369)
                      .++..+.+|                                                 .++++|.+..++.|...+.+++
T Consensus       287 a~~~~~~~y-------------------------------------------------~~vn~d~lg~~~~C~~~~~e~l  317 (422)
T KOG2134|consen  287 AKRVVPNGY-------------------------------------------------KIVNADTLGTPQNCLLANAEAL  317 (422)
T ss_pred             hhhcccCce-------------------------------------------------eEeecccCCCchhhHHHHHHHh
Confidence            888777788                                                 5556666666777788899999


Q ss_pred             hCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHcC
Q psy4598         321 DSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK  369 (369)
Q Consensus       321 ~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn~  369 (369)
                      ..+.+||+|+|+++.+.|..++..|++.+++++|+.+.++.|.+.|+++
T Consensus       318 ~~~~sVvidnt~pd~~sr~~~~~~a~e~~~p~rcf~~~~s~eq~~hn~~  366 (422)
T KOG2134|consen  318 KHGKSVVIDNTNPDAESRKYYLDCATEREIPIRCFEMNSSVEQAQHNNR  366 (422)
T ss_pred             hcccEEeeCCCCcchHHHHHHhhhHHHhCccceeeeeccHHHhhhcccc
Confidence            9999999999999999999999999999999999999999999999874

>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []

Probab=100.00  E-value=1.3e-47  Score=334.44  Aligned_cols=157  Identities=50%  Similarity=0.891  Sum_probs=133.7

Q ss_pred             eEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCC--CCCCHHHHHHHHHHHHHHc
Q psy4598          26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGR--KKMSTRDFQAKAEKIIKSL  103 (369)
Q Consensus        26 k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~--~~~~~~~~~~~i~~~l~~l  103 (369)
                      |+|+||||||||.+++|..|++++.||++++|+|+++|++|+++||+|||||||+|+++  +..+.+.+.++++.+++.+
T Consensus         1 Kia~fD~DgTLi~~~s~~~f~~~~~D~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ~gi~~~~~~~~~~~~~~ki~~il~~l   80 (159)
T PF08645_consen    1 KIAFFDLDGTLIKTKSGKKFPKDPDDWKFFPPGVPEALRELHKKGYKIVIVTNQSGIGRGMGEKDLENFHEKIENILKEL   80 (159)
T ss_dssp             SEEEE-SCTTTEE-STSTTS-SSTCGGEEC-TTHHHHHHHHHHTTEEEEEEEE-CCCCCTBTCCHHHHHHHHHHHHHHHC
T ss_pred             CEEEEeCCCCccCCCCCCcCcCCHHHhhhcchhHHHHHHHHHhcCCeEEEEeCccccccccccchHHHHHHHHHHHHHHc
Confidence            79999999999999999999999999999899999999999999999999999999999  6778899999999999999


Q ss_pred             CCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         104 NVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       104 ~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      ++|+.+|+|++.+.||||+||||++++++++.++.+|.++|+||||++||     .++++|||++|++||.|+||+|+||
T Consensus        81 ~ip~~~~~a~~~d~~RKP~~GM~~~~~~~~~~~~~id~~~Sf~VGDaagr-----~~~~~d~s~~D~~fA~N~gi~f~tp  155 (159)
T PF08645_consen   81 GIPIQVYAAPHKDPCRKPNPGMWEFALKDYNDGVEIDLANSFYVGDAAGR-----SKKKKDFSDSDRKFALNCGIKFYTP  155 (159)
T ss_dssp             TS-EEEEECGCSSTTSTTSSHHHHHHCCCTSTT--S-CCC-EEEESSCHC-----TB-S--S--HHHHHHHHHT--EE-H
T ss_pred             CCceEEEecCCCCCCCCCchhHHHHHHHhccccccccccceEEEeccCCC-----CCcccccChhHHHHHHHcCCcccCh
Confidence            99999999999999999999999999999987778999999999999998     5679999999999999999999999


Q ss_pred             hhhc
Q psy4598         184 EQIF  187 (369)
Q Consensus       184 e~~f  187 (369)
                      ||||
T Consensus       156 e~~f  159 (159)
T PF08645_consen  156 EEFF  159 (159)
T ss_dssp             HHHH
T ss_pred             hhcC
Confidence            9998

; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....

>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase

Probab=100.00  E-value=4.6e-32  Score=238.27  Aligned_cols=164  Identities=52%  Similarity=0.899  Sum_probs=149.3

Q ss_pred             EEEEecCCCCCCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHH
Q psy4598          13 LLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDF   92 (369)
Q Consensus        13 ~~~~~~~~~~~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~   92 (369)
                      |++|.++++....|+++||+||||+.+.++..|+..+++|+.+|||+.++|++|+++||+++|+|||++.+++..+.+.+
T Consensus         1 ~~~~~~~~~~~~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~~~~~~~~   80 (166)
T TIGR01664         1 LFVFTADGPKPQSKVAAFDLDGTLITTRSGKVFPTSASDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRGKLSAESF   80 (166)
T ss_pred             CeeecCCCCCCcCcEEEEeCCCceEecCCCCcccCChHHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccCcccHHHH
Confidence            47899999999899999999999999888778999999999889999999999999999999999999999998888888


Q ss_pred             HHHHHHHHHHcCCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCcc--ccCCccEEeeCccccccccCCCCCCCCCcccH
Q psy4598          93 QAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLA--IDISQSFYAGDAAGRAANWAPKKKKDFACTDH  170 (369)
Q Consensus        93 ~~~i~~~l~~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~--i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~  170 (369)
                      ..+++.+++.+|+++..+++++...++||+|++++++++++    +  +++++|+||||+.+|        |-+|+..|+
T Consensus        81 ~~~i~~~l~~~gl~~~~ii~~~~~~~~KP~p~~~~~~~~~~----~~~~~~~~~v~VGD~~~~--------~~~~~~~Di  148 (166)
T TIGR01664        81 KNKIEAFLEKLKVPIQVLAATHAGLYRKPMTGMWEYLQSQY----NSPIKMTRSFYVGDAAGR--------KLDFSDADI  148 (166)
T ss_pred             HHHHHHHHHHcCCCEEEEEecCCCCCCCCccHHHHHHHHHc----CCCCCchhcEEEECCCCC--------CCCCchhHH
Confidence            88899999999998877777777778999999999999986    5  899999999999854        335567799


Q ss_pred             HHHHhCCCCccCchhhcc
Q psy4598         171 LFAFNLNLAFFTPEQIFL  188 (369)
Q Consensus       171 ~~A~n~Gi~f~~pe~~f~  188 (369)
                      ++|+++||+|+.+|+||+
T Consensus       149 ~aA~~aGi~~~~~~~~~~  166 (166)
T TIGR01664       149 KFAKNLGLEFKYPEEFFL  166 (166)
T ss_pred             HHHHHCCCCcCChHHhcC
Confidence            999999999999999995

The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.

>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]

Probab=99.97  E-value=1.9e-30  Score=228.00  Aligned_cols=133  Identities=32%  Similarity=0.438  Sum_probs=123.4

Q ss_pred             ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHH---HHHHHHH
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQA---KAEKIIK  101 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~---~i~~~l~  101 (369)
                      .|++|+|+||||+.+.++  |....++|. |.|++.++|.+|.+.||++||+|||+||++|+++.++|..   +|..+|+
T Consensus         5 ~k~lflDRDGtin~d~~~--yv~~~~~~~-~~~g~i~al~~l~~~gy~lVvvTNQsGi~rgyf~~~~f~~~~~~m~~~l~   81 (181)
T COG0241           5 QKALFLDRDGTINIDKGD--YVDSLDDFQ-FIPGVIPALLKLQRAGYKLVVVTNQSGIGRGYFTEADFDKLHNKMLKILA   81 (181)
T ss_pred             CcEEEEcCCCceecCCCc--ccCcHHHhc-cCccHHHHHHHHHhCCCeEEEEECCCCccccCccHHHHHHHHHHHHHHHH
Confidence            689999999999999865  999999998 6999999999999999999999999999999999999987   4778888


Q ss_pred             HcCCCeE-EEEecC----CCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhC
Q psy4598         102 SLNVPVQ-MFVATQ----YDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNL  176 (369)
Q Consensus       102 ~l~i~~~-~~~~~~----~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~  176 (369)
                      ..|+.|+ +++|++    .|.||||+||||+.+++++    ++|+++|+||||+.                +|+++|.|+
T Consensus        82 ~~gv~id~i~~Cph~p~~~c~cRKP~~gm~~~~~~~~----~iD~~~s~~VGD~~----------------~Dlq~a~n~  141 (181)
T COG0241          82 SQGVKIDGILYCPHHPEDNCDCRKPKPGMLLSALKEY----NIDLSRSYVVGDRL----------------TDLQAAENA  141 (181)
T ss_pred             HcCCccceEEECCCCCCCCCcccCCChHHHHHHHHHh----CCCccceEEecCcH----------------HHHHHHHHC
Confidence            9999886 888986    4789999999999999997    69999999999999                899999999


Q ss_pred             CCCc
Q psy4598         177 NLAF  180 (369)
Q Consensus       177 Gi~f  180 (369)
                      ||+.
T Consensus       142 gi~~  145 (181)
T COG0241         142 GIKG  145 (181)
T ss_pred             CCCc
Confidence            9993

>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional

Probab=99.94  E-value=6.1e-27  Score=227.32  Aligned_cols=187  Identities=26%  Similarity=0.317  Sum_probs=149.9

Q ss_pred             CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHH---HHHHHHH
Q psy4598          24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQ---AKAEKII  100 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~---~~i~~~l  100 (369)
                      +.|+++||+||||+.+.++ .|.....+...++||+.+.|.+|+++||+++|+|||+|++.+++.++.+.   ..+..++
T Consensus         1 ~~k~l~lDrDgtl~~~~~~-~y~~~~~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~~~~~~~~l~~~~~~i~~iL   79 (354)
T PRK05446          1 MQKILFIDRDGTLIEEPPT-DFQVDSLDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGTDSFPQEDFDPPHNLMMQIF   79 (354)
T ss_pred             CCcEEEEeCCCCccCCCCc-cccccCcccceECcCHHHHHHHHHhCCCeEEEEECCccccCccccHHHHhhHHHHHHHHH
Confidence            3689999999999998864 45444444444799999999999999999999999999999998887764   3677889


Q ss_pred             HHcCCCeE-EEEec----CCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHh
Q psy4598         101 KSLNVPVQ-MFVAT----QYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFN  175 (369)
Q Consensus       101 ~~l~i~~~-~~~~~----~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n  175 (369)
                      +.++++|+ +++++    +++.+|||+|+||.++++++    ++++++|+||||+.                +|+++|+|
T Consensus        80 ~~~gl~fd~i~i~~~~~sd~~~~rKP~p~~l~~a~~~l----~v~~~~svmIGDs~----------------sDi~aAk~  139 (354)
T PRK05446         80 ESQGIKFDEVLICPHFPEDNCSCRKPKTGLVEEYLAEG----AIDLANSYVIGDRE----------------TDVQLAEN  139 (354)
T ss_pred             HHcCCceeeEEEeCCcCcccCCCCCCCHHHHHHHHHHc----CCCcccEEEEcCCH----------------HHHHHHHH
Confidence            99999985 56664    56779999999999999885    68999999999998                89999999


Q ss_pred             CCCCccCchhhccCCCCCCCCCCCCCCcchhccccccCCCCCCCCCCceEEEEEcCCCCCcchhhh
Q psy4598         176 LNLAFFTPEQIFLNEKAPDFPNLPTFKPREVYQKAQSQTIPNIPHDKKQVLIMIGSQGSGKSSFVS  241 (369)
Q Consensus       176 ~Gi~f~~pe~~f~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~i~v~~g~~~~gks~~~~  241 (369)
                      +||+++....       ..+ +++  +++.++....+...+.+.|+||+|.|.+.++|+|++++..
T Consensus       140 aGi~~I~v~~-------~~~-~~~--~i~~~l~~~~r~~~~~R~t~et~i~~~l~ldg~g~~~i~t  195 (354)
T PRK05446        140 MGIKGIRYAR-------ETL-NWD--AIAEQLTKRDRYAHVVRNTKETDIDVEVWLDREGKSKINT  195 (354)
T ss_pred             CCCeEEEEEC-------CCC-CHH--HHHHHHhcCCceEEEEecccceEEEEEEEeCCCCceeeec
Confidence            9999976521       112 112  3344444444455678899999999999999999876544

>TIGR01261 hisB_Nterm histidinol-phosphatase

Probab=99.94  E-value=1.8e-26  Score=201.76  Aligned_cols=139  Identities=25%  Similarity=0.335  Sum_probs=119.9

Q ss_pred             ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHH---HHHHHHHH
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQ---AKAEKIIK  101 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~---~~i~~~l~  101 (369)
                      .|+++||+||||+.+.++..|...+.+|. ++|||.++|++|+++||+++|+|||+|+++++.+...+.   ..+..+++
T Consensus         1 ~~~~~~d~dg~l~~~~~~~~~~~~~~~~~-~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~~~~~~~~~~~~~~~~~l~   79 (161)
T TIGR01261         1 QKILFIDRDGTLIEEPPSDFQVDALEKLR-FEKGVIPALLKLKKAGYKFVMVTNQDGLGTPSFPQADFDGPHNLMLQIFR   79 (161)
T ss_pred             CCEEEEeCCCCccccCCCccccCCHHHee-ECCCHHHHHHHHHHCCCeEEEEeCCccccCCcCCHHHHHHHHHHHHHHHH
Confidence            48999999999999987633444445554 799999999999999999999999999999988887754   47888999


Q ss_pred             HcCCCeE-EEEe----cCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhC
Q psy4598         102 SLNVPVQ-MFVA----TQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNL  176 (369)
Q Consensus       102 ~l~i~~~-~~~~----~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~  176 (369)
                      .+|++|+ +++|    ++...++||+|+||+.+++++    ++++++|+||||+.                .|+++|+++
T Consensus        80 ~~gl~fd~ii~~~~~~~~~~~~~KP~~~~~~~~~~~~----~~~~~e~l~IGD~~----------------~Di~~A~~a  139 (161)
T TIGR01261        80 SQGIIFDDVLICPHFPDDNCDCRKPKIKLLEPYLKKN----LIDKARSYVIGDRE----------------TDMQLAENL  139 (161)
T ss_pred             HCCCceeEEEECCCCCCCCCCCCCCCHHHHHHHHHHc----CCCHHHeEEEeCCH----------------HHHHHHHHC
Confidence            9999986 5666    477889999999999999986    68999999999998                899999999


Q ss_pred             CCCccCch
Q psy4598         177 NLAFFTPE  184 (369)
Q Consensus       177 Gi~f~~pe  184 (369)
                      ||+++...
T Consensus       140 Gi~~i~~~  147 (161)
T TIGR01261       140 GIRGIQYD  147 (161)
T ss_pred             CCeEEEEC
Confidence            99996543

This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.

>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase

Probab=99.90  E-value=1.9e-23  Score=185.22  Aligned_cols=131  Identities=24%  Similarity=0.350  Sum_probs=111.8

Q ss_pred             eEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHH---HHHHHHHHHHHH
Q psy4598          26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTR---DFQAKAEKIIKS  102 (369)
Q Consensus        26 k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~---~~~~~i~~~l~~  102 (369)
                      |++|||+||||+.+.   .|.....+|+ ++||+.++|++|+++||+++|+|||++++++.+...   .+...+..++..
T Consensus         2 ~~~~~D~Dgtl~~~~---~~~~~~~~~~-~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~~~~~~~~~~~~~~~~~l~~   77 (176)
T TIGR00213         2 KAIFLDRDGTINIDH---GYVHEIDNFE-FIDGVIDALRELKKMGYALVLVTNQSGIARGYFTEAQFEQLTEWMDWSLAE   77 (176)
T ss_pred             CEEEEeCCCCEeCCC---CCCCCHHHeE-ECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHHHH
Confidence            789999999999643   5778888998 699999999999999999999999999888777654   344566777888


Q ss_pred             cCCCeEE-EEec----------CCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHH
Q psy4598         103 LNVPVQM-FVAT----------QYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHL  171 (369)
Q Consensus       103 l~i~~~~-~~~~----------~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~  171 (369)
                      +++.|+. +.|.          +.+.++||+|+||..+++++    ++++++|+||||+.                .|++
T Consensus        78 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~KP~p~~~~~a~~~~----~~~~~~~v~VGDs~----------------~Di~  137 (176)
T TIGR00213        78 RDVDLDGIYYCPHHPEGVEEFRQVCDCRKPKPGMLLQARKEL----HIDMAQSYMVGDKL----------------EDMQ  137 (176)
T ss_pred             cCCCccEEEECCCCCcccccccCCCCCCCCCHHHHHHHHHHc----CcChhhEEEEcCCH----------------HHHH
Confidence            8888864 4443          24568999999999999996    79999999999998                8999


Q ss_pred             HHHhCCCCc
Q psy4598         172 FAFNLNLAF  180 (369)
Q Consensus       172 ~A~n~Gi~f  180 (369)
                      +|+++|+++
T Consensus       138 aA~~aG~~~  146 (176)
T TIGR00213       138 AGVAAKVKT  146 (176)
T ss_pred             HHHHCCCcE
Confidence            999999997

This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).

>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain

Probab=99.90  E-value=6.5e-23  Score=176.64  Aligned_cols=134  Identities=28%  Similarity=0.423  Sum_probs=115.6

Q ss_pred             eEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHH---HHHHHHHHH
Q psy4598          26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQ---AKAEKIIKS  102 (369)
Q Consensus        26 k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~---~~i~~~l~~  102 (369)
                      ++++||+||||+.+.++. |.....+|+ ++||+.+.|+.|+++||+++|+||+++.+++++..+.++   ..+..+++.
T Consensus         1 ~~~~~d~dgtl~~~~~~~-~~~~~~~~~-~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~~~~~~~~~~~~~~~~~l~~   78 (147)
T TIGR01656         1 PALFLDRDGVINEDTVSD-YPRSLDDWQ-LRPGAVPALLTLRAAGYTVVVVTNQSGIGRGYFSAEAFRAPNGRVLELLRQ   78 (147)
T ss_pred             CeEEEeCCCceeccCCcc-cCCCHHHeE-EcCChHHHHHHHHHCCCEEEEEeCCCcccCCcCCHHHHHHHHHHHHHHHHh
Confidence            578999999999999876 888888887 699999999999999999999999988877777766665   467778899


Q ss_pred             cCCCeE-EEEe----cCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCC
Q psy4598         103 LNVPVQ-MFVA----TQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLN  177 (369)
Q Consensus       103 l~i~~~-~~~~----~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~G  177 (369)
                      +|+++. .|.+    .+...++||+|+||+++++++    ++++++|+||||+.                .|+++|+|+|
T Consensus        79 ~~l~~~~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~----~~~~~e~i~IGDs~----------------~Di~~A~~~G  138 (147)
T TIGR01656        79 LGVAVDGVLFCPHHPADNCSCRKPKPGLILEALKRL----GVDASRSLVVGDRL----------------RDLQAARNAG  138 (147)
T ss_pred             CCCceeEEEECCCCCCCCCCCCCCCHHHHHHHHHHc----CCChHHEEEEcCCH----------------HHHHHHHHCC
Confidence            999864 3443    234567899999999999986    68999999999998                8999999999


Q ss_pred             CCcc
Q psy4598         178 LAFF  181 (369)
Q Consensus       178 i~f~  181 (369)
                      |+++
T Consensus       139 i~~v  142 (147)
T TIGR01656       139 LAAV  142 (147)
T ss_pred             CCEE
Confidence            9986

This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.

>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated

Probab=99.86  E-value=2.1e-21  Score=172.86  Aligned_cols=137  Identities=20%  Similarity=0.275  Sum_probs=115.5

Q ss_pred             CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHH---HHHHHHHH
Q psy4598          24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDF---QAKAEKII  100 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~---~~~i~~~l  100 (369)
                      +.|+++||+||||+.+.  ..|.....+|. ++||+.+.|++|+++|++++|+||+++++++.+....+   .+.+..++
T Consensus         2 ~~~~~~~d~~~t~~~~~--~~~~~~~~~~~-~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~~~~~~~~~~~~~~~~~~l   78 (181)
T PRK08942          2 SMKAIFLDRDGVINVDS--DGYVKSPDEWI-PIPGSIEAIARLKQAGYRVVVATNQSGIARGLFTEAQLNALHEKMDWSL   78 (181)
T ss_pred             CccEEEEECCCCcccCC--ccccCCHHHeE-ECCCHHHHHHHHHHCCCEEEEEeCCccccCCcCCHHHHHHHHHHHHHHH
Confidence            57999999999998664  46888899998 69999999999999999999999999887777665544   35667778


Q ss_pred             HHcCCCeEE-EEec----CCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHh
Q psy4598         101 KSLNVPVQM-FVAT----QYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFN  175 (369)
Q Consensus       101 ~~l~i~~~~-~~~~----~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n  175 (369)
                      +.+|+.|+. +.+.    +....+||+|.||..+++++    ++++++++||||+.                .|+++|++
T Consensus        79 ~~~g~~f~~i~~~~~~~~~~~~~~KP~p~~~~~~~~~l----~~~~~~~~~VgDs~----------------~Di~~A~~  138 (181)
T PRK08942         79 ADRGGRLDGIYYCPHHPEDGCDCRKPKPGMLLSIAERL----NIDLAGSPMVGDSL----------------RDLQAAAA  138 (181)
T ss_pred             HHcCCccceEEECCCCCCCCCcCCCCCHHHHHHHHHHc----CCChhhEEEEeCCH----------------HHHHHHHH
Confidence            888987764 4432    33568999999999999986    78999999999998                89999999


Q ss_pred             CCCCccCc
Q psy4598         176 LNLAFFTP  183 (369)
Q Consensus       176 ~Gi~f~~p  183 (369)
                      +|+.++..
T Consensus       139 aG~~~i~v  146 (181)
T PRK08942        139 AGVTPVLV  146 (181)
T ss_pred             CCCeEEEE
Confidence            99998654

>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA

Probab=99.83  E-value=7.5e-20  Score=154.27  Aligned_cols=127  Identities=35%  Similarity=0.522  Sum_probs=102.6

Q ss_pred             eEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC
Q psy4598          26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV  105 (369)
Q Consensus        26 k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i  105 (369)
                      |+++||+||||+..   ..|.. ...+..++|++.+.|++|+++|++++|+||++++.+++    .+...+..+++.+++
T Consensus         1 k~~~~D~dgtL~~~---~~~~~-~~~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~----~~~~~~~~~l~~~~l   72 (132)
T TIGR01662         1 KGVVLDLDGTLTDD---VPYVD-DEDERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGK----FSSGRVARRLEELGV   72 (132)
T ss_pred             CEEEEeCCCceecC---CCCCC-CHHHheeCCCHHHHHHHHHHCCCEEEEEECCccccccH----HHHHHHHHHHHHCCC
Confidence            68999999999942   33444 33444579999999999999999999999987665442    145667888999999


Q ss_pred             CeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeC-ccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         106 PVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGD-AAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       106 ~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD-~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      ++...+.+.  ..+||+|++|++++++++   ++++++++|||| ..                .|+.+|+++|++++
T Consensus        73 ~~~~~~~~~--~~~KP~~~~~~~~~~~~~---~~~~~~~v~IGD~~~----------------~Di~~A~~~Gi~~i  128 (132)
T TIGR01662        73 PIDVLYACP--HCRKPKPGMFLEALKRFN---EIDPEESVYVGDQDL----------------TDLQAAKRAGLAFI  128 (132)
T ss_pred             CEEEEEECC--CCCCCChHHHHHHHHHcC---CCChhheEEEcCCCc----------------ccHHHHHHCCCeEE
Confidence            876544444  578999999999999851   389999999999 56                89999999999985

In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.

>PRK06769 hypothetical protein; Validated

Probab=99.81  E-value=1.2e-19  Score=160.64  Aligned_cols=131  Identities=22%  Similarity=0.273  Sum_probs=102.8

Q ss_pred             CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHc
Q psy4598          24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSL  103 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l  103 (369)
                      .-|+++||+||||+..    .+.....++. ++|||.+.|++|+++||+++|+||++++..++.....+    ...++.+
T Consensus         3 ~~~~~~~d~d~~~~~~----~~~~~~~~~~-~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~----~~~l~~~   73 (173)
T PRK06769          3 NIQAIFIDRDGTIGGD----TTIHYPGSFT-LFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADF----VQELKGF   73 (173)
T ss_pred             CCcEEEEeCCCcccCC----CCCCCHHHeE-ECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHH----HHHHHhC
Confidence            3589999999999754    3344445666 69999999999999999999999998776665543333    2335666


Q ss_pred             CCCeEEEEe----cCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCC
Q psy4598         104 NVPVQMFVA----TQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLA  179 (369)
Q Consensus       104 ~i~~~~~~~----~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~  179 (369)
                      |+. .++.+    .+....+||+|+||..+++++    ++++++|+||||+.                .|+++|+++|++
T Consensus        74 g~~-~~~~~~~~~~~~~~~~KP~p~~~~~~~~~l----~~~p~~~i~IGD~~----------------~Di~aA~~aGi~  132 (173)
T PRK06769         74 GFD-DIYLCPHKHGDGCECRKPSTGMLLQAAEKH----GLDLTQCAVIGDRW----------------TDIVAAAKVNAT  132 (173)
T ss_pred             CcC-EEEECcCCCCCCCCCCCCCHHHHHHHHHHc----CCCHHHeEEEcCCH----------------HHHHHHHHCCCe
Confidence            653 33443    344578999999999999996    68999999999998                899999999999


Q ss_pred             ccCch
Q psy4598         180 FFTPE  184 (369)
Q Consensus       180 f~~pe  184 (369)
                      ++...
T Consensus       133 ~i~v~  137 (173)
T PRK06769        133 TILVR  137 (173)
T ss_pred             EEEEe
Confidence            97553

>PLN03243 haloacid dehalogenase-like hydrolase; Provisional

Probab=99.72  E-value=1.5e-17  Score=156.43  Aligned_cols=97  Identities=11%  Similarity=0.138  Sum_probs=85.6

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++||+.+.|++|++.||+++|+||++            ...+..+++.+|+  +|+.+++.++...+||+|.+|..++++
T Consensus       110 l~pg~~e~L~~L~~~g~~l~I~Tn~~------------~~~~~~~l~~~gl~~~Fd~ii~~~d~~~~KP~Pe~~~~a~~~  177 (260)
T PLN03243        110 LRPGSREFVQALKKHEIPIAVASTRP------------RRYLERAIEAVGMEGFFSVVLAAEDVYRGKPDPEMFMYAAER  177 (260)
T ss_pred             cCCCHHHHHHHHHHCCCEEEEEeCcC------------HHHHHHHHHHcCCHhhCcEEEecccCCCCCCCHHHHHHHHHH
Confidence            58999999999999999999999964            2345667788888  488888888888899999999999999


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      +    ++++++|+||||+.                .|+++|+++||+++..
T Consensus       178 l----~~~p~~~l~IgDs~----------------~Di~aA~~aG~~~i~v  208 (260)
T PLN03243        178 L----GFIPERCIVFGNSN----------------SSVEAAHDGCMKCVAV  208 (260)
T ss_pred             h----CCChHHeEEEcCCH----------------HHHHHHHHcCCEEEEE
Confidence            6    79999999999999                8999999999998644

>PLN02770 haloacid dehalogenase-like hydrolase family protein

Probab=99.71  E-value=1.6e-17  Score=155.29  Aligned_cols=97  Identities=16%  Similarity=0.145  Sum_probs=85.9

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++||+.+.|+.|+++|++++|+||.+            ...++..++.+|+.  |+.+++.++....||+|.+|..++++
T Consensus       109 l~pgv~e~L~~L~~~g~~l~I~Tn~~------------~~~~~~~l~~~gl~~~Fd~iv~~~~~~~~KP~p~~~~~a~~~  176 (248)
T PLN02770        109 PLNGLYKLKKWIEDRGLKRAAVTNAP------------RENAELMISLLGLSDFFQAVIIGSECEHAKPHPDPYLKALEV  176 (248)
T ss_pred             cCccHHHHHHHHHHcCCeEEEEeCCC------------HHHHHHHHHHcCChhhCcEEEecCcCCCCCCChHHHHHHHHH
Confidence            58999999999999999999999953            33456677888884  88889998888899999999999999


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      +    ++++++++||||+.                .|+++|+++|++++..
T Consensus       177 ~----~~~~~~~l~vgDs~----------------~Di~aA~~aGi~~i~v  207 (248)
T PLN02770        177 L----KVSKDHTFVFEDSV----------------SGIKAGVAAGMPVVGL  207 (248)
T ss_pred             h----CCChhHEEEEcCCH----------------HHHHHHHHCCCEEEEE
Confidence            6    68999999999999                8999999999999644

>COG0546 Gph Predicted phosphatases [General function prediction only]

Probab=99.71  E-value=2.4e-17  Score=151.32  Aligned_cols=100  Identities=23%  Similarity=0.293  Sum_probs=86.7

Q ss_pred             cccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHH
Q psy4598          54 LLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQ  131 (369)
Q Consensus        54 ~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~  131 (369)
                      .++||+.++|..|+++||+++|+||.+            ...+..+++.+|+  +|+++++......+||+|.++..+++
T Consensus        89 ~~~~gv~e~L~~L~~~g~~l~i~T~k~------------~~~~~~~l~~~gl~~~F~~i~g~~~~~~~KP~P~~l~~~~~  156 (220)
T COG0546          89 RLFPGVKELLAALKSAGYKLGIVTNKP------------ERELDILLKALGLADYFDVIVGGDDVPPPKPDPEPLLLLLE  156 (220)
T ss_pred             ccCCCHHHHHHHHHhCCCeEEEEeCCc------------HHHHHHHHHHhCCccccceEEcCCCCCCCCcCHHHHHHHHH
Confidence            369999999999999999999999954            2345677888887  58888887788899999999999999


Q ss_pred             HhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCchh
Q psy4598         132 EKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPEQ  185 (369)
Q Consensus       132 ~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~pe~  185 (369)
                      .+    ++++++++||||+.                .|+++|+|+|++++...-
T Consensus       157 ~~----~~~~~~~l~VGDs~----------------~Di~aA~~Ag~~~v~v~~  190 (220)
T COG0546         157 KL----GLDPEEALMVGDSL----------------NDILAAKAAGVPAVGVTW  190 (220)
T ss_pred             Hh----CCChhheEEECCCH----------------HHHHHHHHcCCCEEEEEC
Confidence            96    57778999999999                899999999999876543

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=99.70  E-value=5.6e-17  Score=137.97  Aligned_cols=95  Identities=33%  Similarity=0.513  Sum_probs=83.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch--------------------hHHHHHHHHHHHHhCCCcEEEeCCCC
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG--------------------SWQKCVSVMKAALDSGLSVVVDNTNP  333 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~--------------------~~~~~~~~~~~~l~~g~~vIiD~tn~  333 (369)
                      +|+|+|+|||||||+++.|.+.+++.+|+.|.++                    .++.+...+...++.|.++|+|++|.
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~vvd~~~~   80 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRRLAGEDPPSPSDYIEAEERAYQILNAAIRKALRNGNSVVVDNTNL   80 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHHHCCSSSGCCCCCHHHHHHHHHHHHHHHHHHHHTT-EEEEESS--
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHHHcccccccchhHHHHHHHHHHHHHHHHHHHHHcCCCceeccCcC
Confidence            6899999999999999999999999999999974                    13345567778889999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         334 DKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       334 ~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      ..+.|..+.++++++++++.+|+|++|.+++.+|+
T Consensus        81 ~~~~r~~~~~~~~~~~~~~~~v~l~~~~~~~~~R~  115 (143)
T PF13671_consen   81 SREERARLRELARKHGYPVRVVYLDAPEETLRERL  115 (143)
T ss_dssp             SHHHHHHHHHHHHHCTEEEEEEEECHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCeEEEEEEECCHHHHHHHH
Confidence            99999999999999999999999999999999986

...

>PRK13226 phosphoglycolate phosphatase; Provisional

Probab=99.70  E-value=3e-17  Score=151.50  Aligned_cols=97  Identities=22%  Similarity=0.238  Sum_probs=83.6

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++||+.+.|+.|+++|++++|+||++.            ..+..+++.+|+.  |+++++.+....+||+|.+|.+++++
T Consensus        96 ~~pg~~~~L~~L~~~g~~l~i~Tn~~~------------~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~  163 (229)
T PRK13226         96 LFDGVEGMLQRLECAGCVWGIVTNKPE------------YLARLILPQLGWEQRCAVLIGGDTLAERKPHPLPLLVAAER  163 (229)
T ss_pred             eCCCHHHHHHHHHHCCCeEEEECCCCH------------HHHHHHHHHcCchhcccEEEecCcCCCCCCCHHHHHHHHHH
Confidence            689999999999999999999999541            2334567778873  77788887777899999999999998


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      +    ++++++|+||||+.                .|+++|+++|++++..
T Consensus       164 l----~~~p~~~l~IGDs~----------------~Di~aA~~aG~~~i~v  194 (229)
T PRK13226        164 I----GVAPTDCVYVGDDE----------------RDILAARAAGMPSVAA  194 (229)
T ss_pred             h----CCChhhEEEeCCCH----------------HHHHHHHHCCCcEEEE
Confidence            6    78999999999998                8999999999999754

>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253

Probab=99.69  E-value=1e-16  Score=146.37  Aligned_cols=99  Identities=18%  Similarity=0.254  Sum_probs=84.3

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++||+.+.|++|+++|++++|+||..            ...+...++.+|+  +|+.++++++...+||+|.+|..++++
T Consensus        95 ~~~g~~~~L~~L~~~g~~~~i~Tn~~------------~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~  162 (221)
T TIGR02253        95 VYPGVRDTLMELRESGYRLGIITDGL------------PVKQWEKLERLGVRDFFDAVITSEEEGVEKPHPKIFYAALKR  162 (221)
T ss_pred             CCCCHHHHHHHHHHCCCEEEEEeCCc------------hHHHHHHHHhCChHHhccEEEEeccCCCCCCCHHHHHHHHHH
Confidence            68999999999999999999999943            1233455677887  488888888888999999999999998


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCch
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPE  184 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~pe  184 (369)
                      +    ++++++++||||+..               .|+.+|+++|++++...
T Consensus       163 ~----~~~~~~~~~igDs~~---------------~di~~A~~aG~~~i~~~  195 (221)
T TIGR02253       163 L----GVKPEEAVMVGDRLD---------------KDIKGAKNLGMKTVWIN  195 (221)
T ss_pred             c----CCChhhEEEECCChH---------------HHHHHHHHCCCEEEEEC
Confidence            6    789999999999972               69999999999997543

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).

>PRK13288 pyrophosphatase PpaX; Provisional

Probab=99.69  E-value=5.7e-17  Score=147.77  Aligned_cols=97  Identities=19%  Similarity=0.142  Sum_probs=85.2

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++||+.+.|+.|+++|++++|+||..            ...+..+++.+|+.  |+.+++.+....+||+|.++..++++
T Consensus        83 ~~~g~~~~l~~L~~~g~~~~i~S~~~------------~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~p~~~~~~~~~  150 (214)
T PRK13288         83 EYETVYETLKTLKKQGYKLGIVTTKM------------RDTVEMGLKLTGLDEFFDVVITLDDVEHAKPDPEPVLKALEL  150 (214)
T ss_pred             cCcCHHHHHHHHHHCCCeEEEEeCCC------------HHHHHHHHHHcCChhceeEEEecCcCCCCCCCcHHHHHHHHH
Confidence            57999999999999999999999943            33456677888883  88888888888999999999999998


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      +    ++++++++||||+.                .|+++|+++|++++..
T Consensus       151 ~----~~~~~~~~~iGDs~----------------~Di~aa~~aG~~~i~v  181 (214)
T PRK13288        151 L----GAKPEEALMVGDNH----------------HDILAGKNAGTKTAGV  181 (214)
T ss_pred             c----CCCHHHEEEECCCH----------------HHHHHHHHCCCeEEEE
Confidence            6    68899999999999                8999999999998654

>COG4639 Predicted kinase [General function prediction only]

Probab=99.69  E-value=2e-16  Score=134.22  Aligned_cols=97  Identities=25%  Similarity=0.387  Sum_probs=86.3

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch------------------hHHHHHHHHHHHHhCCCcEEEeCCC
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG------------------SWQKCVSVMKAALDSGLSVVVDNTN  332 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~------------------~~~~~~~~~~~~l~~g~~vIiD~tn  332 (369)
                      |+.+++|+|+|||||||+|+......  ..|+.|+++                  .|+.+.+.++..+..|+..|+|+||
T Consensus         1 ~~~LvvL~G~~~sGKsT~ak~n~~~~--~~lsld~~r~~lg~~~~~e~sqk~~~~~~~~l~~~l~qrl~~Gk~tiidAtn   78 (168)
T COG4639           1 MRILVVLRGASGSGKSTFAKENFLQN--YVLSLDDLRLLLGVSASKENSQKNDELVWDILYKQLEQRLRRGKFTIIDATN   78 (168)
T ss_pred             CceEEEEecCCCCchhHHHHHhCCCc--ceecHHHHHHHhhhchhhhhccccHHHHHHHHHHHHHHHHHcCCeEEEEccc
Confidence            46799999999999999999977654  456666653                  3677788889999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHcC
Q psy4598         333 PDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK  369 (369)
Q Consensus       333 ~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn~  369 (369)
                      ..++.|+.++.+|+++|+....++|++|.++|.+||+
T Consensus        79 ~rr~~r~~l~~La~~y~~~~~~ivfdtp~~~c~aRNk  115 (168)
T COG4639          79 LRREDRRKLIDLAKAYGYKIYAIVFDTPLELCLARNK  115 (168)
T ss_pred             CCHHHHHHHHHHHHHhCCeEEEEEEeCCHHHHHHHhh
Confidence            9999999999999999999999999999999999984

>PRK11587 putative phosphatase; Provisional

Probab=99.68  E-value=5.9e-17  Score=148.28  Aligned_cols=97  Identities=16%  Similarity=0.174  Sum_probs=81.5

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC-eEEEEecCCCCCCCCchhHHHHHHHHh
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP-VQMFVATQYDRYRKPVPGMWEYLSQEK  133 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~-~~~~~~~~~~~~rKP~~gm~~~~~~~~  133 (369)
                      ++||+.+.|+.|+++|++++|+||.+.            ......++..++. ++.+++.++...+||+|.+|..+++++
T Consensus        84 ~~pg~~e~L~~L~~~g~~~~ivTn~~~------------~~~~~~l~~~~l~~~~~i~~~~~~~~~KP~p~~~~~~~~~~  151 (218)
T PRK11587         84 ALPGAIALLNHLNKLGIPWAIVTSGSV------------PVASARHKAAGLPAPEVFVTAERVKRGKPEPDAYLLGAQLL  151 (218)
T ss_pred             eCcCHHHHHHHHHHcCCcEEEEcCCCc------------hHHHHHHHhcCCCCccEEEEHHHhcCCCCCcHHHHHHHHHc
Confidence            589999999999999999999999531            1223445666663 567778777778999999999999986


Q ss_pred             cCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         134 NGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       134 ~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                          ++.|++|+||||+.                .|+++|+++|++++..
T Consensus       152 ----g~~p~~~l~igDs~----------------~di~aA~~aG~~~i~v  181 (218)
T PRK11587        152 ----GLAPQECVVVEDAP----------------AGVLSGLAAGCHVIAV  181 (218)
T ss_pred             ----CCCcccEEEEecch----------------hhhHHHHHCCCEEEEE
Confidence                78999999999999                8999999999998654

>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II

Probab=99.68  E-value=6.3e-17  Score=145.61  Aligned_cols=96  Identities=16%  Similarity=0.261  Sum_probs=84.7

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|++|+++||+++|+||.+            ...+..+++.+|+  +|+.+++++....+||+|.+|..++++
T Consensus        93 ~~~~~~~~L~~L~~~g~~~~i~Sn~~------------~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~  160 (198)
T TIGR01428        93 PHPDVPAGLRALKERGYRLAILSNGS------------PAMLKSLVKHAGLDDPFDAVLSADAVRAYKPAPQVYQLALEA  160 (198)
T ss_pred             CCCCHHHHHHHHHHCCCeEEEEeCCC------------HHHHHHHHHHCCChhhhheeEehhhcCCCCCCHHHHHHHHHH
Confidence            57999999999999999999999953            2345566788888  588888888888999999999999998


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    +++|++++||||+.                .|+++|+++||+++.
T Consensus       161 ~----~~~p~~~~~vgD~~----------------~Di~~A~~~G~~~i~  190 (198)
T TIGR01428       161 L----GVPPDEVLFVASNP----------------WDLGGAKKFGFKTAW  190 (198)
T ss_pred             h----CCChhhEEEEeCCH----------------HHHHHHHHCCCcEEE
Confidence            6    78999999999999                899999999999864

Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.

>PLN02575 haloacid dehalogenase-like hydrolase

Probab=99.68  E-value=8.3e-17  Score=157.65  Aligned_cols=97  Identities=14%  Similarity=0.171  Sum_probs=87.0

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++||+.+.|+.|+++|++++|+||.+            ...++.+++.+|+  +|+.+++.++....||+|.+|.+++++
T Consensus       217 l~pGa~ElL~~Lk~~GiklaIaSn~~------------~~~~~~~L~~lgL~~yFd~Iv~sddv~~~KP~Peifl~A~~~  284 (381)
T PLN02575        217 LRTGSQEFVNVLMNYKIPMALVSTRP------------RKTLENAIGSIGIRGFFSVIVAAEDVYRGKPDPEMFIYAAQL  284 (381)
T ss_pred             cCcCHHHHHHHHHHCCCeEEEEeCCC------------HHHHHHHHHHcCCHHHceEEEecCcCCCCCCCHHHHHHHHHH
Confidence            58999999999999999999999943            3456777888998  489999998888899999999999999


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      +    ++++++|+||||+.                .|+++|+++||+++..
T Consensus       285 l----gl~Peecl~IGDS~----------------~DIeAAk~AGm~~IgV  315 (381)
T PLN02575        285 L----NFIPERCIVFGNSN----------------QTVEAAHDARMKCVAV  315 (381)
T ss_pred             c----CCCcccEEEEcCCH----------------HHHHHHHHcCCEEEEE
Confidence            6    79999999999998                8999999999999654

>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase

Probab=99.67  E-value=2.4e-16  Score=142.35  Aligned_cols=95  Identities=16%  Similarity=0.228  Sum_probs=81.7

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++||+.++|+.|+++|++++|+||...             .+...++.+|+  .|+.++++....++||+|.+|.+++++
T Consensus       106 ~~~g~~~~l~~L~~~g~~~~i~Sn~~~-------------~~~~~l~~~~l~~~fd~i~~s~~~~~~KP~~~~~~~~~~~  172 (203)
T TIGR02252       106 VYPDAIKLLKDLRERGLILGVISNFDS-------------RLRGLLEALGLLEYFDFVVTSYEVGAEKPDPKIFQEALER  172 (203)
T ss_pred             eCcCHHHHHHHHHHCCCEEEEEeCCch-------------hHHHHHHHCCcHHhcceEEeecccCCCCCCHHHHHHHHHH
Confidence            589999999999999999999999531             12445677887  588888888888999999999999998


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      +    ++++++++||||+..               .|+++|+++|++++
T Consensus       173 ~----~~~~~~~~~IgD~~~---------------~Di~~A~~aG~~~i  202 (203)
T TIGR02252       173 A----GISPEEALHIGDSLR---------------NDYQGARAAGWRAL  202 (203)
T ss_pred             c----CCChhHEEEECCCch---------------HHHHHHHHcCCeee
Confidence            6    789999999999962               69999999999875

Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.

>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein

Probab=99.66  E-value=1.6e-16  Score=143.77  Aligned_cols=98  Identities=18%  Similarity=0.227  Sum_probs=85.1

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++||+.+.|++|+++|++++|+||.+            ...+...++.+|+  .|+.++++++...+||+|.+|..++++
T Consensus        76 ~~~g~~~~L~~L~~~g~~~~i~Sn~~------------~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~~  143 (205)
T TIGR01454        76 VFPGVPELLAELRADGVGTAIATGKS------------GPRARSLLEALGLLPLFDHVIGSDEVPRPKPAPDIVREALRL  143 (205)
T ss_pred             cCCCHHHHHHHHHHCCCeEEEEeCCc------------hHHHHHHHHHcCChhheeeEEecCcCCCCCCChHHHHHHHHH
Confidence            58999999999999999999999953            2234566788888  488888888778899999999999998


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCch
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPE  184 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~pe  184 (369)
                      +    ++++++++||||+.                .|+++|+++||+++...
T Consensus       144 ~----~~~~~~~l~igD~~----------------~Di~aA~~~Gi~~i~~~  175 (205)
T TIGR01454       144 L----DVPPEDAVMVGDAV----------------TDLASARAAGTATVAAL  175 (205)
T ss_pred             c----CCChhheEEEcCCH----------------HHHHHHHHcCCeEEEEE
Confidence            6    78999999999998                89999999999987543

The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.

>PRK14988 GMP/IMP nucleotidase; Provisional

Probab=99.66  E-value=2.3e-16  Score=145.24  Aligned_cols=94  Identities=12%  Similarity=0.254  Sum_probs=81.4

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++||+.+.|+.|+++|++++|+||.+            ...+...++.+|+  .|+.+++++....+||+|.+|+.++++
T Consensus        94 ~~~g~~e~L~~Lk~~g~~~~i~Tn~~------------~~~~~~~l~~~~l~~~fd~iv~s~~~~~~KP~p~~~~~~~~~  161 (224)
T PRK14988         94 LREDTVPFLEALKASGKRRILLTNAH------------PHNLAVKLEHTGLDAHLDLLLSTHTFGYPKEDQRLWQAVAEH  161 (224)
T ss_pred             cCCCHHHHHHHHHhCCCeEEEEeCcC------------HHHHHHHHHHCCcHHHCCEEEEeeeCCCCCCCHHHHHHHHHH
Confidence            58999999999999999999999943            2234445677777  378788888788899999999999998


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF  180 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f  180 (369)
                      +    ++++++|+||||+.                .|+++|+++||++
T Consensus       162 ~----~~~p~~~l~igDs~----------------~di~aA~~aG~~~  189 (224)
T PRK14988        162 T----GLKAERTLFIDDSE----------------PILDAAAQFGIRY  189 (224)
T ss_pred             c----CCChHHEEEEcCCH----------------HHHHHHHHcCCeE
Confidence            6    78999999999998                8999999999986

>PRK13478 phosphonoacetaldehyde hydrolase; Provisional

Probab=99.65  E-value=6.1e-16  Score=145.99  Aligned_cols=98  Identities=12%  Similarity=0.025  Sum_probs=80.5

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcC---CCeEEEEecCCCCCCCCchhHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLN---VPVQMFVATQYDRYRKPVPGMWEYLSQ  131 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~---i~~~~~~~~~~~~~rKP~~gm~~~~~~  131 (369)
                      ++||+.+.|+.|+++|++++|+||.+            +..+..+++.++   +.++.+++.++....||+|.+|..+++
T Consensus       102 ~~pg~~elL~~L~~~g~~l~I~T~~~------------~~~~~~~l~~~~l~~~~~d~i~~~~~~~~~KP~p~~~~~a~~  169 (267)
T PRK13478        102 PIPGVLEVIAALRARGIKIGSTTGYT------------REMMDVVVPLAAAQGYRPDHVVTTDDVPAGRPYPWMALKNAI  169 (267)
T ss_pred             CCCCHHHHHHHHHHCCCEEEEEcCCc------------HHHHHHHHHHHhhcCCCceEEEcCCcCCCCCCChHHHHHHHH
Confidence            58999999999999999999999943            122344445443   335788888888889999999999999


Q ss_pred             HhcCCcccc-CCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCch
Q psy4598         132 EKNGDLAID-ISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPE  184 (369)
Q Consensus       132 ~~~~~~~i~-~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~pe  184 (369)
                      ++    +++ +++|+||||+.                .|+++|+++|++++...
T Consensus       170 ~l----~~~~~~e~l~IGDs~----------------~Di~aA~~aG~~~i~v~  203 (267)
T PRK13478        170 EL----GVYDVAACVKVDDTV----------------PGIEEGLNAGMWTVGVI  203 (267)
T ss_pred             Hc----CCCCCcceEEEcCcH----------------HHHHHHHHCCCEEEEEc
Confidence            86    675 68999999999                89999999999997653

>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic

Probab=99.65  E-value=2.3e-16  Score=143.22  Aligned_cols=98  Identities=19%  Similarity=0.243  Sum_probs=85.0

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++||+.+.|+.|+++|++++|+||.+            ...+..+++.+|+  .|+.+++.+.....||+|.+|..++++
T Consensus        86 ~~~g~~~~L~~l~~~g~~~~i~S~~~------------~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~p~~~~~~~~~  153 (213)
T TIGR01449        86 VFPGVEATLGALRAKGLRLGLVTNKP------------TPLARPLLELLGLAKYFSVLIGGDSLAQRKPHPDPLLLAAER  153 (213)
T ss_pred             cCCCHHHHHHHHHHCCCeEEEEeCCC------------HHHHHHHHHHcCcHhhCcEEEecCCCCCCCCChHHHHHHHHH
Confidence            68999999999999999999999943            2345666788887  478888888778899999999999999


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCch
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPE  184 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~pe  184 (369)
                      +    ++++++++||||+.                .|+++|+++|++++...
T Consensus       154 ~----~~~~~~~~~igDs~----------------~d~~aa~~aG~~~i~v~  185 (213)
T TIGR01449       154 L----GVAPQQMVYVGDSR----------------VDIQAARAAGCPSVLLT  185 (213)
T ss_pred             c----CCChhHeEEeCCCH----------------HHHHHHHHCCCeEEEEc
Confidence            6    68999999999998                89999999999997543

This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).

>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase

Probab=99.64  E-value=6.7e-16  Score=144.42  Aligned_cols=97  Identities=14%  Similarity=0.042  Sum_probs=81.7

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--C-eEEEEecCCCCCCCCchhHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--P-VQMFVATQYDRYRKPVPGMWEYLSQ  131 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~-~~~~~~~~~~~~rKP~~gm~~~~~~  131 (369)
                      ++||+.+.|+.|+++|++++|+||.+            ...+..+++.+|+  . ++.+++.++...+||+|.+|..+++
T Consensus       100 ~~pg~~e~L~~L~~~g~~l~IvT~~~------------~~~~~~~l~~~gl~~~f~d~ii~~~~~~~~KP~p~~~~~a~~  167 (253)
T TIGR01422       100 PIPGVIEVIAYLRARGIKIGSTTGYT------------REMMDVVAPEAALQGYRPDYNVTTDDVPAGRPAPWMALKNAI  167 (253)
T ss_pred             cCCCHHHHHHHHHHCCCeEEEECCCc------------HHHHHHHHHHHHhcCCCCceEEccccCCCCCCCHHHHHHHHH
Confidence            58999999999999999999999942            2334555666555  2 4788888888899999999999999


Q ss_pred             HhcCCcccc-CCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         132 EKNGDLAID-ISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       132 ~~~~~~~i~-~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      ++    ++. +++|+||||+.                .|+++|+++||+++..
T Consensus       168 ~l----~~~~~~~~l~IGDs~----------------~Di~aA~~aGi~~i~v  200 (253)
T TIGR01422       168 EL----GVYDVAACVKVGDTV----------------PDIEEGRNAGMWTVGL  200 (253)
T ss_pred             Hc----CCCCchheEEECCcH----------------HHHHHHHHCCCeEEEE
Confidence            86    674 89999999999                8999999999999754

This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.

>TIGR03351 PhnX-like phosphonatase-like hydrolase

Probab=99.64  E-value=4.1e-16  Score=142.54  Aligned_cols=97  Identities=16%  Similarity=0.220  Sum_probs=82.8

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC----eEEEEecCCCCCCCCchhHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP----VQMFVATQYDRYRKPVPGMWEYLS  130 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~----~~~~~~~~~~~~rKP~~gm~~~~~  130 (369)
                      ++||+.+.|+.|+++|++++|+||..            ...+..+++.+|+.    |+.+++.++....||+|.+|..++
T Consensus        88 l~~G~~~~L~~L~~~g~~~~ivT~~~------------~~~~~~~l~~~~l~~~~~f~~i~~~~~~~~~KP~p~~~~~a~  155 (220)
T TIGR03351        88 ALPGAEEAFRSLRSSGIKVALTTGFD------------RDTAERLLEKLGWTVGDDVDAVVCPSDVAAGRPAPDLILRAM  155 (220)
T ss_pred             cCCCHHHHHHHHHHCCCEEEEEeCCc------------hHHHHHHHHHhhhhhhccCCEEEcCCcCCCCCCCHHHHHHHH
Confidence            78999999999999999999999942            23445566777764    788888888788999999999999


Q ss_pred             HHhcCCcccc-CCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc-cCc
Q psy4598         131 QEKNGDLAID-ISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF-FTP  183 (369)
Q Consensus       131 ~~~~~~~~i~-~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f-~~p  183 (369)
                      +++    ++. +++++||||+.                .|+++|+++||.+ +..
T Consensus       156 ~~~----~~~~~~~~~~igD~~----------------~Di~aa~~aG~~~~i~~  190 (220)
T TIGR03351       156 ELT----GVQDVQSVAVAGDTP----------------NDLEAGINAGAGAVVGV  190 (220)
T ss_pred             HHc----CCCChhHeEEeCCCH----------------HHHHHHHHCCCCeEEEE
Confidence            986    676 79999999999                8999999999998 543

This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the

>PRK10826 2-deoxyglucose-6-phosphatase; Provisional

Probab=99.63  E-value=3.7e-16  Score=143.31  Aligned_cols=97  Identities=12%  Similarity=0.164  Sum_probs=84.5

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++||+.+.|+.|+++|++++|+||..            ...++.+++.+++  .|+.+++.+....+||+|.+|..++++
T Consensus        93 ~~~g~~~~l~~l~~~g~~~~i~S~~~------------~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~  160 (222)
T PRK10826         93 LLPGVREALALCKAQGLKIGLASASP------------LHMLEAVLTMFDLRDYFDALASAEKLPYSKPHPEVYLNCAAK  160 (222)
T ss_pred             CCCCHHHHHHHHHHCCCeEEEEeCCc------------HHHHHHHHHhCcchhcccEEEEcccCCCCCCCHHHHHHHHHH
Confidence            68999999999999999999999943            2345566777887  478888888888999999999999999


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      +    ++++++|+||||+.                .|+++|+++|++++..
T Consensus       161 ~----~~~~~~~~~igDs~----------------~Di~aA~~aG~~~i~v  191 (222)
T PRK10826        161 L----GVDPLTCVALEDSF----------------NGMIAAKAARMRSIVV  191 (222)
T ss_pred             c----CCCHHHeEEEcCCh----------------hhHHHHHHcCCEEEEe
Confidence            6    78999999999999                8999999999998643

>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED

Probab=99.63  E-value=5.3e-16  Score=136.98  Aligned_cols=95  Identities=15%  Similarity=0.226  Sum_probs=80.1

Q ss_pred             cccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHH
Q psy4598          54 LLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQ  131 (369)
Q Consensus        54 ~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~  131 (369)
                      .++|++.+.|+.|+++|++++|+||...         ..    ..++..+|+  .|+.+++++....+||+|.+|+.+++
T Consensus        85 ~~~~g~~~~l~~l~~~g~~~~i~Tn~~~---------~~----~~~~~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~~~  151 (183)
T TIGR01509        85 KPLPGVEPLLEALRARGKKLALLTNSPR---------DH----AVLVQELGLRDLFDVVIFSGDVGRGKPDPDIYLLALK  151 (183)
T ss_pred             ccCcCHHHHHHHHHHCCCeEEEEeCCch---------HH----HHHHHhcCCHHHCCEEEEcCCCCCCCCCHHHHHHHHH
Confidence            3579999999999999999999999541         11    223344777  38888888888899999999999999


Q ss_pred             HhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         132 EKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       132 ~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      ++    ++++++++||||+.                .|+++|+++|++++
T Consensus       152 ~~----~~~~~~~~~vgD~~----------------~di~aA~~~G~~~i  181 (183)
T TIGR01509       152 KL----GLKPEECLFVDDSP----------------AGIEAAKAAGMHTV  181 (183)
T ss_pred             Hc----CCCcceEEEEcCCH----------------HHHHHHHHcCCEEE
Confidence            86    68999999999999                89999999999876

HAD subfamilies caused by an overly broad single model.

>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase

Probab=99.63  E-value=3.9e-16  Score=138.44  Aligned_cols=94  Identities=16%  Similarity=0.187  Sum_probs=81.9

Q ss_pred             cccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHH
Q psy4598          54 LLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQ  131 (369)
Q Consensus        54 ~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~  131 (369)
                      .++||+.+.|+.|+++|++++|+||+              ..+..+++.+|+.  |+.+++.+....+||+|.++..+++
T Consensus        88 ~~~~g~~~~l~~l~~~g~~i~i~S~~--------------~~~~~~l~~~~l~~~f~~v~~~~~~~~~kp~~~~~~~~~~  153 (185)
T TIGR02009        88 EVLPGIENFLKRLKKKGIAVGLGSSS--------------KNADRILAKLGLTDYFDAIVDADEVKEGKPHPETFLLAAE  153 (185)
T ss_pred             CCCcCHHHHHHHHHHcCCeEEEEeCc--------------hhHHHHHHHcChHHHCCEeeehhhCCCCCCChHHHHHHHH
Confidence            36899999999999999999999993              1245567778873  8888888878889999999999999


Q ss_pred             HhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         132 EKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       132 ~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      ++    ++++++++||||+.                .|+++|+++||+++
T Consensus       154 ~~----~~~~~~~v~IgD~~----------------~di~aA~~~G~~~i  183 (185)
T TIGR02009       154 LL----GVSPNECVVFEDAL----------------AGVQAARAAGMFAV  183 (185)
T ss_pred             Hc----CCCHHHeEEEeCcH----------------hhHHHHHHCCCeEe
Confidence            86    68899999999998                89999999999876

All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).

>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional

Probab=99.62  E-value=5.6e-16  Score=137.99  Aligned_cols=95  Identities=18%  Similarity=0.121  Sum_probs=80.3

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|+ .+.|..|++. ++++|+||.+            ...+...++.+|+  +|+.+++.++...+||+|.+|+.++++
T Consensus        89 ~~~~-~e~L~~L~~~-~~l~I~T~~~------------~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~  154 (188)
T PRK10725         89 PLPL-IEVVKAWHGR-RPMAVGTGSE------------SAIAEALLAHLGLRRYFDAVVAADDVQHHKPAPDTFLRCAQL  154 (188)
T ss_pred             CccH-HHHHHHHHhC-CCEEEEcCCc------------hHHHHHHHHhCCcHhHceEEEehhhccCCCCChHHHHHHHHH
Confidence            3564 5889998765 9999999943            2345667788888  489899998888999999999999999


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      +    ++++++++||||+.                .|+++|+++|++++..
T Consensus       155 ~----~~~~~~~l~igDs~----------------~di~aA~~aG~~~i~~  185 (188)
T PRK10725        155 M----GVQPTQCVVFEDAD----------------FGIQAARAAGMDAVDV  185 (188)
T ss_pred             c----CCCHHHeEEEeccH----------------hhHHHHHHCCCEEEee
Confidence            6    68899999999998                8999999999999764

>PRK09449 dUMP phosphatase; Provisional

Probab=99.61  E-value=1.2e-15  Score=139.78  Aligned_cols=96  Identities=16%  Similarity=0.148  Sum_probs=80.4

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++||+.+.|+.|+ +||+++|+||..            ...+...++.+|+  .|+.++++++...+||+|.+|+.++++
T Consensus        96 ~~~g~~~~L~~L~-~~~~~~i~Tn~~------------~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~~~~~~~~  162 (224)
T PRK09449         96 PLPGAVELLNALR-GKVKMGIITNGF------------TELQQVRLERTGLRDYFDLLVISEQVGVAKPDVAIFDYALEQ  162 (224)
T ss_pred             cCccHHHHHHHHH-hCCeEEEEeCCc------------HHHHHHHHHhCChHHHcCEEEEECccCCCCCCHHHHHHHHHH
Confidence            6899999999999 689999999932            2234556778887  488888888888999999999999998


Q ss_pred             hcCCcccc-CCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         133 KNGDLAID-ISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       133 ~~~~~~i~-~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    ++. +++++||||+..               .|+++|+++||+++.
T Consensus       163 ~----~~~~~~~~~~vgD~~~---------------~Di~~A~~aG~~~i~  194 (224)
T PRK09449        163 M----GNPDRSRVLMVGDNLH---------------SDILGGINAGIDTCW  194 (224)
T ss_pred             c----CCCCcccEEEEcCCcH---------------HHHHHHHHCCCcEEE
Confidence            6    564 478999999972               599999999999864

>PLN02940 riboflavin kinase

Probab=99.61  E-value=8.5e-16  Score=152.20  Aligned_cols=97  Identities=12%  Similarity=0.175  Sum_probs=82.6

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHH-HcCC--CeEEEEecCCCCCCCCchhHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIK-SLNV--PVQMFVATQYDRYRKPVPGMWEYLSQ  131 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~-~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~  131 (369)
                      ++||+.+.|+.|+++|++++|+||.+            ...+...++ .+|+  +|+.+++.++...+||+|.+|..+++
T Consensus        94 l~pGv~elL~~Lk~~g~~l~IvTn~~------------~~~~~~~l~~~~gl~~~Fd~ii~~d~v~~~KP~p~~~~~a~~  161 (382)
T PLN02940         94 ALPGANRLIKHLKSHGVPMALASNSP------------RANIEAKISCHQGWKESFSVIVGGDEVEKGKPSPDIFLEAAK  161 (382)
T ss_pred             CCcCHHHHHHHHHHCCCcEEEEeCCc------------HHHHHHHHHhccChHhhCCEEEehhhcCCCCCCHHHHHHHHH
Confidence            57999999999999999999999953            122334444 4566  48899999988899999999999999


Q ss_pred             HhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         132 EKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       132 ~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      ++    ++++++|+||||+.                .|+++|+++||+++..
T Consensus       162 ~l----gv~p~~~l~VGDs~----------------~Di~aA~~aGi~~I~v  193 (382)
T PLN02940        162 RL----NVEPSNCLVIEDSL----------------PGVMAGKAAGMEVIAV  193 (382)
T ss_pred             Hc----CCChhHEEEEeCCH----------------HHHHHHHHcCCEEEEE
Confidence            96    78999999999999                8999999999998543

>PRK06762 hypothetical protein; Provisional

Probab=99.60  E-value=6.2e-15  Score=129.07  Aligned_cols=99  Identities=14%  Similarity=0.167  Sum_probs=84.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC--CcEEEeCCcchh-------------HHHHHHHHHHHHhCCCcEEEeCCCCCH
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL--NYTTVNRDTLGS-------------WQKCVSVMKAALDSGLSVVVDNTNPDK  335 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~--~~~~i~~D~~~~-------------~~~~~~~~~~~l~~g~~vIiD~tn~~~  335 (369)
                      ||++|+|+|+|||||||+|+.|++.+  ++.+++.|.++.             ++.+...++..++.|.+||+|+++...
T Consensus         1 m~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~vild~~~~~~   80 (166)
T PRK06762          1 MTTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDMLRVKDGPGNLSIDLIEQLVRYGLGHCEFVILEGILNSD   80 (166)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhccccCCCCCcCHHHHHHHHHHHHhCCCEEEEchhhccH
Confidence            68999999999999999999999987  688899998852             223345555667889999999998888


Q ss_pred             HHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHcC
Q psy4598         336 ESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK  369 (369)
Q Consensus       336 ~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn~  369 (369)
                      ..|..+..+++.+++++.++|+++|.++|.+|++
T Consensus        81 ~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~  114 (166)
T PRK06762         81 RYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHS  114 (166)
T ss_pred             hHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHh
Confidence            8888888899999999999999999999999973

>PRK13223 phosphoglycolate phosphatase; Provisional

Probab=99.60  E-value=2.8e-15  Score=142.05  Aligned_cols=97  Identities=16%  Similarity=0.302  Sum_probs=83.4

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++||+.+.|+.|+++|++++|+||.+            ...+..+++.+++  .|+.+++.+.....||+|.+++.++++
T Consensus       102 ~~~g~~e~L~~Lk~~g~~l~ivTn~~------------~~~~~~~l~~~~i~~~f~~i~~~d~~~~~Kp~p~~~~~~~~~  169 (272)
T PRK13223        102 VYPGVRDTLKWLKKQGVEMALITNKP------------ERFVAPLLDQMKIGRYFRWIIGGDTLPQKKPDPAALLFVMKM  169 (272)
T ss_pred             cCCCHHHHHHHHHHCCCeEEEEECCc------------HHHHHHHHHHcCcHhhCeEEEecCCCCCCCCCcHHHHHHHHH
Confidence            58999999999999999999999953            1245566777777  378788887777899999999999998


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      +    ++++++++||||+.                .|+++|+++||+++..
T Consensus       170 ~----g~~~~~~l~IGD~~----------------~Di~aA~~aGi~~i~v  200 (272)
T PRK13223        170 A----GVPPSQSLFVGDSR----------------SDVLAAKAAGVQCVAL  200 (272)
T ss_pred             h----CCChhHEEEECCCH----------------HHHHHHHHCCCeEEEE
Confidence            6    68999999999998                8999999999998654

>TIGR01990 bPGM beta-phosphoglucomutase

Probab=99.59  E-value=7.6e-16  Score=136.57  Aligned_cols=95  Identities=13%  Similarity=0.138  Sum_probs=81.6

Q ss_pred             cccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHH
Q psy4598          54 LLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQ  131 (369)
Q Consensus        54 ~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~  131 (369)
                      .++||+.+.|+.|+++|++++|+||...              ....++.+|+.  |+.++++++....||+|.+|+.+++
T Consensus        87 ~~~pg~~~~L~~L~~~g~~~~i~s~~~~--------------~~~~l~~~~l~~~f~~~~~~~~~~~~kp~p~~~~~~~~  152 (185)
T TIGR01990        87 DVLPGIKNLLDDLKKNNIKIALASASKN--------------APTVLEKLGLIDYFDAIVDPAEIKKGKPDPEIFLAAAE  152 (185)
T ss_pred             ccCccHHHHHHHHHHCCCeEEEEeCCcc--------------HHHHHHhcCcHhhCcEEEehhhcCCCCCChHHHHHHHH
Confidence            3689999999999999999999999321              12346777874  8888888888889999999999999


Q ss_pred             HhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         132 EKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       132 ~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      ++    ++++++++||||+.                .|+++|+++||+++.
T Consensus       153 ~~----~~~~~~~v~vgD~~----------------~di~aA~~aG~~~i~  183 (185)
T TIGR01990       153 GL----GVSPSECIGIEDAQ----------------AGIEAIKAAGMFAVG  183 (185)
T ss_pred             Hc----CCCHHHeEEEecCH----------------HHHHHHHHcCCEEEe
Confidence            86    68999999999998                899999999999864

The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.

>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668

Probab=99.59  E-value=7.1e-15  Score=129.69  Aligned_cols=113  Identities=20%  Similarity=0.195  Sum_probs=90.6

Q ss_pred             CCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHH
Q psy4598          23 NSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKS  102 (369)
Q Consensus        23 ~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~  102 (369)
                      ...+++++|+||||....+          + .++|++.+.|++|++.|++++|+||+++           ...+..+++.
T Consensus        23 ~~v~~vv~D~Dgtl~~~~~----------~-~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~-----------~~~~~~~~~~   80 (170)
T TIGR01668        23 VGIKGVVLDKDNTLVYPDH----------N-EAYPALRDWIEELKAAGRKLLIVSNNAG-----------EQRAKAVEKA   80 (170)
T ss_pred             CCCCEEEEecCCccccCCC----------C-CcChhHHHHHHHHHHcCCEEEEEeCCch-----------HHHHHHHHHH
Confidence            5668999999999986532          2 2699999999999999999999999642           1233455567


Q ss_pred             cCCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         103 LNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       103 l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +|+.+.       ....||+|.+|..+++++    ++++++++||||+..               +|+++|+++||+++.
T Consensus        81 ~gl~~~-------~~~~KP~p~~~~~~l~~~----~~~~~~~l~IGDs~~---------------~Di~aA~~aGi~~i~  134 (170)
T TIGR01668        81 LGIPVL-------PHAVKPPGCAFRRAHPEM----GLTSEQVAVVGDRLF---------------TDVMGGNRNGSYTIL  134 (170)
T ss_pred             cCCEEE-------cCCCCCChHHHHHHHHHc----CCCHHHEEEECCcch---------------HHHHHHHHcCCeEEE
Confidence            776421       135799999999999986    688999999999972               599999999999875


Q ss_pred             c
Q psy4598         183 P  183 (369)
Q Consensus       183 p  183 (369)
                      .
T Consensus       135 v  135 (170)
T TIGR01668       135 V  135 (170)
T ss_pred             E
Confidence            4

This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.

>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254

Probab=99.59  E-value=2.6e-15  Score=137.04  Aligned_cols=98  Identities=14%  Similarity=0.159  Sum_probs=83.3

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++||+.+.|++|++. ++++|+||..            ...+..+++.+++  .|+.+++++....+||+|.+++.++++
T Consensus        98 ~~~g~~~~L~~l~~~-~~~~i~Sn~~------------~~~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~~~~  164 (224)
T TIGR02254        98 LLPGAFELMENLQQK-FRLYIVTNGV------------RETQYKRLRKSGLFPFFDDIFVSEDAGIQKPDKEIFNYALER  164 (224)
T ss_pred             eCccHHHHHHHHHhc-CcEEEEeCCc------------hHHHHHHHHHCCcHhhcCEEEEcCccCCCCCCHHHHHHHHHH
Confidence            689999999999999 9999999942            2344566788888  488888888888999999999999998


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      ++   ++++++++||||+..               .|+++|+++||+++..
T Consensus       165 ~~---~~~~~~~v~igD~~~---------------~di~~A~~~G~~~i~~  197 (224)
T TIGR02254       165 MP---KFSKEEVLMIGDSLT---------------ADIKGGQNAGLDTCWM  197 (224)
T ss_pred             hc---CCCchheEEECCCcH---------------HHHHHHHHCCCcEEEE
Confidence            41   588999999999962               5999999999998643

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.

>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase

Probab=99.58  E-value=4.4e-15  Score=132.15  Aligned_cols=92  Identities=20%  Similarity=0.254  Sum_probs=77.5

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCC----CCCchhHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRY----RKPVPGMWEY  128 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~----rKP~~gm~~~  128 (369)
                      ++||+.+.|++|+   ++++|+||++            ...+...++.+|+  +|+.++++++...    .||+|.+|++
T Consensus        85 ~~~g~~~~L~~L~---~~~~i~Tn~~------------~~~~~~~l~~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~  149 (184)
T TIGR01993        85 PDPELRNLLLRLP---GRKIIFTNGD------------RAHARRALNRLGIEDCFDGIFCFDTANPDYLLPKPSPQAYEK  149 (184)
T ss_pred             CCHHHHHHHHhCC---CCEEEEeCCC------------HHHHHHHHHHcCcHhhhCeEEEeecccCccCCCCCCHHHHHH
Confidence            5789999999997   6899999954            2345666788888  5887777766555    5999999999


Q ss_pred             HHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         129 LSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       129 ~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      +++++    ++++++++||||+.                .|+++|+++|++++
T Consensus       150 ~~~~~----~~~~~~~l~vgD~~----------------~di~aA~~~G~~~i  182 (184)
T TIGR01993       150 ALREA----GVDPERAIFFDDSA----------------RNIAAAKALGMKTV  182 (184)
T ss_pred             HHHHh----CCCccceEEEeCCH----------------HHHHHHHHcCCEEe
Confidence            99986    78999999999998                89999999999976

These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.58  E-value=1.8e-14  Score=137.95  Aligned_cols=99  Identities=27%  Similarity=0.397  Sum_probs=86.3

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC-CcEEEeCCcchhH---------------------HHHHHHHHHHHhCCCcEEE
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL-NYTTVNRDTLGSW---------------------QKCVSVMKAALDSGLSVVV  328 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~-~~~~i~~D~~~~~---------------------~~~~~~~~~~l~~g~~vIi  328 (369)
                      |+++|+|+|+|||||||+|+.|++++ ++.+|+.|.++..                     +.....+.+++..|..||+
T Consensus         1 m~~liil~G~pGSGKSTla~~L~~~~~~~~~l~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~vIi   80 (300)
T PHA02530          1 MMKIILTVGVPGSGKSTWAREFAAKNPKAVNVNRDDLRQSLFGHGEWGEYKFTKEKEDLVTKAQEAAALAALKSGKSVII   80 (300)
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEEeccHHHHHhcCCCcccccccChHHHHHHHHHHHHHHHHHHHcCCeEEE
Confidence            57899999999999999999999998 8999999998421                     1123345666788999999


Q ss_pred             eCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHcC
Q psy4598         329 DNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK  369 (369)
Q Consensus       329 D~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn~  369 (369)
                      |+++.+++.|..+.++++++++.+.++++++|.+++.+|++
T Consensus        81 d~~~~~~~~~~~~~~la~~~~~~~~~v~l~~~~e~~~~R~~  121 (300)
T PHA02530         81 SDTNLNPERRRKWKELAKELGAEFEEKVFDVPVEELVKRNR  121 (300)
T ss_pred             eCCCCCHHHHHHHHHHHHHcCCeEEEEEeCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999974

>PRK13222 phosphoglycolate phosphatase; Provisional

Probab=99.57  E-value=5.2e-15  Score=135.35  Aligned_cols=98  Identities=16%  Similarity=0.260  Sum_probs=84.4

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++||+.+.|+.|+++|++++|+||..            ...+..+++.+|+  .|+.+++.+....+||+|.+++.++++
T Consensus        94 ~~~g~~~~l~~l~~~g~~~~i~S~~~------------~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~  161 (226)
T PRK13222         94 LYPGVKETLAALKAAGYPLAVVTNKP------------TPFVAPLLEALGIADYFSVVIGGDSLPNKKPDPAPLLLACEK  161 (226)
T ss_pred             cCCCHHHHHHHHHHCCCeEEEEeCCC------------HHHHHHHHHHcCCccCccEEEcCCCCCCCCcChHHHHHHHHH
Confidence            68999999999999999999999943            2345566777887  478888888777899999999999998


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCch
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPE  184 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~pe  184 (369)
                      +    ++++++++||||+.                .|+++|+++|+.++...
T Consensus       162 ~----~~~~~~~i~igD~~----------------~Di~~a~~~g~~~i~v~  193 (226)
T PRK13222        162 L----GLDPEEMLFVGDSR----------------NDIQAARAAGCPSVGVT  193 (226)
T ss_pred             c----CCChhheEEECCCH----------------HHHHHHHHCCCcEEEEC
Confidence            6    68899999999998                89999999999987543

>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase

Probab=99.57  E-value=4.3e-15  Score=134.97  Aligned_cols=98  Identities=14%  Similarity=0.236  Sum_probs=77.7

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|+++||+++|+||......     . ..    ..+..+++  .|+.++++.....+||+|.+|+.++++
T Consensus        95 ~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~-----~-~~----~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~~  164 (211)
T TIGR02247        95 LRPSMMAAIKTLRAKGFKTACITNNFPTDH-----S-AE----EALLPGDIMALFDAVVESCLEGLRKPDPRIYQLMLER  164 (211)
T ss_pred             cChhHHHHHHHHHHCCCeEEEEeCCCCccc-----h-hh----hHhhhhhhHhhCCEEEEeeecCCCCCCHHHHHHHHHH
Confidence            589999999999999999999999542110     0 00    11122233  377777777778899999999999998


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    ++++++|+||||+.                .|+.+|+++||+++.
T Consensus       165 ~----g~~~~~~l~i~D~~----------------~di~aA~~aG~~~i~  194 (211)
T TIGR02247       165 L----GVAPEECVFLDDLG----------------SNLKPAAALGITTIK  194 (211)
T ss_pred             c----CCCHHHeEEEcCCH----------------HHHHHHHHcCCEEEE
Confidence            6    78999999999998                899999999999864

These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.

>PLN02779 haloacid dehalogenase-like hydrolase family protein

Probab=99.55  E-value=3.3e-14  Score=135.65  Aligned_cols=96  Identities=17%  Similarity=0.266  Sum_probs=77.1

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcC---C--CeEEEEecCCCCCCCCchhHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLN---V--PVQMFVATQYDRYRKPVPGMWEYL  129 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~---i--~~~~~~~~~~~~~rKP~~gm~~~~  129 (369)
                      ++||+.+.|+.|+++|++++|+||.+        ..    .+..+++.++   +  .|+++ +.++...+||.|.+|..+
T Consensus       145 l~pGv~elL~~L~~~g~~l~IvTn~~--------~~----~~~~~l~~~~~~~~~~~~~~v-~~~~~~~~KP~p~~~~~a  211 (286)
T PLN02779        145 LRPGVLRLMDEALAAGIKVAVCSTSN--------EK----AVSKIVNTLLGPERAQGLDVF-AGDDVPKKKPDPDIYNLA  211 (286)
T ss_pred             chhhHHHHHHHHHHCCCeEEEEeCCC--------HH----HHHHHHHHhccccccCceEEE-eccccCCCCCCHHHHHHH
Confidence            68999999999999999999999943        12    2233333332   1  24444 666677899999999999


Q ss_pred             HHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         130 SQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       130 ~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      ++++    ++++++++||||+.                .|+++|+++||+++..
T Consensus       212 ~~~~----~~~p~~~l~IGDs~----------------~Di~aA~~aG~~~i~v  245 (286)
T PLN02779        212 AETL----GVDPSRCVVVEDSV----------------IGLQAAKAAGMRCIVT  245 (286)
T ss_pred             HHHh----CcChHHEEEEeCCH----------------HhHHHHHHcCCEEEEE
Confidence            9996    68999999999999                8999999999999755

>COG0645 Predicted kinase [General function prediction only]

Probab=99.54  E-value=6.3e-14  Score=121.10  Aligned_cols=95  Identities=22%  Similarity=0.307  Sum_probs=90.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch------------------------hHHHHHHHHHHHHhCCCcEEE
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG------------------------SWQKCVSVMKAALDSGLSVVV  328 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~------------------------~~~~~~~~~~~~l~~g~~vIi  328 (369)
                      ++++++|.|||||||+|+.|.+.+++.+|.+|.++                        .|..+...+..+++.|.+||+
T Consensus         2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~irk~L~g~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~~G~~VVl   81 (170)
T COG0645           2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDVIRKRLFGVPEETRGPAGLYSPAATAAVYDELLGRAELLLSSGHSVVL   81 (170)
T ss_pred             eEEEEecCCCccHhHHHHHHHhhcCceEEehHHHHHHhcCCcccccCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCcEEE
Confidence            68999999999999999999999999999999984                        378889999999999999999


Q ss_pred             eCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         329 DNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       329 D~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      |+++..+.+|..++.+|+..++++..++|++|.+++..|
T Consensus        82 Da~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~r  120 (170)
T COG0645          82 DATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGR  120 (170)
T ss_pred             ecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHH
Confidence            999999999999999999999999999999999998877

>cd01427 HAD_like Haloacid dehalogenase-like hydrolases

Probab=99.54  E-value=3.5e-14  Score=117.79  Aligned_cols=119  Identities=21%  Similarity=0.302  Sum_probs=93.7

Q ss_pred             EEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC-
Q psy4598          27 IASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV-  105 (369)
Q Consensus        27 ~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i-  105 (369)
                      +++||+||||+...+...   .... ..++|++.+.|++|+++|++++|+||..            ...+...++.+++ 
T Consensus         1 ~~vfD~D~tl~~~~~~~~---~~~~-~~~~~~~~~~l~~l~~~g~~i~ivS~~~------------~~~~~~~~~~~~~~   64 (139)
T cd01427           1 AVLFDLDGTLLDSEPGIA---EIEE-LELYPGVKEALKELKEKGIKLALATNKS------------RREVLELLEELGLD   64 (139)
T ss_pred             CeEEccCCceEccCcccc---cccc-CCcCcCHHHHHHHHHHCCCeEEEEeCch------------HHHHHHHHHHcCCc
Confidence            479999999998765321   1222 3379999999999999999999999942            3455667777887 


Q ss_pred             -CeEEEEecCCCCCC----------------CCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcc
Q psy4598         106 -PVQMFVATQYDRYR----------------KPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACT  168 (369)
Q Consensus       106 -~~~~~~~~~~~~~r----------------KP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~  168 (369)
                       +++.+++.......                ||++.++..+.+++    +..+++++||||+.                +
T Consensus        65 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~igD~~----------------~  124 (139)
T cd01427          65 DYFDPVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKLLAALKLL----GVDPEEVLMVGDSL----------------N  124 (139)
T ss_pred             hhhhheeccchhhhhcccccccccccccccCCCCHHHHHHHHHHc----CCChhhEEEeCCCH----------------H
Confidence             56656655544333                99999999999986    56789999999999                8


Q ss_pred             cHHHHHhCCCCcc
Q psy4598         169 DHLFAFNLNLAFF  181 (369)
Q Consensus       169 D~~~A~n~Gi~f~  181 (369)
                      |+.+|.++|+.++
T Consensus       125 d~~~~~~~g~~~i  137 (139)
T cd01427         125 DIEMAKAAGGLGV  137 (139)
T ss_pred             HHHHHHHcCCcee
Confidence            9999999999875

The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.

>TIGR01685 MDP-1 magnesium-dependent phosphatase-1

Probab=99.53  E-value=3.2e-14  Score=125.65  Aligned_cols=130  Identities=15%  Similarity=0.154  Sum_probs=94.5

Q ss_pred             ceEEEEecCCceeecCCCC----CCC-CCc---------cccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHH
Q psy4598          25 AKIASFDLDGTLITTKSGK----VFP-VDT---------HDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTR   90 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~----~~~-~~~---------~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~   90 (369)
                      .|++.||+|+||+....-.    .+. ...         ..-..++|||.+.|+.|+++|++++|+||...         
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~---------   72 (174)
T TIGR01685         2 PRVIVFDLDGTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLKDAGTYLATASWNDV---------   72 (174)
T ss_pred             CcEEEEeCCCCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCC---------
Confidence            4789999999998764211    111 000         01123799999999999999999999999421         


Q ss_pred             HHHHHHHHHHHHcCCC-----------eEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCC
Q psy4598          91 DFQAKAEKIIKSLNVP-----------VQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAP  159 (369)
Q Consensus        91 ~~~~~i~~~l~~l~i~-----------~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~  159 (369)
                        ...+..+++.+++.           |+.+++.+.....||.+.+++.+.+.++  .++++++++||||+.        
T Consensus        73 --~~~~~~~L~~~~l~~~~~~~~~~~~Fd~iv~~~~~~~~kp~~~i~~~~~~~~~--~gl~p~e~l~VgDs~--------  140 (174)
T TIGR01685        73 --PEWAYEILGTFEITYAGKTVPMHSLFDDRIEIYKPNKAKQLEMILQKVNKVDP--SVLKPAQILFFDDRT--------  140 (174)
T ss_pred             --hHHHHHHHHhCCcCCCCCcccHHHhceeeeeccCCchHHHHHHHHHHhhhccc--CCCCHHHeEEEcChh--------
Confidence              12344566666653           7888887776677888888877766521  148899999999999        


Q ss_pred             CCCCCCCcccHHHHHhCCCCccCc
Q psy4598         160 KKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       160 ~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                              .|+++|+++|+.++..
T Consensus       141 --------~di~aA~~aGi~~i~v  156 (174)
T TIGR01685       141 --------DNVREVWGYGVTSCYC  156 (174)
T ss_pred             --------HhHHHHHHhCCEEEEc
Confidence                    8999999999998643

This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.

>PRK10563 6-phosphogluconate phosphatase; Provisional

Probab=99.53  E-value=8.1e-15  Score=134.14  Aligned_cols=92  Identities=9%  Similarity=0.151  Sum_probs=77.5

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeE-EEEecCCCCCCCCchhHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQ-MFVATQYDRYRKPVPGMWEYLSQ  131 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~-~~~~~~~~~~rKP~~gm~~~~~~  131 (369)
                      ++||+.+.|+.|   +++++|+||.+            +..+...++.+|+  .|+ .+++..+....||+|.+|+.+++
T Consensus        89 ~~~gv~~~L~~L---~~~~~ivTn~~------------~~~~~~~l~~~~l~~~F~~~v~~~~~~~~~KP~p~~~~~a~~  153 (221)
T PRK10563         89 PIAGANALLESI---TVPMCVVSNGP------------VSKMQHSLGKTGMLHYFPDKLFSGYDIQRWKPDPALMFHAAE  153 (221)
T ss_pred             cCCCHHHHHHHc---CCCEEEEeCCc------------HHHHHHHHHhcChHHhCcceEeeHHhcCCCCCChHHHHHHHH
Confidence            578999999998   59999999942            2345566777887  364 67777677789999999999999


Q ss_pred             HhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         132 EKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       132 ~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      ++    ++++++|+||||+.                .|+++|+++|++++
T Consensus       154 ~~----~~~p~~~l~igDs~----------------~di~aA~~aG~~~i  183 (221)
T PRK10563        154 AM----NVNVENCILVDDSS----------------AGAQSGIAAGMEVF  183 (221)
T ss_pred             Hc----CCCHHHeEEEeCcH----------------hhHHHHHHCCCEEE
Confidence            96    68899999999999                89999999999986

>PRK10748 flavin mononucleotide phosphatase; Provisional

Probab=99.53  E-value=2e-14  Score=133.49  Aligned_cols=91  Identities=19%  Similarity=0.212  Sum_probs=76.2

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++||+.+.|+.|++. |+++|+||.+.         .        ++.+|+  +|+.+++++.....||+|.+|..++++
T Consensus       114 ~~~gv~~~L~~L~~~-~~l~i~Tn~~~---------~--------~~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~  175 (238)
T PRK10748        114 VPQATHDTLKQLAKK-WPLVAITNGNA---------Q--------PELFGLGDYFEFVLRAGPHGRSKPFSDMYHLAAEK  175 (238)
T ss_pred             CCccHHHHHHHHHcC-CCEEEEECCCc---------h--------HHHCCcHHhhceeEecccCCcCCCcHHHHHHHHHH
Confidence            468999999999875 99999999431         0        245666  488888888888899999999999998


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    ++++++++||||+..               .|+.+|+++|++++.
T Consensus       176 ~----~~~~~~~~~VGD~~~---------------~Di~~A~~aG~~~i~  206 (238)
T PRK10748        176 L----NVPIGEILHVGDDLT---------------TDVAGAIRCGMQACW  206 (238)
T ss_pred             c----CCChhHEEEEcCCcH---------------HHHHHHHHCCCeEEE
Confidence            5    789999999999941               799999999999853

>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]

Probab=99.52  E-value=8.3e-15  Score=134.67  Aligned_cols=96  Identities=15%  Similarity=0.227  Sum_probs=85.6

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      .+||+.+.|++|+++|..++++||.+            ...++.+++.+|+  +|+.+++.++....||+|.+|..++++
T Consensus        87 ~~pGv~~~l~~L~~~~i~~avaS~s~------------~~~~~~~L~~~gl~~~f~~~v~~~dv~~~KP~Pd~yL~Aa~~  154 (221)
T COG0637          87 PIPGVVELLEQLKARGIPLAVASSSP------------RRAAERVLARLGLLDYFDVIVTADDVARGKPAPDIYLLAAER  154 (221)
T ss_pred             CCccHHHHHHHHHhcCCcEEEecCCh------------HHHHHHHHHHccChhhcchhccHHHHhcCCCCCHHHHHHHHH
Confidence            57999999999999999999999932            3456778888888  488888888888899999999999999


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    +++|++|+.|.|+.                ..+++|+++||..+-
T Consensus       155 L----gv~P~~CvviEDs~----------------~Gi~Aa~aAGm~vv~  184 (221)
T COG0637         155 L----GVDPEECVVVEDSP----------------AGIQAAKAAGMRVVG  184 (221)
T ss_pred             c----CCChHHeEEEecch----------------hHHHHHHHCCCEEEE
Confidence            5    79999999999999                899999999999864

>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E

Probab=99.52  E-value=2.3e-14  Score=123.62  Aligned_cols=90  Identities=20%  Similarity=0.187  Sum_probs=71.0

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCchhHHHHHHHHhc
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKN  134 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~  134 (369)
                      .+||+.+.|+.|+++|++++|+||..        .......+...   +.-+|+.+++.++.. +||+|.++.++++++ 
T Consensus        65 ~~~g~~e~l~~L~~~g~~~~i~T~~~--------~~~~~~~~~~~---l~~~f~~i~~~~~~~-~Kp~~~~~~~~~~~~-  131 (154)
T TIGR01549        65 YIRGAADLLKRLKEAGIKLGIISNGS--------LRAQKLLLRKH---LGDYFDLILGSDEFG-AKPEPEIFLAALESL-  131 (154)
T ss_pred             eccCHHHHHHHHHHCcCeEEEEeCCc--------hHHHHHHHHHH---HHhcCcEEEecCCCC-CCcCHHHHHHHHHHc-
Confidence            46999999999999999999999943        12222222221   333567677776666 999999999999986 


Q ss_pred             CCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCC
Q psy4598         135 GDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLN  177 (369)
Q Consensus       135 ~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~G  177 (369)
                         ++++ +++||||+.                .|+++|+++|
T Consensus       132 ---~~~~-~~l~iGDs~----------------~Di~aa~~aG  154 (154)
T TIGR01549       132 ---GLPP-EVLHVGDNL----------------NDIEGARNAG  154 (154)
T ss_pred             ---CCCC-CEEEEeCCH----------------HHHHHHHHcc
Confidence               6888 999999998                8999999987

HAD subfamilies caused by an overly broad single model.

>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=99.52  E-value=2.4e-14  Score=131.07  Aligned_cols=95  Identities=22%  Similarity=0.331  Sum_probs=81.6

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      .+|++.+.|++|+.. |+++|+||..            .......+..+|+  +|+.+++++..+..||+|.+|++++++
T Consensus       100 ~~~~~~~~L~~l~~~-~~l~ilTNg~------------~~~~~~~l~~~gl~~~Fd~v~~s~~~g~~KP~~~~f~~~~~~  166 (229)
T COG1011         100 DYPEALEALKELGKK-YKLGILTNGA------------RPHQERKLRQLGLLDYFDAVFISEDVGVAKPDPEIFEYALEK  166 (229)
T ss_pred             cChhHHHHHHHHHhh-ccEEEEeCCC------------hHHHHHHHHHcCChhhhheEEEecccccCCCCcHHHHHHHHH
Confidence            478899999999988 9999999932            2234556778886  588888888888999999999999999


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      +    +++|++++||||+..               +|+.+|.++|++++
T Consensus       167 ~----g~~p~~~l~VgD~~~---------------~di~gA~~~G~~~v  196 (229)
T COG1011         167 L----GVPPEEALFVGDSLE---------------NDILGARALGMKTV  196 (229)
T ss_pred             c----CCCcceEEEECCChh---------------hhhHHHHhcCcEEE
Confidence            6    788999999999994               89999999999985

>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]

Probab=99.51  E-value=5.2e-14  Score=120.54  Aligned_cols=115  Identities=21%  Similarity=0.261  Sum_probs=98.3

Q ss_pred             CCCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHH
Q psy4598          22 CNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIK  101 (369)
Q Consensus        22 ~~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~  101 (369)
                      ....|.+++|+|.||+.-+..           ..-|++.+.+.+++++|.+++|+||.+            +.++.....
T Consensus        25 ~~Gikgvi~DlDNTLv~wd~~-----------~~tpe~~~W~~e~k~~gi~v~vvSNn~------------e~RV~~~~~   81 (175)
T COG2179          25 AHGIKGVILDLDNTLVPWDNP-----------DATPELRAWLAELKEAGIKVVVVSNNK------------ESRVARAAE   81 (175)
T ss_pred             HcCCcEEEEeccCceecccCC-----------CCCHHHHHHHHHHHhcCCEEEEEeCCC------------HHHHHhhhh
Confidence            356799999999999976542           257899999999999999999999943            457888889


Q ss_pred             HcCCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         102 SLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       102 ~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      .+|++|-       ...+||.+.-|..+++++    ++++++++||||..               .+|+.+|..+||.++
T Consensus        82 ~l~v~fi-------~~A~KP~~~~fr~Al~~m----~l~~~~vvmVGDqL---------------~TDVlggnr~G~~tI  135 (175)
T COG2179          82 KLGVPFI-------YRAKKPFGRAFRRALKEM----NLPPEEVVMVGDQL---------------FTDVLGGNRAGMRTI  135 (175)
T ss_pred             hcCCcee-------ecccCccHHHHHHHHHHc----CCChhHEEEEcchh---------------hhhhhcccccCcEEE
Confidence            9998754       235899999999999996    79999999999999               499999999999998


Q ss_pred             Cchh
Q psy4598         182 TPEQ  185 (369)
Q Consensus       182 ~pe~  185 (369)
                      .++-
T Consensus       136 lV~P  139 (175)
T COG2179         136 LVEP  139 (175)
T ss_pred             EEEE
Confidence            7653

>PRK13225 phosphoglycolate phosphatase; Provisional

Probab=99.50  E-value=3.6e-14  Score=134.47  Aligned_cols=94  Identities=16%  Similarity=0.165  Sum_probs=76.9

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++||+.+.|+.|+++|++++|+||.+            ...+..+++.+|+  +|+.+++.+..   +|.+.++..++++
T Consensus       143 l~pg~~e~L~~L~~~gi~laIvSn~~------------~~~~~~~L~~~gl~~~F~~vi~~~~~---~~k~~~~~~~l~~  207 (273)
T PRK13225        143 LFPGVADLLAQLRSRSLCLGILSSNS------------RQNIEAFLQRQGLRSLFSVVQAGTPI---LSKRRALSQLVAR  207 (273)
T ss_pred             cCCCHHHHHHHHHHCCCeEEEEeCCC------------HHHHHHHHHHcCChhheEEEEecCCC---CCCHHHHHHHHHH
Confidence            58999999999999999999999943            3456677888888  47766665433   2345789999988


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      +    ++++++++||||+.                .|+++|+++|+.++..
T Consensus       208 ~----~~~p~~~l~IGDs~----------------~Di~aA~~AG~~~I~v  238 (273)
T PRK13225        208 E----GWQPAAVMYVGDET----------------RDVEAARQVGLIAVAV  238 (273)
T ss_pred             h----CcChhHEEEECCCH----------------HHHHHHHHCCCeEEEE
Confidence            6    68899999999998                8999999999998654

>KOG3085|consensus

Probab=99.50  E-value=4e-14  Score=129.71  Aligned_cols=101  Identities=19%  Similarity=0.285  Sum_probs=85.8

Q ss_pred             ccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHH
Q psy4598          51 DWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEY  128 (369)
Q Consensus        51 d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~  128 (369)
                      .|+ ..+++.++|++|+++|+.|.++||             +..+.+.++..+|+  .|+.++.+...+.+||+|.+|++
T Consensus       111 ~~~-~~~~~~~~lq~lR~~g~~l~iisN-------------~d~r~~~~l~~~~l~~~fD~vv~S~e~g~~KPDp~If~~  176 (237)
T KOG3085|consen  111 AWK-YLDGMQELLQKLRKKGTILGIISN-------------FDDRLRLLLLPLGLSAYFDFVVESCEVGLEKPDPRIFQL  176 (237)
T ss_pred             Cce-eccHHHHHHHHHHhCCeEEEEecC-------------CcHHHHHHhhccCHHHhhhhhhhhhhhccCCCChHHHHH
Confidence            444 245667999999999999999999             34455667777777  58888888888999999999999


Q ss_pred             HHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCch
Q psy4598         129 LSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPE  184 (369)
Q Consensus       129 ~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~pe  184 (369)
                      ++++.    ++.|++|++|||...               +|+++|+|+|+..+...
T Consensus       177 al~~l----~v~Pee~vhIgD~l~---------------nD~~gA~~~G~~ailv~  213 (237)
T KOG3085|consen  177 ALERL----GVKPEECVHIGDLLE---------------NDYEGARNLGWHAILVD  213 (237)
T ss_pred             HHHHh----CCChHHeEEecCccc---------------cccHhHHHcCCEEEEEc
Confidence            99995    788999999999984               89999999999997664

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=99.48  E-value=1.9e-13  Score=130.93  Aligned_cols=131  Identities=13%  Similarity=0.141  Sum_probs=97.7

Q ss_pred             CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHc
Q psy4598          24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSL  103 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l  103 (369)
                      ..++++||+||||........|.-.......++|++.+.|++|+++|++++|+||.+         ....+.+...+...
T Consensus       157 ~~~~~~~D~dgtl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~---------~~~~~~~l~~l~~~  227 (300)
T PHA02530        157 LPKAVIFDIDGTLAKMGGRSPYDWTKVKEDKPNPMVVELVKMYKAAGYEIIVVSGRD---------GVCEEDTVEWLRQT  227 (300)
T ss_pred             CCCEEEEECCCcCcCCCCCCccchhhcccCCCChhHHHHHHHHHhCCCEEEEEeCCC---------hhhHHHHHHHHHHc
Confidence            457999999999997654322211111112369999999999999999999999954         23334444445556


Q ss_pred             CCCeEEEEecC-------CCCCCCCchhHHHHHHHHhcCCccc-cCCccEEeeCccccccccCCCCCCCCCcccHHHHHh
Q psy4598         104 NVPVQMFVATQ-------YDRYRKPVPGMWEYLSQEKNGDLAI-DISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFN  175 (369)
Q Consensus       104 ~i~~~~~~~~~-------~~~~rKP~~gm~~~~~~~~~~~~~i-~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n  175 (369)
                      +++|+.+++..       ....+||.|.++.++++++    .. ++++++||||+.                .|+.+|++
T Consensus       228 ~~~f~~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~----~~~~~~~~~~vgD~~----------------~d~~~a~~  287 (300)
T PHA02530        228 DIWFDDLIGRPPDMHFQREQGDKRPDDVVKEEIFWEK----IAPKYDVLLAVDDRD----------------QVVDMWRR  287 (300)
T ss_pred             CCchhhhhCCcchhhhcccCCCCCCcHHHHHHHHHHH----hccCceEEEEEcCcH----------------HHHHHHHH
Confidence            66677666665       3446899999999999985    45 579999999999                89999999


Q ss_pred             CCCCccCc
Q psy4598         176 LNLAFFTP  183 (369)
Q Consensus       176 ~Gi~f~~p  183 (369)
                      +||+++..
T Consensus       288 ~Gi~~i~v  295 (300)
T PHA02530        288 IGLECWQV  295 (300)
T ss_pred             hCCeEEEe
Confidence            99998754

>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated

Probab=99.48  E-value=8.4e-14  Score=141.34  Aligned_cols=95  Identities=14%  Similarity=0.118  Sum_probs=78.8

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++||+.+.|+.|+++|++++|+||.+            ...+..+++.+|+  +|+.+++.++. ..||+|.++..++++
T Consensus       331 l~pG~~e~L~~Lk~~g~~l~IvS~~~------------~~~~~~~l~~~~l~~~f~~i~~~d~v-~~~~kP~~~~~al~~  397 (459)
T PRK06698        331 LYPNVKEIFTYIKENNCSIYIASNGL------------TEYLRAIVSYYDLDQWVTETFSIEQI-NSLNKSDLVKSILNK  397 (459)
T ss_pred             cCCCHHHHHHHHHHCCCeEEEEeCCc------------hHHHHHHHHHCCcHhhcceeEecCCC-CCCCCcHHHHHHHHh
Confidence            58999999999999999999999942            3456667888887  47888887665 347888899999876


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCch
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPE  184 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~pe  184 (369)
                            +++++|+||||+.                .|+++|+++|+.++...
T Consensus       398 ------l~~~~~v~VGDs~----------------~Di~aAk~AG~~~I~v~  427 (459)
T PRK06698        398 ------YDIKEAAVVGDRL----------------SDINAAKDNGLIAIGCN  427 (459)
T ss_pred             ------cCcceEEEEeCCH----------------HHHHHHHHCCCeEEEEe
Confidence                  3578999999998                89999999999986543

>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=99.47  E-value=4.4e-13  Score=115.91  Aligned_cols=96  Identities=24%  Similarity=0.315  Sum_probs=77.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchh----------------HHHHHHHHHHHHhCCCcEEEeC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGS----------------WQKCVSVMKAALDSGLSVVVDN  330 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~----------------~~~~~~~~~~~l~~g~~vIiD~  330 (369)
                      +.+|+|+|+|||||||+|++|.+.+     ++.+|+.|.++.                .+++...+....++|..||++.
T Consensus         2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ll~~~G~ivIva~   81 (156)
T PF01583_consen    2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAKLLADQGIIVIVAF   81 (156)
T ss_dssp             -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHHHHHHTTSEEEEE-
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCeEEEee
Confidence            5789999999999999999999875     688999999852                3556677788889999999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHcC
Q psy4598         331 TNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK  369 (369)
Q Consensus       331 tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn~  369 (369)
                      ..+.++.|+..+++....  .+..||++||.++|++|+.
T Consensus        82 isp~~~~R~~~R~~~~~~--~f~eVyv~~~~e~~~~RD~  118 (156)
T PF01583_consen   82 ISPYREDREWARELIPNE--RFIEVYVDCPLEVCRKRDP  118 (156)
T ss_dssp             ---SHHHHHHHHHHHHTT--EEEEEEEES-HHHHHHHTT
T ss_pred             ccCchHHHHHHHHhCCcC--ceEEEEeCCCHHHHHHhCc
Confidence            999999999999887754  7899999999999999973

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....

>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate

Probab=99.46  E-value=4.5e-13  Score=115.25  Aligned_cols=93  Identities=23%  Similarity=0.273  Sum_probs=76.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchhH-----------------H----HHHHHHHHHH-hCCCcEEEeCC
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSW-----------------Q----KCVSVMKAAL-DSGLSVVVDNT  331 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~~-----------------~----~~~~~~~~~l-~~g~~vIiD~t  331 (369)
                      +|+|+|+|||||||+|+.|++.+++.+++.|.++..                 .    .+...+...+ ..+.+||+|++
T Consensus         1 li~l~G~~GsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~vVid~~   80 (150)
T cd02021           1 IIVVMGVSGSGKSTVGKALAERLGAPFIDGDDLHPPANIAKMAAGIPLNDEDRWPWLQALTDALLAKLASAGEGVVVACS   80 (150)
T ss_pred             CEEEEcCCCCCHHHHHHHHHhhcCCEEEeCcccccHHHHHHHHcCCCCCccchhhHHHHHHHHHHHHHHhCCCCEEEEec
Confidence            589999999999999999999999999999998531                 1    1112222223 47889999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         332 NPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       332 n~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      +.....|..+.+++  ++.++.+|++++|.+++.+|+
T Consensus        81 ~~~~~~r~~~~~~~--~~~~~~~v~l~~~~~~~~~R~  115 (150)
T cd02021          81 ALKRIYRDILRGGA--ANPRVRFVHLDGPREVLAERL  115 (150)
T ss_pred             cccHHHHHHHHhcC--CCCCEEEEEEECCHHHHHHHH
Confidence            99999999998888  788999999999999999986

The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=99.46  E-value=3.7e-13  Score=116.19  Aligned_cols=94  Identities=22%  Similarity=0.299  Sum_probs=77.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchh----------------HHHHHHHHHHHHhCCCcEEEeCCC
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGS----------------WQKCVSVMKAALDSGLSVVVDNTN  332 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~----------------~~~~~~~~~~~l~~g~~vIiD~tn  332 (369)
                      +|+|+|+|||||||+++.|++.+     ++.+++.|.++.                ++.+...++..++.|.+||+|+++
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~~VIid~~~   80 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDLGFSREDREENIRRIAEVAKLLADAGLIVIAAFIS   80 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhccCCCcchHHHHHHHHHHHHHHHHhCCCEEEEccCC
Confidence            47899999999999999999876     367788887642                222334455667789999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHcC
Q psy4598         333 PDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK  369 (369)
Q Consensus       333 ~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn~  369 (369)
                      ..+..|..+.++++  +.++.++++++|.++|.+|+.
T Consensus        81 ~~~~~R~~~~~l~~--~~~~~~i~l~~~~e~~~~R~~  115 (149)
T cd02027          81 PYREDREAARKIIG--GGDFLEVFVDTPLEVCEQRDP  115 (149)
T ss_pred             CCHHHHHHHHHhcC--CCCEEEEEEeCCHHHHHHhCc
Confidence            99999999988876  789999999999999999974

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=99.46  E-value=2.7e-13  Score=126.77  Aligned_cols=96  Identities=26%  Similarity=0.400  Sum_probs=81.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchh----HH---------HHHHHHHHHHhCCCcEEEeCCCCCH
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGS----WQ---------KCVSVMKAALDSGLSVVVDNTNPDK  335 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~----~~---------~~~~~~~~~l~~g~~vIiD~tn~~~  335 (369)
                      +|+|+|+|||||||+|++|++.+     ++.+++.|.++.    |.         .....+..+++.|..||+|++|...
T Consensus         1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~~~~~~e~~~~~~~~~~i~~~l~~~~~VI~D~~~~~~   80 (249)
T TIGR03574         1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPVWKEKYEEFIRDSTLYLIKTALKNKYSVIVDDTNYYN   80 (249)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHHhhHHhHHHHHHHHHHHHHHHHhCCCeEEEeccchHH
Confidence            58999999999999999999864     467888887742    11         1234466677888899999999999


Q ss_pred             HHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHcC
Q psy4598         336 ESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK  369 (369)
Q Consensus       336 ~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn~  369 (369)
                      ..|..+..+|+.+++++.+||+++|.++|.+||+
T Consensus        81 ~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~  114 (249)
T TIGR03574        81 SMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNI  114 (249)
T ss_pred             HHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHH
Confidence            9999999999999999999999999999999973

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=99.46  E-value=3.2e-13  Score=127.44  Aligned_cols=98  Identities=21%  Similarity=0.227  Sum_probs=72.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch--------------hHHHHHHHHHHHHhCCCcEEEeCCC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG--------------SWQKCVSVMKAALDSGLSVVVDNTN  332 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~--------------~~~~~~~~~~~~l~~g~~vIiD~tn  332 (369)
                      +.||+|+|.|||||||+|++|.+.+     .+.+++.|.+.              ....+...+..+++....||+|+.|
T Consensus         1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~ls~~~iVI~Dd~n   80 (270)
T PF08433_consen    1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERALSKDTIVILDDNN   80 (270)
T ss_dssp             E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHHTT-SEEEE-S--
T ss_pred             CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhhccCeEEEEeCCc
Confidence            3689999999999999999999863     45667755542              1234566677788888999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHcC
Q psy4598         333 PDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK  369 (369)
Q Consensus       333 ~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn~  369 (369)
                      ..+..|.++..+|++++..+.+||+++|.|.|++||.
T Consensus        81 YiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~  117 (270)
T PF08433_consen   81 YIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNS  117 (270)
T ss_dssp             -SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhh
Confidence            9999999999999999999999999999999999983

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.46  E-value=1.7e-13  Score=151.08  Aligned_cols=97  Identities=14%  Similarity=0.192  Sum_probs=85.2

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC---eEEEEecCCCCCCCCchhHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP---VQMFVATQYDRYRKPVPGMWEYLSQ  131 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~---~~~~~~~~~~~~rKP~~gm~~~~~~  131 (369)
                      ++||+.+.|++|+++||+++|+||..            ...++.+++.+|+.   |+.+++.++....||+|.+|.++++
T Consensus       162 ~~pG~~elL~~Lk~~G~~l~IvSn~~------------~~~~~~~L~~~gl~~~~Fd~iv~~~~~~~~KP~Pe~~~~a~~  229 (1057)
T PLN02919        162 GFPGALELITQCKNKGLKVAVASSAD------------RIKVDANLAAAGLPLSMFDAIVSADAFENLKPAPDIFLAAAK  229 (1057)
T ss_pred             cCccHHHHHHHHHhCCCeEEEEeCCc------------HHHHHHHHHHcCCChhHCCEEEECcccccCCCCHHHHHHHHH
Confidence            48999999999999999999999943            23456667888874   7888898888889999999999999


Q ss_pred             HhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         132 EKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       132 ~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      ++    ++++++|+||||+.                .|+++|+++||+++..
T Consensus       230 ~l----gv~p~e~v~IgDs~----------------~Di~AA~~aGm~~I~v  261 (1057)
T PLN02919        230 IL----GVPTSECVVIEDAL----------------AGVQAARAAGMRCIAV  261 (1057)
T ss_pred             Hc----CcCcccEEEEcCCH----------------HHHHHHHHcCCEEEEE
Confidence            86    78999999999999                8999999999998644

>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family

Probab=99.45  E-value=2.8e-13  Score=117.61  Aligned_cols=112  Identities=16%  Similarity=0.248  Sum_probs=84.1

Q ss_pred             ceEEEEecCCceeecCCCCCCCCC---ccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHH
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVD---THDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIK  101 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~---~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~  101 (369)
                      .|+++||+||||+...-  .|...   ...|. +.++.  +|++|+++|++++|+||.+            ...+..+++
T Consensus         1 ~~~~~~D~Dgtl~~~~~--~~~~~~~~~~~~~-~~~~~--~i~~Lk~~G~~i~IvTn~~------------~~~~~~~l~   63 (154)
T TIGR01670         1 IRLLILDVDGVLTDGKI--YYTNNGEEIKAFN-VRDGY--GIRCALKSGIEVAIITGRK------------AKLVEDRCK   63 (154)
T ss_pred             CeEEEEeCceeEEcCeE--EECCCCcEEEEEe-chhHH--HHHHHHHCCCEEEEEECCC------------CHHHHHHHH
Confidence            37899999999996421  12222   22232 23343  8999999999999999954            123456788


Q ss_pred             HcCCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc
Q psy4598         102 SLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF  180 (369)
Q Consensus       102 ~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f  180 (369)
                      .+|+. ..+ .     ..||+|.++..+++++    ++++++++||||+.                .|+.++.++|+.+
T Consensus        64 ~~gi~-~~~-~-----~~~~k~~~~~~~~~~~----~~~~~~~~~vGDs~----------------~D~~~~~~ag~~~  115 (154)
T TIGR01670        64 TLGIT-HLY-Q-----GQSNKLIAFSDILEKL----ALAPENVAYIGDDL----------------IDWPVMEKVGLSV  115 (154)
T ss_pred             HcCCC-EEE-e-----cccchHHHHHHHHHHc----CCCHHHEEEECCCH----------------HHHHHHHHCCCeE
Confidence            88875 122 2     2488999999999986    68999999999999                8999999999986

The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.

>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=99.44  E-value=4e-13  Score=119.14  Aligned_cols=97  Identities=23%  Similarity=0.348  Sum_probs=77.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch-------------hHHHH-----HHHHHHHHhCCCcEEE
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG-------------SWQKC-----VSVMKAALDSGLSVVV  328 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~-------------~~~~~-----~~~~~~~l~~g~~vIi  328 (369)
                      +++|+++|+|||||||+|+.|++.+     ...++..|...             .|+..     .+.+..+++ +..||+
T Consensus         1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kdy~~~i~~DEslpi~ke~yres~~ks~~rlldSalk-n~~VIv   79 (261)
T COG4088           1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKDYLRGILWDESLPILKEVYRESFLKSVERLLDSALK-NYLVIV   79 (261)
T ss_pred             CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchhhhhheecccccchHHHHHHHHHHHHHHHHHHHHhc-ceEEEE
Confidence            3689999999999999999999875     34566665542             12221     222333333 668999


Q ss_pred             eCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHcC
Q psy4598         329 DNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK  369 (369)
Q Consensus       329 D~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn~  369 (369)
                      |++|.....|.++...|++...+..+|++.||.++|.+||+
T Consensus        80 DdtNYyksmRrqL~ceak~~~tt~ciIyl~~plDtc~rrN~  120 (261)
T COG4088          80 DDTNYYKSMRRQLACEAKERKTTWCIIYLRTPLDTCLRRNR  120 (261)
T ss_pred             ecccHHHHHHHHHHHHHHhcCCceEEEEEccCHHHHHHhhc
Confidence            99999999999999999999999999999999999999985

>smart00577 CPDc catalytic domain of ctd-like phosphatases

Probab=99.44  E-value=3.5e-13  Score=116.21  Aligned_cols=121  Identities=17%  Similarity=0.119  Sum_probs=92.3

Q ss_pred             CceEEEEecCCceeecC--CCCCCCCC--ccc----------cccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCH
Q psy4598          24 SAKIASFDLDGTLITTK--SGKVFPVD--THD----------WKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMST   89 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~--sg~~~~~~--~~d----------~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~   89 (369)
                      +++.+.+||||||+.+.  +-......  +.+          ...++||+.+.|+.|+ ++|+++|+||.+         
T Consensus         1 ~k~~lvldld~tl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~-~~~~l~I~Ts~~---------   70 (148)
T smart00577        1 KKKTLVLDLDETLVHSTHRSFKEWTNRDFIVPVLIDGHPHGVYVKKRPGVDEFLKRAS-ELFELVVFTAGL---------   70 (148)
T ss_pred             CCcEEEEeCCCCeECCCCCcCCCCCccceEEEEEeCCceEEEEEEECCCHHHHHHHHH-hccEEEEEeCCc---------
Confidence            35789999999999873  21111111  111          1246999999999998 679999999943         


Q ss_pred             HHHHHHHHHHHHHcCC--C-eEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCC
Q psy4598          90 RDFQAKAEKIIKSLNV--P-VQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFA  166 (369)
Q Consensus        90 ~~~~~~i~~~l~~l~i--~-~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s  166 (369)
                         +..++.+++.+++  . |+.+++.+++...||.   |.++++.+    ++++++|+||||+.               
T Consensus        71 ---~~~~~~il~~l~~~~~~f~~i~~~~d~~~~KP~---~~k~l~~l----~~~p~~~i~i~Ds~---------------  125 (148)
T smart00577       71 ---RMYADPVLDLLDPKKYFGYRRLFRDECVFVKGK---YVKDLSLL----GRDLSNVIIIDDSP---------------  125 (148)
T ss_pred             ---HHHHHHHHHHhCcCCCEeeeEEECccccccCCe---EeecHHHc----CCChhcEEEEECCH---------------
Confidence               3345666777776  2 4788888888889997   77788875    78999999999999               


Q ss_pred             cccHHHHHhCCCCc
Q psy4598         167 CTDHLFAFNLNLAF  180 (369)
Q Consensus       167 ~~D~~~A~n~Gi~f  180 (369)
                       .|+++|.++||..
T Consensus       126 -~~~~aa~~ngI~i  138 (148)
T smart00577      126 -DSWPFHPENLIPI  138 (148)
T ss_pred             -HHhhcCccCEEEe
Confidence             8999999999874

>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672

Probab=99.43  E-value=6.5e-13  Score=122.92  Aligned_cols=127  Identities=17%  Similarity=0.195  Sum_probs=89.4

Q ss_pred             CCCce-EEEEecCCceeecCCC----CC-CCC-------Cccccc----------cccccHHHHHHHHHHCCcEEEEEec
Q psy4598          22 CNSAK-IASFDLDGTLITTKSG----KV-FPV-------DTHDWK----------LLFSNIESVLKQYLDDGYKLVIFTN   78 (369)
Q Consensus        22 ~~~~k-~~~fDlDgTLi~~~sg----~~-~~~-------~~~d~~----------~~~p~v~~~L~~L~~~G~~i~i~TN   78 (369)
                      ..+.+ .++||+||||+++..+    .. +..       +..-|.          ..++++.+.|++|+++|++++|+||
T Consensus        59 ~~~~p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~w~~~~~~~~~~s~p~~~a~elL~~l~~~G~~i~iVTn  138 (237)
T TIGR01672        59 EGRPPIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIFFVTG  138 (237)
T ss_pred             CCCCCeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHHHHHHHHhcccCCcchhHHHHHHHHHHHCCCEEEEEeC
Confidence            34445 8999999999988753    11 111       111122          2356699999999999999999999


Q ss_pred             CCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccc
Q psy4598          79 QGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAAN  156 (369)
Q Consensus        79 q~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~  156 (369)
                      ...        ......++.+++.+|++  |.++++.+.....||.+..   +++++    ++    ++||||+.     
T Consensus       139 r~~--------~k~~~~a~~ll~~lGi~~~f~~i~~~d~~~~~Kp~~~~---~l~~~----~i----~i~vGDs~-----  194 (237)
T TIGR01672       139 RTP--------GKTDTVSKTLAKNFHIPAMNPVIFAGDKPGQYQYTKTQ---WIQDK----NI----RIHYGDSD-----  194 (237)
T ss_pred             CCC--------CcCHHHHHHHHHHhCCchheeEEECCCCCCCCCCCHHH---HHHhC----CC----eEEEeCCH-----
Confidence            521        01123456677888985  6777877766667887653   34443    33    79999999     


Q ss_pred             cCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         157 WAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       157 ~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                                 .|+.+|+++|++++..
T Consensus       195 -----------~DI~aAk~AGi~~I~V  210 (237)
T TIGR01672       195 -----------NDITAAKEAGARGIRI  210 (237)
T ss_pred             -----------HHHHHHHHCCCCEEEE
Confidence                       8999999999998755

Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.

>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC

Probab=99.43  E-value=5.3e-13  Score=112.26  Aligned_cols=107  Identities=17%  Similarity=0.188  Sum_probs=73.8

Q ss_pred             eEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcC-
Q psy4598          26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLN-  104 (369)
Q Consensus        26 k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~-  104 (369)
                      |+++|||||||+.............+-..++||+.+.|+.|+++|++++|+||.+        ..   ..+..+++.++ 
T Consensus         1 kli~~DlD~Tl~~~~~~~~~~~~~~~~~~~~~gv~e~L~~Lk~~g~~l~i~Sn~~--------~~---~~~~~~l~~~~~   69 (128)
T TIGR01681         1 KVIVFDLDNTLWTGENIVVGEDPIIDLEVTIKEIRDKLQTLKKNGFLLALASYND--------DP---HVAYELLKIFED   69 (128)
T ss_pred             CEEEEeCCCCCCCCCcccccCCcchhhHHHHHHHHHHHHHHHHCCeEEEEEeCCC--------CH---HHHHHHHHhccc
Confidence            6789999999996631001111100111479999999999999999999999952        11   22333444444 


Q ss_pred             ------C--CeEEEEecCCCCCCCCchhHHHHHHHHhcCCcc--ccCCccEEeeCcc
Q psy4598         105 ------V--PVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLA--IDISQSFYAGDAA  151 (369)
Q Consensus       105 ------i--~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~--i~~~~s~~VGD~~  151 (369)
                            +  .|+.+++.+    .+|+|.+|..+++++    +  +.+++|+||||+.
T Consensus        70 ~~~i~~l~~~f~~~~~~~----~~pkp~~~~~a~~~l----g~~~~p~~~l~igDs~  118 (128)
T TIGR01681        70 FGIIFPLAEYFDPLTIGY----WLPKSPRLVEIALKL----NGVLKPKSILFVDDRP  118 (128)
T ss_pred             cccchhhHhhhhhhhhcC----CCcHHHHHHHHHHHh----cCCCCcceEEEECCCH
Confidence                  2  144444442    469999999999996    6  9999999999998

No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.

>TIGR00338 serB phosphoserine phosphatase SerB

Probab=99.42  E-value=3.3e-13  Score=123.24  Aligned_cols=94  Identities=17%  Similarity=0.155  Sum_probs=73.9

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEE-E-------Ee--cCCCCCCCCc
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQM-F-------VA--TQYDRYRKPV  122 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~-~-------~~--~~~~~~rKP~  122 (369)
                      ++||+.+.|+.|+++|++++|+||..            ...+..+++.+|+.  |.. +       .+  .......+|+
T Consensus        86 ~~~g~~~~l~~l~~~g~~~~IvS~~~------------~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~k  153 (219)
T TIGR00338        86 LTEGAEELVKTLKEKGYKVAVISGGF------------DLFAEHVKDKLGLDAAFANRLEVEDGKLTGLVEGPIVDASYK  153 (219)
T ss_pred             cCCCHHHHHHHHHHCCCEEEEECCCc------------HHHHHHHHHHcCCCceEeeEEEEECCEEEEEecCcccCCccc
Confidence            57999999999999999999999932            34556677778874  321 1       01  1122346788


Q ss_pred             hhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc
Q psy4598         123 PGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF  180 (369)
Q Consensus       123 ~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f  180 (369)
                      |.+++.+++++    ++++++|+||||+.                +|+.+|.++|+.+
T Consensus       154 ~~~~~~~~~~~----~~~~~~~i~iGDs~----------------~Di~aa~~ag~~i  191 (219)
T TIGR00338       154 GKTLLILLRKE----GISPENTVAVGDGA----------------NDLSMIKAAGLGI  191 (219)
T ss_pred             HHHHHHHHHHc----CCCHHHEEEEECCH----------------HHHHHHHhCCCeE
Confidence            99999999986    68999999999998                8999999999986

Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=99.40  E-value=2e-12  Score=114.47  Aligned_cols=93  Identities=17%  Similarity=0.188  Sum_probs=73.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCC--cEEEeCCcch------------------------------hHHHHHHHHHHHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLN--YTTVNRDTLG------------------------------SWQKCVSVMKAAL  320 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~--~~~i~~D~~~------------------------------~~~~~~~~~~~~l  320 (369)
                      .+|+|+|+|||||||+|++|++..+  +.+++.|.+.                              .|......+..++
T Consensus         3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l   82 (175)
T cd00227           3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAEGGIEFDGDGGVSPGPEFRLLEGAWYEAVAAMA   82 (175)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcccccccccCccCCcccchHHHHHHHHHHHHHHHHH
Confidence            5899999999999999999998863  4566777551                              2344556677888


Q ss_pred             hCCCcEEEeCCCC-CHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         321 DSGLSVVVDNTNP-DKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       321 ~~g~~vIiD~tn~-~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      ++|.+||+|+++. ..+.|..+..+   .+.++.+|++.||.+++.+|+
T Consensus        83 ~~G~~VIvD~~~~~~~~~r~~~~~~---~~~~~~~v~l~~~~~~l~~R~  128 (175)
T cd00227          83 RAGANVIADDVFLGRAALQDCWRSF---VGLDVLWVGVRCPGEVAEGRE  128 (175)
T ss_pred             hCCCcEEEeeeccCCHHHHHHHHHh---cCCCEEEEEEECCHHHHHHHH
Confidence            9999999999987 56666555543   357899999999999999986

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]

Probab=99.40  E-value=1.9e-12  Score=112.37  Aligned_cols=101  Identities=24%  Similarity=0.307  Sum_probs=85.3

Q ss_pred             hccccccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchh----------------HHHHHHHHHHHHhCCC
Q psy4598         266 VMKAALDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGS----------------WQKCVSVMKAALDSGL  324 (369)
Q Consensus       266 ~~~~~~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~----------------~~~~~~~~~~~l~~g~  324 (369)
                      .+....+.+|+|+|+|||||||+|.+|.+.+     ...+|+.|.+|.                .++....|+...++|.
T Consensus        17 ~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll~daG~   96 (197)
T COG0529          17 ALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLLADAGL   96 (197)
T ss_pred             HHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHHHHCCe
Confidence            3445556899999999999999999999874     578999999862                4566777888889999


Q ss_pred             cEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         325 SVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       325 ~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      .||+....+.++.|+..+++..+-  ++..||++||+++|++|+
T Consensus        97 iviva~ISP~r~~R~~aR~~~~~~--~FiEVyV~~pl~vce~RD  138 (197)
T COG0529          97 IVIVAFISPYREDRQMARELLGEG--EFIEVYVDTPLEVCERRD  138 (197)
T ss_pred             EEEEEeeCccHHHHHHHHHHhCcC--ceEEEEeCCCHHHHHhcC
Confidence            999999999999999888876533  789999999999999996

>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A

Probab=99.40  E-value=8.6e-13  Score=114.51  Aligned_cols=95  Identities=18%  Similarity=0.338  Sum_probs=84.1

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|++|+++|++++|+||.+            ...+...++.+|+.  |+.++++++...+||+|.+|..++++
T Consensus        78 ~~~~~~~~L~~l~~~~~~~~i~Sn~~------------~~~~~~~l~~~~~~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~  145 (176)
T PF13419_consen   78 PYPGVRELLERLKAKGIPLVIVSNGS------------RERIERVLERLGLDDYFDEIISSDDVGSRKPDPDAYRRALEK  145 (176)
T ss_dssp             ESTTHHHHHHHHHHTTSEEEEEESSE------------HHHHHHHHHHTTHGGGCSEEEEGGGSSSSTTSHHHHHHHHHH
T ss_pred             hhhhhhhhhhhcccccceeEEeecCC------------cccccccccccccccccccccccchhhhhhhHHHHHHHHHHH
Confidence            68999999999999999999999932            34456777888885  88888888888899999999999999


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      +    ++++++++||||+.                .|+++|+++||+++
T Consensus       146 ~----~~~p~~~~~vgD~~----------------~d~~~A~~~G~~~i  174 (176)
T PF13419_consen  146 L----GIPPEEILFVGDSP----------------SDVEAAKEAGIKTI  174 (176)
T ss_dssp             H----TSSGGGEEEEESSH----------------HHHHHHHHTTSEEE
T ss_pred             c----CCCcceEEEEeCCH----------------HHHHHHHHcCCeEE
Confidence            6    78999999999999                89999999999875

...

>PRK09456 ?-D-glucose-1-phosphatase; Provisional

Probab=99.39  E-value=5.7e-13  Score=120.20  Aligned_cols=96  Identities=15%  Similarity=0.201  Sum_probs=78.3

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHH-cCC--CeEEEEecCCCCCCCCchhHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKS-LNV--PVQMFVATQYDRYRKPVPGMWEYLSQ  131 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~-l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~  131 (369)
                      ++||+.+.|++|+++||+++|+||.+.        ..+    ...+.. .++  .|+.++++.....+||+|.+|+++++
T Consensus        85 ~~~g~~e~L~~l~~~g~~~~i~Sn~~~--------~~~----~~~~~~~~~l~~~fd~v~~s~~~~~~KP~p~~~~~~~~  152 (199)
T PRK09456         85 LRPEVIAIMHKLREQGHRVVVLSNTNR--------LHT----TFWPEEYPEVRAAADHIYLSQDLGMRKPEARIYQHVLQ  152 (199)
T ss_pred             cCHHHHHHHHHHHhCCCcEEEEcCCch--------hhH----HHHHhhchhHHHhcCEEEEecccCCCCCCHHHHHHHHH
Confidence            579999999999999999999999541        111    111111 122  47878888888899999999999999


Q ss_pred             HhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         132 EKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       132 ~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      ++    +++|++++||||+.                .|+++|+++|++++.
T Consensus       153 ~~----~~~p~~~l~vgD~~----------------~di~aA~~aG~~~i~  183 (199)
T PRK09456        153 AE----GFSAADAVFFDDNA----------------DNIEAANALGITSIL  183 (199)
T ss_pred             Hc----CCChhHeEEeCCCH----------------HHHHHHHHcCCEEEE
Confidence            96    79999999999998                899999999999864

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=99.39  E-value=2.6e-12  Score=112.09  Aligned_cols=90  Identities=17%  Similarity=0.205  Sum_probs=73.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh---------------------HHHHHHHHHHHHhCCCcEEEeCCCC
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS---------------------WQKCVSVMKAALDSGLSVVVDNTNP  333 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~---------------------~~~~~~~~~~~l~~g~~vIiD~tn~  333 (369)
                      |+|+|+|||||||+|+.|++.++..+++.|.+..                     ++.+.+.+...+..|..+|+|+++.
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~~~~v~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Vi~~t~~   80 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLGAKFIEGDDLHPAANIEKMSAGIPLNDDDRWPWLQNLNDASTAAAAKNKVGIITCSAL   80 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcCCeEEeCccccChHHHHHHHcCCCCChhhHHHHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence            5789999999999999999999999999999621                     1334456666777788889999987


Q ss_pred             CHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         334 DKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       334 ~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      .+..|..+    +.++..+.++|+++|.+++.+|.
T Consensus        81 ~~~~r~~~----~~~~~~~~~i~l~~~~e~~~~R~  111 (163)
T TIGR01313        81 KRHYRDIL----REAEPNLHFIYLSGDKDVILERM  111 (163)
T ss_pred             HHHHHHHH----HhcCCCEEEEEEeCCHHHHHHHH
Confidence            66666544    46788899999999999999986

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal

Probab=99.38  E-value=8.6e-13  Score=118.38  Aligned_cols=98  Identities=17%  Similarity=0.179  Sum_probs=72.5

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCc----------
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPV----------  122 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~----------  122 (369)
                      ++||+.+.|+.|+++|++++|+||.            ....++.+++.+|+.  |...+...+....+|.          
T Consensus        81 ~~~g~~e~l~~l~~~g~~~~IvS~~------------~~~~~~~~l~~~g~~~~~~~~~~~~~~g~~~p~~~~~~~~~~k  148 (201)
T TIGR01491        81 LRDYAEELVRWLKEKGLKTAIVSGG------------IMCLAKKVAEKLNPDYVYSNELVFDEKGFIQPDGIVRVTFDNK  148 (201)
T ss_pred             CCccHHHHHHHHHHCCCEEEEEeCC------------cHHHHHHHHHHhCCCeEEEEEEEEcCCCeEecceeeEEccccH
Confidence            5799999999999999999999993            234566777888874  3222222222333333          


Q ss_pred             hhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc-Cch
Q psy4598         123 PGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF-TPE  184 (369)
Q Consensus       123 ~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~-~pe  184 (369)
                      +.+++.+++++    ++++++++||||+.                +|+.+|.++|+.+. .|.
T Consensus       149 ~~~~~~~~~~~----~~~~~~~i~iGDs~----------------~D~~~a~~ag~~~a~~~~  191 (201)
T TIGR01491       149 GEAVERLKREL----NPSLTETVAVGDSK----------------NDLPMFEVADISISLGDE  191 (201)
T ss_pred             HHHHHHHHHHh----CCCHHHEEEEcCCH----------------hHHHHHHhcCCeEEECCC
Confidence            35788888775    68899999999999                89999999999984 343

This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=99.38  E-value=4.1e-12  Score=114.82  Aligned_cols=100  Identities=16%  Similarity=0.338  Sum_probs=74.0

Q ss_pred             ccccEEEEEEcCCCCcHHHHHHHHhccC---CcEEEeCCcchh----HH--------------------HHHHHHHHHHh
Q psy4598         269 AALDSVLIMIGSQGSGKSSFVSTYLKPL---NYTTVNRDTLGS----WQ--------------------KCVSVMKAALD  321 (369)
Q Consensus       269 ~~~~~lIll~G~pGSGKSTla~~L~~~~---~~~~i~~D~~~~----~~--------------------~~~~~~~~~l~  321 (369)
                      ...|.++++.|+|||||||++..+...+   ++++|+.|.++.    |.                    .....+..+++
T Consensus        12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~a~~   91 (199)
T PF06414_consen   12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHPDYDELLKADPDEASELTQKEASRLAEKLIEYAIE   91 (199)
T ss_dssp             -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGSTTHHHHHHHHCCCTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            3568999999999999999999999875   799999999853    11                    22344566788


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         322 SGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       322 ~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      .+.++|+|+|+.+++....+++.+++.||.+.++++.+|.++++.|.
T Consensus        92 ~~~nii~E~tl~~~~~~~~~~~~~k~~GY~v~l~~v~~~~e~s~~rv  138 (199)
T PF06414_consen   92 NRYNIIFEGTLSNPSKLRKLIREAKAAGYKVELYYVAVPPELSIERV  138 (199)
T ss_dssp             CT--EEEE--TTSSHHHHHHHHHHHCTT-EEEEEEE---HHHHHHHH
T ss_pred             cCCCEEEecCCCChhHHHHHHHHHHcCCceEEEEEEECCHHHHHHHH
Confidence            99999999999988888889999999999999999999999998875

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PHA02597 30

Probab=99.37  E-value=1.8e-12  Score=116.48  Aligned_cols=91  Identities=13%  Similarity=0.174  Sum_probs=67.9

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC------CeEEEEecCCCCCCCCchhHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV------PVQMFVATQYDRYRKPVPGMWEY  128 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i------~~~~~~~~~~~~~rKP~~gm~~~  128 (369)
                      ++||+.+.|++|++. +.++++||.+..         ....   +++.+++      .|+.+++.+.   .||+|.++..
T Consensus        75 ~~pG~~e~L~~L~~~-~~~~i~Tn~~~~---------~~~~---~~~~~~l~~~f~~~f~~i~~~~~---~~~kp~~~~~  138 (197)
T PHA02597         75 AYDDALDVINKLKED-YDFVAVTALGDS---------IDAL---LNRQFNLNALFPGAFSEVLMCGH---DESKEKLFIK  138 (197)
T ss_pred             CCCCHHHHHHHHHhc-CCEEEEeCCccc---------hhHH---HHhhCCHHHhCCCcccEEEEecc---CcccHHHHHH
Confidence            689999999999987 578888994321         1111   1122222      3566666654   4788999999


Q ss_pred             HHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhC--CCCccCc
Q psy4598         129 LSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNL--NLAFFTP  183 (369)
Q Consensus       129 ~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~--Gi~f~~p  183 (369)
                      +++++    +  +++++||||+.                .|+++|+++  ||+++..
T Consensus       139 a~~~~----~--~~~~v~vgDs~----------------~di~aA~~a~~Gi~~i~~  173 (197)
T PHA02597        139 AKEKY----G--DRVVCFVDDLA----------------HNLDAAHEALSQLPVIHM  173 (197)
T ss_pred             HHHHh----C--CCcEEEeCCCH----------------HHHHHHHHHHcCCcEEEe
Confidence            99985    4  78899999999                899999999  9999765

2 hypothetical protein; Provisional

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=99.36  E-value=5.1e-12  Score=112.59  Aligned_cols=97  Identities=21%  Similarity=0.268  Sum_probs=80.9

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchh----------------HHHHHHHHHHHHhCCCcEEE
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGS----------------WQKCVSVMKAALDSGLSVVV  328 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~----------------~~~~~~~~~~~l~~g~~vIi  328 (369)
                      .++.+|+|+|+|||||||+++.|...+     ++.+++.|.++.                +..+...+...+..|.+||+
T Consensus        16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~VI~   95 (184)
T TIGR00455        16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLGFSEEDRKENIRRIGEVAKLFVRNGIIVIT   95 (184)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccCCCHHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence            456899999999999999999999874     367889888741                23344556667889999999


Q ss_pred             eCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         329 DNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       329 D~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      |++++.+..|..+..++...  ++.++|+++|.+++.+|+
T Consensus        96 d~~~~~~~~r~~~~~~~~~~--~~~~v~l~~~~e~~~~R~  133 (184)
T TIGR00455        96 SFISPYRADRQMVRELIEKG--EFIEVFVDCPLEVCEQRD  133 (184)
T ss_pred             ecCCCCHHHHHHHHHhCcCC--CeEEEEEeCCHHHHHHhC
Confidence            99999999999998887754  688999999999999986

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]

Probab=99.36  E-value=6.3e-12  Score=117.95  Aligned_cols=130  Identities=22%  Similarity=0.278  Sum_probs=92.9

Q ss_pred             CCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCC------------CCHH
Q psy4598          23 NSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKK------------MSTR   90 (369)
Q Consensus        23 ~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~------------~~~~   90 (369)
                      ...+.++||+||||+....             .+||+.+.|+.|+++|.+++++||.+..++..            .+.+
T Consensus         6 ~~y~~~l~DlDGvl~~G~~-------------~ipga~e~l~~L~~~g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~   72 (269)
T COG0647           6 DKYDGFLFDLDGVLYRGNE-------------AIPGAAEALKRLKAAGKPVIFLTNNSTRSREVVAARLSSLGGVDVTPD   72 (269)
T ss_pred             hhcCEEEEcCcCceEeCCc-------------cCchHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHH
Confidence            4557899999999996543             79999999999999999999999988765430            0111


Q ss_pred             -----------HHHH-------------HHHHHHHHcCCCe---------E-E-------------------------EE
Q psy4598          91 -----------DFQA-------------KAEKIIKSLNVPV---------Q-M-------------------------FV  111 (369)
Q Consensus        91 -----------~~~~-------------~i~~~l~~l~i~~---------~-~-------------------------~~  111 (369)
                                 -+.+             .+...++.+|+..         + +                         |+
T Consensus        73 ~i~TS~~at~~~l~~~~~~~kv~viG~~~l~~~l~~~G~~~~~~~~~~~~d~Vv~g~d~~~~~e~l~~a~~~i~~g~~fI  152 (269)
T COG0647          73 DIVTSGDATADYLAKQKPGKKVYVIGEEGLKEELEGAGFELVDEEEPARVDAVVVGLDRTLTYEKLAEALLAIAAGAPFI  152 (269)
T ss_pred             HeecHHHHHHHHHHhhCCCCEEEEECCcchHHHHHhCCcEEeccCCCCcccEEEEecCCCCCHHHHHHHHHHHHcCCcEE
Confidence                       0011             1223344444311         1 1                         22


Q ss_pred             ecCC-----------------------------CCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCC
Q psy4598         112 ATQY-----------------------------DRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKK  162 (369)
Q Consensus       112 ~~~~-----------------------------~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~  162 (369)
                      |+..                             ....||++.|++.+++.+    +.++++++||||+.-          
T Consensus       153 ~tNpD~~~p~~~g~~pgaGai~~~~~~~tg~~~~~~GKP~~~i~~~al~~~----~~~~~~~~mVGD~~~----------  218 (269)
T COG0647         153 ATNPDLTVPTERGLRPGAGAIAALLEQATGREPTVIGKPSPAIYEAALEKL----GLDRSEVLMVGDRLD----------  218 (269)
T ss_pred             EeCCCccccCCCCCccCcHHHHHHHHHhhCCcccccCCCCHHHHHHHHHHh----CCCcccEEEEcCCch----------
Confidence            2211                             133799999999999985    688889999999994          


Q ss_pred             CCCCcccHHHHHhCCCCccCch
Q psy4598         163 KDFACTDHLFAFNLNLAFFTPE  184 (369)
Q Consensus       163 ~d~s~~D~~~A~n~Gi~f~~pe  184 (369)
                           +||++|+++||.++.+.
T Consensus       219 -----TDI~~a~~~G~~t~LV~  235 (269)
T COG0647         219 -----TDILGAKAAGLDTLLVL  235 (269)
T ss_pred             -----hhHHHHHHcCCCEEEEc
Confidence                 99999999999986653

>PRK10444 UMP phosphatase; Provisional

Probab=99.34  E-value=1.9e-11  Score=114.36  Aligned_cols=47  Identities=21%  Similarity=0.218  Sum_probs=42.0

Q ss_pred             CCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         118 YRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       118 ~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      ..||+|.|++.+++++    ++++++++||||+..               +|+.+|+++|++++..
T Consensus       172 ~gKP~~~~~~~~~~~~----~~~~~~~v~IGD~~~---------------tDi~~A~~~G~~~vlV  218 (248)
T PRK10444        172 VGKPSPWIIRAALNKM----QAHSEETVIVGDNLR---------------TDILAGFQAGLETILV  218 (248)
T ss_pred             cCCCCHHHHHHHHHHc----CCCcccEEEECCCcH---------------HHHHHHHHcCCCEEEE
Confidence            3799999999999985    689999999999973               7999999999999655

>PLN02811 hydrolase

Probab=99.33  E-value=4.4e-12  Score=116.23  Aligned_cols=104  Identities=17%  Similarity=0.205  Sum_probs=80.2

Q ss_pred             ccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecC--CCCCCCCchhHHHH
Q psy4598          53 KLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQ--YDRYRKPVPGMWEY  128 (369)
Q Consensus        53 ~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~--~~~~rKP~~gm~~~  128 (369)
                      ..++|||.+.|+.|+++|++++|+||.+        ...+..++   ++..++  +|+.+++.+  +....||+|.+|..
T Consensus        77 ~~l~~gv~e~l~~L~~~g~~~~i~S~~~--------~~~~~~~~---~~~~~l~~~f~~i~~~~~~~~~~~KP~p~~~~~  145 (220)
T PLN02811         77 SDLMPGAERLVRHLHAKGIPIAIATGSH--------KRHFDLKT---QRHGELFSLMHHVVTGDDPEVKQGKPAPDIFLA  145 (220)
T ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCCc--------hhhHHHHH---cccHHHHhhCCEEEECChhhccCCCCCcHHHHH
Confidence            3468999999999999999999999942        11121111   112233  467778887  67788999999999


Q ss_pred             HHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCch
Q psy4598         129 LSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPE  184 (369)
Q Consensus       129 ~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~pe  184 (369)
                      ++++++ +.++++++|+||||+.                .|+++|+++|++++...
T Consensus       146 a~~~~~-~~~~~~~~~v~IgDs~----------------~di~aA~~aG~~~i~v~  184 (220)
T PLN02811        146 AARRFE-DGPVDPGKVLVFEDAP----------------SGVEAAKNAGMSVVMVP  184 (220)
T ss_pred             HHHHhC-CCCCCccceEEEeccH----------------hhHHHHHHCCCeEEEEe
Confidence            999863 1138899999999999                89999999999997653

>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457

Probab=99.32  E-value=1.2e-11  Score=115.71  Aligned_cols=47  Identities=15%  Similarity=0.116  Sum_probs=42.0

Q ss_pred             CCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         118 YRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       118 ~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      ..||+|.||+.+++.+    ++++++++||||+..               +|+.+|+++|++++..
T Consensus       176 ~gKP~~~~~~~~~~~~----~~~~~~~~~VGD~~~---------------~Di~~a~~~G~~~v~v  222 (249)
T TIGR01457       176 IGKPNAIIMEKAVEHL----GTEREETLMVGDNYL---------------TDIRAGIDAGIDTLLV  222 (249)
T ss_pred             cCCChHHHHHHHHHHc----CCCcccEEEECCCch---------------hhHHHHHHcCCcEEEE
Confidence            3699999999999985    689999999999962               7999999999998655

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.

>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family

Probab=99.31  E-value=1.3e-11  Score=117.44  Aligned_cols=46  Identities=28%  Similarity=0.455  Sum_probs=41.4

Q ss_pred             CCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         119 RKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       119 rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      .||+|.||+.+++++    ++++++++||||+..               +|+++|+++||+++..
T Consensus       201 gKP~p~~~~~~~~~~----~~~~~~~lmIGD~~~---------------tDI~~A~~aGi~si~V  246 (279)
T TIGR01452       201 GKPSPYMFECITENF----SIDPARTLMVGDRLE---------------TDILFGHRCGMTTVLV  246 (279)
T ss_pred             CCCCHHHHHHHHHHh----CCChhhEEEECCChH---------------HHHHHHHHcCCcEEEE
Confidence            699999999999986    689999999999952               8999999999998655

This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.

>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase

Probab=99.30  E-value=6.7e-13  Score=116.83  Aligned_cols=83  Identities=13%  Similarity=0.195  Sum_probs=68.4

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++||+.+.|+       +++|+||.+            ...+...++.+|+.  |+.+++.+.....||+|.+|+.++++
T Consensus        91 ~~~g~~~~L~-------~~~i~Tn~~------------~~~~~~~l~~~~l~~~fd~v~~~~~~~~~KP~p~~f~~~~~~  151 (175)
T TIGR01493        91 PWPDSAAALA-------RVAILSNAS------------HWAFDQFAQQAGLPWYFDRAFSVDTVRAYKPDPVVYELVFDT  151 (175)
T ss_pred             CCCchHHHHH-------HHhhhhCCC------------HHHHHHHHHHCCCHHHHhhhccHhhcCCCCCCHHHHHHHHHH
Confidence            5788888887       378999943            23455667888874  78778888778899999999999999


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhC
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNL  176 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~  176 (369)
                      +    ++++++|+||||+.                .|+.+|+++
T Consensus       152 ~----~~~p~~~l~vgD~~----------------~Di~~A~~~  175 (175)
T TIGR01493       152 V----GLPPDRVLMVAAHQ----------------WDLIGARKF  175 (175)
T ss_pred             H----CCCHHHeEeEecCh----------------hhHHHHhcC
Confidence            6    78999999999998                899999864

The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o

>PLN02645 phosphoglycolate phosphatase

Probab=99.27  E-value=2.4e-11  Score=117.32  Aligned_cols=48  Identities=27%  Similarity=0.368  Sum_probs=41.2

Q ss_pred             CCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcC
Q psy4598          23 NSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIG   83 (369)
Q Consensus        23 ~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~   83 (369)
                      .+.|+++||+||||.....             ++||+.++|++|+++|++++++||.+.-.
T Consensus        26 ~~~~~~~~D~DGtl~~~~~-------------~~~ga~e~l~~lr~~g~~~~~~TN~~~~~   73 (311)
T PLN02645         26 DSVETFIFDCDGVIWKGDK-------------LIEGVPETLDMLRSMGKKLVFVTNNSTKS   73 (311)
T ss_pred             HhCCEEEEeCcCCeEeCCc-------------cCcCHHHHHHHHHHCCCEEEEEeCCCCCC
Confidence            4578999999999986431             68999999999999999999999987443

>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit

Probab=99.26  E-value=3.3e-11  Score=106.06  Aligned_cols=118  Identities=14%  Similarity=0.143  Sum_probs=89.8

Q ss_pred             CCceEEEEecCCceeecCCCCCCCC-CccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHH
Q psy4598          23 NSAKIASFDLDGTLITTKSGKVFPV-DTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIK  101 (369)
Q Consensus        23 ~~~k~~~fDlDgTLi~~~sg~~~~~-~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~  101 (369)
                      ...|.++||.||||.+.   ..|.. ....++.+.--=...|+.|+++|++++|+||++            ...+..+++
T Consensus         5 ~~i~~~v~d~dGv~tdg---~~~~~~~g~~~~~~~~~D~~~~~~L~~~Gi~laIiT~k~------------~~~~~~~l~   69 (169)
T TIGR02726         5 KNIKLVILDVDGVMTDG---RIVINDEGIESRNFDIKDGMGVIVLQLCGIDVAIITSKK------------SGAVRHRAE   69 (169)
T ss_pred             ccCeEEEEeCceeeECC---eEEEcCCCcEEEEEecchHHHHHHHHHCCCEEEEEECCC------------cHHHHHHHH
Confidence            34799999999999854   34433 334455444334567999999999999999954            234566788


Q ss_pred             HcCCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         102 SLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       102 ~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      .+|+. ..+-      ..||+|.+++.+++++    ++++++++||||+.                .|+.+++++|+.+.
T Consensus        70 ~lgi~-~~f~------~~kpkp~~~~~~~~~l----~~~~~ev~~iGD~~----------------nDi~~~~~ag~~~a  122 (169)
T TIGR02726        70 ELKIK-RFHE------GIKKKTEPYAQMLEEM----NISDAEVCYVGDDL----------------VDLSMMKRVGLAVA  122 (169)
T ss_pred             HCCCc-EEEe------cCCCCHHHHHHHHHHc----CcCHHHEEEECCCH----------------HHHHHHHHCCCeEE
Confidence            88875 2221      1389999999999986    78999999999999                89999999999985


Q ss_pred             C
Q psy4598         182 T  182 (369)
Q Consensus       182 ~  182 (369)
                      -
T Consensus       123 m  123 (169)
T TIGR02726       123 V  123 (169)
T ss_pred             C
Confidence            3

Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.

>PRK14527 adenylate kinase; Provisional

Probab=99.26  E-value=3.9e-11  Score=107.63  Aligned_cols=99  Identities=15%  Similarity=0.282  Sum_probs=77.7

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch-h-------H----------------HHHHHHHHHHHhC--C
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG-S-------W----------------QKCVSVMKAALDS--G  323 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~-~-------~----------------~~~~~~~~~~l~~--g  323 (369)
                      .++++|+++|+|||||||+|+.|++.+++.+++.|++- .       +                +.+...+.+.+..  +
T Consensus         4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~l~~~~l~~~~~   83 (191)
T PRK14527          4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVARGTELGQRAKPIMEAGDLVPDELILALIRDELAGMEP   83 (191)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHhcCcHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCC
Confidence            45789999999999999999999999999999987652 1       0                1123334444443  4


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHHHhcCCeEE-EEEEeCCHHHHHHHc
Q psy4598         324 LSVVVDNTNPDKESRHRYIEAAKQHGVRCI-AVHMNISKEHAKHNI  368 (369)
Q Consensus       324 ~~vIiD~tn~~~~~r~~~~~la~~~~~~v~-~v~l~~~~e~~~~Rn  368 (369)
                      ..+|+|+...+..++..+..+++..+.++. ++++++|.+++.+|-
T Consensus        84 ~~~VlDGfpr~~~q~~~~~~~~~~~g~~~~~vi~l~~~~~~~~~Rl  129 (191)
T PRK14527         84 VRVIFDGFPRTLAQAEALDRLLEELGARLLAVVLLEVPDEELIRRI  129 (191)
T ss_pred             CcEEEcCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHH
Confidence            579999977788888888888888887764 689999999999883

>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed

Probab=99.26  E-value=9.1e-12  Score=114.13  Aligned_cols=94  Identities=13%  Similarity=0.113  Sum_probs=70.3

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCeEEE------EecCCCCCCCCchhHH--
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMF------VATQYDRYRKPVPGMW--  126 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~~~~------~~~~~~~~rKP~~gm~--  126 (369)
                      ++||+.+.|+.|+++|++++|+||..            ...++.+++.+ ++.+.+      +..+.....||.|..+  
T Consensus        75 l~pG~~e~l~~l~~~g~~~~IvS~~~------------~~~i~~il~~~-~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~  141 (219)
T PRK09552         75 IREGFHEFVQFVKENNIPFYVVSGGM------------DFFVYPLLQGL-IPKEQIYCNGSDFSGEYITITWPHPCDEHC  141 (219)
T ss_pred             cCcCHHHHHHHHHHcCCeEEEECCCc------------HHHHHHHHHHh-CCcCcEEEeEEEecCCeeEEeccCCccccc
Confidence            68999999999999999999999942            34566677776 532222      2333344567776542  


Q ss_pred             --------HHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         127 --------EYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       127 --------~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                              ..+++++    +.++++++||||+.                +|+.+|+++|+.+.
T Consensus       142 ~~~~~~~K~~~l~~~----~~~~~~~i~iGDs~----------------~Di~aa~~Ag~~~a  184 (219)
T PRK09552        142 QNHCGCCKPSLIRKL----SDTNDFHIVIGDSI----------------TDLEAAKQADKVFA  184 (219)
T ss_pred             cccCCCchHHHHHHh----ccCCCCEEEEeCCH----------------HHHHHHHHCCccee
Confidence                    4566665    57788999999999                89999999999776

>PRK14532 adenylate kinase; Provisional

Probab=99.25  E-value=4.9e-11  Score=106.55  Aligned_cols=93  Identities=10%  Similarity=0.235  Sum_probs=73.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hhH-----------HH------------HHHHHHHHH---hCCCcEE
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GSW-----------QK------------CVSVMKAAL---DSGLSVV  327 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~~-----------~~------------~~~~~~~~l---~~g~~vI  327 (369)
                      |+|+|+|||||||+|+.|++.+++.+|+.|++ +..           +.            ..+.+.+.+   ..+..+|
T Consensus         3 i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~g~v   82 (188)
T PRK14532          3 LILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIASGSELGQRVKGIMDRGELVSDEIVIALIEERLPEAEAAGGAI   82 (188)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHHcCCHHHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCcEE
Confidence            78999999999999999999999999999655 310           00            111122222   3456899


Q ss_pred             EeCCCCCHHHHHHHHHHHHhcCCeE-EEEEEeCCHHHHHHH
Q psy4598         328 VDNTNPDKESRHRYIEAAKQHGVRC-IAVHMNISKEHAKHN  367 (369)
Q Consensus       328 iD~tn~~~~~r~~~~~la~~~~~~v-~~v~l~~~~e~~~~R  367 (369)
                      +|++..+..++..+.++++..+..+ .+++|++|.+++.+|
T Consensus        83 ldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~R  123 (188)
T PRK14532         83 FDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIER  123 (188)
T ss_pred             EeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence            9999999999999988888888765 799999999999887

>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family

Probab=99.23  E-value=6.4e-11  Score=105.13  Aligned_cols=94  Identities=15%  Similarity=0.268  Sum_probs=70.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hhH-----------H------------HHHHHHHHHHhC--CCcEE
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GSW-----------Q------------KCVSVMKAALDS--GLSVV  327 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~~-----------~------------~~~~~~~~~l~~--g~~vI  327 (369)
                      +|+|+|+|||||||+|+.|++.+++.+|+.+++ +..           +            .....+.+.+..  +..+|
T Consensus         1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~~~~v   80 (183)
T TIGR01359         1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGSENGELIESMIKNGKIVPSEVTVKLLKNAIQADGSKKFL   80 (183)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccCCCcEE
Confidence            489999999999999999999999999998544 311           0            112233333332  56899


Q ss_pred             EeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         328 VDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       328 iD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      +|+...+.+.+..|.+++.....+-.++++++|.+++.+|
T Consensus        81 lDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R  120 (183)
T TIGR01359        81 IDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKR  120 (183)
T ss_pred             EeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence            9999988888888887764332333589999999999887

This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.

>PLN02954 phosphoserine phosphatase

Probab=99.23  E-value=2.2e-11  Score=111.56  Aligned_cols=93  Identities=15%  Similarity=0.186  Sum_probs=70.3

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCe-EEE----Ee--------cCC---CCC
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPV-QMF----VA--------TQY---DRY  118 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~-~~~----~~--------~~~---~~~  118 (369)
                      ++||+.+.|+.|+++|++++|+||.            .+..++.+++.+|++. .++    ..        ...   ...
T Consensus        85 l~pg~~e~l~~l~~~g~~~~IvS~~------------~~~~i~~~l~~~gi~~~~~~~~~~~~~~~g~~~g~~~~~~~~~  152 (224)
T PLN02954         85 LSPGIPELVKKLRARGTDVYLVSGG------------FRQMIAPVAAILGIPPENIFANQILFGDSGEYAGFDENEPTSR  152 (224)
T ss_pred             CCccHHHHHHHHHHCCCEEEEECCC------------cHHHHHHHHHHhCCChhhEEEeEEEEcCCCcEECccCCCcccC
Confidence            5799999999999999999999993            2345677788888852 121    11        110   123


Q ss_pred             CCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         119 RKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       119 rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      .+|+|.+++.+.+++    +  .++++||||+.                +|+.+|+++|+.++
T Consensus       153 ~~~K~~~i~~~~~~~----~--~~~~i~iGDs~----------------~Di~aa~~~~~~~~  193 (224)
T PLN02954        153 SGGKAEAVQHIKKKH----G--YKTMVMIGDGA----------------TDLEARKPGGADLF  193 (224)
T ss_pred             CccHHHHHHHHHHHc----C--CCceEEEeCCH----------------HHHHhhhcCCCCEE
Confidence            577888999888764    3  36899999999                89999999888864

>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459

Probab=99.23  E-value=2.6e-11  Score=112.88  Aligned_cols=46  Identities=17%  Similarity=0.258  Sum_probs=40.0

Q ss_pred             CCCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCC
Q psy4598          22 CNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQG   80 (369)
Q Consensus        22 ~~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~   80 (369)
                      ..+.+.++||+||||....             .++||+.+.|++|+++|++++|+||.+
T Consensus         5 ~~~~~~~~~D~dG~l~~~~-------------~~~pga~e~L~~L~~~G~~~~ivTN~~   50 (242)
T TIGR01459         5 INDYDVFLLDLWGVIIDGN-------------HTYPGAVQNLNKIIAQGKPVYFVSNSP   50 (242)
T ss_pred             hhcCCEEEEecccccccCC-------------ccCccHHHHHHHHHHCCCEEEEEeCCC
Confidence            3567899999999998643             169999999999999999999999964

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)

>PRK00889 adenylylsulfate kinase; Provisional

Probab=99.21  E-value=1.2e-10  Score=102.76  Aligned_cols=93  Identities=16%  Similarity=0.242  Sum_probs=71.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchh----------------HHHHHHHHHHHHhCCCcEEEeC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGS----------------WQKCVSVMKAALDSGLSVVVDN  330 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~----------------~~~~~~~~~~~l~~g~~vIiD~  330 (369)
                      ..+|+|+|+|||||||+++.|+..+     ++.+++.|.++.                ++.+...+......|..||+|+
T Consensus         4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~~~~~~~~~r~~~~~~~~~~a~~~~~~g~~vi~~~   83 (175)
T PRK00889          4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSKGLGFSKEDRDTNIRRIGFVANLLTRHGVIVLVSA   83 (175)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhcCCCCChhhHHHHHHHHHHHHHHHHhCCCEEEEec
Confidence            4689999999999999999999875     367899998642                1222334444556788899999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         331 TNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       331 tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      +++....|..+..++    ..+.+||+++|.+++.+|+
T Consensus        84 ~~~~~~~~~~l~~~~----~~~~~v~l~~~~e~~~~R~  117 (175)
T PRK00889         84 ISPYRETREEVRANI----GNFLEVFVDAPLEVCEQRD  117 (175)
T ss_pred             CCCCHHHHHHHHhhc----CCeEEEEEcCCHHHHHHhC
Confidence            988777776665543    3578999999999999986

>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional

Probab=99.21  E-value=9.4e-11  Score=108.51  Aligned_cols=125  Identities=14%  Similarity=0.194  Sum_probs=83.9

Q ss_pred             CCCce-EEEEecCCceeecCCCCC-----CCCCc-----------------cccccccccHHHHHHHHHHCCcEEEEEec
Q psy4598          22 CNSAK-IASFDLDGTLITTKSGKV-----FPVDT-----------------HDWKLLFSNIESVLKQYLDDGYKLVIFTN   78 (369)
Q Consensus        22 ~~~~k-~~~fDlDgTLi~~~sg~~-----~~~~~-----------------~d~~~~~p~v~~~L~~L~~~G~~i~i~TN   78 (369)
                      ..+.+ .+.||+|+|++.+.....     |..+.                 .....++||+.+.|+.|+++|++|+++||
T Consensus        59 ~~~~p~av~~DIDeTvldnsp~~~~~~~~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iVTn  138 (237)
T PRK11009         59 EGRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFITG  138 (237)
T ss_pred             cCCCCcEEEEECcCccccCCchheeeeeccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEEeC
Confidence            34445 899999999997532111     11111                 11233678899999999999999999999


Q ss_pred             CCCcCCCCCCHHHHHHHHHHHHHHcCCC----eEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccc
Q psy4598          79 QGAIGRKKMSTRDFQAKAEKIIKSLNVP----VQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRA  154 (369)
Q Consensus        79 q~gi~~~~~~~~~~~~~i~~~l~~l~i~----~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~  154 (369)
                      .+.        .....-...+++.+|+|    |.++++.+.  ..||.+..   .++++    ++    ++||||+.   
T Consensus       139 R~~--------~k~~~t~~~Llk~~gip~~~~f~vil~gd~--~~K~~K~~---~l~~~----~i----~I~IGDs~---  194 (237)
T PRK11009        139 RTA--------TKTETVSKTLADDFHIPADNMNPVIFAGDK--PGQYTKTQ---WLKKK----NI----RIFYGDSD---  194 (237)
T ss_pred             CCC--------cccHHHHHHHHHHcCCCcccceeEEEcCCC--CCCCCHHH---HHHhc----CC----eEEEcCCH---
Confidence            531        11122345566778985    345555543  36777653   33443    33    89999999   


Q ss_pred             cccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         155 ANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       155 ~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                                   +|+++|+++|++++-.
T Consensus       195 -------------~Di~aA~~AGi~~I~v  210 (237)
T PRK11009        195 -------------NDITAAREAGARGIRI  210 (237)
T ss_pred             -------------HHHHHHHHcCCcEEEE
Confidence                         8999999999998754

>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional

Probab=99.21  E-value=6e-11  Score=105.90  Aligned_cols=116  Identities=16%  Similarity=0.178  Sum_probs=83.1

Q ss_pred             CceEEEEecCCceeecCCCCCCCCC-ccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHH
Q psy4598          24 SAKIASFDLDGTLITTKSGKVFPVD-THDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKS  102 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~sg~~~~~~-~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~  102 (369)
                      +.|+++||+||||+...   .|... ...+..+.-.=...|+.|+++|++++|+||.+            ...+..+++.
T Consensus        20 ~ikli~~D~Dgtl~~~~---i~~~~~~~~~~~~~~~d~~~i~~L~~~Gi~v~I~T~~~------------~~~v~~~l~~   84 (183)
T PRK09484         20 NIRLLICDVDGVFSDGL---IYMGNNGEELKAFNVRDGYGIRCLLTSGIEVAIITGRK------------SKLVEDRMTT   84 (183)
T ss_pred             CceEEEEcCCeeeecCE---EEEcCCCCEEEEEeccchHHHHHHHHCCCEEEEEeCCC------------cHHHHHHHHH
Confidence            47899999999998642   12111 11122111111257888999999999999943            2345667888


Q ss_pred             cCCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         103 LNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       103 l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      +|+..  ++.     ..+|.+..+..+++++    ++++++++||||+.                .|+.+|+++|+.+.
T Consensus        85 lgl~~--~f~-----g~~~k~~~l~~~~~~~----gl~~~ev~~VGDs~----------------~D~~~a~~aG~~~~  136 (183)
T PRK09484         85 LGITH--LYQ-----GQSNKLIAFSDLLEKL----AIAPEQVAYIGDDL----------------IDWPVMEKVGLSVA  136 (183)
T ss_pred             cCCce--eec-----CCCcHHHHHHHHHHHh----CCCHHHEEEECCCH----------------HHHHHHHHCCCeEe
Confidence            88742  221     2356789999999986    78999999999999                89999999999964

>PRK14531 adenylate kinase; Provisional

Probab=99.21  E-value=1.5e-10  Score=103.27  Aligned_cols=98  Identities=10%  Similarity=0.174  Sum_probs=74.7

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh-------H----HH------------HHHHHHHHHh--CCC
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS-------W----QK------------CVSVMKAALD--SGL  324 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~-------~----~~------------~~~~~~~~l~--~g~  324 (369)
                      |+.-|+++|+|||||||+++.|++.+++.+|+.+++ +.       +    +.            +.....+.+.  .+.
T Consensus         1 ~~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~~~~~~~~~~~~~G~~v~d~l~~~~~~~~l~~~~~~   80 (183)
T PRK14531          1 MKQRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGSALGQEAEAVMNRGELVSDALVLAIVESQLKALNSG   80 (183)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhhccCC
Confidence            345689999999999999999999999999998554 31       0    00            1122222332  355


Q ss_pred             cEEEeCCCCCHHHHHHHHHHHHhcCCeE-EEEEEeCCHHHHHHHc
Q psy4598         325 SVVVDNTNPDKESRHRYIEAAKQHGVRC-IAVHMNISKEHAKHNI  368 (369)
Q Consensus       325 ~vIiD~tn~~~~~r~~~~~la~~~~~~v-~~v~l~~~~e~~~~Rn  368 (369)
                      .+|+|+...+..++..+.+++...+.++ .++++++|.+++.+|-
T Consensus        81 g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl  125 (183)
T PRK14531         81 GWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERL  125 (183)
T ss_pred             cEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHh
Confidence            7999999999999998888888877665 4899999999999883

>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase

Probab=99.21  E-value=5.2e-11  Score=109.26  Aligned_cols=96  Identities=11%  Similarity=0.131  Sum_probs=74.1

Q ss_pred             cccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHc---CC--CeEEEEecCCCCCCCCchhHHHH
Q psy4598          54 LLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSL---NV--PVQMFVATQYDRYRKPVPGMWEY  128 (369)
Q Consensus        54 ~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l---~i--~~~~~~~~~~~~~rKP~~gm~~~  128 (369)
                      .+||++.+.|++|+++|++++|+||.+.        ..    ...+++..   ++  .|+.++...  ..+||+|.+|..
T Consensus        95 ~lypgv~e~L~~Lk~~G~~l~I~Sn~s~--------~~----~~~~~~~~~~~~L~~~f~~~fd~~--~g~KP~p~~y~~  160 (220)
T TIGR01691        95 HLYPDVPPALEAWLQLGLRLAVYSSGSV--------PA----QKLLFGHSDAGNLTPYFSGYFDTT--VGLKTEAQSYVK  160 (220)
T ss_pred             CcCcCHHHHHHHHHHCCCEEEEEeCCCH--------HH----HHHHHhhccccchhhhcceEEEeC--cccCCCHHHHHH
Confidence            3799999999999999999999999541        11    12223332   22  255444332  247999999999


Q ss_pred             HHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         129 LSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       129 ~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      +++++    ++++++++||||+.                .|+++|+++||+++..
T Consensus       161 i~~~l----gv~p~e~lfVgDs~----------------~Di~AA~~AG~~ti~v  195 (220)
T TIGR01691       161 IAGQL----GSPPREILFLSDII----------------NELDAARKAGLHTGQL  195 (220)
T ss_pred             HHHHh----CcChhHEEEEeCCH----------------HHHHHHHHcCCEEEEE
Confidence            99996    78999999999998                8999999999998643

This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.

>PRK03846 adenylylsulfate kinase; Provisional

Probab=99.20  E-value=1.4e-10  Score=104.78  Aligned_cols=100  Identities=21%  Similarity=0.272  Sum_probs=80.7

Q ss_pred             ccccccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchh----------------HHHHHHHHHHHHhCCCc
Q psy4598         267 MKAALDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGS----------------WQKCVSVMKAALDSGLS  325 (369)
Q Consensus       267 ~~~~~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~----------------~~~~~~~~~~~l~~g~~  325 (369)
                      ..++.+.+|+|+|+|||||||+++.|+..+     +..+++.|.++.                +..+...+...+..|..
T Consensus        19 ~~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~G~~   98 (198)
T PRK03846         19 LHGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVAKLMVDAGLV   98 (198)
T ss_pred             hcCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhhcCCcCcccHHHHHHHHHHHHHHHhhCCCE
Confidence            344567899999999999999999999864     478888887631                33444556777788988


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         326 VVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       326 vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      ||.+..++.++.|+.+++++++.  .+.+||+++|.+++.+|+
T Consensus        99 VI~~~~~~~~~~R~~~r~~l~~~--~~i~V~L~~~~e~~~~R~  139 (198)
T PRK03846         99 VLTAFISPHRAERQMVRERLGEG--EFIEVFVDTPLAICEARD  139 (198)
T ss_pred             EEEEeCCCCHHHHHHHHHHcccC--CEEEEEEcCCHHHHHhcC
Confidence            88888888899999999988765  466899999999999984

>TIGR01686 FkbH FkbH-like domain

Probab=99.19  E-value=1.2e-10  Score=112.87  Aligned_cols=118  Identities=13%  Similarity=0.151  Sum_probs=89.6

Q ss_pred             CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHH-
Q psy4598          24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKS-  102 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~-  102 (369)
                      ..|++++|+|+||+...-|..-..+. .....||++.+.|++|+++|++++|+||.+            ...+..+++. 
T Consensus         2 ~~k~~v~DlDnTlw~gv~~e~g~~~i-~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~------------~~~a~~~l~~~   68 (320)
T TIGR01686         2 ALKVLVLDLDNTLWGGVLGEDGIDNL-NLSPLHKTLQEKIKTLKKQGFLLALASKND------------EDDAKKVFERR   68 (320)
T ss_pred             CeEEEEEcCCCCCCCCEEccCCcccc-ccCccHHHHHHHHHHHHhCCCEEEEEcCCC------------HHHHHHHHHhC
Confidence            46999999999998643121111111 112258999999999999999999999953            2345566777 


Q ss_pred             ---cCCC--eEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCC
Q psy4598         103 ---LNVP--VQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLN  177 (369)
Q Consensus       103 ---l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~G  177 (369)
                         ++++  |..+.+.     .||+|..+..+++++    ++++++++||||+.                .|+..+++++
T Consensus        69 ~~~~~~~~~f~~~~~~-----~~pk~~~i~~~~~~l----~i~~~~~vfidD~~----------------~d~~~~~~~l  123 (320)
T TIGR01686        69 KDFILQAEDFDARSIN-----WGPKSESLRKIAKKL----NLGTDSFLFIDDNP----------------AERANVKITL  123 (320)
T ss_pred             ccccCcHHHeeEEEEe-----cCchHHHHHHHHHHh----CCCcCcEEEECCCH----------------HHHHHHHHHC
Confidence               6764  6655443     589999999999996    68999999999999                8999999976


Q ss_pred             CC
Q psy4598         178 LA  179 (369)
Q Consensus       178 i~  179 (369)
                      -.
T Consensus       124 p~  125 (320)
T TIGR01686       124 PV  125 (320)
T ss_pred             CC
Confidence            53

The C-terminal portion of this domain is unique to this family (by BLAST).

>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458

Probab=99.19  E-value=2.1e-10  Score=107.88  Aligned_cols=46  Identities=13%  Similarity=0.056  Sum_probs=41.5

Q ss_pred             CCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         119 RKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       119 rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      +||+|.||+.+++++    ++++++++||||+..               +|+.+|+++|++++..
T Consensus       178 gKP~p~~~~~~~~~~----~~~~~~~~~vGD~~~---------------~Di~~a~~~G~~~i~v  223 (257)
T TIGR01458       178 GKPSKTFFLEALRAT----GCEPEEAVMIGDDCR---------------DDVGGAQDCGMRGIQV  223 (257)
T ss_pred             cCCCHHHHHHHHHHh----CCChhhEEEECCCcH---------------HHHHHHHHcCCeEEEE
Confidence            699999999999986    689999999999962               7999999999999655

This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.19  E-value=9.5e-11  Score=123.53  Aligned_cols=98  Identities=19%  Similarity=0.245  Sum_probs=82.4

Q ss_pred             ccccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchh----------------HHHHHHHHHHHHhCCCcEE
Q psy4598         269 AALDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGS----------------WQKCVSVMKAALDSGLSVV  327 (369)
Q Consensus       269 ~~~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~----------------~~~~~~~~~~~l~~g~~vI  327 (369)
                      .+++.+|+|+|+|||||||+|++|++.+     ++.+|+.|.++.                ++.+...+...++.|.+||
T Consensus       457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~~~~~~r~~~~~~l~~~a~~~~~~G~~Vi  536 (632)
T PRK05506        457 GQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLGFSDADRVENIRRVAEVARLMADAGLIVL  536 (632)
T ss_pred             CCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEE
Confidence            3357999999999999999999999875     568999999842                3445566667778899999


Q ss_pred             EeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         328 VDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       328 iD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      +|++++.+..|+.+++++++.  .+.++|+++|.+++.+|+
T Consensus       537 vda~~~~~~~R~~~r~l~~~~--~~~~v~L~~~~e~~~~R~  575 (632)
T PRK05506        537 VSFISPFREERELARALHGEG--EFVEVFVDTPLEVCEARD  575 (632)
T ss_pred             EECCCCCHHHHHHHHHhcccC--CeEEEEECCCHHHHHhhC
Confidence            999999999999888877654  678999999999999986

>KOG2882|consensus

Probab=99.19  E-value=1.6e-10  Score=108.11  Aligned_cols=50  Identities=22%  Similarity=0.241  Sum_probs=43.0

Q ss_pred             CCCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCC
Q psy4598          22 CNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGR   84 (369)
Q Consensus        22 ~~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~   84 (369)
                      ..+.-.++||-||+|+.-.             .+.||++++|..|++.|..++++||.+..++
T Consensus        19 l~~~DtfifDcDGVlW~g~-------------~~ipGs~e~l~~L~~~gK~i~fvTNNStksr   68 (306)
T KOG2882|consen   19 LDSFDTFIFDCDGVLWLGE-------------KPIPGSPEALNLLKSLGKQIIFVTNNSTKSR   68 (306)
T ss_pred             HhhcCEEEEcCCcceeecC-------------CCCCChHHHHHHHHHcCCcEEEEeCCCcchH
Confidence            3556789999999999732             2799999999999999999999999987664

>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated

Probab=99.18  E-value=1.7e-10  Score=119.58  Aligned_cols=97  Identities=19%  Similarity=0.232  Sum_probs=82.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCc------EEEeCCcchh----------------HHHHHHHHHHHHhCCCcEEEe
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNY------TTVNRDTLGS----------------WQKCVSVMKAALDSGLSVVVD  329 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~------~~i~~D~~~~----------------~~~~~~~~~~~l~~g~~vIiD  329 (369)
                      +.+|+|+|+|||||||+|+.|++.++.      .+++.|.++.                ++++...+...++.|..||+|
T Consensus       392 g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ge~~f~~~er~~~~~~l~~~a~~v~~~Gg~vI~~  471 (568)
T PRK05537        392 GFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLSSELGFSKEDRDLNILRIGFVASEITKNGGIAICA  471 (568)
T ss_pred             CeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            469999999999999999999998864      8999998852                222334566778889999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHcC
Q psy4598         330 NTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK  369 (369)
Q Consensus       330 ~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn~  369 (369)
                      .+++..+.|..+++++++++ .+.+||+++|.+++.+|.+
T Consensus       472 ~~~p~~~~R~~nr~llk~~g-~fivV~L~~p~e~l~~R~r  510 (568)
T PRK05537        472 PIAPYRATRREVREMIEAYG-GFIEVHVATPLEVCEQRDR  510 (568)
T ss_pred             eCCchHHHHHHHHHHHhhcC-CEEEEEEcCCHHHHHHhcc
Confidence            99999999999999998876 4678999999999999863

>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548

Probab=99.16  E-value=1.3e-10  Score=104.49  Aligned_cols=85  Identities=12%  Similarity=0.155  Sum_probs=72.5

Q ss_pred             HHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHHhcCC
Q psy4598          59 IESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQEKNGD  136 (369)
Q Consensus        59 v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~  136 (369)
                      +.+.|+.|+++|++++|+||.+            ...+..+++.+|+.  |+.+++.++... ||+|.++..+++++   
T Consensus       111 ~~~~L~~l~~~g~~~~i~T~~~------------~~~~~~~l~~~gl~~~f~~~~~~~~~~~-KP~p~~~~~~~~~~---  174 (197)
T TIGR01548       111 PKGLLRELHRAPKGMAVVTGRP------------RKDAAKFLTTHGLEILFPVQIWMEDCPP-KPNPEPLILAAKAL---  174 (197)
T ss_pred             HHHHHHHHHHcCCcEEEECCCC------------HHHHHHHHHHcCchhhCCEEEeecCCCC-CcCHHHHHHHHHHh---
Confidence            4899999999999999999943            34466778888884  777778776665 99999999999985   


Q ss_pred             ccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhC
Q psy4598         137 LAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNL  176 (369)
Q Consensus       137 ~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~  176 (369)
                       ++++++|+||||+.                .|+++|+++
T Consensus       175 -~~~~~~~i~vGD~~----------------~Di~aA~~a  197 (197)
T TIGR01548       175 -GVEACHAAMVGDTV----------------DDIITGRKA  197 (197)
T ss_pred             -CcCcccEEEEeCCH----------------HHHHHHHhC
Confidence             78999999999999                899999975

All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.

>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae

Probab=99.16  E-value=1.5e-10  Score=102.19  Aligned_cols=95  Identities=19%  Similarity=0.249  Sum_probs=68.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC--CcEEEeCCcchh-----------------------------HHHHHHHHHHHHh
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL--NYTTVNRDTLGS-----------------------------WQKCVSVMKAALD  321 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~--~~~~i~~D~~~~-----------------------------~~~~~~~~~~~l~  321 (369)
                      ++|+|.|+|.|||||+|++|++.+  .+.+++.|.+..                             +......+...++
T Consensus         2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~iaa~a~   81 (174)
T PF07931_consen    2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRRLYAAMHAAIAAMAR   81 (174)
T ss_dssp             -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCCccccccccCCchhHHHHHHHHHHHHHHHHHHh
Confidence            589999999999999999999986  578999998731                             3334555667778


Q ss_pred             CCCcEEEeCCCCCHHH-HHHHHHHHHhcCCeEEEEEEeCCHHHHHHHcC
Q psy4598         322 SGLSVVVDNTNPDKES-RHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK  369 (369)
Q Consensus       322 ~g~~vIiD~tn~~~~~-r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn~  369 (369)
                      .|.+||+|........ .+.+.++.  .++++.+|-+.||++++.+|++
T Consensus        82 aG~~VIvD~v~~~~~~l~d~l~~~L--~~~~vl~VgV~Cpleil~~RE~  128 (174)
T PF07931_consen   82 AGNNVIVDDVFLGPRWLQDCLRRLL--AGLPVLFVGVRCPLEILERRER  128 (174)
T ss_dssp             TT-EEEEEE--TTTHHHHHHHHHHH--TTS-EEEEEEE--HHHHHHHHH
T ss_pred             CCCCEEEecCccCcHHHHHHHHHHh--CCCceEEEEEECCHHHHHHHHH
Confidence            9999999988877654 44444544  3899999999999999999863

Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.

>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2

Probab=99.15  E-value=1.2e-10  Score=106.59  Aligned_cols=98  Identities=20%  Similarity=0.275  Sum_probs=68.1

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCC-----cEEEeCCcch----------------------h----HHHHHHHHHHH
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLN-----YTTVNRDTLG----------------------S----WQKCVSVMKAA  319 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~-----~~~i~~D~~~----------------------~----~~~~~~~~~~~  319 (369)
                      .+.+|+|+|+||.|||++|++|++.++     +.+.+..++|                      .    ...+.+.+...
T Consensus        11 ~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a~~~l~dl~~~   90 (222)
T PF01591_consen   11 GKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIAKEALEDLIEW   90 (222)
T ss_dssp             --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence            357999999999999999999998763     3444433332                      0    12234444555


Q ss_pred             Hh--CCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         320 LD--SGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       320 l~--~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      +.  .|...|+|+||.+++.|+.+.+.++++++.+.++...|+++..+++|
T Consensus        91 l~~~~G~VAI~DATN~T~~RR~~l~~~~~~~~~~vlFIEsic~D~~ii~~N  141 (222)
T PF01591_consen   91 LQEEGGQVAIFDATNSTRERRKMLVERFKEHGIKVLFIESICDDPEIIERN  141 (222)
T ss_dssp             HHTS--SEEEEES---SHHHHHHHHHHHHHTT-EEEEEEEE---HHHHHHH
T ss_pred             HhcCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEEeCCHHHHHHH
Confidence            55  56788999999999999999999999999999999999999888876

7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....

>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA

Probab=99.14  E-value=6.2e-10  Score=103.32  Aligned_cols=47  Identities=21%  Similarity=0.171  Sum_probs=40.8

Q ss_pred             CCCCchhHHHHHHHHhcCCccccCCcc-EEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         118 YRKPVPGMWEYLSQEKNGDLAIDISQS-FYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       118 ~rKP~~gm~~~~~~~~~~~~~i~~~~s-~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      +.||+|.||+.+++++    +++++++ +||||+..               +|+.+|+++|++++..
T Consensus       186 ~~KP~~~~~~~~~~~~----~~~~~~~~~~IGD~~~---------------~Di~~A~~~G~~~i~v  233 (236)
T TIGR01460       186 VGKPSPAIYRAALNLL----QARPERRDVMVGDNLR---------------TDILGAKNAGFDTLLV  233 (236)
T ss_pred             ecCCCHHHHHHHHHHh----CCCCccceEEECCCcH---------------HHHHHHHHCCCcEEEE
Confidence            3699999999999986    6788887 99999973               7999999999998643

Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.

>PRK11133 serB phosphoserine phosphatase; Provisional

Probab=99.13  E-value=1.2e-10  Score=112.81  Aligned_cols=95  Identities=17%  Similarity=0.156  Sum_probs=73.8

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCe------EEE---E-e--cCCCCCCCCc
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPV------QMF---V-A--TQYDRYRKPV  122 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~------~~~---~-~--~~~~~~rKP~  122 (369)
                      ++||+.+.|+.|++.|++++|+|+..            ...++.+++.+|+..      .+.   + +  .+....+||+
T Consensus       182 l~pGa~elL~~Lk~~G~~~aIvSgg~------------~~~~~~l~~~Lgld~~~an~lei~dg~ltg~v~g~iv~~k~K  249 (322)
T PRK11133        182 LMPGLTELVLKLQALGWKVAIASGGF------------TYFADYLRDKLRLDAAVANELEIMDGKLTGNVLGDIVDAQYK  249 (322)
T ss_pred             CChhHHHHHHHHHHcCCEEEEEECCc------------chhHHHHHHHcCCCeEEEeEEEEECCEEEeEecCccCCcccH
Confidence            68999999999999999999999921            122445566777741      110   1 1  1133467999


Q ss_pred             hhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         123 PGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       123 ~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      +.++..+++++    +++++++++|||.+                +|+.++.++|+.+.
T Consensus       250 ~~~L~~la~~l----gi~~~qtIaVGDg~----------------NDl~m~~~AGlgiA  288 (322)
T PRK11133        250 ADTLTRLAQEY----EIPLAQTVAIGDGA----------------NDLPMIKAAGLGIA  288 (322)
T ss_pred             HHHHHHHHHHc----CCChhhEEEEECCH----------------HHHHHHHHCCCeEE
Confidence            99999999986    79999999999999                89999999999873

>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases

Probab=99.13  E-value=3e-10  Score=99.38  Aligned_cols=124  Identities=20%  Similarity=0.179  Sum_probs=89.2

Q ss_pred             CCCCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCc--EEEEEecCCCcCCCCCCHHHHHHHHHH
Q psy4598          21 VCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGY--KLVIFTNQGAIGRKKMSTRDFQAKAEK   98 (369)
Q Consensus        21 ~~~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~--~i~i~TNq~gi~~~~~~~~~~~~~i~~   98 (369)
                      .....|.++||.|+||....+.           .+.|.+.+.++++++.+.  +|+|+||..|.....     -...++.
T Consensus        37 k~~Gik~li~DkDNTL~~~~~~-----------~i~~~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~-----~~~~a~~  100 (168)
T PF09419_consen   37 KKKGIKALIFDKDNTLTPPYED-----------EIPPEYAEWLNELKKQFGKDRVLIVSNSAGSSDDP-----DGERAEA  100 (168)
T ss_pred             hhcCceEEEEcCCCCCCCCCcC-----------cCCHHHHHHHHHHHHHCCCCeEEEEECCCCcccCc-----cHHHHHH
Confidence            3456799999999999866542           268999999999999876  599999987654311     1234566


Q ss_pred             HHHHcCCCeEEEEecCCCCCCCCchhHHHHHHHHhcC-CccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCC
Q psy4598          99 IIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNG-DLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLN  177 (369)
Q Consensus        99 ~l~~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~-~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~G  177 (369)
                      +-+.+|+|+-..      ...||  +.+..+++.+.. +....+++.+||||+.-               +|+.+|..+|
T Consensus       101 ~~~~lgIpvl~h------~~kKP--~~~~~i~~~~~~~~~~~~p~eiavIGDrl~---------------TDVl~gN~~G  157 (168)
T PF09419_consen  101 LEKALGIPVLRH------RAKKP--GCFREILKYFKCQKVVTSPSEIAVIGDRLF---------------TDVLMGNRMG  157 (168)
T ss_pred             HHHhhCCcEEEe------CCCCC--ccHHHHHHHHhhccCCCCchhEEEEcchHH---------------HHHHHhhccC
Confidence            678889874322      15687  555555554421 01246899999999995               9999999999


Q ss_pred             CCccCc
Q psy4598         178 LAFFTP  183 (369)
Q Consensus       178 i~f~~p  183 (369)
                      +-.+..
T Consensus       158 ~~tilv  163 (168)
T PF09419_consen  158 SYTILV  163 (168)
T ss_pred             ceEEEE
Confidence            887644

All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.

>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic

Probab=99.11  E-value=3.8e-10  Score=109.55  Aligned_cols=49  Identities=14%  Similarity=0.128  Sum_probs=45.6

Q ss_pred             hCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHcC
Q psy4598         321 DSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK  369 (369)
Q Consensus       321 ~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn~  369 (369)
                      ..+..+|+|++|.....|..+..+|+.++..+..+|+++|.++|++||+
T Consensus       125 srpllvilDd~fy~ks~Ryel~~LAr~~~~~~~~V~ld~ple~~l~RN~  173 (340)
T TIGR03575       125 SRPLCLVLDDNFYYQSMRYEVYQLARKYSLGFCQLFLDCPVESCLLRNK  173 (340)
T ss_pred             hCCCCceecCCCCCHHHHHHHHHHHHHhCCCEEEEEEeCCHHHHHHHHh
Confidence            4555799999999999999999999999999999999999999999984

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.

>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase

Probab=99.10  E-value=3.6e-10  Score=100.11  Aligned_cols=92  Identities=11%  Similarity=0.110  Sum_probs=68.7

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecC------------------
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQ------------------  114 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~------------------  114 (369)
                      ++|++.+.|+.|++.|++++|+||..            ...++.+++.+++.  |+.+++..                  
T Consensus        73 l~~g~~~ll~~l~~~g~~~~i~S~~~------------~~~~~~~l~~~~l~~~f~~i~~~~~~~~~~g~~~~~~~~~~~  140 (188)
T TIGR01489        73 IDPGFKEFIAFIKEHGIDFIVISDGN------------DFFIDPVLEGIGEKDVFIEIYSNPASFDNDGRHIVWPHHCHG  140 (188)
T ss_pred             CCccHHHHHHHHHHcCCcEEEEeCCc------------HHHHHHHHHHcCChhheeEEeccCceECCCCcEEEecCCCCc
Confidence            57999999999999999999999932            23456667777773  66555432                  


Q ss_pred             --CCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         115 --YDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       115 --~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                        ...+..+++.+++.+.++      . +++++||||+.                +|+.+|+++++-|.
T Consensus       141 ~~~~~~g~~K~~~~~~~~~~------~-~~~~i~iGD~~----------------~D~~aa~~~d~~~a  186 (188)
T TIGR01489       141 CCSCPCGCCKGKVIHKLSEP------K-YQHIIYIGDGV----------------TDVCPAKLSDVVFA  186 (188)
T ss_pred             cCcCCCCCCHHHHHHHHHhh------c-CceEEEECCCc----------------chhchHhcCCcccc
Confidence              122333456777777654      1 78999999999                89999999988764

Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.

>PRK13582 thrH phosphoserine phosphatase; Provisional

Probab=99.08  E-value=4.8e-10  Score=101.17  Aligned_cols=93  Identities=14%  Similarity=0.126  Sum_probs=63.9

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecC-CC---CCCCCchhHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQ-YD---RYRKPVPGMWEY  128 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~-~~---~~rKP~~gm~~~  128 (369)
                      ++||+.+.|+.|+++ ++++|+||.            ....++.+++.+|++  |...++.. +.   ...+|.|.....
T Consensus        69 ~~pg~~e~L~~L~~~-~~~~IvS~~------------~~~~~~~~l~~~gl~~~f~~~~~~~~~~~i~~~~~~~p~~k~~  135 (205)
T PRK13582         69 PLPGAVEFLDWLRER-FQVVILSDT------------FYEFAGPLMRQLGWPTLFCHSLEVDEDGMITGYDLRQPDGKRQ  135 (205)
T ss_pred             CCCCHHHHHHHHHhc-CCEEEEeCC------------cHHHHHHHHHHcCCchhhcceEEECCCCeEECccccccchHHH
Confidence            589999999999999 999999993            234566778888875  33222221 11   111233333445


Q ss_pred             HHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc
Q psy4598         129 LSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF  180 (369)
Q Consensus       129 ~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f  180 (369)
                      +++.+    +..+++++||||+.                +|+.+|.++|+..
T Consensus       136 ~l~~~----~~~~~~~v~iGDs~----------------~D~~~~~aa~~~v  167 (205)
T PRK13582        136 AVKAL----KSLGYRVIAAGDSY----------------NDTTMLGEADAGI  167 (205)
T ss_pred             HHHHH----HHhCCeEEEEeCCH----------------HHHHHHHhCCCCE
Confidence            55554    34568999999999                8999999999754

>PRK05541 adenylylsulfate kinase; Provisional

Probab=99.08  E-value=5.8e-10  Score=98.59  Aligned_cols=93  Identities=20%  Similarity=0.215  Sum_probs=65.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchh---------HHHH------HHHHHHHHhCCCcEEEeCC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGS---------WQKC------VSVMKAALDSGLSVVVDNT  331 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~---------~~~~------~~~~~~~l~~g~~vIiD~t  331 (369)
                      +.+|+|+|+|||||||+++.+++.+     ++.+++.|.++.         ....      ...+......|..||+|++
T Consensus         7 ~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~VI~~~~   86 (176)
T PRK05541          7 GYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREILGHYGYDKQSRIEMALKRAKLAKFLADQGMIVIVTTI   86 (176)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHhCCCEEEEEeC
Confidence            4699999999999999999998876     378888888752         1111      1122223467889999988


Q ss_pred             CCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         332 NPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       332 n~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      +...+.+....    ....+...||+++|.+++.+|.
T Consensus        87 ~~~~~~~~~~~----~~~~~~~~v~l~~~~e~~~~R~  119 (176)
T PRK05541         87 SMFDEIYAYNR----KHLPNYFEVYLKCDMEELIRRD  119 (176)
T ss_pred             CcHHHHHHHHH----hhcCCeEEEEEeCCHHHHHHhc
Confidence            86444443333    3333457899999999999985

>KOG0635|consensus

Probab=99.07  E-value=2.8e-10  Score=96.28  Aligned_cols=94  Identities=21%  Similarity=0.281  Sum_probs=76.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchh----------------HHHHHHHHHHHHhCCCcEEEeCC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGS----------------WQKCVSVMKAALDSGLSVVVDNT  331 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~----------------~~~~~~~~~~~l~~g~~vIiD~t  331 (369)
                      .+|+|+|++||||||+|-+|.+.+     -.+.++.|.++.                .++..+.++-..+.|...|-.-.
T Consensus        32 cviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~DL~F~a~dR~ENIRRigeVaKLFADag~iciaSlI  111 (207)
T KOG0635|consen   32 CVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNKDLGFKAEDRNENIRRIGEVAKLFADAGVICIASLI  111 (207)
T ss_pred             cEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcccccccccccCcchhhhhhhHHHHHHHHHHHhccceeeeehhc
Confidence            489999999999999999999874     367889998851                34556667777777766666667


Q ss_pred             CCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         332 NPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       332 n~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      .+.+..|+..+++..+.  .++.|++++|+++|.+|+
T Consensus       112 SPYR~dRdacRel~~~~--~FiEvfmdvpl~vcE~RD  146 (207)
T KOG0635|consen  112 SPYRKDRDACRELLPEG--DFIEVFMDVPLEVCEARD  146 (207)
T ss_pred             CchhccHHHHHHhccCC--CeEEEEecCcHHHhhccC
Confidence            77888898888887654  889999999999999986

>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP)

Probab=99.06  E-value=1.6e-09  Score=96.73  Aligned_cols=94  Identities=14%  Similarity=0.215  Sum_probs=72.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hhH-----------------------HHHHHHHHHHHhC---CCcEE
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GSW-----------------------QKCVSVMKAALDS---GLSVV  327 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~~-----------------------~~~~~~~~~~l~~---g~~vI  327 (369)
                      |+++|+|||||||+|+.|++.+++.+|+.|++ +..                       +.+...+...+..   +..+|
T Consensus         2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~l~~~~~~~~~v   81 (194)
T cd01428           2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGTELGKKAKEYIDSGKLVPDEIVIKLLKERLKKPDCKKGFI   81 (194)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCChHHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCCEE
Confidence            79999999999999999999999999999875 211                       0112333444443   56899


Q ss_pred             EeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         328 VDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       328 iD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      +|+...+..+...+.+.....+.+..+|++++|.+++.+|-
T Consensus        82 ldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl  122 (194)
T cd01428          82 LDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERI  122 (194)
T ss_pred             EeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHH
Confidence            99987777777777776655557778999999999998883

This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.

>KOG3354|consensus

Probab=99.06  E-value=8.9e-10  Score=93.68  Aligned_cols=96  Identities=24%  Similarity=0.313  Sum_probs=79.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch------------------hH---HHHHHHHHHHHhCCCcEEEeC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG------------------SW---QKCVSVMKAALDSGLSVVVDN  330 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~------------------~~---~~~~~~~~~~l~~g~~vIiD~  330 (369)
                      +-+|+++|++||||||++++|.+.+++.+++.|++.                  .|   ..+...++..+..|+.||+-+
T Consensus        12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~GipLnD~DR~pWL~~i~~~~~~~l~~~q~vVlAC   91 (191)
T KOG3354|consen   12 KYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQGIPLNDDDRWPWLKKIAVELRKALASGQGVVLAC   91 (191)
T ss_pred             ceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhhcCCeEEEEh
Confidence            348999999999999999999999999999999983                  13   345666777778899999999


Q ss_pred             CCCCHHHHHHHHHHHH------hcCCeEEEEEEeCCHHHHHHH
Q psy4598         331 TNPDKESRHRYIEAAK------QHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       331 tn~~~~~r~~~~~la~------~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      ..+.+.+|+-++.-.+      .....++++++..+.|++..|
T Consensus        92 SaLKk~YRdILr~sl~~gk~~~~~~~~l~fi~l~~s~evi~~R  134 (191)
T KOG3354|consen   92 SALKKKYRDILRHSLKDGKPGKCPESQLHFILLSASFEVILKR  134 (191)
T ss_pred             HHHHHHHHHHHHhhcccCCccCCccceEEEeeeeccHHHHHHH
Confidence            9998888887766333      234679999999999999887

>PRK07261 topology modulation protein; Provisional

Probab=99.04  E-value=1.1e-09  Score=96.62  Aligned_cols=87  Identities=18%  Similarity=0.182  Sum_probs=65.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch--------hHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHH
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG--------SWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAA  345 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~--------~~~~~~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la  345 (369)
                      -|+++|+|||||||+|+.|++.++..+++.|.+.        ..+.+...+.+++.++. +|+|+++..... ...+..|
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~-wIidg~~~~~~~-~~~l~~a   79 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQERDDDDMIADISNFLLKHD-WIIDGNYSWCLY-EERMQEA   79 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccCCHHHHHHHHHHHHhCCC-EEEcCcchhhhH-HHHHHHC
Confidence            3789999999999999999999999999999873        23456666777777665 999999854222 2222222


Q ss_pred             HhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         346 KQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       346 ~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                         .   .++++++|.++|..|.
T Consensus        80 ---d---~vI~Ld~p~~~~~~R~   96 (171)
T PRK07261         80 ---D---QIIFLNFSRFNCLYRA   96 (171)
T ss_pred             ---C---EEEEEcCCHHHHHHHH
Confidence               2   4899999999998874

>PRK06217 hypothetical protein; Validated

Probab=99.04  E-value=1.1e-09  Score=97.64  Aligned_cols=88  Identities=13%  Similarity=0.170  Sum_probs=63.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch------------hHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG------------SWQKCVSVMKAALDSGLSVVVDNTNPDKESRHR  340 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~------------~~~~~~~~~~~~l~~g~~vIiD~tn~~~~~r~~  340 (369)
                      +-|+|+|.|||||||+|++|++.++..+++.|.+.            ..+.....+.+.+..+..+|||+....  .+..
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~G~~~~--~~~~   79 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERLDIPHLDTDDYFWLPTDPPFTTKRPPEERLRLLLEDLRPREGWVLSGSALG--WGDP   79 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCcEEEcCceeeccCCCCccccCCHHHHHHHHHHHHhcCCCEEEEccHHH--HHHH
Confidence            35899999999999999999999999999999872            122334444555656678999966532  2222


Q ss_pred             HHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         341 YIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       341 ~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                         +....+   .+|++++|.+++..|-
T Consensus        80 ---~~~~~d---~~i~Ld~~~~~~~~Rl  101 (183)
T PRK06217         80 ---LEPLFD---LVVFLTIPPELRLERL  101 (183)
T ss_pred             ---HHhhCC---EEEEEECCHHHHHHHH
Confidence               223233   4789999999998873

>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490

Probab=99.03  E-value=3.7e-10  Score=101.64  Aligned_cols=95  Identities=13%  Similarity=0.206  Sum_probs=71.2

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEE-EEecC----------CCCCCCC
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQM-FVATQ----------YDRYRKP  121 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~-~~~~~----------~~~~rKP  121 (369)
                      ++|++.+.|+.++++|++++|+||..            ...++.+++.+|+.  |.. +...+          ...++++
T Consensus        88 ~~~~~~~~l~~l~~~g~~v~ivS~s~------------~~~v~~~~~~lg~~~~~~~~l~~~~~g~~~g~~~~~~~~g~~  155 (202)
T TIGR01490        88 LYPEARDLIRWHKAEGHTIVLVSASL------------TILVKPLARILGIDNAIGTRLEESEDGIYTGNIDGNNCKGEG  155 (202)
T ss_pred             ccHHHHHHHHHHHHCCCEEEEEeCCc------------HHHHHHHHHHcCCcceEecceEEcCCCEEeCCccCCCCCChH
Confidence            57899999999999999999999932            33456667788874  211 11101          1224566


Q ss_pred             chhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         122 VPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       122 ~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      +...++.++++.    ++++++|+++||+.                +|+.++..+|..++
T Consensus       156 K~~~l~~~~~~~----~~~~~~~~~~gDs~----------------~D~~~~~~a~~~~~  195 (202)
T TIGR01490       156 KVHALAELLAEE----QIDLKDSYAYGDSI----------------SDLPLLSLVGHPYV  195 (202)
T ss_pred             HHHHHHHHHHHc----CCCHHHcEeeeCCc----------------ccHHHHHhCCCcEE
Confidence            677788888775    68899999999999                89999999999973

A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.

>PRK00279 adk adenylate kinase; Reviewed

Probab=99.02  E-value=2.6e-09  Score=97.69  Aligned_cols=95  Identities=14%  Similarity=0.259  Sum_probs=70.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hhH-----------------------HHHHHHHHHHHhC---CCcE
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GSW-----------------------QKCVSVMKAALDS---GLSV  326 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~~-----------------------~~~~~~~~~~l~~---g~~v  326 (369)
                      .|++.|+|||||||+|+.|++.+++.+|+.+++ +..                       +.....+.+.+..   +..+
T Consensus         2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~~~~~~~~~~~~~g~~~p~~~~~~~i~~~l~~~~~~~g~   81 (215)
T PRK00279          2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGTELGKEAKSYMDAGELVPDEIVIGLVKERLAQPDCKNGF   81 (215)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccchHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccCccCCE
Confidence            388999999999999999999999999998665 210                       0112223333332   3479


Q ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCeE-EEEEEeCCHHHHHHHc
Q psy4598         327 VVDNTNPDKESRHRYIEAAKQHGVRC-IAVHMNISKEHAKHNI  368 (369)
Q Consensus       327 IiD~tn~~~~~r~~~~~la~~~~~~v-~~v~l~~~~e~~~~Rn  368 (369)
                      |||+...+..+...+.+.+...+..+ .++++++|.+++.+|-
T Consensus        82 VlDGfPr~~~qa~~l~~~l~~~~~~~~~vi~l~~~~~~~~~Rl  124 (215)
T PRK00279         82 LLDGFPRTIPQAEALDEMLKELGIKLDAVIEIDVPDEELVERL  124 (215)
T ss_pred             EEecCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHH
Confidence            99998777777777767666677655 7999999999998873

>PLN02200 adenylate kinase family protein

Probab=99.00  E-value=3.5e-09  Score=98.20  Aligned_cols=97  Identities=11%  Similarity=0.246  Sum_probs=68.9

Q ss_pred             ccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh--------H---------------HHHHHHHHHHHh--C
Q psy4598         269 AALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS--------W---------------QKCVSVMKAALD--S  322 (369)
Q Consensus       269 ~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~--------~---------------~~~~~~~~~~l~--~  322 (369)
                      +..|.+|+++|+|||||||+|+.|++.+++.||+.+++ +.        +               +.....+.+.+.  .
T Consensus        40 ~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~~s~~~~~i~~~~~~G~~vp~e~~~~~l~~~l~~~~  119 (234)
T PLN02200         40 EKTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIASNSEHGAMILNTIKEGKIVPSEVTVKLIQKEMESSD  119 (234)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhccChhHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Confidence            33457899999999999999999999999999998654 31        0               111122233333  2


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         323 GLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       323 g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      +..+|+|+...+..++..+..++.  -.+-.++++++|.+++.+|
T Consensus       120 ~~~~ILDG~Prt~~q~~~l~~~~~--~~pd~vi~Ld~~~e~~~~R  162 (234)
T PLN02200        120 NNKFLIDGFPRTEENRIAFERIIG--AEPNVVLFFDCPEEEMVKR  162 (234)
T ss_pred             CCeEEecCCcccHHHHHHHHHHhc--cCCCEEEEEECCHHHHHHH
Confidence            457999998877776666655442  1244689999999998887

>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]

Probab=98.99  E-value=2.3e-09  Score=93.74  Aligned_cols=89  Identities=21%  Similarity=0.291  Sum_probs=65.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch------------------hHHHHHHHHHHHHhCCCcEEEeCCC--
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG------------------SWQKCVSVMKAALDSGLSVVVDNTN--  332 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~------------------~~~~~~~~~~~~l~~g~~vIiD~tn--  332 (369)
                      +-|+|+|++||||||+++.|++.++..++|.|.+-                  .++.+...+...+-...+.||....  
T Consensus         3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~sI~eIF~~~GE~~FR~~E~~vl~~l~~~~~~ViaTGGG~   82 (172)
T COG0703           3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMSIAEIFEEEGEEGFRRLETEVLKELLEEDNAVIATGGGA   82 (172)
T ss_pred             ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHCcCHHHHHHHHhHHHHHHHHHHHHHHHhhcCCeEEECCCcc
Confidence            34899999999999999999999999999999972                  2555655554444433356665443  


Q ss_pred             -CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         333 -PDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       333 -~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                       .+++.|..+    +.++   .+||+++|.|+..+|-
T Consensus        83 v~~~enr~~l----~~~g---~vv~L~~~~e~l~~Rl  112 (172)
T COG0703          83 VLSEENRNLL----KKRG---IVVYLDAPFETLYERL  112 (172)
T ss_pred             ccCHHHHHHH----HhCC---eEEEEeCCHHHHHHHh
Confidence             245555444    4445   6999999999999883

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=98.99  E-value=2.4e-09  Score=95.03  Aligned_cols=93  Identities=15%  Similarity=0.306  Sum_probs=66.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh---------------------------HHHHHHHHHHHHhCCC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS---------------------------WQKCVSVMKAALDSGL  324 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~---------------------------~~~~~~~~~~~l~~g~  324 (369)
                      ++|++.|+|||||||+++.|++.+++.+++.+++ +.                           ++.+...+...+..+.
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~   83 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVASGSERGKQLQAIMESGDLVPLDTVLDLLKDAMVAALGTSK   83 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcccCcCC
Confidence            5899999999999999999999999999998653 11                           0111122233345678


Q ss_pred             cEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         325 SVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       325 ~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      .||+|+...+......   +.+....+..++++++|.+++.+|.
T Consensus        84 ~~i~dg~~~~~~q~~~---~~~~~~~~~~vi~l~~~~~~~~~Rl  124 (188)
T TIGR01360        84 GFLIDGYPREVKQGEE---FERRIGPPTLVLYFDCSEDTMVKRL  124 (188)
T ss_pred             eEEEeCCCCCHHHHHH---HHHcCCCCCEEEEEECCHHHHHHHH
Confidence            8999998655433333   3344445678999999999998874

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>TIGR01351 adk adenylate kinases

Probab=98.99  E-value=3.5e-09  Score=96.44  Aligned_cols=92  Identities=13%  Similarity=0.204  Sum_probs=68.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hhH-----------------------HHHHHHHHHHHhC----CCcE
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GSW-----------------------QKCVSVMKAALDS----GLSV  326 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~~-----------------------~~~~~~~~~~l~~----g~~v  326 (369)
                      |+|+|+|||||||+|+.|++.+++.+|+.+++ +..                       +...+.+...+..    +..+
T Consensus         2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~~~~~~   81 (210)
T TIGR01351         2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQDNENGF   81 (210)
T ss_pred             EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcccCCcE
Confidence            78999999999999999999999999998664 210                       1123334444433    5689


Q ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         327 VVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       327 IiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      |+|+...+..+...+.+.+..  ....+++|++|.+++.+|-
T Consensus        82 ilDGfPrt~~Qa~~l~~~~~~--~~~~vi~L~~~~~~~~~Rl  121 (210)
T TIGR01351        82 ILDGFPRTLSQAEALDALLKE--KIDAVIELDVPDEELVERL  121 (210)
T ss_pred             EEeCCCCCHHHHHHHHHHhcc--CCCEEEEEECCHHHHHHHH
Confidence            999987777777666655431  3457999999999998873

Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.

>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]

Probab=98.95  E-value=1.9e-09  Score=91.20  Aligned_cols=87  Identities=18%  Similarity=0.202  Sum_probs=70.1

Q ss_pred             EcCCCCcHHHHHHHHhccCCcEEEeCCcchh------------------H---HHHHHHHHHHHhCCCcEEEeCCCCCHH
Q psy4598         278 IGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS------------------W---QKCVSVMKAALDSGLSVVVDNTNPDKE  336 (369)
Q Consensus       278 ~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~------------------~---~~~~~~~~~~l~~g~~vIiD~tn~~~~  336 (369)
                      +|.+||||||++.+|++++++.+|+.|++..                  |   +.+...+....+.+..+||-+..+.+.
T Consensus         1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~~~~~vi~CSALKr~   80 (161)
T COG3265           1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQKNKHVVIACSALKRS   80 (161)
T ss_pred             CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcCCCceEEecHHHHHH
Confidence            4899999999999999999999999999831                  2   334445555566777899999998888


Q ss_pred             HHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         337 SRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       337 ~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      +|+.++.    ..-.+.+||++.+.+++.+|-
T Consensus        81 YRD~LR~----~~~~~~Fv~L~g~~~~i~~Rm  108 (161)
T COG3265          81 YRDLLRE----ANPGLRFVYLDGDFDLILERM  108 (161)
T ss_pred             HHHHHhc----cCCCeEEEEecCCHHHHHHHH
Confidence            8877755    333589999999999999884

>PRK11545 gntK gluconate kinase 1; Provisional

Probab=98.94  E-value=6e-09  Score=91.26  Aligned_cols=86  Identities=19%  Similarity=0.234  Sum_probs=62.5

Q ss_pred             EcCCCCcHHHHHHHHhccCCcEEEeCCcch--------------------hHH-HHHHHHHHHHhC-CCcEEEeCCCCCH
Q psy4598         278 IGSQGSGKSSFVSTYLKPLNYTTVNRDTLG--------------------SWQ-KCVSVMKAALDS-GLSVVVDNTNPDK  335 (369)
Q Consensus       278 ~G~pGSGKSTla~~L~~~~~~~~i~~D~~~--------------------~~~-~~~~~~~~~l~~-g~~vIiD~tn~~~  335 (369)
                      +|+|||||||+++.|+..++..+++.|.+.                    .|. .+...+...+.. +..||+ +++..+
T Consensus         1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viv-~s~~~~   79 (163)
T PRK11545          1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIV-CSALKK   79 (163)
T ss_pred             CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhccccCCCCCChhhHHHHHHHHHHHHHHHHHcCCceEEE-EecchH
Confidence            599999999999999999999999999851                    011 112222222333 444555 888755


Q ss_pred             HHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         336 ESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       336 ~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      ..|    +++++.+.++.++||++|.+++.+|-
T Consensus        80 ~~r----~~~~~~~~~~~~v~l~a~~~~l~~Rl  108 (163)
T PRK11545         80 HYR----DLLREGNPNLSFIYLKGDFDVIESRL  108 (163)
T ss_pred             HHH----HHHHccCCCEEEEEEECCHHHHHHHH
Confidence            544    55666889999999999999999984

>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like

Probab=98.93  E-value=3.3e-09  Score=93.19  Aligned_cols=90  Identities=14%  Similarity=0.137  Sum_probs=64.0

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecC------------CCCCCC
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQ------------YDRYRK  120 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~------------~~~~rK  120 (369)
                      ++|++.+.|+.|+++|++++|+|+.            ....++.+++.+|+.  +...+...            .+.+..
T Consensus        74 ~~~g~~~~l~~l~~~g~~~~ivS~~------------~~~~i~~~~~~~g~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~  141 (177)
T TIGR01488        74 LRPGARELISWLKERGIDTVIVSGG------------FDFFVEPVAEKLGIDDVFANRLEFDDNGLLTGPIEGQVNPEGE  141 (177)
T ss_pred             cCcCHHHHHHHHHHCCCEEEEECCC------------cHHHHHHHHHHcCCchheeeeEEECCCCEEeCccCCcccCCcc
Confidence            5799999999999999999999993            234566777888874  22111111            122233


Q ss_pred             CchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhC
Q psy4598         121 PVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNL  176 (369)
Q Consensus       121 P~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~  176 (369)
                      .++.++..+.+++    ++++++++||||+.                +|+.++..+
T Consensus       142 ~K~~~l~~~~~~~----~~~~~~~~~iGDs~----------------~D~~~~~~a  177 (177)
T TIGR01488       142 CKGKVLKELLEES----KITLKKIIAVGDSV----------------NDLPMLKLA  177 (177)
T ss_pred             hHHHHHHHHHHHh----CCCHHHEEEEeCCH----------------HHHHHHhcC
Confidence            4456777777764    67889999999999                899988753

Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.

>PRK13948 shikimate kinase; Provisional

Probab=98.92  E-value=8.2e-09  Score=92.02  Aligned_cols=90  Identities=18%  Similarity=0.207  Sum_probs=63.8

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch------------------hHHHHHHHH-HHHHhCCCcEEEeC-
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG------------------SWQKCVSVM-KAALDSGLSVVVDN-  330 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~------------------~~~~~~~~~-~~~l~~g~~vIiD~-  330 (369)
                      .+..|+|+|++||||||+++.|++.+++.+++.|.+.                  .|+.+...+ .+.+..+ ..||.. 
T Consensus         9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~ie~~~g~si~~if~~~Ge~~fR~~E~~~l~~l~~~~-~~VIa~G   87 (182)
T PRK13948          9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRYIERVTGKSIPEIFRHLGEAYFRRCEAEVVRRLTRLD-YAVISLG   87 (182)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHHHHHHHhCCHHHHHHHhCHHHHHHHHHHHHHHHHhcC-CeEEECC
Confidence            4578999999999999999999999999999999762                  134444443 3333444 455553 


Q ss_pred             --CCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         331 --TNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       331 --tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                        +...++.|..+.    +++   .+||+++|.+.+.+|-
T Consensus        88 gG~v~~~~n~~~l~----~~g---~vV~L~~~~e~l~~Rl  120 (182)
T PRK13948         88 GGTFMHEENRRKLL----SRG---PVVVLWASPETIYERT  120 (182)
T ss_pred             CcEEcCHHHHHHHH----cCC---eEEEEECCHHHHHHHh
Confidence              344556665543    333   4789999999998873

>PRK00131 aroK shikimate kinase; Reviewed

Probab=98.92  E-value=6.6e-09  Score=90.90  Aligned_cols=90  Identities=20%  Similarity=0.290  Sum_probs=58.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh------------------HHHHHHH-HHHHHhCCCcEEEeCC
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS------------------WQKCVSV-MKAALDSGLSVVVDNT  331 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~------------------~~~~~~~-~~~~l~~g~~vIiD~t  331 (369)
                      .+..|+|+|+|||||||+|+.|++.+++.+++.|.+..                  |...... +...+. +..+||...
T Consensus         3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~-~~~~vi~~g   81 (175)
T PRK00131          3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTDHLIEARAGKSIPEIFEEEGEAAFRELEEEVLAELLA-RHNLVISTG   81 (175)
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHHh-cCCCEEEeC
Confidence            35689999999999999999999999999999998621                  1122222 233333 333444433


Q ss_pred             C---CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         332 N---PDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       332 n---~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      .   .....|.    +.+..   ...||+++|.+.+.+|.
T Consensus        82 ~~~~~~~~~r~----~l~~~---~~~v~l~~~~~~~~~R~  114 (175)
T PRK00131         82 GGAVLREENRA----LLRER---GTVVYLDASFEELLRRL  114 (175)
T ss_pred             CCEeecHHHHH----HHHhC---CEEEEEECCHHHHHHHh
Confidence            2   1233333    22332   36799999999988774

>PRK08118 topology modulation protein; Reviewed

Probab=98.91  E-value=6e-09  Score=91.67  Aligned_cols=85  Identities=19%  Similarity=0.232  Sum_probs=60.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch--------hHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHH
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG--------SWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAA  345 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~--------~~~~~~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la  345 (369)
                      -|+++|+|||||||+|+.|++.++..+++.|.+-        .-+...+...+.++ +..+|+|+.....  ......  
T Consensus         3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~~~~~~~~~~~~-~~~wVidG~~~~~--~~~~l~--   77 (167)
T PRK08118          3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKEEQITVQNELVK-EDEWIIDGNYGGT--MDIRLN--   77 (167)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHHHHHHHHHHHhc-CCCEEEeCCcchH--HHHHHH--
Confidence            4899999999999999999999999999999763        12233334444444 4579999876432  121122  


Q ss_pred             HhcCCeEEEEEEeCCHHHHHHH
Q psy4598         346 KQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       346 ~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                       .   .=.++++++|.++|..|
T Consensus        78 -~---~d~vi~Ld~p~~~~~~R   95 (167)
T PRK08118         78 -A---ADTIIFLDIPRTICLYR   95 (167)
T ss_pred             -h---CCEEEEEeCCHHHHHHH
Confidence             1   22589999999998877

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.90  E-value=1.3e-08  Score=90.21  Aligned_cols=91  Identities=16%  Similarity=0.211  Sum_probs=66.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh--------------------HHH-HHHHHHHHHhC-CCcEEEeC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS--------------------WQK-CVSVMKAALDS-GLSVVVDN  330 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~--------------------~~~-~~~~~~~~l~~-g~~vIiD~  330 (369)
                      .+++++|++||||||+++.++..++..+++.|.+..                    |.. ....+...+.. ...+|+ +
T Consensus         4 e~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~iv-~   82 (176)
T PRK09825          4 ESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYSLYKKNETGFIV-C   82 (176)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHHHHhcCCCEEEE-E
Confidence            578999999999999999999999889999998521                    111 11222222232 234444 8


Q ss_pred             CCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         331 TNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       331 tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      +++.+..|+    ++++++.++.++||++|.+++.+|-
T Consensus        83 s~~~~~~R~----~~r~~~~~~~~v~l~a~~~~l~~Rl  116 (176)
T PRK09825         83 SSLKKQYRD----ILRKSSPNVHFLWLDGDYETILARM  116 (176)
T ss_pred             EecCHHHHH----HHHhhCCCEEEEEEeCCHHHHHHHH
Confidence            887665554    5577888999999999999999884

>KOG3040|consensus

Probab=98.90  E-value=1e-08  Score=90.92  Aligned_cols=47  Identities=21%  Similarity=0.151  Sum_probs=43.0

Q ss_pred             CCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCch
Q psy4598         119 RKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPE  184 (369)
Q Consensus       119 rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~pe  184 (369)
                      .||+|-.|+.+++-.    ++++++++||||...               .|+.+|+.+||+.+.+.
T Consensus       180 GKP~~~fFe~al~~~----gv~p~~aVMIGDD~~---------------dDvgGAq~~GMrgilVk  226 (262)
T KOG3040|consen  180 GKPSPFFFESALQAL----GVDPEEAVMIGDDLN---------------DDVGGAQACGMRGILVK  226 (262)
T ss_pred             cCCCHHHHHHHHHhc----CCChHHheEEccccc---------------cchhhHhhhcceeEEee
Confidence            799999999999874    799999999999995               89999999999997764

>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase

Probab=98.90  E-value=2.1e-09  Score=98.11  Aligned_cols=95  Identities=13%  Similarity=0.115  Sum_probs=69.0

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--e---EEEEecCCCCCCCCchhHH---
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--V---QMFVATQYDRYRKPVPGMW---  126 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~---~~~~~~~~~~~rKP~~gm~---  126 (369)
                      ++||+.+.|+.|+++|++++|+|+.            ....++.+++.++..  +   +..+..+....+||.|..+   
T Consensus        71 l~pg~~e~l~~l~~~g~~~~IvS~~------------~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~~p~~~~~~~~  138 (214)
T TIGR03333        71 IREGFREFVAFINEHGIPFYVISGG------------MDFFVYPLLEGIVEKDRIYCNEADFSNEYIHIDWPHPCDGTCQ  138 (214)
T ss_pred             ccccHHHHHHHHHHCCCeEEEECCC------------cHHHHHHHHHhhCCcccEEeceeEeeCCeeEEeCCCCCccccc
Confidence            6899999999999999999999993            234556666666432  2   1222333335578877765   


Q ss_pred             -------HHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         127 -------EYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       127 -------~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                             ..+++++    ...+++++||||+.                +|+.+|.++|+-|.
T Consensus       139 ~~cg~~K~~~l~~~----~~~~~~~i~iGDg~----------------~D~~~a~~Ad~~~a  180 (214)
T TIGR03333       139 NQCGCCKPSLIRKL----SEPNDYHIVIGDSV----------------TDVEAAKQSDLCFA  180 (214)
T ss_pred             cCCCCCHHHHHHHH----hhcCCcEEEEeCCH----------------HHHHHHHhCCeeEe
Confidence                   3556654    34678899999999                89999999999665

Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.

>PRK14530 adenylate kinase; Provisional

Probab=98.89  E-value=1.2e-08  Score=93.24  Aligned_cols=91  Identities=14%  Similarity=0.234  Sum_probs=64.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch-h------------HH---------------HHHHHHHHHHhCCC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG-S------------WQ---------------KCVSVMKAALDSGL  324 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~-~------------~~---------------~~~~~~~~~l~~g~  324 (369)
                      ..|+|+|+|||||||+++.|++.+++.+|+.+++- .            +.               .....+...+....
T Consensus         4 ~~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~~~l~~~~   83 (215)
T PRK14530          4 PRILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDISDMDTEYDTPGEYMDAGELVPDAVVNEIVEEALSDAD   83 (215)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcccccchHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Confidence            36899999999999999999999999999876541 0            10               11222334445566


Q ss_pred             cEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         325 SVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       325 ~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      .+|+|+...+......+..+.   . .-.+|++++|.+++.+|
T Consensus        84 ~~IldG~pr~~~q~~~l~~~~---~-~d~vI~Ld~~~~~l~~R  122 (215)
T PRK14530         84 GFVLDGYPRNLEQAEYLESIT---D-LDVVLYLDVSEEELVDR  122 (215)
T ss_pred             CEEEcCCCCCHHHHHHHHHhc---C-CCEEEEEeCCHHHHHHH
Confidence            899998666665655554331   2 34589999999999887

>PLN02674 adenylate kinase

Probab=98.88  E-value=1.5e-08  Score=94.21  Aligned_cols=96  Identities=16%  Similarity=0.240  Sum_probs=73.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hhH-----------------------HHHHHHHHHHHh---CCC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GSW-----------------------QKCVSVMKAALD---SGL  324 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~~-----------------------~~~~~~~~~~l~---~g~  324 (369)
                      +.-|++.|+|||||||+|+.|++.+++.||+.+++ +..                       +.....+.+.+.   .+.
T Consensus        31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~~  110 (244)
T PLN02674         31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKKPSCQK  110 (244)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhCcCcCC
Confidence            35688999999999999999999999999998776 210                       111233344443   245


Q ss_pred             cEEEeCCCCCHHHHHHHHHHHHhcCCeE-EEEEEeCCHHHHHHH
Q psy4598         325 SVVVDNTNPDKESRHRYIEAAKQHGVRC-IAVHMNISKEHAKHN  367 (369)
Q Consensus       325 ~vIiD~tn~~~~~r~~~~~la~~~~~~v-~~v~l~~~~e~~~~R  367 (369)
                      .+|+|+.-.+..+...+.++....+..+ .++++++|.+++.+|
T Consensus       111 g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~R  154 (244)
T PLN02674        111 GFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEER  154 (244)
T ss_pred             cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence            7999999888888888877766666544 588999999999988

>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants

Probab=98.87  E-value=1.7e-08  Score=86.65  Aligned_cols=87  Identities=20%  Similarity=0.238  Sum_probs=57.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh------------------HHHHHHHHHHHHhCCCcEEEeCCC---C
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS------------------WQKCVSVMKAALDSGLSVVVDNTN---P  333 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~------------------~~~~~~~~~~~l~~g~~vIiD~tn---~  333 (369)
                      |+|+|+|||||||+|+.|++.+++.+++.|.+..                  |......+...+.....+||++..   .
T Consensus         2 i~l~G~~GsGKstla~~la~~l~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~vi~~g~~~i~   81 (154)
T cd00464           2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLDELIEQRAGMSIPEIFAEEGEEGFRELEREVLLLLLTKENAVIATGGGAVL   81 (154)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHcCCCHHHHHHHHCHHHHHHHHHHHHHHHhccCCcEEECCCCccC
Confidence            7899999999999999999999999999998621                  122222233333344456666543   2


Q ss_pred             CHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         334 DKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       334 ~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      +...    +......   ..+||+++|.+++.+|-
T Consensus        82 ~~~~----~~~~~~~---~~~i~l~~~~e~~~~R~  109 (154)
T cd00464          82 REEN----RRLLLEN---GIVVWLDASPEELLERL  109 (154)
T ss_pred             cHHH----HHHHHcC---CeEEEEeCCHHHHHHHh
Confidence            3322    2222333   36899999999988774

Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.

>PRK01184 hypothetical protein; Provisional

Probab=98.85  E-value=1.8e-08  Score=89.54  Aligned_cols=90  Identities=13%  Similarity=0.175  Sum_probs=62.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCc-chhH-------------H--------H-----HHHHHHHHHh--CC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDT-LGSW-------------Q--------K-----CVSVMKAALD--SG  323 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~-~~~~-------------~--------~-----~~~~~~~~l~--~g  323 (369)
                      .+|+|+|+|||||||+++ +++.+++.+++.++ ++..             .        .     ....+...+.  .+
T Consensus         2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~   80 (184)
T PRK01184          2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKKRGLEPTDENIGKVAIDLRKELGMDAVAKRTVPKIREKGD   80 (184)
T ss_pred             cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHChHHHHHHHHHHHHhcCC
Confidence            589999999999999987 77888999999744 4321             0        0     0012222233  25


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         324 LSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       324 ~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      ..||+|.+ ....+...+.+.+   +..+.++++++|.++..+|
T Consensus        81 ~~vvidg~-r~~~e~~~~~~~~---~~~~~~i~v~~~~~~~~~R  120 (184)
T PRK01184         81 EVVVIDGV-RGDAEVEYFRKEF---PEDFILIAIHAPPEVRFER  120 (184)
T ss_pred             CcEEEeCC-CCHHHHHHHHHhC---CcccEEEEEECCHHHHHHH
Confidence            68899987 4666666665543   3456789999999998887

>PRK13946 shikimate kinase; Provisional

Probab=98.85  E-value=2e-08  Score=89.67  Aligned_cols=91  Identities=19%  Similarity=0.264  Sum_probs=62.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh------------------HHHH-HHHHHHHHhCCCcEEEeC-
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS------------------WQKC-VSVMKAALDSGLSVVVDN-  330 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~------------------~~~~-~~~~~~~l~~g~~vIiD~-  330 (369)
                      +++.|+|+|+|||||||+++.|++.+++.+++.|.+..                  ++.. .+.....+..+..||... 
T Consensus         9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~~~~~~g~~~~e~~~~~ge~~~~~~e~~~l~~l~~~~~~Vi~~gg   88 (184)
T PRK13946          9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTEIERAARMTIAEIFAAYGEPEFRDLERRVIARLLKGGPLVLATGG   88 (184)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhcCCeEEECCC
Confidence            34689999999999999999999999999999997521                  1122 222333444554444432 


Q ss_pred             -CCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         331 -TNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       331 -tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                       +...+..|..+.    +.+   ..||+++|.+++.+|.
T Consensus        89 g~~~~~~~r~~l~----~~~---~~v~L~a~~e~~~~Rl  120 (184)
T PRK13946         89 GAFMNEETRAAIA----EKG---ISVWLKADLDVLWERV  120 (184)
T ss_pred             CCcCCHHHHHHHH----cCC---EEEEEECCHHHHHHHh
Confidence             345555555553    233   4699999999998875

>PRK13947 shikimate kinase; Provisional

Probab=98.85  E-value=1.8e-08  Score=88.39  Aligned_cols=87  Identities=14%  Similarity=0.265  Sum_probs=59.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh------------------HHHHHHHHHHHHhCCCcEEEeCCC---
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS------------------WQKCVSVMKAALDSGLSVVVDNTN---  332 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~------------------~~~~~~~~~~~l~~g~~vIiD~tn---  332 (369)
                      -|+|+|+|||||||+|+.|++.+++.+++.|.+..                  |+.+...+.+.+.....+|+....   
T Consensus         3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~~~~~~g~~~~~~~~~~ge~~~~~~e~~~~~~l~~~~~~vi~~g~g~v   82 (171)
T PRK13947          3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKEIEKMTGMTVAEIFEKDGEVRFRSEEKLLVKKLARLKNLVIATGGGVV   82 (171)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchhhhhhcCCcHHHHHHHhChHHHHHHHHHHHHHHhhcCCeEEECCCCCc
Confidence            48999999999999999999999999999998621                  233333344444444455655432   


Q ss_pred             CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         333 PDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       333 ~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      .....    +...++.+   .+||+++|.+.+.+|
T Consensus        83 l~~~~----~~~l~~~~---~vv~L~~~~~~l~~R  110 (171)
T PRK13947         83 LNPEN----VVQLRKNG---VVICLKARPEVILRR  110 (171)
T ss_pred             CCHHH----HHHHHhCC---EEEEEECCHHHHHHH
Confidence            23333    23334454   489999999998887

>PRK12339 2-phosphoglycerate kinase; Provisional

Probab=98.84  E-value=3e-08  Score=89.52  Aligned_cols=90  Identities=17%  Similarity=0.203  Sum_probs=62.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcE-EEeCCcchh------------------------------------------
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYT-TVNRDTLGS------------------------------------------  308 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~-~i~~D~~~~------------------------------------------  308 (369)
                      +.+|+++|+|||||||+|+.|++.+++. ++..|.++.                                          
T Consensus         3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~v   82 (197)
T PRK12339          3 STIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARAI   82 (197)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHHH
Confidence            5799999999999999999999998765 456665531                                          


Q ss_pred             HHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeC-CHHHHHHH
Q psy4598         309 WQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNI-SKEHAKHN  367 (369)
Q Consensus       309 ~~~~~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~-~~e~~~~R  367 (369)
                      +..+...+..++..|.++|+|+++..+..+..    +...+.  .++++.+ +.++..+|
T Consensus        83 ~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~----~~~~~v--~~i~l~v~d~e~lr~R  136 (197)
T PRK12339         83 MPGINRVIRRALLNGEDLVIESLYFHPPMIDE----NRTNNI--RAFYLYIRDAELHRSR  136 (197)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEecCcCHHHHHH----HHhcCe--EEEEEEeCCHHHHHHH
Confidence            11123446778899999999999988877632    333343  3444443 45554444

>KOG2914|consensus

Probab=98.83  E-value=2.4e-08  Score=91.31  Aligned_cols=101  Identities=14%  Similarity=0.160  Sum_probs=74.3

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCchhHHHHHHHHhc
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKN  134 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~  134 (369)
                      +.||+.+.++.|+..|.++.++||-+.     .+.+.-..+.+.++..++.  .++.........||.|++|..+++.+ 
T Consensus        93 ~~PGa~kLv~~L~~~gip~alat~s~~-----~~~~~k~~~~~~~~~~f~~--~v~~d~~~v~~gKP~Pdi~l~A~~~l-  164 (222)
T KOG2914|consen   93 LMPGAEKLVNHLKNNGIPVALATSSTS-----ASFELKISRHEDIFKNFSH--VVLGDDPEVKNGKPDPDIYLKAAKRL-  164 (222)
T ss_pred             cCCcHHHHHHHHHhCCCCeeEEecCCc-----ccHHHHHHHhhHHHHhcCC--CeecCCccccCCCCCchHHHHHHHhc-
Confidence            579999999999999999999999421     1112112233334444332  22222345667799999999999986 


Q ss_pred             CCccccC-CccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         135 GDLAIDI-SQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       135 ~~~~i~~-~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                         +..+ +.|+++.|+.                .-+++|+++|++.+-
T Consensus       165 ---~~~~~~k~lVfeds~----------------~Gv~aa~aagm~vi~  194 (222)
T KOG2914|consen  165 ---GVPPPSKCLVFEDSP----------------VGVQAAKAAGMQVVG  194 (222)
T ss_pred             ---CCCCccceEEECCCH----------------HHHHHHHhcCCeEEE
Confidence               4566 9999999999                799999999999864

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=98.83  E-value=3.3e-08  Score=87.33  Aligned_cols=89  Identities=18%  Similarity=0.285  Sum_probs=62.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh------------------HHHHHHHHHHHHhCCCcEEEeCCCC-
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS------------------WQKCVSVMKAALDSGLSVVVDNTNP-  333 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~------------------~~~~~~~~~~~l~~g~~vIiD~tn~-  333 (369)
                      ..|+|+|++||||||+++.|++.+++.+++.|....                  |+.....+.+.+.....+|+.+... 
T Consensus         5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~~i~~~~g~~i~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vi~~ggg~   84 (172)
T PRK05057          5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADIGWVFDVEGEEGFRDREEKVINELTEKQGIVLATGGGS   84 (172)
T ss_pred             CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCchHHHHhCcCHhHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCCch
Confidence            469999999999999999999999999999996421                  2222233333344445667765432 


Q ss_pred             --CHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         334 --DKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       334 --~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                        .+..+..    .++++   .+||+++|.+++.+|.
T Consensus        85 v~~~~~~~~----l~~~~---~vv~L~~~~e~~~~Ri  114 (172)
T PRK05057         85 VKSRETRNR----LSARG---VVVYLETTIEKQLART  114 (172)
T ss_pred             hCCHHHHHH----HHhCC---EEEEEeCCHHHHHHHH
Confidence              3344433    33444   5899999999999986

>PRK08238 hypothetical protein; Validated

Probab=98.83  E-value=1.4e-08  Score=103.27  Aligned_cols=124  Identities=21%  Similarity=0.138  Sum_probs=91.4

Q ss_pred             CCceEEEEecCCceeecCCCCC----------------------------------CCCCccccccccccHHHHHHHHHH
Q psy4598          23 NSAKIASFDLDGTLITTKSGKV----------------------------------FPVDTHDWKLLFSNIESVLKQYLD   68 (369)
Q Consensus        23 ~~~k~~~fDlDgTLi~~~sg~~----------------------------------~~~~~~d~~~~~p~v~~~L~~L~~   68 (369)
                      .+.+.++||+||||+.+++-..                                  -..++.... ++|++.+.|+++++
T Consensus         8 ~~~~pl~~DlDgTLi~td~l~e~~~~~l~~~p~~~~~l~~~~~~g~a~lK~~~a~~~~~d~~~lp-~~pga~e~L~~lk~   86 (479)
T PRK08238          8 SRDLPLVVDLDGTLIRTDLLHESIFALLRRNPLALLRLPLWLLRGKAALKRRLARRVDLDVATLP-YNEEVLDYLRAERA   86 (479)
T ss_pred             CCCCCEEEeCCCCccccchHHHHHHHHHHhChHHHHHHHHHHHhcHHHHHHHHHhhcCCChhhCC-CChhHHHHHHHHHH
Confidence            3456899999999999876222                                  000112222 57999999999999


Q ss_pred             CCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEee
Q psy4598          69 DGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAG  148 (369)
Q Consensus        69 ~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VG  148 (369)
                      +|++++|+||..            +..++.+++.+|+ |+.+++++.....||.+.. +.+.+.+      ..+++.|+|
T Consensus        87 ~G~~v~LaTas~------------~~~a~~i~~~lGl-Fd~Vigsd~~~~~kg~~K~-~~l~~~l------~~~~~~yvG  146 (479)
T PRK08238         87 AGRKLVLATASD------------ERLAQAVAAHLGL-FDGVFASDGTTNLKGAAKA-AALVEAF------GERGFDYAG  146 (479)
T ss_pred             CCCEEEEEeCCC------------HHHHHHHHHHcCC-CCEEEeCCCccccCCchHH-HHHHHHh------CccCeeEec
Confidence            999999999942            3456677888888 8889998877777776653 3344443      245689999


Q ss_pred             CccccccccCCCCCCCCCcccHHHHHhCCCCc-cCc
Q psy4598         149 DAAGRAANWAPKKKKDFACTDHLFAFNLNLAF-FTP  183 (369)
Q Consensus       149 D~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f-~~p  183 (369)
                      |+.                +|+..+..+|-.+ ++|
T Consensus       147 DS~----------------~Dlp~~~~A~~av~Vn~  166 (479)
T PRK08238        147 NSA----------------ADLPVWAAARRAIVVGA  166 (479)
T ss_pred             CCH----------------HHHHHHHhCCCeEEECC
Confidence            999                8999999999776 465

>PRK13949 shikimate kinase; Provisional

Probab=98.83  E-value=2.7e-08  Score=87.70  Aligned_cols=91  Identities=15%  Similarity=0.194  Sum_probs=59.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch------------------hHHHHHHHHHHHHhCCCcEEEeCCCCCH
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG------------------SWQKCVSVMKAALDSGLSVVVDNTNPDK  335 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~------------------~~~~~~~~~~~~l~~g~~vIiD~tn~~~  335 (369)
                      -|+|+|+|||||||+++.|++.+++.+++.|.+-                  .++.+...+.+.+.....+||.+.+...
T Consensus         3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~~i~~~~~~~~~~~~~~~g~~~fr~~e~~~l~~l~~~~~~vis~Ggg~~   82 (169)
T PRK13949          3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDFFIENRFHKTVGDIFAERGEAVFRELERNMLHEVAEFEDVVISTGGGAP   82 (169)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCCeecccHHHHHHHCccHHHHHHHhCHHHHHHHHHHHHHHHHhCCCEEEEcCCccc
Confidence            4899999999999999999999999999999762                  1222333333334433456665433222


Q ss_pred             HHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         336 ESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       336 ~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      ..... .++.++++   .+||+++|.+.+.+|-
T Consensus        83 ~~~~~-~~~l~~~~---~vi~L~~~~~~~~~Ri  111 (169)
T PRK13949         83 CFFDN-MELMNASG---TTVYLKVSPEVLFVRL  111 (169)
T ss_pred             CCHHH-HHHHHhCC---eEEEEECCHHHHHHHH
Confidence            11111 12234445   4689999999998873

>PRK14528 adenylate kinase; Provisional

Probab=98.82  E-value=3.5e-08  Score=88.25  Aligned_cols=95  Identities=13%  Similarity=0.218  Sum_probs=68.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch-h-----------HHH------------HHHHHHHHHh---CCCc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG-S-----------WQK------------CVSVMKAALD---SGLS  325 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~-~-----------~~~------------~~~~~~~~l~---~g~~  325 (369)
                      +.|++.|+|||||||+++.|++.+++.+++.+++- .           ...            ....+.+.+.   ....
T Consensus         2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~~~g~~~~~~~~~g~lvp~~~~~~~~~~~l~~~~~~~g   81 (186)
T PRK14528          2 KNIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQTAMGIEAKRYMDAGDLVPDSVVIGIIKDRIREADCKNG   81 (186)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCCHHHHHHHHHHhCCCccCHHHHHHHHHHHHhCcCccCc
Confidence            34789999999999999999999999999998862 1           000            1112233332   2346


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCC-eEEEEEEeCCHHHHHHH
Q psy4598         326 VVVDNTNPDKESRHRYIEAAKQHGV-RCIAVHMNISKEHAKHN  367 (369)
Q Consensus       326 vIiD~tn~~~~~r~~~~~la~~~~~-~v~~v~l~~~~e~~~~R  367 (369)
                      +|+|+.-.+..+-..+.++....+. .-.++++++|.+++.+|
T Consensus        82 ~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~R  124 (186)
T PRK14528         82 FLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKR  124 (186)
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence            9999976677776667666655443 44689999999999887

>PRK02496 adk adenylate kinase; Provisional

Probab=98.82  E-value=3.2e-08  Score=88.05  Aligned_cols=95  Identities=14%  Similarity=0.215  Sum_probs=68.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hhH-----------------------HHHHHHHHHHHh---CCCcE
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GSW-----------------------QKCVSVMKAALD---SGLSV  326 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~~-----------------------~~~~~~~~~~l~---~g~~v  326 (369)
                      -|+|.|+|||||||+++.|++.+++.+++.+++ +..                       +.....+...+.   ....+
T Consensus         3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~g~   82 (184)
T PRK02496          3 RLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKEQTPLGIKAQGYMDKGELVPDQLVLDLVQERLQQPDAANGW   82 (184)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhccChhHHHHHHHHHCCCccCHHHHHHHHHHHHhCcCccCCE
Confidence            378899999999999999999999999998654 210                       011222333332   23469


Q ss_pred             EEeCCCCCHHHHHHHHHHHHhcCC-eEEEEEEeCCHHHHHHHc
Q psy4598         327 VVDNTNPDKESRHRYIEAAKQHGV-RCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       327 IiD~tn~~~~~r~~~~~la~~~~~-~v~~v~l~~~~e~~~~Rn  368 (369)
                      |+|+...+..+...+..++...+. +..++++++|.+++.+|-
T Consensus        83 vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl  125 (184)
T PRK02496         83 ILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERL  125 (184)
T ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHH
Confidence            999988777776666666665543 557899999999999883

>KOG3109|consensus

Probab=98.81  E-value=1.6e-08  Score=90.48  Aligned_cols=92  Identities=18%  Similarity=0.248  Sum_probs=74.6

Q ss_pred             ccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCC------CCCCCCchhHHHH
Q psy4598          57 SNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQY------DRYRKPVPGMWEY  128 (369)
Q Consensus        57 p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~------~~~rKP~~gm~~~  128 (369)
                      |-..+.|-.|+..+  .++|||.            -+.....+++.|||.  |+.++|.+.      ....||.+.+|+.
T Consensus       103 ~~LRnlLL~l~~r~--k~~FTNa------------~k~HA~r~Lk~LGieDcFegii~~e~~np~~~~~vcKP~~~afE~  168 (244)
T KOG3109|consen  103 PVLRNLLLSLKKRR--KWIFTNA------------YKVHAIRILKKLGIEDCFEGIICFETLNPIEKTVVCKPSEEAFEK  168 (244)
T ss_pred             HHHHHHHHhCcccc--EEEecCC------------cHHHHHHHHHHhChHHhccceeEeeccCCCCCceeecCCHHHHHH
Confidence            34577777777664  8999993            345667789999995  887777753      3468999999999


Q ss_pred             HHHHhcCCcccc-CCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         129 LSQEKNGDLAID-ISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       129 ~~~~~~~~~~i~-~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +.+..    +++ |.+++|+.|+.                .-|+.|+..|++++.
T Consensus       169 a~k~a----gi~~p~~t~FfDDS~----------------~NI~~ak~vGl~tvl  203 (244)
T KOG3109|consen  169 AMKVA----GIDSPRNTYFFDDSE----------------RNIQTAKEVGLKTVL  203 (244)
T ss_pred             HHHHh----CCCCcCceEEEcCch----------------hhHHHHHhccceeEE
Confidence            99986    677 99999999999                799999999999843

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=98.80  E-value=4.3e-08  Score=87.06  Aligned_cols=94  Identities=16%  Similarity=0.305  Sum_probs=67.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh--------------H---------HHHHHHHHHHHhC---CCcE
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS--------------W---------QKCVSVMKAALDS---GLSV  326 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~--------------~---------~~~~~~~~~~l~~---g~~v  326 (369)
                      -|++.|+|||||||+|+.|++.++.+||+.+++ +.              +         .-......+.++.   ...+
T Consensus         2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~~~~   81 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCKAGF   81 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhcccCeE
Confidence            378999999999999999999999999998776 10              0         0011222222222   2269


Q ss_pred             EEeCCCCCHHHHHHHHHHHHhcCC-eEEEEEEeCCHHHHHHH
Q psy4598         327 VVDNTNPDKESRHRYIEAAKQHGV-RCIAVHMNISKEHAKHN  367 (369)
Q Consensus       327 IiD~tn~~~~~r~~~~~la~~~~~-~v~~v~l~~~~e~~~~R  367 (369)
                      |+|+...+...-..+.....++|. .-.++.++++.+....|
T Consensus        82 I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r  123 (178)
T COG0563          82 ILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLER  123 (178)
T ss_pred             EEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHH
Confidence            999988777777777777777764 34688889999888776

>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5

Probab=98.80  E-value=1.9e-08  Score=97.63  Aligned_cols=44  Identities=23%  Similarity=0.394  Sum_probs=39.0

Q ss_pred             EEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHC----CcEEEEEecCCCcC
Q psy4598          27 IASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDD----GYKLVIFTNQGAIG   83 (369)
Q Consensus        27 ~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~----G~~i~i~TNq~gi~   83 (369)
                      .++||+||||+....             ++|++.++|+.|+..    |++++++||.+|..
T Consensus         2 ~~ifD~DGvL~~g~~-------------~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~s   49 (321)
T TIGR01456         2 GFAFDIDGVLFRGKK-------------PIAGASDALRRLNRNQGQLKIPYIFLTNGGGFS   49 (321)
T ss_pred             EEEEeCcCceECCcc-------------ccHHHHHHHHHHhccccccCCCEEEEecCCCCC
Confidence            478999999997642             699999999999998    99999999988765

The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.

>PF13242 Hydrolase_like: HAD-hyrolase-like; PDB: 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A 2HX1_D 2X4D_A 3HLT_C 3L1U_B

Probab=98.79  E-value=4.9e-09  Score=79.65  Aligned_cols=48  Identities=27%  Similarity=0.263  Sum_probs=43.2

Q ss_pred             CCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCch
Q psy4598         118 YRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPE  184 (369)
Q Consensus       118 ~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~pe  184 (369)
                      ++||+|+|++.+++++    ++++++++||||+.-               +|+.+|+++|+.++...
T Consensus         2 ~gKP~p~~~~~a~~~~----~~~~~~~~~VGD~~~---------------~Di~~a~~~G~~~ilV~   49 (75)
T PF13242_consen    2 CGKPSPGMLEQALKRL----GVDPSRCVMVGDSLE---------------TDIEAAKAAGIDTILVL   49 (75)
T ss_dssp             CSTTSHHHHHHHHHHH----TSGGGGEEEEESSTT---------------THHHHHHHTTSEEEEES
T ss_pred             CCCCcHHHHHHHHHHc----CCCHHHEEEEcCCcH---------------hHHHHHHHcCCcEEEEC
Confidence            7999999999999996    789999999999932               89999999999997553

...

>PRK13808 adenylate kinase; Provisional

Probab=98.79  E-value=3.9e-08  Score=95.12  Aligned_cols=93  Identities=11%  Similarity=0.217  Sum_probs=69.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh--------------H---------HHHHHHHHHHHh---CCCcEE
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS--------------W---------QKCVSVMKAALD---SGLSVV  327 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~--------------~---------~~~~~~~~~~l~---~g~~vI  327 (369)
                      |+|.|+|||||||+++.|++.+++.+|+.+++ +.              +         +.....+.+.+.   ....+|
T Consensus         3 Iiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~~~s~~g~~~~~~~~~G~lVPdeiv~~li~e~l~~~~~~~G~I   82 (333)
T PRK13808          3 LILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVAAGTPVGLKAKDIMASGGLVPDEVVVGIISDRIEQPDAANGFI   82 (333)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhhcCChhhHHHHHHHHcCCCCCHHHHHHHHHHHHhcccccCCEE
Confidence            78899999999999999999999999998665 21              0         111222333332   235799


Q ss_pred             EeCCCCCHHHHHHHHHHHHhcCC-eEEEEEEeCCHHHHHHH
Q psy4598         328 VDNTNPDKESRHRYIEAAKQHGV-RCIAVHMNISKEHAKHN  367 (369)
Q Consensus       328 iD~tn~~~~~r~~~~~la~~~~~-~v~~v~l~~~~e~~~~R  367 (369)
                      ||+...+.++...|..+....++ +-.+|+|++|.+++++|
T Consensus        83 LDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~R  123 (333)
T PRK13808         83 LDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLAR  123 (333)
T ss_pred             EeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHH
Confidence            99977777777777666666665 34688999999999988

>PTZ00445 p36-lilke protein; Provisional

Probab=98.79  E-value=3.1e-08  Score=88.95  Aligned_cols=138  Identities=14%  Similarity=0.151  Sum_probs=98.9

Q ss_pred             CCceEEEEecCCceeecCCCCCCCCCccccc---cccccHHHHHHHHHHCCcEEEEEecCCCcC--CC----CCCHHHHH
Q psy4598          23 NSAKIASFDLDGTLITTKSGKVFPVDTHDWK---LLFSNIESVLKQYLDDGYKLVIFTNQGAIG--RK----KMSTRDFQ   93 (369)
Q Consensus        23 ~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~---~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~--~~----~~~~~~~~   93 (369)
                      ...|++++|+|.|||.--||.......++-.   -.-|.....+.+|++.|++|+|||=.+...  ..    +++.   .
T Consensus        41 ~GIk~Va~D~DnTlI~~HsgG~~~~~~~~~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~~~~~~~~~~Isg---~  117 (219)
T PTZ00445         41 CGIKVIASDFDLTMITKHSGGYIDPDNDDIRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKELIPSENRPRYISG---D  117 (219)
T ss_pred             cCCeEEEecchhhhhhhhcccccCCCcchhhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhhccccCCcceech---H
Confidence            4579999999999998777663333212221   145778889999999999999999654322  11    1111   1


Q ss_pred             HHHHHHHHHcCCCe--EEEE--ecC---------CCCCCCCchhH--H--HHHHHHhcCCccccCCccEEeeCccccccc
Q psy4598          94 AKAEKIIKSLNVPV--QMFV--ATQ---------YDRYRKPVPGM--W--EYLSQEKNGDLAIDISQSFYAGDAAGRAAN  156 (369)
Q Consensus        94 ~~i~~~l~~l~i~~--~~~~--~~~---------~~~~rKP~~gm--~--~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~  156 (369)
                      +.++..++.-+..+  +-++  .+.         .....||+|++  |  +.+++++    +++|++++||-|..     
T Consensus       118 ~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl~KPdp~iK~yHle~ll~~~----gl~peE~LFIDD~~-----  188 (219)
T PTZ00445        118 RMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLGLDAPMPLDKSYHLKQVCSDF----NVNPDEILFIDDDM-----  188 (219)
T ss_pred             HHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhhcccCCCccchHHHHHHHHHHc----CCCHHHeEeecCCH-----
Confidence            35667777666544  3223  232         13668999999  9  9999996    79999999999999     


Q ss_pred             cCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         157 WAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       157 ~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                                 .-+++|.+.|+..+..
T Consensus       189 -----------~NVeaA~~lGi~ai~f  204 (219)
T PTZ00445        189 -----------NNCKNALKEGYIALHV  204 (219)
T ss_pred             -----------HHHHHHHHCCCEEEEc
Confidence                       7999999999998654

>PRK00625 shikimate kinase; Provisional

Probab=98.79  E-value=2.7e-08  Score=87.98  Aligned_cols=90  Identities=16%  Similarity=0.141  Sum_probs=58.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch----------h------------HHHHHHHHHHHHhCCCcEEEeCC
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG----------S------------WQKCVSVMKAALDSGLSVVVDNT  331 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~----------~------------~~~~~~~~~~~l~~g~~vIiD~t  331 (369)
                      .|+|+|+|||||||+++.|++.+++.+++.|.+-          .            |+.....+...+... .+||...
T Consensus         2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~g~~~~~~i~eif~~~Ge~~fr~~E~~~l~~l~~~-~~VIs~G   80 (173)
T PRK00625          2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNYHGALYSSPKEIYQAYGEEGFCREEFLALTSLPVI-PSIVALG   80 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHhCCCCCCCHHHHHHHHCHHHHHHHHHHHHHHhccC-CeEEECC
Confidence            4899999999999999999999999999999752          1            222333333444433 4454443


Q ss_pred             CCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         332 NPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       332 n~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      ....... ...+..+..+   .+||+++|.+++.+|.
T Consensus        81 Gg~~~~~-e~~~~l~~~~---~Vv~L~~~~e~l~~Rl  113 (173)
T PRK00625         81 GGTLMIE-PSYAHIRNRG---LLVLLSLPIATIYQRL  113 (173)
T ss_pred             CCccCCH-HHHHHHhcCC---EEEEEECCHHHHHHHH
Confidence            3222222 2222233333   4899999999998884

>PTZ00088 adenylate kinase 1; Provisional

Probab=98.78  E-value=6.1e-08  Score=89.53  Aligned_cols=91  Identities=12%  Similarity=0.173  Sum_probs=65.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchhH------------------------HHHHHHHHHHHh-----CC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSW------------------------QKCVSVMKAALD-----SG  323 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~~------------------------~~~~~~~~~~l~-----~g  323 (369)
                      .-|+|.|+|||||||+|+.|++.+++.+|+.|++-..                        +...+.+.+.+.     ..
T Consensus         7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~l~~~~~~~~   86 (229)
T PTZ00088          7 LKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDEIAKVTDDCF   86 (229)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhhccccC
Confidence            3489999999999999999999999999999887210                        111222233332     24


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         324 LSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       324 ~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      ..+|+|+...+..++..+.+.    .-...++++++|.+++.+|
T Consensus        87 ~g~iLDGfPRt~~Qa~~l~~~----~~~~~vi~l~~~~~~~~~R  126 (229)
T PTZ00088         87 KGFILDGFPRNLKQCKELGKI----TNIDLFVNIYLPRNILIKK  126 (229)
T ss_pred             ceEEEecCCCCHHHHHHHHhc----CCCCEEEEEeCCHHHHHHH
Confidence            579999977677666665432    3345689999999998877

>KOG3062|consensus

Probab=98.78  E-value=1.1e-08  Score=92.16  Aligned_cols=97  Identities=25%  Similarity=0.229  Sum_probs=78.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-----C-cEEEeCCc-ch---------------hHHHHHHHHHHHHhCCCcEEEe
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-----N-YTTVNRDT-LG---------------SWQKCVSVMKAALDSGLSVVVD  329 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-----~-~~~i~~D~-~~---------------~~~~~~~~~~~~l~~g~~vIiD  329 (369)
                      +.+|++||.|.|||||.|+.|.+.+     . .+.|..|+ +.               ....+...+...++++..||+|
T Consensus         1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~deslg~~~ns~y~~s~~EK~lRg~L~S~v~R~Lsk~~iVI~D   80 (281)
T KOG3062|consen    1 MPLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDESLGIEKNSNYGDSQAEKALRGKLRSAVDRSLSKGDIVIVD   80 (281)
T ss_pred             CCeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhhcCCCCcccccccHHHHHHHHHHHHHHHhhcccCcEEEEe
Confidence            3589999999999999999998754     2 44444443 21               1234556677778899999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         330 NTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       330 ~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      +-|.-+..|-++-..++..+....+|+..+|.|+|++-|
T Consensus        81 slNyIKGfRYeLyC~ak~~~tt~Cvv~t~vp~e~~r~~N  119 (281)
T KOG3062|consen   81 SLNYIKGFRYELYCEAKAARTTYCVVHTAVPQELCREWN  119 (281)
T ss_pred             cccccccceeeeeeehhccceeEEEEEecCCHHHHHHhc
Confidence            999999999999999999999999999999999998865

>PRK03731 aroL shikimate kinase II; Reviewed

Probab=98.78  E-value=4.1e-08  Score=86.18  Aligned_cols=88  Identities=19%  Similarity=0.306  Sum_probs=60.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh------------------HHHHHHHHHHHHhCCCcEEEeCCC-
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS------------------WQKCVSVMKAALDSGLSVVVDNTN-  332 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~------------------~~~~~~~~~~~l~~g~~vIiD~tn-  332 (369)
                      ++.|+|+|+|||||||+++.|++.+++.+++.|.+..                  |+.....+...+..+ .+||.+.. 
T Consensus         2 ~~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~~~~~~g~~~~~~~~~~g~~~~~~~e~~~~~~~~~~-~~vi~~ggg   80 (171)
T PRK03731          2 TQPLFLVGARGCGKTTVGMALAQALGYRFVDTDQWLQSTSNMTVAEIVEREGWAGFRARESAALEAVTAP-STVIATGGG   80 (171)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHhcCC-CeEEECCCC
Confidence            3568899999999999999999999999999998631                  222223333444443 45565443 


Q ss_pred             --CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         333 --PDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       333 --~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                        .....+    .+.++.+   .+||+++|.+++.+|
T Consensus        81 ~vl~~~~~----~~l~~~~---~~v~l~~~~~~~~~R  110 (171)
T PRK03731         81 IILTEENR----HFMRNNG---IVIYLCAPVSVLANR  110 (171)
T ss_pred             ccCCHHHH----HHHHhCC---EEEEEECCHHHHHHH
Confidence              233333    3334445   488999999998877

>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells

Probab=98.77  E-value=4.7e-08  Score=84.21  Aligned_cols=92  Identities=15%  Similarity=0.277  Sum_probs=65.5

Q ss_pred             EEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh-----------------------HHHHHHHHHHHHh---CCCcEEEe
Q psy4598         277 MIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS-----------------------WQKCVSVMKAALD---SGLSVVVD  329 (369)
Q Consensus       277 l~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~-----------------------~~~~~~~~~~~l~---~g~~vIiD  329 (369)
                      +.|+|||||||+|+.|++.+++.+|+..++ +.                       -+...+.+...+.   ....+|+|
T Consensus         1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~~~~~~g~ild   80 (151)
T PF00406_consen    1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDSELGKQIQEYLDNGELVPDELVIELLKERLEQPPCNRGFILD   80 (151)
T ss_dssp             EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTSHHHHHHHHHHHTTSS--HHHHHHHHHHHHHSGGTTTEEEEE
T ss_pred             CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhhHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccceeeee
Confidence            579999999999999999999999998664 21                       0112233333443   35689999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeE-EEEEEeCCHHHHHHHc
Q psy4598         330 NTNPDKESRHRYIEAAKQHGVRC-IAVHMNISKEHAKHNI  368 (369)
Q Consensus       330 ~tn~~~~~r~~~~~la~~~~~~v-~~v~l~~~~e~~~~Rn  368 (369)
                      +.-.+..+...+.+.....+..+ .++++++|.+.+.+|-
T Consensus        81 GfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~  120 (151)
T PF00406_consen   81 GFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERL  120 (151)
T ss_dssp             SB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHH
T ss_pred             eccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhc
Confidence            99888777777766554455554 8999999999999883

Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....

>PRK06547 hypothetical protein; Provisional

Probab=98.77  E-value=4.4e-08  Score=86.59  Aligned_cols=97  Identities=13%  Similarity=0.232  Sum_probs=67.1

Q ss_pred             cccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh-H-------HHHHHHHHH--------------------H
Q psy4598         268 KAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS-W-------QKCVSVMKA--------------------A  319 (369)
Q Consensus       268 ~~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~-~-------~~~~~~~~~--------------------~  319 (369)
                      ....+.+|++.|+|||||||+++.|++.+++.+++.|.+.. +       +.+......                    .
T Consensus        11 ~~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~l~~~~l~~g~~~~~~yd~~~~~~~~~~~   90 (172)
T PRK06547         11 CGGGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLDDLYPGWHGLAAASEHVAEAVLDEGRPGRWRWDWANNRPGDWVS   90 (172)
T ss_pred             hcCCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecccceecccccCChHHHHHHHHHHhCCCCceecCCCCCCCCCCcEE
Confidence            35567899999999999999999999999999999998631 1       111111110                    0


Q ss_pred             HhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         320 LDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       320 l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      +..+..||+++...-   +..+..++.+ +..+..||+++|.+++.+|-
T Consensus        91 l~~~~vVIvEG~~al---~~~~r~~~d~-~g~v~~I~ld~~~~vr~~R~  135 (172)
T PRK06547         91 VEPGRRLIIEGVGSL---TAANVALASL-LGEVLTVWLDGPEALRKERA  135 (172)
T ss_pred             eCCCCeEEEEehhhc---cHHHHHHhcc-CCCEEEEEEECCHHHHHHHH
Confidence            112346778887643   2345555554 44578999999999999873

>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional

Probab=98.77  E-value=7e-08  Score=92.00  Aligned_cols=97  Identities=19%  Similarity=0.230  Sum_probs=68.7

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchhHHHHHHHHHHH-HhCCCcEEEeCCCCCH-HHHHHHHHHHHh
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAA-LDSGLSVVVDNTNPDK-ESRHRYIEAAKQ  347 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~~~~~~~~~~~~-l~~g~~vIiD~tn~~~-~~r~~~~~la~~  347 (369)
                      .++.+|+++|++||||||+++.|. ..++..++.-....+..+.+.+... ......|++|..+..- ......+...++
T Consensus         4 ~~~~~i~i~G~~GsGKtt~~~~l~-~~g~~~~d~~~~~L~~~l~~~~~~~~~~~~~av~iD~r~~~~~~~~~~~~~~L~~   82 (288)
T PRK05416          4 APMRLVIVTGLSGAGKSVALRALE-DLGYYCVDNLPPSLLPKLVELLAQSGGIRKVAVVIDVRSRPFFDDLPEALDELRE   82 (288)
T ss_pred             CCceEEEEECCCCCcHHHHHHHHH-HcCCeEECCcCHHHHHHHHHHHHhcCCCCCeEEEEccCchhhHHHHHHHHHHHHH
Confidence            345799999999999999999997 4577777665555455555554432 2234578899886532 223344444455


Q ss_pred             cCCeEEEEEEeCCHHHHHHH
Q psy4598         348 HGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       348 ~~~~v~~v~l~~~~e~~~~R  367 (369)
                      .+..+.+||++++.+++.+|
T Consensus        83 ~g~~~~iI~L~a~~e~L~~R  102 (288)
T PRK05416         83 RGIDVRVLFLDASDEVLIRR  102 (288)
T ss_pred             cCCcEEEEEEECCHHHHHHH
Confidence            68899999999999999988

>PRK03839 putative kinase; Provisional

Probab=98.76  E-value=2.7e-08  Score=88.17  Aligned_cols=80  Identities=16%  Similarity=0.284  Sum_probs=57.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh---------------HHHHHHHHHHHHhCCCcEEEeCCCCCHHHH
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS---------------WQKCVSVMKAALDSGLSVVVDNTNPDKESR  338 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~---------------~~~~~~~~~~~l~~g~~vIiD~tn~~~~~r  338 (369)
                      .|+|+|+|||||||+++.|++.+++.+++.|.+-.               ++.+...+.+.+ .+..+|+|+.+.     
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~vIidG~~~-----   75 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALKKGIGEEKDDEMEIDFDKLAYFIEEEF-KEKNVVLDGHLS-----   75 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhhcCCcccCChhhhcCHHHHHHHHHHhc-cCCCEEEEeccc-----
Confidence            58999999999999999999999999999987621               222333333322 356799998542     


Q ss_pred             HHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         339 HRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       339 ~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                       .+    .  ... .+++++++.+++.+|
T Consensus        76 -~l----~--~~~-~vi~L~~~~~~~~~R   96 (180)
T PRK03839         76 -HL----L--PVD-YVIVLRAHPKIIKER   96 (180)
T ss_pred             -cc----c--CCC-EEEEEECCHHHHHHH
Confidence             11    1  222 368899999999887

>KOG3079|consensus

Probab=98.73  E-value=7.2e-08  Score=84.53  Aligned_cols=98  Identities=13%  Similarity=0.247  Sum_probs=73.6

Q ss_pred             cccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh------------------------HHHHHHHHHHHHhC
Q psy4598         268 KAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS------------------------WQKCVSVMKAALDS  322 (369)
Q Consensus       268 ~~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~------------------------~~~~~~~~~~~l~~  322 (369)
                      .+.++.+|++.|.|||||-|.+..+++.+++.|||+.++ |.                        -+-+.+.+++++.+
T Consensus         4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gse~g~~I~~~i~~G~iVP~ei~~~LL~~am~~   83 (195)
T KOG3079|consen    4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGSERGALIKEIIKNGDLVPVEITLSLLEEAMRS   83 (195)
T ss_pred             cccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccChHHHHHHHHHHcCCcCcHHHHHHHHHHHHHh
Confidence            456778999999999999999999999999999998765 21                        11233444555533


Q ss_pred             C---CcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         323 G---LSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       323 g---~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      .   ..++||+.-....+...|-+....  .+-.+++|+|+.|+|.+|
T Consensus        84 ~~~~~~fLIDGyPR~~~q~~~fe~~i~~--~~~fvl~fdc~ee~~l~R  129 (195)
T KOG3079|consen   84 SGDSNGFLIDGYPRNVDQLVEFERKIQG--DPDFVLFFDCPEETMLKR  129 (195)
T ss_pred             cCCCCeEEecCCCCChHHHHHHHHHhcC--CCCEEEEEeCCHHHHHHH
Confidence            2   239999998888888777665442  344689999999998877

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.73  E-value=8.5e-08  Score=85.65  Aligned_cols=91  Identities=16%  Similarity=0.281  Sum_probs=62.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch-----------------hH-HHH------------------HHH
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG-----------------SW-QKC------------------VSV  315 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~-----------------~~-~~~------------------~~~  315 (369)
                      ..+|+|+|++||||||+++.|+...+..++..|..-                 .+ +.+                  ...
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~~~~   81 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSENHIALSEQEFFTRAGQNLFALSWHANGLYYGVGIE   81 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchhHHhheeEcHHHHHHHHHCCchhhHHHHhCCccCCcHH
Confidence            357899999999999999999988755444444320                 00 000                  012


Q ss_pred             HHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         316 MKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       316 ~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      +.+.++.|..||++++      +..+..+.+..+..+.++++++|.++..+|-
T Consensus        82 ~~~~l~~g~~VI~~G~------~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL  128 (186)
T PRK10078         82 IDLWLHAGFDVLVNGS------RAHLPQARARYQSALLPVCLQVSPEILRQRL  128 (186)
T ss_pred             HHHHHhCCCEEEEeCh------HHHHHHHHHHcCCCEEEEEEeCCHHHHHHHH
Confidence            4556778888888655      3333444555667788899999999988873

>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain

Probab=98.73  E-value=1.2e-08  Score=89.28  Aligned_cols=118  Identities=16%  Similarity=0.174  Sum_probs=84.9

Q ss_pred             eEEEEecCCceeecCCCCCCCCCcccc--------------ccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHH
Q psy4598          26 KIASFDLDGTLITTKSGKVFPVDTHDW--------------KLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRD   91 (369)
Q Consensus        26 k~~~fDlDgTLi~~~sg~~~~~~~~d~--------------~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~   91 (369)
                      +.+++|||+||+.+....  .....|+              ...=||+.+.|++|.+. |.|+|+|+.+           
T Consensus         2 ~~lvlDLDeTLi~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~RPgl~eFL~~l~~~-yei~I~Ts~~-----------   67 (162)
T TIGR02251         2 KTLVLDLDETLVHSTFKM--PKVDADFKVPVLIDGKIIPVYVFKRPHVDEFLERVSKW-YELVIFTASL-----------   67 (162)
T ss_pred             cEEEEcCCCCcCCCCCCC--CCCCCceEEEEEecCcEEEEEEEECCCHHHHHHHHHhc-CEEEEEcCCc-----------
Confidence            678999999999875432  1111221              23469999999999987 9999999943           


Q ss_pred             HHHHHHHHHHHcCC---CeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcc
Q psy4598          92 FQAKAEKIIKSLNV---PVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACT  168 (369)
Q Consensus        92 ~~~~i~~~l~~l~i---~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~  168 (369)
                       +...+.+++.++.   .|...++.+.+...+|.   +...++.    ++.++++++||||+.                .
T Consensus        68 -~~yA~~il~~ldp~~~~f~~~l~r~~~~~~~~~---~~K~L~~----l~~~~~~vIiVDD~~----------------~  123 (162)
T TIGR02251        68 -EEYADPVLDILDRGGKVISRRLYRESCVFTNGK---YVKDLSL----VGKDLSKVIIIDNSP----------------Y  123 (162)
T ss_pred             -HHHHHHHHHHHCcCCCEEeEEEEccccEEeCCC---EEeEchh----cCCChhhEEEEeCCh----------------h
Confidence             3345666777764   46666677777666765   3333444    367899999999999                7


Q ss_pred             cHHHHHhCCCCcc
Q psy4598         169 DHLFAFNLNLAFF  181 (369)
Q Consensus       169 D~~~A~n~Gi~f~  181 (369)
                      |+.++..+||...
T Consensus       124 ~~~~~~~NgI~i~  136 (162)
T TIGR02251       124 SYSLQPDNAIPIK  136 (162)
T ss_pred             hhccCccCEeecC
Confidence            8888988998853

This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.

>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein

Probab=98.71  E-value=5.8e-08  Score=88.14  Aligned_cols=90  Identities=12%  Similarity=0.142  Sum_probs=65.0

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eE--EEEec-----CCCCCCCCchhH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQ--MFVAT-----QYDRYRKPVPGM  125 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~--~~~~~-----~~~~~rKP~~gm  125 (369)
                      ++||+.+.|+.|++.| +++|+|+.            +...+..+++.+|++  |.  ..+..     +.....||.+..
T Consensus        69 l~pga~ell~~lk~~~-~~~IVS~~------------~~~~~~~il~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~  135 (203)
T TIGR02137        69 PLEGAVEFVDWLRERF-QVVILSDT------------FYEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQ  135 (203)
T ss_pred             CCccHHHHHHHHHhCC-eEEEEeCC------------hHHHHHHHHHHcCCchhhceeeEEecCCeeECeeecCcchHHH
Confidence            6899999999999975 99999992            445667788899875  21  11211     111245666666


Q ss_pred             HHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc
Q psy4598         126 WEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF  180 (369)
Q Consensus       126 ~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f  180 (369)
                      ....+++.    +   .+++||||+.                +|+.++.++|+..
T Consensus       136 ~l~~l~~~----~---~~~v~vGDs~----------------nDl~ml~~Ag~~i  167 (203)
T TIGR02137       136 SVIAFKSL----Y---YRVIAAGDSY----------------NDTTMLSEAHAGI  167 (203)
T ss_pred             HHHHHHhh----C---CCEEEEeCCH----------------HHHHHHHhCCCCE
Confidence            55555542    2   3799999999                8999999999997

This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).

>TIGR01684 viral_ppase viral phosphatase

Probab=98.71  E-value=5.8e-08  Score=91.62  Aligned_cols=86  Identities=16%  Similarity=0.244  Sum_probs=66.9

Q ss_pred             CCCCCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHH
Q psy4598          20 DVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKI   99 (369)
Q Consensus        20 ~~~~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~   99 (369)
                      ..-+..|+++|||||||+....         .-+.-.|++.++|++|+++|++++|+||.+            +..+...
T Consensus       121 ~~~~~~kvIvFDLDgTLi~~~~---------~v~irdPgV~EaL~~LkekGikLaIaTS~~------------Re~v~~~  179 (301)
T TIGR01684       121 KVFEPPHVVVFDLDSTLITDEE---------PVRIRDPRIYDSLTELKKRGCILVLWSYGD------------RDHVVES  179 (301)
T ss_pred             cccccceEEEEecCCCCcCCCC---------ccccCCHHHHHHHHHHHHCCCEEEEEECCC------------HHHHHHH
Confidence            3445679999999999997642         111226999999999999999999999943            3455678


Q ss_pred             HHHcCCC--eEEEEecCCCCCCCCchhHH
Q psy4598         100 IKSLNVP--VQMFVATQYDRYRKPVPGMW  126 (369)
Q Consensus       100 l~~l~i~--~~~~~~~~~~~~rKP~~gm~  126 (369)
                      ++.+|+.  |++++|.++...-||.|...
T Consensus       180 L~~lGLd~YFdvIIs~Gdv~~~kp~~e~~  208 (301)
T TIGR01684       180 MRKVKLDRYFDIIISGGHKAEEYSTMSTE  208 (301)
T ss_pred             HHHcCCCcccCEEEECCccccCCCCcccc
Confidence            8999995  78889988888888877443

These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.

>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=98.70  E-value=1e-07  Score=98.74  Aligned_cols=96  Identities=11%  Similarity=0.143  Sum_probs=70.6

Q ss_pred             ccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch------------------hHHHHHHHHHHHHhCCCcEEEeC
Q psy4598         269 AALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG------------------SWQKCVSVMKAALDSGLSVVVDN  330 (369)
Q Consensus       269 ~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~------------------~~~~~~~~~~~~l~~g~~vIiD~  330 (369)
                      |.+.+.|+|+|+|||||||+++.|++.+++.+++.|.+-                  .|+++...+.+.+......||.+
T Consensus         3 ~~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~~g~si~eif~~~Ge~~FR~~E~~~l~~~~~~~~~VIs~   82 (542)
T PRK14021          3 PTRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIEREIGMSIPSYFEEYGEPAFREVEADVVADMLEDFDGIFSL   82 (542)
T ss_pred             CCCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEC
Confidence            445578999999999999999999999999999999861                  24455555444333233556654


Q ss_pred             CC---CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         331 TN---PDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       331 tn---~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      ..   ..++.|..+.++.++.+   .+||+++|.+.+.+|
T Consensus        83 GGG~v~~~~n~~~L~~~~~~~g---~vv~L~~~~~~l~~R  119 (542)
T PRK14021         83 GGGAPMTPSTQHALASYIAHGG---RVVYLDADPKEAMER  119 (542)
T ss_pred             CCchhCCHHHHHHHHHHHhcCC---EEEEEECCHHHHHHH
Confidence            32   35666776666667666   589999999999987

>PRK14529 adenylate kinase; Provisional

Probab=98.68  E-value=1.2e-07  Score=87.14  Aligned_cols=94  Identities=17%  Similarity=0.305  Sum_probs=69.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhccCCcEEEeCCc-chh-----------H------------HHHHHHHHHHHhC--CCcEEE
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRDT-LGS-----------W------------QKCVSVMKAALDS--GLSVVV  328 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~~~~~i~~D~-~~~-----------~------------~~~~~~~~~~l~~--g~~vIi  328 (369)
                      |+|.|+|||||||+++.|++.++..+|+..+ ++.           .            +.....+.+.+..  ...+|+
T Consensus         3 I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t~lg~~i~~~i~~G~lvpdei~~~lv~~~l~~~~~~g~iL   82 (223)
T PRK14529          3 ILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGTELGKKAKEYIDRGDLVPDDITIPMILETLKQDGKNGWLL   82 (223)
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCChHHHHHHHHHhccCcchHHHHHHHHHHHHhccCCCcEEE
Confidence            7889999999999999999999999997543 321           0            1122334444432  457999


Q ss_pred             eCCCCCHHHHHHHHHHHHhcCCeE-EEEEEeCCHHHHHHHc
Q psy4598         329 DNTNPDKESRHRYIEAAKQHGVRC-IAVHMNISKEHAKHNI  368 (369)
Q Consensus       329 D~tn~~~~~r~~~~~la~~~~~~v-~~v~l~~~~e~~~~Rn  368 (369)
                      |+.-.+..+...+.+.....+..+ .++++++|.+++.+|-
T Consensus        83 DGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl  123 (223)
T PRK14529         83 DGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRI  123 (223)
T ss_pred             eCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHh
Confidence            999988888888877666655443 5899999999999883

>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A

Probab=98.67  E-value=1.6e-07  Score=75.63  Aligned_cols=88  Identities=24%  Similarity=0.366  Sum_probs=56.5

Q ss_pred             EEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCe
Q psy4598          28 ASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPV  107 (369)
Q Consensus        28 ~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~  107 (369)
                      ++||+||||+...             .++||+.++|+.|+++|++++++||.+..     +.+++    ...|+.+|+++
T Consensus         1 ~l~D~dGvl~~g~-------------~~ipga~e~l~~L~~~g~~~~~lTNns~~-----s~~~~----~~~L~~~Gi~~   58 (101)
T PF13344_consen    1 FLFDLDGVLYNGN-------------EPIPGAVEALDALRERGKPVVFLTNNSSR-----SREEY----AKKLKKLGIPV   58 (101)
T ss_dssp             EEEESTTTSEETT-------------EE-TTHHHHHHHHHHTTSEEEEEES-SSS------HHHH----HHHHHHTTTT-
T ss_pred             CEEeCccEeEeCC-------------CcCcCHHHHHHHHHHcCCCEEEEeCCCCC-----CHHHH----HHHHHhcCcCC
Confidence            5899999999743             27999999999999999999999997642     33333    34457899876


Q ss_pred             E--EEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCcc
Q psy4598         108 Q--MFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAA  151 (369)
Q Consensus       108 ~--~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~  151 (369)
                      +  -++++        .....+++.++      -....++++|-..
T Consensus        59 ~~~~i~ts--------~~~~~~~l~~~------~~~~~v~vlG~~~   90 (101)
T PF13344_consen   59 DEDEIITS--------GMAAAEYLKEH------KGGKKVYVLGSDG   90 (101)
T ss_dssp             -GGGEEEH--------HHHHHHHHHHH------TTSSEEEEES-HH
T ss_pred             CcCEEECh--------HHHHHHHHHhc------CCCCEEEEEcCHH
Confidence            3  23322        12233444442      2356788888764

...

>PRK04040 adenylate kinase; Provisional

Probab=98.66  E-value=1.5e-07  Score=84.47  Aligned_cols=36  Identities=28%  Similarity=0.535  Sum_probs=32.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC--CcEEEeCCcc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL--NYTTVNRDTL  306 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~--~~~~i~~D~~  306 (369)
                      +|.+|+++|+|||||||+++.|++.+  ++.+++.+++
T Consensus         1 ~~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~   38 (188)
T PRK04040          1 MMKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDV   38 (188)
T ss_pred             CCeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchH
Confidence            46799999999999999999999998  7888888775

>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase)

Probab=98.66  E-value=8.6e-08  Score=86.37  Aligned_cols=88  Identities=20%  Similarity=0.261  Sum_probs=71.7

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCchhHHHHHHHHhc
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKN  134 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~  134 (369)
                      ++|++.++|++|++.|++++|+|+-            -......+.+.+|++-..+++-..   .||.+.+|..+++.+ 
T Consensus       128 ~~~~~~~~l~~L~~~Gi~~~i~TGD------------~~~~a~~~~~~lgi~~~~v~a~~~---~kP~~k~~~~~i~~l-  191 (215)
T PF00702_consen  128 LRPGAKEALQELKEAGIKVAILTGD------------NESTASAIAKQLGIFDSIVFARVI---GKPEPKIFLRIIKEL-  191 (215)
T ss_dssp             BHTTHHHHHHHHHHTTEEEEEEESS------------EHHHHHHHHHHTTSCSEEEEESHE---TTTHHHHHHHHHHHH-
T ss_pred             chhhhhhhhhhhhccCcceeeeecc------------cccccccccccccccccccccccc---ccccchhHHHHHHHH-
Confidence            5799999999999999999999972            234566778899984222222111   799999999999996 


Q ss_pred             CCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCC
Q psy4598         135 GDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLN  177 (369)
Q Consensus       135 ~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~G  177 (369)
                         ++++++++||||..                .|+.+++++|
T Consensus       192 ---~~~~~~v~~vGDg~----------------nD~~al~~Ag  215 (215)
T PF00702_consen  192 ---QVKPGEVAMVGDGV----------------NDAPALKAAG  215 (215)
T ss_dssp             ---TCTGGGEEEEESSG----------------GHHHHHHHSS
T ss_pred             ---hcCCCEEEEEccCH----------------HHHHHHHhCc
Confidence               67889999999999                8999999987

This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....

>PRK14526 adenylate kinase; Provisional

Probab=98.60  E-value=2.6e-07  Score=84.35  Aligned_cols=90  Identities=14%  Similarity=0.275  Sum_probs=63.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh-----------HH------------HHHHHHHHHHh---CCCcEE
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS-----------WQ------------KCVSVMKAALD---SGLSVV  327 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~-----------~~------------~~~~~~~~~l~---~g~~vI  327 (369)
                      |+|.|+|||||||+++.|++.+++.+++.+++ +.           .+            ...+.+.+.+.   ....+|
T Consensus         3 i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t~~g~~i~~~~~~g~lvpd~~~~~lv~~~l~~~~~~~g~i   82 (211)
T PRK14526          3 LVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNSTPLGKEIKQIVENGQLVPDSITIKIVEDKINTIKNNDNFI   82 (211)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCChhhHHHHHHHHcCccCChHHHHHHHHHHHhcccccCcEE
Confidence            67899999999999999999999999997776 21           00            11233334433   245799


Q ss_pred             EeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         328 VDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       328 iD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      +|+...+..+...+.+...    ...++++++|.+++.+|-
T Consensus        83 lDGfPR~~~Qa~~l~~~~~----~~~vi~l~~~~~~~~~Rl  119 (211)
T PRK14526         83 LDGFPRNINQAKALDKFLP----NIKIINFLIDEELLIKRL  119 (211)
T ss_pred             EECCCCCHHHHHHHHHhcC----CCEEEEEECCHHHHHHHH
Confidence            9988777666655544321    235788899999998883

>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family

Probab=98.60  E-value=1.9e-07  Score=87.99  Aligned_cols=107  Identities=19%  Similarity=0.290  Sum_probs=73.9

Q ss_pred             CCceEEEEecCCceeecCC--------CCCCCCCccccc--------cccccHHHHHHHHHHCCcEEEEEecCCCcCCCC
Q psy4598          23 NSAKIASFDLDGTLITTKS--------GKVFPVDTHDWK--------LLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKK   86 (369)
Q Consensus        23 ~~~k~~~fDlDgTLi~~~s--------g~~~~~~~~d~~--------~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~   86 (369)
                      ....+++||+|+|++....        |..|  +..+|.        .++||+.+.|+.|+++|++++|+||.+.     
T Consensus        73 ~kp~AVV~DIDeTvLdns~y~~~~~~~~~~~--~~~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~-----  145 (266)
T TIGR01533        73 DKKYAIVLDLDETVLDNSPYQGYQVLNNKPF--DPETWDKWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNRSE-----  145 (266)
T ss_pred             CCCCEEEEeCccccccChHHHHHHhcCCCcC--CHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCCCc-----
Confidence            4567999999999986541        2222  234552        2589999999999999999999999531     


Q ss_pred             CCHHHHHHHHHHHHHHcCCCe---EEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCcc
Q psy4598          87 MSTRDFQAKAEKIIKSLNVPV---QMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAA  151 (369)
Q Consensus        87 ~~~~~~~~~i~~~l~~l~i~~---~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~  151 (369)
                          .........++.+|++.   +.++.- .+  ++|++.-.+.+.+.+    +|    .+||||+.
T Consensus       146 ----~~~~~T~~~Lkk~Gi~~~~~d~lllr-~~--~~~K~~rr~~I~~~y----~I----vl~vGD~~  198 (266)
T TIGR01533       146 ----KEKAATLKNLKRFGFPQADEEHLLLK-KD--KSSKESRRQKVQKDY----EI----VLLFGDNL  198 (266)
T ss_pred             ----chHHHHHHHHHHcCcCCCCcceEEeC-CC--CCCcHHHHHHHHhcC----CE----EEEECCCH
Confidence                22334556778899863   333333 22  356667777776665    45    89999998

which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.

>PLN02459 probable adenylate kinase

Probab=98.59  E-value=4.2e-07  Score=85.13  Aligned_cols=92  Identities=14%  Similarity=0.197  Sum_probs=65.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh-----------------------HHHHHHHHHHHHhC-----C
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS-----------------------WQKCVSVMKAALDS-----G  323 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~-----------------------~~~~~~~~~~~l~~-----g  323 (369)
                      ..|+|.|+|||||||+|+.|++.+++.+|+..++ +.                       -+.+...+.+.+..     .
T Consensus        30 ~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~~~~~~~  109 (261)
T PLN02459         30 VNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEAGEEEGE  109 (261)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhcccccCC
Confidence            3477789999999999999999999999997665 21                       01122333444432     3


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         324 LSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       324 ~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      ..+|+|+.-.+..+...+...   .. .-.+++|++|.+++.+|-
T Consensus       110 ~g~iLDGFPRt~~Qa~~Le~~---~~-id~Vi~L~v~d~~l~~Rl  150 (261)
T PLN02459        110 SGFILDGFPRTVRQAEILEGV---TD-IDLVVNLKLREEVLVEKC  150 (261)
T ss_pred             ceEEEeCCCCCHHHHHHHHhc---CC-CCEEEEEECCHHHHHHHh
Confidence            579999998777666666443   22 235899999999998873

>PRK12337 2-phosphoglycerate kinase; Provisional

Probab=98.59  E-value=4e-07  Score=91.22  Aligned_cols=90  Identities=19%  Similarity=0.278  Sum_probs=69.8

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccCCcE-EEeCCcchh---------------------HHH----------------
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPLNYT-TVNRDTLGS---------------------WQK----------------  311 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~~~~-~i~~D~~~~---------------------~~~----------------  311 (369)
                      ..|.+|+++|+|||||||++..|+..+++. +|+.|.++.                     |..                
T Consensus       253 k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~~~~~  332 (475)
T PRK12337        253 PRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEPTRAE  332 (475)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCcccccccccchHH
Confidence            358999999999999999999999999986 679998631                     111                


Q ss_pred             ---------------HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHH
Q psy4598         312 ---------------CVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEH  363 (369)
Q Consensus       312 ---------------~~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~  363 (369)
                                     +...+..++..|.+||||+.++.+..+.    .+...+..+..+.+.++.+.
T Consensus       333 vi~Gf~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~----~~~~~~~~~i~flv~isdee  395 (475)
T PRK12337        333 VLRGFRDQVQQVAVGLGAIQERSAQEGTSLVLEGVHLVPGYLR----HPYQAGALVVPMLVTLPDEA  395 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCHHHHH----HHHhcCCceEEEEEEECCHH
Confidence                           2344567789999999999999987754    45566777777777777653

>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.59  E-value=1.2e-07  Score=81.23  Aligned_cols=97  Identities=24%  Similarity=0.336  Sum_probs=76.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC--CcEEEeCCcch--------------hHHHHHHHHHHHHhCCCcEEEeCCCCC
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL--NYTTVNRDTLG--------------SWQKCVSVMKAALDSGLSVVVDNTNPD  334 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~--~~~~i~~D~~~--------------~~~~~~~~~~~~l~~g~~vIiD~tn~~  334 (369)
                      ||++-++.|+.||||||+...+...+  +..++|+|.+.              .-+........+++.+.++..+.|...
T Consensus         1 m~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i~p~~p~~~~i~A~r~ai~~i~~~I~~~~~F~~ETtLS~   80 (187)
T COG4185           1 MKRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQISPDNPTSAAIQAARVAIDRIARLIDLGRPFIAETTLSG   80 (187)
T ss_pred             CceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhhcCCCCchHHHHHHHHHHHHHHHHHHHcCCCcceEEeecc
Confidence            57889999999999999988877654  67899999983              124455556667789999999999865


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEEEeCCH-HHHHHHc
Q psy4598         335 KESRHRYIEAAKQHGVRCIAVHMNISK-EHAKHNI  368 (369)
Q Consensus       335 ~~~r~~~~~la~~~~~~v~~v~l~~~~-e~~~~Rn  368 (369)
                      ++ ..++++-|++.|+-+.+.|+-++. |.+.+|-
T Consensus        81 ~s-~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERV  114 (187)
T COG4185          81 PS-ILELIKTAKAAGFYIVLNYIVIDSVELAVERV  114 (187)
T ss_pred             ch-HHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHH
Confidence            54 455667799999999988887664 6777764

>PLN02199 shikimate kinase

Probab=98.58  E-value=2.4e-07  Score=87.90  Aligned_cols=91  Identities=25%  Similarity=0.288  Sum_probs=63.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch-------------------hHHHHHHHHHHHHhCCCcEEEeCCCC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG-------------------SWQKCVSVMKAALDSGLSVVVDNTNP  333 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~-------------------~~~~~~~~~~~~l~~g~~vIiD~tn~  333 (369)
                      ..|+|+|++||||||+++.|++.+++.+|+.|.+-                   .|+.+...+...+.....+||.+...
T Consensus       103 ~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~G~sI~eIf~~~GE~~FR~~E~e~L~~L~~~~~~VIStGGG  182 (303)
T PLN02199        103 RSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMNGTSVAEIFVHHGENFFRGKETDALKKLSSRYQVVVSTGGG  182 (303)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhcCCCHHHHHHHhCHHHHHHHHHHHHHHHHhcCCEEEECCCc
Confidence            46899999999999999999999999999999852                   13344444444444445677765442


Q ss_pred             CHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         334 DKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       334 ~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                       .-.+.....+.+ .|   .+||+++|.|...+|-
T Consensus       183 -~V~~~~n~~~L~-~G---~vV~Ldas~E~l~~RL  212 (303)
T PLN02199        183 -AVIRPINWKYMH-KG---ISIWLDVPLEALAHRI  212 (303)
T ss_pred             -ccCCHHHHHHHh-CC---eEEEEECCHHHHHHHH
Confidence             222333333333 34   4899999999999873

>PRK12338 hypothetical protein; Provisional

Probab=98.57  E-value=5.6e-07  Score=86.56  Aligned_cols=93  Identities=15%  Similarity=0.177  Sum_probs=65.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEE-eCCcchh---------------------HH-------------------
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTV-NRDTLGS---------------------WQ-------------------  310 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i-~~D~~~~---------------------~~-------------------  310 (369)
                      |.+|+++|+|||||||+|+.|++.+++.++ +.|.++.                     |.                   
T Consensus         4 p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~~gf   83 (319)
T PRK12338          4 PYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELICAGF   83 (319)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHHHHH
Confidence            579999999999999999999999998877 6666531                     11                   


Q ss_pred             ---------HHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         311 ---------KCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       311 ---------~~~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                               .+...+..++..|.++||++..+.+.......   ......+.++++..+.+..++|
T Consensus        84 ~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~---~~~~~~v~~~vl~~dee~h~~R  146 (319)
T PRK12338         84 EEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQ---FEENASIHFFILSADEEVHKER  146 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhhh---hcccCceEEEEEECCHHHHHHH
Confidence                     01123344567889999999998776554311   1123456777777777777665

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=98.54  E-value=2.4e-07  Score=78.70  Aligned_cols=84  Identities=15%  Similarity=0.227  Sum_probs=56.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh---------------HHHHHHHHHHHHhCCCcEEEeCCCCCHHHH
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS---------------WQKCVSVMKAALDSGLSVVVDNTNPDKESR  338 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~---------------~~~~~~~~~~~l~~g~~vIiD~tn~~~~~r  338 (369)
                      +|+++|+|||||||+|+.|++.+++.+++.|.+..               ...........+..+..+|+|+......  
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~~e~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~Vidg~~~~~~--   78 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIRTEEVGKLASEVAAIPEVRKALDERQRELAKKPGIVLEGRDIGTV--   78 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCceeccccCCHHHHHHHHHHhcccHhHHHHHHHHHHHHhhCCCEEEEeeeeeeE--
Confidence            47999999999999999999999999999995521               1111112222234455799997763211  


Q ss_pred             HHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         339 HRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       339 ~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                           +   .......|++++|+++..+|
T Consensus        79 -----~---~~~~~~~i~l~~~~~~r~~R   99 (147)
T cd02020          79 -----V---FPDADLKIFLTASPEVRAKR   99 (147)
T ss_pred             -----E---cCCCCEEEEEECCHHHHHHH
Confidence                 0   11123579999999988766

>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []

Probab=98.54  E-value=5.5e-07  Score=77.97  Aligned_cols=76  Identities=24%  Similarity=0.352  Sum_probs=64.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCC-cEEEeCCcchh--HHHHHHHHHHHH--hCCCcEEEeCCCCCHHHHHHHHHHHHhc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLN-YTTVNRDTLGS--WQKCVSVMKAAL--DSGLSVVVDNTNPDKESRHRYIEAAKQH  348 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~-~~~i~~D~~~~--~~~~~~~~~~~l--~~g~~vIiD~tn~~~~~r~~~~~la~~~  348 (369)
                      +|+=++.+||||||++.+|...++ |-|+..|++..  ..++.+.+.+.|  .....||.|-.|....+|+++.+..++.
T Consensus         1 vlvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI~~k~~~~f~~~~l~~L~~~~~~vViaDRNNh~~reR~ql~~~~~~~   80 (168)
T PF08303_consen    1 VLVPIATIGCGKTTVALALSNLFGEWGHVQNDNITGKRKPKFIKAVLELLAKDTHPVVIADRNNHQKRERKQLFEDVSQL   80 (168)
T ss_pred             CEeeecCCCcCHHHHHHHHHHHcCCCCccccCCCCCCCHHHHHHHHHHHHhhCCCCEEEEeCCCchHHHHHHHHHHHHHh
Confidence            356689999999999999999999 99999999965  566777777777  5556788999999999999998877764


Q ss_pred             C
Q psy4598         349 G  349 (369)
Q Consensus       349 ~  349 (369)
                      .
T Consensus        81 ~   81 (168)
T PF08303_consen   81 K   81 (168)
T ss_pred             c
Confidence            3

Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation

>PRK08233 hypothetical protein; Provisional

Probab=98.53  E-value=5.6e-07  Score=79.38  Aligned_cols=88  Identities=9%  Similarity=0.162  Sum_probs=53.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCC-cEEEeCCcch---------h------------HHHHHHHHHHHHhCC--CcEE
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLN-YTTVNRDTLG---------S------------WQKCVSVMKAALDSG--LSVV  327 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~-~~~i~~D~~~---------~------------~~~~~~~~~~~l~~g--~~vI  327 (369)
                      +.+|.+.|+|||||||+|+.|++.++ ...+..|.+.         .            .+.+.+.+...++..  ..||
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vi   82 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGANYSEWVLTPLIKDIQELIAKSNVDYII   82 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEEcccCchhhhhhhhccCChhhhhhHHHHHHHHHHHcCCCceEEE
Confidence            36889999999999999999999874 3344444331         1            112233334444333  3456


Q ss_pred             EeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         328 VDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       328 iD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      +|....  .....+...+   .   .+|++++|.+++++|
T Consensus        83 vd~~~~--~~~~~~~~~~---d---~~i~l~~~~~~~~~R  114 (182)
T PRK08233         83 VDYPFA--YLNSEMRQFI---D---VTIFIDTPLDIAMAR  114 (182)
T ss_pred             Eeeehh--hccHHHHHHc---C---EEEEEcCCHHHHHHH
Confidence            675432  1112222222   1   689999999998776

>PRK04182 cytidylate kinase; Provisional

Probab=98.53  E-value=1.5e-07  Score=82.73  Aligned_cols=85  Identities=16%  Similarity=0.244  Sum_probs=56.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh-----------H----------HH-HHHHHHHHHhCCCcEEEeC
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS-----------W----------QK-CVSVMKAALDSGLSVVVDN  330 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~-----------~----------~~-~~~~~~~~l~~g~~vIiD~  330 (369)
                      +|+|+|+|||||||+++.|++.+++.+++.|++ +.           +          .. +..........+.++|+|.
T Consensus         2 ~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vi~g   81 (180)
T PRK04182          2 IITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAKERGMSLEEFNKYAEEDPEIDKEIDRRQLEIAEKEDNVVLEG   81 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHHHcCCCHHHHHHHhhcCchHHHHHHHHHHHHHhcCCCEEEEE
Confidence            689999999999999999999999999997543 11           0          01 1122222222556788887


Q ss_pred             CCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         331 TNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       331 tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      ....      +  +.+  ......|++++|.+++.+|.
T Consensus        82 ~~~~------~--~~~--~~~~~~V~l~a~~e~~~~Rl  109 (180)
T PRK04182         82 RLAG------W--MAK--DYADLKIWLKAPLEVRAERI  109 (180)
T ss_pred             eecc------e--Eec--CCCCEEEEEECCHHHHHHHH
Confidence            5421      1  111  12446789999999998884

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.48  E-value=5e-07  Score=95.91  Aligned_cols=96  Identities=16%  Similarity=0.276  Sum_probs=68.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcE-----EEeCCcchh-------------------HHHHHHHH---HH-HHhCCC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYT-----TVNRDTLGS-------------------WQKCVSVM---KA-ALDSGL  324 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~-----~i~~D~~~~-------------------~~~~~~~~---~~-~l~~g~  324 (369)
                      .+|+|+|+||+||||+|+.|++.+++.     +++.+.++.                   ++.....+   .. .++.|.
T Consensus       216 ~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~~~~~~~~~~~~~~e~~~~~~~~~d~~~~v~~~Gg  295 (664)
T PTZ00322        216 LIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERRGGAVSSPTGAAEVEFRIAKAIAHDMTTFICKTDG  295 (664)
T ss_pred             eeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            589999999999999999999987444     444433320                   11111111   11 234578


Q ss_pred             cEEEeCCCCCHHHHHHHHHHHHhcCC----eEEEEEEeCCHHHHHHHc
Q psy4598         325 SVVVDNTNPDKESRHRYIEAAKQHGV----RCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       325 ~vIiD~tn~~~~~r~~~~~la~~~~~----~v~~v~l~~~~e~~~~Rn  368 (369)
                      .+|+|++|.+...|..+.+.+++.+.    .+.++..-|+.+...++|
T Consensus       296 vaI~DatN~t~~rR~~~~~~~~~~~~~~~~~vifle~vc~~~~~i~~n  343 (664)
T PTZ00322        296 VAVLDGTNTTHARRMALLRAIRETGLIRMTRVVFVEVVNNNSETIRRN  343 (664)
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHcCCCccCcEEEEEEeCCCHHHHHHH
Confidence            99999999999999999898888875    677777778877666665

>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=98.47  E-value=6.9e-07  Score=76.93  Aligned_cols=83  Identities=18%  Similarity=0.228  Sum_probs=58.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh---------------------HHHHHHH-HHHHHhCCCcEEEeC
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS---------------------WQKCVSV-MKAALDSGLSVVVDN  330 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~---------------------~~~~~~~-~~~~l~~g~~vIiD~  330 (369)
                      +|.+.|+|||||||+|+.|++.++..++++-.+ +.                     ++..... ..+.+. ..++|++.
T Consensus         2 ~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~p~iD~~iD~rq~e~a~-~~nvVleg   80 (179)
T COG1102           2 VITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARERGMSLEEFSRYAEEDPEIDKEIDRRQKELAK-EGNVVLEG   80 (179)
T ss_pred             EEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHHcCCCHHHHHHHHhcCchhhHHHHHHHHHHHH-cCCeEEhh
Confidence            588999999999999999999999999996543 31                     2222222 333344 66888886


Q ss_pred             CCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         331 TNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       331 tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      -.      .-|+.  +  .+.-..||+.+|.++-.+|
T Consensus        81 rL------A~Wi~--k--~~adlkI~L~Apl~vRa~R  107 (179)
T COG1102          81 RL------AGWIV--R--EYADLKIWLKAPLEVRAER  107 (179)
T ss_pred             hh------HHHHh--c--cccceEEEEeCcHHHHHHH
Confidence            54      22332  2  4445679999999987776

>PRK08356 hypothetical protein; Provisional

Probab=98.41  E-value=2.7e-06  Score=76.57  Aligned_cols=87  Identities=8%  Similarity=0.130  Sum_probs=58.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-----hh------------------------HHH----------HH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-----GS------------------------WQK----------CV  313 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-----~~------------------------~~~----------~~  313 (369)
                      .+|+++|+|||||||+|+.|.+ .++.+|+..+.     +.                        +..          ..
T Consensus         6 ~~i~~~G~~gsGK~t~a~~l~~-~g~~~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG~~~~~   84 (195)
T PRK08356          6 MIVGVVGKIAAGKTTVAKFFEE-KGFCRVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYGEDILI   84 (195)
T ss_pred             EEEEEECCCCCCHHHHHHHHHH-CCCcEEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcCcHHHH
Confidence            5789999999999999999964 78878887642     00                        000          01


Q ss_pred             HHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         314 SVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       314 ~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      +.+.+.+.....+|+|+. .+..++..+...    +  ..++++++|.+++.+|
T Consensus        85 ~~~~~~~~~~~~ividG~-r~~~q~~~l~~~----~--~~vi~l~~~~~~~~~R  131 (195)
T PRK08356         85 RLAVDKKRNCKNIAIDGV-RSRGEVEAIKRM----G--GKVIYVEAKPEIRFER  131 (195)
T ss_pred             HHHHHHhccCCeEEEcCc-CCHHHHHHHHhc----C--CEEEEEECCHHHHHHH
Confidence            223333333446889977 676666665432    2  2578999999998887

>smart00775 LNS2 LNS2 domain

Probab=98.40  E-value=4.4e-06  Score=72.75  Aligned_cols=122  Identities=19%  Similarity=0.344  Sum_probs=73.2

Q ss_pred             EEEEecCCceeecCC-CCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHH---
Q psy4598          27 IASFDLDGTLITTKS-GKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKS---  102 (369)
Q Consensus        27 ~~~fDlDgTLi~~~s-g~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~---  102 (369)
                      ++++|+||||..+.- |.....-..+|  ..|++.+++++|+++||+++++|.-+         ..........+..   
T Consensus         1 iVisDIDGTL~~sd~~~~~~~~~~~~~--~~~~~~~a~~~l~~~G~~ivy~TGRp---------~~~~~~t~~~l~~~~~   69 (157)
T smart00775        1 IVISDIDGTITKSDVLGHVVPIIGKDW--THPGVAKLYRDIQNNGYKILYLTARP---------IGQADRTRSYLSQIKQ   69 (157)
T ss_pred             CEEEecCCCCcccccccccccccccCc--CCHHHHHHHHHHHHcCCeEEEEcCCc---------HHHHHHHHHHHHHhhh
Confidence            579999999997641 11122222344  58999999999999999999999732         1111222333444   


Q ss_pred             --cCCCeE-EEEecCCC--------CCCCC---chhHHHHHHHHhcCCccccCCccEE--eeCccccccccCCCCCCCCC
Q psy4598         103 --LNVPVQ-MFVATQYD--------RYRKP---VPGMWEYLSQEKNGDLAIDISQSFY--AGDAAGRAANWAPKKKKDFA  166 (369)
Q Consensus       103 --l~i~~~-~~~~~~~~--------~~rKP---~~gm~~~~~~~~~~~~~i~~~~s~~--VGD~~gr~~~~~~~~~~d~s  166 (369)
                        .++|.. ++.+.+..        ..++|   +..+++.+.+.+    . ....-|+  +||+.               
T Consensus        70 ~~~~lp~g~li~~~g~~~~~~~~e~i~~~~~~~K~~~l~~i~~~~----~-~~~~~f~~~~gn~~---------------  129 (157)
T smart00775       70 DGHNLPHGPVLLSPDRLFAALHREVISKKPEVFKIACLRDIKSLF----P-PQGNPFYAGFGNRI---------------  129 (157)
T ss_pred             ccccCCCceEEEcCCcchhhhhcccccCCHHHHHHHHHHHHHHhc----C-CCCCCEEEEeCCCc---------------
Confidence              346543 33333221        23555   445566655542    1 1133444  56666               


Q ss_pred             cccHHHHHhCCCCc
Q psy4598         167 CTDHLFAFNLNLAF  180 (369)
Q Consensus       167 ~~D~~~A~n~Gi~f  180 (369)
                       +|+.+=.++||+-
T Consensus       130 -~D~~~y~~~gi~~  142 (157)
T smart00775      130 -TDVISYSAVGIPP  142 (157)
T ss_pred             -hhHHHHHHcCCCh
Confidence             8999999999974

This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.40  E-value=1.6e-06  Score=76.60  Aligned_cols=89  Identities=17%  Similarity=0.251  Sum_probs=56.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCC----cEEEeCCc----------c-----hhHHH-------------------HHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLN----YTTVNRDT----------L-----GSWQK-------------------CVS  314 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~----~~~i~~D~----------~-----~~~~~-------------------~~~  314 (369)
                      .+|+++|+|||||||+++.|+..++    ..++.++.          +     ..+..                   ...
T Consensus         2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~   81 (179)
T TIGR02322         2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYGIPA   81 (179)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCccccChH
Confidence            4789999999999999999988653    22221110          0     01111                   112


Q ss_pred             HHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         315 VMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       315 ~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      .+...+..|..||+|...   ..+..+    ++....+.++|+++|.+++.+|.
T Consensus        82 ~i~~~~~~g~~vv~~g~~---~~~~~~----~~~~~~~~~i~l~~~~~~~~~Rl  128 (179)
T TIGR02322        82 EIDQWLEAGDVVVVNGSR---AVLPEA----RQRYPNLLVVNITASPDVLAQRL  128 (179)
T ss_pred             HHHHHHhcCCEEEEECCH---HHHHHH----HHHCCCcEEEEEECCHHHHHHHH
Confidence            344566788889998752   223222    23333667899999999999884

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed

Probab=98.40  E-value=1.4e-06  Score=84.07  Aligned_cols=94  Identities=14%  Similarity=0.164  Sum_probs=59.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh------------------HHHHHHH-HHHHHhCCCcEEEeCC
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS------------------WQKCVSV-MKAALDSGLSVVVDNT  331 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~------------------~~~~~~~-~~~~l~~g~~vIiD~t  331 (369)
                      +...|+|+|+|||||||+++.|++.+++.+++.|....                  |+..... +.+.+.....+||...
T Consensus       132 ~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D~~i~~~~G~~i~ei~~~~G~~~fr~~e~~~l~~ll~~~~~~VI~~G  211 (309)
T PRK08154        132 RRRRIALIGLRGAGKSTLGRMLAARLGVPFVELNREIEREAGLSVSEIFALYGQEGYRRLERRALERLIAEHEEMVLATG  211 (309)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHHHHHHHHhCCCHHHHHHHHCHHHHHHHHHHHHHHHHhhCCCEEEECC
Confidence            34689999999999999999999999999998886521                  2222222 2333333334666554


Q ss_pred             CCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         332 NPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       332 n~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      ......-..+..+.+    ...+||+.+|.+.+.+|-
T Consensus       212 gg~v~~~~~~~~l~~----~~~~V~L~a~~e~~~~Rl  244 (309)
T PRK08154        212 GGIVSEPATFDLLLS----HCYTVWLKASPEEHMARV  244 (309)
T ss_pred             CchhCCHHHHHHHHh----CCEEEEEECCHHHHHHHH
Confidence            321111111212222    235899999999998874

>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2

Probab=98.39  E-value=7.5e-07  Score=77.48  Aligned_cols=81  Identities=20%  Similarity=0.227  Sum_probs=55.7

Q ss_pred             CCCcHHHHHHHHhccCCcEEEeCCcch------------------hHHHHHHHHHHHHhCCCcEEEeCCCC---CHHHHH
Q psy4598         281 QGSGKSSFVSTYLKPLNYTTVNRDTLG------------------SWQKCVSVMKAALDSGLSVVVDNTNP---DKESRH  339 (369)
Q Consensus       281 pGSGKSTla~~L~~~~~~~~i~~D~~~------------------~~~~~~~~~~~~l~~g~~vIiD~tn~---~~~~r~  339 (369)
                      |||||||+++.|++.+++.+++.|.+-                  .|+.+...+...+......||.+...   .++.++
T Consensus         1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~~g~si~~i~~~~G~~~fr~~E~~~l~~l~~~~~~VIa~GGG~~~~~~~~~   80 (158)
T PF01202_consen    1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEERTGMSISEIFAEEGEEAFRELESEALRELLKENNCVIACGGGIVLKEENRE   80 (158)
T ss_dssp             TTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEEEE-TTGGGSHHHHH
T ss_pred             CCCcHHHHHHHHHHHhCCCccccCHHHHHHhCCcHHHHHHcCChHHHHHHHHHHHHHHhccCcEEEeCCCCCcCcHHHHH
Confidence            799999999999999999999999872                  24555555555555554777776332   444444


Q ss_pred             HHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         340 RYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       340 ~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      .+    ++.+   .+||++.+.+.+.+|.
T Consensus        81 ~L----~~~g---~vI~L~~~~~~l~~Rl  102 (158)
T PF01202_consen   81 LL----KENG---LVIYLDADPEELAERL  102 (158)
T ss_dssp             HH----HHHS---EEEEEE--HHHHHHHH
T ss_pred             HH----HhCC---EEEEEeCCHHHHHHHH
Confidence            43    3334   4899999999998873

7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....

>PHA03398 viral phosphatase superfamily protein; Provisional

Probab=98.39  E-value=1.1e-06  Score=83.19  Aligned_cols=73  Identities=18%  Similarity=0.295  Sum_probs=56.0

Q ss_pred             CCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHH
Q psy4598          23 NSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKS  102 (369)
Q Consensus        23 ~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~  102 (369)
                      .-.|+++|||||||+.+..         +-+.-.|++.++|++|+++|++++|+||.+            +..+..+++.
T Consensus       126 ~~~~~i~~D~D~TL~~~~~---------~v~irdp~V~EtL~eLkekGikLaIvTNg~------------Re~v~~~Le~  184 (303)
T PHA03398        126 EIPHVIVFDLDSTLITDEE---------PVRIRDPFVYDSLDELKERGCVLVLWSYGN------------REHVVHSLKE  184 (303)
T ss_pred             eeccEEEEecCCCccCCCC---------ccccCChhHHHHHHHHHHCCCEEEEEcCCC------------hHHHHHHHHH
Confidence            4568999999999997642         112236999999999999999999999943            2345678888


Q ss_pred             cCCC--eEEEEecCCC
Q psy4598         103 LNVP--VQMFVATQYD  116 (369)
Q Consensus       103 l~i~--~~~~~~~~~~  116 (369)
                      +|+.  |++++|.+..
T Consensus       185 lgL~~yFDvII~~g~i  200 (303)
T PHA03398        185 TKLEGYFDIIICGGRK  200 (303)
T ss_pred             cCCCccccEEEECCCc
Confidence            9885  7777776543

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=98.38  E-value=1.7e-07  Score=77.17  Aligned_cols=33  Identities=33%  Similarity=0.625  Sum_probs=31.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      +|+++|+|||||||+|+.|++.+++.+++.|++
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~~   33 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERLGFPVISMDDL   33 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCeEEEecce
Confidence            589999999999999999999999999999984

...

>TIGR02173 cyt_kin_arch cytidylate kinase, putative

Probab=98.37  E-value=1.5e-06  Score=75.84  Aligned_cols=85  Identities=14%  Similarity=0.273  Sum_probs=57.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh--------------H-------HH-HHHHHHHHHhCCCcEEEeC
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS--------------W-------QK-CVSVMKAALDSGLSVVVDN  330 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~--------------~-------~~-~~~~~~~~l~~g~~vIiD~  330 (369)
                      +|+++|+|||||||+|+.+++.+++.+++.|.+ +.              +       .. +...+.+....+..+|+|+
T Consensus         2 iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~Vi~g   81 (171)
T TIGR02173         2 IITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELAAKMGLDLIEFLNYAEENPEIDKKIDRRIHEIALKEKNVVLES   81 (171)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHHHHcCCCHHHHHHHHhcCcHHHHHHHHHHHHHHhcCCCEEEEe
Confidence            689999999999999999999999999998653 11              0       01 1111222333556888898


Q ss_pred             CCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         331 TNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       331 tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      ....      +.  .+. ... ..|++++|.+++.+|.
T Consensus        82 ~~~~------~~--~~~-~~d-~~v~v~a~~~~r~~R~  109 (171)
T TIGR02173        82 RLAG------WI--VRE-YAD-VKIWLKAPLEVRARRI  109 (171)
T ss_pred             cccc------ee--ecC-CcC-EEEEEECCHHHHHHHH
Confidence            6532      11  111 122 4789999999988874

Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.

>PRK14737 gmk guanylate kinase; Provisional

Probab=98.37  E-value=1.9e-06  Score=77.06  Aligned_cols=91  Identities=13%  Similarity=0.201  Sum_probs=57.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCc----------------------EEEeCCcchh-----------------HHH
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNY----------------------TTVNRDTLGS-----------------WQK  311 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~----------------------~~i~~D~~~~-----------------~~~  311 (369)
                      .+.+|+|+|||||||||+++.|.+..+-                      .+++.+.+..                 |-.
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YGt   82 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYGT   82 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeecC
Confidence            4689999999999999999999876521                      1222222210                 222


Q ss_pred             HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCC-HHHHHHH
Q psy4598         312 CVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNIS-KEHAKHN  367 (369)
Q Consensus       312 ~~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~-~e~~~~R  367 (369)
                      -.+.+...++.|+.+|+|-.   .   +.+..+.+.+.-.+.+|++.+| .++..+|
T Consensus        83 ~~~~i~~~~~~g~~~i~d~~---~---~g~~~l~~~~~~~~~~Ifi~pps~e~l~~R  133 (186)
T PRK14737         83 PKAFIEDAFKEGRSAIMDID---V---QGAKIIKEKFPERIVTIFIEPPSEEEWEER  133 (186)
T ss_pred             cHHHHHHHHHcCCeEEEEcC---H---HHHHHHHHhCCCCeEEEEEECCCHHHHHHH
Confidence            24557788899999999953   2   2333333333334467778775 5766665

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.36  E-value=2.2e-06  Score=75.70  Aligned_cols=89  Identities=17%  Similarity=0.200  Sum_probs=56.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeC----------------------Ccch-----------------hHHHHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNR----------------------DTLG-----------------SWQKCV  313 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~----------------------D~~~-----------------~~~~~~  313 (369)
                      ++|+|+|++||||||+++.|++..+..+++.                      +.+.                 .|....
T Consensus         2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~   81 (180)
T TIGR03263         2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGTPK   81 (180)
T ss_pred             cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCCcH
Confidence            4789999999999999999998653322221                      1110                 012224


Q ss_pred             HHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         314 SVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       314 ~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      ..+..++.+|..+|+|.+.   ..   ...+.+.....+.++++.++.+.+.+|
T Consensus        82 ~~i~~~~~~g~~vi~d~~~---~~---~~~~~~~~~~~~~i~~~~~~~e~~~~R  129 (180)
T TIGR03263        82 SPVEEALAAGKDVLLEIDV---QG---ARQVKKKFPDAVSIFILPPSLEELERR  129 (180)
T ss_pred             HHHHHHHHCCCeEEEECCH---HH---HHHHHHhCCCcEEEEEECCCHHHHHHH
Confidence            5677888999999999653   22   223333344445566667778888776

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>KOG4622|consensus

Probab=98.35  E-value=7.7e-07  Score=78.63  Aligned_cols=96  Identities=23%  Similarity=0.305  Sum_probs=73.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC------CcEEEeCCcch---------h-------HHHHHHHHHHHHh---------
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL------NYTTVNRDTLG---------S-------WQKCVSVMKAALD---------  321 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~------~~~~i~~D~~~---------~-------~~~~~~~~~~~l~---------  321 (369)
                      .++.++|.|+|||||+.+.+.-..      +.++++-|++.         .       +..-.+.+..++.         
T Consensus         2 ~LlaliGiPAaGKSs~c~~ilga~aaLrvrhi~hlcfDDFlmdaTpSaD~a~keqRgr~~~~iEk~ISaiqedtdwppqv   81 (291)
T KOG4622|consen    2 ALLALIGIPAAGKSSFCRKILGAHAALRVRHIEHLCFDDFLMDATPSADKAAKEQRGRFECHIEKCISAIQEDTDWPPQV   81 (291)
T ss_pred             ceeeeecCcccchhHHHHHHHHHHHHHHHHHHHhhhHHHHhhhcCcchhhhHHHHhchHHHHHHHHHHHHhcccCCCchh
Confidence            478899999999999999986542      46677778773         1       1111222222222         


Q ss_pred             ----------CC-CcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         322 ----------SG-LSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       322 ----------~g-~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                                .| +.+++|..+..+++|..+.++|+.+|+.+-.+|+..+..+|+++|
T Consensus        82 rrisssgdynsgrhiilcdD~FY~kSMR~k~~ki~kd~GciFG~Iflas~ide~LqaN  139 (291)
T KOG4622|consen   82 RRISSSGDYNSGRHIILCDDIFYLKSMRHKFQKIAKDHGCIFGIIFLASGIDEALQAN  139 (291)
T ss_pred             eeccccCCcCCCceEEEechHHHHHHhhhHHHHHHHHcCCeeeeeehhhhHHHHHHhc
Confidence                      23 356789999999999999999999999999999999999999988

>PRK00081 coaE dephospho-CoA kinase; Reviewed

Probab=98.35  E-value=1.5e-06  Score=78.33  Aligned_cols=35  Identities=23%  Similarity=0.465  Sum_probs=32.3

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      |+.+|.|+|++||||||+++.|.+ +++.+++.|.+
T Consensus         1 ~~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~   35 (194)
T PRK00081          1 MMLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAI   35 (194)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHH
Confidence            356899999999999999999998 89999999997

>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor

Probab=98.34  E-value=5.2e-06  Score=73.90  Aligned_cols=96  Identities=20%  Similarity=0.257  Sum_probs=59.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC---CcEEEeC---C------cchhH-----------------------HHHHHHHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL---NYTTVNR---D------TLGSW-----------------------QKCVSVMK  317 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~---~~~~i~~---D------~~~~~-----------------------~~~~~~~~  317 (369)
                      ++|++.|++||||||+++.|++.+   +..++..   +      .++.+                       ....+...
T Consensus         1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~   80 (200)
T cd01672           1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLLDPEDEKMDPRAELLLFAADRAQHVEEVIK   80 (200)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCCchHHHHHHHHhccCccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            378999999999999999999875   3322221   1      11110                       01112223


Q ss_pred             HHHhCCCcEEEeCCCCC------------HHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         318 AALDSGLSVVVDNTNPD------------KESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       318 ~~l~~g~~vIiD~tn~~------------~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      .++..|..||+|....+            ......+...+.....+..++++++|.+++.+|.
T Consensus        81 ~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~  143 (200)
T cd01672          81 PALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALNDLATGGLKPDLTILLDIDPEVGLARI  143 (200)
T ss_pred             HHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHH
Confidence            34567888999943321            2233444444444445668999999999999884

TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=98.33  E-value=1.9e-06  Score=77.20  Aligned_cols=33  Identities=21%  Similarity=0.413  Sum_probs=30.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccC-CcEEEeCCcc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPL-NYTTVNRDTL  306 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~-~~~~i~~D~~  306 (369)
                      +|.++|.|||||||+|+.|++.+ ++.+|+.|.+
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~~~~~i~~Ddf   34 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILPNCCVIHQDDF   34 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcCCCeEEccccc
Confidence            47899999999999999999987 6899999987

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional

Probab=98.33  E-value=3e-06  Score=86.64  Aligned_cols=87  Identities=18%  Similarity=0.188  Sum_probs=59.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh------------------HHHHHHHHHHHHhCCCcEEEeCCC---
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS------------------WQKCVSVMKAALDSGLSVVVDNTN---  332 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~------------------~~~~~~~~~~~l~~g~~vIiD~tn---  332 (369)
                      -|+|+|+|||||||+++.|++.+++.+++.|.+..                  |+.....+.+.+.....+|+.+..   
T Consensus         2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D~~i~~~~g~~i~~i~~~~Ge~~fr~~E~~~l~~l~~~~~~Vis~Gggvv   81 (488)
T PRK13951          2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMDEEIERREGRSVRRIFEEDGEEYFRLKEKELLRELVERDNVVVATGGGVV   81 (488)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHcCCCHHHHHHHhhhHHHHHHHHHHHHHHhhcCCEEEECCCccc
Confidence            37999999999999999999999999999998731                  222333333333333456665542   


Q ss_pred             CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         333 PDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       333 ~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      .+.+.|+.+.    +.    .++|+++|.+++.+|-
T Consensus        82 ~~~~~r~~l~----~~----~vI~L~as~e~l~~Rl  109 (488)
T PRK13951         82 IDPENRELLK----KE----KTLFLYAPPEVLMERV  109 (488)
T ss_pred             cChHHHHHHh----cC----eEEEEECCHHHHHHHh
Confidence            3445555443    22    3799999999999873

>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea

Probab=98.30  E-value=4e-06  Score=73.71  Aligned_cols=124  Identities=17%  Similarity=0.255  Sum_probs=71.5

Q ss_pred             ceEEEEecCCceeecCCCCC----CCCC---------ccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHH
Q psy4598          25 AKIASFDLDGTLITTKSGKV----FPVD---------THDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRD   91 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~----~~~~---------~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~   91 (369)
                      .|++.||||+||.....-..    |...         ..+-..+||+|++.|++|+++|++|+++|-.        ... 
T Consensus         3 PklvvFDLD~TlW~~~~~~~~~~Pf~~~~~~~~v~D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt--------~~P-   73 (169)
T PF12689_consen    3 PKLVVFDLDYTLWPPWMDTHVGPPFKKISNGNVVVDSRGEEVSLYPDVPEILQELKERGVKLAVASRT--------DEP-   73 (169)
T ss_dssp             -SEEEE-STTTSSSS-TTTSS-S-EEE-TTS--EEETT--EE---TTHHHHHHHHHHCT--EEEEE----------S-H-
T ss_pred             CcEEEEcCcCCCCchhHhhccCCCceecCCCCEEEeCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECC--------CCh-
Confidence            47899999999986532100    1001         1122337999999999999999999999931        111 


Q ss_pred             HHHHHHHHHHHcCCC----e-----EEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCC
Q psy4598          92 FQAKAEKIIKSLNVP----V-----QMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKK  162 (369)
Q Consensus        92 ~~~~i~~~l~~l~i~----~-----~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~  162 (369)
                        +...++|+.++++    .     ++|-.  ...+.-.+...|..+.++.    +|+.++.+|+-|..           
T Consensus        74 --~~A~~~L~~l~i~~~~~~~~~~~~~F~~--~eI~~gsK~~Hf~~i~~~t----gI~y~eMlFFDDe~-----------  134 (169)
T PF12689_consen   74 --DWARELLKLLEIDDADGDGVPLIEYFDY--LEIYPGSKTTHFRRIHRKT----GIPYEEMLFFDDES-----------  134 (169)
T ss_dssp             --HHHHHHHHHTT-C----------CCECE--EEESSS-HHHHHHHHHHHH-------GGGEEEEES-H-----------
T ss_pred             --HHHHHHHHhcCCCccccccccchhhcch--hheecCchHHHHHHHHHhc----CCChhHEEEecCch-----------
Confidence              3455667777775    0     01100  1123336788999999875    79999999999997           


Q ss_pred             CCCCcccHHHHHhCCCCcc
Q psy4598         163 KDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       163 ~d~s~~D~~~A~n~Gi~f~  181 (369)
                           .-+.-....|+.++
T Consensus       135 -----~N~~~v~~lGV~~v  148 (169)
T PF12689_consen  135 -----RNIEVVSKLGVTCV  148 (169)
T ss_dssp             -----HHHHHHHTTT-EEE
T ss_pred             -----hcceeeEecCcEEE
Confidence                 46667777999985

The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.

>PRK01158 phosphoglycolate phosphatase; Provisional

Probab=98.30  E-value=3.8e-06  Score=77.00  Aligned_cols=44  Identities=18%  Similarity=0.241  Sum_probs=36.4

Q ss_pred             ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCC
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQG   80 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~   80 (369)
                      .|++++|+||||..+..            .+-|...++|++|+++|.+++|+|-.+
T Consensus         3 ~kli~~DlDGTLl~~~~------------~i~~~~~~al~~l~~~G~~~~iaTGR~   46 (230)
T PRK01158          3 IKAIAIDIDGTITDKDR------------RLSLKAVEAIRKAEKLGIPVILATGNV   46 (230)
T ss_pred             eeEEEEecCCCcCCCCC------------ccCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence            58999999999996432            156789999999999999999988654

>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]

Probab=98.30  E-value=1.8e-06  Score=78.85  Aligned_cols=99  Identities=19%  Similarity=0.189  Sum_probs=71.9

Q ss_pred             cccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCe--E-EEEecC---------CCCCCCC
Q psy4598          54 LLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPV--Q-MFVATQ---------YDRYRKP  121 (369)
Q Consensus        54 ~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~--~-~~~~~~---------~~~~rKP  121 (369)
                      .++|++.+.++.|++.|++++|+|-            .+...++.+.+.+|+..  . .+...+         ....++-
T Consensus        77 ~l~~ga~elv~~lk~~G~~v~iiSg------------g~~~lv~~ia~~lg~d~~~an~l~~~dG~ltG~v~g~~~~~~~  144 (212)
T COG0560          77 RLTPGAEELVAALKAAGAKVVIISG------------GFTFLVEPIAERLGIDYVVANELEIDDGKLTGRVVGPICDGEG  144 (212)
T ss_pred             cCCccHHHHHHHHHHCCCEEEEEcC------------ChHHHHHHHHHHhCCchheeeEEEEeCCEEeceeeeeecCcch
Confidence            4689999999999999999999997            13445667778888741  1 111111         0112233


Q ss_pred             chhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc-cCch
Q psy4598         122 VPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF-FTPE  184 (369)
Q Consensus       122 ~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f-~~pe  184 (369)
                      +-..++.+++++    ++++++++.|||+.                .|+-.=..+|.+. ++|.
T Consensus       145 K~~~l~~~~~~~----g~~~~~~~a~gDs~----------------nDlpml~~ag~~ia~n~~  188 (212)
T COG0560         145 KAKALRELAAEL----GIPLEETVAYGDSA----------------NDLPMLEAAGLPIAVNPK  188 (212)
T ss_pred             HHHHHHHHHHHc----CCCHHHeEEEcCch----------------hhHHHHHhCCCCeEeCcC
Confidence            456777777775    68899999999999                7999999999987 5553

>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]

Probab=98.29  E-value=4.4e-06  Score=71.63  Aligned_cols=106  Identities=15%  Similarity=0.227  Sum_probs=75.2

Q ss_pred             hhhhhhccccccEEEEEEcCCCCcHHHHHHHHhccC--CcEEEeCCcch-------------------------------
Q psy4598         261 QKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPL--NYTTVNRDTLG-------------------------------  307 (369)
Q Consensus       261 ~~~~~~~~~~~~~lIll~G~pGSGKSTla~~L~~~~--~~~~i~~D~~~-------------------------------  307 (369)
                      ..|.....-+.-++|+|.|.|.||||++|.+++...  .+.+|..|.+-                               
T Consensus        12 ~~~~~~ag~~~griVlLNG~~saGKSSiA~A~Q~~~a~pwmhigiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~   91 (205)
T COG3896          12 YRLAAMAGMPEGRIVLLNGGSSAGKSSIALAFQDLAAEPWMHIGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVH   91 (205)
T ss_pred             HHHHHHcCCCCceEEEecCCCccchhHHHHHHHHHhhcchhhhhHHHHHHhCCHHhhccccccccccccccCCceeeEee
Confidence            344444444445899999999999999999999865  57777777761                               


Q ss_pred             ---hHHH----HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         308 ---SWQK----CVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       308 ---~~~~----~~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                         .++.    ....+...+..|.++|.|+...++...-....+.  .+++|.+|-+.||.|+..+|.
T Consensus        92 ~gpi~e~~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r~l--~g~~v~~VGV~~p~E~~~~Re  157 (205)
T COG3896          92 PGPILELAMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLRVL--EGCRVWMVGVHVPDEEGARRE  157 (205)
T ss_pred             chhHHHHHHHHHHHHHHHHhccCcceeehhcccchhhHHHHHHHH--hCCceEEEEeeccHHHHHHHH
Confidence               0121    1233455668899999999886544444444433  388999999999999888774

>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase

Probab=98.29  E-value=2.7e-06  Score=71.12  Aligned_cols=86  Identities=22%  Similarity=0.272  Sum_probs=57.6

Q ss_pred             eEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcC----CCCCCHHHHHHHHHHHHH
Q psy4598          26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIG----RKKMSTRDFQAKAEKIIK  101 (369)
Q Consensus        26 k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~----~~~~~~~~~~~~i~~~l~  101 (369)
                      |+++||+||||.....+ .|.     +..+.+++.++|++|+++|+.|+++|-.+.-.    .|.+..+.+ ..+.+.|+
T Consensus         2 K~i~~DiDGTL~~~~~~-~y~-----~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~-~~t~~wL~   74 (126)
T TIGR01689         2 KRLVMDLDNTITLTENG-DYA-----NVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTL-PIIILWLN   74 (126)
T ss_pred             CEEEEeCCCCcccCCCC-ccc-----ccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhH-HHHHHHHH
Confidence            78999999999864321 222     22368899999999999999999999644221    111222222 35667788


Q ss_pred             HcCCCeEEEEecCCCCCCCCchh
Q psy4598         102 SLNVPVQMFVATQYDRYRKPVPG  124 (369)
Q Consensus       102 ~l~i~~~~~~~~~~~~~rKP~~g  124 (369)
                      +.++|++-++      .|||-+|
T Consensus        75 k~~ipYd~l~------~~kp~~~   91 (126)
T TIGR01689        75 QHNVPYDEIY------VGKPWCG   91 (126)
T ss_pred             HcCCCCceEE------eCCCcCC
Confidence            8999886333      5777654

Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.

>PRK06696 uridine kinase; Validated

Probab=98.28  E-value=6.5e-07  Score=82.34  Aligned_cols=39  Identities=15%  Similarity=0.231  Sum_probs=32.4

Q ss_pred             cccccEEEEEEcCCCCcHHHHHHHHhccC---C--cEEEeCCcc
Q psy4598         268 KAALDSVLIMIGSQGSGKSSFVSTYLKPL---N--YTTVNRDTL  306 (369)
Q Consensus       268 ~~~~~~lIll~G~pGSGKSTla~~L~~~~---~--~~~i~~D~~  306 (369)
                      +...|.+|.+.|+|||||||+|+.|++.+   +  +.+++.|++
T Consensus        18 ~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf   61 (223)
T PRK06696         18 NLTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDF   61 (223)
T ss_pred             CCCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccc
Confidence            34567899999999999999999999976   3  456678887

>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal

Probab=98.28  E-value=3.8e-06  Score=76.51  Aligned_cols=43  Identities=19%  Similarity=0.374  Sum_probs=36.6

Q ss_pred             eEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCC
Q psy4598          26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQG   80 (369)
Q Consensus        26 k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~   80 (369)
                      |++++|+||||.....            .+.|...++|++|+++|++++|+|..+
T Consensus         2 k~v~~DlDGTLl~~~~------------~i~~~~~~~i~~l~~~g~~~~~~TGR~   44 (215)
T TIGR01487         2 KLVAIDIDGTLTEPNR------------MISERAIEAIRKAEKKGIPVSLVTGNT   44 (215)
T ss_pred             cEEEEecCCCcCCCCc------------ccCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence            7899999999995431            267899999999999999999999754

TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.

>PRK11590 hypothetical protein; Provisional

Probab=98.27  E-value=2.6e-06  Score=77.58  Aligned_cols=99  Identities=15%  Similarity=0.142  Sum_probs=62.3

Q ss_pred             ccccHHHHH-HHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC-CeEEEEecCC-----CC-CCCCchh--
Q psy4598          55 LFSNIESVL-KQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV-PVQMFVATQY-----DR-YRKPVPG--  124 (369)
Q Consensus        55 ~~p~v~~~L-~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i-~~~~~~~~~~-----~~-~rKP~~g--  124 (369)
                      ++|++.+.| +.|++.|++++|+||.+            ...++.+++.+|+ ..+-++|+.-     .. ...|.-|  
T Consensus        96 ~~pga~e~L~~~l~~~G~~l~IvSas~------------~~~~~~il~~l~~~~~~~~i~t~l~~~~tg~~~g~~c~g~~  163 (211)
T PRK11590         96 AFPVVQERLTTYLLSSDADVWLITGSP------------QPLVEQVYFDTPWLPRVNLIASQMQRRYGGWVLTLRCLGHE  163 (211)
T ss_pred             CCccHHHHHHHHHHhCCCEEEEEeCCc------------HHHHHHHHHHccccccCceEEEEEEEEEccEECCccCCChH
Confidence            489999999 56888999999999953            2345566677663 1222233320     00 1112111  


Q ss_pred             HHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc-cCchh
Q psy4598         125 MWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF-FTPEQ  185 (369)
Q Consensus       125 m~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f-~~pe~  185 (369)
                      =...+.+.+    +.+...+++-||+.                +|+..-.-+|-++ ++|..
T Consensus       164 K~~~l~~~~----~~~~~~~~aY~Ds~----------------~D~pmL~~a~~~~~vnp~~  205 (211)
T PRK11590        164 KVAQLERKI----GTPLRLYSGYSDSK----------------QDNPLLYFCQHRWRVTPRG  205 (211)
T ss_pred             HHHHHHHHh----CCCcceEEEecCCc----------------ccHHHHHhCCCCEEECccH
Confidence            112222222    34667889999999                8999999999887 66654

>PRK00698 tmk thymidylate kinase; Validated

Probab=98.27  E-value=1.3e-05  Score=72.14  Aligned_cols=96  Identities=17%  Similarity=0.133  Sum_probs=57.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeC--C----------------cchh-----------HHHHHHHHH
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNR--D----------------TLGS-----------WQKCVSVMK  317 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~--D----------------~~~~-----------~~~~~~~~~  317 (369)
                      ..+|++.|++||||||+++.|++.+     ++.....  +                .+..           +......+.
T Consensus         3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~   82 (205)
T PRK00698          3 GMFITIEGIDGAGKSTQIELLKELLEQQGRDVVFTREPGGTPLGEKLRELLLDPNEEMDDKTELLLFYAARAQHLEEVIK   82 (205)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeEeeCCCCChHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999864     2222110  0                1100           112223344


Q ss_pred             HHHhCCCcEEEeCCCCC------------HHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         318 AALDSGLSVVVDNTNPD------------KESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       318 ~~l~~g~~vIiD~tn~~------------~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      ..+..|..||+|-...+            ...-..+...+...-.+-.++++++|.+++.+|
T Consensus        83 ~~l~~g~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pd~~i~l~~~~~~~~~R  144 (205)
T PRK00698         83 PALARGKWVISDRFIDSSLAYQGGGRGLDIDLLLALNDFALGGFRPDLTLYLDVPPEVGLAR  144 (205)
T ss_pred             HHHHCCCEEEECCchhHHHHHCCCCCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHH
Confidence            55677889999933221            111222222222223466899999999999887

>PRK05480 uridine/cytidine kinase; Provisional

Probab=98.25  E-value=6.7e-06  Score=74.63  Aligned_cols=37  Identities=24%  Similarity=0.420  Sum_probs=32.0

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccC---CcEEEeCCcc
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPL---NYTTVNRDTL  306 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~---~~~~i~~D~~  306 (369)
                      ..+.+|.|+|+|||||||+++.|++.+   .+.+++.|.+
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~   43 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY   43 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence            356899999999999999999999986   4677888876

>PRK14730 coaE dephospho-CoA kinase; Provisional

Probab=98.24  E-value=2.9e-06  Score=76.48  Aligned_cols=35  Identities=17%  Similarity=0.198  Sum_probs=32.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG  307 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~  307 (369)
                      .+|.++|++||||||+++.|.+.+|+.+|+.|.+.
T Consensus         2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~   36 (195)
T PRK14730          2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYA   36 (195)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHH
Confidence            47899999999999999999998899999999973

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.23  E-value=5.3e-06  Score=74.88  Aligned_cols=90  Identities=17%  Similarity=0.233  Sum_probs=55.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEE----------------------eCCcchh-----------------HHHH
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTV----------------------NRDTLGS-----------------WQKC  312 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i----------------------~~D~~~~-----------------~~~~  312 (369)
                      ..+|+|+|++||||||+++.|+..++...+                      +.+.+..                 |...
T Consensus         5 g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~   84 (205)
T PRK00300          5 GLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYYGTP   84 (205)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccccCc
Confidence            368999999999999999999987641111                      1111110                 1111


Q ss_pred             HHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         313 VSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       313 ~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      ...+...+..|..+|+|...   ...   ..+....+-.+.++++.++.+++.+|
T Consensus        85 ~~~i~~~l~~g~~vi~dl~~---~g~---~~l~~~~~~~~~I~i~~~s~~~l~~R  133 (205)
T PRK00300         85 RSPVEEALAAGKDVLLEIDW---QGA---RQVKKKMPDAVSIFILPPSLEELERR  133 (205)
T ss_pred             HHHHHHHHHcCCeEEEeCCH---HHH---HHHHHhCCCcEEEEEECcCHHHHHHH
Confidence            34567788899999999653   222   23334444334455556778777776

>TIGR00152 dephospho-CoA kinase

Probab=98.23  E-value=3.4e-06  Score=75.33  Aligned_cols=33  Identities=21%  Similarity=0.482  Sum_probs=30.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      +|.++|.+||||||+++.|.+..++.+++.|.+
T Consensus         1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~   33 (188)
T TIGR00152         1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKI   33 (188)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHH
Confidence            378999999999999999999888999999997

This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.

>PRK13975 thymidylate kinase; Provisional

Probab=98.22  E-value=8.5e-06  Score=72.92  Aligned_cols=28  Identities=25%  Similarity=0.461  Sum_probs=25.3

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNY  298 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~  298 (369)
                      |..+|++.|++||||||+++.|++.++.
T Consensus         1 m~~~I~ieG~~GsGKtT~~~~L~~~l~~   28 (196)
T PRK13975          1 MNKFIVFEGIDGSGKTTQAKLLAEKLNA   28 (196)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            4579999999999999999999999874

>KOG4238|consensus

Probab=98.21  E-value=2e-06  Score=82.34  Aligned_cols=96  Identities=16%  Similarity=0.236  Sum_probs=80.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchh----------------HHHHHHHHHHHHhCCCcEEEeCC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGS----------------WQKCVSVMKAALDSGLSVVVDNT  331 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~----------------~~~~~~~~~~~l~~g~~vIiD~t  331 (369)
                      +-|+++|++|+||||++-+|.+.+     ++.-++.|.++.                .+++.+.++-..+.|...|-.-.
T Consensus        51 ctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~knlgfs~edreenirriaevaklfadaglvcitsfi  130 (627)
T KOG4238|consen   51 CTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKNLGFSPEDREENIRRIAEVAKLFADAGLVCITSFI  130 (627)
T ss_pred             eeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhccCCCchhHHHHHHHHHHHHHHHhcCCceeeehhc
Confidence            689999999999999999998864     577788888852                34556666667788877776666


Q ss_pred             CCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         332 NPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       332 n~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      .+..+.|...+++....+.++..|++++|+++|.+|+
T Consensus       131 spf~~dr~~arkihe~~~l~f~ev~v~a~l~vceqrd  167 (627)
T KOG4238|consen  131 SPFAKDRENARKIHESAGLPFFEVFVDAPLNVCEQRD  167 (627)
T ss_pred             ChhhhhhhhhhhhhcccCCceEEEEecCchhhhhhcC
Confidence            7777888888999899999999999999999999986

>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase

Probab=98.21  E-value=4.7e-06  Score=81.15  Aligned_cols=103  Identities=17%  Similarity=0.097  Sum_probs=70.7

Q ss_pred             ccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHc-C-------C--CeEEEEecCC---
Q psy4598          49 THDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSL-N-------V--PVQMFVATQY---  115 (369)
Q Consensus        49 ~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l-~-------i--~~~~~~~~~~---  115 (369)
                      +.+....+|++++.|+.|+++|++++|+||.+         .   ..++.+++.+ |       +  .|+++++...   
T Consensus       179 p~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~---------~---~yt~~im~~l~g~~~~~~~w~~yFD~IIt~a~KP~  246 (343)
T TIGR02244       179 PEKYVLRDPKLPLFLSKLKEHGKKLFLLTNSD---------Y---DYTDKGMKYLLGPFLGEHDWRDYFDVVIVDARKPG  246 (343)
T ss_pred             HHHHhccchhHHHHHHHHHHCCCeEEEEeCCC---------H---HHHHHHHHHhhCCcccccchHhhCcEEEeCCCCCc
Confidence            44444568999999999999999999999943         2   2344445553 4       3  4776665421   


Q ss_pred             --------------CCCCCCch------------hHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCccc
Q psy4598         116 --------------DRYRKPVP------------GMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTD  169 (369)
Q Consensus       116 --------------~~~rKP~~------------gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D  169 (369)
                                    ...-++..            |-|..+.+.+    ++..++++||||..-               +|
T Consensus       247 FF~~~~pf~~v~~~~g~~~~~~~~~l~~g~vY~gGn~~~~~~~l----~~~~~~vlYvGD~i~---------------~D  307 (343)
T TIGR02244       247 FFTEGRPFRQVDVETGSLKWGEVDGLEPGKVYSGGSLKQFHELL----KWRGKEVLYFGDHIY---------------GD  307 (343)
T ss_pred             ccCCCCceEEEeCCCCcccCCccccccCCCeEeCCCHHHHHHHH----CCCCCcEEEECCcch---------------HH
Confidence                          00011111            4556666654    678899999999983               89


Q ss_pred             HHHHH-hCCCCccC
Q psy4598         170 HLFAF-NLNLAFFT  182 (369)
Q Consensus       170 ~~~A~-n~Gi~f~~  182 (369)
                      +..|+ .+|++++.
T Consensus       308 i~~~kk~~Gw~Tvl  321 (343)
T TIGR02244       308 LLRSKKKRGWRTAA  321 (343)
T ss_pred             HHhhHHhcCcEEEE
Confidence            99998 99999954

A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.

>PRK13973 thymidylate kinase; Provisional

Probab=98.21  E-value=1.6e-05  Score=72.64  Aligned_cols=95  Identities=18%  Similarity=0.225  Sum_probs=61.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC---CcEEEeC---------------------Ccch-----------hHHHHHHHHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL---NYTTVNR---------------------DTLG-----------SWQKCVSVMK  317 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~---~~~~i~~---------------------D~~~-----------~~~~~~~~~~  317 (369)
                      .+|++-|++||||||.++.|++.+   +..++..                     +.+.           .++.....+.
T Consensus         4 ~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~ll~~a~r~~~~~~~i~   83 (213)
T PRK13973          4 RFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAELYGPRMEALLFAAARDDHVEEVIR   83 (213)
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            799999999999999999999986   5444422                     0110           0122234456


Q ss_pred             HHHhCCCcEEEeCCCCC------------HHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         318 AALDSGLSVVVDNTNPD------------KESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       318 ~~l~~g~~vIiD~tn~~------------~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      .++..|..||.|-...+            ......+...+...-.+=.++++++|++++.+|
T Consensus        84 ~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PD~vi~Ldv~~e~~~~R  145 (213)
T PRK13973         84 PALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALERVAINGVMPDLTLILDIPAEVGLER  145 (213)
T ss_pred             HHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHH
Confidence            67888988888875522            112222222222223466899999999999887

>PRK04220 2-phosphoglycerate kinase; Provisional

Probab=98.20  E-value=1.7e-05  Score=75.70  Aligned_cols=93  Identities=17%  Similarity=0.280  Sum_probs=64.9

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcE-EEeCCcch------------------hH---H------------------
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYT-TVNRDTLG------------------SW---Q------------------  310 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~-~i~~D~~~------------------~~---~------------------  310 (369)
                      .|.+|+++|++||||||+|..|++.++.. +|+.|.++                  .|   .                  
T Consensus        91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l~g~~~  170 (301)
T PRK04220         91 EPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVIYGFER  170 (301)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhhhhHHH
Confidence            57899999999999999999999999875 78888875                  11   1                  


Q ss_pred             -------HHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCH-HHHHHH
Q psy4598         311 -------KCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISK-EHAKHN  367 (369)
Q Consensus       311 -------~~~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~-e~~~~R  367 (369)
                             .+...+..++..|.++|+++....+.......   .+ .-.+..+++.++. +..++|
T Consensus       171 ~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~~~~---~~-~~~~i~~~l~i~~ee~h~~R  231 (301)
T PRK04220        171 HVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIKEKY---LE-NPNVFMFVLTLSDEEAHKAR  231 (301)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHHHhh---hc-CCCEEEEEEEECCHHHHHHH
Confidence                   02234456678999999999999887644421   22 2334556666554 444433

>PRK14738 gmk guanylate kinase; Provisional

Probab=98.19  E-value=6.7e-06  Score=74.71  Aligned_cols=93  Identities=16%  Similarity=0.234  Sum_probs=55.5

Q ss_pred             cccccEEEEEEcCCCCcHHHHHHHHhccC-Cc---------------------EEEeCCcchh-----------------
Q psy4598         268 KAALDSVLIMIGSQGSGKSSFVSTYLKPL-NY---------------------TTVNRDTLGS-----------------  308 (369)
Q Consensus       268 ~~~~~~lIll~G~pGSGKSTla~~L~~~~-~~---------------------~~i~~D~~~~-----------------  308 (369)
                      .+..+.+|+|+|||||||||+++.|.+.. ..                     .+++.+.+..                 
T Consensus         9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~   88 (206)
T PRK14738          9 KPAKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNY   88 (206)
T ss_pred             CCCCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCce
Confidence            35567899999999999999999997642 11                     1112222210                 


Q ss_pred             HHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEe-CCHHHHHHH
Q psy4598         309 WQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMN-ISKEHAKHN  367 (369)
Q Consensus       309 ~~~~~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~-~~~e~~~~R  367 (369)
                      |..-...+...++.|+.+|+|...   +.+..+    ++....+.++++. ++.+++.+|
T Consensus        89 YGt~~~~i~~~~~~g~~vi~~~~~---~g~~~l----~~~~pd~~~if~~pps~e~l~~R  141 (206)
T PRK14738         89 YGVPKAPVRQALASGRDVIVKVDV---QGAASI----KRLVPEAVFIFLAPPSMDELTRR  141 (206)
T ss_pred             ecCCHHHHHHHHHcCCcEEEEcCH---HHHHHH----HHhCCCeEEEEEeCCCHHHHHHH
Confidence            111124667788999999998644   333333    3334445455553 455666665

>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2

Probab=98.18  E-value=4.7e-06  Score=73.96  Aligned_cols=32  Identities=25%  Similarity=0.472  Sum_probs=30.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      +|.|+|.|||||||+++.+.+ +++.+|+.|.+
T Consensus         1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~   32 (179)
T cd02022           1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKI   32 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHH
Confidence            478999999999999999999 89999999987

7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.

>TIGR00235 udk uridine kinase

Probab=98.17  E-value=9.6e-06  Score=73.61  Aligned_cols=40  Identities=20%  Similarity=0.366  Sum_probs=32.6

Q ss_pred             ccccccEEEEEEcCCCCcHHHHHHHHhccC---CcEEEeCCcc
Q psy4598         267 MKAALDSVLIMIGSQGSGKSSFVSTYLKPL---NYTTVNRDTL  306 (369)
Q Consensus       267 ~~~~~~~lIll~G~pGSGKSTla~~L~~~~---~~~~i~~D~~  306 (369)
                      |.++...+|.++|++||||||+++.|...+   ++.+++.|.+
T Consensus         1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~   43 (207)
T TIGR00235         1 MDKPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNY   43 (207)
T ss_pred             CCCCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccc
Confidence            345566899999999999999999999865   3667888775

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily

Probab=98.17  E-value=1e-05  Score=73.90  Aligned_cols=43  Identities=12%  Similarity=0.013  Sum_probs=36.1

Q ss_pred             CCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         119 RKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       119 rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      +.++...+.++++++    +++++++++|||+.                .|+.++..+|+.+.
T Consensus       147 ~~~K~~~i~~l~~~~----~i~~~~~i~~GD~~----------------NDi~m~~~ag~~va  189 (225)
T TIGR01482       147 GVNKGVAVKKLKEKL----GIKPGETLVCGDSE----------------NDIDLFEVPGFGVA  189 (225)
T ss_pred             CCCHHHHHHHHHHHh----CCCHHHEEEECCCH----------------hhHHHHHhcCceEE
Confidence            345566788888875    78899999999998                89999999999873

catalyze the same reaction as SPP.

>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain

Probab=98.14  E-value=1.3e-05  Score=69.71  Aligned_cols=108  Identities=19%  Similarity=0.149  Sum_probs=68.9

Q ss_pred             CCCceEEEEecCCceeecCCCCCCCC-----------------------CccccccccccHHHHHHHHHHCCcEEEEEec
Q psy4598          22 CNSAKIASFDLDGTLITTKSGKVFPV-----------------------DTHDWKLLFSNIESVLKQYLDDGYKLVIFTN   78 (369)
Q Consensus        22 ~~~~k~~~fDlDgTLi~~~sg~~~~~-----------------------~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TN   78 (369)
                      ..+++++++|||.||+.+........                       ....+..++||+.+.|++|.+. |.++|+||
T Consensus         3 ~~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~-yel~I~T~   81 (156)
T TIGR02250         3 REKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKL-YEMHVYTM   81 (156)
T ss_pred             cCCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhh-cEEEEEeC
Confidence            45678899999999998754221111                       0112234689999999999855 99999999


Q ss_pred             CCCcCCCCCCHHHHHHHHHHHHHHcCC---Ce-EEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCcc
Q psy4598          79 QGAIGRKKMSTRDFQAKAEKIIKSLNV---PV-QMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAA  151 (369)
Q Consensus        79 q~gi~~~~~~~~~~~~~i~~~l~~l~i---~~-~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~  151 (369)
                      .+            +.....+++.++.   .| ..+++.+.+.  .+...-    ++..   ++.+++.+++|.|+.
T Consensus        82 ~~------------~~yA~~vl~~ldp~~~~F~~ri~~rd~~~--~~~~Kd----L~~i---~~~d~~~vvivDd~~  137 (156)
T TIGR02250        82 GT------------RAYAQAIAKLIDPDGKYFGDRIISRDESG--SPHTKS----LLRL---FPADESMVVIIDDRE  137 (156)
T ss_pred             Cc------------HHHHHHHHHHhCcCCCeeccEEEEeccCC--CCcccc----HHHH---cCCCcccEEEEeCCH
Confidence            43            3345566677664   35 4555554432  222212    2221   246788999999986

This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.

>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins

Probab=98.12  E-value=2e-05  Score=74.39  Aligned_cols=96  Identities=16%  Similarity=0.258  Sum_probs=62.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchhHHHHHHHHHHHH--hCCCcEEEeCCCCC-HHHHHHHHHHHHhc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAAL--DSGLSVVVDNTNPD-KESRHRYIEAAKQH  348 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~~~~~~~~~~~~l--~~g~~vIiD~tn~~-~~~r~~~~~la~~~  348 (369)
                      +.+|+++|++||||||..+.|.. +|+..++.=-..-...+.+.+...-  ..+..+++|.-+.. .......+.-.++.
T Consensus         1 m~~vIiTGlSGaGKs~Al~~lED-~Gy~cvDNlP~~Ll~~l~~~~~~~~~~~~~~Ai~iD~R~~~~~~~~~~~~~~l~~~   79 (284)
T PF03668_consen    1 MELVIITGLSGAGKSTALRALED-LGYYCVDNLPPSLLPQLIELLAQSNSKIEKVAIVIDIRSREFFEDLFEALDELRKK   79 (284)
T ss_pred             CeEEEEeCCCcCCHHHHHHHHHh-cCeeEEcCCcHHHHHHHHHHHHhcCCCCceEEEEEeCCChHHHHHHHHHHHHHHhc
Confidence            36899999999999999988854 5555554333233334444333211  12346789987643 22233334444566


Q ss_pred             CCeEEEEEEeCCHHHHHHHc
Q psy4598         349 GVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       349 ~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      ++.+.+++++++.++..+|-
T Consensus        80 ~~~~~ilFLdA~d~~LirRy   99 (284)
T PF03668_consen   80 GIDVRILFLDASDEVLIRRY   99 (284)
T ss_pred             CCceEEEEEECChHHHHHHH
Confidence            99999999999999999883

This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding

>PRK07667 uridine kinase; Provisional

Probab=98.12  E-value=2.1e-05  Score=70.76  Aligned_cols=35  Identities=23%  Similarity=0.352  Sum_probs=30.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTL  306 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~  306 (369)
                      +.+|.|.|+|||||||+++.|++.+     +..+++.|.+
T Consensus        17 ~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~   56 (193)
T PRK07667         17 RFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY   56 (193)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence            3799999999999999999999864     4678888885

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=98.11  E-value=6.9e-06  Score=61.25  Aligned_cols=45  Identities=20%  Similarity=0.392  Sum_probs=35.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcc---CCcEEEeCCcchhHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHH
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKP---LNYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRH  339 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~---~~~~~i~~D~~~~~~~~~~~~~~~l~~g~~vIiD~tn~~~~~r~  339 (369)
                      +|+++|+|||||||+++.|++.   .++.+++.                     .+|+|........|.
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~---------------------~~I~eg~~~~~~~~~   48 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE---------------------IVILEGLYASYKSRD   48 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE---------------------EEEecchhhhhhhHH
Confidence            3788999999999999999998   56666654                     788888876555443

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=98.11  E-value=2.2e-06  Score=70.70  Aligned_cols=84  Identities=15%  Similarity=0.247  Sum_probs=48.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhccCCcEEE----------e-CCc-----ch-----hHHHHHHHHHHH---HhCCCcEEEeC
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPLNYTTV----------N-RDT-----LG-----SWQKCVSVMKAA---LDSGLSVVVDN  330 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~~~~~i----------~-~D~-----~~-----~~~~~~~~~~~~---l~~g~~vIiD~  330 (369)
                      |+|.|+|||||||+|+.|+++++..+.          . .+.     ..     ........+...   ...+..+|+|.
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~   80 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERLGDIIRDIAPEEDIVDSIDDNPDWKENKRLDMEFQDELLDSIIQAIRRMNKGRNIIIDG   80 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHCHHHHHHHHHTTSHSSHCCHHCCCCCCCSCHHHHHHHHHHHHHHHHHHTTTSCEEEEE
T ss_pred             CEEECCCCCCHHHHHHHHHHHHCcHHHHHHHhcCCcccccccchhhhhhhhhhhhHHHHHHHHHHhhcccccCCcEEEec
Confidence            789999999999999999998411110          0 000     00     112233333332   45677899998


Q ss_pred             CCCCHHHHHHHHHHHHhcCCeEEE-EEEeCCHHHHHHHc
Q psy4598         331 TNPDKESRHRYIEAAKQHGVRCIA-VHMNISKEHAKHNI  368 (369)
Q Consensus       331 tn~~~~~r~~~~~la~~~~~~v~~-v~l~~~~e~~~~Rn  368 (369)
                      .....          ......... |+++||++++.+|-
T Consensus        81 ~~~~~----------~~~~~~~~~~i~L~~~~e~~~~R~  109 (129)
T PF13238_consen   81 ILSNL----------ELERLFDIKFIFLDCSPEELRKRL  109 (129)
T ss_dssp             SSEEE----------CETTEEEESSEEEE--HHHHHHHH
T ss_pred             ccchh----------cccccceeeEEEEECCHHHHHHHH
Confidence            76321          111222233 99999999999883

...

>PLN02842 nucleotide kinase

Probab=98.10  E-value=1.1e-05  Score=82.19  Aligned_cols=89  Identities=11%  Similarity=0.144  Sum_probs=58.6

Q ss_pred             EEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh-----------H------------HHHHHHHHHHHh----CCCcEE
Q psy4598         276 IMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS-----------W------------QKCVSVMKAALD----SGLSVV  327 (369)
Q Consensus       276 ll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~-----------~------------~~~~~~~~~~l~----~g~~vI  327 (369)
                      +|.|+|||||||+++.|++.++..+|+.+++ +.           .            ..+...+...++    ....+|
T Consensus         1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~~~T~iG~~Ire~l~~G~lvPdeiv~~ll~drl~~~~~~~~G~I   80 (505)
T PLN02842          1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVSAGTDIGKRAKEFMNSGRLVPDEIVIAMVTGRLSREDAKEKGWL   80 (505)
T ss_pred             CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhccCCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHhCccccCCcEE
Confidence            5789999999999999999999999997664 21           0            112222223332    124588


Q ss_pred             EeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         328 VDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       328 iD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      +|+...+......+.   +....+-.++++++|.+++++|
T Consensus        81 LDGfPRt~~Qa~~Le---~~~~~PDlVI~LDvpdevlleR  117 (505)
T PLN02842         81 LDGYPRSFAQAQSLE---KLKIRPDIFILLDVPDEILIDR  117 (505)
T ss_pred             EeCCCCcHHHHHHHH---hcCCCCCEEEEEeCCHHHHHHH
Confidence            898655544333322   2222345699999999999888

>TIGR00041 DTMP_kinase thymidylate kinase

Probab=98.10  E-value=1.5e-05  Score=71.17  Aligned_cols=96  Identities=17%  Similarity=0.194  Sum_probs=56.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCc-----EEEeCC---c----chhH-----------------------HHHHHHHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNY-----TTVNRD---T----LGSW-----------------------QKCVSVMK  317 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~-----~~i~~D---~----~~~~-----------------------~~~~~~~~  317 (369)
                      ++|++.|++||||||+++.|++.++.     .++...   .    ++.+                       +.....+.
T Consensus         4 ~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~r~~~~~~~i~   83 (195)
T TIGR00041         4 MFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFTREPGGTPIGEKIRELLLNENDEPLTDKAEALLFAADRHEHLEDKIK   83 (195)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCCccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999988632     222110   0    0000                       11123344


Q ss_pred             HHHhCCCcEEEeCCCCCHH---------HHHHHHHHHHhcC--CeEEEEEEeCCHHHHHHHc
Q psy4598         318 AALDSGLSVVVDNTNPDKE---------SRHRYIEAAKQHG--VRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       318 ~~l~~g~~vIiD~tn~~~~---------~r~~~~~la~~~~--~~v~~v~l~~~~e~~~~Rn  368 (369)
                      .++..|..||+|-...+..         ....+..+.....  .+-.++++++|.+++++|.
T Consensus        84 ~~l~~~~~VI~DR~~~s~~ay~~~~~~~~~~~~~~l~~~~~~~~~d~~i~l~~~~~~~~~R~  145 (195)
T TIGR00041        84 PALAEGKLVISDRYVFSSIAYQGGARGIDEDLVLELNEDALGDMPDLTIYLDIDPEVALERL  145 (195)
T ss_pred             HHHhCCCEEEECCcccHHHHHccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHH
Confidence            5667788899995322211         1122222222221  2456899999999999884

Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.

>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544

Probab=98.10  E-value=9.8e-06  Score=76.61  Aligned_cols=90  Identities=17%  Similarity=0.107  Sum_probs=67.3

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEE------EecCCCCCCCCch---
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMF------VATQYDRYRKPVP---  123 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~------~~~~~~~~rKP~~---  123 (369)
                      +.||+.+.|+.|++.|++++|+|+  |          +...++.+++++|+  ++..+      +..+.....+|.|   
T Consensus       122 l~pG~~efl~~L~~~GIpv~IvS~--G----------~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~  189 (277)
T TIGR01544       122 LKDGYENFFDKLQQHSIPVFIFSA--G----------IGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIH  189 (277)
T ss_pred             cCcCHHHHHHHHHHCCCcEEEEeC--C----------cHHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCccc
Confidence            579999999999999999999998  2          35678888998888  33333      2233344467777   


Q ss_pred             ------hHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHH
Q psy4598         124 ------GMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAF  174 (369)
Q Consensus       124 ------gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~  174 (369)
                            .+++.+.+.++  ..++++++++|||++                +|+.+|.
T Consensus       190 ~~~K~~~v~~~~~~~~~--~~~~~~~vI~vGDs~----------------~Dl~ma~  228 (277)
T TIGR01544       190 TFNKNHDVALRNTEYFN--QLKDRSNIILLGDSQ----------------GDLRMAD  228 (277)
T ss_pred             ccccHHHHHHHHHHHhC--ccCCcceEEEECcCh----------------hhhhHhc
Confidence                  56666666542  127889999999999                7998866

This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.

>PLN02924 thymidylate kinase

Probab=98.08  E-value=2e-05  Score=72.42  Aligned_cols=98  Identities=22%  Similarity=0.271  Sum_probs=62.6

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccCC-----cEEEe-CC--c-----ch----------h-----------HHHHHHH
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPLN-----YTTVN-RD--T-----LG----------S-----------WQKCVSV  315 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~~-----~~~i~-~D--~-----~~----------~-----------~~~~~~~  315 (369)
                      .+..+|++.|++||||||+++.|++.+.     +.++. .+  .     ++          .           ++. ...
T Consensus        14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g~~ir~~l~~~~~~~~~~~~llf~adR~~~-~~~   92 (220)
T PLN02924         14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLSNKSQLDDRAIHLLFSANRWEK-RSL   92 (220)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH-HHH
Confidence            3457999999999999999999998752     22221 11  1     11          0           111 233


Q ss_pred             HHHHHhCCCcEEEeCCCCCHHHH--------HHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         316 MKAALDSGLSVVVDNTNPDKESR--------HRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       316 ~~~~l~~g~~vIiD~tn~~~~~r--------~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      +..+++.|..||.|-...+.-..        +.+..+....-.+-.++++++|.+++.+|.
T Consensus        93 I~pal~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~~~~~~~~PDlvi~Ld~~~~~a~~R~  153 (220)
T PLN02924         93 MERKLKSGTTLVVDRYSYSGVAFSAAKGLDLEWCKAPEVGLPAPDLVLYLDISPEEAAERG  153 (220)
T ss_pred             HHHHHHCCCEEEEccchhHHHHHHHhcCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHh
Confidence            56677889999999876532111        222233332334678999999999999883

>TIGR01545 YfhB_g-proteo haloacid dehalogenase superfamily, subfamily IF hydrolase, YfhB

Probab=98.08  E-value=1e-05  Score=73.84  Aligned_cols=99  Identities=13%  Similarity=0.049  Sum_probs=60.7

Q ss_pred             ccccHHHHHH-HHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC-CeEEEEecC----CC-C-CCCCchh--
Q psy4598          55 LFSNIESVLK-QYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV-PVQMFVATQ----YD-R-YRKPVPG--  124 (369)
Q Consensus        55 ~~p~v~~~L~-~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i-~~~~~~~~~----~~-~-~rKP~~g--  124 (369)
                      ++|++.+.|+ .++++|++++|+||.+            ...++.+++..++ ..+-++|+.    +. . ...|.-|  
T Consensus        95 l~pga~e~L~~~l~~~G~~v~IvSas~------------~~~~~~ia~~~~~~~~~~~i~t~le~~~gg~~~g~~c~g~~  162 (210)
T TIGR01545        95 AFPLVAERLRQYLESSDADIWLITGSP------------QPLVEAVYFDSNFIHRLNLIASQIERGNGGWVLPLRCLGHE  162 (210)
T ss_pred             CCccHHHHHHHHHHhCCCEEEEEcCCc------------HHHHHHHHHhccccccCcEEEEEeEEeCCceEcCccCCChH
Confidence            6899999996 7888999999999943            2234455555433 112233442    10 0 1111111  


Q ss_pred             HHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc-cCchh
Q psy4598         125 MWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF-FTPEQ  185 (369)
Q Consensus       125 m~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f-~~pe~  185 (369)
                      =...+.+.+    +.+.+.+++-||+.                +|+..-.-+|-++ ++|..
T Consensus       163 Kv~rl~~~~----~~~~~~~~aYsDS~----------------~D~pmL~~a~~~~~Vnp~~  204 (210)
T TIGR01545       163 KVAQLEQKI----GSPLKLYSGYSDSK----------------QDNPLLAFCEHRWRVSKRG  204 (210)
T ss_pred             HHHHHHHHh----CCChhheEEecCCc----------------ccHHHHHhCCCcEEECcch
Confidence            112222222    23567889999999                7999999999887 66654

The gene name comes from the E. coli gene. There is currently no information regarding the function of this gene.

>PRK06761 hypothetical protein; Provisional

Probab=98.07  E-value=1.6e-05  Score=75.48  Aligned_cols=93  Identities=12%  Similarity=0.150  Sum_probs=61.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcE------EEeCCcch-------------hHHHH--------HHHHHHHHhCCC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYT------TVNRDTLG-------------SWQKC--------VSVMKAALDSGL  324 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~------~i~~D~~~-------------~~~~~--------~~~~~~~l~~g~  324 (369)
                      ..+|+++|+|||||||+++.+++.+...      +...|...             .+..+        ......+...|.
T Consensus         3 ~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~~~~~~~~~eer~~~l~~~~~f~~~l~~~~~~~g~   82 (282)
T PRK06761          3 TKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADYDGVACFTKEEFDRLLSNYPDFKEVLLKNVLKKGD   82 (282)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhhccccCCCHHHHHHHHHhhhHHHHHHHHHHHHcCC
Confidence            4689999999999999999999987531      23333211             11111        123445667888


Q ss_pred             cEEEeCCCCCHHHHHHHHH-HHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         325 SVVVDNTNPDKESRHRYIE-AAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       325 ~vIiD~tn~~~~~r~~~~~-la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      .+|+-..-.....|+.+.. +..  ...+..+| .+|.|...+|
T Consensus        83 ~~i~~~~~l~~~yr~~~~~~~~~--~~~v~~~h-~~p~e~i~~R  123 (282)
T PRK06761         83 YYLLPYRKIKNEFGDQFSDELFN--DISKNDIY-ELPFDKNTEL  123 (282)
T ss_pred             eEEEEehhhhHHHhhhhhhhhcc--cceeeeee-cCCHHHHHHH
Confidence            8999888888887777763 111  12345566 8999988777

>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs)

Probab=98.05  E-value=2.3e-05  Score=70.06  Aligned_cols=95  Identities=21%  Similarity=0.328  Sum_probs=58.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCc---------chh-----------HHHH-----HHHHHHH---HhCCCc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDT---------LGS-----------WQKC-----VSVMKAA---LDSGLS  325 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~---------~~~-----------~~~~-----~~~~~~~---l~~g~~  325 (369)
                      +|++.|++||||||+++.|++.+++.++....         ++.           .+..     .+...++   ++.+..
T Consensus         1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~~~Ep~~~~~~~~~~l~~~~~~~~~~~~~~q~~~~~~r~~~~~~~~~~~~~~~~   80 (193)
T cd01673           1 VIVVEGNIGAGKSTLAKELAEHLGYEVVPEPVEPDVEGNPFLEKFYEDPKRWAFPFQLYFLLSRLKQYKDALEHLSTGQG   80 (193)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCccccccccccCCCCCCHHHHHhCHHhccHHHHHHHHHHHHHHHHHHHhhcccCCc
Confidence            47899999999999999999877665554431         110           0100     1111222   347889


Q ss_pred             EEEeCCCCCHH---------------HHHHH---HH-HHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         326 VVVDNTNPDKE---------------SRHRY---IE-AAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       326 vIiD~tn~~~~---------------~r~~~---~~-la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      ||+|-...+..               ....+   .. +......+-.++++++|.+++++|.
T Consensus        81 vI~DR~~~S~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pd~~i~l~~~~~~~~~Ri  142 (193)
T cd01673          81 VILERSIFSDRVFAEANLKEGGIMKTEYDLYNELFDNLIPELLPPDLVIYLDASPETCLKRI  142 (193)
T ss_pred             eEEEcChhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHH
Confidence            99997543211               11112   22 2222345778999999999999984

This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.

>KOG3347|consensus

Probab=98.04  E-value=1.1e-05  Score=68.56  Aligned_cols=84  Identities=15%  Similarity=0.266  Sum_probs=57.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-h------h-----------HHHHHHHHHHHHhCCCcEEEeCCCCC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-G------S-----------WQKCVSVMKAALDSGLSVVVDNTNPD  334 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~------~-----------~~~~~~~~~~~l~~g~~vIiD~tn~~  334 (369)
                      +-|+++|-||+||||++.++++..+..+|+..++ +      .           -++..+.+...+..| ..|||.-.-+
T Consensus         8 PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~l~~gyDE~y~c~i~DEdkv~D~Le~~m~~G-g~IVDyHgCd   86 (176)
T KOG3347|consen    8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENNLYEGYDEEYKCHILDEDKVLDELEPLMIEG-GNIVDYHGCD   86 (176)
T ss_pred             CCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhcchhcccccccCccccHHHHHHHHHHHHhcC-CcEEeecccC
Confidence            3589999999999999999999999999986554 2      1           145567777777776 4666632211


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         335 KESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       335 ~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      - .-.+|..         .+|++.||.++...|
T Consensus        87 ~-Fperwfd---------lVvVLr~~~s~LY~R  109 (176)
T KOG3347|consen   87 F-FPERWFD---------LVVVLRTPNSVLYDR  109 (176)
T ss_pred             c-cchhhee---------EEEEEecCchHHHHH
Confidence            0 0122332         477888888877766

>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed

Probab=98.04  E-value=3.1e-05  Score=74.63  Aligned_cols=36  Identities=25%  Similarity=0.474  Sum_probs=33.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      ++.+|+++||+|||||++|..|++.++..+|+.|.+
T Consensus         3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~   38 (307)
T PRK00091          3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSM   38 (307)
T ss_pred             CceEEEEECCCCcCHHHHHHHHHHhCCCcEEecccc
Confidence            567999999999999999999999999999999985

>PRK14734 coaE dephospho-CoA kinase; Provisional

Probab=98.02  E-value=1.9e-05  Score=71.53  Aligned_cols=33  Identities=24%  Similarity=0.340  Sum_probs=30.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      .+|.++|.+||||||+++.|.. .|+.+|+.|.+
T Consensus         2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i   34 (200)
T PRK14734          2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQV   34 (200)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHH
Confidence            4789999999999999999997 79999999986

>PTZ00301 uridine kinase; Provisional

Probab=97.98  E-value=3e-05  Score=70.78  Aligned_cols=34  Identities=29%  Similarity=0.450  Sum_probs=27.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC-------CcEEEeCCcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL-------NYTTVNRDTL  306 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~-------~~~~i~~D~~  306 (369)
                      .+|-+.|+|||||||+|+.|.+.+       .+.+++.|.+
T Consensus         4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~y   44 (210)
T PTZ00301          4 TVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFY   44 (210)
T ss_pred             EEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCC
Confidence            688999999999999999887653       1347777776

>KOG1615|consensus

Probab=97.98  E-value=1e-05  Score=71.38  Aligned_cols=77  Identities=18%  Similarity=0.293  Sum_probs=57.5

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEec------------------CCC
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVAT------------------QYD  116 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~~~~~~~------------------~~~  116 (369)
                      +-||+++....|+++|.+++++|-            -|...++.+..+||||+.-+++.                  -.+
T Consensus        89 lT~Gi~eLv~~L~~~~~~v~liSG------------GF~~~i~~Va~~Lgi~~~n~yAN~l~fd~~Gk~~gfd~~~ptsd  156 (227)
T KOG1615|consen   89 LTPGIRELVSRLHARGTQVYLISG------------GFRQLIEPVAEQLGIPKSNIYANELLFDKDGKYLGFDTNEPTSD  156 (227)
T ss_pred             cCCCHHHHHHHHHHcCCeEEEEcC------------ChHHHHHHHHHHhCCcHhhhhhheeeeccCCcccccccCCcccc
Confidence            579999999999999999999997            37888899999999986322221                  013


Q ss_pred             CCCCCchhHHHHHHHHhcCCccccCCccEEeeCcc
Q psy4598         117 RYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAA  151 (369)
Q Consensus       117 ~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~  151 (369)
                      .-+|+  ..+..+.+      +.+.+.++||||-+
T Consensus       157 sggKa--~~i~~lrk------~~~~~~~~mvGDGa  183 (227)
T KOG1615|consen  157 SGGKA--EVIALLRK------NYNYKTIVMVGDGA  183 (227)
T ss_pred             CCccH--HHHHHHHh------CCChheeEEecCCc
Confidence            33563  44444444      46778999999999

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=97.97  E-value=4.2e-05  Score=69.55  Aligned_cols=35  Identities=20%  Similarity=0.345  Sum_probs=30.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCC---cEEEeCCcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLN---YTTVNRDTL  306 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~---~~~i~~D~~  306 (369)
                      ..+|-+.|.+||||||+|+.|.+.++   ...|+.|++
T Consensus         8 ~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~Y   45 (218)
T COG0572           8 VIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDY   45 (218)
T ss_pred             eEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeecccc
Confidence            46888999999999999999999875   458899987

>PLN02165 adenylate isopentenyltransferase

Probab=97.96  E-value=5.5e-05  Score=73.25  Aligned_cols=35  Identities=29%  Similarity=0.545  Sum_probs=32.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      ..+|+|+||+|||||++|..|++.++..+|+.|.+
T Consensus        43 g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~   77 (334)
T PLN02165         43 DKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM   77 (334)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence            35899999999999999999999999999999976

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.96  E-value=3.7e-05  Score=68.04  Aligned_cols=90  Identities=18%  Similarity=0.311  Sum_probs=58.8

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCC---------------------cEEEeCCcchh-----------------HHHH
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLN---------------------YTTVNRDTLGS-----------------WQKC  312 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~---------------------~~~i~~D~~~~-----------------~~~~  312 (369)
                      +..+++|+||+|+||||+.+.|.+..+                     +.+++.+.+..                 |-..
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYGT~   82 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYGTS   82 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhcCeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCcccCc
Confidence            457999999999999999999987652                     23333333311                 2334


Q ss_pred             HHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCC-HHHHHHH
Q psy4598         313 VSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNIS-KEHAKHN  367 (369)
Q Consensus       313 ~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~-~e~~~~R  367 (369)
                      ...+...++.|..||+|-...   .   .+.+-+... +++.|++.+| .+++.+|
T Consensus        83 ~~~ve~~~~~G~~vildId~q---G---a~qvk~~~p-~~v~IFi~pPs~eeL~~R  131 (191)
T COG0194          83 REPVEQALAEGKDVILDIDVQ---G---ALQVKKKMP-NAVSIFILPPSLEELERR  131 (191)
T ss_pred             HHHHHHHHhcCCeEEEEEehH---H---HHHHHHhCC-CeEEEEEcCCCHHHHHHH
Confidence            567788899999999986542   1   122222233 6777777766 4666655

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.96  E-value=2.6e-05  Score=66.20  Aligned_cols=83  Identities=14%  Similarity=0.314  Sum_probs=53.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCc---EEE--------------------eCCcchh-----------------HHHHH
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNY---TTV--------------------NRDTLGS-----------------WQKCV  313 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~---~~i--------------------~~D~~~~-----------------~~~~~  313 (369)
                      +|+|+||+||||||+++.|++.++.   ..+                    +.+.+..                 |....
T Consensus         1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg~~~   80 (137)
T cd00071           1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSK   80 (137)
T ss_pred             CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEecCcH
Confidence            4789999999999999999987431   111                    1111100                 11234


Q ss_pred             HHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHH
Q psy4598         314 SVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEH  363 (369)
Q Consensus       314 ~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~  363 (369)
                      +.+.+.++.|+.+|+|...   .....    +++......+|++.+|+++
T Consensus        81 ~~i~~~~~~g~~~il~~~~---~~~~~----l~~~~~~~~~I~i~~~~~~  123 (137)
T cd00071          81 AAVEEALAEGKIVILEIDV---QGARQ----VKKSYPDAVSIFILPPDYV  123 (137)
T ss_pred             HHHHHHHhCCCeEEEEecH---HHHHH----HHHcCCCeEEEEEECCCeE
Confidence            5577788899999999643   33333    3446678889999988543

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PLN02422 dephospho-CoA kinase

Probab=97.94  E-value=3.7e-05  Score=71.07  Aligned_cols=33  Identities=24%  Similarity=0.359  Sum_probs=30.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      .+|.++|.+||||||+++.|. .+|+.+++.|.+
T Consensus         2 ~~igltG~igsGKstv~~~l~-~~g~~~idaD~~   34 (232)
T PLN02422          2 RVVGLTGGIASGKSTVSNLFK-SSGIPVVDADKV   34 (232)
T ss_pred             eEEEEECCCCCCHHHHHHHHH-HCCCeEEehhHH
Confidence            478999999999999999999 579999999997

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=97.94  E-value=3.3e-05  Score=68.61  Aligned_cols=34  Identities=26%  Similarity=0.401  Sum_probs=29.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG  307 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~  307 (369)
                      +|.++|+|||||||+|+.|++.+     ++.+|+.|.+.
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~   39 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY   39 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence            47899999999999999999874     57889988873

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional

Probab=97.92  E-value=4.3e-05  Score=78.28  Aligned_cols=35  Identities=20%  Similarity=0.405  Sum_probs=32.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      +.+|.+.|+|||||||+++.|++.+++.+++.|.+
T Consensus       284 ~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~  318 (512)
T PRK13477        284 QPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAM  318 (512)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCce
Confidence            46899999999999999999999999999998876

>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]

Probab=97.91  E-value=4.2e-05  Score=65.42  Aligned_cols=118  Identities=22%  Similarity=0.284  Sum_probs=83.6

Q ss_pred             CCceEEEEecCCceeecCCCCCC-CCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHH
Q psy4598          23 NSAKIASFDLDGTLITTKSGKVF-PVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIK  101 (369)
Q Consensus        23 ~~~k~~~fDlDgTLi~~~sg~~~-~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~  101 (369)
                      .+.|.++||.||||.+-   +.| ..+-+..+.+.--=--.|+.|.+.|.++.|+|-..       +     ..++.-.+
T Consensus         6 ~~IkLli~DVDGvLTDG---~ly~~~~Gee~KaFnv~DG~Gik~l~~~Gi~vAIITGr~-------s-----~ive~Ra~   70 (170)
T COG1778           6 KNIKLLILDVDGVLTDG---KLYYDENGEEIKAFNVRDGHGIKLLLKSGIKVAIITGRD-------S-----PIVEKRAK   70 (170)
T ss_pred             hhceEEEEeccceeecC---eEEEcCCCceeeeeeccCcHHHHHHHHcCCeEEEEeCCC-------C-----HHHHHHHH
Confidence            35689999999999753   444 44444554333212235888999999999999632       1     12344568


Q ss_pred             HcCCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         102 SLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       102 ~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      .||+.. +|.+      .+-+-..++.+++++    +++++++.||||..                .|+-.=.++|+.|.
T Consensus        71 ~LGI~~-~~qG------~~dK~~a~~~L~~~~----~l~~e~~ayiGDD~----------------~Dlpvm~~vGls~a  123 (170)
T COG1778          71 DLGIKH-LYQG------ISDKLAAFEELLKKL----NLDPEEVAYVGDDL----------------VDLPVMEKVGLSVA  123 (170)
T ss_pred             HcCCce-eeec------hHhHHHHHHHHHHHh----CCCHHHhhhhcCcc----------------ccHHHHHHcCCccc
Confidence            888752 2222      233467889999986    79999999999999                89999999999985


Q ss_pred             C
Q psy4598         182 T  182 (369)
Q Consensus       182 ~  182 (369)
                      -
T Consensus       124 ~  124 (170)
T COG1778         124 V  124 (170)
T ss_pred             c
Confidence            3

>smart00072 GuKc Guanylate kinase homologues

Probab=97.89  E-value=8.9e-05  Score=66.00  Aligned_cols=89  Identities=12%  Similarity=0.322  Sum_probs=56.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCC--cEEE---------------------eCCcchh-----------------HHH
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLN--YTTV---------------------NRDTLGS-----------------WQK  311 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~--~~~i---------------------~~D~~~~-----------------~~~  311 (369)
                      .++|+++|||||||+|+++.|.+...  ....                     +.+.+..                 |..
T Consensus         2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt   81 (184)
T smart00072        2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT   81 (184)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence            36899999999999999999988741  2111                     1111110                 112


Q ss_pred             HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEe-CCHHHHHHH
Q psy4598         312 CVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMN-ISKEHAKHN  367 (369)
Q Consensus       312 ~~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~-~~~e~~~~R  367 (369)
                      ....+.+.++.|+.+|+|...   .....+.    +......+|++. ++.+++.+|
T Consensus        82 ~~~~i~~~~~~~~~~ild~~~---~~~~~l~----~~~~~~~vIfi~~~s~~~l~~r  131 (184)
T smart00072       82 SKETIRQVAEQGKHCLLDIDP---QGVKQLR----KAQLYPIVIFIAPPSSEELERR  131 (184)
T ss_pred             CHHHHHHHHHcCCeEEEEECH---HHHHHHH----HhCCCcEEEEEeCcCHHHHHHH
Confidence            234567788889999999763   2233332    234455688887 555666666

Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.

>PRK14732 coaE dephospho-CoA kinase; Provisional

Probab=97.89  E-value=3.9e-05  Score=69.27  Aligned_cols=32  Identities=25%  Similarity=0.356  Sum_probs=28.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      +|.++|.+||||||+++.+.+ .+..+++.|.+
T Consensus         1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i   32 (196)
T PRK14732          1 LIGITGMIGGGKSTALKILEE-LGAFGISADRL   32 (196)
T ss_pred             CEEEECCCCccHHHHHHHHHH-CCCEEEecchH
Confidence            478999999999999998865 68999999997

>PF08235 LNS2: LNS2 (Lipin/Ned1/Smp2); InterPro: IPR013209 This domain is found in Saccharomyces cerevisiae (Baker's yeast) protein SMP2, proteins with an N-terminal lipin domain (IPR007651 from INTERPRO) and phosphatidylinositol transfer proteins []

Probab=97.87  E-value=0.00013  Score=63.18  Aligned_cols=123  Identities=18%  Similarity=0.363  Sum_probs=76.2

Q ss_pred             EEEEecCCceeecC-CCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHc--
Q psy4598          27 IASFDLDGTLITTK-SGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSL--  103 (369)
Q Consensus        27 ~~~fDlDgTLi~~~-sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l--  103 (369)
                      ++++|+||||..+. -|...+..-.||  .+|||.+..+.++++||+++-+|..+         ..........|..+  
T Consensus         1 VVvsDIDGTiT~SD~~G~i~~~~G~d~--~h~g~~~l~~~i~~~GY~ilYlTaRp---------~~qa~~Tr~~L~~~~q   69 (157)
T PF08235_consen    1 VVVSDIDGTITKSDVLGHILPILGKDW--THPGAAELYRKIADNGYKILYLTARP---------IGQANRTRSWLAQHQQ   69 (157)
T ss_pred             CEEEeccCCcCccchhhhhhhccCchh--hhhcHHHHHHHHHHCCeEEEEECcCc---------HHHHHHHHHHHHHHHh
Confidence            57899999998764 233344445565  59999999999999999999999843         12233344445544  


Q ss_pred             ---CCCeE-EEEecC--------CCCCCCCchhHHHHHH-HHhcCCccccCCccEE--eeCccccccccCCCCCCCCCcc
Q psy4598         104 ---NVPVQ-MFVATQ--------YDRYRKPVPGMWEYLS-QEKNGDLAIDISQSFY--AGDAAGRAANWAPKKKKDFACT  168 (369)
Q Consensus       104 ---~i~~~-~~~~~~--------~~~~rKP~~gm~~~~~-~~~~~~~~i~~~~s~~--VGD~~gr~~~~~~~~~~d~s~~  168 (369)
                         ++|-- ++.++.        +...+  +|.-|...+ +.+.. +-.....-|+  .|.+.                +
T Consensus        70 ~~~~lP~Gpv~~sP~~l~~al~rEvi~~--~p~~fK~~~L~~l~~-~f~~~~~pf~agfGN~~----------------t  130 (157)
T PF08235_consen   70 QGHNLPDGPVLLSPDSLFSALHREVISK--DPEEFKIACLRDLRA-LFPPDGNPFYAGFGNRS----------------T  130 (157)
T ss_pred             CCccCCCCCEEECCcchhhhhhcccccc--ChHHHHHHHHHHHHH-hcCCCCCeEEEecCCcH----------------H
Confidence               66643 444432        23233  444444332 22100 0011244455  56776                8


Q ss_pred             cHHHHHhCCCC
Q psy4598         169 DHLFAFNLNLA  179 (369)
Q Consensus       169 D~~~A~n~Gi~  179 (369)
                      |+.+=.++||+
T Consensus       131 Dv~aY~~vGip  141 (157)
T PF08235_consen  131 DVIAYKAVGIP  141 (157)
T ss_pred             HHHHHHHcCCC
Confidence            99999999998

SMP2 is involved in plasmid maintenance and respiration []. Lipin proteins are involved in adipose tissue development and insulin resistance [].

>PRK14733 coaE dephospho-CoA kinase; Provisional

Probab=97.87  E-value=5.7e-05  Score=68.57  Aligned_cols=36  Identities=28%  Similarity=0.275  Sum_probs=33.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      .|..|-|+|.+||||||+++.|.+.+++.+++.|.+
T Consensus         5 ~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i   40 (204)
T PRK14733          5 NTYPIGITGGIASGKSTATRILKEKLNLNVVCADTI   40 (204)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHH
Confidence            356899999999999999999999889999999987

>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]

Probab=97.85  E-value=0.00012  Score=66.22  Aligned_cols=35  Identities=23%  Similarity=0.470  Sum_probs=32.8

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      |+.+|-++|.|||||||+++.+.+ .|+.++++|.+
T Consensus         1 ~~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v   35 (201)
T COG0237           1 MMLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDV   35 (201)
T ss_pred             CceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHH
Confidence            467899999999999999999999 99999999987

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.84  E-value=4.4e-05  Score=63.12  Aligned_cols=57  Identities=23%  Similarity=0.363  Sum_probs=38.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhccCCcEE--EeCCcch------hHHHHHHHHHHHHhCC--CcEEEeCC
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPLNYTT--VNRDTLG------SWQKCVSVMKAALDSG--LSVVVDNT  331 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~~~~~--i~~D~~~------~~~~~~~~~~~~l~~g--~~vIiD~t  331 (369)
                      |+|.|+||+||||+++.+++.++..+  ++...+.      ..+.+.....++-..+  ..+++|+.
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~   67 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEI   67 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETG
T ss_pred             CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccc
Confidence            68999999999999999999987544  5554443      2333444444444443  35567764

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=97.84  E-value=4.3e-05  Score=68.63  Aligned_cols=33  Identities=24%  Similarity=0.431  Sum_probs=27.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCC---------cEEEeCCcc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLN---------YTTVNRDTL  306 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~---------~~~i~~D~~  306 (369)
                      +|-++|+|||||||+|+.|+..++         ...++.|.+
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~   42 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDF   42 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGG
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeeccc
Confidence            588999999999999999998764         456677765

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>PRK14731 coaE dephospho-CoA kinase; Provisional

Probab=97.84  E-value=7.9e-05  Score=67.82  Aligned_cols=34  Identities=21%  Similarity=0.293  Sum_probs=30.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      +.+|.++|.+||||||+++.|.. .++.+++.|.+
T Consensus         5 ~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D~i   38 (208)
T PRK14731          5 PFLVGVTGGIGSGKSTVCRFLAE-MGCELFEADRV   38 (208)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH-CCCeEEeccHH
Confidence            46789999999999999999996 78899998865

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.83  E-value=7.9e-05  Score=66.93  Aligned_cols=33  Identities=21%  Similarity=0.507  Sum_probs=28.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccC---CcEEEeCCcc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPL---NYTTVNRDTL  306 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~---~~~~i~~D~~  306 (369)
                      +|.|+|++||||||+++.|...+   .+.+++.|.+
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~   36 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSY   36 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccc
Confidence            47899999999999999998875   4778888875

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK)

Probab=97.82  E-value=0.00021  Score=65.52  Aligned_cols=25  Identities=24%  Similarity=0.371  Sum_probs=22.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNY  298 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~  298 (369)
                      +|++-|.-||||||+++.|++.++.
T Consensus         1 ~I~iEG~~GsGKSTl~~~L~~~l~~   25 (219)
T cd02030           1 VITVDGNIASGKGKLAKELAEKLGM   25 (219)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHhCC
Confidence            4789999999999999999987654

Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.76  E-value=7e-05  Score=68.82  Aligned_cols=33  Identities=24%  Similarity=0.316  Sum_probs=27.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccC-------CcEEEeCCcc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPL-------NYTTVNRDTL  306 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~-------~~~~i~~D~~  306 (369)
                      +|-+.|++||||||+++.|+..+       .+.+|+.|.+
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f   40 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGF   40 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcc
Confidence            46789999999999999998765       3577888876

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=97.75  E-value=9e-05  Score=66.87  Aligned_cols=36  Identities=22%  Similarity=0.448  Sum_probs=31.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG  307 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~  307 (369)
                      |.+|+|+||+|+||||.+.+|+.++     ...+++.|.+|
T Consensus         1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R   41 (196)
T PF00448_consen    1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYR   41 (196)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSS
T ss_pred             CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCC
Confidence            6799999999999999999998753     57899999985

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase

Probab=97.75  E-value=0.00025  Score=66.10  Aligned_cols=45  Identities=20%  Similarity=0.107  Sum_probs=36.7

Q ss_pred             CCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         118 YRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       118 ~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      .+.++...++++++.+    ++++++++++||+.                .|+.+..+++...+.
T Consensus       164 ~~~~K~~al~~l~~~~----~i~~~~~i~~GD~~----------------ND~~ml~~~~~~~va  208 (249)
T TIGR01485       164 QGSGKGQALQYLLQKL----AMEPSQTLVCGDSG----------------NDIELFEIGSVRGVI  208 (249)
T ss_pred             CCCChHHHHHHHHHHc----CCCccCEEEEECCh----------------hHHHHHHccCCcEEE
Confidence            3567788888888885    68899999999999                899999986655443

Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.

>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]

Probab=97.73  E-value=0.00014  Score=65.57  Aligned_cols=97  Identities=18%  Similarity=0.237  Sum_probs=61.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEE----eCCcch--------hHH---------HHHHHHHHHHhC-----CCc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTV----NRDTLG--------SWQ---------KCVSVMKAALDS-----GLS  325 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i----~~D~~~--------~~~---------~~~~~~~~~l~~-----g~~  325 (369)
                      ..+|++.|+-|+||||+|+.|+++++...+    .-+.+-        .|.         .-.+....+.+.     +++
T Consensus         4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~E~vednp~L~~FY~d~~~yaf~~QiyFL~~Rfk~~k~~~~~~~~i~drs   83 (216)
T COG1428           4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVFYELVEDNPFLDLFYEDPERYAFLLQIYFLLNRFKKIKKALSDKNNILDRS   83 (216)
T ss_pred             ccEEEEecccccCHHHHHHHHHHHhCCceeeecccCChHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhcccccccCcc
Confidence            368999999999999999999999874333    233321        110         011222233333     334


Q ss_pred             EEEeC----------CCCCHHHHHHHHHHHH--------hcCCeEEEEEEeCCHHHHHHHc
Q psy4598         326 VVVDN----------TNPDKESRHRYIEAAK--------QHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       326 vIiD~----------tn~~~~~r~~~~~la~--------~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      |+-|.          .+.++..-..+..+..        ..+.|=.+|+++|+.++.++|-
T Consensus        84 I~eD~~lf~~~~~~~g~~~~~e~~~Y~~L~~~~~~~l~~~p~~PdllIyLd~~~e~~l~RI  144 (216)
T COG1428          84 IFEDYFLFAKLNFAKGTLSPSEFKYYDDLYDNMLEELPYLPGRPDLLIYLDASLETLLRRI  144 (216)
T ss_pred             hhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHH
Confidence            55554          3445666655555544        2357889999999999988873

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=97.71  E-value=0.00021  Score=63.43  Aligned_cols=89  Identities=20%  Similarity=0.415  Sum_probs=56.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCC-----------------------cEEEeCCcchh-----------------HHH
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLN-----------------------YTTVNRDTLGS-----------------WQK  311 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~-----------------------~~~i~~D~~~~-----------------~~~  311 (369)
                      +++|+|+||+||||||+++.|.+..+                       +.+++.+.+..                 |-.
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YGt   81 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYGT   81 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhhh
Confidence            46799999999999999999987642                       12222222210                 111


Q ss_pred             HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCC-HHHHHHH
Q psy4598         312 CVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNIS-KEHAKHN  367 (369)
Q Consensus       312 ~~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~-~e~~~~R  367 (369)
                      ....+...++.|+.+|+|..   ...-..+    +..+....+|++.+| .+.+.+|
T Consensus        82 ~~~~i~~~~~~gk~~il~~~---~~g~~~L----~~~~~~~~~IfI~~~s~~~l~~~  131 (183)
T PF00625_consen   82 SKSAIDKVLEEGKHCILDVD---PEGVKQL----KKAGFNPIVIFIKPPSPEVLKRR  131 (183)
T ss_dssp             EHHHHHHHHHTTTEEEEEET---HHHHHHH----HHCTTTEEEEEEEESSHHHHHHH
T ss_pred             ccchhhHhhhcCCcEEEEcc---HHHHHHH----HhcccCceEEEEEccchHHHHHH
Confidence            24667788899999999965   2333332    334777778888655 5666655

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]

Probab=97.71  E-value=0.00022  Score=65.86  Aligned_cols=88  Identities=16%  Similarity=0.352  Sum_probs=61.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCc-EEEeCCcchh---------------------HHH-----------------
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNY-TTVNRDTLGS---------------------WQK-----------------  311 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~-~~i~~D~~~~---------------------~~~-----------------  311 (369)
                      .|.+|++.|+||.||||+|..++.+++. ..|++|.++.                     |+.                 
T Consensus        88 ~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF~dq  167 (299)
T COG2074          88 RPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGFEDQ  167 (299)
T ss_pred             CCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhHHHH
Confidence            3689999999999999999999999986 4678888741                     221                 


Q ss_pred             -------HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHH
Q psy4598         312 -------CVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEH  363 (369)
Q Consensus       312 -------~~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~  363 (369)
                             +...+..++..|.++||++...-+...+.-    .. +..+..+++.+++|.
T Consensus       168 a~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~~----~~-~~n~~~~~l~i~dee  221 (299)
T COG2074         168 ASAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKEE----AL-GNNVFMFMLYIADEE  221 (299)
T ss_pred             hHHHHHHHHHHHHHHHhcCcceEEEeeeeccccccHh----hh-ccceEEEEEEeCCHH
Confidence                   134457788999999999998765443321    11 344555555555443

>PLN02772 guanylate kinase

Probab=97.71  E-value=0.00013  Score=71.96  Aligned_cols=114  Identities=16%  Similarity=0.234  Sum_probs=69.9

Q ss_pred             cccccccccccchhhhhhhcccc-ccEEEEEEcCCCCcHHHHHHHHhccCC-----------------------cEEEeC
Q psy4598         248 NYTTVNRDTLGSWQKCVSVMKAA-LDSVLIMIGSQGSGKSSFVSTYLKPLN-----------------------YTTVNR  303 (369)
Q Consensus       248 ~~~~i~r~~~~~~~~~~~~~~~~-~~~lIll~G~pGSGKSTla~~L~~~~~-----------------------~~~i~~  303 (369)
                      -|++.++..+......+....++ ..++|+|+||+|+||||+.+.|.+...                       +.+++.
T Consensus       110 ~~~~~~~~~~~~eV~~~~~~~~~~~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~  189 (398)
T PLN02772        110 PFVREQKKLLGTEVVAWSKGVRGNAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREMEKDGVHYHFTER  189 (398)
T ss_pred             HHHHhhcccccceeeecccCCCCCCCcEEEEECCCCCCHHHHHHHHhhhccccccccccccCCCCcccccCCceEeeCCH
Confidence            45666666666666566655555 557999999999999999999977531                       111111


Q ss_pred             Ccch-----------------hHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHH
Q psy4598         304 DTLG-----------------SWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKH  366 (369)
Q Consensus       304 D~~~-----------------~~~~~~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~  366 (369)
                      +.+.                 .|-.-.+.+...+++|+.+|+|-   +......+.+..   --.+.++.+..+.+++.+
T Consensus       190 eeFe~~i~~g~FlE~~e~~Gn~YGTsk~~V~~vl~~Gk~vILdL---D~qGar~Lr~~~---l~~v~IFI~PPSlEeLe~  263 (398)
T PLN02772        190 SVMEKEIKDGKFLEFASVHGNLYGTSIEAVEVVTDSGKRCILDI---DVQGARSVRASS---LEAIFIFICPPSMEELEK  263 (398)
T ss_pred             HHHHHHHHhCccceeeeecCccccccHHHHHHHHHhCCcEEEeC---CHHHHHHHHHhc---CCeEEEEEeCCCHHHHHH
Confidence            2221                 02223466677889999999994   334455544321   123444444556777776


Q ss_pred             H
Q psy4598         367 N  367 (369)
Q Consensus       367 R  367 (369)
                      |
T Consensus       264 R  264 (398)
T PLN02772        264 R  264 (398)
T ss_pred             H
Confidence            6

>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=97.71  E-value=0.00011  Score=69.50  Aligned_cols=59  Identities=24%  Similarity=0.351  Sum_probs=45.9

Q ss_pred             CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHc
Q psy4598          24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSL  103 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l  103 (369)
                      +.|++++||||||+....            ...|.+.++|++|+++|++++|+|+.+            ...+..+++.+
T Consensus         3 ~~kli~~DlDGTLl~~~~------------~~~~~~~~ai~~l~~~Gi~~~iaTgR~------------~~~~~~~~~~l   58 (273)
T PRK00192          3 MKLLVFTDLDGTLLDHHT------------YSYEPAKPALKALKEKGIPVIPCTSKT------------AAEVEVLRKEL   58 (273)
T ss_pred             cceEEEEcCcccCcCCCC------------cCcHHHHHHHHHHHHCCCEEEEEcCCC------------HHHHHHHHHHc
Confidence            468999999999996431            157889999999999999999999953            12345567777


Q ss_pred             CCC
Q psy4598         104 NVP  106 (369)
Q Consensus       104 ~i~  106 (369)
                      ++.
T Consensus        59 ~l~   61 (273)
T PRK00192         59 GLE   61 (273)
T ss_pred             CCC
Confidence            763

>KOG0234|consensus

Probab=97.70  E-value=0.00013  Score=72.22  Aligned_cols=97  Identities=23%  Similarity=0.348  Sum_probs=71.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-----h----------------------hHHHHHHH----HHHHH
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-----G----------------------SWQKCVSV----MKAAL  320 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-----~----------------------~~~~~~~~----~~~~l  320 (369)
                      +.+|+|+|+|++|||.++.++.+.++|.-++.-.+     +                      ...++...    ....+
T Consensus        28 ~~~ivmvglpA~gKt~is~kl~ryl~w~~~~tk~fn~g~yrr~~~~~~~s~~ff~p~n~~~~~lr~~~a~~~l~D~~~~l  107 (438)
T KOG0234|consen   28 KLVIVMVGLPARGKTYISSKLTRYLNWLGVNTKVFNVGEYRREAVKKVDSEPFFLPDNAEASKLRKQLALLALNDLLHFL  107 (438)
T ss_pred             ceEEEEecCCccCcchhhhhHHHHHHhhccccccccHHHHHHHHhcccccccccccCChhhhhhhHHHHHHHhhhHHHHh
Confidence            57999999999999999999998765433332222     0                      01122221    22222


Q ss_pred             --hCCCcEEEeCCCCCHHHHHHHHHHHH-hcCCeEEEEEEeCCHHHHHHHc
Q psy4598         321 --DSGLSVVVDNTNPDKESRHRYIEAAK-QHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       321 --~~g~~vIiD~tn~~~~~r~~~~~la~-~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                        ..|...|.|+||.++..|..+..+++ +.++.+.++.-.|+++..+.+|
T Consensus       108 ~~~~g~vai~Datnttr~rrk~i~~~~~~~~~~kv~FiEs~c~D~~ii~~N  158 (438)
T KOG0234|consen  108 IKENGQVAIFDATNTTRERRKRIIDFAEREAGFKVFFIESVCNDPNLINNN  158 (438)
T ss_pred             hccCCceEEecCCCCCHHHHHHHHHHHhhcCCceEEEEEeecCCchhHHhh
Confidence              45789999999999999999999996 8899999999989888777665

>COG1660 Predicted P-loop-containing kinase [General function prediction only]

Probab=97.70  E-value=0.00037  Score=64.61  Aligned_cols=93  Identities=19%  Similarity=0.233  Sum_probs=61.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc--hhHHHHHHHHHHHH--hCCCcEEEeCCCC-CHHHHHHHHHHHHh
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL--GSWQKCVSVMKAAL--DSGLSVVVDNTNP-DKESRHRYIEAAKQ  347 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~--~~~~~~~~~~~~~l--~~g~~vIiD~tn~-~~~~r~~~~~la~~  347 (369)
                      .+|+++|.+|||||+-.+.|.. +|+..+  |.+  .-..++.+.+...-  .....|++|--+. ........+...++
T Consensus         2 ~lvIVTGlSGAGKsvAl~~lED-lGyycv--DNLPp~Llp~~~~~~~~~~~~~~kvAv~iDiRs~~~~~~l~~~l~~l~~   78 (286)
T COG1660           2 RLVIVTGLSGAGKSVALRVLED-LGYYCV--DNLPPQLLPKLADLMLTLESRITKVAVVIDVRSREFFGDLEEVLDELKD   78 (286)
T ss_pred             cEEEEecCCCCcHHHHHHHHHh-cCeeee--cCCCHHHHHHHHHHHhhcccCCceEEEEEecccchhHHHHHHHHHHHHh
Confidence            5899999999999998888754 455444  444  22334444333111  1234688897664 23333455555666


Q ss_pred             c-CCeEEEEEEeCCHHHHHHHc
Q psy4598         348 H-GVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       348 ~-~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      . ++.+.+++++++.++...|-
T Consensus        79 ~~~~~~~iLFLeA~~~~Lv~RY  100 (286)
T COG1660          79 NGDIDPRVLFLEADDETLVRRY  100 (286)
T ss_pred             cCCCCceEEEEECchhHHHHHH
Confidence            6 47799999999999998884

>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2

Probab=97.69  E-value=6.1e-05  Score=67.03  Aligned_cols=32  Identities=25%  Similarity=0.535  Sum_probs=29.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      +|-++|..||||||+++.|.+ +|+.+++.|.+
T Consensus         2 iIglTG~igsGKStv~~~l~~-~G~~vidaD~i   33 (180)
T PF01121_consen    2 IIGLTGGIGSGKSTVSKILAE-LGFPVIDADEI   33 (180)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH-TT-EEEEHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH-CCCCEECccHH
Confidence            688999999999999999999 99999999987

7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.

>PRK13974 thymidylate kinase; Provisional

Probab=97.69  E-value=0.00032  Score=63.94  Aligned_cols=96  Identities=22%  Similarity=0.238  Sum_probs=56.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCc---------EEEeC---Cc-c----h------------------------hHHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNY---------TTVNR---DT-L----G------------------------SWQK  311 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~---------~~i~~---D~-~----~------------------------~~~~  311 (369)
                      .+|++.|++||||||.++.|++.+..         ++...   +. +    +                        .++.
T Consensus         4 ~~i~~eG~dGsGKsT~~~~l~~~l~~~g~~~~~~~~~~~~~p~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~adr~~~   83 (212)
T PRK13974          4 KFIVLEGIDGCGKTTQIDHLSKWLPSSGLMPKGAKLIITREPGGTLLGKSLRELLLDTSKDNSPSPLAELLLYAADRAQH   83 (212)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhcCccccCCeeeeeeCCCCCchHHHHHHHHcCCCcccCCCHHHHHHHHHHHHHHH
Confidence            68999999999999999999976521         11110   10 0    0                        0112


Q ss_pred             HHHHHHHHHhCCCcEEEeCCCCC------------HHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         312 CVSVMKAALDSGLSVVVDNTNPD------------KESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       312 ~~~~~~~~l~~g~~vIiD~tn~~------------~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      +......++..|..||.|-...+            .+.-..+...+...-.+-.++++++|.+++.+|.
T Consensus        84 ~~~~i~~~l~~g~~Vi~DRy~~S~~ay~g~~r~~~~~~~~~l~~~~~~~~~pd~~i~ld~~~~~~~~R~  152 (212)
T PRK13974         84 VSKIIRPALENGDWVISDRFSGSTLAYQGYGRGLDLELIKNLESIATQGLSPDLTFFLEISVEESIRRR  152 (212)
T ss_pred             HHHHHHHHHHCCCEEEEcCchhhHHHHccccCCCCHHHHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHH
Confidence            22234556778887777654221            1122233322222124667999999999999883

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=97.69  E-value=0.00032  Score=64.70  Aligned_cols=38  Identities=21%  Similarity=0.280  Sum_probs=29.5

Q ss_pred             ccccEEEEEEcCCCCcHHHHHHHHhccCC-----cEE-EeCCcc
Q psy4598         269 AALDSVLIMIGSQGSGKSSFVSTYLKPLN-----YTT-VNRDTL  306 (369)
Q Consensus       269 ~~~~~lIll~G~pGSGKSTla~~L~~~~~-----~~~-i~~D~~  306 (369)
                      ...+.+|.+.|++||||||+++.|+..+.     ..+ ++.|.+
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~   73 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGF   73 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccc
Confidence            45578999999999999999999987642     233 666664

>PLN02840 tRNA dimethylallyltransferase

Probab=97.68  E-value=0.00011  Score=73.34  Aligned_cols=35  Identities=29%  Similarity=0.523  Sum_probs=32.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      ..+|++.||+||||||++..|++.++..+|+.|.+
T Consensus        21 ~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~   55 (421)
T PLN02840         21 EKVIVISGPTGAGKSRLALELAKRLNGEIISADSV   55 (421)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHCCCCeEecccc
Confidence            46899999999999999999999999999999985

>TIGR01511 ATPase-IB1_Cu copper-(or silver)-translocating P-type ATPase

Probab=97.68  E-value=0.00013  Score=76.26  Aligned_cols=104  Identities=15%  Similarity=0.164  Sum_probs=73.5

Q ss_pred             ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcC
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLN  104 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~  104 (369)
                      ..++.++.||+++.--.       ..|  .++|++.+.|++|++.|++++|+||..            +...+.+++.+|
T Consensus       385 ~~~~~~~~~~~~~g~~~-------~~d--~l~~~a~e~i~~Lk~~Gi~v~ilSgd~------------~~~a~~ia~~lg  443 (562)
T TIGR01511       385 STSVLVAVNGELAGVFA-------LED--QLRPEAKEVIQALKRRGIEPVMLTGDN------------RKTAKAVAKELG  443 (562)
T ss_pred             CEEEEEEECCEEEEEEE-------ecc--cccHHHHHHHHHHHHcCCeEEEEcCCC------------HHHHHHHHHHcC
Confidence            35677888888764310       111  269999999999999999999999942            345677889999


Q ss_pred             CCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCC
Q psy4598         105 VPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLA  179 (369)
Q Consensus       105 i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~  179 (369)
                      ++   +++.   ...++++.+++.+.        -+.++++||||..                .|+.+++++|+.
T Consensus       444 i~---~~~~---~~p~~K~~~v~~l~--------~~~~~v~~VGDg~----------------nD~~al~~A~vg  488 (562)
T TIGR01511       444 IN---VRAE---VLPDDKAALIKELQ--------EKGRVVAMVGDGI----------------NDAPALAQADVG  488 (562)
T ss_pred             Cc---EEcc---CChHHHHHHHHHHH--------HcCCEEEEEeCCC----------------ccHHHHhhCCEE
Confidence            85   2221   11223344444433        2457899999999                899999999985

One member from Halobacterium is annotated as "molybdenum-binding protein" although no evidence can be found for this classification.

>COG4996 Predicted phosphatase [General function prediction only]

Probab=97.63  E-value=0.0004  Score=57.69  Aligned_cols=110  Identities=26%  Similarity=0.263  Sum_probs=72.5

Q ss_pred             EEEEecCCceeecCCCCC----CCC----Ccccc----ccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHH
Q psy4598          27 IASFDLDGTLITTKSGKV----FPV----DTHDW----KLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQA   94 (369)
Q Consensus        27 ~~~fDlDgTLi~~~sg~~----~~~----~~~d~----~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~   94 (369)
                      ++.||+||||.+.-....    |..    ...|-    ..++|.|.+.|+.++..||-+..+|=+            +..
T Consensus         2 ~i~~d~d~t~wdhh~iSsl~pPf~rVs~n~i~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN------------~~~   69 (164)
T COG4996           2 AIVFDADKTLWDHHNISSLEPPFRRVSSNTIEDSKGREVHLFPDVKETLKWARNSGYILGLASWN------------FED   69 (164)
T ss_pred             cEEEeCCCcccccccchhcCCcceecCccceecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecC------------chH
Confidence            578999999987532111    111    11111    237999999999999999999999941            344


Q ss_pred             HHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHHhc--CCccccCCccEEeeCccc
Q psy4598          95 KAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQEKN--GDLAIDISQSFYAGDAAG  152 (369)
Q Consensus        95 ~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~~~--~~~~i~~~~s~~VGD~~g  152 (369)
                      +.-+.|..+++  +|...+.-  ...+|  -.|+-+++...|  .+..+.|++.+|+.|+.+
T Consensus        70 kA~~aLral~~~~yFhy~Vie--PhP~K--~~ML~~llr~i~~er~~~ikP~~Ivy~DDR~i  127 (164)
T COG4996          70 KAIKALRALDLLQYFHYIVIE--PHPYK--FLMLSQLLREINTERNQKIKPSEIVYLDDRRI  127 (164)
T ss_pred             HHHHHHHHhchhhhEEEEEec--CCChh--HHHHHHHHHHHHHhhccccCcceEEEEecccc
Confidence            45566777776  47755432  11222  347777776554  235788999999999975

>PLN02348 phosphoribulokinase

Probab=97.62  E-value=0.00019  Score=70.86  Aligned_cols=37  Identities=22%  Similarity=0.284  Sum_probs=31.5

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccCC--------------------cEEEeCCcc
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPLN--------------------YTTVNRDTL  306 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~~--------------------~~~i~~D~~  306 (369)
                      ..+.+|-|.|+|||||||+++.|.+.++                    +.+|+.|++
T Consensus        47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDY  103 (395)
T PLN02348         47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDY  103 (395)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccc
Confidence            4567899999999999999999998763                    367888887

>PLN02748 tRNA dimethylallyltransferase

Probab=97.62  E-value=0.00012  Score=74.09  Aligned_cols=37  Identities=24%  Similarity=0.469  Sum_probs=33.6

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      ..+.+|+++|++|||||+||..|++.++..+|+.|.+
T Consensus        20 ~~~~~i~i~GptgsGKs~la~~la~~~~~eii~~Dsm   56 (468)
T PLN02748         20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSM   56 (468)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchh
Confidence            3456899999999999999999999999999999975

>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]

Probab=97.60  E-value=0.00013  Score=63.73  Aligned_cols=81  Identities=17%  Similarity=0.186  Sum_probs=49.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch-h-----------------HHHHHHHHHHHHhCCCcEEEeCCCCC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG-S-----------------WQKCVSVMKAALDSGLSVVVDNTNPD  334 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~-~-----------------~~~~~~~~~~~l~~g~~vIiD~tn~~  334 (369)
                      ++|.++|.||+||||+++.|. .+++.+++.-.+. .                 .+.........+ ...+.|+|.-.  
T Consensus         1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~~~~~~~de~r~s~~vD~d~~~~~le~~~-~~~~~Ivd~H~--   76 (180)
T COG1936           1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKENGLYTEYDELRKSVIVDVDKLRKRLEELL-REGSGIVDSHL--   76 (180)
T ss_pred             CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhcCCeeccCCccceEEeeHHHHHHHHHHHh-ccCCeEeechh--
Confidence            368999999999999999999 7776666654431 0                 122222223333 34467777432  


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         335 KESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       335 ~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                             ..+.   .-.=.+|.+.++++++.+|
T Consensus        77 -------~hl~---~~~dlVvVLR~~p~~L~~R   99 (180)
T COG1936          77 -------SHLL---PDCDLVVVLRADPEVLYER   99 (180)
T ss_pred             -------hhcC---CCCCEEEEEcCCHHHHHHH
Confidence                   1111   1112477888888887776

>PRK04195 replication factor C large subunit; Provisional

Probab=97.57  E-value=0.00041  Score=71.16  Aligned_cols=85  Identities=15%  Similarity=0.201  Sum_probs=53.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEE--EeCCcchhHHHHHHHHHHHHh-------CCCcEEEeCCC-CCH----HH
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTT--VNRDTLGSWQKCVSVMKAALD-------SGLSVVVDNTN-PDK----ES  337 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~--i~~D~~~~~~~~~~~~~~~l~-------~g~~vIiD~tn-~~~----~~  337 (369)
                      +..++|.||||+||||+++.+++.+++.+  ++..+.+....+...+..+..       ....||||... +..    ..
T Consensus        39 ~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~  118 (482)
T PRK04195         39 KKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGG  118 (482)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhH
Confidence            57899999999999999999999886544  444444443333333333321       34467777542 221    33


Q ss_pred             HHHHHHHHHhcCCeEEEEE
Q psy4598         338 RHRYIEAAKQHGVRCIAVH  356 (369)
Q Consensus       338 r~~~~~la~~~~~~v~~v~  356 (369)
                      ...++++.+..+.+++++.
T Consensus       119 ~~aL~~~l~~~~~~iIli~  137 (482)
T PRK04195        119 ARAILELIKKAKQPIILTA  137 (482)
T ss_pred             HHHHHHHHHcCCCCEEEec
Confidence            4566677776666665543

>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase

Probab=97.56  E-value=0.00024  Score=65.52  Aligned_cols=54  Identities=26%  Similarity=0.335  Sum_probs=41.7

Q ss_pred             EEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC
Q psy4598          27 IASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV  105 (369)
Q Consensus        27 ~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i  105 (369)
                      +++|||||||+....             ..|...++|++|+++|++++++|+.+        .    ..+..+++++|+
T Consensus         1 li~~DlDGTLl~~~~-------------~~~~~~~ai~~l~~~G~~~vi~TgR~--------~----~~~~~~~~~lg~   54 (225)
T TIGR02461         1 VIFTDLDGTLLPPGY-------------EPGPAREALEELKDLGFPIVFVSSKT--------R----AEQEYYREELGV   54 (225)
T ss_pred             CEEEeCCCCCcCCCC-------------CchHHHHHHHHHHHCCCEEEEEeCCC--------H----HHHHHHHHHcCC
Confidence            479999999996321             36779999999999999999999843        1    234556788886

Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.

>TIGR00174 miaA tRNA isopentenyltransferase (miaA)

Probab=97.55  E-value=0.00019  Score=68.43  Aligned_cols=33  Identities=27%  Similarity=0.491  Sum_probs=31.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      +|+++||+|||||++|..|++.++..+|+.|.+
T Consensus         1 vi~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~   33 (287)
T TIGR00174         1 VIFIMGPTAVGKSQLAIQLAKKLNAEIISVDSM   33 (287)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCCCcEEEechh
Confidence            479999999999999999999999999999986

Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.

>TIGR01525 ATPase-IB_hvy heavy metal translocating P-type ATPase

Probab=97.55  E-value=0.00028  Score=73.59  Aligned_cols=106  Identities=16%  Similarity=0.184  Sum_probs=72.4

Q ss_pred             ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCC-cEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHc
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDG-YKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSL  103 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G-~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l  103 (369)
                      ..++++..||++...-.       ..  ..++|++.+.|++|+++| ++++|+||.+            ....+.+++++
T Consensus       364 ~~~~~v~~~~~~~g~i~-------~~--d~~~~g~~e~l~~L~~~g~i~v~ivTgd~------------~~~a~~i~~~l  422 (556)
T TIGR01525       364 KTVVFVAVDGELLGVIA-------LR--DQLRPEAKEAIAALKRAGGIKLVMLTGDN------------RSAAEAVAAEL  422 (556)
T ss_pred             cEEEEEEECCEEEEEEE-------ec--ccchHhHHHHHHHHHHcCCCeEEEEeCCC------------HHHHHHHHHHh
Confidence            35677888887764421       11  127999999999999999 9999999943            34567788999


Q ss_pred             CCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc
Q psy4598         104 NVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF  180 (369)
Q Consensus       104 ~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f  180 (369)
                      |+.  -+++.-   ..++++.++    +++    ...+++++||||..                .|+.+++++|+-.
T Consensus       423 gi~--~~f~~~---~p~~K~~~v----~~l----~~~~~~v~~vGDg~----------------nD~~al~~A~vgi  470 (556)
T TIGR01525       423 GID--EVHAEL---LPEDKLAIV----KEL----QEEGGVVAMVGDGI----------------NDAPALAAADVGI  470 (556)
T ss_pred             CCC--eeeccC---CHHHHHHHH----HHH----HHcCCEEEEEECCh----------------hHHHHHhhCCEeE
Confidence            973  122110   112223333    332    22457999999999                8999999999654

This alignment encompasses two equivalog models for the copper and cadmium-type heavy metal transporting P-type ATPases (TIGR01511 and TIGR01512) as well as those species which score ambiguously between both models. For more comments and references, see the files on TIGR01511 and 01512.

>KOG1384|consensus

Probab=97.54  E-value=0.00061  Score=65.17  Aligned_cols=94  Identities=15%  Similarity=0.304  Sum_probs=67.2

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch-------------------------------------hHH-HH
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG-------------------------------------SWQ-KC  312 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~-------------------------------------~~~-~~  312 (369)
                      ..++|+++|+.|||||.||-.|+.+++..+|++|.+.                                     .|+ .+
T Consensus         6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~~a   85 (348)
T KOG1384|consen    6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFEDDA   85 (348)
T ss_pred             CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHHHH
Confidence            3479999999999999999999999999999999872                                     122 23


Q ss_pred             HHHHHHHHhCCC-cEEEeCCCCCHHHHHHHHHH----------------HHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         313 VSVMKAALDSGL-SVVVDNTNPDKESRHRYIEA----------------AKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       313 ~~~~~~~l~~g~-~vIiD~tn~~~~~r~~~~~l----------------a~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      .....+..+.|+ ++|+-++|..-   ..+..-                ..+..|.+.++|++++..+..+|
T Consensus        86 ~~aie~I~~rgk~PIv~GGs~~yi---~al~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL~~~  154 (348)
T KOG1384|consen   86 SRAIEEIHSRGKLPIVVGGSNSYL---QALLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVLFER  154 (348)
T ss_pred             HHHHHHHHhCCCCCEEeCCchhhH---HHHhhcCCCcccCcccccCCCCCcccccceEEEEEecchHHHHHH
Confidence            444555566666 67777777532   222211                11224789999999999887665

>TIGR00017 cmk cytidylate kinase

Probab=97.54  E-value=7.5e-05  Score=68.48  Aligned_cols=36  Identities=19%  Similarity=0.470  Sum_probs=33.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      |+.+|.+.|++||||||+++.|++.+++.+++.+.+
T Consensus         1 ~~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~   36 (217)
T TIGR00017         1 MAMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAM   36 (217)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchH
Confidence            457899999999999999999999999999999875

This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.

>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional

Probab=97.51  E-value=0.00024  Score=71.00  Aligned_cols=33  Identities=27%  Similarity=0.402  Sum_probs=30.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      ..|.|+|.+||||||+++.|++ +|+.+|+.|.+
T Consensus         2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i   34 (395)
T PRK03333          2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVL   34 (395)
T ss_pred             eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHH
Confidence            4589999999999999999987 79999999987

>PRK15453 phosphoribulokinase; Provisional

Probab=97.51  E-value=0.00013  Score=68.97  Aligned_cols=41  Identities=20%  Similarity=0.438  Sum_probs=34.3

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchhHHH
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGSWQK  311 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~~~~  311 (369)
                      .+.+|.++|.|||||||+++++++.+     ++.+|+.|.+..|.+
T Consensus         4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr   49 (290)
T PRK15453          4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTR   49 (290)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccCh
Confidence            35789999999999999999998754     478999999876543

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=97.50  E-value=0.0008  Score=67.92  Aligned_cols=37  Identities=24%  Similarity=0.388  Sum_probs=31.1

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG  307 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~  307 (369)
                      .|.+|+|+|++||||||.+..|+..+     .+.+++.|.++
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R  135 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYR  135 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCC
Confidence            36789999999999999999998653     46788899875

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.50  E-value=0.0012  Score=57.82  Aligned_cols=34  Identities=29%  Similarity=0.423  Sum_probs=28.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG  307 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~  307 (369)
                      ++++.|+|||||||++..++..+     .+.+++.|.++
T Consensus         2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~   40 (173)
T cd03115           2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR   40 (173)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence            67899999999999999887653     46788888764

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>KOG2961|consensus

Probab=97.49  E-value=0.0008  Score=57.34  Aligned_cols=120  Identities=16%  Similarity=0.191  Sum_probs=73.5

Q ss_pred             CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHC-C-cEEEEEecCCCcCCCCCCHHHHHHHHHHHHH
Q psy4598          24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDD-G-YKLVIFTNQGAIGRKKMSTRDFQAKAEKIIK  101 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~-G-~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~  101 (369)
                      ..|++.||-|.+|.-+.+       ..=    -|.-...+++++.. | ..|+|+||..|..  ..+...-+  ...+-.
T Consensus        42 ~ikavVlDKDNcit~P~~-------~~I----wp~~l~~ie~~~~vygek~i~v~SNsaG~~--~~D~d~s~--Ak~le~  106 (190)
T KOG2961|consen   42 GIKAVVLDKDNCITAPYS-------LAI----WPPLLPSIERCKAVYGEKDIAVFSNSAGLT--EYDHDDSK--AKALEA  106 (190)
T ss_pred             CceEEEEcCCCeeeCCcc-------ccc----CchhHHHHHHHHHHhCcccEEEEecCcCcc--ccCCchHH--HHHHHH
Confidence            579999999999975543       222    33444555666552 4 6799999976652  22322222  233346


Q ss_pred             HcCCCeEEEEecCCCCCCCCchhHHHHHHHHh-cCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc
Q psy4598         102 SLNVPVQMFVATQYDRYRKPVPGMWEYLSQEK-NGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF  180 (369)
Q Consensus       102 ~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~-~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f  180 (369)
                      +.|||+-        ..++-+|+.-++..+.+ +...-..+++.+||||+.               .+||..|...|--.
T Consensus       107 k~gIpVl--------RHs~kKP~ct~E~~~y~~~Nshv~~~se~~~vGDRl---------------fTDI~~aN~mGs~g  163 (190)
T KOG2961|consen  107 KIGIPVL--------RHSVKKPACTAEEVEYHFGNSHVCTSSELIMVGDRL---------------FTDIVYANRMGSLG  163 (190)
T ss_pred             hhCCceE--------eecccCCCccHHHHHHHhCCcccCChhHeEEEccch---------------hhhHhhhhhcccee
Confidence            7788853        12233344444444432 212235789999999998               39999999888655


Q ss_pred             c
Q psy4598         181 F  181 (369)
Q Consensus       181 ~  181 (369)
                      +
T Consensus       164 V  164 (190)
T KOG2961|consen  164 V  164 (190)
T ss_pred             E
Confidence            3

>PF13173 AAA_14: AAA domain

Probab=97.47  E-value=0.00062  Score=56.81  Aligned_cols=75  Identities=15%  Similarity=0.206  Sum_probs=50.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC----CcEEEeCCcchhHHH----HHHHHHHHHh-CCCcEEEeCCCCCHHHHHHHHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL----NYTTVNRDTLGSWQK----CVSVMKAALD-SGLSVVVDNTNPDKESRHRYIE  343 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~----~~~~i~~D~~~~~~~----~~~~~~~~l~-~g~~vIiD~tn~~~~~r~~~~~  343 (369)
                      +++++.|+.|+||||+++++++.+    ++.+++.|+.+....    +.+...+... ....+++|....-+.....+..
T Consensus         3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~~~~~~~~lk~   82 (128)
T PF13173_consen    3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQYLPDWEDALKF   82 (128)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhhhccHHHHHHH
Confidence            578999999999999999999864    488999988764332    2233333322 3456889987665555555555


Q ss_pred             HHHh
Q psy4598         344 AAKQ  347 (369)
Q Consensus       344 la~~  347 (369)
                      +...
T Consensus        83 l~d~   86 (128)
T PF13173_consen   83 LVDN   86 (128)
T ss_pred             HHHh
Confidence            5543

>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional

Probab=97.46  E-value=0.00037  Score=65.75  Aligned_cols=58  Identities=26%  Similarity=0.391  Sum_probs=44.7

Q ss_pred             ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcC
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLN  104 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~  104 (369)
                      .|++++||||||+.+..            .+.|...++|++|+++|++++|+|-.+        .    ..+..+++.++
T Consensus         2 ~kli~~DlDGTLl~~~~------------~i~~~~~~ai~~l~~~G~~~~iaTGR~--------~----~~~~~~~~~l~   57 (272)
T PRK15126          2 ARLAAFDMDGTLLMPDH------------HLGEKTLSTLARLRERDITLTFATGRH--------V----LEMQHILGALS   57 (272)
T ss_pred             ccEEEEeCCCcCcCCCC------------cCCHHHHHHHHHHHHCCCEEEEECCCC--------H----HHHHHHHHHcC
Confidence            58999999999996431            267889999999999999999999632        1    13445667777


Q ss_pred             CC
Q psy4598         105 VP  106 (369)
Q Consensus       105 i~  106 (369)
                      +.
T Consensus        58 ~~   59 (272)
T PRK15126         58 LD   59 (272)
T ss_pred             CC
Confidence            64

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=97.45  E-value=0.00088  Score=67.25  Aligned_cols=37  Identities=27%  Similarity=0.362  Sum_probs=31.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG  307 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~  307 (369)
                      .|.+|+|+|++||||||.+..|+..+     .+.+++.|.++
T Consensus        99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R  140 (429)
T TIGR01425        99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFR  140 (429)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccc
Confidence            35789999999999999999998643     56789999975

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional

Probab=97.45  E-value=0.00041  Score=65.13  Aligned_cols=42  Identities=33%  Similarity=0.589  Sum_probs=36.5

Q ss_pred             ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEec
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTN   78 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TN   78 (369)
                      .|++++|+||||+....            .+.|...++|++|+++|++++|+|-
T Consensus         3 ~kli~~DlDGTLl~~~~------------~i~~~~~~ai~~~~~~G~~~~iaTG   44 (272)
T PRK10530          3 YRVIALDLDGTLLTPKK------------TILPESLEALARAREAGYKVIIVTG   44 (272)
T ss_pred             ccEEEEeCCCceECCCC------------ccCHHHHHHHHHHHHCCCEEEEEcC
Confidence            58999999999996542            2678899999999999999999996

>PRK14974 cell division protein FtsY; Provisional

Probab=97.45  E-value=0.0013  Score=64.22  Aligned_cols=37  Identities=19%  Similarity=0.373  Sum_probs=29.1

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCCcch
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRDTLG  307 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~-----~~~~~i~~D~~~  307 (369)
                      .|.+|+++|+||+||||.+..++..     ..+.+++.|.+|
T Consensus       139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R  180 (336)
T PRK14974        139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFR  180 (336)
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCc
Confidence            4689999999999999977777654     245678889774

>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated

Probab=97.40  E-value=0.00022  Score=62.89  Aligned_cols=31  Identities=19%  Similarity=0.322  Sum_probs=26.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCC--cEEEeCC
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLN--YTTVNRD  304 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~--~~~i~~D  304 (369)
                      +|++.|+|||||||+|..++..++  +.+|...
T Consensus         3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~   35 (170)
T PRK05800          3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATA   35 (170)
T ss_pred             EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCC
Confidence            689999999999999999998864  5666654

>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair

Probab=97.39  E-value=0.00074  Score=61.87  Aligned_cols=74  Identities=12%  Similarity=0.258  Sum_probs=44.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCC--cEEEeCCcchhHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHh
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLN--YTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQ  347 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~--~~~i~~D~~~~~~~~~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~  347 (369)
                      .-+++.||||+||||+|+.+++.++  +..++...+..-..+... ...++.+..+.||-.+.-....++++--+-+
T Consensus        51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~dl~~i-l~~l~~~~ILFIDEIHRlnk~~qe~LlpamE  126 (233)
T PF05496_consen   51 DHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAGDLAAI-LTNLKEGDILFIDEIHRLNKAQQEILLPAME  126 (233)
T ss_dssp             -EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCHHHHHH-HHT--TT-EEEECTCCC--HHHHHHHHHHHH
T ss_pred             ceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHHHHHHH-HHhcCCCcEEEEechhhccHHHHHHHHHHhc
Confidence            4579999999999999999999875  455666555332233222 2335667777788877654455544444443

Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.

>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily

Probab=97.39  E-value=0.00047  Score=64.38  Aligned_cols=56  Identities=25%  Similarity=0.428  Sum_probs=42.6

Q ss_pred             EEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC
Q psy4598          27 IASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP  106 (369)
Q Consensus        27 ~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~  106 (369)
                      +++|||||||+....            .+-+...++|++|+++|++++|+|+.+            ...+..+++.+++.
T Consensus         1 li~~DlDGTLl~~~~------------~i~~~~~~~i~~l~~~G~~~~iaTGR~------------~~~~~~~~~~~~~~   56 (256)
T TIGR00099         1 LIFIDLDGTLLNDDH------------TISPSTKEALAKLREKGIKVVLATGRP------------YKEVKNILKELGLD   56 (256)
T ss_pred             CEEEeCCCCCCCCCC------------ccCHHHHHHHHHHHHCCCeEEEEeCCC------------HHHHHHHHHHcCCC
Confidence            478999999996421            257889999999999999999999843            12345566777764

The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.

>TIGR01675 plant-AP plant acid phosphatase

Probab=97.39  E-value=0.00065  Score=62.59  Aligned_cols=110  Identities=13%  Similarity=0.165  Sum_probs=68.6

Q ss_pred             CCceEEEEecCCceeecCC--------CCCCCCCccccc--------cccccHHHHHHHHHHCCcEEEEEecCCCcCCCC
Q psy4598          23 NSAKIASFDLDGTLITTKS--------GKVFPVDTHDWK--------LLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKK   86 (369)
Q Consensus        23 ~~~k~~~fDlDgTLi~~~s--------g~~~~~~~~d~~--------~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~   86 (369)
                      ...-+++||+|-|++...+        |..|  +...|.        ...|++.+.++.|+++|++|+++|+-+      
T Consensus        75 dg~~A~V~DIDET~LsN~py~~~~~~g~~~~--~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~------  146 (229)
T TIGR01675        75 DGMDAWIFDVDDTLLSNIPYYKKHGYGTEKT--DPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRW------  146 (229)
T ss_pred             CCCcEEEEccccccccCHHHHHHhccCCCcC--CHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCC------
Confidence            4567899999999987542        1122  122232        147999999999999999999999943      


Q ss_pred             CCHHHHHHHHHHHHHHcCCC-eE-EEEecCCCCCCCC----chhHHHHHHHHhcCCccccCCccEEeeCcc
Q psy4598          87 MSTRDFQAKAEKIIKSLNVP-VQ-MFVATQYDRYRKP----VPGMWEYLSQEKNGDLAIDISQSFYAGDAA  151 (369)
Q Consensus        87 ~~~~~~~~~i~~~l~~l~i~-~~-~~~~~~~~~~rKP----~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~  151 (369)
                         +..+.....-|...|++ ++ ++.-. .+..+|+    +.+....+.++   |..|    ..+|||..
T Consensus       147 ---e~~r~~T~~nL~~~G~~~~~~LiLR~-~~d~~~~~~~yKs~~R~~l~~~---GYrI----v~~iGDq~  206 (229)
T TIGR01675       147 ---EELRNATLDNLINAGFTGWKHLILRG-LEDSNKTVVTYKSEVRKSLMEE---GYRI----WGNIGDQW  206 (229)
T ss_pred             ---hHHHHHHHHHHHHcCCCCcCeeeecC-CCCCCchHhHHHHHHHHHHHhC---CceE----EEEECCCh
Confidence               23445566677888987 44 33322 2223443    23344444432   1123    46799999

This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.

>PHA00729 NTP-binding motif containing protein

Probab=97.38  E-value=0.00095  Score=61.36  Aligned_cols=24  Identities=25%  Similarity=0.544  Sum_probs=21.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      .-|+++|+||+||||+|.+++..+
T Consensus        18 ~nIlItG~pGvGKT~LA~aLa~~l   41 (226)
T PHA00729         18 VSAVIFGKQGSGKTTYALKVARDV   41 (226)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHH
Confidence            468999999999999999999875

>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear

Probab=97.37  E-value=0.00046  Score=59.72  Aligned_cols=106  Identities=21%  Similarity=0.290  Sum_probs=60.0

Q ss_pred             eEEEEecCCceeecCCCCCCC-------CCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHH
Q psy4598          26 KIASFDLDGTLITTKSGKVFP-------VDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEK   98 (369)
Q Consensus        26 k~~~fDlDgTLi~~~sg~~~~-------~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~   98 (369)
                      |+++|||||||+.......-.       ....-...+-|++.+.|++|.+. |.++|+|..+            +.....
T Consensus         1 k~LVlDLD~TLv~~~~~~~~~~~~~~~~~~~~~~v~~RP~l~~FL~~l~~~-~ev~i~T~~~------------~~ya~~   67 (159)
T PF03031_consen    1 KTLVLDLDGTLVHSSSKSPLPYDFKIIDQRGGYYVKLRPGLDEFLEELSKH-YEVVIWTSAS------------EEYAEP   67 (159)
T ss_dssp             EEEEEE-CTTTEEEESSTCTT-SEEEETEEEEEEEEE-TTHHHHHHHHHHH-CEEEEE-SS-------------HHHHHH
T ss_pred             CEEEEeCCCcEEEEeecCCCCcccceeccccceeEeeCchHHHHHHHHHHh-ceEEEEEeeh------------hhhhhH
Confidence            689999999999886432110       00112233579999999999554 9999999821            233444


Q ss_pred             HHHHcC---CCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCcc
Q psy4598          99 IIKSLN---VPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAA  151 (369)
Q Consensus        99 ~l~~l~---i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~  151 (369)
                      +++.+.   ..|...+..+.+..++-.. +  .-++.    ++-+++++++|-|+.
T Consensus        68 v~~~ldp~~~~~~~~~~r~~~~~~~~~~-~--KdL~~----l~~~~~~vvivDD~~  116 (159)
T PF03031_consen   68 VLDALDPNGKLFSRRLYRDDCTFDKGSY-I--KDLSK----LGRDLDNVVIVDDSP  116 (159)
T ss_dssp             HHHHHTTTTSSEEEEEEGGGSEEETTEE-E----GGG----SSS-GGGEEEEES-G
T ss_pred             HHHhhhhhcccccccccccccccccccc-c--cchHH----HhhccccEEEEeCCH
Confidence            444443   4577555555444322211 1  22222    234689999999987

It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....

>TIGR00959 ffh signal recognition particle protein

Probab=97.37  E-value=0.0013  Score=66.18  Aligned_cols=37  Identities=27%  Similarity=0.307  Sum_probs=30.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhcc------CCcEEEeCCcch
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKP------LNYTTVNRDTLG  307 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~------~~~~~i~~D~~~  307 (369)
                      .|.+|+++|+|||||||++..|+..      ..+.+++.|.++
T Consensus        98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R  140 (428)
T TIGR00959        98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYR  140 (428)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence            4679999999999999998877654      247789999875

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]

Probab=97.37  E-value=0.001  Score=63.71  Aligned_cols=36  Identities=19%  Similarity=0.384  Sum_probs=34.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      .+.+|+++||.|||||.+|-.|+++++..+||.|.+
T Consensus         2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSm   37 (308)
T COG0324           2 KPKLIVIAGPTASGKTALAIALAKRLGGEIISLDSM   37 (308)
T ss_pred             CccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchh
Confidence            367999999999999999999999999999999986

>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []

Probab=97.36  E-value=0.0011  Score=61.33  Aligned_cols=83  Identities=18%  Similarity=0.281  Sum_probs=53.9

Q ss_pred             ccccHHHHHHHH--HHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eE-EEEec----------------
Q psy4598          55 LFSNIESVLKQY--LDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQ-MFVAT----------------  113 (369)
Q Consensus        55 ~~p~v~~~L~~L--~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~-~~~~~----------------  113 (369)
                      +.|++.+.|+.+  +..|+.++|+|+-            ..-.|+.+|+..|+.  |. ++.-+                
T Consensus        72 ~~pgm~~~l~~l~~~~~~~~~~IiSDa------------Ns~fI~~iL~~~gl~~~f~~I~TNpa~~~~~G~l~v~pyh~  139 (234)
T PF06888_consen   72 IDPGMKELLRFLAKNQRGFDLIIISDA------------NSFFIETILEHHGLRDCFSEIFTNPACFDADGRLRVRPYHS  139 (234)
T ss_pred             CCccHHHHHHHHHhcCCCceEEEEeCC------------cHhHHHHHHHhCCCccccceEEeCCceecCCceEEEeCccC
Confidence            469999999999  4589999999982            234688999999884  43 32211                


Q ss_pred             CCCCCCCC----chhHHHHHHHHhcCCccccCCccEEeeCcc
Q psy4598         114 QYDRYRKP----VPGMWEYLSQEKNGDLAIDISQSFYAGDAA  151 (369)
Q Consensus       114 ~~~~~rKP----~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~  151 (369)
                      +.|. +-|    +-..++.+++.... -++..++++||||..
T Consensus       140 h~C~-~C~~NmCK~~il~~~~~~~~~-~g~~~~rviYiGDG~  179 (234)
T PF06888_consen  140 HGCS-LCPPNMCKGKILERLLQEQAQ-RGVPYDRVIYIGDGR  179 (234)
T ss_pred             CCCC-cCCCccchHHHHHHHHHHHhh-cCCCcceEEEECCCC
Confidence            1122 112    13456666654210 135678999999998

It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity

>PRK09087 hypothetical protein; Validated

Probab=97.35  E-value=0.00093  Score=61.64  Aligned_cols=33  Identities=21%  Similarity=0.436  Sum_probs=28.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDT  305 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~  305 (369)
                      ..+++.|++||||||+++.+++..++.+++.+.
T Consensus        45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~   77 (226)
T PRK09087         45 PVVVLAGPVGSGKTHLASIWREKSDALLIHPNE   77 (226)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHhcCCEEecHHH
Confidence            457999999999999999999888888887753

>PRK10867 signal recognition particle protein; Provisional

Probab=97.35  E-value=0.0024  Score=64.39  Aligned_cols=37  Identities=27%  Similarity=0.369  Sum_probs=30.1

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhcc------CCcEEEeCCcch
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKP------LNYTTVNRDTLG  307 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~------~~~~~i~~D~~~  307 (369)
                      .|.+|+++|++||||||++..|+..      ..+.+++.|.++
T Consensus        99 ~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R  141 (433)
T PRK10867         99 PPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYR  141 (433)
T ss_pred             CCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccc
Confidence            4689999999999999977777653      246789999875

>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=97.35  E-value=0.00055  Score=64.70  Aligned_cols=59  Identities=15%  Similarity=0.274  Sum_probs=44.5

Q ss_pred             CCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHH
Q psy4598          23 NSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKS  102 (369)
Q Consensus        23 ~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~  102 (369)
                      ...+++++||||||+.+..            ...+...++|++|+++|++++|+|-.+        .    ..+..+++.
T Consensus         5 ~~~~lI~~DlDGTLL~~~~------------~i~~~~~~ai~~l~~~Gi~~viaTGR~--------~----~~i~~~~~~   60 (271)
T PRK03669          5 QDPLLIFTDLDGTLLDSHT------------YDWQPAAPWLTRLREAQVPVILCSSKT--------A----AEMLPLQQT   60 (271)
T ss_pred             CCCeEEEEeCccCCcCCCC------------cCcHHHHHHHHHHHHcCCeEEEEcCCC--------H----HHHHHHHHH
Confidence            3468999999999996431            145778899999999999999999632        1    234556677


Q ss_pred             cCC
Q psy4598         103 LNV  105 (369)
Q Consensus       103 l~i  105 (369)
                      +++
T Consensus        61 l~~   63 (271)
T PRK03669         61 LGL   63 (271)
T ss_pred             hCC
Confidence            776

>KOG3308|consensus

Probab=97.34  E-value=0.00031  Score=62.75  Aligned_cols=34  Identities=15%  Similarity=0.358  Sum_probs=30.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC-CcEEEeCCcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL-NYTTVNRDTL  306 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~-~~~~i~~D~~  306 (369)
                      -+|-+.|.+.|||||||+.|.+.+ ++.+|++|++
T Consensus         5 ~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDF   39 (225)
T KOG3308|consen    5 LIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDF   39 (225)
T ss_pred             EEEEeecccCCCHhHHHHHHHHHccCCeeeccccc
Confidence            366688999999999999999987 7899999997

>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid []

Probab=97.34  E-value=0.00051  Score=62.20  Aligned_cols=89  Identities=10%  Similarity=0.206  Sum_probs=50.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh---------------------------------------HHHH
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS---------------------------------------WQKC  312 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~---------------------------------------~~~~  312 (369)
                      +.++++.||+|+|||.+|-+|++.+++++|+.|.+..                                       .+.+
T Consensus         1 M~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~RiyL~~r~l~~G~i~a~ea~~~L   80 (233)
T PF01745_consen    1 MKVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRIYLDDRPLSDGIINAEEAHERL   80 (233)
T ss_dssp             -EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEEES----GGG-S--HHHHHHHH
T ss_pred             CcEEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHcccceeeeccccccCCCcCHHHHHHHH
Confidence            3689999999999999999999999999999998721                                       1222


Q ss_pred             HHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHH-hcCCeEEEEEEeCCHHH
Q psy4598         313 VSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAK-QHGVRCIAVHMNISKEH  363 (369)
Q Consensus       313 ~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~-~~~~~v~~v~l~~~~e~  363 (369)
                      ...+... ..+..+|+++...+.  ...+.+-.- ..++..++.++.++.+.
T Consensus        81 i~~v~~~-~~~~~~IlEGGSISL--l~~m~~~~~w~~~f~w~i~rl~l~d~~  129 (233)
T PF01745_consen   81 ISEVNSY-SAHGGLILEGGSISL--LNCMAQDPYWSLDFRWHIRRLRLPDEE  129 (233)
T ss_dssp             HHHHHTT-TTSSEEEEEE--HHH--HHHHHH-TTTSSSSEEEEEE-----HH
T ss_pred             HHHHHhc-cccCceEEeCchHHH--HHHHHhcccccCCCeEEEEEEECCChH
Confidence            2222222 336689999876432  222222111 25788889999888754

; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.

>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=97.34  E-value=0.00081  Score=63.94  Aligned_cols=58  Identities=17%  Similarity=0.297  Sum_probs=44.1

Q ss_pred             ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcC
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLN  104 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~  104 (369)
                      .|++++||||||+....            ..++.+.++|++|+++|+.++++|...        .    ..+..+.+.++
T Consensus         1 ~KLIftDLDGTLLd~~~------------~~~~~a~~aL~~Lk~~GI~vVlaTGRt--------~----~ev~~l~~~Lg   56 (302)
T PRK12702          1 MRLVLSSLDGSLLDLEF------------NSYGAARQALAALERRSIPLVLYSLRT--------R----AQLEHLCRQLR   56 (302)
T ss_pred             CcEEEEeCCCCCcCCCC------------cCCHHHHHHHHHHHHCCCEEEEEcCCC--------H----HHHHHHHHHhC
Confidence            37899999999996432            145668999999999999999999742        1    23555667777


Q ss_pred             CC
Q psy4598         105 VP  106 (369)
Q Consensus       105 i~  106 (369)
                      +.
T Consensus        57 l~   58 (302)
T PRK12702         57 LE   58 (302)
T ss_pred             CC
Confidence            73

>PRK10976 putative hydrolase; Provisional

Probab=97.33  E-value=0.00073  Score=63.40  Aligned_cols=42  Identities=29%  Similarity=0.388  Sum_probs=36.1

Q ss_pred             ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEec
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTN   78 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TN   78 (369)
                      .|++++||||||+....            .+-|...++|++|+++|++++|+|-
T Consensus         2 ikli~~DlDGTLl~~~~------------~is~~~~~ai~~l~~~G~~~~iaTG   43 (266)
T PRK10976          2 YQVVASDLDGTLLSPDH------------TLSPYAKETLKLLTARGIHFVFATG   43 (266)
T ss_pred             ceEEEEeCCCCCcCCCC------------cCCHHHHHHHHHHHHCCCEEEEEcC
Confidence            48999999999996532            1577899999999999999999996

>PRK10513 sugar phosphate phosphatase; Provisional

Probab=97.33  E-value=0.00065  Score=63.85  Aligned_cols=42  Identities=21%  Similarity=0.399  Sum_probs=36.1

Q ss_pred             ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEec
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTN   78 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TN   78 (369)
                      .|++++||||||+....            .+-|...++|++|+++|++++|+|-
T Consensus         3 ~kli~~DlDGTLl~~~~------------~i~~~~~~ai~~l~~~G~~~~iaTG   44 (270)
T PRK10513          3 IKLIAIDMDGTLLLPDH------------TISPAVKQAIAAARAKGVNVVLTTG   44 (270)
T ss_pred             eEEEEEecCCcCcCCCC------------ccCHHHHHHHHHHHHCCCEEEEecC
Confidence            58999999999996431            2577889999999999999999996

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=97.32  E-value=0.0015  Score=64.89  Aligned_cols=37  Identities=35%  Similarity=0.459  Sum_probs=32.3

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG  307 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~  307 (369)
                      .|.+|+|+|+.||||||.+..|+..+     ..-.++.|.+|
T Consensus        99 ~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~R  140 (451)
T COG0541          99 PPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYR  140 (451)
T ss_pred             CCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCC
Confidence            46899999999999999999998764     57788999986

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.30  E-value=0.00068  Score=56.12  Aligned_cols=25  Identities=28%  Similarity=0.671  Sum_probs=19.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      ..++++.|+||+|||++++.+.+.+
T Consensus         4 ~~~~~i~G~~G~GKT~~~~~~~~~~   28 (131)
T PF13401_consen    4 QRILVISGPPGSGKTTLIKRLARQL   28 (131)
T ss_dssp             ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred             CcccEEEcCCCCCHHHHHHHHHHHh
Confidence            3578999999999999999998854

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.30  E-value=0.0019  Score=63.75  Aligned_cols=38  Identities=21%  Similarity=0.323  Sum_probs=31.8

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG  307 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~  307 (369)
                      ..+.+|+++||+||||||++..|+..+     .+.+++.|.++
T Consensus       204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR  246 (407)
T PRK12726        204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFR  246 (407)
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccC
Confidence            346899999999999999999998643     46789999985

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=97.30  E-value=0.0014  Score=70.50  Aligned_cols=33  Identities=24%  Similarity=0.448  Sum_probs=31.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      .|.+.|+|||||||+++.|++.+++.+++...+
T Consensus         3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~   35 (712)
T PRK09518          3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAM   35 (712)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEeecCcE
Confidence            689999999999999999999999999998876

>PRK07933 thymidylate kinase; Validated

Probab=97.29  E-value=0.0022  Score=58.65  Aligned_cols=94  Identities=15%  Similarity=0.196  Sum_probs=57.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCC-----cEEEeC-----Ccc----h-------------h-----------HHHHHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLN-----YTTVNR-----DTL----G-------------S-----------WQKCVS  314 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~-----~~~i~~-----D~~----~-------------~-----------~~~~~~  314 (369)
                      ++|.+-|+-||||||+++.|++.+.     +.++..     ..+    +             .           ++. .+
T Consensus         1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P~~~~~~~g~~ir~~l~~~~~~~~~~~~~~~llf~a~R~~~-~~   79 (213)
T PRK07933          1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFPRYGRSVHADLAAEALHGRHGDLADSVYAMATLFALDRAGA-RD   79 (213)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCCCCccHHHHHHHcCCCCcccCCHHHHHHHHhhhhhhh-HH
Confidence            3799999999999999999998752     121210     101    0             0           111 13


Q ss_pred             HHHHHHhCCCcEEEeCCCCCHH-------------HHHHHHHHHHh--cC--CeEEEEEEeCCHHHHHHH
Q psy4598         315 VMKAALDSGLSVVVDNTNPDKE-------------SRHRYIEAAKQ--HG--VRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       315 ~~~~~l~~g~~vIiD~tn~~~~-------------~r~~~~~la~~--~~--~~v~~v~l~~~~e~~~~R  367 (369)
                      .+..+++.|..||.|-...+.-             .-..|+.....  .+  .|=.+|++++|++++.+|
T Consensus        80 ~I~p~l~~g~~VI~DRy~~S~~Ayq~~~~~~~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ldv~~e~a~~R  149 (213)
T PRK07933         80 ELAGLLAAHDVVILDRYVASNAAYSAARLHQDADGEAVAWVAELEFGRLGLPVPDLQVLLDVPVELAAER  149 (213)
T ss_pred             HHHHHHhCCCEEEECCccchhHHHhccCCCcccchHHHHHHHHHHHhhcCCCCCCEEEEecCCHHHHHHH
Confidence            3455667898889886544321             11122222221  12  466899999999999888

>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]

Probab=97.29  E-value=0.00078  Score=63.20  Aligned_cols=59  Identities=25%  Similarity=0.464  Sum_probs=47.2

Q ss_pred             CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHc
Q psy4598          24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSL  103 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l  103 (369)
                      +.|+++||+||||.....           . ..|.+.++|++++++|++++|+|-.+           + ..+..+++.+
T Consensus         2 ~~kli~~DlDGTLl~~~~-----------~-i~~~~~~al~~~~~~g~~v~iaTGR~-----------~-~~~~~~~~~l   57 (264)
T COG0561           2 MIKLLAFDLDGTLLDSNK-----------T-ISPETKEALARLREKGVKVVLATGRP-----------L-PDVLSILEEL   57 (264)
T ss_pred             CeeEEEEcCCCCccCCCC-----------c-cCHHHHHHHHHHHHCCCEEEEECCCC-----------h-HHHHHHHHHc
Confidence            468999999999997653           1 68889999999999999999999732           1 3456677888


Q ss_pred             CCC
Q psy4598         104 NVP  106 (369)
Q Consensus       104 ~i~  106 (369)
                      ++.
T Consensus        58 ~~~   60 (264)
T COG0561          58 GLD   60 (264)
T ss_pred             CCC
Confidence            875

>KOG0744|consensus

Probab=97.29  E-value=0.00054  Score=65.47  Aligned_cols=28  Identities=21%  Similarity=0.534  Sum_probs=25.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcE
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYT  299 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~  299 (369)
                      -++|++.||||+|||+++++|++.+...
T Consensus       177 NRliLlhGPPGTGKTSLCKaLaQkLSIR  204 (423)
T KOG0744|consen  177 NRLILLHGPPGTGKTSLCKALAQKLSIR  204 (423)
T ss_pred             eeEEEEeCCCCCChhHHHHHHHHhheee
Confidence            4799999999999999999999987544

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.29  E-value=0.0021  Score=62.39  Aligned_cols=37  Identities=19%  Similarity=0.336  Sum_probs=30.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG  307 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~  307 (369)
                      .+.+|+++||+||||||++..|+..+     .+.+++.|.++
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r  154 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR  154 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence            35789999999999999999998753     46778888764

>PRK13976 thymidylate kinase; Provisional

Probab=97.28  E-value=0.0011  Score=60.55  Aligned_cols=96  Identities=19%  Similarity=0.174  Sum_probs=59.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC----C--cEEEeCC---c-c----h---------------------hHHHHHHHHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL----N--YTTVNRD---T-L----G---------------------SWQKCVSVMK  317 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~----~--~~~i~~D---~-~----~---------------------~~~~~~~~~~  317 (369)
                      .+|++-|..||||||.++.|++.+    +  -+++...   . +    +                     .++.......
T Consensus         1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~~g~~~v~~~~eP~~~~~g~~ir~~l~~~~~~~~~~~~llf~a~R~~~~~~~I~   80 (209)
T PRK13976          1 MFITFEGIDGSGKTTQSRLLAEYLSDIYGENNVVLTREPGGTSFNELVRGLLLSLKNLDKISELLLFIAMRREHFVKVIL   80 (209)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhcCCcceEEeeCCCCCHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            378999999999999999998764    2  1222211   0 1    0                     0112233456


Q ss_pred             HHHhCCCcEEEeCCCCCHHHH---------HHHHHHHH--hcCCeEEEEEEeCCHHHHHHHc
Q psy4598         318 AALDSGLSVVVDNTNPDKESR---------HRYIEAAK--QHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       318 ~~l~~g~~vIiD~tn~~~~~r---------~~~~~la~--~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      .+++.|..||.|-...+....         +.+..+.+  ....|=..+++++|++++.+|-
T Consensus        81 p~l~~G~~VI~DRy~~S~~Ayq~~~~g~~~~~i~~l~~~~~~~~PDl~i~Ldv~~e~a~~Ri  142 (209)
T PRK13976         81 PALLQGKIVICDRFIDSTIAYQGYGCGVDLSLIRDLNDLVVDKYPDITFVLDIDIELSLSRA  142 (209)
T ss_pred             HHHHCCCEEEECCCcCHHHHhccccCCCCHHHHHHHHHHhhCCCCCEEEEEeCCHHHHHHHh
Confidence            677899999988765432111         11222221  1224778999999999999883

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=97.28  E-value=0.0023  Score=60.77  Aligned_cols=37  Identities=22%  Similarity=0.414  Sum_probs=30.2

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG  307 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~  307 (369)
                      .+.+|+++|++|+||||.+..|+..+     ...+++.|.++
T Consensus        71 ~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r  112 (272)
T TIGR00064        71 KPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFR  112 (272)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCC
Confidence            45789999999999999999987643     46778999764

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []

Probab=97.27  E-value=0.00068  Score=61.94  Aligned_cols=55  Identities=31%  Similarity=0.481  Sum_probs=42.8

Q ss_pred             EEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC
Q psy4598          28 ASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP  106 (369)
Q Consensus        28 ~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~  106 (369)
                      +++|+||||+.+..           . +.|...++|++|+++|++++|+|-.+            ...+..++..+++.
T Consensus         1 i~~DlDGTLl~~~~-----------~-i~~~~~~al~~l~~~g~~~~i~TGR~------------~~~~~~~~~~~~~~   55 (254)
T PF08282_consen    1 IFSDLDGTLLNSDG-----------K-ISPETIEALKELQEKGIKLVIATGRS------------YSSIKRLLKELGID   55 (254)
T ss_dssp             EEEECCTTTCSTTS-----------S-SCHHHHHHHHHHHHTTCEEEEECSST------------HHHHHHHHHHTTHC
T ss_pred             cEEEECCceecCCC-----------e-eCHHHHHHHHhhcccceEEEEEccCc------------ccccccccccccch
Confidence            58999999986432           2 57899999999999999999999732            22356667777764

This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....

>PRK04296 thymidine kinase; Provisional

Probab=97.27  E-value=0.0025  Score=57.08  Aligned_cols=86  Identities=19%  Similarity=0.217  Sum_probs=55.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeC--Ccc---h----------------hHHHHHHHHHHHHhCC-C
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNR--DTL---G----------------SWQKCVSVMKAALDSG-L  324 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~--D~~---~----------------~~~~~~~~~~~~l~~g-~  324 (369)
                      -.+++++|+|||||||++..++.+.     .+.++..  |.-   .                ..+.+...+.+ .+.. .
T Consensus         2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~~d   80 (190)
T PRK04296          2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEKID   80 (190)
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCCCC
Confidence            3688999999999999999887653     3444533  321   0                01222233333 1112 2


Q ss_pred             cEEEeCCC-CCHHHHHHHHHHHHhcCCeEEEEEEe
Q psy4598         325 SVVVDNTN-PDKESRHRYIEAAKQHGVRCIAVHMN  358 (369)
Q Consensus       325 ~vIiD~tn-~~~~~r~~~~~la~~~~~~v~~v~l~  358 (369)
                      .||||-.. ...++...+++.++..++.+.+.-++
T Consensus        81 vviIDEaq~l~~~~v~~l~~~l~~~g~~vi~tgl~  115 (190)
T PRK04296         81 CVLIDEAQFLDKEQVVQLAEVLDDLGIPVICYGLD  115 (190)
T ss_pred             EEEEEccccCCHHHHHHHHHHHHHcCCeEEEEecC
Confidence            57888654 44555677888888899999888887

>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein

Probab=97.26  E-value=0.00095  Score=60.82  Aligned_cols=55  Identities=25%  Similarity=0.370  Sum_probs=41.0

Q ss_pred             EEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC
Q psy4598          28 ASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP  106 (369)
Q Consensus        28 ~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~  106 (369)
                      +++||||||+....           . ..+...++|++|+++|++++++|+.+            ...+..+++.+++.
T Consensus         2 i~~DlDGTLL~~~~-----------~-~~~~~~~~l~~l~~~gi~~~i~TgR~------------~~~~~~~~~~l~~~   56 (221)
T TIGR02463         2 VFSDLDGTLLDSHS-----------Y-DWQPAAPWLTRLQEAGIPVILCTSKT------------AAEVEYLQKALGLT   56 (221)
T ss_pred             EEEeCCCCCcCCCC-----------C-CcHHHHHHHHHHHHCCCeEEEEcCCC------------HHHHHHHHHHcCCC
Confidence            68999999996432           1 24448899999999999999999943            12355666777764

This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=97.26  E-value=0.00025  Score=66.71  Aligned_cols=38  Identities=18%  Similarity=0.448  Sum_probs=31.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchhHHH
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGSWQK  311 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~~~~  311 (369)
                      +|.++|.+||||||+++++.+.+     .+.+|+.|.+..|.+
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr~~r   43 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHRYER   43 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEeccccccCCc
Confidence            47899999999999999998754     478999999876544

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]

Probab=97.26  E-value=0.0016  Score=59.21  Aligned_cols=98  Identities=21%  Similarity=0.218  Sum_probs=62.2

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC---Cc-EEEeC---Cc----------------ch-----------hHHHHHHHH
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL---NY-TTVNR---DT----------------LG-----------SWQKCVSVM  316 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~---~~-~~i~~---D~----------------~~-----------~~~~~~~~~  316 (369)
                      +..+|.+=|.-||||||.++.|.+.+   +. +++..   +.                +.           .++.+.+..
T Consensus         2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~ll~~~~~~~~~~e~lLfaadR~~h~~~~i   81 (208)
T COG0125           2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLLNGEEKLSPKAEALLFAADRAQHLEEVI   81 (208)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            35799999999999999999998864   21 11111   10                00           123345566


Q ss_pred             HHHHhCCCcEEEeCCCCCHHH------------HHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         317 KAALDSGLSVVVDNTNPDKES------------RHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       317 ~~~l~~g~~vIiD~tn~~~~~------------r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      ..++..|..||.|-...+.-.            ...+.+.+...-.|-..+++++|.+++++|-
T Consensus        82 ~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~  145 (208)
T COG0125          82 KPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERI  145 (208)
T ss_pred             HHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHH
Confidence            777888989998865433221            1222222222115678999999999999984

>KOG3877|consensus

Probab=97.23  E-value=0.0027  Score=59.47  Aligned_cols=97  Identities=19%  Similarity=0.339  Sum_probs=66.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEe---CCcc---------h--------------------------------
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVN---RDTL---------G--------------------------------  307 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~---~D~~---------~--------------------------------  307 (369)
                      .++|++-|+-|||||+||++|++.++.++..   .|.+         +                                
T Consensus        71 SkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsyg~D~r~l~~~~p~~cr~~di~~Fy~dPS~dlsa~~Q~  150 (393)
T KOG3877|consen   71 SKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSYGNDLRNLYNKFPARCRLPDISMFYKDPSGDLSAAMQD  150 (393)
T ss_pred             ceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeecccCccchhccccCCcccCchhHHHhccCCCccHHHHHHH
Confidence            4789999999999999999999998765553   4443         0                                


Q ss_pred             -----hHHHHHHHHHHHHhCCCcEEEeCCCC---------------CHHHHHHHHHHHHh----cCCeEEEEEEeCCHHH
Q psy4598         308 -----SWQKCVSVMKAALDSGLSVVVDNTNP---------------DKESRHRYIEAAKQ----HGVRCIAVHMNISKEH  363 (369)
Q Consensus       308 -----~~~~~~~~~~~~l~~g~~vIiD~tn~---------------~~~~r~~~~~la~~----~~~~v~~v~l~~~~e~  363 (369)
                           .+.+....+...|..|+.||++-+-.               .++.+..+-++-+.    .=-+-.+||+++|...
T Consensus       151 r~y~~R~~QY~dAL~HiL~TGQGVVLERsp~SDFVF~eAM~~qgyi~~~~~~hYnevr~nti~~ll~PHLViYld~Pv~~  230 (393)
T KOG3877|consen  151 RIYNCRFDQYLDALAHILNTGQGVVLERSPHSDFVFAEAMRDQGYIGHEYFKHYNEVRKNTIPQLLWPHLVIYLDTPVNK  230 (393)
T ss_pred             HHHHhHHHHHHHHHHHHHhcCCeEEEecCcchhHHHHHHHHhcCcchhHHHHHHHHHHhhhhhhhcCccEEEEEcCCcHH
Confidence                 12334566677788999999986532               34444444333221    2235679999999987


Q ss_pred             HHHHc
Q psy4598         364 AKHNI  368 (369)
Q Consensus       364 ~~~Rn  368 (369)
                      +++|-
T Consensus       231 v~~~I  235 (393)
T KOG3877|consen  231 VLENI  235 (393)
T ss_pred             HHHHH
Confidence            77663

>PTZ00174 phosphomannomutase; Provisional

Probab=97.23  E-value=0.00047  Score=64.31  Aligned_cols=43  Identities=23%  Similarity=0.462  Sum_probs=37.3

Q ss_pred             CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEec
Q psy4598          24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTN   78 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TN   78 (369)
                      ..|++++||||||..+..            .+.|...++|++|+++|++++|+|-
T Consensus         4 ~~klia~DlDGTLL~~~~------------~is~~~~~ai~~l~~~Gi~~viaTG   46 (247)
T PTZ00174          4 KKTILLFDVDGTLTKPRN------------PITQEMKDTLAKLKSKGFKIGVVGG   46 (247)
T ss_pred             CCeEEEEECcCCCcCCCC------------CCCHHHHHHHHHHHHCCCEEEEEcC
Confidence            469999999999996642            2578889999999999999999996

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=97.22  E-value=0.00071  Score=62.10  Aligned_cols=23  Identities=22%  Similarity=0.439  Sum_probs=20.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~  294 (369)
                      |..++++|+||+||||+|+.+..
T Consensus        12 ~~~~liyG~~G~GKtt~a~~~~~   34 (220)
T TIGR01618        12 PNMYLIYGKPGTGKTSTIKYLPG   34 (220)
T ss_pred             CcEEEEECCCCCCHHHHHHhcCC
Confidence            56799999999999999999964

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

>PRK06620 hypothetical protein; Validated

Probab=97.21  E-value=0.0016  Score=59.58  Aligned_cols=30  Identities=20%  Similarity=0.301  Sum_probs=25.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEe
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVN  302 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~  302 (369)
                      ..+++.|+|||||||+++.+++..+..+++
T Consensus        45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~   74 (214)
T PRK06620         45 FTLLIKGPSSSGKTYLTKIWQNLSNAYIIK   74 (214)
T ss_pred             ceEEEECCCCCCHHHHHHHHHhccCCEEcc
Confidence            457999999999999999998887655544

>TIGR01680 Veg_Stor_Prot vegetative storage protein

Probab=97.20  E-value=0.0035  Score=58.99  Aligned_cols=74  Identities=16%  Similarity=0.282  Sum_probs=50.7

Q ss_pred             CCceEEEEecCCceeecCC--------CCCCCCCccccc---------cccccHHHHHHHHHHCCcEEEEEecCCCcCCC
Q psy4598          23 NSAKIASFDLDGTLITTKS--------GKVFPVDTHDWK---------LLFSNIESVLKQYLDDGYKLVIFTNQGAIGRK   85 (369)
Q Consensus        23 ~~~k~~~fDlDgTLi~~~s--------g~~~~~~~~d~~---------~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~   85 (369)
                      ...-+++||+|+|++...+        +..|.  ...|.         ...|++.+.++.|++.|++|+++||.+     
T Consensus        99 ~~~dA~V~DIDET~LsN~pY~~~~~~g~e~~~--~~~w~~~Wv~~~~ApAlp~al~ly~~l~~~G~kIf~VSgR~-----  171 (275)
T TIGR01680        99 HEKDTFLFNIDGTALSNIPYYKKHGYGSEKFD--SELYDEEFVNKGEAPALPETLKNYNKLVSLGFKIIFLSGRL-----  171 (275)
T ss_pred             CCCCEEEEECccccccCHHHHHHhcCCCCcCC--hhhhhHHHHhcccCCCChHHHHHHHHHHHCCCEEEEEeCCc-----
Confidence            3457899999999984321        12222  22232         247899999999999999999999943     


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCe
Q psy4598          86 KMSTRDFQAKAEKIIKSLNVPV  107 (369)
Q Consensus        86 ~~~~~~~~~~i~~~l~~l~i~~  107 (369)
                          +..+....+-|.+.|++.
T Consensus       172 ----e~~r~aT~~NL~kaGy~~  189 (275)
T TIGR01680       172 ----KDKQAVTEANLKKAGYHT  189 (275)
T ss_pred             ----hhHHHHHHHHHHHcCCCC
Confidence                223444555577789863

The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.

>PTZ00451 dephospho-CoA kinase; Provisional

Probab=97.20  E-value=0.00077  Score=62.88  Aligned_cols=35  Identities=14%  Similarity=0.208  Sum_probs=32.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG  307 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~  307 (369)
                      .+|-++|..||||||+++.|.+.+|+.+|+.|.+.
T Consensus         2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~ia   36 (244)
T PTZ00451          2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLVV   36 (244)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHHH
Confidence            47899999999999999999998999999999984

>KOG3220|consensus

Probab=97.19  E-value=0.0014  Score=58.68  Aligned_cols=33  Identities=18%  Similarity=0.392  Sum_probs=30.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      .+|=++|-.||||||+++.+. .+++.+|++|.+
T Consensus         2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~v   34 (225)
T KOG3220|consen    2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVV   34 (225)
T ss_pred             eEEEeecccccChHHHHHHHH-HcCCcEecHHHH
Confidence            467789999999999999998 889999999987

>TIGR01512 ATPase-IB2_Cd heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase

Probab=97.18  E-value=0.00073  Score=70.24  Aligned_cols=84  Identities=14%  Similarity=0.154  Sum_probs=60.6

Q ss_pred             ccccHHHHHHHHHHCCc-EEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCchhHHHHHHHHh
Q psy4598          55 LFSNIESVLKQYLDDGY-KLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEK  133 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~-~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~  133 (369)
                      ++|++.+.|++|+++|+ +++|+||.+            ....+.+++++|+.- ++...    ...++..+++.+.   
T Consensus       363 l~~~~~e~i~~L~~~Gi~~v~vvTgd~------------~~~a~~i~~~lgi~~-~f~~~----~p~~K~~~i~~l~---  422 (536)
T TIGR01512       363 PRPDAAEAIAELKALGIEKVVMLTGDR------------RAVAERVARELGIDE-VHAEL----LPEDKLEIVKELR---  422 (536)
T ss_pred             chHHHHHHHHHHHHcCCCcEEEEcCCC------------HHHHHHHHHHcCChh-hhhcc----CcHHHHHHHHHHH---
Confidence            79999999999999999 999999943            345677788888731 11110    1122333444332   


Q ss_pred             cCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCC
Q psy4598         134 NGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLA  179 (369)
Q Consensus       134 ~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~  179 (369)
                           -..++++||||..                .|+.+++++|+.
T Consensus       423 -----~~~~~v~~vGDg~----------------nD~~al~~A~vg  447 (536)
T TIGR01512       423 -----EKYGPVAMVGDGI----------------NDAPALAAADVG  447 (536)
T ss_pred             -----hcCCEEEEEeCCH----------------HHHHHHHhCCEE
Confidence                 3357999999999                899999999973

.

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.16  E-value=0.003  Score=52.13  Aligned_cols=77  Identities=13%  Similarity=0.204  Sum_probs=44.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchh---HHHHHH-------HHHHHHhCCCcEEEeCCCCC-H
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGS---WQKCVS-------VMKAALDSGLSVVVDNTNPD-K  335 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~---~~~~~~-------~~~~~l~~g~~vIiD~tn~~-~  335 (369)
                      ...+++.|+||+|||++++.++..+     .+..++......   ......       ...........+|+|..+.- .
T Consensus        19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~   98 (151)
T cd00009          19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSR   98 (151)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhH
Confidence            4578999999999999999999865     344444443321   111111       11122234457889987642 3


Q ss_pred             HHHHHHHHHHHhc
Q psy4598         336 ESRHRYIEAAKQH  348 (369)
Q Consensus       336 ~~r~~~~~la~~~  348 (369)
                      .....+.......
T Consensus        99 ~~~~~~~~~i~~~  111 (151)
T cd00009          99 GAQNALLRVLETL  111 (151)
T ss_pred             HHHHHHHHHHHhc
Confidence            3444555544443

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]

Probab=97.16  E-value=0.00087  Score=65.80  Aligned_cols=58  Identities=14%  Similarity=0.218  Sum_probs=39.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc----hhHHHHHHHHHHHHhCCC--cEEEeCCC
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL----GSWQKCVSVMKAALDSGL--SVVVDNTN  332 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~~~~~i~~D~~----~~~~~~~~~~~~~l~~g~--~vIiD~tn  332 (369)
                      .||-||||+||||+|+.++...++.+..-...    ...+...+.++.....|+  .++||-..
T Consensus        51 mIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIH  114 (436)
T COG2256          51 MILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEARKNRLLGRRTILFLDEIH  114 (436)
T ss_pred             eEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHHHHHHhcCCceEEEEehhh
Confidence            58999999999999999999886555443332    345566666665555444  33466554

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=97.14  E-value=0.0051  Score=53.39  Aligned_cols=25  Identities=20%  Similarity=0.425  Sum_probs=21.7

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      ++.=|+++|+||+||||++..++..
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~   28 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEK   28 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHH
Confidence            4566899999999999999999864

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.14  E-value=0.0022  Score=63.85  Aligned_cols=37  Identities=22%  Similarity=0.405  Sum_probs=31.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC---------CcEEEeCCcch
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL---------NYTTVNRDTLG  307 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~---------~~~~i~~D~~~  307 (369)
                      .|.+|+++|++|+||||.+..|+..+         .+.+++.|.++
T Consensus       173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R  218 (388)
T PRK12723        173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYR  218 (388)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCcc
Confidence            46799999999999999999998642         46788999975

>PRK06893 DNA replication initiation factor; Validated

Probab=97.13  E-value=0.0021  Score=59.33  Aligned_cols=32  Identities=16%  Similarity=0.238  Sum_probs=26.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRD  304 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D  304 (369)
                      ..++|.|+||+|||+++++++...     ++.+++..
T Consensus        40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~   76 (229)
T PRK06893         40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS   76 (229)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence            468999999999999999998653     56666664

>TIGR00685 T6PP trehalose-phosphatase

Probab=97.13  E-value=0.0023  Score=59.60  Aligned_cols=50  Identities=18%  Similarity=0.223  Sum_probs=36.4

Q ss_pred             CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHC-CcEEEEEecCC
Q psy4598          24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDD-GYKLVIFTNQG   80 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~-G~~i~i~TNq~   80 (369)
                      +.+.++||+||||....      ..+..-. ..|++.+.|++|.+. +..++|+|-.+
T Consensus         2 ~~~~l~lD~DGTL~~~~------~~p~~~~-~~~~~~~~L~~L~~~~~~~v~ivSGR~   52 (244)
T TIGR00685         2 RKRAFFFDYDGTLSEIV------PDPDAAV-VSDRLLTILQKLAARPHNAIWIISGRK   52 (244)
T ss_pred             CcEEEEEecCccccCCc------CCCcccC-CCHHHHHHHHHHHhCCCCeEEEEECCC
Confidence            45788999999998532      2233223 588999999999876 56778999653

At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.

>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]

Probab=97.12  E-value=0.0017  Score=56.55  Aligned_cols=35  Identities=31%  Similarity=0.489  Sum_probs=29.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-CcEEEeCCcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-NYTTVNRDTL  306 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-~~~~i~~D~~  306 (369)
                      +++++++|.||+||||+.+...+.+ ...++|.-++
T Consensus         4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~   39 (189)
T COG2019           4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDL   39 (189)
T ss_pred             ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHH
Confidence            4789999999999999999999887 6666665554

>PRK00023 cmk cytidylate kinase; Provisional

Probab=97.12  E-value=0.00034  Score=64.50  Aligned_cols=35  Identities=23%  Similarity=0.430  Sum_probs=32.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      +.+|.+.|+|||||||+++.+++.+++.+++.+.+
T Consensus         4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~   38 (225)
T PRK00023          4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAM   38 (225)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchh
Confidence            36899999999999999999999999999999885

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.11  E-value=0.0046  Score=61.38  Aligned_cols=36  Identities=17%  Similarity=0.279  Sum_probs=30.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG  307 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~  307 (369)
                      +..|+|+|++||||||++..|+..+     .+.+++.|.++
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R  281 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR  281 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence            5789999999999999999998643     46788999875

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.10  E-value=0.0018  Score=64.82  Aligned_cols=36  Identities=19%  Similarity=0.390  Sum_probs=30.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC------CcEEEeCCcch
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL------NYTTVNRDTLG  307 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~------~~~~i~~D~~~  307 (369)
                      +.+|+++|++||||||++..|+..+      .+.+++.|.++
T Consensus       223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R  264 (432)
T PRK12724        223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYR  264 (432)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchh
Confidence            5789999999999999999998643      36678899875

>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional

Probab=97.08  E-value=0.0014  Score=63.01  Aligned_cols=33  Identities=21%  Similarity=0.454  Sum_probs=30.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      ++|+++||.|||||.+|-.|++. +..+||.|.+
T Consensus         5 ~ii~I~GpTasGKS~LAl~LA~~-~~eIIsaDS~   37 (300)
T PRK14729          5 KIVFIFGPTAVGKSNILFHFPKG-KAEIINVDSI   37 (300)
T ss_pred             cEEEEECCCccCHHHHHHHHHHh-CCcEEeccHH
Confidence            58999999999999999999999 5699999997

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.08  E-value=0.00047  Score=56.38  Aligned_cols=33  Identities=21%  Similarity=0.551  Sum_probs=26.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCC-----cEEEeCCc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLN-----YTTVNRDT  305 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~-----~~~i~~D~  305 (369)
                      ..++++|+|||||||+++.++..+.     ..+++.+.
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~   40 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGED   40 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEE
Confidence            4689999999999999999998752     45555554

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25)

Probab=97.08  E-value=0.0001  Score=68.08  Aligned_cols=110  Identities=16%  Similarity=0.278  Sum_probs=65.4

Q ss_pred             CCceEEEEecCCceeecCCCCCC---------CCCccccc--------cccccHHHHHHHHHHCCcEEEEEecCCCcCCC
Q psy4598          23 NSAKIASFDLDGTLITTKSGKVF---------PVDTHDWK--------LLFSNIESVLKQYLDDGYKLVIFTNQGAIGRK   85 (369)
Q Consensus        23 ~~~k~~~fDlDgTLi~~~sg~~~---------~~~~~d~~--------~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~   85 (369)
                      ....+++||+|+|++...   .|         .-++.+|.        ...|++.+.++.++++|++|+++||-+.    
T Consensus        70 ~~~~avv~DIDeTvLsn~---~y~~~~~~~~~~~~~~~w~~wv~~~~~~aip~a~~l~~~~~~~G~~V~~iT~R~~----  142 (229)
T PF03767_consen   70 DKPPAVVFDIDETVLSNS---PYYAYLIFGGESFSPEDWDEWVASGKAPAIPGALELYNYARSRGVKVFFITGRPE----  142 (229)
T ss_dssp             TSEEEEEEESBTTTEEHH---HHHHHHHHHTHHH-CCHHHHHHHCTGGEEETTHHHHHHHHHHTTEEEEEEEEEET----
T ss_pred             CCCcEEEEECCcccccCH---HHHHHHhhccCCCChHHHHHHHhcccCcccHHHHHHHHHHHHCCCeEEEEecCCc----
Confidence            456789999999988542   22         01223342        3579999999999999999999999432    


Q ss_pred             CCCHHHHHHHHHHHHHHcCCCe-E-EEEecCCCCCCCC----chhHHHHHHHHhcCCccccCCccEEeeCcc
Q psy4598          86 KMSTRDFQAKAEKIIKSLNVPV-Q-MFVATQYDRYRKP----VPGMWEYLSQEKNGDLAIDISQSFYAGDAA  151 (369)
Q Consensus        86 ~~~~~~~~~~i~~~l~~l~i~~-~-~~~~~~~~~~rKP----~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~  151 (369)
                           ..+.....-|.+.|++. + +++.+..+...+.    +..-...+.++   |..|    ..+|||..
T Consensus       143 -----~~r~~T~~nL~~~G~~~~~~l~lr~~~~~~~~~~~~yK~~~r~~i~~~---Gy~I----i~~iGD~~  202 (229)
T PF03767_consen  143 -----SQREATEKNLKKAGFPGWDHLILRPDKDPSKKSAVEYKSERRKEIEKK---GYRI----IANIGDQL  202 (229)
T ss_dssp             -----TCHHHHHHHHHHHTTSTBSCGEEEEESSTSS------SHHHHHHHHHT---TEEE----EEEEESSG
T ss_pred             -----hhHHHHHHHHHHcCCCccchhccccccccccccccccchHHHHHHHHc---CCcE----EEEeCCCH
Confidence                 13334445577778753 3 3333322211100    22333334333   1133    67899999

The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=97.08  E-value=0.0019  Score=60.68  Aligned_cols=24  Identities=25%  Similarity=0.326  Sum_probs=21.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      ..-+++.||||+||||+|+.+++.
T Consensus        42 ~~~vll~GppGtGKTtlA~~ia~~   65 (261)
T TIGR02881        42 VLHMIFKGNPGTGKTTVARILGKL   65 (261)
T ss_pred             cceEEEEcCCCCCHHHHHHHHHHH
Confidence            345789999999999999999875

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>smart00763 AAA_PrkA PrkA AAA domain

Probab=97.06  E-value=0.00033  Score=68.51  Aligned_cols=28  Identities=32%  Similarity=0.540  Sum_probs=24.5

Q ss_pred             ccccEEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         269 AALDSVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       269 ~~~~~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      ....++++|+|||||||||+|++|++.+
T Consensus        75 ~~~r~il~L~GPPGsGKStla~~La~~l  102 (361)
T smart00763       75 EERKQILYLLGPVGGGKSSLVECLKRGL  102 (361)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3446899999999999999999999875

This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.

>KOG1532|consensus

Probab=97.03  E-value=0.0012  Score=61.80  Aligned_cols=39  Identities=23%  Similarity=0.372  Sum_probs=31.8

Q ss_pred             ccccccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCc
Q psy4598         267 MKAALDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDT  305 (369)
Q Consensus       267 ~~~~~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~  305 (369)
                      ..+..|.+|+++|..|||||||.++|..++     +..+||.|.
T Consensus        14 ~~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDP   57 (366)
T KOG1532|consen   14 GAIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDP   57 (366)
T ss_pred             ccccCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCH
Confidence            345567899999999999999999997653     467788775

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=97.02  E-value=0.0085  Score=51.11  Aligned_cols=78  Identities=22%  Similarity=0.231  Sum_probs=55.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC----CcEEEeCCc-------ch-hHHHHHHHHHHHHhCCCcEEEeCC--CCCHHHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL----NYTTVNRDT-------LG-SWQKCVSVMKAALDSGLSVVVDNT--NPDKESR  338 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~----~~~~i~~D~-------~~-~~~~~~~~~~~~l~~g~~vIiD~t--n~~~~~r  338 (369)
                      .++.+.|++||||||+.+.++...    |-+.++...       +. ..++....++..+..-..+|+|-+  +++...+
T Consensus        27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~  106 (144)
T cd03221          27 DRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESI  106 (144)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence            578999999999999999998764    323332211       11 123445567777777778899965  5688889


Q ss_pred             HHHHHHHHhcCC
Q psy4598         339 HRYIEAAKQHGV  350 (369)
Q Consensus       339 ~~~~~la~~~~~  350 (369)
                      ..+.++.++.+.
T Consensus       107 ~~l~~~l~~~~~  118 (144)
T cd03221         107 EALEEALKEYPG  118 (144)
T ss_pred             HHHHHHHHHcCC
Confidence            999888887753

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]

Probab=97.02  E-value=0.00058  Score=61.84  Aligned_cols=34  Identities=21%  Similarity=0.440  Sum_probs=31.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      ..|-+-||+||||||+|+.+++.+++.+|++-.+
T Consensus         5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGam   38 (222)
T COG0283           5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAM   38 (222)
T ss_pred             eEEEEeCCCccChHHHHHHHHHHhCCCeecccHH
Confidence            5788999999999999999999999999998775

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=97.01  E-value=0.0013  Score=61.14  Aligned_cols=29  Identities=38%  Similarity=0.535  Sum_probs=21.5

Q ss_pred             EEcCCCCcHHHHHHHHhccC-----CcEEEeCCc
Q psy4598         277 MIGSQGSGKSSFVSTYLKPL-----NYTTVNRDT  305 (369)
Q Consensus       277 l~G~pGSGKSTla~~L~~~~-----~~~~i~~D~  305 (369)
                      ++|||||||||+++.+.+.+     +..+||.|-
T Consensus         1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDP   34 (238)
T PF03029_consen    1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDP   34 (238)
T ss_dssp             -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--T
T ss_pred             CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcch
Confidence            57999999999999998863     566777765

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=97.00  E-value=0.00052  Score=70.70  Aligned_cols=8  Identities=13%  Similarity=0.015  Sum_probs=4.2

Q ss_pred             HHHHHHHh
Q psy4598         126 WEYLSQEK  133 (369)
Q Consensus       126 ~~~~~~~~  133 (369)
                      .+.+++++
T Consensus       239 i~~iL~~l  246 (526)
T TIGR01663       239 IEAIVAKL  246 (526)
T ss_pred             HHHHHHHc
Confidence            45555554

Note that the EC number for the kinase function is: 2.7.1.78

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.99  E-value=0.0054  Score=60.68  Aligned_cols=63  Identities=17%  Similarity=0.318  Sum_probs=42.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc----C---CcEEEeCCcchh--------HHHH-------------HHHHHHHHhCCC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP----L---NYTTVNRDTLGS--------WQKC-------------VSVMKAALDSGL  324 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~----~---~~~~i~~D~~~~--------~~~~-------------~~~~~~~l~~g~  324 (369)
                      .+++|+||+|+||||++..|+..    .   .+.+++.|.++.        |.+.             ...+...+....
T Consensus       138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~D  217 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNKH  217 (374)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCCC
Confidence            47899999999999999999864    2   356788888741        1110             112223344556


Q ss_pred             cEEEeCCCCCH
Q psy4598         325 SVVVDNTNPDK  335 (369)
Q Consensus       325 ~vIiD~tn~~~  335 (369)
                      .|+||.....+
T Consensus       218 lVLIDTaG~~~  228 (374)
T PRK14722        218 MVLIDTIGMSQ  228 (374)
T ss_pred             EEEEcCCCCCc
Confidence            78899887664

>PRK05439 pantothenate kinase; Provisional

Probab=96.98  E-value=0.00074  Score=65.13  Aligned_cols=38  Identities=21%  Similarity=0.219  Sum_probs=31.6

Q ss_pred             ccccEEEEEEcCCCCcHHHHHHHHhccC-------CcEEEeCCcc
Q psy4598         269 AALDSVLIMIGSQGSGKSSFVSTYLKPL-------NYTTVNRDTL  306 (369)
Q Consensus       269 ~~~~~lIll~G~pGSGKSTla~~L~~~~-------~~~~i~~D~~  306 (369)
                      ...|.+|.++|+|||||||+|+.|.+.+       .+.+|+.|.+
T Consensus        83 ~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdF  127 (311)
T PRK05439         83 QKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGF  127 (311)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccc
Confidence            3456799999999999999999998743       3678898887

>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB

Probab=96.97  E-value=0.0022  Score=57.64  Aligned_cols=42  Identities=31%  Similarity=0.481  Sum_probs=34.6

Q ss_pred             EEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecC
Q psy4598          27 IASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQ   79 (369)
Q Consensus        27 ~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq   79 (369)
                      +++||+||||..+..+           .+.|.+.++|++|+++|.+++|+|..
T Consensus         1 li~~D~DgTL~~~~~~-----------~~~~~~~~~l~~l~~~g~~~~i~TGR   42 (204)
T TIGR01484         1 LLFFDLDGTLLDPNAH-----------ELSPETIEALERLREAGVKVVLVTGR   42 (204)
T ss_pred             CEEEeCcCCCcCCCCC-----------cCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            4789999999964311           15788999999999999999999984

The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.

>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins

Probab=96.97  E-value=0.0039  Score=58.61  Aligned_cols=73  Identities=22%  Similarity=0.410  Sum_probs=56.4

Q ss_pred             CCCCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHH
Q psy4598          21 VCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKII  100 (369)
Q Consensus        21 ~~~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l  100 (369)
                      .-....+++||||.|||.+..         +-+...|.|.+.|.+|++.|..+++=|-.+            ++.+...+
T Consensus       118 ~~~~phVIVfDlD~TLItd~~---------~v~Ir~~~v~~sL~~Lk~~g~vLvLWSyG~------------~eHV~~sl  176 (297)
T PF05152_consen  118 VWEPPHVIVFDLDSTLITDEG---------DVRIRDPAVYDSLRELKEQGCVLVLWSYGN------------REHVRHSL  176 (297)
T ss_pred             cCCCCcEEEEECCCcccccCC---------ccccCChHHHHHHHHHHHcCCEEEEecCCC------------HHHHHHHH
Confidence            345567999999999997642         223457999999999999999999999732            34566677


Q ss_pred             HHcCCC--eEEEEecC
Q psy4598         101 KSLNVP--VQMFVATQ  114 (369)
Q Consensus       101 ~~l~i~--~~~~~~~~  114 (369)
                      ++++++  |++++|-+
T Consensus       177 ~~~~L~~~Fd~ii~~G  192 (297)
T PF05152_consen  177 KELKLEGYFDIIICGG  192 (297)
T ss_pred             HHhCCccccEEEEeCC
Confidence            788874  88888865

>CHL00181 cbbX CbbX; Provisional

Probab=96.96  E-value=0.0035  Score=59.99  Aligned_cols=23  Identities=22%  Similarity=0.322  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .-++|.|+||+||||+|+.+++.
T Consensus        60 ~~ill~G~pGtGKT~lAr~la~~   82 (287)
T CHL00181         60 LHMSFTGSPGTGKTTVALKMADI   82 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            35889999999999999999775

>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245

Probab=96.96  E-value=0.0046  Score=55.68  Aligned_cols=106  Identities=17%  Similarity=0.239  Sum_probs=69.1

Q ss_pred             CCCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHH
Q psy4598          22 CNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIK  101 (369)
Q Consensus        22 ~~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~  101 (369)
                      ....|.+.+|||+||+...+-     ...-+...=|++.+.|+.+.+ .|.|+|+|..+            .+.++.++.
T Consensus        18 ~~~kklLVLDLDeTLvh~~~~-----~~~~~~~kRP~l~eFL~~~~~-~feIvVwTAa~------------~~ya~~~l~   79 (195)
T TIGR02245        18 REGKKLLVLDIDYTLFDHRSP-----AETGEELMRPYLHEFLTSAYE-DYDIVIWSATS------------MKWIEIKMT   79 (195)
T ss_pred             CCCCcEEEEeCCCceEccccc-----CCCceEEeCCCHHHHHHHHHh-CCEEEEEecCC------------HHHHHHHHH
Confidence            455689999999999975431     123344567999999999998 69999999832            345666677


Q ss_pred             HcCCC------eEEEEec----------CCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCcc
Q psy4598         102 SLNVP------VQMFVAT----------QYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAA  151 (369)
Q Consensus       102 ~l~i~------~~~~~~~----------~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~  151 (369)
                      .+++.      +..+...          ....+-||-..+|.    +++  -..+++++++|-|..
T Consensus        80 ~l~~~~~~~~~i~~~ld~~~~~~~~~~~~g~~~vKdL~~lw~----~l~--~~~~~~ntiiVDd~p  139 (195)
T TIGR02245        80 ELGVLTNPNYKITFLLDSTAMITVHTPRRGKFDVKPLGVIWA----LLP--EFYSMKNTIMFDDLR  139 (195)
T ss_pred             HhcccCCccceEEEEeccccceeeEeeccCcEEEeecHHhhh----hcc--cCCCcccEEEEeCCH
Confidence            76541      2222210          11112566666665    222  124789999999987

This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.

>PRK14956 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.95  E-value=0.0058  Score=62.16  Aligned_cols=89  Identities=16%  Similarity=0.194  Sum_probs=53.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEE-------------------eCCcc----------hhHHHHHHHHHHHHh-
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTV-------------------NRDTL----------GSWQKCVSVMKAALD-  321 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i-------------------~~D~~----------~~~~~~~~~~~~~l~-  321 (369)
                      +..++++|+||+||||+|+.+++.+++..-                   +.|.+          ...+.+.+.+..... 
T Consensus        40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~  119 (484)
T PRK14956         40 GHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMG  119 (484)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhc
Confidence            467899999999999999999998765310                   01111          011222222222212 


Q ss_pred             -CCCcEEEeCC-CCCHHHHHHHHHHHHhcCCeEEEEEEeCC
Q psy4598         322 -SGLSVVVDNT-NPDKESRHRYIEAAKQHGVRCIAVHMNIS  360 (369)
Q Consensus       322 -~g~~vIiD~t-n~~~~~r~~~~~la~~~~~~v~~v~l~~~  360 (369)
                       ..+.+|||-. .++......+++...+....+++|.....
T Consensus       120 g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte  160 (484)
T PRK14956        120 GKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTE  160 (484)
T ss_pred             CCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCC
Confidence             2346788854 45677777888777765556666655443

>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family

Probab=96.94  E-value=0.0021  Score=60.05  Aligned_cols=56  Identities=25%  Similarity=0.320  Sum_probs=41.2

Q ss_pred             EEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC
Q psy4598          27 IASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP  106 (369)
Q Consensus        27 ~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~  106 (369)
                      ++++|+||||+....           . ..+...++|++|+++|++++|+|..+        .    ..+..+++.+|++
T Consensus         1 li~~DlDGTll~~~~-----------~-~~~~~~~~i~~l~~~g~~~~~~TgR~--------~----~~~~~~~~~~~~~   56 (256)
T TIGR01486         1 WIFTDLDGTLLDPHG-----------Y-DWGPAKEVLERLQELGIPVIPCTSKT--------A----AEVEYLRKELGLE   56 (256)
T ss_pred             CEEEcCCCCCcCCCC-----------c-CchHHHHHHHHHHHCCCeEEEEcCCC--------H----HHHHHHHHHcCCC
Confidence            378999999996531           1 24458899999999999999999632        1    2345667788764

This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta

>KOG0780|consensus

Probab=96.94  E-value=0.0061  Score=59.65  Aligned_cols=91  Identities=20%  Similarity=0.227  Sum_probs=61.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchh--HHHH------------------------HHHHHHH
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGS--WQKC------------------------VSVMKAA  319 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~--~~~~------------------------~~~~~~~  319 (369)
                      .|.+|+++|+.||||||.+..|+-++     .+..+..|++|.  ++++                        .+...+.
T Consensus       100 kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~ia~egv~~f  179 (483)
T KOG0780|consen  100 KPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVKIASEGVDRF  179 (483)
T ss_pred             CCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHHHHHHHHHHH
Confidence            46789999999999999999988654     577899999963  2222                        1222333


Q ss_pred             HhCCCcEE-EeCCCC---CHHHHHHHHHHHHhcCCeEEEEEEeCCH
Q psy4598         320 LDSGLSVV-VDNTNP---DKESRHRYIEAAKQHGVRCIAVHMNISK  361 (369)
Q Consensus       320 l~~g~~vI-iD~tn~---~~~~r~~~~~la~~~~~~v~~v~l~~~~  361 (369)
                      -+.+..+| +|....   ..+..+++++..+..+-.-+++++|.+.
T Consensus       180 Kke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasi  225 (483)
T KOG0780|consen  180 KKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASI  225 (483)
T ss_pred             HhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccc
Confidence            34555554 555443   2233455667777777777888888876

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=96.93  E-value=0.0054  Score=55.37  Aligned_cols=35  Identities=14%  Similarity=0.254  Sum_probs=29.2

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCCc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRDT  305 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~-----~~~~~i~~D~  305 (369)
                      ...++.+.|+||||||+++.+++..     ..+.+++.+.
T Consensus        11 ~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~   50 (209)
T TIGR02237        11 RGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG   50 (209)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence            3478999999999999999998753     2588899876

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=96.92  E-value=0.00067  Score=57.15  Aligned_cols=72  Identities=17%  Similarity=0.289  Sum_probs=40.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhccCCcE--EEeCCcchhHHHHH--------------HHHHHHHhCCCcEEEeCCCCCH-HH
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPLNYT--TVNRDTLGSWQKCV--------------SVMKAALDSGLSVVVDNTNPDK-ES  337 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~~~~--~i~~D~~~~~~~~~--------------~~~~~~l~~g~~vIiD~tn~~~-~~  337 (369)
                      |+|.|+||+|||++++.+++.++..  .++.....+...+.              .....++..+..+++|..|... +.
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEin~a~~~v   81 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEINRAPPEV   81 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSCGG--HHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCcccCCHHH
Confidence            7899999999999999999887533  23322211111110              1112233467788899888533 33


Q ss_pred             HHHHHHHHH
Q psy4598         338 RHRYIEAAK  346 (369)
Q Consensus       338 r~~~~~la~  346 (369)
                      ...+..+..
T Consensus        82 ~~~L~~ll~   90 (139)
T PF07728_consen   82 LESLLSLLE   90 (139)
T ss_dssp             HHTTHHHHS
T ss_pred             HHHHHHHHh
Confidence            344444443

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=96.92  E-value=0.0042  Score=61.46  Aligned_cols=73  Identities=16%  Similarity=0.285  Sum_probs=51.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-------CcEEEeCCcchh--------HHHH-------------HHHHHHHHhCC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-------NYTTVNRDTLGS--------WQKC-------------VSVMKAALDSG  323 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-------~~~~i~~D~~~~--------~~~~-------------~~~~~~~l~~g  323 (369)
                      ..+|+|+||.|.||||-...|+.++       .+-+|+.|.+|.        |.++             ...+...++..
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~~  282 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRDC  282 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhcC
Confidence            5799999999999987777776543       578999999862        3221             34455566667


Q ss_pred             CcEEEeCCCCCHHHHHHHHHH
Q psy4598         324 LSVVVDNTNPDKESRHRYIEA  344 (369)
Q Consensus       324 ~~vIiD~tn~~~~~r~~~~~l  344 (369)
                      ..|.||..+.+........++
T Consensus       283 d~ILVDTaGrs~~D~~~i~el  303 (407)
T COG1419         283 DVILVDTAGRSQYDKEKIEEL  303 (407)
T ss_pred             CEEEEeCCCCCccCHHHHHHH
Confidence            788899988766555444443

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=96.92  E-value=0.0018  Score=59.06  Aligned_cols=58  Identities=21%  Similarity=0.263  Sum_probs=37.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchhHHHHHHHHHHHHhCCCcEEEeCCC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTN  332 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~~~~~~~~~~~~l~~g~~vIiD~tn  332 (369)
                      +..|+|.|+||+||||+++.++...     .+.+++.+.+....   ......+.....+|||...
T Consensus        38 ~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~lLvIDdi~  100 (226)
T TIGR03420        38 DRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD---PEVLEGLEQADLVCLDDVE  100 (226)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH---HHHHhhcccCCEEEEeChh
Confidence            4678999999999999999998653     45666665543211   1122223334466777664

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>COG4359 Uncharacterized conserved protein [Function unknown]

Probab=96.91  E-value=0.0032  Score=55.46  Aligned_cols=90  Identities=12%  Similarity=0.212  Sum_probs=56.2

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcC----CC-eE-----EE---------EecCC
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLN----VP-VQ-----MF---------VATQY  115 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~----i~-~~-----~~---------~~~~~  115 (369)
                      +.|+..+.++..++++.+++|+|.  |+          .-.|..+++.+.    ++ ++     .+         +.+.+
T Consensus        74 Idp~fKef~e~ike~di~fiVvSs--Gm----------~~fI~~lfe~ivgke~i~~idi~sn~~~ih~dg~h~i~~~~d  141 (220)
T COG4359          74 IDPGFKEFVEWIKEHDIPFIVVSS--GM----------DPFIYPLFEGIVGKERIYCIDIVSNNDYIHIDGQHSIKYTDD  141 (220)
T ss_pred             cCccHHHHHHHHHHcCCCEEEEeC--CC----------chHHHHHHHhhccccceeeeEEeecCceEcCCCceeeecCCc
Confidence            468999999999999999999997  43          223444444443    32 11     11         12223


Q ss_pred             CCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc
Q psy4598         116 DRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF  180 (369)
Q Consensus       116 ~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f  180 (369)
                      +.|.--.+..+..+.+.        .+..||+||+.                +|+.+|+..-+-|
T Consensus       142 s~fG~dK~~vI~~l~e~--------~e~~fy~GDsv----------------sDlsaaklsDllF  182 (220)
T COG4359         142 SQFGHDKSSVIHELSEP--------NESIFYCGDSV----------------SDLSAAKLSDLLF  182 (220)
T ss_pred             cccCCCcchhHHHhhcC--------CceEEEecCCc----------------ccccHhhhhhhHh
Confidence            33333334555555543        46699999998                6777777666655

>KOG1969|consensus

Probab=96.90  E-value=0.0018  Score=67.81  Aligned_cols=54  Identities=20%  Similarity=0.316  Sum_probs=38.3

Q ss_pred             ccccccEEEEEEcCCCCcHHHHHHHHhccCCcEEE--eCCcchhHHHHHHHHHHHH
Q psy4598         267 MKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTV--NRDTLGSWQKCVSVMKAAL  320 (369)
Q Consensus       267 ~~~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i--~~D~~~~~~~~~~~~~~~l  320 (369)
                      ..+|.+++.+||||||-||||+|+.++++.|+.++  |+.+-|+-..+.+.+..++
T Consensus       321 s~RP~kKilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~av  376 (877)
T KOG1969|consen  321 SKRPPKKILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAV  376 (877)
T ss_pred             cCCCccceEEeecCCCCChhHHHHHHHHhcCceEEEecccccccHHHHHHHHHHHH
Confidence            34555689999999999999999999999876555  4545454444444444333

>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional

Probab=96.89  E-value=0.002  Score=63.24  Aligned_cols=35  Identities=20%  Similarity=0.272  Sum_probs=29.1

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCC
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRD  304 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D  304 (369)
                      ..|..++|.||||||||.+|++++..+++.+|..+
T Consensus       146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~vs  180 (413)
T PLN00020        146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMS  180 (413)
T ss_pred             CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEE
Confidence            45688899999999999999999999876555443

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=96.89  E-value=0.0028  Score=60.71  Aligned_cols=75  Identities=13%  Similarity=0.201  Sum_probs=43.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCc--EEEeCCcchhHHHHHHHHHHHHhCCCcEEEeCCC-CCHHHHHHHHHHHHh
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNY--TTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTN-PDKESRHRYIEAAKQ  347 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~--~~i~~D~~~~~~~~~~~~~~~l~~g~~vIiD~tn-~~~~~r~~~~~la~~  347 (369)
                      +..+++.||||+|||++++.++..++.  ..++.........+... ...+..+..++||... ........+..+...
T Consensus        30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~~-l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~  107 (305)
T TIGR00635        30 LDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAAI-LTNLEEGDVLFIDEIHRLSPAVEELLYPAMED  107 (305)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHHH-HHhcccCCEEEEehHhhhCHHHHHHhhHHHhh
Confidence            445789999999999999999988753  33333222212222222 2334556677888643 233334445444443

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PRK13342 recombination factor protein RarA; Reviewed

Probab=96.88  E-value=0.0044  Score=62.28  Aligned_cols=74  Identities=12%  Similarity=0.212  Sum_probs=43.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEE--EeCCcc--hhHHHHHHHHHHHHh--CCCcEEEeCCC-CCHHHHHHHHHHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTT--VNRDTL--GSWQKCVSVMKAALD--SGLSVVVDNTN-PDKESRHRYIEAA  345 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~--i~~D~~--~~~~~~~~~~~~~l~--~g~~vIiD~tn-~~~~~r~~~~~la  345 (369)
                      .-++|.|+||+||||+|+.+++..+..+  ++....  ...+.+.+.+.....  .+..++||... .+......++...
T Consensus        37 ~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~l  116 (413)
T PRK13342         37 SSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHV  116 (413)
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHh
Confidence            4578899999999999999998765433  333221  122333333333232  34466777654 3445555555554


Q ss_pred             H
Q psy4598         346 K  346 (369)
Q Consensus       346 ~  346 (369)
                      .
T Consensus       117 e  117 (413)
T PRK13342        117 E  117 (413)
T ss_pred             h
Confidence            4

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=96.88  E-value=0.001  Score=63.69  Aligned_cols=38  Identities=21%  Similarity=0.286  Sum_probs=29.9

Q ss_pred             ccccEEEEEEcCCCCcHHHHHHHHhccC-------CcEEEeCCcc
Q psy4598         269 AALDSVLIMIGSQGSGKSSFVSTYLKPL-------NYTTVNRDTL  306 (369)
Q Consensus       269 ~~~~~lIll~G~pGSGKSTla~~L~~~~-------~~~~i~~D~~  306 (369)
                      ...|.+|-+.|++||||||+++.|...+       .+.+++.|.+
T Consensus        59 ~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f  103 (290)
T TIGR00554        59 AKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGF  103 (290)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccc
Confidence            3456889999999999999998875432       3667888876

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>COG4087 Soluble P-type ATPase [General function prediction only]

Probab=96.87  E-value=0.0042  Score=51.75  Aligned_cols=87  Identities=20%  Similarity=0.325  Sum_probs=65.2

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCeE-EEEecCCCCCCCCchhHHHHHHHHh
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQ-MFVATQYDRYRKPVPGMWEYLSQEK  133 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~~-~~~~~~~~~~rKP~~gm~~~~~~~~  133 (369)
                      +++.|++.|++|++. ..|+|+|-.            -+..+.++++-.|+|.+ +++..+        +.|=..++.++
T Consensus        31 lf~ev~e~iqeL~d~-V~i~IASgD------------r~gsl~~lae~~gi~~~rv~a~a~--------~e~K~~ii~eL   89 (152)
T COG4087          31 LFSEVSETIQELHDM-VDIYIASGD------------RKGSLVQLAEFVGIPVERVFAGAD--------PEMKAKIIREL   89 (152)
T ss_pred             EcHhhHHHHHHHHHh-heEEEecCC------------cchHHHHHHHHcCCceeeeecccC--------HHHHHHHHHHh
Confidence            899999999999999 999999962            23356777888899987 444332        44555666654


Q ss_pred             cCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         134 NGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       134 ~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    -.-+.++||||-+                +|+.+-+++.+-..+
T Consensus        90 k----k~~~k~vmVGnGa----------------ND~laLr~ADlGI~t  118 (152)
T COG4087          90 K----KRYEKVVMVGNGA----------------NDILALREADLGICT  118 (152)
T ss_pred             c----CCCcEEEEecCCc----------------chHHHhhhcccceEE
Confidence            2    2347899999999                899998888777544

>PRK14962 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.87  E-value=0.0063  Score=62.21  Aligned_cols=27  Identities=30%  Similarity=0.581  Sum_probs=23.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCC
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLN  297 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~  297 (369)
                      .+..++|.||||+||||+|+.+++.++
T Consensus        35 l~~~~Lf~GPpGtGKTTlA~~lA~~l~   61 (472)
T PRK14962         35 ISHAYIFAGPRGTGKTTVARILAKSLN   61 (472)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            356789999999999999999988754

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=96.86  E-value=0.0018  Score=60.99  Aligned_cols=73  Identities=18%  Similarity=0.359  Sum_probs=45.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCc--EEEeC-------CcchhHH---------HHH----------------HHHHHH
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNY--TTVNR-------DTLGSWQ---------KCV----------------SVMKAA  319 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~--~~i~~-------D~~~~~~---------~~~----------------~~~~~~  319 (369)
                      -|+|.|+||+|||++|+.+++.++.  ..++.       |.+..+.         ...                ..+..+
T Consensus        23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A  102 (262)
T TIGR02640        23 PVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLA  102 (262)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHHH
Confidence            4678999999999999999987654  33332       2222111         000                112334


Q ss_pred             HhCCCcEEEeCCCC-CHHHHHHHHHHHH
Q psy4598         320 LDSGLSVVVDNTNP-DKESRHRYIEAAK  346 (369)
Q Consensus       320 l~~g~~vIiD~tn~-~~~~r~~~~~la~  346 (369)
                      +..|..+++|-.+. .++....+..+..
T Consensus       103 ~~~g~~lllDEi~r~~~~~q~~Ll~~Le  130 (262)
T TIGR02640       103 VREGFTLVYDEFTRSKPETNNVLLSVFE  130 (262)
T ss_pred             HHcCCEEEEcchhhCCHHHHHHHHHHhc
Confidence            56777899998874 4555566666554

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=96.86  E-value=0.0045  Score=52.52  Aligned_cols=33  Identities=18%  Similarity=0.385  Sum_probs=25.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTL  306 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~  306 (369)
                      ++++.|+||+||||++..++...     .+.+++.+..
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~   38 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEE   38 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcc
Confidence            36899999999999999997653     4567776653

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.86  E-value=0.012  Score=52.31  Aligned_cols=75  Identities=21%  Similarity=0.253  Sum_probs=50.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC----CcEEEeC--------Cc-ch-hHHHHHHHHHHHHhCCCcEEEeCC--CCCHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL----NYTTVNR--------DT-LG-SWQKCVSVMKAALDSGLSVVVDNT--NPDKE  336 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~----~~~~i~~--------D~-~~-~~~~~~~~~~~~l~~g~~vIiD~t--n~~~~  336 (369)
                      .++.++|++||||||+.+.++-..    +.+.++.        +. +. .-++....++..+.....+++|-+  +++..
T Consensus        26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv~laral~~~p~lllLDEPts~LD~~  105 (177)
T cd03222          26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIE  105 (177)
T ss_pred             CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHH
Confidence            578999999999999999998653    3333322        11 21 123445667777777788899964  56778


Q ss_pred             HHHHHHHHHHh
Q psy4598         337 SRHRYIEAAKQ  347 (369)
Q Consensus       337 ~r~~~~~la~~  347 (369)
                      .+..+.++.++
T Consensus       106 ~~~~l~~~l~~  116 (177)
T cd03222         106 QRLNAARAIRR  116 (177)
T ss_pred             HHHHHHHHHHH
Confidence            87766665543

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PLN02887 hydrolase family protein

Probab=96.86  E-value=0.0024  Score=66.67  Aligned_cols=45  Identities=33%  Similarity=0.375  Sum_probs=38.3

Q ss_pred             CCCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEec
Q psy4598          22 CNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTN   78 (369)
Q Consensus        22 ~~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TN   78 (369)
                      +++.|++++||||||+....            .+.+...++|++|+++|++++|+|-
T Consensus       305 ~~~iKLIa~DLDGTLLn~d~------------~Is~~t~eAI~kl~ekGi~~vIATG  349 (580)
T PLN02887        305 KPKFSYIFCDMDGTLLNSKS------------QISETNAKALKEALSRGVKVVIATG  349 (580)
T ss_pred             ccCccEEEEeCCCCCCCCCC------------ccCHHHHHHHHHHHHCCCeEEEEcC
Confidence            35679999999999996531            2578899999999999999999996

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.85  E-value=0.013  Score=52.85  Aligned_cols=23  Identities=26%  Similarity=0.592  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccC
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      +|+++|++||||||+.+.+....
T Consensus         3 lilI~GptGSGKTTll~~ll~~~   25 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYI   25 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            68999999999999999877654

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>PHA02544 44 clamp loader, small subunit; Provisional

Probab=96.85  E-value=0.0089  Score=57.52  Aligned_cols=78  Identities=12%  Similarity=0.159  Sum_probs=45.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCC--cEEEeCCcchhHHHHHHHHHHHH------hCCCcEEEeCCCC--CHHHHHH
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLN--YTTVNRDTLGSWQKCVSVMKAAL------DSGLSVVVDNTNP--DKESRHR  340 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~--~~~i~~D~~~~~~~~~~~~~~~l------~~g~~vIiD~tn~--~~~~r~~  340 (369)
                      .|.++++.|+||+||||+++.+++..+  ...++...-+ ...+...+....      ...+.+|+|....  .......
T Consensus        42 ~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~~~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~  120 (316)
T PHA02544         42 IPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSDCR-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRH  120 (316)
T ss_pred             CCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCccc-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHH
Confidence            457888899999999999999998754  4455554411 221111111111      2345788887542  3334445


Q ss_pred             HHHHHHhcC
Q psy4598         341 YIEAAKQHG  349 (369)
Q Consensus       341 ~~~la~~~~  349 (369)
                      +..+..+..
T Consensus       121 L~~~le~~~  129 (316)
T PHA02544        121 LRSFMEAYS  129 (316)
T ss_pred             HHHHHHhcC
Confidence            555444433

>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional

Probab=96.85  E-value=0.00074  Score=67.50  Aligned_cols=50  Identities=20%  Similarity=0.403  Sum_probs=40.7

Q ss_pred             cccccccccchhhhhhhccccccEEEEEEcCCCCcHHHHHHHHhccCCcE
Q psy4598         250 TTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYT  299 (369)
Q Consensus       250 ~~i~r~~~~~~~~~~~~~~~~~~~lIll~G~pGSGKSTla~~L~~~~~~~  299 (369)
                      +.|-.+....|+--.+...+.....|+|+|.+|||||||+++|++.++..
T Consensus       197 T~IR~~p~~~w~~i~~~vr~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~  246 (399)
T PRK08099        197 TQIRENPFRYWEYIPTEVRPFFVRTVAILGGESSGKSTLVNKLANIFNTT  246 (399)
T ss_pred             HHHhhCHHHHHHhcCHHHhhCCCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence            34455566667777777778888999999999999999999999987654

>PRK10671 copA copper exporting ATPase; Provisional

Probab=96.83  E-value=0.0065  Score=66.52  Aligned_cols=105  Identities=18%  Similarity=0.201  Sum_probs=71.2

Q ss_pred             eEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC
Q psy4598          26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV  105 (369)
Q Consensus        26 k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i  105 (369)
                      .++++-.||+++.--       ...|  .++|++.+.|++|++.|++++++|+..            ....+.+++.+|+
T Consensus       631 ~~v~va~~~~~~g~~-------~l~d--~~r~~a~~~i~~L~~~gi~v~~~Tgd~------------~~~a~~ia~~lgi  689 (834)
T PRK10671        631 TPVLLAVDGKAAALL-------AIRD--PLRSDSVAALQRLHKAGYRLVMLTGDN------------PTTANAIAKEAGI  689 (834)
T ss_pred             eEEEEEECCEEEEEE-------EccC--cchhhHHHHHHHHHHCCCeEEEEcCCC------------HHHHHHHHHHcCC
Confidence            456666677765221       0111  268999999999999999999999943            2345667888998


Q ss_pred             CeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc
Q psy4598         106 PVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF  180 (369)
Q Consensus       106 ~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f  180 (369)
                      . +++...      .|..  -..+++++    ....++++||||..                +|+.+++++|+..
T Consensus       690 ~-~~~~~~------~p~~--K~~~i~~l----~~~~~~v~~vGDg~----------------nD~~al~~Agvgi  735 (834)
T PRK10671        690 D-EVIAGV------LPDG--KAEAIKRL----QSQGRQVAMVGDGI----------------NDAPALAQADVGI  735 (834)
T ss_pred             C-EEEeCC------CHHH--HHHHHHHH----hhcCCEEEEEeCCH----------------HHHHHHHhCCeeE
Confidence            5 222221      1221  23355554    34567899999999                8999999999943

>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2

Probab=96.82  E-value=0.0047  Score=54.72  Aligned_cols=92  Identities=20%  Similarity=0.226  Sum_probs=54.5

Q ss_pred             EEcCCCCcHHHHHHHHhccC---Cc-EEEe---CCc-c----hh---------------------HHHHHHHHHHHHhCC
Q psy4598         277 MIGSQGSGKSSFVSTYLKPL---NY-TTVN---RDT-L----GS---------------------WQKCVSVMKAALDSG  323 (369)
Q Consensus       277 l~G~pGSGKSTla~~L~~~~---~~-~~i~---~D~-~----~~---------------------~~~~~~~~~~~l~~g  323 (369)
                      +=|+.||||||+++.|.+.+   +. +++.   .+. +    +.                     ...+...+..+++.|
T Consensus         1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~ir~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I~~~l~~g   80 (186)
T PF02223_consen    1 FEGIDGSGKTTQIRLLAEALKEKGYKVIITFPPGSTPIGELIRELLRSESELSPEAEALLFAADRAWHLARVIRPALKRG   80 (186)
T ss_dssp             EEESTTSSHHHHHHHHHHHHHHTTEEEEEEESSTSSHHHHHHHHHHHTSSTCGHHHHHHHHHHHHHHHHHHTHHHHHHTT
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHcCCcccccCCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            34999999999999999875   32 2222   111 1    10                     012233456678899


Q ss_pred             CcEEEeCCCCCHH---------HHHHHHHHHHhcC--CeEEEEEEeCCHHHHHHHc
Q psy4598         324 LSVVVDNTNPDKE---------SRHRYIEAAKQHG--VRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       324 ~~vIiD~tn~~~~---------~r~~~~~la~~~~--~~v~~v~l~~~~e~~~~Rn  368 (369)
                      ..||+|-...+.-         .......+.+...  .|=.++++++|++++.+|.
T Consensus        81 ~~VI~DRy~~S~lay~~~~~~~~~~~~~~~~~~~~~~~PDl~~~Ldv~pe~~~~R~  136 (186)
T PF02223_consen   81 KIVICDRYIYSTLAYQGAKGELDIDWIWRLNKDIFLPKPDLTFFLDVDPEEALKRI  136 (186)
T ss_dssp             SEEEEESEHHHHHHHHTTTTSSTHHHHHHHHHHHHTTE-SEEEEEECCHHHHHHHH
T ss_pred             CEEEEechhHHHHHhCccccCCcchhhhHHHHHhcCCCCCEEEEEecCHHHHHHHH
Confidence            9999986422110         0112222222222  5567899999999999984

7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=96.81  E-value=0.012  Score=59.60  Aligned_cols=34  Identities=26%  Similarity=0.382  Sum_probs=27.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC----CcEEEeCCcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL----NYTTVNRDTL  306 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~----~~~~i~~D~~  306 (369)
                      ..+-++||+||||||+++.+.--+    +.+.+|.-++
T Consensus       363 ~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l  400 (580)
T COG4618         363 EALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADL  400 (580)
T ss_pred             ceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhh
Confidence            356789999999999999998653    6778876655

>PRK14960 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.81  E-value=0.0087  Score=62.99  Aligned_cols=89  Identities=12%  Similarity=0.157  Sum_probs=53.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEE--------------------------EeCCc---chhHHHHHHHHHHHH--
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTT--------------------------VNRDT---LGSWQKCVSVMKAAL--  320 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~--------------------------i~~D~---~~~~~~~~~~~~~~l--  320 (369)
                      +..++|+|++|+||||+|+.+++.+++..                          ++...   +...+.+...+...-  
T Consensus        37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~  116 (702)
T PRK14960         37 HHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQ  116 (702)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhc
Confidence            57889999999999999999998875421                          11110   111222222222221  


Q ss_pred             hCCCcEEEeCC-CCCHHHHHHHHHHHHhcCCeEEEEEEeCC
Q psy4598         321 DSGLSVVVDNT-NPDKESRHRYIEAAKQHGVRCIAVHMNIS  360 (369)
Q Consensus       321 ~~g~~vIiD~t-n~~~~~r~~~~~la~~~~~~v~~v~l~~~  360 (369)
                      ...+.+|||.. .++......+++..++..-.+.+|.....
T Consensus       117 gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd  157 (702)
T PRK14960        117 GRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTD  157 (702)
T ss_pred             CCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECC
Confidence            23457888865 44667778888888775444455554433

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=96.81  E-value=0.0052  Score=56.29  Aligned_cols=34  Identities=18%  Similarity=0.343  Sum_probs=27.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTL  306 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~  306 (369)
                      ..++++|+||+|||++++.++...     .+.+++...+
T Consensus        43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~   81 (227)
T PRK08903         43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP   81 (227)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence            468999999999999999998754     5666666543

>PRK14955 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.81  E-value=0.009  Score=59.78  Aligned_cols=28  Identities=25%  Similarity=0.438  Sum_probs=24.1

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNY  298 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~  298 (369)
                      .+..+++.||||+||||+|+.+++.+.+
T Consensus        37 ~~ha~lf~Gp~G~GKtt~A~~~a~~l~c   64 (397)
T PRK14955         37 VGHGYIFSGLRGVGKTTAARVFAKAVNC   64 (397)
T ss_pred             cceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence            3567899999999999999999987654

>cd01394 radB RadB

Probab=96.80  E-value=0.0084  Score=54.52  Aligned_cols=34  Identities=15%  Similarity=0.291  Sum_probs=28.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDT  305 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~  305 (369)
                      ..++++.|+|||||||++.+++...     ++.+++.+.
T Consensus        19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e~   57 (218)
T cd01394          19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTEG   57 (218)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECCC
Confidence            4689999999999999999988642     567888764

The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.

>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX

Probab=96.80  E-value=0.005  Score=58.77  Aligned_cols=22  Identities=18%  Similarity=0.359  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~  295 (369)
                      -+++.|+||+||||+|+.+++.
T Consensus        60 ~vll~G~pGTGKT~lA~~ia~~   81 (284)
T TIGR02880        60 HMSFTGNPGTGKTTVALRMAQI   81 (284)
T ss_pred             eEEEEcCCCCCHHHHHHHHHHH
Confidence            5889999999999999877664

Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.

>PRK14949 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.79  E-value=0.0086  Score=64.91  Aligned_cols=90  Identities=13%  Similarity=0.180  Sum_probs=55.7

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEE--------------------------EeCCc-c--hhHHHHHHHHHHHH-
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTT--------------------------VNRDT-L--GSWQKCVSVMKAAL-  320 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~--------------------------i~~D~-~--~~~~~~~~~~~~~l-  320 (369)
                      .+..++|+|+||+||||+|+.+++.+++..                          ++... .  ...+.+.+.+...- 
T Consensus        37 l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~  116 (944)
T PRK14949         37 LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPS  116 (944)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhh
Confidence            457789999999999999999999875531                          12111 0  11223333222221 


Q ss_pred             -hCCCcEEEeC-CCCCHHHHHHHHHHHHhcCCeEEEEEEeCC
Q psy4598         321 -DSGLSVVVDN-TNPDKESRHRYIEAAKQHGVRCIAVHMNIS  360 (369)
Q Consensus       321 -~~g~~vIiD~-tn~~~~~r~~~~~la~~~~~~v~~v~l~~~  360 (369)
                       ...+.+|||- -.++......+++...+..-.++++.....
T Consensus       117 ~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe  158 (944)
T PRK14949        117 RGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTD  158 (944)
T ss_pred             cCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCC
Confidence             1234778884 445777788888888776656666665443

>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family

Probab=96.79  E-value=0.011  Score=54.70  Aligned_cols=58  Identities=22%  Similarity=0.247  Sum_probs=38.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCCcchhHHHHHHHH-------HHHHhCCCcEEEeCC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRDTLGSWQKCVSVM-------KAALDSGLSVVVDNT  331 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~-----~~~~~i~~D~~~~~~~~~~~~-------~~~l~~g~~vIiD~t  331 (369)
                      ..++++.|+||||||+++.++...     ..+.+++.+.-  .+.+.+.+       ......|...++|+.
T Consensus        21 gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~--~~~i~~~~~~~g~~~~~~~~~g~l~~~d~~   90 (237)
T TIGR03877        21 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEH--PVQVRRNMAQFGWDVRKYEEEGKFAIVDAF   90 (237)
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCC--HHHHHHHHHHhCCCHHHHhhcCCEEEEecc
Confidence            468999999999999999886543     25778887652  22222222       234466777788764

Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.

>PRK05642 DNA replication initiation factor; Validated

Probab=96.79  E-value=0.0053  Score=56.89  Aligned_cols=57  Identities=16%  Similarity=0.147  Sum_probs=37.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCCcchhHHHHHHHHHHHHhCCCcEEEeCCC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTN  332 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~-----~~~~~i~~D~~~~~~~~~~~~~~~l~~g~~vIiD~tn  332 (369)
                      ..++|.|++|+|||+++++++..     ..+.+++.+.+...   .....+.+.....+|+|+..
T Consensus        46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~---~~~~~~~~~~~d~LiiDDi~  107 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR---GPELLDNLEQYELVCLDDLD  107 (234)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh---hHHHHHhhhhCCEEEEechh
Confidence            46789999999999999998642     46778887665321   12233334444466777764

>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit

Probab=96.76  E-value=0.0012  Score=65.75  Aligned_cols=35  Identities=23%  Similarity=0.361  Sum_probs=30.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDT  305 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~  305 (369)
                      .|.-|+|.||||+|||++|++|++.+++.++..|.
T Consensus        46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vda   80 (441)
T TIGR00390        46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA   80 (441)
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeec
Confidence            35678999999999999999999998887777763

This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.

>PRK14963 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.75  E-value=0.013  Score=60.52  Aligned_cols=28  Identities=21%  Similarity=0.381  Sum_probs=24.4

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccCC
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPLN  297 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~~  297 (369)
                      .++.+++|+|+||+||||+|+.+++.+.
T Consensus        34 ~l~ha~Lf~GppGtGKTTlA~~lA~~l~   61 (504)
T PRK14963         34 RLGHAYLFSGPRGVGKTTTARLIAMAVN   61 (504)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            3567889999999999999999988764

>PLN03025 replication factor C subunit; Provisional

Probab=96.75  E-value=0.0077  Score=58.38  Aligned_cols=23  Identities=30%  Similarity=0.525  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccC
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      -+++.||||+||||+++.+++.+
T Consensus        36 ~lll~Gp~G~GKTtla~~la~~l   58 (319)
T PLN03025         36 NLILSGPPGTGKTTSILALAHEL   58 (319)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            36789999999999999999875

>KOG1533|consensus

Probab=96.74  E-value=0.0067  Score=55.65  Aligned_cols=32  Identities=34%  Similarity=0.476  Sum_probs=23.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDT  305 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~  305 (369)
                      --+++|||||||||...-..+-+     ....+|.|.
T Consensus         4 gqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDP   40 (290)
T KOG1533|consen    4 GQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDP   40 (290)
T ss_pred             ceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCC
Confidence            34789999999999987766532     346666664

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=96.73  E-value=0.00035  Score=58.86  Aligned_cols=36  Identities=28%  Similarity=0.508  Sum_probs=31.2

Q ss_pred             EEEEEcCCCCCcchhhhhccCCCcccccccccccch
Q psy4598         225 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSW  260 (369)
Q Consensus       225 i~v~~g~~~~gks~~~~~~~~~~~~~~i~r~~~~~~  260 (369)
                      +++++|+||||||||++.+....++..|+.|.+...
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~~~~~i~~D~~~~~   36 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRLGAVVISQDEIRRR   36 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHSTEEEEEHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHCCCEEEeHHHHHHH
Confidence            578999999999999999886677889999987763

...

>PHA02244 ATPase-like protein

Probab=96.73  E-value=0.0049  Score=60.67  Aligned_cols=70  Identities=16%  Similarity=0.223  Sum_probs=43.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hhHHH----------HHHHHHHHHhCCCcEEEeCCCCC-HHHHHHHH
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GSWQK----------CVSVMKAALDSGLSVVVDNTNPD-KESRHRYI  342 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~~~~----------~~~~~~~~l~~g~~vIiD~tn~~-~~~r~~~~  342 (369)
                      |+|.|+||+|||++|++++..++..++....+ ..+..          .......++..|..+++|-.+.. +.....+.
T Consensus       122 VLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~~~GgvLiLDEId~a~p~vq~~L~  201 (383)
T PHA02244        122 VFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAFKKGGLFFIDEIDASIPEALIIIN  201 (383)
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHhhcCCEEEEeCcCcCCHHHHHHHH
Confidence            68899999999999999998876554433222 11100          11123445678889999988753 33334444


Q ss_pred             HH
Q psy4598         343 EA  344 (369)
Q Consensus       343 ~l  344 (369)
                      .+
T Consensus       202 ~l  203 (383)
T PHA02244        202 SA  203 (383)
T ss_pred             HH
Confidence            43

>PRK07429 phosphoribulokinase; Provisional

Probab=96.73  E-value=0.0018  Score=63.04  Aligned_cols=38  Identities=24%  Similarity=0.362  Sum_probs=31.8

Q ss_pred             ccccEEEEEEcCCCCcHHHHHHHHhccCC---cEEEeCCcc
Q psy4598         269 AALDSVLIMIGSQGSGKSSFVSTYLKPLN---YTTVNRDTL  306 (369)
Q Consensus       269 ~~~~~lIll~G~pGSGKSTla~~L~~~~~---~~~i~~D~~  306 (369)
                      ...+.+|-++|++||||||+++.|+..++   ..+++.|.+
T Consensus         5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~   45 (327)
T PRK07429          5 PDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDY   45 (327)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEeccc
Confidence            34567999999999999999999998865   567788876

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=96.72  E-value=0.011  Score=57.26  Aligned_cols=23  Identities=35%  Similarity=0.566  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccC
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      .+++.||||+||||+++.+++.+
T Consensus        38 ~lll~Gp~GtGKT~la~~~~~~l   60 (337)
T PRK12402         38 HLLVQGPPGSGKTAAVRALAREL   60 (337)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            57899999999999999998764

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=96.72  E-value=0.0012  Score=57.39  Aligned_cols=26  Identities=19%  Similarity=0.570  Sum_probs=21.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhccCCcEEE
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPLNYTTV  301 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~~~~~i  301 (369)
                      |+|+|.|||||||+++.|++. ++.++
T Consensus         2 I~i~G~~stGKTTL~~~L~~~-g~~~v   27 (163)
T PF13521_consen    2 IVITGGPSTGKTTLIEALAAR-GYPVV   27 (163)
T ss_dssp             EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred             EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence            789999999999999999998 77766

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.71  E-value=0.014  Score=54.11  Aligned_cols=32  Identities=16%  Similarity=0.286  Sum_probs=25.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC----CcEEEeCC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL----NYTTVNRD  304 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~----~~~~i~~D  304 (369)
                      .+|-+.||+||||||+-+.++--.    |-+.++..
T Consensus        30 EfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~   65 (248)
T COG1116          30 EFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGR   65 (248)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCc
Confidence            688999999999999999998642    44555444

>PRK08084 DNA replication initiation factor; Provisional

Probab=96.68  E-value=0.0039  Score=57.78  Aligned_cols=33  Identities=18%  Similarity=0.280  Sum_probs=25.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDT  305 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~  305 (369)
                      ..+++.|||||||||++.+++...     .+.+++.+.
T Consensus        46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~   83 (235)
T PRK08084         46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK   83 (235)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence            468999999999999999988653     245665554

>PF13479 AAA_24: AAA domain

Probab=96.68  E-value=0.0057  Score=55.79  Aligned_cols=56  Identities=18%  Similarity=0.411  Sum_probs=36.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCc-------------c--hhHHHHHHHHHHH---HhCCCcEEEeCC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDT-------------L--GSWQKCVSVMKAA---LDSGLSVVVDNT  331 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~-------------~--~~~~~~~~~~~~~---l~~g~~vIiD~t  331 (369)
                      .-++|.|+||+||||++..+-+   ..+|+.|.             +  ..|+.+.+...+.   ...-..||||+.
T Consensus         4 ~~~lIyG~~G~GKTt~a~~~~k---~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsi   77 (213)
T PF13479_consen    4 IKILIYGPPGSGKTTLAASLPK---PLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSI   77 (213)
T ss_pred             eEEEEECCCCCCHHHHHHhCCC---eEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECH
Confidence            4579999999999999999933   23443332             2  3566666654333   333457888864

>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional

Probab=96.68  E-value=0.0021  Score=69.91  Aligned_cols=34  Identities=26%  Similarity=0.395  Sum_probs=32.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      .+|.+.|||||||||+|+.|++.+++.+|+.+.+
T Consensus        35 ~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~   68 (863)
T PRK12269         35 VIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSF   68 (863)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHH
Confidence            5899999999999999999999999999999885

>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B

Probab=96.67  E-value=0.0032  Score=55.50  Aligned_cols=82  Identities=17%  Similarity=0.243  Sum_probs=52.3

Q ss_pred             cccHH----HHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCCCCC---------CCC-
Q psy4598          56 FSNIE----SVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRY---------RKP-  121 (369)
Q Consensus        56 ~p~v~----~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~~~~~~~~~~~~---------rKP-  121 (369)
                      +|++.    +.|++++++|++++|+|..            ....++.+++.+|++...++|+.....         ..+ 
T Consensus        87 ~~~~~~~~~e~i~~~~~~~~~v~IvS~~------------~~~~i~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~~~~~~  154 (192)
T PF12710_consen   87 FPGFIPDAMELIRELKDNGIKVVIVSGS------------PDEIIEPIAERLGIDDDNVIGNELFDNGGGIFTGRITGSN  154 (192)
T ss_dssp             CTTCHTTHHHHHHHHHHTTSEEEEEEEE------------EHHHHHHHHHHTTSSEGGEEEEEEECTTCCEEEEEEEEEE
T ss_pred             CcCchhhHHHHHHHHHHCCCEEEEECCC------------cHHHHHHHHHHcCCCceEEEEEeeeecccceeeeeECCCC
Confidence            36667    9999999999999999972            345677778899987532333321100         001 


Q ss_pred             ---chhHHHHHHHHhcCCccccCCccEEeeCcc
Q psy4598         122 ---VPGMWEYLSQEKNGDLAIDISQSFYAGDAA  151 (369)
Q Consensus       122 ---~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~  151 (369)
                         +..++..+....+ . .++...++||||+.
T Consensus       155 ~~~K~~~l~~~~~~~~-~-~~~~~~~~~iGDs~  185 (192)
T PF12710_consen  155 CGGKAEALKELYIRDE-E-DIDPDRVIAIGDSI  185 (192)
T ss_dssp             ESHHHHHHHHHHHHHH-H-THTCCEEEEEESSG
T ss_pred             CCcHHHHHHHHHHHhh-c-CCCCCeEEEEECCH
Confidence               3446665511000 0 36788999999999

>PRK13768 GTPase; Provisional

Probab=96.67  E-value=0.003  Score=59.30  Aligned_cols=35  Identities=26%  Similarity=0.465  Sum_probs=27.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDT  305 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~  305 (369)
                      |+.++++.|++||||||++..++..+     .+.+++.|.
T Consensus         1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~   40 (253)
T PRK13768          1 MMYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP   40 (253)
T ss_pred             CcEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence            56789999999999999988887643     455666654

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=96.66  E-value=0.0025  Score=51.74  Aligned_cols=33  Identities=15%  Similarity=0.215  Sum_probs=26.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG  307 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~  307 (369)
                      .++.+.|++||||||+++.+.  .+...+..|++.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~--~G~i~~~g~di~   48 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI--KRKHRLVGDDNV   48 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh--CCeEEEeeEeHH
Confidence            678999999999999999987  344566666643

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>CHL00195 ycf46 Ycf46; Provisional

Probab=96.64  E-value=0.0032  Score=64.49  Aligned_cols=35  Identities=23%  Similarity=0.318  Sum_probs=29.5

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCC
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRD  304 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D  304 (369)
                      +.|+-|+|.||||||||.+|++++..++..++..|
T Consensus       257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~  291 (489)
T CHL00195        257 PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLD  291 (489)
T ss_pred             CCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEE
Confidence            44678999999999999999999999876666544

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=96.63  E-value=0.013  Score=51.55  Aligned_cols=31  Identities=23%  Similarity=0.387  Sum_probs=24.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCCc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRDT  305 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~-----~~~~~i~~D~  305 (369)
                      +++.|+||||||+++.+++..     ..+.+++.+.
T Consensus         2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~   37 (187)
T cd01124           2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE   37 (187)
T ss_pred             EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence            689999999999999987653     2566777643

A related protein is found in archaea.

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=96.61  E-value=0.034  Score=48.35  Aligned_cols=76  Identities=14%  Similarity=0.236  Sum_probs=51.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC----CcEEEeCCcchh--------------------HHHHHHHHHHHHhCCCcEEE
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL----NYTTVNRDTLGS--------------------WQKCVSVMKAALDSGLSVVV  328 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~----~~~~i~~D~~~~--------------------~~~~~~~~~~~l~~g~~vIi  328 (369)
                      .++.+.|++|||||||.+.++-..    |-+.++...+..                    .++....++..+..-..+++
T Consensus        27 e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~~~p~illl  106 (163)
T cd03216          27 EVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALARNARLLIL  106 (163)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHhcCCCEEEE
Confidence            578999999999999999998653    334443322110                    12334556666677778889


Q ss_pred             eCCC--CCHHHHHHHHHHHHhc
Q psy4598         329 DNTN--PDKESRHRYIEAAKQH  348 (369)
Q Consensus       329 D~tn--~~~~~r~~~~~la~~~  348 (369)
                      |-+.  ++...+..+.++.++.
T Consensus       107 DEP~~~LD~~~~~~l~~~l~~~  128 (163)
T cd03216         107 DEPTAALTPAEVERLFKVIRRL  128 (163)
T ss_pred             ECCCcCCCHHHHHHHHHHHHHH
Confidence            9654  6888888887766543

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.60  E-value=0.0017  Score=57.42  Aligned_cols=29  Identities=17%  Similarity=0.414  Sum_probs=24.4

Q ss_pred             cccccEEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         268 KAALDSVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       268 ~~~~~~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      +..++.++.++|++||||||+.+.+...+
T Consensus         2 ~~~~~~ii~ivG~sgsGKTTLi~~li~~l   30 (173)
T PRK10751          2 NKTMIPLLAIAAWSGTGKTTLLKKLIPAL   30 (173)
T ss_pred             CCCCceEEEEECCCCChHHHHHHHHHHHH
Confidence            34466799999999999999999998654

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=96.60  E-value=0.014  Score=62.47  Aligned_cols=36  Identities=19%  Similarity=0.397  Sum_probs=29.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-------CcEEEeCCcch
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-------NYTTVNRDTLG  307 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-------~~~~i~~D~~~  307 (369)
                      +.+|+|+||+|+||||....|+..+       .+.+++.|.++
T Consensus       185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R  227 (767)
T PRK14723        185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR  227 (767)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence            4799999999999999999988543       35678888875

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=96.60  E-value=0.012  Score=57.28  Aligned_cols=33  Identities=15%  Similarity=0.334  Sum_probs=25.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC----CcEEEeCCc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL----NYTTVNRDT  305 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~----~~~~i~~D~  305 (369)
                      .+++|.||+||||||+-+.++--.    |-..|+...
T Consensus        30 ef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~   66 (338)
T COG3839          30 EFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRD   66 (338)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEE
Confidence            588999999999999999998542    445555443

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=96.59  E-value=0.012  Score=57.43  Aligned_cols=37  Identities=22%  Similarity=0.281  Sum_probs=28.9

Q ss_pred             ccccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCc
Q psy4598         269 AALDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDT  305 (369)
Q Consensus       269 ~~~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~  305 (369)
                      ...+.+|-++|+|||||||+...|...+     ++.+|+.|.
T Consensus        53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp   94 (332)
T PRK09435         53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDP   94 (332)
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCC
Confidence            3456799999999999999999886643     466676665

>PRK12323 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.59  E-value=0.013  Score=61.72  Aligned_cols=91  Identities=13%  Similarity=0.162  Sum_probs=54.8

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEE------Ee------------------CCcc----------hhHHHHHHHH
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTT------VN------------------RDTL----------GSWQKCVSVM  316 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~------i~------------------~D~~----------~~~~~~~~~~  316 (369)
                      .+..+||+|++|+||||+|+.|++.+++..      ++                  .|.+          ...+.+.+.+
T Consensus        37 LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~  116 (700)
T PRK12323         37 LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKA  116 (700)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHH
Confidence            356789999999999999999999876511      00                  0111          1112222222


Q ss_pred             HHHHh--CCCcEEEeCC-CCCHHHHHHHHHHHHhcCCeEEEEEEeCCH
Q psy4598         317 KAALD--SGLSVVVDNT-NPDKESRHRYIEAAKQHGVRCIAVHMNISK  361 (369)
Q Consensus       317 ~~~l~--~g~~vIiD~t-n~~~~~r~~~~~la~~~~~~v~~v~l~~~~  361 (369)
                      ...-.  ..+.+|||-. .++....+.+++...+..-.+.+|.+....
T Consensus       117 ~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep  164 (700)
T PRK12323        117 VYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDP  164 (700)
T ss_pred             HhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCCh
Confidence            21111  2347788854 456777778888777755556666665544

>PRK12377 putative replication protein; Provisional

Probab=96.58  E-value=0.0082  Score=56.17  Aligned_cols=73  Identities=14%  Similarity=0.135  Sum_probs=44.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch-hHHH------HHHHHHHHHhCCCcEEEeCCC---CCHHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG-SWQK------CVSVMKAALDSGLSVVVDNTN---PDKES  337 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~-~~~~------~~~~~~~~l~~g~~vIiD~tn---~~~~~  337 (369)
                      .-++|.|+||+|||++|.+++..+     .+.+++..++. ....      ......+.+..-..+|||..+   .+.+.
T Consensus       102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~~s~~~  181 (248)
T PRK12377        102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRETKNE  181 (248)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCCHHH
Confidence            357999999999999999998764     34566654432 1111      112334445555678888773   34455


Q ss_pred             HHHHHHHH
Q psy4598         338 RHRYIEAA  345 (369)
Q Consensus       338 r~~~~~la  345 (369)
                      ...+..+.
T Consensus       182 ~~~l~~ii  189 (248)
T PRK12377        182 QVVLNQII  189 (248)
T ss_pred             HHHHHHHH
Confidence            55554444

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.58  E-value=0.031  Score=49.53  Aligned_cols=75  Identities=20%  Similarity=0.285  Sum_probs=47.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCc--------------------------ch--------hHHHHHHHHHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDT--------------------------LG--------SWQKCVSVMKA  318 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~--------------------------~~--------~~~~~~~~~~~  318 (369)
                      .++.+.|++||||||+.+.+....+-+.+....                          +.        ..++....++.
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~~q~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~lara  101 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFIDQLQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASE  101 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEEhHHHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHH
Confidence            578999999999999999986332222222110                          00        01233455666


Q ss_pred             HHhC--CCcEEEeCC--CCCHHHHHHHHHHHHh
Q psy4598         319 ALDS--GLSVVVDNT--NPDKESRHRYIEAAKQ  347 (369)
Q Consensus       319 ~l~~--g~~vIiD~t--n~~~~~r~~~~~la~~  347 (369)
                      .+..  ...+++|-+  +++...+..+.+..++
T Consensus       102 l~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~  134 (176)
T cd03238         102 LFSEPPGTLFILDEPSTGLHQQDINQLLEVIKG  134 (176)
T ss_pred             HhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            6666  678889854  5678888877766554

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK10187 trehalose-6-phosphate phosphatase; Provisional

Probab=96.58  E-value=0.0071  Score=57.14  Aligned_cols=48  Identities=25%  Similarity=0.235  Sum_probs=37.5

Q ss_pred             ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHH-CCcEEEEEecC
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLD-DGYKLVIFTNQ   79 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~-~G~~i~i~TNq   79 (369)
                      ..+++||+||||....      ..+++-. +.|.+.++|++|.+ .|..++|+|-.
T Consensus        14 ~~li~~D~DGTLl~~~------~~p~~~~-i~~~~~~~L~~L~~~~g~~v~i~SGR   62 (266)
T PRK10187         14 NYAWFFDLDGTLAEIK------PHPDQVV-VPDNILQGLQLLATANDGALALISGR   62 (266)
T ss_pred             CEEEEEecCCCCCCCC------CCccccc-CCHHHHHHHHHHHhCCCCcEEEEeCC
Confidence            4688999999998532      2333333 57999999999998 79999999973

>PRK14961 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.58  E-value=0.02  Score=56.64  Aligned_cols=27  Identities=26%  Similarity=0.544  Sum_probs=23.8

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCC
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLN  297 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~  297 (369)
                      .+..+++.||||+||||+|+.+++.++
T Consensus        37 ~~h~~L~~Gp~G~GKTtla~~la~~l~   63 (363)
T PRK14961         37 IHHAWLLSGTRGVGKTTIARLLAKSLN   63 (363)
T ss_pred             CCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence            456789999999999999999998764

>PRK07003 DNA polymerase III subunits gamma and tau; Validated

Probab=96.57  E-value=0.018  Score=61.49  Aligned_cols=91  Identities=13%  Similarity=0.214  Sum_probs=54.2

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcE------------------------EEeCCcc--hhHHHHHHHHHHHH----
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYT------------------------TVNRDTL--GSWQKCVSVMKAAL----  320 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~------------------------~i~~D~~--~~~~~~~~~~~~~l----  320 (369)
                      .+..+||+|++|+||||+++.|++.+++.                        ++..|..  +..+.+.+.+....    
T Consensus        37 L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~  116 (830)
T PRK07003         37 LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPV  116 (830)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccc
Confidence            35678999999999999999999876542                        1211111  11112222222211    


Q ss_pred             -hCCCcEEEeCC-CCCHHHHHHHHHHHHhcCCeEEEEEEeCCH
Q psy4598         321 -DSGLSVVVDNT-NPDKESRHRYIEAAKQHGVRCIAVHMNISK  361 (369)
Q Consensus       321 -~~g~~vIiD~t-n~~~~~r~~~~~la~~~~~~v~~v~l~~~~  361 (369)
                       ...+.+|||.. .++....+.+++...+..-.+++|......
T Consensus       117 ~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~  159 (830)
T PRK07003        117 DARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDP  159 (830)
T ss_pred             cCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECCh
Confidence             12457788864 456666777888877765556666655443

>PRK08116 hypothetical protein; Validated

Probab=96.57  E-value=0.012  Score=55.72  Aligned_cols=89  Identities=20%  Similarity=0.241  Sum_probs=49.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcc-hhHHH--------HHHHHHHHHhCCCcEEEeCCC---CCHH
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTL-GSWQK--------CVSVMKAALDSGLSVVVDNTN---PDKE  336 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~-~~~~~--------~~~~~~~~l~~g~~vIiD~tn---~~~~  336 (369)
                      -++|.|+||+|||+||.+++..+     .+.+++...+ ..+..        -...+.+.+.....+|||...   .+.+
T Consensus       116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~t~~  195 (268)
T PRK08116        116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERDTEW  195 (268)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCCCCCHH
Confidence            47999999999999999998753     4556665443 11111        111233444444567778763   3445


Q ss_pred             HHHHHHHHHHh---cCCeEEEEEEeCCHHH
Q psy4598         337 SRHRYIEAAKQ---HGVRCIAVHMNISKEH  363 (369)
Q Consensus       337 ~r~~~~~la~~---~~~~v~~v~l~~~~e~  363 (369)
                      ....+..+...   .+.+ .++--+.+++.
T Consensus       196 ~~~~l~~iin~r~~~~~~-~IiTsN~~~~e  224 (268)
T PRK08116        196 AREKVYNIIDSRYRKGLP-TIVTTNLSLEE  224 (268)
T ss_pred             HHHHHHHHHHHHHHCCCC-EEEECCCCHHH
Confidence            55555444332   2333 34444555544

>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5)

Probab=96.56  E-value=0.0017  Score=52.63  Aligned_cols=22  Identities=32%  Similarity=0.536  Sum_probs=19.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhccC
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~  296 (369)
                      |+|.|+||+|||++++.|++.+
T Consensus         1 I~i~G~~G~GKS~l~~~l~~~l   22 (107)
T PF00910_consen    1 IWIYGPPGIGKSTLAKELAKDL   22 (107)
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            5799999999999999988654

All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity

>PRK07994 DNA polymerase III subunits gamma and tau; Validated

Probab=96.55  E-value=0.015  Score=61.38  Aligned_cols=91  Identities=12%  Similarity=0.153  Sum_probs=56.7

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcE--------------------------EEeCCc-c--hhHHHHHHHHHHHHh
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYT--------------------------TVNRDT-L--GSWQKCVSVMKAALD  321 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~--------------------------~i~~D~-~--~~~~~~~~~~~~~l~  321 (369)
                      .+..++|.|++|+||||+|+.+++.+++.                          .++... .  ...+.+.+.+...-.
T Consensus        37 l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~  116 (647)
T PRK07994         37 LHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPA  116 (647)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhh
Confidence            45678999999999999999999987652                          122211 1  112333333322212


Q ss_pred             --CCCcEEEeCC-CCCHHHHHHHHHHHHhcCCeEEEEEEeCCH
Q psy4598         322 --SGLSVVVDNT-NPDKESRHRYIEAAKQHGVRCIAVHMNISK  361 (369)
Q Consensus       322 --~g~~vIiD~t-n~~~~~r~~~~~la~~~~~~v~~v~l~~~~  361 (369)
                        ..+.+|||.. .++......+++...+-.-.+.++......
T Consensus       117 ~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~  159 (647)
T PRK07994        117 RGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDP  159 (647)
T ss_pred             cCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCc
Confidence              2347788854 457778888888888765556666654443

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=96.54  E-value=0.03  Score=50.04  Aligned_cols=26  Identities=19%  Similarity=0.415  Sum_probs=22.6

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      +.-.+++++|++|||||||.+.+...
T Consensus        26 ~~Gef~fl~GpSGAGKSTllkLi~~~   51 (223)
T COG2884          26 PKGEFVFLTGPSGAGKSTLLKLIYGE   51 (223)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhh
Confidence            34468999999999999999999875

>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional

Probab=96.53  E-value=0.0018  Score=64.68  Aligned_cols=34  Identities=24%  Similarity=0.385  Sum_probs=28.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDT  305 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~  305 (369)
                      |.-|+|+||||+|||++|+.|++.++..++..|.
T Consensus        50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~   83 (443)
T PRK05201         50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA   83 (443)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCChheeecc
Confidence            4678999999999999999999998766666554

>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family

Probab=96.53  E-value=0.02  Score=53.88  Aligned_cols=33  Identities=24%  Similarity=0.260  Sum_probs=26.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRD  304 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~-----~~~~~i~~D  304 (369)
                      ..++++.|+||||||+++.+++..     ..+.+++.+
T Consensus        36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E   73 (259)
T TIGR03878        36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE   73 (259)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence            368999999999999999998653     246667654

This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=96.52  E-value=0.044  Score=47.93  Aligned_cols=91  Identities=16%  Similarity=0.239  Sum_probs=56.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC----CcEEEeCCcch------------------------h--------HHHHHHHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL----NYTTVNRDTLG------------------------S--------WQKCVSVM  316 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~----~~~~i~~D~~~------------------------~--------~~~~~~~~  316 (369)
                      .++.+.|++||||||+.+.++-..    |-..++...+.                        .        .++....+
T Consensus        29 ~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~t~~e~lLS~G~~~rl~la  108 (171)
T cd03228          29 EKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENILSGGQRQRIAIA  108 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCchhccchHHHHhhCHHHHHHHHHH
Confidence            578999999999999999998653    33334332210                        0        01223445


Q ss_pred             HHHHhCCCcEEEeCC--CCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHH
Q psy4598         317 KAALDSGLSVVVDNT--NPDKESRHRYIEAAKQHGVRCIAVHMNISKEH  363 (369)
Q Consensus       317 ~~~l~~g~~vIiD~t--n~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~  363 (369)
                      +..+..-..+++|-+  .++...+..+.++.++..-...++...=+.+.
T Consensus       109 ~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~  157 (171)
T cd03228         109 RALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLST  157 (171)
T ss_pred             HHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHH
Confidence            556666778889965  45788888887776654323334444433333

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>KOG3078|consensus

Probab=96.52  E-value=0.0081  Score=55.34  Aligned_cols=92  Identities=12%  Similarity=0.209  Sum_probs=61.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hhH--------H---------------HHHHHHHHHHhC---CC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GSW--------Q---------------KCVSVMKAALDS---GL  324 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~~--------~---------------~~~~~~~~~l~~---g~  324 (369)
                      ..-.++.|+|||||+|+|..+.+.+++.||++-++ +..        .               .......+.+..   ..
T Consensus        15 ~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~telg~~~~~~~~~g~lvpDeiv~~~l~~~l~~~~~~~   94 (235)
T KOG3078|consen   15 GVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGTELGKEAKEAIDKGKLVPDEVVVRLLEKRLENPRCQK   94 (235)
T ss_pred             ceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccCcHHHHHHHHHHhcCcCcHHHHHHHHHhhcccccccc
Confidence            35578999999999999999999999998876443 321        0               011122222333   35


Q ss_pred             cEEEeCCCCCHHHHHHHHHHHHhcCC-eEEEEEEeCCHHHHHHH
Q psy4598         325 SVVVDNTNPDKESRHRYIEAAKQHGV-RCIAVHMNISKEHAKHN  367 (369)
Q Consensus       325 ~vIiD~tn~~~~~r~~~~~la~~~~~-~v~~v~l~~~~e~~~~R  367 (369)
                      .+++|..-.+...-..    +..+++ .-.++.+.+|.+.+.+|
T Consensus        95 ~~ildg~Prt~~qa~~----l~~~~~~~d~Vi~l~vp~~~L~~r  134 (235)
T KOG3078|consen   95 GFILDGFPRTVQQAEE----LLDRIAQIDLVINLKVPEEVLVDR  134 (235)
T ss_pred             ccccCCCCcchHHHHH----HHHccCCcceEEEecCCHHHHHHH
Confidence            7888877655443333    344444 44689999999998886

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=96.52  E-value=0.033  Score=53.48  Aligned_cols=34  Identities=24%  Similarity=0.473  Sum_probs=26.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC----CcEEEeCCcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL----NYTTVNRDTL  306 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~----~~~~i~~D~~  306 (369)
                      .+.+++|++||||||+.+.+-+..    |-+.++..++
T Consensus        55 eIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di   92 (386)
T COG4175          55 EIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDI   92 (386)
T ss_pred             eEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcch
Confidence            578999999999999999987753    5566666554

>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family

Probab=96.52  E-value=0.022  Score=52.22  Aligned_cols=34  Identities=18%  Similarity=0.268  Sum_probs=25.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCCc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRDT  305 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~-----~~~~~i~~D~  305 (369)
                      ..++++.|+|||||||++..++..     .++.+++.+.
T Consensus        20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~   58 (229)
T TIGR03881        20 GFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE   58 (229)
T ss_pred             CeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC
Confidence            368999999999999999876532     2466777654

Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=96.51  E-value=0.038  Score=48.18  Aligned_cols=82  Identities=22%  Similarity=0.291  Sum_probs=55.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC----Cc---------EEEeCCcc------h-------------hHHHHHHHHHHHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL----NY---------TTVNRDTL------G-------------SWQKCVSVMKAAL  320 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~----~~---------~~i~~D~~------~-------------~~~~~~~~~~~~l  320 (369)
                      .++.++|++||||||+.+.++-..    |.         .++.++..      .             ..++....++..+
T Consensus        28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~LS~G~~~rv~laral~  107 (166)
T cd03223          28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLPLGTLREQLIYPWDDVLSGGEQQRLAFARLLL  107 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccccccHHHHhhccCCCCCCHHHHHHHHHHHHHH
Confidence            578999999999999999998753    22         23333321      0             0123345566666


Q ss_pred             hCCCcEEEeCC--CCCHHHHHHHHHHHHhcCCeEEE
Q psy4598         321 DSGLSVVVDNT--NPDKESRHRYIEAAKQHGVRCIA  354 (369)
Q Consensus       321 ~~g~~vIiD~t--n~~~~~r~~~~~la~~~~~~v~~  354 (369)
                      .....+++|-+  +++...+..+.++.++.+..+.+
T Consensus       108 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiii  143 (166)
T cd03223         108 HKPKFVFLDEATSALDEESEDRLYQLLKELGITVIS  143 (166)
T ss_pred             cCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEE
Confidence            77778889964  56888888888888877643333

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>TIGR02012 tigrfam_recA protein RecA

Probab=96.51  E-value=0.017  Score=56.11  Aligned_cols=34  Identities=12%  Similarity=0.305  Sum_probs=25.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDT  305 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~  305 (369)
                      -.++.+.|+||||||||+..++...     .+.+|+...
T Consensus        55 G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~   93 (321)
T TIGR02012        55 GRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEH   93 (321)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccc
Confidence            3688999999999999988876532     456776543

This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.

>PRK06645 DNA polymerase III subunits gamma and tau; Validated

Probab=96.50  E-value=0.015  Score=59.92  Aligned_cols=88  Identities=11%  Similarity=0.190  Sum_probs=52.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEe-----------------------CCcc----------hhHHHHHHHHHH
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVN-----------------------RDTL----------GSWQKCVSVMKA  318 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~-----------------------~D~~----------~~~~~~~~~~~~  318 (369)
                      +..++|+|+||+||||+|+.+++.+++....                       .|.+          ...+.+.+.+..
T Consensus        43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~  122 (507)
T PRK06645         43 AGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEY  122 (507)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHh
Confidence            4678999999999999999999987653210                       1111          012222222222


Q ss_pred             H--HhCCCcEEEeCCC-CCHHHHHHHHHHHHhcCCeEEEEEEeC
Q psy4598         319 A--LDSGLSVVVDNTN-PDKESRHRYIEAAKQHGVRCIAVHMNI  359 (369)
Q Consensus       319 ~--l~~g~~vIiD~tn-~~~~~r~~~~~la~~~~~~v~~v~l~~  359 (369)
                      .  ....+.+|||... ++......+++...+..-.+.+|....
T Consensus       123 ~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTt  166 (507)
T PRK06645        123 KPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATT  166 (507)
T ss_pred             ccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeC
Confidence            1  1234578888754 355566667766666555555555543

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=96.50  E-value=0.011  Score=53.19  Aligned_cols=81  Identities=19%  Similarity=0.279  Sum_probs=44.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchhHHHHHHHH-------HHH--------------HhCCCcE
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGSWQKCVSVM-------KAA--------------LDSGLSV  326 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~~~~~~~~~-------~~~--------------l~~g~~v  326 (369)
                      .++++.|+|||||||+.+.+.+.+     .+..+.... +....+.+.+       ...              +.....+
T Consensus        19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~-~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vl   97 (196)
T PF13604_consen   19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTN-KAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVL   97 (196)
T ss_dssp             SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSH-HHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEE
T ss_pred             eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcH-HHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEE
Confidence            578899999999999999887643     233333322 1111111110       000              2334567


Q ss_pred             EEe-CCCCCHHHHHHHHHHHHhcCCeEEE
Q psy4598         327 VVD-NTNPDKESRHRYIEAAKQHGVRCIA  354 (369)
Q Consensus       327 IiD-~tn~~~~~r~~~~~la~~~~~~v~~  354 (369)
                      ||| +...+......+...+...+..+++
T Consensus        98 iVDEasmv~~~~~~~ll~~~~~~~~klil  126 (196)
T PF13604_consen   98 IVDEASMVDSRQLARLLRLAKKSGAKLIL  126 (196)
T ss_dssp             EESSGGG-BHHHHHHHHHHS-T-T-EEEE
T ss_pred             EEecccccCHHHHHHHHHHHHhcCCEEEE
Confidence            787 4555777777778877776765443

>PRK08727 hypothetical protein; Validated

Probab=96.50  E-value=0.014  Score=53.94  Aligned_cols=57  Identities=16%  Similarity=0.178  Sum_probs=34.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchhHHHHHHHHHHHHhCCCcEEEeCCC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTN  332 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~~~~~~~~~~~~l~~g~~vIiD~tn  332 (369)
                      ..++|.|++|||||+++.+++...     .+.+++.+.+.   .....+.+.+..-..+|||...
T Consensus        42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~---~~~~~~~~~l~~~dlLiIDDi~  103 (233)
T PRK08727         42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA---GRLRDALEALEGRSLVALDGLE  103 (233)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh---hhHHHHHHHHhcCCEEEEeCcc
Confidence            348999999999999999986542     34566654422   1111222333444467777643

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.48  E-value=0.018  Score=58.09  Aligned_cols=36  Identities=19%  Similarity=0.362  Sum_probs=28.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhcc-------CCcEEEeCCcch
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKP-------LNYTTVNRDTLG  307 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~-------~~~~~i~~D~~~  307 (369)
                      ..+|+|+||+|+||||++..|+..       ..+.+|+.|.++
T Consensus       221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r  263 (424)
T PRK05703        221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYR  263 (424)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccH
Confidence            358999999999999988777542       247889999864

>PRK14958 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.47  E-value=0.019  Score=59.38  Aligned_cols=91  Identities=13%  Similarity=0.153  Sum_probs=55.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcE--------------------------EEeCC-cc--hhHHHHHHHHHHHHh
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYT--------------------------TVNRD-TL--GSWQKCVSVMKAALD  321 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~--------------------------~i~~D-~~--~~~~~~~~~~~~~l~  321 (369)
                      .+..+++.|+||+||||+|+.+++.+++.                          .++.. ..  ...+.+.+.+...-.
T Consensus        37 l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~  116 (509)
T PRK14958         37 LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPT  116 (509)
T ss_pred             CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccc
Confidence            45678999999999999999999977542                          11211 00  112222222222222


Q ss_pred             --CCCcEEEeCCC-CCHHHHHHHHHHHHhcCCeEEEEEEeCCH
Q psy4598         322 --SGLSVVVDNTN-PDKESRHRYIEAAKQHGVRCIAVHMNISK  361 (369)
Q Consensus       322 --~g~~vIiD~tn-~~~~~r~~~~~la~~~~~~v~~v~l~~~~  361 (369)
                        ..+.+|||... ++......+++...+..-.+.+|....+.
T Consensus       117 ~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~  159 (509)
T PRK14958        117 KGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDH  159 (509)
T ss_pred             cCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECCh
Confidence              23477888654 46777777888777765556666665543

>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional

Probab=96.47  E-value=0.0034  Score=66.88  Aligned_cols=35  Identities=23%  Similarity=0.396  Sum_probs=32.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      ...|.+.||+||||||+++.|++++++.+++++.+
T Consensus       442 ~~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~  476 (661)
T PRK11860        442 VPVICIDGPTASGKGTVAARVAEALGYHYLDSGAL  476 (661)
T ss_pred             cceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHh
Confidence            45789999999999999999999999999999876

>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical

Probab=96.46  E-value=0.02  Score=52.37  Aligned_cols=35  Identities=26%  Similarity=0.390  Sum_probs=26.8

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhcc------CCcEEEeCCc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKP------LNYTTVNRDT  305 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~------~~~~~i~~D~  305 (369)
                      ...++++.|+||||||+++.+++..      .++.+++.+.
T Consensus        18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee   58 (226)
T PF06745_consen   18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE   58 (226)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred             CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence            3468999999999999999986532      3577888765

More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....

>COG3769 Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=96.46  E-value=0.0083  Score=54.41  Aligned_cols=60  Identities=28%  Similarity=0.421  Sum_probs=44.5

Q ss_pred             CCCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHH
Q psy4598          22 CNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIK  101 (369)
Q Consensus        22 ~~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~  101 (369)
                      .+..+++|.|+||||+.. +        .||..    +.+.|.+|++.||.|+.+|.++            ...+..+-+
T Consensus         4 ~~~~~lIFtDlD~TLl~~-~--------ye~~p----A~pv~~el~d~G~~Vi~~SSKT------------~aE~~~l~~   58 (274)
T COG3769           4 IQMPLLIFTDLDGTLLPH-S--------YEWQP----AAPVLLELKDAGVPVILCSSKT------------RAEMLYLQK   58 (274)
T ss_pred             cccceEEEEcccCcccCC-C--------CCCCc----cchHHHHHHHcCCeEEEeccch------------HHHHHHHHH
Confidence            356788999999999962 2        34443    6778999999999999999853            223455667


Q ss_pred             HcCCC
Q psy4598         102 SLNVP  106 (369)
Q Consensus       102 ~l~i~  106 (369)
                      .+|++
T Consensus        59 ~l~v~   63 (274)
T COG3769          59 SLGVQ   63 (274)
T ss_pred             hcCCC
Confidence            78774

>KOG0739|consensus

Probab=96.46  E-value=0.0054  Score=58.20  Aligned_cols=51  Identities=22%  Similarity=0.339  Sum_probs=36.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEe---CCcchhH----HHHHHHHHHHHhCCC
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVN---RDTLGSW----QKCVSVMKAALDSGL  324 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~---~D~~~~~----~~~~~~~~~~l~~g~  324 (369)
                      -|+|.||||+|||+||++.+...+..+++   +|.+..|    +++.+.+-+..++.+
T Consensus       168 giLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemARe~k  225 (439)
T KOG0739|consen  168 GILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMARENK  225 (439)
T ss_pred             eEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHHhcC
Confidence            47999999999999999999987654443   4444333    556666656555555

>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]

Probab=96.46  E-value=0.021  Score=53.55  Aligned_cols=62  Identities=18%  Similarity=0.236  Sum_probs=42.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCCcch-----hHHHHHHHHHHHHhCCCcEEEeCCC
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRDTLG-----SWQKCVSVMKAALDSGLSVVVDNTN  332 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~-----~~~~~i~~D~~~-----~~~~~~~~~~~~l~~g~~vIiD~tn  332 (369)
                      .-.++++.|+||||||+|+.++...     .++.+++.+.-.     .+....-......+.+...++|...
T Consensus        22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~~~~l~~~~~~~g~d~~~~~~~g~l~i~d~~~   93 (260)
T COG0467          22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEESPEELLENARSFGWDLEVYIEKGKLAILDAFL   93 (260)
T ss_pred             CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCCHHHHHHHHHHcCCCHHHHhhcCCEEEEEccc
Confidence            3468999999999999999998764     257888887742     1111112223566778888887654

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.46  E-value=0.016  Score=56.39  Aligned_cols=79  Identities=14%  Similarity=0.232  Sum_probs=50.2

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCC--c-chhH----HHHHHHHHHHHhCCCc-EE-E------------
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRD--T-LGSW----QKCVSVMKAALDSGLS-VV-V------------  328 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D--~-~~~~----~~~~~~~~~~l~~g~~-vI-i------------  328 (369)
                      ..|+=|+|.||||+|||-+|++.+.+.++.+|..-  . +..|    .++.+.+-+.++...+ +| +            
T Consensus       183 ~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d  262 (406)
T COG1222         183 DPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFD  262 (406)
T ss_pred             CCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhccccc
Confidence            34666899999999999999999999988776532  2 2222    3344444444444433 33 2            


Q ss_pred             eCCCCCHHHHHHHHHHHHhc
Q psy4598         329 DNTNPDKESRHRYIEAAKQH  348 (369)
Q Consensus       329 D~tn~~~~~r~~~~~la~~~  348 (369)
                      +.|..+++-.+.++++..+.
T Consensus       263 ~~t~gDrEVQRTmleLL~ql  282 (406)
T COG1222         263 SGTSGDREVQRTMLELLNQL  282 (406)
T ss_pred             CCCCchHHHHHHHHHHHHhc
Confidence            23455666667777776554

>PRK09361 radB DNA repair and recombination protein RadB; Provisional

Probab=96.45  E-value=0.018  Score=52.63  Aligned_cols=34  Identities=15%  Similarity=0.280  Sum_probs=28.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCCc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRDT  305 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~-----~~~~~i~~D~  305 (369)
                      -.++++.|+||||||+++.+++..     .++.+++.+.
T Consensus        23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~   61 (225)
T PRK09361         23 GTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEG   61 (225)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence            468999999999999999999853     3688898884

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=96.45  E-value=0.013  Score=59.73  Aligned_cols=79  Identities=16%  Similarity=0.328  Sum_probs=49.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC----------CcEEEeCCcch-h-------HHHHHHHHHHHHhCCCcEEEeCCCC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL----------NYTTVNRDTLG-S-------WQKCVSVMKAALDSGLSVVVDNTNP  333 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~----------~~~~i~~D~~~-~-------~~~~~~~~~~~l~~g~~vIiD~tn~  333 (369)
                      |-++.++||||+|||||.+.|.+++          ++.+++.-.-+ +       ...+...+.  ++.=....||+.+.
T Consensus        69 PfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~Dl~~miDvaK--IaDLVlLlIdgnfG  146 (1077)
T COG5192          69 PFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPSDLHQMIDVAK--IADLVLLLIDGNFG  146 (1077)
T ss_pred             CeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChHHHHHHHhHHH--hhheeEEEeccccC
Confidence            4455599999999999999999874          23333333221 1       112222222  11122345788777


Q ss_pred             CHHHHHHHHHHHHhcCCeE
Q psy4598         334 DKESRHRYIEAAKQHGVRC  352 (369)
Q Consensus       334 ~~~~r~~~~~la~~~~~~v  352 (369)
                      -.-.-..+++++..||.+-
T Consensus       147 fEMETmEFLnil~~HGmPr  165 (1077)
T COG5192         147 FEMETMEFLNILISHGMPR  165 (1077)
T ss_pred             ceehHHHHHHHHhhcCCCc
Confidence            6666788999999999863

>PRK14964 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.45  E-value=0.031  Score=57.33  Aligned_cols=89  Identities=8%  Similarity=0.084  Sum_probs=53.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCc--------------------------EEEeCCcch---hHHHHHHHHHHH--H
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNY--------------------------TTVNRDTLG---SWQKCVSVMKAA--L  320 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~--------------------------~~i~~D~~~---~~~~~~~~~~~~--l  320 (369)
                      +..++|+|++|+||||+|+.+++.+++                          ..++...-.   ..+.+.+.+...  .
T Consensus        35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~  114 (491)
T PRK14964         35 PQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPIS  114 (491)
T ss_pred             CceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhcccc
Confidence            567899999999999999999985432                          222221111   122222222221  1


Q ss_pred             hCCCcEEEeCC-CCCHHHHHHHHHHHHhcCCeEEEEEEeCC
Q psy4598         321 DSGLSVVVDNT-NPDKESRHRYIEAAKQHGVRCIAVHMNIS  360 (369)
Q Consensus       321 ~~g~~vIiD~t-n~~~~~r~~~~~la~~~~~~v~~v~l~~~  360 (369)
                      ...+.+|||.. .++......+++...+-.-.+.+|.....
T Consensus       115 ~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte  155 (491)
T PRK14964        115 SKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTE  155 (491)
T ss_pred             CCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCC
Confidence            34457888874 44666677777777765555555555443

>KOG0730|consensus

Probab=96.44  E-value=0.0078  Score=62.50  Aligned_cols=35  Identities=11%  Similarity=0.225  Sum_probs=28.7

Q ss_pred             ccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeC
Q psy4598         269 AALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNR  303 (369)
Q Consensus       269 ~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~  303 (369)
                      -..|+=|++-||||||||++|++++...++.+|+-
T Consensus       465 i~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsv  499 (693)
T KOG0730|consen  465 ISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSV  499 (693)
T ss_pred             CCCCceEEEECCCCcchHHHHHHHhhhhcCCeeec
Confidence            34478899999999999999999999876555543

>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]

Probab=96.43  E-value=0.026  Score=49.08  Aligned_cols=90  Identities=20%  Similarity=0.338  Sum_probs=54.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCC----c----EEEeCCcc---------h---------------hHHH------H
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLN----Y----TTVNRDTL---------G---------------SWQK------C  312 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~----~----~~i~~D~~---------~---------------~~~~------~  312 (369)
                      |-++|+++||+|+||-|+.......+.    .    .+|+...-         .               .|+.      +
T Consensus         4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsWqAhGL~Ygi   83 (192)
T COG3709           4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSWQAHGLSYGI   83 (192)
T ss_pred             CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCcccccccCHHHHHHHhhcCceeEEehhcCccccC
Confidence            458999999999999999877765531    1    12332211         0               1221      1


Q ss_pred             HHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         313 VSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       313 ~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      -..+...+..|..||+...      |..+-+.-+.+. ...+|.+.++.++..+|
T Consensus        84 p~eId~wl~~G~vvl~NgS------Ra~Lp~arrry~-~Llvv~ita~p~VLaqR  131 (192)
T COG3709          84 PAEIDLWLAAGDVVLVNGS------RAVLPQARRRYP-QLLVVCITASPEVLAQR  131 (192)
T ss_pred             chhHHHHHhCCCEEEEecc------HhhhHHHHHhhh-cceeEEEecCHHHHHHH
Confidence            2456677888977776543      222222112222 45688889999988776

>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional

Probab=96.43  E-value=0.01  Score=62.59  Aligned_cols=59  Identities=24%  Similarity=0.306  Sum_probs=44.5

Q ss_pred             CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHc
Q psy4598          24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSL  103 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l  103 (369)
                      ..|++++|+||||.....            ...+...++|++|+++|+.++++|-.+            ...+..+++.+
T Consensus       415 ~~KLIfsDLDGTLLd~d~------------~i~~~t~eAL~~L~ekGI~~VIATGRs------------~~~i~~l~~~L  470 (694)
T PRK14502        415 FKKIVYTDLDGTLLNPLT------------YSYSTALDALRLLKDKELPLVFCSAKT------------MGEQDLYRNEL  470 (694)
T ss_pred             eeeEEEEECcCCCcCCCC------------ccCHHHHHHHHHHHHcCCeEEEEeCCC------------HHHHHHHHHHc
Confidence            358999999999997542            135667899999999999999999632            12356667777


Q ss_pred             CCC
Q psy4598         104 NVP  106 (369)
Q Consensus       104 ~i~  106 (369)
                      ++.
T Consensus       471 gl~  473 (694)
T PRK14502        471 GIK  473 (694)
T ss_pred             CCC
Confidence            763

>PRK14952 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.42  E-value=0.032  Score=58.49  Aligned_cols=91  Identities=13%  Similarity=0.156  Sum_probs=57.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEE---------------E------eCCcc----------hhHHHHHHHHHHH
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTT---------------V------NRDTL----------GSWQKCVSVMKAA  319 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~---------------i------~~D~~----------~~~~~~~~~~~~~  319 (369)
                      .+..++|.|++|+||||+|+.+++.+++..               +      +.|.+          ...+.+.+.+...
T Consensus        34 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~  113 (584)
T PRK14952         34 INHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYA  113 (584)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhh
Confidence            456789999999999999999998765421               0      01111          1122222233222


Q ss_pred             --HhCCCcEEEeCC-CCCHHHHHHHHHHHHhcCCeEEEEEEeCCH
Q psy4598         320 --LDSGLSVVVDNT-NPDKESRHRYIEAAKQHGVRCIAVHMNISK  361 (369)
Q Consensus       320 --l~~g~~vIiD~t-n~~~~~r~~~~~la~~~~~~v~~v~l~~~~  361 (369)
                        ....+.+|||.. .++......+++...+..-.+++|.+....
T Consensus       114 P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~  158 (584)
T PRK14952        114 PAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEP  158 (584)
T ss_pred             hhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCCh
Confidence              234567888865 457777788888888766666666665443

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=96.42  E-value=0.0028  Score=53.50  Aligned_cols=26  Identities=31%  Similarity=0.620  Sum_probs=23.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNY  298 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~  298 (369)
                      .+|+|.|..||||||+++.+++.++.
T Consensus        23 ~~i~l~G~lGaGKTtl~~~l~~~lg~   48 (133)
T TIGR00150        23 TVVLLKGDLGAGKTTLVQGLLQGLGI   48 (133)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            58999999999999999999998653

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>KOG0733|consensus

Probab=96.42  E-value=0.0094  Score=61.50  Aligned_cols=33  Identities=18%  Similarity=0.306  Sum_probs=28.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRD  304 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D  304 (369)
                      |+=|+|.||||||||.||++++.++++.+++-.
T Consensus       223 prGvLlHGPPGCGKT~lA~AiAgel~vPf~~is  255 (802)
T KOG0733|consen  223 PRGVLLHGPPGCGKTSLANAIAGELGVPFLSIS  255 (802)
T ss_pred             CCceeeeCCCCccHHHHHHHHhhhcCCceEeec
Confidence            456799999999999999999999987776644

>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria

Probab=96.41  E-value=0.0038  Score=53.78  Aligned_cols=33  Identities=24%  Similarity=0.369  Sum_probs=26.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      .-|+|+|+||+||||+|..|.++ ++.+++-|..
T Consensus        15 ~gvLi~G~sG~GKStlal~L~~~-g~~lvaDD~v   47 (149)
T cd01918          15 IGVLITGPSGIGKSELALELIKR-GHRLVADDRV   47 (149)
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc-CCeEEECCEE
Confidence            46899999999999999999886 3456655543

It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.

>PLN02318 phosphoribulokinase/uridine kinase

Probab=96.41  E-value=0.0038  Score=64.76  Aligned_cols=39  Identities=21%  Similarity=0.309  Sum_probs=32.2

Q ss_pred             cccccEEEEEEcCCCCcHHHHHHHHhccC-CcEEEeCCcc
Q psy4598         268 KAALDSVLIMIGSQGSGKSSFVSTYLKPL-NYTTVNRDTL  306 (369)
Q Consensus       268 ~~~~~~lIll~G~pGSGKSTla~~L~~~~-~~~~i~~D~~  306 (369)
                      +...+.+|.+.|++||||||+++.|+..+ ....|+.|.+
T Consensus        61 ~~~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy  100 (656)
T PLN02318         61 KNDGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY  100 (656)
T ss_pred             cCCCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence            34456899999999999999999999876 4567887776

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=96.41  E-value=0.0027  Score=65.56  Aligned_cols=30  Identities=27%  Similarity=0.554  Sum_probs=25.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEE
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTV  301 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i  301 (369)
                      ..+++|+|||||||||..+.|++.+++.++
T Consensus        45 ~~iLlLtGP~G~GKtttv~~La~elg~~v~   74 (519)
T PF03215_consen   45 KRILLLTGPSGCGKTTTVKVLAKELGFEVQ   74 (519)
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence            459999999999999999999998764433

>PRK04328 hypothetical protein; Provisional

Probab=96.40  E-value=0.025  Score=52.83  Aligned_cols=58  Identities=21%  Similarity=0.254  Sum_probs=38.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCCcchhHHHHHHH-------HHHHHhCCCcEEEeCC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRDTLGSWQKCVSV-------MKAALDSGLSVVVDNT  331 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~-----~~~~~i~~D~~~~~~~~~~~-------~~~~l~~g~~vIiD~t  331 (369)
                      ..++++.|+||||||+++.++...     ..+.+++.+.-.  +.+.+.       ..+.++.+...++|..
T Consensus        23 gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee~~--~~i~~~~~~~g~d~~~~~~~~~l~iid~~   92 (249)
T PRK04328         23 RNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEEHP--VQVRRNMRQFGWDVRKYEEEGKFAIVDAF   92 (249)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeCCH--HHHHHHHHHcCCCHHHHhhcCCEEEEecc
Confidence            468999999999999999887653     256788876532  222222       2344566677778764

>PRK14957 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.39  E-value=0.0096  Score=61.81  Aligned_cols=91  Identities=11%  Similarity=0.128  Sum_probs=53.9

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcE--------------------------EEeC-Ccc--hhHHHHHHHHHHHH-
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYT--------------------------TVNR-DTL--GSWQKCVSVMKAAL-  320 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~--------------------------~i~~-D~~--~~~~~~~~~~~~~l-  320 (369)
                      .+..++|+|+||+||||+|+.+++.+++.                          .++. ...  ...+.+.+.+...- 
T Consensus        37 l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~  116 (546)
T PRK14957         37 VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPS  116 (546)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhh
Confidence            34678999999999999999999866431                          1111 111  11223333332221 


Q ss_pred             -hCCCcEEEeCC-CCCHHHHHHHHHHHHhcCCeEEEEEEeCCH
Q psy4598         321 -DSGLSVVVDNT-NPDKESRHRYIEAAKQHGVRCIAVHMNISK  361 (369)
Q Consensus       321 -~~g~~vIiD~t-n~~~~~r~~~~~la~~~~~~v~~v~l~~~~  361 (369)
                       ...+.+|||.. ..+......+++...+..-.+.+|......
T Consensus       117 ~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~  159 (546)
T PRK14957        117 QGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDY  159 (546)
T ss_pred             cCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECCh
Confidence             23447788864 346667777888777755455555555543

>COG3700 AphA Acid phosphatase (class B) [General function prediction only]

Probab=96.39  E-value=0.018  Score=50.61  Aligned_cols=121  Identities=18%  Similarity=0.222  Sum_probs=66.9

Q ss_pred             eEEEEecCCceeecCCCCC-----CCCCcccc-------cc----------ccccHHHHHHHHHHCCcEEEEEecCCCcC
Q psy4598          26 KIASFDLDGTLITTKSGKV-----FPVDTHDW-------KL----------LFSNIESVLKQYLDDGYKLVIFTNQGAIG   83 (369)
Q Consensus        26 k~~~fDlDgTLi~~~sg~~-----~~~~~~d~-------~~----------~~p~v~~~L~~L~~~G~~i~i~TNq~gi~   83 (369)
                      =.+.||+|.|+.-+..|..     |..+..|+       ..          ...-+.+.+..-..+|-.|+++|-.   .
T Consensus        64 i~VsFDIDDTvLFsSp~F~~Gk~~~sPgs~DyLknq~FW~~vn~g~D~~SIPKevA~qLI~MHq~RGD~i~FvTGR---t  140 (237)
T COG3700          64 IAVSFDIDDTVLFSSPGFWRGKKYFSPGSEDYLKNQVFWEKVNNGWDEFSIPKEVARQLIDMHQRRGDAIYFVTGR---T  140 (237)
T ss_pred             eeEeeccCCeeEecccccccCccccCCChHHhhcCHHHHHHHhcCCccccchHHHHHHHHHHHHhcCCeEEEEecC---C
Confidence            3578999999998866432     22233333       11          1112344444445689999999953   3


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCC
Q psy4598          84 RKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKK  161 (369)
Q Consensus        84 ~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~  161 (369)
                      +|+..  ...   ..+.+.+.|.  .-+.++.     -||+|+-+...--      -.+..-.++.||+-          
T Consensus       141 ~gk~d--~vs---k~Lak~F~i~~m~pv~f~G-----dk~k~~qy~Kt~~------i~~~~~~IhYGDSD----------  194 (237)
T COG3700         141 PGKTD--TVS---KTLAKNFHITNMNPVIFAG-----DKPKPGQYTKTQW------IQDKNIRIHYGDSD----------  194 (237)
T ss_pred             CCccc--ccc---hhHHhhcccCCCcceeecc-----CCCCcccccccHH------HHhcCceEEecCCc----------
Confidence            44321  111   1122334431  1223332     3555555543211      12334577899997          


Q ss_pred             CCCCCcccHHHHHhCCCCcc
Q psy4598         162 KKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       162 ~~d~s~~D~~~A~n~Gi~f~  181 (369)
                            .||.+|+.+|++.+
T Consensus       195 ------~Di~AAkeaG~RgI  208 (237)
T COG3700         195 ------NDITAAKEAGARGI  208 (237)
T ss_pred             ------hhhhHHHhcCccce
Confidence                  89999999999985

>PRK14969 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.39  E-value=0.03  Score=58.09  Aligned_cols=91  Identities=14%  Similarity=0.192  Sum_probs=53.9

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEE--------------------------EeCC-cc--hhHHHHHHHHHHHH-
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTT--------------------------VNRD-TL--GSWQKCVSVMKAAL-  320 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~--------------------------i~~D-~~--~~~~~~~~~~~~~l-  320 (369)
                      .+..++|+|+||+||||+|+.+++.+++..                          ++.. ..  ...+.+...+...- 
T Consensus        37 ~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~  116 (527)
T PRK14969         37 LHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPT  116 (527)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcc
Confidence            356789999999999999999998875421                          1110 00  01122222222111 


Q ss_pred             -hCCCcEEEeCC-CCCHHHHHHHHHHHHhcCCeEEEEEEeCCH
Q psy4598         321 -DSGLSVVVDNT-NPDKESRHRYIEAAKQHGVRCIAVHMNISK  361 (369)
Q Consensus       321 -~~g~~vIiD~t-n~~~~~r~~~~~la~~~~~~v~~v~l~~~~  361 (369)
                       ...+.+|||.. ..+......+++...+..-.+.+|.+..+.
T Consensus       117 ~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~  159 (527)
T PRK14969        117 RGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDP  159 (527)
T ss_pred             cCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCCh
Confidence             22347788864 456666777888877765556666665443

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.38  E-value=0.046  Score=46.95  Aligned_cols=75  Identities=21%  Similarity=0.365  Sum_probs=50.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC----CcEEEeCCcch-------------------hHHHHHHHHHHHHhCCCcEEEe
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL----NYTTVNRDTLG-------------------SWQKCVSVMKAALDSGLSVVVD  329 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~----~~~~i~~D~~~-------------------~~~~~~~~~~~~l~~g~~vIiD  329 (369)
                      .++.++|++||||||+.+.++-.+    +-..++...+.                   ..++....++..+.....+++|
T Consensus        26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~~l~~~l~~~~~i~ilD  105 (157)
T cd00267          26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRVALARALLLNPDLLLLD  105 (157)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            578999999999999999998754    23334332110                   1223345566666777788999


Q ss_pred             CC--CCCHHHHHHHHHHHHh
Q psy4598         330 NT--NPDKESRHRYIEAAKQ  347 (369)
Q Consensus       330 ~t--n~~~~~r~~~~~la~~  347 (369)
                      -+  +++...+..+.++.++
T Consensus       106 Ep~~~lD~~~~~~l~~~l~~  125 (157)
T cd00267         106 EPTSGLDPASRERLLELLRE  125 (157)
T ss_pred             CCCcCCCHHHHHHHHHHHHH
Confidence            65  4577777777666554

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=96.38  E-value=0.036  Score=51.74  Aligned_cols=34  Identities=21%  Similarity=0.437  Sum_probs=26.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC----CcEEEeCCc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL----NYTTVNRDT  305 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~----~~~~i~~D~  305 (369)
                      -.++++.|++||||||..+.+-+..    |-..|+...
T Consensus        27 gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~   64 (309)
T COG1125          27 GEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGED   64 (309)
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCee
Confidence            3688999999999999999887653    556665444

>PRK03992 proteasome-activating nucleotidase; Provisional

Probab=96.38  E-value=0.006  Score=60.87  Aligned_cols=32  Identities=19%  Similarity=0.303  Sum_probs=26.2

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccCCcEEE
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTV  301 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i  301 (369)
                      ..|.-|+|.|+||+|||++|++++...+..++
T Consensus       163 ~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i  194 (389)
T PRK03992        163 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFI  194 (389)
T ss_pred             CCCCceEEECCCCCChHHHHHHHHHHhCCCEE
Confidence            34567899999999999999999998764443

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=96.37  E-value=0.012  Score=56.70  Aligned_cols=38  Identities=24%  Similarity=0.366  Sum_probs=31.1

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG  307 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~  307 (369)
                      ..|.+|+++|..|+||||-...|+..+     .+.+-..|+||
T Consensus       137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFR  179 (340)
T COG0552         137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFR  179 (340)
T ss_pred             CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHH
Confidence            457899999999999999888887764     45666789986

>PLN02796 D-glycerate 3-kinase

Probab=96.36  E-value=0.0042  Score=60.57  Aligned_cols=37  Identities=22%  Similarity=0.298  Sum_probs=30.6

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccCC-----cEEEeCCcc
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPLN-----YTTVNRDTL  306 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~~-----~~~i~~D~~  306 (369)
                      ..|.+|-|+|++||||||+++.|...+.     ...|+.|.+
T Consensus        98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdf  139 (347)
T PLN02796         98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDF  139 (347)
T ss_pred             CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCc
Confidence            4568899999999999999999987652     567777776

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=96.35  E-value=0.047  Score=48.16  Aligned_cols=75  Identities=17%  Similarity=0.278  Sum_probs=49.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC----CcEEEeCCcch------------------------------------hHHHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL----NYTTVNRDTLG------------------------------------SWQKC  312 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~----~~~~i~~D~~~------------------------------------~~~~~  312 (369)
                      .++.+.|++||||||+.+.++...    |.+.++...+.                                    ..++.
T Consensus        26 ~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~~qr  105 (180)
T cd03214          26 EIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGERQR  105 (180)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHHHHH
Confidence            578999999999999999998753    44444432110                                    01122


Q ss_pred             HHHHHHHHhCCCcEEEeCC--CCCHHHHHHHHHHHHh
Q psy4598         313 VSVMKAALDSGLSVVVDNT--NPDKESRHRYIEAAKQ  347 (369)
Q Consensus       313 ~~~~~~~l~~g~~vIiD~t--n~~~~~r~~~~~la~~  347 (369)
                      ...++..+.....+++|-+  +++...+..+.++.++
T Consensus       106 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~  142 (180)
T cd03214         106 VLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRR  142 (180)
T ss_pred             HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            4455666667778889965  4577778777665543

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK08691 DNA polymerase III subunits gamma and tau; Validated

Probab=96.33  E-value=0.033  Score=59.12  Aligned_cols=89  Identities=12%  Similarity=0.200  Sum_probs=51.5

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccCCcE--------------------------EEeC-Ccc--hhHHHHHHHHHHH-
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPLNYT--------------------------TVNR-DTL--GSWQKCVSVMKAA-  319 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~~~~--------------------------~i~~-D~~--~~~~~~~~~~~~~-  319 (369)
                      ..+..++|+|++|+||||+|+.+++.+++.                          .++. +..  ...+.+...+... 
T Consensus        36 rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P  115 (709)
T PRK08691         36 RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAP  115 (709)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhh
Confidence            345789999999999999999999875432                          1111 001  1122223222221 


Q ss_pred             -HhCCCcEEEeCC-CCCHHHHHHHHHHHHhcCCeEEEEEEe
Q psy4598         320 -LDSGLSVVVDNT-NPDKESRHRYIEAAKQHGVRCIAVHMN  358 (369)
Q Consensus       320 -l~~g~~vIiD~t-n~~~~~r~~~~~la~~~~~~v~~v~l~  358 (369)
                       ....+.+|||.. .++......+++...+..-.+.+|...
T Consensus       116 ~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaT  156 (709)
T PRK08691        116 TAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILAT  156 (709)
T ss_pred             hhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence             233457888874 345555667777776644344444443

>TIGR03689 pup_AAA proteasome ATPase

Probab=96.33  E-value=0.0062  Score=62.65  Aligned_cols=26  Identities=19%  Similarity=0.359  Sum_probs=23.1

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      .|.-|+|.||||+|||+++++++..+
T Consensus       215 ~p~GILLyGPPGTGKT~LAKAlA~eL  240 (512)
T TIGR03689       215 PPKGVLLYGPPGCGKTLIAKAVANSL  240 (512)
T ss_pred             CCcceEEECCCCCcHHHHHHHHHHhh
Confidence            35679999999999999999999875

In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.

>cd04163 Era Era subfamily

Probab=96.32  E-value=0.051  Score=45.75  Aligned_cols=23  Identities=17%  Similarity=0.465  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      ..|.++|++||||||+...+...
T Consensus         4 ~~i~~~G~~g~GKttl~~~l~~~   26 (168)
T cd04163           4 GFVAIVGRPNVGKSTLLNALVGQ   26 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999998764

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>PRK07764 DNA polymerase III subunits gamma and tau; Validated

Probab=96.32  E-value=0.028  Score=61.22  Aligned_cols=91  Identities=10%  Similarity=0.104  Sum_probs=56.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEE----------------------------EeCCc-c--hhHHHHHHHHHH--
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTT----------------------------VNRDT-L--GSWQKCVSVMKA--  318 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~----------------------------i~~D~-~--~~~~~~~~~~~~--  318 (369)
                      +..+||.|++|+||||+|+.|++.+++..                            |+.-. .  ...+.+.+.+..  
T Consensus        37 ~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p  116 (824)
T PRK07764         37 NHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAP  116 (824)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhch
Confidence            45689999999999999999999876421                            11100 0  011122222111  


Q ss_pred             HHhCCCcEEEeC-CCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHH
Q psy4598         319 ALDSGLSVVVDN-TNPDKESRHRYIEAAKQHGVRCIAVHMNISKE  362 (369)
Q Consensus       319 ~l~~g~~vIiD~-tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e  362 (369)
                      .....+.+|||. -.++....+.+++..++..-.+++|++....+
T Consensus       117 ~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~  161 (824)
T PRK07764        117 AESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPD  161 (824)
T ss_pred             hcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChh
Confidence            113345788885 45577788888998888766677776664443

>PRK14954 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.30  E-value=0.035  Score=58.58  Aligned_cols=28  Identities=25%  Similarity=0.438  Sum_probs=24.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNY  298 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~  298 (369)
                      .+..+++.|++|+||||+|+.+++.+.+
T Consensus        37 i~ha~Lf~Gp~GvGKttlA~~lAk~L~c   64 (620)
T PRK14954         37 VGHGYIFSGLRGVGKTTAARVFAKAVNC   64 (620)
T ss_pred             CCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            3467899999999999999999988765

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=96.28  E-value=0.0038  Score=59.28  Aligned_cols=33  Identities=24%  Similarity=0.393  Sum_probs=27.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccC---CcEEEeCCcc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPL---NYTTVNRDTL  306 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~---~~~~i~~D~~  306 (369)
                      +|-++|++||||||+++.|+..+   +..+|..|.+
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~   36 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDY   36 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECccc
Confidence            46789999999999999999765   4667888876

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=96.28  E-value=0.033  Score=50.73  Aligned_cols=34  Identities=15%  Similarity=0.233  Sum_probs=27.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhcc-----------CCcEEEeCCc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKP-----------LNYTTVNRDT  305 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~-----------~~~~~i~~D~  305 (369)
                      -.++.+.|+||||||+++..++..           .++.+|+.+.
T Consensus        19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~   63 (226)
T cd01393          19 GRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG   63 (226)
T ss_pred             CcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence            368899999999999999998643           3567788765

RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.

>TIGR01242 26Sp45 26S proteasome subunit P45 family

Probab=96.28  E-value=0.01  Score=58.67  Aligned_cols=32  Identities=19%  Similarity=0.309  Sum_probs=26.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNR  303 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~  303 (369)
                      |+-++|.|+||+|||+++++++...+..++..
T Consensus       156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v  187 (364)
T TIGR01242       156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRV  187 (364)
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhCCCCEEec
Confidence            45689999999999999999999876555443

Many proteins may score above the trusted cutoff because an internal

>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response

Probab=96.27  E-value=0.027  Score=54.72  Aligned_cols=33  Identities=12%  Similarity=0.325  Sum_probs=26.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDT  305 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~  305 (369)
                      .++.+.|+||||||||+-.++...     .+.+|+...
T Consensus        56 ~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~   93 (325)
T cd00983          56 RIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEH   93 (325)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccc
Confidence            688999999999999999987532     466776643

RecA couples ATP hydrolysis to DNA strand exchange.

>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria

Probab=96.26  E-value=0.03  Score=52.57  Aligned_cols=100  Identities=10%  Similarity=0.159  Sum_probs=66.3

Q ss_pred             cccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCeEEE-------E----ecC----CCC---
Q psy4598          56 FSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMF-------V----ATQ----YDR---  117 (369)
Q Consensus        56 ~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~~~~-------~----~~~----~~~---  117 (369)
                      .+.+++.++.|.++|.+++.+|.-+         ..++......|+.+|+.|.--       +    .+.    ...   
T Consensus        83 e~~~~~~i~~lq~~~~~v~alT~~~---------~~~~~~t~~~Lk~~gi~fs~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (252)
T PF11019_consen   83 ESDVPNIINSLQNKGIPVIALTARG---------PNMEDWTLRELKSLGIDFSSSSFPEDGIISFPVFDSALSRAPSFYD  153 (252)
T ss_pred             chhHHHHHHHHHHCCCcEEEEcCCC---------hhhHHHHHHHHHHCCCCccccccccCcceecccccCCCCCCceeec
Confidence            4789999999999999999999743         233444445577788865311       1    100    000   


Q ss_pred             -----CCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccH-HHHHhCCCCcc
Q psy4598         118 -----YRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDH-LFAFNLNLAFF  181 (369)
Q Consensus       118 -----~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~-~~A~n~Gi~f~  181 (369)
                           ..=++-.|+..++.+.    +-.|++++||.|+..-.             .++ .+.++.||.|+
T Consensus       154 GIlft~~~~KG~~L~~fL~~~----~~~pk~IIfIDD~~~nl-------------~sv~~a~k~~~I~f~  206 (252)
T PF11019_consen  154 GILFTGGQDKGEVLKYFLDKI----NQSPKKIIFIDDNKENL-------------KSVEKACKKSGIDFI  206 (252)
T ss_pred             CeEEeCCCccHHHHHHHHHHc----CCCCCeEEEEeCCHHHH-------------HHHHHHHhhCCCcEE
Confidence                 1234567999999885    67899999999997211             233 34455889883

The function is not known.

>PLN02423 phosphomannomutase

Probab=96.26  E-value=0.0058  Score=57.04  Aligned_cols=41  Identities=22%  Similarity=0.290  Sum_probs=32.6

Q ss_pred             ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEec
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTN   78 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TN   78 (369)
                      ..+++||+||||+.+..            .+.|...++|++|+++ +.++++|-
T Consensus         7 ~~i~~~D~DGTLl~~~~------------~i~~~~~~ai~~l~~~-i~fviaTG   47 (245)
T PLN02423          7 GVIALFDVDGTLTAPRK------------EATPEMLEFMKELRKV-VTVGVVGG   47 (245)
T ss_pred             ceEEEEeccCCCcCCCC------------cCCHHHHHHHHHHHhC-CEEEEECC
Confidence            34666999999996532            1567889999999976 99999995

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=96.24  E-value=0.027  Score=58.03  Aligned_cols=36  Identities=22%  Similarity=0.439  Sum_probs=29.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhcc-------CCcEEEeCCcch
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKP-------LNYTTVNRDTLG  307 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~-------~~~~~i~~D~~~  307 (369)
                      ..+|.|+|++|+||||++..|+..       ..+.+++.|.++
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyR  392 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQR  392 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence            469999999999999999998763       246788988864

>KOG3120|consensus

Probab=96.23  E-value=0.037  Score=50.30  Aligned_cols=25  Identities=16%  Similarity=0.364  Sum_probs=21.8

Q ss_pred             ccccHHHHHHHHHHCCc-EEEEEecC
Q psy4598          55 LFSNIESVLKQYLDDGY-KLVIFTNQ   79 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~-~i~i~TNq   79 (369)
                      +.||+.++++.+++.|. -++|+|..
T Consensus        85 ~~Pgmv~lik~~ak~g~~eliIVSDa  110 (256)
T KOG3120|consen   85 IVPGMVRLIKSAAKLGCFELIIVSDA  110 (256)
T ss_pred             CCccHHHHHHHHHhCCCceEEEEecC
Confidence            46999999999999985 99999963

>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed

Probab=96.22  E-value=0.016  Score=56.36  Aligned_cols=60  Identities=13%  Similarity=0.251  Sum_probs=38.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcE--EEeCCcchhHHHHHHHHHHHHhCCCcEEEeCCC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYT--TVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTN  332 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~--~i~~D~~~~~~~~~~~~~~~l~~g~~vIiD~tn  332 (369)
                      +..+++.||||+||||+|+.++..++..  .++...+..-..+. .....+..+..++||...
T Consensus        51 ~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~~~l~-~~l~~l~~~~vl~IDEi~  112 (328)
T PRK00080         51 LDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKPGDLA-AILTNLEEGDVLFIDEIH  112 (328)
T ss_pred             CCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccChHHHH-HHHHhcccCCEEEEecHh
Confidence            3467899999999999999999987643  33333322211222 222344567778888654

>PF05729 NACHT: NACHT domain

Probab=96.21  E-value=0.0029  Score=54.14  Aligned_cols=22  Identities=36%  Similarity=0.591  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~  295 (369)
                      +++|.|.||+||||+++.++..
T Consensus         2 ~l~I~G~~G~GKStll~~~~~~   23 (166)
T PF05729_consen    2 VLWISGEPGSGKSTLLRKLAQQ   23 (166)
T ss_pred             EEEEECCCCCChHHHHHHHHHH
Confidence            6899999999999999999865

>PRK14951 DNA polymerase III subunits gamma and tau; Provisional

Probab=96.21  E-value=0.023  Score=59.79  Aligned_cols=28  Identities=29%  Similarity=0.526  Sum_probs=24.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNY  298 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~  298 (369)
                      .+..++|+|++|+||||+|+.+++.+++
T Consensus        37 l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC   64 (618)
T PRK14951         37 LHHAYLFTGTRGVGKTTVSRILAKSLNC   64 (618)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            3568899999999999999999887754

>PF13245 AAA_19: Part of AAA domain

Probab=96.20  E-value=0.0035  Score=47.61  Aligned_cols=22  Identities=18%  Similarity=0.569  Sum_probs=16.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHh
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYL  293 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~  293 (369)
                      ..++++.|+||||||+.+..+.
T Consensus        10 ~~~~vv~g~pGtGKT~~~~~~i   31 (76)
T PF13245_consen   10 SPLFVVQGPPGTGKTTTLAARI   31 (76)
T ss_pred             CCeEEEECCCCCCHHHHHHHHH
Confidence            3567889999999996555543

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=96.20  E-value=0.079  Score=46.58  Aligned_cols=76  Identities=16%  Similarity=0.254  Sum_probs=50.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC----CcEEEeCCcch----------------------------------hHHHHHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL----NYTTVNRDTLG----------------------------------SWQKCVS  314 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~----~~~~i~~D~~~----------------------------------~~~~~~~  314 (369)
                      .++.+.|++|||||||.+.++-..    |...++...+.                                  ..++...
T Consensus        29 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~~qrv~  108 (178)
T cd03247          29 EKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGERQRLA  108 (178)
T ss_pred             CEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHHHHHHH
Confidence            578999999999999999998653    33333321110                                  0122344


Q ss_pred             HHHHHHhCCCcEEEeCC--CCCHHHHHHHHHHHHhc
Q psy4598         315 VMKAALDSGLSVVVDNT--NPDKESRHRYIEAAKQH  348 (369)
Q Consensus       315 ~~~~~l~~g~~vIiD~t--n~~~~~r~~~~~la~~~  348 (369)
                      .++..+.....+|+|-+  .++...++.+.++.++.
T Consensus       109 laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~  144 (178)
T cd03247         109 LARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEV  144 (178)
T ss_pred             HHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHH
Confidence            55666677778889964  45777887777766543

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional

Probab=96.18  E-value=0.0046  Score=61.85  Aligned_cols=33  Identities=15%  Similarity=0.258  Sum_probs=27.2

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccCCcEEEe
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVN  302 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~  302 (369)
                      ..|+-|+|.||||||||+++++++...+..++.
T Consensus       177 ~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~  209 (398)
T PTZ00454        177 DPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIR  209 (398)
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence            346778999999999999999999987655443

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=96.18  E-value=0.012  Score=50.18  Aligned_cols=22  Identities=27%  Similarity=0.564  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~  295 (369)
                      -|+|+|+.|||||||+++|...
T Consensus         3 rimliG~~g~GKTTL~q~L~~~   24 (143)
T PF10662_consen    3 RIMLIGPSGSGKTTLAQALNGE   24 (143)
T ss_pred             eEEEECCCCCCHHHHHHHHcCC
Confidence            4799999999999999999875

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PRK13886 conjugal transfer protein TraL; Provisional

Probab=96.18  E-value=0.059  Score=50.12  Aligned_cols=88  Identities=13%  Similarity=0.170  Sum_probs=58.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchh----HH------------------HHHHHHHHHHhCCCc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGS----WQ------------------KCVSVMKAALDSGLS  325 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~----~~------------------~~~~~~~~~l~~g~~  325 (369)
                      ..+++.|--|+||||++..|+..+     .+..++.|....    |.                  .+...+......+..
T Consensus         4 i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~~~~~~l~~~~~~i~~~~~i~~r~fD~Lve~i~~~~~d   83 (241)
T PRK13886          4 IHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATFEGYKALNVRRLNIMDGDEINTRNFDALVEMIASTEGD   83 (241)
T ss_pred             EEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchhhhHHhcCCcceecccCCccchhhHHHHHHHHhccCCC
Confidence            345556899999999999887753     577888885421    11                  233444444446678


Q ss_pred             EEEeCCCCCHHHHHH------HHHHHHhcCCeEEEEEEeCC
Q psy4598         326 VVVDNTNPDKESRHR------YIEAAKQHGVRCIAVHMNIS  360 (369)
Q Consensus       326 vIiD~tn~~~~~r~~------~~~la~~~~~~v~~v~l~~~  360 (369)
                      +|||++..+...-..      +.+++.+.|..+++.++-+.
T Consensus        84 vIIDngAs~~~~l~~yl~~n~l~~ll~e~g~~lvvh~vi~g  124 (241)
T PRK13886         84 VIIDNGASSFVPLSHYLISNQVPALLQDMGHELVVHTVVTG  124 (241)
T ss_pred             EEEECCCcchHHHHHHHHhCcHHHHHHHCCceEEEEEEECC
Confidence            999988655444433      35678899999887776544

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.17  E-value=0.047  Score=48.52  Aligned_cols=78  Identities=17%  Similarity=0.274  Sum_probs=45.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC----CcEEEe-CCcch-------------------hHHHHHHHHHHHHhCCCcEE
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL----NYTTVN-RDTLG-------------------SWQKCVSVMKAALDSGLSVV  327 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~----~~~~i~-~D~~~-------------------~~~~~~~~~~~~l~~g~~vI  327 (369)
                      ...++++|++||||||+.+.|....    +...+. ...+.                   ......+.++.+++..-.+|
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~pd~i  104 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMRPDRI  104 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccCCCEE
Confidence            3579999999999999999998653    222221 11110                   00123445556666666676


Q ss_pred             EeCCCCCHHHHHHHHHHHHhcCCe
Q psy4598         328 VDNTNPDKESRHRYIEAAKQHGVR  351 (369)
Q Consensus       328 iD~tn~~~~~r~~~~~la~~~~~~  351 (369)
                      +-+.-.+.+... +++.+ ..|..
T Consensus       105 ~igEir~~ea~~-~~~a~-~tGh~  126 (186)
T cd01130         105 IVGEVRGGEALD-LLQAM-NTGHP  126 (186)
T ss_pred             EEEccCcHHHHH-HHHHH-hcCCC
Confidence            666555666543 44443 45544

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau

Probab=96.17  E-value=0.058  Score=52.64  Aligned_cols=26  Identities=27%  Similarity=0.601  Sum_probs=22.7

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      .+..+++.|+||+||||+|+.+++.+
T Consensus        35 ~~~~~Ll~G~~G~GKt~~a~~la~~l   60 (355)
T TIGR02397        35 IAHAYLFSGPRGTGKTSIARIFAKAL   60 (355)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            35678999999999999999998765

This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.

>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases

Probab=96.17  E-value=0.032  Score=52.46  Aligned_cols=33  Identities=21%  Similarity=0.500  Sum_probs=25.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc------CCcEEEeCCc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP------LNYTTVNRDT  305 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~------~~~~~i~~D~  305 (369)
                      .++++.|+||+||||++.+++..      .++.+++.+.
T Consensus        31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~   69 (271)
T cd01122          31 ELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE   69 (271)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc
Confidence            57899999999999999987654      2466777654

Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=96.17  E-value=0.055  Score=50.81  Aligned_cols=35  Identities=20%  Similarity=0.367  Sum_probs=28.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC----CcEEEeCCcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL----NYTTVNRDTL  306 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~----~~~~i~~D~~  306 (369)
                      -.++.+.||+||||||+.+.++..+    |-++++...+
T Consensus        28 G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i   66 (258)
T COG1120          28 GEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDI   66 (258)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCch
Confidence            3688999999999999999999854    4566666543

>PRK11784 tRNA 2-selenouridine synthase; Provisional

Probab=96.16  E-value=0.052  Score=53.30  Aligned_cols=141  Identities=16%  Similarity=0.223  Sum_probs=76.8

Q ss_pred             CCceEEEEEcCCCCCcchhhhhccCCCccccc-ccccccchhhhh-hhcc--ccccEEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         221 DKKQVLIMIGSQGSGKSSFVSTYLKPLNYTTV-NRDTLGSWQKCV-SVMK--AALDSVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       221 ~~~~i~v~~g~~~~gks~~~~~~~~~~~~~~i-~r~~~~~~~~~~-~~~~--~~~~~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      +.+.|+|.++-.| ..|..+.+.+...||... =..-+..|.... ...+  +....++++.|+.|||||++..+|.+. 
T Consensus        87 ~~~~ivvyC~rgG-~RS~~aa~~L~~~G~~v~~L~GG~~awr~~~~~~~~~~~~~~~~ivl~G~TGsGKT~iL~~L~~~-  164 (345)
T PRK11784         87 ANPRGLLYCWRGG-LRSGSVQQWLKEAGIDVPRLEGGYKAYRRFVIDTLEEAPAQFPLVVLGGNTGSGKTELLQALANA-  164 (345)
T ss_pred             CCCeEEEEECCCC-hHHHHHHHHHHHcCCCcEEEcCCHHHHHHhhHHHHhhhcccCceEecCCCCcccHHHHHHHHHhc-
Confidence            5667777764322 345555566666676211 112234444322 1122  123467889999999999999999865 


Q ss_pred             CcEEEeCCcch------------------hHHHHHHHHHHHHhCCCcEEEeCCCCCHHHH---HHHHHHHHhcCCeEEEE
Q psy4598         297 NYTTVNRDTLG------------------SWQKCVSVMKAALDSGLSVVVDNTNPDKESR---HRYIEAAKQHGVRCIAV  355 (369)
Q Consensus       297 ~~~~i~~D~~~------------------~~~~~~~~~~~~l~~g~~vIiD~tn~~~~~r---~~~~~la~~~~~~v~~v  355 (369)
                      +..+|+.....                  .|+.....+...+.....|+|++-...--..   ..+.+.-++.    .+|
T Consensus       165 ~~~vlDlE~~aehrGS~fG~~~~~qpsQ~~Fe~~l~~~l~~~~~~~~i~vE~Es~~IG~~~lP~~l~~~m~~~----~~v  240 (345)
T PRK11784        165 GAQVLDLEGLANHRGSSFGRLGGPQPSQKDFENLLAEALLKLDPARPIVVEDESRRIGRVHLPEALYEAMQQA----PIV  240 (345)
T ss_pred             CCeEEECCchhhhccccccCCCCCCcchHHHHHHHHHHHHcCCCCCeEEEEeccccccCccCCHHHHHHHhhC----CEE
Confidence            45567665542                  2343344444344445678887654211000   2222222222    367


Q ss_pred             EEeCCHHHHHHH
Q psy4598         356 HMNISKEHAKHN  367 (369)
Q Consensus       356 ~l~~~~e~~~~R  367 (369)
                      ++++|.|.-.+|
T Consensus       241 ~i~~~~e~Rv~~  252 (345)
T PRK11784        241 VVEAPLEERVER  252 (345)
T ss_pred             EEECCHHHHHHH
Confidence            889998876655

>PRK08181 transposase; Validated

Probab=96.16  E-value=0.011  Score=55.99  Aligned_cols=72  Identities=19%  Similarity=0.191  Sum_probs=41.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCCcchh-HHHH-----HHHHHHHHhCCCcEEEeCCCC---CHHHHH
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRDTLGS-WQKC-----VSVMKAALDSGLSVVVDNTNP---DKESRH  339 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~-----~~~~~i~~D~~~~-~~~~-----~~~~~~~l~~g~~vIiD~tn~---~~~~r~  339 (369)
                      -++|+|+||+|||+++.+++..     ..+.+++...+-. ....     .......+..-..+|||....   +.+...
T Consensus       108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~~~~~~~~  187 (269)
T PRK08181        108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVTKDQAETS  187 (269)
T ss_pred             eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEeccccccCCHHHHH
Confidence            4799999999999999999754     2355666544321 1100     111222334445677886542   444444


Q ss_pred             HHHHHH
Q psy4598         340 RYIEAA  345 (369)
Q Consensus       340 ~~~~la  345 (369)
                      .+.++.
T Consensus       188 ~Lf~li  193 (269)
T PRK08181        188 VLFELI  193 (269)
T ss_pred             HHHHHH
Confidence            444443

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=96.16  E-value=0.064  Score=46.98  Aligned_cols=75  Identities=20%  Similarity=0.359  Sum_probs=47.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC----CcEEEeC-------------------Cc--ch--h-H---------HHHHHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL----NYTTVNR-------------------DT--LG--S-W---------QKCVSV  315 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~----~~~~i~~-------------------D~--~~--~-~---------~~~~~~  315 (369)
                      .++.++|++|||||||.+.++-..    |-+.++.                   +.  +.  + .         ++....
T Consensus        27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~qrv~l  106 (173)
T cd03230          27 EIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLKLSGGMKQRLAL  106 (173)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEecCCccccCCcHHHHhhcCHHHHHHHHH
Confidence            578999999999999999998743    2222221                   10  00  0 1         122345


Q ss_pred             HHHHHhCCCcEEEeCC--CCCHHHHHHHHHHHHh
Q psy4598         316 MKAALDSGLSVVVDNT--NPDKESRHRYIEAAKQ  347 (369)
Q Consensus       316 ~~~~l~~g~~vIiD~t--n~~~~~r~~~~~la~~  347 (369)
                      ++..+..-..+++|-+  +++...+..+.++.++
T Consensus       107 aral~~~p~illlDEPt~~LD~~~~~~l~~~l~~  140 (173)
T cd03230         107 AQALLHDPELLILDEPTSGLDPESRREFWELLRE  140 (173)
T ss_pred             HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            5556666778889964  4577778777666554

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional

Probab=96.16  E-value=0.0036  Score=62.83  Aligned_cols=32  Identities=31%  Similarity=0.475  Sum_probs=26.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRD  304 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D  304 (369)
                      .-|+|.||||||||++|+.+++.++..++..|
T Consensus       109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id  140 (412)
T PRK05342        109 SNILLIGPTGSGKTLLAQTLARILDVPFAIAD  140 (412)
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHhCCCceecc
Confidence            45899999999999999999998765554433

>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type

Probab=96.16  E-value=0.0033  Score=61.17  Aligned_cols=37  Identities=19%  Similarity=0.369  Sum_probs=28.5

Q ss_pred             hhccccccEEEEEEcCCCCcHHHHHHHHhccCCcEEE
Q psy4598         265 SVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTV  301 (369)
Q Consensus       265 ~~~~~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i  301 (369)
                      ....+...+.|+++|+|||||||+++.|+..++..++
T Consensus       155 ~~~~~~~~~~~~~~G~~~~gkstl~~~l~~~~~~~~v  191 (325)
T TIGR01526       155 REVRPFFVKTVAILGGESTGKSTLVNKLAAVFNTTSA  191 (325)
T ss_pred             HHHHhhcCcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence            3334444568999999999999999999998765443

E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=96.15  E-value=0.07  Score=50.59  Aligned_cols=35  Identities=17%  Similarity=0.315  Sum_probs=28.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG  307 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~  307 (369)
                      ..|+++|++|+||||+++.++..+     ...+++.|..+
T Consensus        76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~r  115 (270)
T PRK06731         76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR  115 (270)
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCC
Confidence            578999999999999999887653     46678888764

>cd00881 GTP_translation_factor GTP translation factor family

Probab=96.14  E-value=0.045  Score=47.61  Aligned_cols=21  Identities=19%  Similarity=0.298  Sum_probs=19.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhcc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~  295 (369)
                      |+++|.+||||||+...|...
T Consensus         2 v~v~G~~~~GKStlln~l~~~   22 (189)
T cd00881           2 VGIAGHVDHGKTTLTERLLYV   22 (189)
T ss_pred             EEEEeCCCCCHHHHHHHHHHh
Confidence            688999999999999999765

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional

Probab=96.14  E-value=0.011  Score=59.84  Aligned_cols=31  Identities=19%  Similarity=0.282  Sum_probs=25.9

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEE
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTV  301 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i  301 (369)
                      .|.-++|.|+||+|||++|++++..++..++
T Consensus       216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi  246 (438)
T PTZ00361        216 PPKGVILYGPPGTGKTLLAKAVANETSATFL  246 (438)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence            4567899999999999999999998764444

>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork

Probab=96.13  E-value=0.04  Score=51.59  Aligned_cols=85  Identities=12%  Similarity=0.147  Sum_probs=52.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc------CCcEEEeCCcch---------------------------hHHHHHHHHHHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP------LNYTTVNRDTLG---------------------------SWQKCVSVMKAA  319 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~------~~~~~i~~D~~~---------------------------~~~~~~~~~~~~  319 (369)
                      .++++.|.||+|||+++..++..      .++.+++.+.=.                           .|+++. .+...
T Consensus        20 ~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~i~~g~l~~~e~~~~~-~~~~~   98 (259)
T PF03796_consen   20 ELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEEELAARLLARLSGVPYNKIRSGDLSDEEFERLQ-AAAEK   98 (259)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHHHHCCGCHHHHHHHHH-HHHHH
T ss_pred             cEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhhhhccccCHHHHHHHH-HHHHH
Confidence            69999999999999999998763      356777775420                           122222 23344


Q ss_pred             HhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEe
Q psy4598         320 LDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMN  358 (369)
Q Consensus       320 l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~  358 (369)
                      +.....+|.|....+.......+...+..+..+.+|++|
T Consensus        99 l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~ID  137 (259)
T PF03796_consen   99 LSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFID  137 (259)
T ss_dssp             HHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEE
T ss_pred             HhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEec
Confidence            555556667777777777666665554443445555554

Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....

>TIGR01650 PD_CobS cobaltochelatase, CobS subunit

Probab=96.13  E-value=0.0038  Score=60.48  Aligned_cols=28  Identities=29%  Similarity=0.529  Sum_probs=23.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEE
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTV  301 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i  301 (369)
                      -|+|.|+||+||||+++.+++.+++.++
T Consensus        66 ~ilL~G~pGtGKTtla~~lA~~l~~~~~   93 (327)
T TIGR01650        66 RVMVQGYHGTGKSTHIEQIAARLNWPCV   93 (327)
T ss_pred             cEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence            3799999999999999999998765443

This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	369
3zvl_A	416	The Structural Basis For Substrate Recognition By M		3e-62
3zvm_A	416	The Structural Basis For Substrate Recognition By M		4e-62
3zvn_A	416	The Structural Basis For Substrate Recognition By M		9e-62
1yj5_A	383	Molecular Architecture Of Mammalian Polynucleotide		2e-61
3u7e_B	381	Crystal Structure Of Mpnkp Catalytic Fragment (D170		7e-61
3u7g_A	379	Crystal Structure Of Mpnkp Catalytic Fragment (D170		1e-60

>pdb|3ZVL|A Chain A, The Structural Basis For Substrate Recognition By Mammalian Polynucleotide Kinase 3' Phosphatase Length = 416

Iteration: 1
 Score =  235 bits (600), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 136/364 (37%), Positives = 181/364 (49%), Gaps = 63/364 (17%)
Query: 12  KLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGY 71
           KLLVFT++ V    K+A+FDLDGTLITT+SGKVFP    DW++L+  I   L++   +GY
Sbjct: 45  KLLVFTASGVKPQGKVAAFDLDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGY 104
Query: 72  KLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQ 131
           KLVIFTNQ  IGR K+    F+ K E +++ L VP Q+ VAT     RKPV GMW++L +
Sbjct: 105 KLVIFTNQMGIGRGKLPAEVFKGKVEAVLEKLGVPFQVLVATHAGLNRKPVSGMWDHLQE 164
Query: 132 EKNGDLAIDISQSFYXXXXXXXXXXXXP-KKKKDFACTDHXXXXXXXXXXXTPEQIFLNE 190
           + N  + I +  S +            P +KKKDF+C D            TPE+ FL  
Sbjct: 165 QANEGIPISVEDSVFVGDAAGRLANWAPGRKKKDFSCADRLFALNVGLPFATPEEFFLKW 224
Query: 191 KAPDFPNLPTFKPREV-------YQKAQSQTIPNIPHDKKQVLIMIGSQGSGKSSFVSTY 243
            A  F  LP F PR +         ++ S   PN      +V++ +G  G+GKS+F+  +
Sbjct: 225 PAARF-ELPAFDPRTISSAGPLYLPESSSLLSPN-----PEVVVAVGFPGAGKSTFIQEH 278
Query: 244 LKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNR 303
           L    Y  VNRDTLGSWQ+CVS  +AA                                 
Sbjct: 279 LVSAGYVHVNRDTLGSWQRCVSSCQAA--------------------------------- 305
Query: 304 DTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEH 363
                           L  G  VV+DNTNPD  SR RYI+ AK  GV C   +   + E 
Sbjct: 306 ----------------LRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFXATIEQ 349
Query: 364 AKHN 367
           A+HN
Sbjct: 350 ARHN 353

>pdb|3ZVM|A Chain A, The Structural Basis For Substrate Recognition By Mammalian Polynucleotide Kinase 3' Phosphatase Length = 416

Iteration: 1
 Score =  235 bits (599), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 136/364 (37%), Positives = 181/364 (49%), Gaps = 63/364 (17%)
Query: 12  KLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGY 71
           KLLVFT++ V    K+A+FDLDGTLITT+SGKVFP    DW++L+  I   L++   +GY
Sbjct: 45  KLLVFTASGVKPQGKVAAFDLDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGY 104
Query: 72  KLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQ 131
           KLVIFTNQ  IGR K+    F+ K E +++ L VP Q+ VAT     RKPV GMW++L +
Sbjct: 105 KLVIFTNQMGIGRGKLPAEVFKGKVEAVLEKLGVPFQVLVATHAGLNRKPVSGMWDHLQE 164
Query: 132 EKNGDLAIDISQSFYXXXXXXXXXXXXP-KKKKDFACTDHXXXXXXXXXXXTPEQIFLNE 190
           + N  + I +  S +            P +KKKDF+C D            TPE+ FL  
Sbjct: 165 QANEGIPISVEDSVFVGDAAGRLANWAPGRKKKDFSCADRLFALNVGLPFATPEEFFLKW 224
Query: 191 KAPDFPNLPTFKPREV-------YQKAQSQTIPNIPHDKKQVLIMIGSQGSGKSSFVSTY 243
            A  F  LP F PR +         ++ S   PN      +V++ +G  G+GKS+F+  +
Sbjct: 225 PAARF-ELPAFDPRTISSAGPLYLPESSSLLSPN-----PEVVVAVGFPGAGKSTFIQEH 278
Query: 244 LKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNR 303
           L    Y  VNRDTLGSWQ+CVS  +AA                                 
Sbjct: 279 LVSAGYVHVNRDTLGSWQRCVSSCQAA--------------------------------- 305
Query: 304 DTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEH 363
                           L  G  VV+DNTNPD  SR RYI+ AK  GV C   +   + E 
Sbjct: 306 ----------------LRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQ 349
Query: 364 AKHN 367
           A+HN
Sbjct: 350 ARHN 353

>pdb|3ZVN|A Chain A, The Structural Basis For Substrate Recognition By Mammalian Polynucleotide Kinase 3' Phosphatase Length = 416

Iteration: 1
 Score =  233 bits (595), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 135/364 (37%), Positives = 181/364 (49%), Gaps = 63/364 (17%)
Query: 12  KLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGY 71
           KLLVFT++ V    K+A+F+LDGTLITT+SGKVFP    DW++L+  I   L++   +GY
Sbjct: 45  KLLVFTASGVKPQGKVAAFNLDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGY 104
Query: 72  KLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQ 131
           KLVIFTNQ  IGR K+    F+ K E +++ L VP Q+ VAT     RKPV GMW++L +
Sbjct: 105 KLVIFTNQMGIGRGKLPAEVFKGKVEAVLEKLGVPFQVLVATHAGLNRKPVSGMWDHLQE 164
Query: 132 EKNGDLAIDISQSFYXXXXXXXXXXXXP-KKKKDFACTDHXXXXXXXXXXXTPEQIFLNE 190
           + N  + I +  S +            P +KKKDF+C D            TPE+ FL  
Sbjct: 165 QANEGIPISVEDSVFVGDAAGRLANWAPGRKKKDFSCADRLFALNVGLPFATPEEFFLKW 224
Query: 191 KAPDFPNLPTFKPREV-------YQKAQSQTIPNIPHDKKQVLIMIGSQGSGKSSFVSTY 243
            A  F  LP F PR +         ++ S   PN      +V++ +G  G+GKS+F+  +
Sbjct: 225 PAARF-ELPAFDPRTISSAGPLYLPESSSLLSPN-----PEVVVAVGFPGAGKSTFIQEH 278
Query: 244 LKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNR 303
           L    Y  VNRDTLGSWQ+CVS  +AA                                 
Sbjct: 279 LVSAGYVHVNRDTLGSWQRCVSSCQAA--------------------------------- 305
Query: 304 DTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEH 363
                           L  G  VV+DNTNPD  SR RYI+ AK  GV C   +   + E 
Sbjct: 306 ----------------LRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFXATIEQ 349
Query: 364 AKHN 367
           A+HN
Sbjct: 350 ARHN 353

>pdb|1YJ5|A Chain A, Molecular Architecture Of Mammalian Polynucleotide Kinase, A Dna Repair Enzyme Length = 383

Iteration: 1
 Score =  233 bits (593), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 134/360 (37%), Positives = 180/360 (50%), Gaps = 55/360 (15%)
Query: 12  KLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGY 71
           KLLVFT++ V    K+A+FDLDGTLITT+SGKVFP    DW++L+  I   L++   +GY
Sbjct: 12  KLLVFTASGVKPQGKVAAFDLDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGY 71
Query: 72  KLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQ 131
           KLVIFTNQ  IGR K+    F+ K E +++ L VP Q+ VAT     RKPV G W++L +
Sbjct: 72  KLVIFTNQXGIGRGKLPAEVFKGKVEAVLEKLGVPFQVLVATHAGLNRKPVSGXWDHLQE 131
Query: 132 EKNGDLAIDISQSFYXXXXXXXXXXXXP-KKKKDFACTDHXXXXXXXXXXXTPEQIFLNE 190
           + N  + I +  S +            P +KKKDF+C D            TPE+ FL  
Sbjct: 132 QANEGIPISVEDSVFVGDAAGRLANWAPGRKKKDFSCADRLFALNVGLPFATPEEFFLKW 191
Query: 191 KAPDFPNLPTFKPREVYQKAQSQTIP---NIPHDKKQVLIMIGSQGSGKSSFVSTYLKPL 247
            A  F  LP F PR +   A    +P   ++     +V++ +G  G+GKS+F+  +L   
Sbjct: 192 PAARF-ELPAFDPRTI-SSAGPLYLPESSSLLSPNPEVVVAVGFPGAGKSTFIQEHLVSA 249
Query: 248 NYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG 307
            Y  VNRDTLGSWQ+CVS  +AA                                     
Sbjct: 250 GYVHVNRDTLGSWQRCVSSCQAA------------------------------------- 272
Query: 308 SWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367
                       L  G  VV+DNTNPD  SR RYI+ AK  GV C   +   + E A+HN
Sbjct: 273 ------------LRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHN 320

>pdb|3U7E|B Chain B, Crystal Structure Of Mpnkp Catalytic Fragment (D170a) Length = 381

Iteration: 1
 Score =  230 bits (587), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 133/360 (36%), Positives = 179/360 (49%), Gaps = 55/360 (15%)
Query: 12  KLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGY 71
           KLLVFT++ V    K+A+F LDGTLITT+SGKVFP    DW++L+  I   L++   +GY
Sbjct: 10  KLLVFTASGVKPQGKVAAFALDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGY 69
Query: 72  KLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQ 131
           KLVIFTNQ  IGR K+    F+ K E +++ L VP Q+ VAT     RKPV G W++L +
Sbjct: 70  KLVIFTNQXGIGRGKLPAEVFKGKVEAVLEKLGVPFQVLVATHAGLNRKPVSGXWDHLQE 129
Query: 132 EKNGDLAIDISQSFYXXXXXXXXXXXXP-KKKKDFACTDHXXXXXXXXXXXTPEQIFLNE 190
           + N  + I +  S +            P +KKKDF+C D            TPE+ FL  
Sbjct: 130 QANEGIPISVEDSVFVGDAAGRLANWAPGRKKKDFSCADRLFALNVGLPFATPEEFFLKW 189
Query: 191 KAPDFPNLPTFKPREVYQKAQSQTIP---NIPHDKKQVLIMIGSQGSGKSSFVSTYLKPL 247
            A  F  LP F PR +   A    +P   ++     +V++ +G  G+GKS+F+  +L   
Sbjct: 190 PAARF-ELPAFDPRTI-SSAGPLYLPESSSLLSPNPEVVVAVGFPGAGKSTFIQEHLVSA 247
Query: 248 NYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG 307
            Y  VNRDTLGSWQ+CVS  +AA                                     
Sbjct: 248 GYVHVNRDTLGSWQRCVSSCQAA------------------------------------- 270
Query: 308 SWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367
                       L  G  VV+DNTNPD  SR RYI+ AK  GV C   +   + E A+HN
Sbjct: 271 ------------LRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFXATIEQARHN 318

>pdb|3U7G|A Chain A, Crystal Structure Of Mpnkp Catalytic Fragment (D170a) Bound To Single- Stranded Dna (Tcctap) Length = 379

Iteration: 1
 Score =  230 bits (586), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 133/360 (36%), Positives = 179/360 (49%), Gaps = 55/360 (15%)
Query: 12  KLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGY 71
           KLLVFT++ V    K+A+F LDGTLITT+SGKVFP    DW++L+  I   L++   +GY
Sbjct: 8   KLLVFTASGVKPQGKVAAFALDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGY 67
Query: 72  KLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQ 131
           KLVIFTNQ  IGR K+    F+ K E +++ L VP Q+ VAT     RKPV G W++L +
Sbjct: 68  KLVIFTNQXGIGRGKLPAEVFKGKVEAVLEKLGVPFQVLVATHAGLNRKPVSGXWDHLQE 127
Query: 132 EKNGDLAIDISQSFYXXXXXXXXXXXXP-KKKKDFACTDHXXXXXXXXXXXTPEQIFLNE 190
           + N  + I +  S +            P +KKKDF+C D            TPE+ FL  
Sbjct: 128 QANEGIPISVEDSVFVGDAAGRLANWAPGRKKKDFSCADRLFALNVGLPFATPEEFFLKW 187
Query: 191 KAPDFPNLPTFKPREVYQKAQSQTIP---NIPHDKKQVLIMIGSQGSGKSSFVSTYLKPL 247
            A  F  LP F PR +   A    +P   ++     +V++ +G  G+GKS+F+  +L   
Sbjct: 188 PAARF-ELPAFDPRTI-SSAGPLYLPESSSLLSPNPEVVVAVGFPGAGKSTFIQEHLVSA 245
Query: 248 NYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG 307
            Y  VNRDTLGSWQ+CVS  +AA                                     
Sbjct: 246 GYVHVNRDTLGSWQRCVSSCQAA------------------------------------- 268
Query: 308 SWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367
                       L  G  VV+DNTNPD  SR RYI+ AK  GV C   +   + E A+HN
Sbjct: 269 ------------LRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHN 316

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	369
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	6e-84
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	3e-19
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	2e-15
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	2e-14
3l8h_A	179	Putative haloacid dehalogenase-like hydrolase; HAD	6e-13
2fpr_A	176	Histidine biosynthesis bifunctional protein HISB;	2e-12
2gmw_A	211	D,D-heptose 1,7-bisphosphate phosphatase; Zn-bindi	6e-11
2o2x_A	218	Hypothetical protein; structural genomics, joint c	1e-10
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	3e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	2e-07
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	1e-05

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* Length = 416

 Score =  260 bits (664), Expect = 6e-84
 Identities = 148/370 (40%), Positives = 196/370 (52%), Gaps = 51/370 (13%)

Query: 1   MKGSWDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIE 60
               W+ +   KLLVFT++ V    K+A+FDLDGTLITT+SGKVFP    DW++L+  I 
Sbjct: 36  SSLGWESLK--KLLVFTASGVKPQGKVAAFDLDGTLITTRSGKVFPTSPSDWRILYPEIP 93

Query: 61  SVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRK 120
             L++   +GYKLVIFTNQ  IGR K+    F+ K E +++ L VP Q+ VAT     RK
Sbjct: 94  KKLQELAAEGYKLVIFTNQMGIGRGKLPAEVFKGKVEAVLEKLGVPFQVLVATHAGLNRK 153

Query: 121 PVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAP-KKKKDFACTDHLFAFNLNLA 179
           PV GMW++L ++ N  + I +  S + GDAAGR ANWAP +KKKDF+C D LFA N+ L 
Sbjct: 154 PVSGMWDHLQEQANEGIPISVEDSVFVGDAAGRLANWAPGRKKKDFSCADRLFALNVGLP 213

Query: 180 FFTPEQIFLNEKAPDFPNLPTFKPREVYQKAQSQTIPNIPHDKKQVLIMIGSQGSGKSSF 239
           F TPE+ FL   A  F   P F PR +          +         ++           
Sbjct: 214 FATPEEFFLKWPAARFEL-PAFDPRTISSAGPLYLPESSSLLSPNPEVV----------- 261

Query: 240 VSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYT 299
                                               + +G  G+GKS+F+  +L    Y 
Sbjct: 262 ------------------------------------VAVGFPGAGKSTFIQEHLVSAGYV 285

Query: 300 TVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNI 359
            VNRDTLGSWQ+CVS  +AAL  G  VV+DNTNPD  SR RYI+ AK  GV C   +   
Sbjct: 286 HVNRDTLGSWQRCVSSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCA 345

Query: 360 SKEHAKHNIK 369
           + E A+HN +
Sbjct: 346 TIEQARHNNR 355

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Length = 181

 Score = 83.3 bits (206), Expect = 3e-19
 Identities = 22/148 (14%), Positives = 48/148 (32%), Gaps = 26/148 (17%)

Query: 223 KQVLIMIGSQGSGKSSFVSTYLKP-LNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQ 281
           K++++ IG  GSGKS++   ++     +  +NRD                     ++  +
Sbjct: 2   KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDY----------------RQSIMAHE 45

Query: 282 GSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRY 341
              +  +                  G        +    DS   V++ +TN + E R  +
Sbjct: 46  ERDEYKYTKKKEG---------IVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAW 96

Query: 342 IEAAKQHGVRCIAVHMNISKEHAKHNIK 369
              AK++G +      ++          
Sbjct: 97  ETFAKEYGWKVEHKVFDVPWTELVKRNS 124

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Length = 301

 Score = 75.5 bits (185), Expect = 2e-15
 Identities = 22/119 (18%), Positives = 42/119 (35%), Gaps = 25/119 (21%)

Query: 274 VLIMIGSQGSGKSSFVSTYLKPL-NYTTVNRDTL---------------------GSWQK 311
           +++ IG  GSGKS++   ++     +  +NRD                            
Sbjct: 4   IILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGM 63

Query: 312 CVSVMKAALDSGLS---VVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN 367
                K+ L  G S   V++ +TN + E R  +   AK++G +      ++        
Sbjct: 64  QFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKR 122

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* Length = 260

 Score = 71.8 bits (176), Expect = 2e-14
 Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 17/110 (15%)

Query: 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVN---------RDTLGSW--------QKCVSVM 316
           ++I+ G  G GKS+F     K L+   ++         R++   W        +K    +
Sbjct: 6   LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRL 65

Query: 317 KAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKH 366
             +      V+VD+TN     R   I  AK++      +++  S +    
Sbjct: 66  IDSALKNYWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIR 115

>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica} Length = 179

 Score = 65.7 bits (161), Expect = 6e-13
 Identities = 28/140 (20%), Positives = 53/140 (37%), Gaps = 20/140 (14%)

Query: 30  FDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMST 89
            D DG +        F     +W  L  ++++ + +     + +V+ TNQ  + R    T
Sbjct: 6   LDRDGVVNQDSDA--FVKSPDEWIALPGSLQA-IARLTQADWTVVLATNQSGLARGLFDT 62

Query: 90  RDFQAKAEKIIKSLNVPVQMFVATQY-----DR---YRKPVPGMWEYLSQEKNGDLAIDI 141
               A  +K+ ++L     +  A        D     RKP+PGM+  +++       +D+
Sbjct: 63  ATLNAIHDKMHRALAQMGGVVDAIFMCPHGPDDGCACRKPLPGMYRDIARR----YDVDL 118

Query: 142 SQSFYAGD-----AAGRAAN 156
           +     GD      A   A 
Sbjct: 119 AGVPAVGDSLRDLQAAAQAG 138

>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A* Length = 176

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 34/148 (22%), Positives = 50/148 (33%), Gaps = 20/148 (13%)

Query: 23  NSAKIASFDLDGTLITTKSGKVFPVDT-HDWKLLFSNIESVLKQYLDDGYKLVIFTNQGA 81
           +S K    D DGTLI+ +    F VD           I   L +    GYKLV+ TNQ  
Sbjct: 12  SSQKYLFIDRDGTLIS-EPPSDFQVDRFDKLAFEPGVIPQ-LLKLQKAGYKLVMITNQDG 69

Query: 82  IGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRY--------RKPVPGMWEYLSQEK 133
           +G +     DF      +++        F       +        RKP   + E    E+
Sbjct: 70  LGTQSFPQADFDGPHNLMMQIFTSQGVQFDEVLICPHLPADECDCRKPKVKLVERYLAEQ 129

Query: 134 NGDLAIDISQSFYAGD-----AAGRAAN 156
                +D + S+  GD            
Sbjct: 130 A----MDRANSYVIGDRATDIQLAENMG 153

>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A* Length = 211

 Score = 60.4 bits (147), Expect = 6e-11
 Identities = 34/147 (23%), Positives = 58/147 (39%), Gaps = 28/147 (19%)

Query: 30  FDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMST 89
            D DGT+        +  +  +++ +   +   +++    G+ LV+ TNQ  I R K + 
Sbjct: 30  LDRDGTINVDHG---YVHEIDNFEFI-DGVIDAMRELKKMGFALVVVTNQSGIARGKFTE 85

Query: 90  RDFQAKAEKIIKSL---NVPVQMF---------VATQYDRY---RKPVPGMWEYLSQEKN 134
             F+   E +  SL   +V +               ++ +    RKP PGM         
Sbjct: 86  AQFETLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSARDY-- 143

Query: 135 GDLAIDISQSFYAGD-----AAGRAAN 156
             L ID++ S+  GD      A  AAN
Sbjct: 144 --LHIDMAASYMVGDKLEDMQAAVAAN 168

>2o2x_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP: c.108.1.19 Length = 218

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 36/147 (24%), Positives = 52/147 (35%), Gaps = 28/147 (19%)

Query: 30  FDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMST 89
            D DGT+        +P D  +  L    +   +      G  +V+ TNQ  I R     
Sbjct: 36  LDRDGTINVDTD---YPSDPAEIVLR-PQMLPAIATANRAGIPVVVVTNQSGIARGYFGW 91

Query: 90  RDFQAKAEKIIKSL---NVPVQMF---------VATQYDRY---RKPVPGMWEYLSQEKN 134
             F A   ++++ L    V V M          V          RKP PGM     +   
Sbjct: 92  SAFAAVNGRVLELLREEGVFVDMVLACAYHEAGVGPLAIPDHPMRKPNPGMLVEAGKR-- 149

Query: 135 GDLAIDISQSFYAGD-----AAGRAAN 156
             LA+D+ +S   GD      AG+ A 
Sbjct: 150 --LALDLQRSLIVGDKLADMQAGKRAG 174

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193

 Score = 58.0 bits (140), Expect = 3e-10
 Identities = 14/117 (11%), Positives = 31/117 (26%), Gaps = 21/117 (17%)

Query: 274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL---------------------GSWQKC 312
           ++I+ G   +GK++        L    +++D                        +    
Sbjct: 7   LIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGATAIMML 66

Query: 313 VSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK 369
                  L SG S+++++         R            I +    S +     I 
Sbjct: 67  YHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERIL 123

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.3 bits (127), Expect = 8e-08
 Identities = 37/298 (12%), Positives = 75/298 (25%), Gaps = 106/298 (35%)

Query: 131 QEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPEQIFLNE 190
           Q +  D+      +F                  +F C D                     
Sbjct: 15  QYQYKDILSVFEDAF----------------VDNFDCKD--------------------- 37

Query: 191 KAPDFPNLPTFKPREVYQKAQSQTIPNIPHDKKQVLIMIG----SQGSGKSSFVSTYLKP 246
              D P       + +  K +   I          L +       Q      FV   L+ 
Sbjct: 38  -VQDMP-------KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89

Query: 247 LNYT-------TVNRDTLGSWQ------------------------KCVSVMKAALDSV- 274
            NY        T  R      +                        +    ++ AL  + 
Sbjct: 90  -NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148

Query: 275 ----LIMIGSQGSGKSSFVSTYLKPLNYTTVNRD-----TLGSWQKCVSVMK------AA 319
               +++ G  GSGK+                        L +     +V++        
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 320 LDSGLSVVVDNTNPDK------ESRHRYIEAAKQHGVRCIAVHMNI-SKEHAKH-NIK 369
           +D   +   D+++  K      ++  R +  +K +   C+ V +N+ + +     N+ 
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY-ENCLLVLLNVQNAKAWNAFNLS 265

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 5e-07
 Identities = 26/147 (17%), Positives = 44/147 (29%), Gaps = 44/147 (29%)

Query: 13  LLVFTSNDVCNSAKIASFDLD-GTLITTKSGKVF-----------PVDTHDWKLLFSNIE 60
           LLV    +V N+    +F+L    L+TT+  +V             +D H   L    ++
Sbjct: 247 LLVL--LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304

Query: 61  SVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRY 118
           S+L +YLD                     +D   +          P  + +   +  D  
Sbjct: 305 SLLLKYLD------------------CRPQDLPREVLTTN-----PRRLSIIAESIRDG- 340

Query: 119 RKPVPGMWEYLSQEKNGDLAIDISQSF 145
                  W+         L   I  S 
Sbjct: 341 ----LATWDNWKHVNCDKLTTIIESSL 363

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 60/388 (15%), Positives = 125/388 (32%), Gaps = 99/388 (25%)

Query: 16  FTSNDVCNSAK--IASFDLDGTLIT----TKSGKVFPVDTHDWKLLFSNIESVLKQYLDD 69
           F   DV +  K  ++  ++D  +++    + + ++F      W LL    E ++++++++
Sbjct: 33  FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF------WTLLSKQ-EEMVQKFVEE 85

Query: 70  G----YKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYR-KPVPG 124
                YK ++   +    +  M TR +  + +++        Q+F   +Y+  R +P   
Sbjct: 86  VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND----NQVF--AKYNVSRLQPYLK 139

Query: 125 MWEYLSQ-EKNGDLAIDISQSFYAGDA-AGR---AANWAPKKKKDFACTDH----LFAFN 175
           + + L +     ++ ID       G   +G+   A +          C  +       F 
Sbjct: 140 LRQALLELRPAKNVLID-------GVLGSGKTWVALD---------VCLSYKVQCKMDFK 183

Query: 176 ---LNLA-FFTPEQIFLNEKAPDFPNLPT-FKPREVYQKAQSQTIPNIPHDKKQVLIMIG 230
              LNL    +PE +    +      L     P    +   S  I    H  +  L  + 
Sbjct: 184 IFWLNLKNCNSPETVLEMLQ-----KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238

Query: 231 SQGSGKSSFV-------STYLKPLNY------TTVNR---DTLGSWQKCVSVMKAALDSV 274
                ++  +       +      N       TT  +   D L +       +     ++
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298

Query: 275 LIMIGSQGSGKSSFVSTYLK------PLNYTTVN-----------RDTLGSWQKCVSVMK 317
                +    KS     YL       P    T N           RD L +W     V  
Sbjct: 299 -----TPDEVKSLL-LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNC 352

Query: 318 AALDSGLSVVVDNTNPDKESRHRYIEAA 345
             L + +   ++   P  E R  +   +
Sbjct: 353 DKLTTIIESSLNVLEPA-EYRKMFDRLS 379

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} Length = 253

 Score = 50.7 bits (120), Expect = 2e-07
 Identities = 15/148 (10%), Positives = 44/148 (29%), Gaps = 27/148 (18%)

Query: 219 PHDKKQVLIMIGSQGSGKSSFVSTYLKPL--NYTTVNRDTLGSWQKCVSVMKAALDSVLI 276
              +   +++ G  G+GK++      K    N   ++ D+           ++     L 
Sbjct: 28  SSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF----------RSQHPHYLE 77

Query: 277 MIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKE 336
           +    G     +   +               + +   S++      G +++++ T    +
Sbjct: 78  LQQEYGKDSVEYTKDF---------------AGKMVESLVTKLSSLGYNLLIEGTLRTVD 122

Query: 337 SRHRYIEAAKQHGVRCIAVHMNISKEHA 364
              +  +  K  G       +    E +
Sbjct: 123 VPKKTAQLLKNKGYEVQLALIATKPELS 150

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* Length = 287

 Score = 45.4 bits (106), Expect = 1e-05
 Identities = 21/148 (14%), Positives = 46/148 (31%), Gaps = 27/148 (18%)

Query: 219 PHDKKQVLIMIGSQGSGKSSFVSTYLKPL--NYTTVNRDTLGSWQKCVSVMKAALDSVLI 276
             +     ++ G  GSGK+S  S   +    N   ++ DT           K    +   
Sbjct: 29  AVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF----------KQQHPNFDE 78

Query: 277 MIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKE 336
           ++          V+ Y               S +   +++    D G ++V++ T    +
Sbjct: 79  LVKLYEKDVVKHVTPY---------------SNRMTEAIISRLSDQGYNLVIEGTGRTTD 123

Query: 337 SRHRYIEAAKQHGVRCIAVHMNISKEHA 364
              +     +  G       M + K ++
Sbjct: 124 VPIQTATMLQAKGYETKMYVMAVPKINS 151

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	369
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	100.0
2fpr_A	176	Histidine biosynthesis bifunctional protein HISB;	99.9
3l8h_A	179	Putative haloacid dehalogenase-like hydrolase; HAD	99.89
2gmw_A	211	D,D-heptose 1,7-bisphosphate phosphatase; Zn-bindi	99.84
2o2x_A	218	Hypothetical protein; structural genomics, joint c	99.81
3ib6_A	189	Uncharacterized protein; structural genomics, unkn	99.8
3kbb_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	99.76
2oda_A	196	Hypothetical protein pspto_2114; haloacid dehaloge	99.75
2pr7_A	137	Haloacid dehalogenase/epoxide hydrolase family; NP	99.71
4g9b_A	243	Beta-PGM, beta-phosphoglucomutase; HAD, putative p	99.67
4gib_A	250	Beta-phosphoglucomutase; rossmann fold, HAD-like,	99.66
2ah5_A	210	COG0546: predicted phosphatases; MCSG, structural	99.63
3kzx_A	231	HAD-superfamily hydrolase, subfamily IA, variant;	99.61
3m9l_A	205	Hydrolase, haloacid dehalogenase-like family; HAD	99.61
2wm8_A	187	MDP-1, magnesium-dependent phosphatase 1; haloacid	99.61
2pib_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	99.6
1zrn_A	232	L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseud	99.6
2no4_A	240	(S)-2-haloacid dehalogenase IVA; HAD superfamily,	99.6
2nyv_A	222	Pgpase, PGP, phosphoglycolate phosphatase; structu	99.6
3e58_A	214	Putative beta-phosphoglucomutase; structu genomics	99.6
2p9j_A	162	Hypothetical protein AQ2171; secsg, riken, PSI, st	99.59
3um9_A	230	Haloacid dehalogenase, type II; haloacid dehalogen	99.59
4ex6_A	237	ALNB; modified rossman fold, phosphatase, magnesiu	99.58
3mc1_A	226	Predicted phosphatase, HAD family; PSI2, NYSGXRC,	99.58
3umb_A	233	Dehalogenase-like hydrolase; 2.20A {Ralstonia sola	99.58
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	99.58
2gfh_A	260	Haloacid dehalogenase-like hydrolase domain conta;	99.58
2w43_A	201	Hypothetical 2-haloalkanoic acid dehalogenase; hyd	99.56
3s6j_A	233	Hydrolase, haloacid dehalogenase-like family; stru	99.56
3nas_A	233	Beta-PGM, beta-phosphoglucomutase; PSI, structural	99.55
3cnh_A	200	Hydrolase family protein; NP_295428.1, predicted h	99.55
2hsz_A	243	Novel predicted phosphatase; structural genomics,	99.55
3sd7_A	240	Putative phosphatase; structural genomics, haloaci	99.55
1qq5_A	253	Protein (L-2-haloacid dehalogenase); hydrolase; 1.	99.55
3iru_A	277	Phoshonoacetaldehyde hydrolase like protein; phosp	99.54
3k1z_A	263	Haloacid dehalogenase-like hydrolase domain-conta	99.54
3smv_A	240	S-(-)-azetidine-2-carboxylate hydrolase; haloacid	99.53
2hdo_A	209	Phosphoglycolate phosphatase; NP_784602.1, structu	99.53
3dv9_A	247	Beta-phosphoglucomutase; structural genomics, APC6	99.53
3i28_A	555	Epoxide hydrolase 2; aromatic hydrocarbons catabol	99.52
2i6x_A	211	Hydrolase, haloacid dehalogenase-like family; HAD	99.52
3e8m_A	164	Acylneuraminate cytidylyltransferase; 2-keto-3-deo	99.51
3m1y_A	217	Phosphoserine phosphatase (SERB); NYSGXRC, PSI II,	99.51
3qnm_A	240	Haloacid dehalogenase-like hydrolase; structural g	99.51
3ed5_A	238	YFNB; APC60080, bacillus subtilis subsp. subtilis	99.51
3u26_A	234	PF00702 domain protein; structural genomics, PSI-b	99.51
4eek_A	259	Beta-phosphoglucomutase-related protein; hydrolase	99.51
4dcc_A	229	Putative haloacid dehalogenase-like hydrolase; mag	99.51
3qxg_A	243	Inorganic pyrophosphatase; hydrolase, magnesium bi	99.51
2fi1_A	190	Hydrolase, haloacid dehalogenase-like family; stru	99.5
3l5k_A	250	Protein GS1, haloacid dehalogenase-like hydrolase	99.5
1k1e_A	180	Deoxy-D-mannose-octulosonate 8-phosphate phosphat;	99.48
2b0c_A	206	Putative phosphatase; alpha-D-glucose-1-phosphate,	99.48
3nuq_A	282	Protein SSM1, putative nucleotide phosphatase; sup	99.48
3mmz_A	176	Putative HAD family hydrolase; structural genomics	99.48
2zg6_A	220	Putative uncharacterized protein ST2620, probable	99.46
4eze_A	317	Haloacid dehalogenase-like hydrolase; magnesium bi	99.46
3n07_A	195	3-deoxy-D-manno-octulosonate 8-phosphate phosphat;	99.46
3umg_A	254	Haloacid dehalogenase; defluorinase, hydrolase; 2.	99.46
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.45
3umc_A	254	Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeru	99.45
3vay_A	230	HAD-superfamily hydrolase; rossmann fold, haloacid	99.45
2fea_A	236	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	99.45
2r8e_A	188	3-deoxy-D-manno-octulosonate 8-phosphate phosphata	99.44
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	99.44
2go7_A	207	Hydrolase, haloacid dehalogenase-like family; stru	99.44
1yv9_A	264	Hydrolase, haloacid dehalogenase family; hypotheti	99.43
1te2_A	226	Putative phosphatase; structural genomics, phospha	99.43
3d6j_A	225	Putative haloacid dehalogenase-like hydrolase; str	99.43
3n1u_A	191	Hydrolase, HAD superfamily, subfamily III A; struc	99.42
2b82_A	211	APHA, class B acid phosphatase; DDDD acid phosphat	99.41
2wf7_A	221	Beta-PGM, beta-phosphoglucomutase; transition stat	99.41
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	99.41
2om6_A	235	Probable phosphoserine phosphatase; rossmann fold,	99.41
2hi0_A	240	Putative phosphoglycolate phosphatase; YP_619066.1	99.4
2ho4_A	259	Haloacid dehalogenase-like hydrolase domain contai	99.4
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	99.39
3ddh_A	234	Putative haloacid dehalogenase-like family hydrol;	99.39
2qlt_A	275	(DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, sac	99.38
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	99.38
3mn1_A	189	Probable YRBI family phosphatase; structural genom	99.38
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	99.38
2hcf_A	234	Hydrolase, haloacid dehalogenase-like family; NP_6	99.37
3ij5_A	211	3-deoxy-D-manno-octulosonate 8-phosphate phosphat;	99.37
1swv_A	267	Phosphonoacetaldehyde hydrolase; HAD enzyme superf	99.36
1vjr_A	271	4-nitrophenylphosphatase; TM1742, structural genom	99.35
1nnl_A	225	L-3-phosphoserine phosphatase; PSP, HPSP, phospho-	99.35
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	99.35
1yns_A	261	E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo	99.34
1rku_A	206	Homoserine kinase; phosphoserine phosphatase, phos	99.34
3fvv_A	232	Uncharacterized protein; unknown function, structu	99.34
2g80_A	253	Protein UTR4; YEL038W, UTR4 protein (unknown trans	99.34
3epr_A	264	Hydrolase, haloacid dehalogenase-like family; stru	99.34
2oyc_A	306	PLP phosphatase, pyridoxal phosphate phosphatase;	99.32
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	99.32
3kd3_A	219	Phosphoserine phosphohydrolase-like protein; csgid	99.31
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	99.31
3nvb_A	387	Uncharacterized protein; protein FKBH, protein fkb	99.31
2vli_A	183	Antibiotic resistance protein; transferase, tunica	99.3
2pke_A	251	Haloacid delahogenase-like family hydrolase; NP_63	99.29
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	99.27
3ewi_A	168	N-acylneuraminate cytidylyltransferase; beta barre	99.26
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	99.26
3qgm_A	268	P-nitrophenyl phosphatase (PHO2); structural genom	99.25
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	99.25
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	99.24
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	99.24
3pdw_A	266	Uncharacterized hydrolase YUTF; structural genomic	99.24
2i33_A	258	Acid phosphatase; HAD superfamily, hydrolase; 1.57	99.24
2hx1_A	284	Predicted sugar phosphatases of the HAD superfamil	99.24
1qyi_A	384	ZR25, hypothetical protein; structural genomics, P	99.23
2hoq_A	241	Putative HAD-hydrolase PH1655; haloacid dehalogena	99.23
2fdr_A	229	Conserved hypothetical protein; SAD, structural ge	99.22
1l7m_A	211	Phosphoserine phosphatase; rossmann fold, four-hel	99.22
2p11_A	231	Hypothetical protein; putative haloacid dehalogena	99.2
2i7d_A	193	5'(3')-deoxyribonucleotidase, cytosolic type; hydr	99.2
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	99.2
1zjj_A	263	Hypothetical protein PH1952; alpha/beta hydrolase	99.2
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	99.18
2x4d_A	271	HLHPP, phospholysine phosphohistidine inorganic py	99.17
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	99.16
3kc2_A	352	Uncharacterized protein YKR070W; HAD-like, mitocho	99.13
3n28_A	335	Phosphoserine phosphatase; HAD family hydrolase, s	99.13
2c4n_A	250	Protein NAGD; nucleotide phosphatase, HAD superfam	99.13
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	99.12
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	99.11
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	99.1
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	99.1
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	99.1
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	99.1
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	99.1
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	99.1
2hhl_A	195	CTD small phosphatase-like protein; CTD phosphatas	99.09
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	99.07
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	99.06
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	99.06
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	99.05
2ght_A	181	Carboxy-terminal domain RNA polymerase II polypept	99.05
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	99.03
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	99.02
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	99.01
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	99.01
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	99.01
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	98.99
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	98.97
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	98.96
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	98.94
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	98.94
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.94
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	98.94
4ap9_A	201	Phosphoserine phosphatase; hydrolase, haloacid deh	98.93
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	98.92
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.91
3skx_A	280	Copper-exporting P-type ATPase B; P1B-ATPase, ATP	98.91
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	98.89
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	98.86
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	98.86
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	98.84
3gyg_A	289	NTD biosynthesis operon putative hydrolase NTDB; P	98.84
1wr8_A	231	Phosphoglycolate phosphatase; alpha / beta core do	98.82
3fzq_A	274	Putative hydrolase; YP_001086940.1, putative haloa	98.82
1q92_A	197	5(3)-deoxyribonucleotidase; alpha-beta rossman fol	98.81
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	98.8
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	98.78
1via_A	175	Shikimate kinase; structural genomics, transferase	98.78
2obb_A	142	Hypothetical protein; structural genomics, PSI-2,	98.76
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	98.72
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	98.69
1l6r_A	227	Hypothetical protein TA0175; structural genomics,	98.69
4dw8_A	279	Haloacid dehalogenase-like hydrolase; HAD, putativ	98.69
3mpo_A	279	Predicted hydrolase of the HAD superfamily; SGX, P	98.69
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	98.68
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.66
3ocu_A	262	Lipoprotein E; hydrolase, outer membrane; HET: NMN	98.66
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	98.65
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	98.65
3r4c_A	268	Hydrolase, haloacid dehalogenase-like hydrolase; h	98.65
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	98.64
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	98.63
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	98.62
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	98.62
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.61
3dnp_A	290	Stress response protein YHAX; structural PSI-2, pr	98.58
3l7y_A	304	Putative uncharacterized protein SMU.1108C; hydrol	98.58
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	98.57
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	98.57
3a1c_A	287	Probable copper-exporting P-type ATPase A; ATP-bin	98.55
3pct_A	260	Class C acid phosphatase; hydrolase, outer membran	98.54
3pgv_A	285	Haloacid dehalogenase-like hydrolase; structural g	98.53
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	98.52
3dao_A	283	Putative phosphatse; structural genomics, joint ce	98.5
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	98.49
2rbk_A	261	Putative uncharacterized protein; HAD-like phospha	98.49
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	98.48
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	98.46
3zx4_A	259	MPGP, mannosyl-3-phosphoglycerate phosphatase; hyd	98.45
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	98.45
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	98.43
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	98.39
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	98.38
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	98.36
3bwv_A	180	Putative 5'(3')-deoxyribonucleotidase; NP_764060.1	98.36
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.35
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.35
2pq0_A	258	Hypothetical conserved protein GK1056; hyopthetica	98.32
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	98.29
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.27
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	98.26
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	98.25
1rlm_A	271	Phosphatase; HAD family, rossman fold, hydrolase;	98.25
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	98.24
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	98.21
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	98.2
2yj3_A	263	Copper-transporting ATPase; hydrolase, P-type ATPa	97.51
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.19
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	98.18
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	98.17
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	98.16
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.15
4i1u_A	210	Dephospho-COA kinase; structural genomics, niaid,	98.08
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	98.07
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	98.03
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	98.02
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	98.01
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.01
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.99
1xpj_A	126	Hypothetical protein; structural genomics, MCSG, p	97.97
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.95
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	97.94
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.93
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.93
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	97.91
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.9
3hdt_A	223	Putative kinase; structura genomics, PSI-2, protei	97.9
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.89
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.84
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.79
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.79
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.78
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.76
3qle_A	204	TIM50P; chaperone, mitochondrion, preprotein trans	97.73
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.7
2jc9_A	555	Cytosolic purine 5'-nucleotidase; cytosolic 5-prim	97.66
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	97.56
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.49
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.49
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	97.49
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	97.48
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.47
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	97.46
2zos_A	249	MPGP, mannosyl-3-phosphoglycerate phosphatase; hal	97.44
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	97.42
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	97.41
3ef0_A	372	RNA polymerase II subunit A C-terminal domain phos	97.4
1xvi_A	275	MPGP, YEDP, putative mannosyl-3-phosphoglycerate p	97.36
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	97.33
1nrw_A	288	Hypothetical protein, haloacid dehalogenase-like h	97.33
2chg_A	226	Replication factor C small subunit; DNA-binding pr	97.3
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	97.29
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.29
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.24
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	97.21
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.2
3f9r_A	246	Phosphomannomutase; trypanosome glycobiology struc	97.19
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	97.11
1nf2_A	268	Phosphatase; structural proteomics, HAD NEW fold,	97.1
3ch4_B	202	Pmkase, phosphomevalonate kinase; parallel beta-sh	97.1
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	97.09
3co5_A	143	Putative two-component system transcriptional RES	97.08
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	97.07
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.06
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	97.05
1rkq_A	282	Hypothetical protein YIDA; two domain structure wi	97.05
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	97.03
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	97.01
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	97.0
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	97.0
2b30_A	301	Pvivax hypothetical protein; SGPP, structural geno	96.99
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.98
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.98
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.98
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.96
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.95
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.92
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	96.9
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.9
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	96.88
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	96.88
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.87
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.86
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	96.86
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.81
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	96.79
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.78
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	96.75
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.73
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	96.73
1u02_A	239	Trehalose-6-phosphate phosphatase related protein;	96.72
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	96.72
2amy_A	246	PMM 2, phosphomannomutase 2; HS.459855, HS.313504,	96.69
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.68
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	96.66
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	96.66
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.65
3pvs_A	447	Replication-associated recombination protein A; ma	96.64
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.64
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.63
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.63
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	96.62
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.58
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.58
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.57
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.56
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.56
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.55
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.54
2fue_A	262	PMM 1, PMMH-22, phosphomannomutase 1; enzyme-produ	96.51
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.49
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.48
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.47
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	96.46
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.44
1p6x_A	334	Thymidine kinase; P-loop, LID, transferase; HET: T	96.44
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	96.43
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.42
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.39
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.39
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	96.38
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.37
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.34
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	96.33
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.33
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.32
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.31
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.29
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.29
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	96.27
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.25
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.25
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	96.24
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.22
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.21
2xxa_A	433	Signal recognition particle protein; protein trans	96.19
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.19
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	96.17
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	96.17
2chq_A	319	Replication factor C small subunit; DNA-binding pr	96.17
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.17
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.14
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.14
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.14
2og2_A	359	Putative signal recognition particle receptor; nuc	96.12
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.1
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.08
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.08
3bos_A	242	Putative DNA replication factor; P-loop containing	96.07
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.07
1tue_A	212	Replication protein E1; helicase, replication, E1E	96.06
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.05
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	96.04
3czq_A	304	Putative polyphosphate kinase 2; structural genomi	96.04
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	96.04
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	96.03
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.0
2r2a_A	199	Uncharacterized protein; zonular occludens toxin,	95.97
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.97
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	95.96
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	95.96
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	95.95
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	95.95
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.95
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	95.94
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	95.93
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	95.93
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	95.93
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.91
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	95.91
1dek_A	241	Deoxynucleoside monophosphate kinase; transferase,	95.9
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	95.89
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.87
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	95.85
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.84
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	95.84
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	95.84
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	95.84
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	95.82
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	95.82
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	95.77
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	95.77
1u94_A	356	RECA protein, recombinase A; homologous recombinat	95.77
2gno_A	305	DNA polymerase III, gamma subunit-related protein;	95.76
1s2o_A	244	SPP, sucrose-phosphatase; phosphohydrolase, HAD su	95.72
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	95.69
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	95.65
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	95.64
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	95.6
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	95.58
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	95.58
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.58
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	95.56
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	95.52
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	95.45
1a5t_A	334	Delta prime, HOLB; zinc finger, DNA replication; 2	95.45
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.43
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	95.42
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	95.42
4g63_A	470	Cytosolic IMP-GMP specific 5'-nucleotidase; struct	95.41
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	95.41
1xp8_A	366	RECA protein, recombinase A; recombination, radior	95.4
2r44_A	331	Uncharacterized protein; putative ATPase, structur	95.38
2z43_A	324	DNA repair and recombination protein RADA; archaea	95.38
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	95.37
4as2_A	327	Phosphorylcholine phosphatase; hydrolase, HAD supe	95.34
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	95.33
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	95.33
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	95.29
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	95.29
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	95.24
2eyu_A	261	Twitching motility protein PILT; pilus retraction	95.23
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	95.22
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	95.18
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	95.17
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	95.17
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	95.1
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	95.08
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.07
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	95.05
2r6a_A	454	DNAB helicase, replicative helicase; replication,	95.04
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	95.03
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	95.02
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	94.98
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	94.98
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	94.98
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	94.93
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	94.87
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	94.86
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	94.86
3j08_A	645	COPA, copper-exporting P-type ATPase A; copper tra	94.82
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	94.81
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	94.81
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	94.79
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	94.77
3kta_A	182	Chromosome segregation protein SMC; structural mai	94.77
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	94.75
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	94.69
1b0u_A	262	Histidine permease; ABC transporter, transport pro	94.69
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	94.69
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	94.69
1ji0_A	240	ABC transporter; ATP binding protein, structural g	94.68
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	94.67
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	94.66
1g6h_A	257	High-affinity branched-chain amino acid transport	94.65
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	94.64
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	94.63
1sgw_A	214	Putative ABC transporter; structural genomics, P p	94.62
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	94.62
4fe3_A	297	Cytosolic 5'-nucleotidase 3; substrate complex, HA	94.6
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	94.59
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	94.59
2qgz_A	308	Helicase loader, putative primosome component; str	94.58
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	94.56
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	94.51
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	94.5
2ghi_A	260	Transport protein; multidrug resistance protein, M	94.5
1knx_A	312	Probable HPR(Ser) kinase/phosphatase; HPR kinase,	94.49
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	94.49
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	94.48
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	94.47
3nbx_X	500	ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu	94.46
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	94.44
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	94.39
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	94.39
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	94.35
1q57_A	503	DNA primase/helicase; dntpase, DNA replication, tr	94.34
4gxt_A	385	A conserved functionally unknown protein; structur	94.32
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	94.3
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	94.27
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	94.26
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	94.26
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	94.24
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	94.23
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	94.23
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	94.2
2ewv_A	372	Twitching motility protein PILT; pilus retraction	94.2
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	94.18
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	94.17
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	94.15
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	94.13
2wji_A	165	Ferrous iron transport protein B homolog; membrane	94.1
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	94.06
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	94.03
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	94.0
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	93.98
2ged_A	193	SR-beta, signal recognition particle receptor beta	93.97
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	93.96
2fna_A	357	Conserved hypothetical protein; structural genomic	93.95
3rfu_A	736	Copper efflux ATPase; alpha helical, CPC, CXXC, AT	93.92
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	93.92
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	93.91
2hf9_A	226	Probable hydrogenase nickel incorporation protein	93.88

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=100.00  E-value=7.1e-60  Score=470.59  Aligned_cols=316  Identities=48%  Similarity=0.818  Sum_probs=287.5

Q ss_pred             CCcEEecCceEEEEecCCCCCCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCc
Q psy4598           3 GSWDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAI   82 (369)
Q Consensus         3 ~~W~~~~~~~~~~~~~~~~~~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi   82 (369)
                      ..|+.++  ++++|+.+.+..+.|+++||+||||+.+.+|..|.....+|.+++||+.++|+.|+++||+++|+|||+|+
T Consensus        38 ~~W~~~~--~~~~~~~~~~~~~~k~v~fD~DGTL~~~~~~~~~~~~~~~~~~~~pgv~e~L~~L~~~G~~l~IvTN~~gi  115 (416)
T 3zvl_A           38 LGWESLK--KLLVFTASGVKPQGKVAAFDLDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGYKLVIFTNQMGI  115 (416)
T ss_dssp             CEEEEET--TEEEEECTTCCCCSSEEEECSBTTTEECSSCSSSCSSTTCCEESCTTHHHHHHHHHHTTCEEEEEEECHHH
T ss_pred             cCceecC--cEEEecCCCCCCCCeEEEEeCCCCccccCCCccCCCCHHHhhhhcccHHHHHHHHHHCCCeEEEEeCCccc
Confidence            4599998  47999999999999999999999999999888999999999989999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCC-C
Q psy4598          83 GRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPK-K  161 (369)
Q Consensus        83 ~~~~~~~~~~~~~i~~~l~~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~-~  161 (369)
                      ++|+++...+..++..+++.+|++|++++|++++.++||+|+||+.++++++.++++++++|+||||++||+++|.++ +
T Consensus       116 ~~g~~~~~~~~~~~~~~l~~lgl~fd~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~v~~~~~l~VGDs~gr~~~~~~~~~  195 (416)
T 3zvl_A          116 GRGKLPAEVFKGKVEAVLEKLGVPFQVLVATHAGLNRKPVSGMWDHLQEQANEGIPISVEDSVFVGDAAGRLANWAPGRK  195 (416)
T ss_dssp             HTTSSCHHHHHHHHHHHHHHHTSCCEEEEECSSSTTSTTSSHHHHHHHHHSSTTCCCCGGGCEEECSCSCBCTTSSTTCC
T ss_pred             cCCCCCHHHHHHHHHHHHHHcCCCEEEEEECCCCCCCCCCHHHHHHHHHHhCCCCCCCHHHeEEEECCCCCccccccccc
Confidence            999999999999999999999999999999999999999999999999997655569999999999999999999984 6


Q ss_pred             CCCCCcccHHHHHhCCCCccCchhhccCCCCCCCCCCCCCCcchhccccccCCCCCCCCCCceEEEEEcCCCCCcchhhh
Q psy4598         162 KKDFACTDHLFAFNLNLAFFTPEQIFLNEKAPDFPNLPTFKPREVYQKAQSQTIPNIPHDKKQVLIMIGSQGSGKSSFVS  241 (369)
Q Consensus       162 ~~d~s~~D~~~A~n~Gi~f~~pe~~f~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~i~v~~g~~~~gks~~~~  241 (369)
                      |||||++|+++|+|+||+|++||+||++++..+| .+|+|+|+.+....+.+.                 |.++      
T Consensus       196 ~~d~s~~Di~~A~~aGi~f~~pe~~f~~~~~~~~-~~~~f~p~~~~~~~~~~~-----------------p~~~------  251 (416)
T 3zvl_A          196 KKDFSCADRLFALNVGLPFATPEEFFLKWPAARF-ELPAFDPRTISSAGPLYL-----------------PESS------  251 (416)
T ss_dssp             SCCSCCHHHHHHHHHTCCEECHHHHHSCCCCCCB-CCCSCCGGGCCSCSCSSB-----------------STTS------
T ss_pred             ccCCChhhHHHHHHcCCcccCcHHhhCCCCcCcc-ccCCCChhhhcccccccC-----------------CCcc------
Confidence            9999999999999999999999999999998888 789999988754332210                 0000      


Q ss_pred             hccCCCcccccccccccchhhhhhhccccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchhHHHHHHHHHHHHh
Q psy4598         242 TYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALD  321 (369)
Q Consensus       242 ~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~~~~~~~~~~~~l~  321 (369)
                                              ....+.+.+|+|+|+|||||||+++.|++.+++.+|+.|.++.|+.+...+..++.
T Consensus       252 ------------------------~~~~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~~~~~~~~~~~~l~  307 (416)
T 3zvl_A          252 ------------------------SLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALR  307 (416)
T ss_dssp             ------------------------CSCCSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSCSHHHHHHHHHHHHH
T ss_pred             ------------------------ccCCCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHHHHHHHHHHHHHHHh
Confidence                                    01123457899999999999999999999999999999999999999999999999


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         322 SGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       322 ~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      .|.+||+|+++.....|..++++++++++.+.+|++++|.+++++|+
T Consensus       308 ~g~~vIiD~~~~~~~~r~~~~~~~~~~~~~~~~v~l~~~~e~l~~R~  354 (416)
T 3zvl_A          308 QGKRVVIDNTNPDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNN  354 (416)
T ss_dssp             TTCCEEEESCCCSHHHHHHHHHHHHHHTCCEEEEEECCCHHHHHHHH
T ss_pred             cCCcEEEeCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999996

>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*

Probab=99.90  E-value=1.4e-23  Score=184.42  Aligned_cols=140  Identities=27%  Similarity=0.324  Sum_probs=115.6

Q ss_pred             CCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHH---HHHHHH
Q psy4598          23 NSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQ---AKAEKI   99 (369)
Q Consensus        23 ~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~---~~i~~~   99 (369)
                      +..|+++||+||||+.+.++..+.....++. ++|++.+.|++|+++||+++|+||++++.+|+++...+.   ..+..+
T Consensus        12 ~~~k~~~~D~Dgtl~~~~~~~~~~~~~~~~~-~~pg~~e~L~~L~~~G~~l~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~   90 (176)
T 2fpr_A           12 SSQKYLFIDRDGTLISEPPSDFQVDRFDKLA-FEPGVIPQLLKLQKAGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQI   90 (176)
T ss_dssp             -CCEEEEECSBTTTBCCC--CCCCCSGGGCC-BCTTHHHHHHHHHHTTEEEEEEEECTTTTBTTBCHHHHHHHHHHHHHH
T ss_pred             CcCcEEEEeCCCCeEcCCCCCcCcCCHHHCc-CCccHHHHHHHHHHCCCEEEEEECCccccccccchHhhhhhHHHHHHH
Confidence            4679999999999998876544455555665 799999999999999999999999999999999888763   467788


Q ss_pred             HHHcCCCeEEE-Ee----cCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHH
Q psy4598         100 IKSLNVPVQMF-VA----TQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAF  174 (369)
Q Consensus       100 l~~l~i~~~~~-~~----~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~  174 (369)
                      ++.+|++|+.+ ++    .++..++||+|+||+.+++++    ++++++++||||+.                .|+++|+
T Consensus        91 l~~~gl~fd~v~~s~~~~~~~~~~~KP~p~~~~~~~~~~----gi~~~~~l~VGD~~----------------~Di~~A~  150 (176)
T 2fpr_A           91 FTSQGVQFDEVLICPHLPADECDCRKPKVKLVERYLAEQ----AMDRANSYVIGDRA----------------TDIQLAE  150 (176)
T ss_dssp             HHHTTCCEEEEEEECCCGGGCCSSSTTSCGGGGGGC--------CCGGGCEEEESSH----------------HHHHHHH
T ss_pred             HHHcCCCeeEEEEcCCCCcccccccCCCHHHHHHHHHHc----CCCHHHEEEEcCCH----------------HHHHHHH
Confidence            99999998755 45    267789999999999999885    78999999999999                8999999


Q ss_pred             hCCCCccCc
Q psy4598         175 NLNLAFFTP  183 (369)
Q Consensus       175 n~Gi~f~~p  183 (369)
                      ++||+++..
T Consensus       151 ~aG~~~i~v  159 (176)
T 2fpr_A          151 NMGINGLRY  159 (176)
T ss_dssp             HHTSEEEEC
T ss_pred             HcCCeEEEE
Confidence            999998643

>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}

Probab=99.89  E-value=8.9e-23  Score=178.32  Aligned_cols=136  Identities=20%  Similarity=0.325  Sum_probs=117.3

Q ss_pred             ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHH---HHHHHHHH
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQ---AKAEKIIK  101 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~---~~i~~~l~  101 (369)
                      .|+++||+||||+.+.  ..|.....++. ++|++.++|++|+++|++++|+||++.++++.++...+.   +.+..+++
T Consensus         1 ~k~v~~D~DGtL~~~~--~~~~~~~~~~~-~~~g~~~~l~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~   77 (179)
T 3l8h_A            1 MKLIILDRDGVVNQDS--DAFVKSPDEWI-ALPGSLQAIARLTQADWTVVLATNQSGLARGLFDTATLNAIHDKMHRALA   77 (179)
T ss_dssp             CCEEEECSBTTTBCCC--TTCCCSGGGCC-BCTTHHHHHHHHHHTTCEEEEEEECTTTTTTSSCHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEcCCCccccCC--CccCCCHHHce-ECcCHHHHHHHHHHCCCEEEEEECCCccccCcCCHHHHHHHHHHHHHHHH
Confidence            3789999999999764  35888888888 699999999999999999999999999999998887766   45677788


Q ss_pred             HcCCCeEE-EEe----cCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhC
Q psy4598         102 SLNVPVQM-FVA----TQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNL  176 (369)
Q Consensus       102 ~l~i~~~~-~~~----~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~  176 (369)
                      .+|.+|+. +.+    .+...++||+|++|+.+++++    ++++++++||||+.                +|+++|+++
T Consensus        78 ~~g~~~~~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~----~~~~~~~~~vGD~~----------------~Di~~a~~a  137 (179)
T 3l8h_A           78 QMGGVVDAIFMCPHGPDDGCACRKPLPGMYRDIARRY----DVDLAGVPAVGDSL----------------RDLQAAAQA  137 (179)
T ss_dssp             HTTCCCCEEEEECCCTTSCCSSSTTSSHHHHHHHHHH----TCCCTTCEEEESSH----------------HHHHHHHHH
T ss_pred             hCCCceeEEEEcCCCCCCCCCCCCCCHHHHHHHHHHc----CCCHHHEEEECCCH----------------HHHHHHHHC
Confidence            99976764 333    356678999999999999996    79999999999998                899999999


Q ss_pred             CCCccCc
Q psy4598         177 NLAFFTP  183 (369)
Q Consensus       177 Gi~f~~p  183 (369)
                      |++++..
T Consensus       138 G~~~i~v  144 (179)
T 3l8h_A          138 GCAPWLV  144 (179)
T ss_dssp             TCEEEEE
T ss_pred             CCcEEEE
Confidence            9998643

>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*

Probab=99.84  E-value=7.5e-21  Score=171.50  Aligned_cols=146  Identities=23%  Similarity=0.343  Sum_probs=114.2

Q ss_pred             EEEecCCCCCCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHH-
Q psy4598          14 LVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDF-   92 (369)
Q Consensus        14 ~~~~~~~~~~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~-   92 (369)
                      ++-+-.-...+.|+++||+||||+...   .|.....++. ++|++.++|++|+++|++++|+||++..+++.++.+.+ 
T Consensus        14 ~~~~~~~m~~~~k~v~~D~DGTL~~~~---~~~~~~~~~~-~~pg~~e~L~~L~~~G~~~~ivTn~~~~~~~~~~~~~~~   89 (211)
T 2gmw_A           14 LVPRGSHMAKSVPAIFLDRDGTINVDH---GYVHEIDNFE-FIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFE   89 (211)
T ss_dssp             ----------CBCEEEECSBTTTBCCC---SSCCSGGGCC-BCTTHHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHH
T ss_pred             ccccchhhhhcCCEEEEcCCCCeECCC---CcccCcccCc-CCcCHHHHHHHHHHCCCeEEEEECcCCcCCCccCHHHHH
Confidence            555544445567899999999999764   4777776666 69999999999999999999999998776677766665 


Q ss_pred             --HHHHHHHHHHcCCCeE-EEEec-----------CCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccC
Q psy4598          93 --QAKAEKIIKSLNVPVQ-MFVAT-----------QYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWA  158 (369)
Q Consensus        93 --~~~i~~~l~~l~i~~~-~~~~~-----------~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~  158 (369)
                        ...+..+++.+|+.|+ +++++           +...++||+|.+|+.+++++    ++++++++||||+.       
T Consensus        90 ~~~~~~~~~l~~~gl~f~~~~~~~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~l----gi~~~~~~~VGD~~-------  158 (211)
T 2gmw_A           90 TLTEWMDWSLADRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSARDYL----HIDMAASYMVGDKL-------  158 (211)
T ss_dssp             HHHHHHHHHHHHTTCCCSEEEEECCBTTCSSGGGBSCCSSSTTSCHHHHHHHHHH----TBCGGGCEEEESSH-------
T ss_pred             HHHHHHHHHHHHcCCceEEEEECCcCCCCcccccCccCcCCCCCHHHHHHHHHHc----CCCHHHEEEEcCCH-------
Confidence              3456778889999875 45553           24667999999999999986    79999999999999       


Q ss_pred             CCCCCCCCcccHHHHHhCCCCc-cCc
Q psy4598         159 PKKKKDFACTDHLFAFNLNLAF-FTP  183 (369)
Q Consensus       159 ~~~~~d~s~~D~~~A~n~Gi~f-~~p  183 (369)
                               +|+.+|+++|+++ +..
T Consensus       159 ---------~Di~~a~~aG~~~~i~v  175 (211)
T 2gmw_A          159 ---------EDMQAAVAANVGTKVLV  175 (211)
T ss_dssp             ---------HHHHHHHHTTCSEEEEE
T ss_pred             ---------HHHHHHHHCCCceEEEE
Confidence                     8999999999998 654

>2o2x_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP: c.108.1.19

Probab=99.81  E-value=1e-19  Score=164.42  Aligned_cols=139  Identities=22%  Similarity=0.289  Sum_probs=116.0

Q ss_pred             CCCCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHH---HHHH
Q psy4598          21 VCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQ---AKAE   97 (369)
Q Consensus        21 ~~~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~---~~i~   97 (369)
                      ...+.|.++||+||||+...   .|.....++. ++|++.++|++|+++|++++|+||++..+++.++.+.+.   ..+.
T Consensus        27 ~~~~~k~i~~D~DGtl~~~~---~y~~~~~~~~-~~~g~~e~L~~L~~~G~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~  102 (218)
T 2o2x_A           27 FPPHLPALFLDRDGTINVDT---DYPSDPAEIV-LRPQMLPAIATANRAGIPVVVVTNQSGIARGYFGWSAFAAVNGRVL  102 (218)
T ss_dssp             CCSSCCCEEECSBTTTBCCC---SCTTCGGGCC-BCGGGHHHHHHHHHHTCCEEEEEECHHHHTTSCCHHHHHHHHHHHH
T ss_pred             hhhcCCEEEEeCCCCcCCCC---cccCCcccCe-ECcCHHHHHHHHHHCCCEEEEEcCcCCCCcccccHHHHHHHHHHHH
Confidence            34567999999999998653   5777777776 699999999999999999999999987777777665443   4567


Q ss_pred             HHHHHcCCCeE-EEEec-----------CCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCC
Q psy4598          98 KIIKSLNVPVQ-MFVAT-----------QYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDF  165 (369)
Q Consensus        98 ~~l~~l~i~~~-~~~~~-----------~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~  165 (369)
                      .+++.+|+.|+ ++++.           +...++||+|.||+.+++++    ++++++++||||+.              
T Consensus       103 ~~l~~~gl~~~~~~~~~~~~~g~~~~~~~~~~~~KP~~~~~~~~~~~~----~i~~~~~~~VGD~~--------------  164 (218)
T 2o2x_A          103 ELLREEGVFVDMVLACAYHEAGVGPLAIPDHPMRKPNPGMLVEAGKRL----ALDLQRSLIVGDKL--------------  164 (218)
T ss_dssp             HHHHHTTCCCSEEEEECCCTTCCSTTCCSSCTTSTTSCHHHHHHHHHH----TCCGGGCEEEESSH--------------
T ss_pred             HHHHHcCCceeeEEEeecCCCCceeecccCCccCCCCHHHHHHHHHHc----CCCHHHEEEEeCCH--------------
Confidence            78899998765 45565           45678999999999999986    79999999999999              


Q ss_pred             CcccHHHHHhCCCCc-cCc
Q psy4598         166 ACTDHLFAFNLNLAF-FTP  183 (369)
Q Consensus       166 s~~D~~~A~n~Gi~f-~~p  183 (369)
                        +|+.+|+++|+++ +..
T Consensus       165 --~Di~~a~~aG~~~~i~v  181 (218)
T 2o2x_A          165 --ADMQAGKRAGLAQGWLV  181 (218)
T ss_dssp             --HHHHHHHHTTCSEEEEE
T ss_pred             --HHHHHHHHCCCCEeEEE
Confidence              8999999999998 653

>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}

Probab=99.80  E-value=4.4e-19  Score=156.89  Aligned_cols=129  Identities=16%  Similarity=0.234  Sum_probs=103.9

Q ss_pred             ceEEEEecCCceeecCCCCCCCCCcccc---ccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHH
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVDTHDW---KLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIK  101 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~---~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~  101 (369)
                      .|+++||+||||+.... ..|.....+.   ..++||+.+.|++|+++|++++|+||++..         ....+..+++
T Consensus         3 ik~vifD~DgtL~~~~~-~~y~~~~~~~~~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~---------~~~~~~~~l~   72 (189)
T 3ib6_A            3 LTHVIWDMGETLNTVPN-TRYDHHPLDTYPEVVLRKNAKETLEKVKQLGFKQAILSNTATS---------DTEVIKRVLT   72 (189)
T ss_dssp             CCEEEECTBTTTBCCCT-TSSCSSCGGGCTTCCBCTTHHHHHHHHHHTTCEEEEEECCSSC---------CHHHHHHHHH
T ss_pred             ceEEEEcCCCceeeccc-hhhhhHHHhccCCceeCcCHHHHHHHHHHCCCEEEEEECCCcc---------chHHHHHHHH
Confidence            58999999999987543 1233332221   347999999999999999999999996532         1234667788


Q ss_pred             HcCC--CeEEEEecCCC----CCCCCchhHHHHHHHHhcCCccccCCccEEeeCc-cccccccCCCCCCCCCcccHHHHH
Q psy4598         102 SLNV--PVQMFVATQYD----RYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDA-AGRAANWAPKKKKDFACTDHLFAF  174 (369)
Q Consensus       102 ~l~i--~~~~~~~~~~~----~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~-~gr~~~~~~~~~~d~s~~D~~~A~  174 (369)
                      .+|+  .|+.++++++.    .++||+|.+|+.+++++    ++++++++||||+ .                .|+.+|+
T Consensus        73 ~~gl~~~fd~i~~~~~~~~~~~~~KP~p~~~~~~~~~~----~~~~~~~l~VGD~~~----------------~Di~~A~  132 (189)
T 3ib6_A           73 NFGIIDYFDFIYASNSELQPGKMEKPDKTIFDFTLNAL----QIDKTEAVMVGNTFE----------------SDIIGAN  132 (189)
T ss_dssp             HTTCGGGEEEEEECCTTSSTTCCCTTSHHHHHHHHHHH----TCCGGGEEEEESBTT----------------TTHHHHH
T ss_pred             hcCchhheEEEEEccccccccCCCCcCHHHHHHHHHHc----CCCcccEEEECCCcH----------------HHHHHHH
Confidence            9998  48888888765    78999999999999996    7899999999999 6                8999999


Q ss_pred             hCCCCccCc
Q psy4598         175 NLNLAFFTP  183 (369)
Q Consensus       175 n~Gi~f~~p  183 (369)
                      ++|++++..
T Consensus       133 ~aG~~~i~v  141 (189)
T 3ib6_A          133 RAGIHAIWL  141 (189)
T ss_dssp             HTTCEEEEE
T ss_pred             HCCCeEEEE
Confidence            999998643

>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}

Probab=99.76  E-value=5.4e-19  Score=157.92  Aligned_cols=95  Identities=14%  Similarity=0.122  Sum_probs=84.7

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++||+.+.|+.|++.|++++|+||.+            ...+...++.+|+.  |+.+++++....+||+|.+|+.++++
T Consensus        85 ~~pg~~~~l~~L~~~g~~~~i~tn~~------------~~~~~~~l~~~~l~~~fd~~~~~~~~~~~KP~p~~~~~a~~~  152 (216)
T 3kbb_A           85 ENPGVREALEFVKSKRIKLALATSTP------------QREALERLRRLDLEKYFDVMVFGDQVKNGKPDPEIYLLVLER  152 (216)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEECSSC------------HHHHHHHHHHTTCGGGCSEEECGGGSSSCTTSTHHHHHHHHH
T ss_pred             cCccHHHHHHHHHHcCCCcccccCCc------------HHHHHHHHHhcCCCccccccccccccCCCcccHHHHHHHHHh
Confidence            57999999999999999999999943            23455667888884  89999999999999999999999999


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      +    +++|++|+||||+.                .|+++|+++||+++
T Consensus       153 l----g~~p~e~l~VgDs~----------------~Di~aA~~aG~~~i  181 (216)
T 3kbb_A          153 L----NVVPEKVVVFEDSK----------------SGVEAAKSAGIERI  181 (216)
T ss_dssp             H----TCCGGGEEEEECSH----------------HHHHHHHHTTCCCE
T ss_pred             h----CCCccceEEEecCH----------------HHHHHHHHcCCcEE
Confidence            6    79999999999998                89999999999985

>2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase, phosphonoacetaldehyde hydrolase, protein binding; HET: EPE; 1.90A {Pseudomonas syringae PV}

Probab=99.75  E-value=1.8e-18  Score=154.61  Aligned_cols=122  Identities=14%  Similarity=0.053  Sum_probs=93.4

Q ss_pred             CCceEEEEecCCceeecCCCCCCCCCccc-----cccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHH
Q psy4598          23 NSAKIASFDLDGTLITTKSGKVFPVDTHD-----WKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAE   97 (369)
Q Consensus        23 ~~~k~~~fDlDgTLi~~~sg~~~~~~~~d-----~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~   97 (369)
                      ...|+++||+||||+.-  +  +......     ...++||+.+.|+.|+++||+++|+||.+        ....    .
T Consensus         4 ~~~kav~fDlDGTL~d~--~--~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~g~~~~i~T~~~--------~~~~----~   67 (196)
T 2oda_A            4 PTFPALLFGLSGCLVDF--G--AQAATSDTPDDEHAQLTPGAQNALKALRDQGMPCAWIDELP--------EALS----T   67 (196)
T ss_dssp             -CCSCEEEETBTTTBCT--T--STTTSCSSCCGGGGSBCTTHHHHHHHHHHHTCCEEEECCSC--------HHHH----H
T ss_pred             CcCCEEEEcCCCceEec--c--ccccchhhcccccCCcCcCHHHHHHHHHHCCCEEEEEcCCh--------HHHH----H
Confidence            34689999999999852  1  2222111     12369999999999999999999999843        1111    1


Q ss_pred             HHHHHcCCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccC-CccEEeeCccccccccCCCCCCCCCcccHHHHHhC
Q psy4598          98 KIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDI-SQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNL  176 (369)
Q Consensus        98 ~~l~~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~-~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~  176 (369)
                      .++   +..|+.+++.++...+||+|.+|..+++++    ++++ ++|+||||+.                .|+++|+++
T Consensus        68 ~~~---~~~~d~v~~~~~~~~~KP~p~~~~~a~~~l----~~~~~~~~v~VGDs~----------------~Di~aA~~a  124 (196)
T 2oda_A           68 PLA---APVNDWMIAAPRPTAGWPQPDACWMALMAL----NVSQLEGCVLISGDP----------------RLLQSGLNA  124 (196)
T ss_dssp             HHH---TTTTTTCEECCCCSSCTTSTHHHHHHHHHT----TCSCSTTCEEEESCH----------------HHHHHHHHH
T ss_pred             Hhc---CccCCEEEECCcCCCCCCChHHHHHHHHHc----CCCCCccEEEEeCCH----------------HHHHHHHHC
Confidence            222   244677888888889999999999999986    6765 8999999999                899999999


Q ss_pred             CCCccCc
Q psy4598         177 NLAFFTP  183 (369)
Q Consensus       177 Gi~f~~p  183 (369)
                      ||.++..
T Consensus       125 G~~~i~v  131 (196)
T 2oda_A          125 GLWTIGL  131 (196)
T ss_dssp             TCEEEEE
T ss_pred             CCEEEEE
Confidence            9998643

>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}

Probab=99.71  E-value=1.8e-18  Score=143.21  Aligned_cols=113  Identities=15%  Similarity=0.077  Sum_probs=91.8

Q ss_pred             ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcC
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLN  104 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~  104 (369)
                      .|.++||+||||...             ..++|++.+.|++|+++|++++|+||++..        .    +..+++.+|
T Consensus         2 ~k~i~~D~DgtL~~~-------------~~~~~~~~~~l~~L~~~G~~~~i~S~~~~~--------~----~~~~l~~~~   56 (137)
T 2pr7_A            2 MRGLIVDYAGVLDGT-------------DEDQRRWRNLLAAAKKNGVGTVILSNDPGG--------L----GAAPIRELE   56 (137)
T ss_dssp             CCEEEECSTTTTSSC-------------HHHHHHHHHHHHHHHHTTCEEEEEECSCCG--------G----GGHHHHHHH
T ss_pred             CcEEEEeccceecCC-------------CccCccHHHHHHHHHHCCCEEEEEeCCCHH--------H----HHHHHHHCC
Confidence            378999999999321             237999999999999999999999996531        1    223344444


Q ss_pred             C--CeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         105 V--PVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       105 i--~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +  .|+.+++++....+||+|.+|+.+++++    ++++++++||||+.                .|+.+|+++|+.++.
T Consensus        57 l~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~~----~~~~~~~~~vgD~~----------------~di~~a~~~G~~~i~  116 (137)
T 2pr7_A           57 TNGVVDKVLLSGELGVEKPEEAAFQAAADAI----DLPMRDCVLVDDSI----------------LNVRGAVEAGLVGVY  116 (137)
T ss_dssp             HTTSSSEEEEHHHHSCCTTSHHHHHHHHHHT----TCCGGGEEEEESCH----------------HHHHHHHHHTCEEEE
T ss_pred             hHhhccEEEEeccCCCCCCCHHHHHHHHHHc----CCCcccEEEEcCCH----------------HHHHHHHHCCCEEEE
Confidence            3  4777777777778999999999999986    68999999999999                899999999998853

>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli}

Probab=99.67  E-value=5e-17  Score=149.04  Aligned_cols=96  Identities=11%  Similarity=0.051  Sum_probs=84.2

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++||+.+.|+.|+++|++++++||..              ....+++.+|+  +|+.+++.++...+||+|.+|..++++
T Consensus        96 ~~pg~~~ll~~L~~~g~~i~i~t~~~--------------~~~~~l~~~gl~~~fd~i~~~~~~~~~KP~p~~~~~a~~~  161 (243)
T 4g9b_A           96 VLPGIRSLLADLRAQQISVGLASVSL--------------NAPTILAALELREFFTFCADASQLKNSKPDPEIFLAACAG  161 (243)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEECCCCT--------------THHHHHHHTTCGGGCSEECCGGGCSSCTTSTHHHHHHHHH
T ss_pred             ccccHHHHHHhhhcccccceeccccc--------------chhhhhhhhhhccccccccccccccCCCCcHHHHHHHHHH
Confidence            57999999999999999999999942              12345778888  488899999999999999999999999


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCch
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPE  184 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~pe  184 (369)
                      +    +++|++|+||||+.                .|+++|+++||+++...
T Consensus       162 l----g~~p~e~l~VgDs~----------------~di~aA~~aG~~~I~V~  193 (243)
T 4g9b_A          162 L----GVPPQACIGIEDAQ----------------AGIDAINASGMRSVGIG  193 (243)
T ss_dssp             H----TSCGGGEEEEESSH----------------HHHHHHHHHTCEEEEES
T ss_pred             c----CCChHHEEEEcCCH----------------HHHHHHHHcCCEEEEEC
Confidence            6    79999999999998                89999999999997553

>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}

Probab=99.66  E-value=1.8e-16  Score=145.91  Aligned_cols=94  Identities=14%  Similarity=0.172  Sum_probs=82.2

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|++.|+++++.||..              ....+++.+|+  +|+.++++++...+||+|.+|..++++
T Consensus       117 ~~p~~~~ll~~Lk~~g~~i~i~~~~~--------------~~~~~L~~~gl~~~Fd~i~~~~~~~~~KP~p~~~~~a~~~  182 (250)
T 4gib_A          117 ILPGIESLLIDVKSNNIKIGLSSASK--------------NAINVLNHLGISDKFDFIADAGKCKNNKPHPEIFLMSAKG  182 (250)
T ss_dssp             SCTTHHHHHHHHHHTTCEEEECCSCT--------------THHHHHHHHTCGGGCSEECCGGGCCSCTTSSHHHHHHHHH
T ss_pred             cchhHHHHHHHHHhcccccccccccc--------------hhhhHhhhcccccccceeecccccCCCCCcHHHHHHHHHH
Confidence            57999999999999999999988742              12345677888  488899999999999999999999999


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    +++|++|+||||+.                .|+++|+++||+++.
T Consensus       183 l----g~~p~e~l~VGDs~----------------~Di~aA~~aG~~~i~  212 (250)
T 4gib_A          183 L----NVNPQNCIGIEDAS----------------AGIDAINSANMFSVG  212 (250)
T ss_dssp             H----TCCGGGEEEEESSH----------------HHHHHHHHTTCEEEE
T ss_pred             h----CCChHHeEEECCCH----------------HHHHHHHHcCCEEEE
Confidence            6    79999999999998                899999999999863

>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola haloacid dehalogenase-like, PSI; 1.74A {Streptococcus pneumoniae} SCOP: c.108.1.6

Probab=99.63  E-value=1.5e-16  Score=142.22  Aligned_cols=93  Identities=19%  Similarity=0.228  Sum_probs=78.9

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++||+.+.|+.|++ ||+++|+||.+            ...+..+++.+|+.  |+.+++.+  ...||+|.+|..++++
T Consensus        85 ~~~g~~~~l~~L~~-~~~l~i~T~~~------------~~~~~~~l~~~gl~~~f~~i~~~~--~~~Kp~p~~~~~~~~~  149 (210)
T 2ah5_A           85 LFPQIIDLLEELSS-SYPLYITTTKD------------TSTAQDMAKNLEIHHFFDGIYGSS--PEAPHKADVIHQALQT  149 (210)
T ss_dssp             ECTTHHHHHHHHHT-TSCEEEEEEEE------------HHHHHHHHHHTTCGGGCSEEEEEC--SSCCSHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHc-CCeEEEEeCCC------------HHHHHHHHHhcCchhheeeeecCC--CCCCCChHHHHHHHHH
Confidence            57999999999999 99999999942            12345567888884  77777665  6799999999999999


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    +++|++|+||||+.                .|+++|+++|++++.
T Consensus       150 l----g~~p~~~~~vgDs~----------------~Di~~a~~aG~~~i~  179 (210)
T 2ah5_A          150 H----QLAPEQAIIIGDTK----------------FDMLGARETGIQKLA  179 (210)
T ss_dssp             T----TCCGGGEEEEESSH----------------HHHHHHHHHTCEEEE
T ss_pred             c----CCCcccEEEECCCH----------------HHHHHHHHCCCcEEE
Confidence            6    79999999999998                899999999998753

>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}

Probab=99.61  E-value=1.8e-15  Score=136.03  Aligned_cols=96  Identities=17%  Similarity=0.189  Sum_probs=84.5

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|+++|++++|+||..            ...+..+++.+|+.  |+.+++.+....+||+|.+++.++++
T Consensus       104 ~~~~~~~~l~~l~~~g~~~~i~T~~~------------~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~  171 (231)
T 3kzx_A          104 LNDGAIELLDTLKENNITMAIVSNKN------------GERLRSEIHHKNLTHYFDSIIGSGDTGTIKPSPEPVLAALTN  171 (231)
T ss_dssp             ECTTHHHHHHHHHHTTCEEEEEEEEE------------HHHHHHHHHHTTCGGGCSEEEEETSSSCCTTSSHHHHHHHHH
T ss_pred             ECcCHHHHHHHHHHCCCeEEEEECCC------------HHHHHHHHHHCCchhheeeEEcccccCCCCCChHHHHHHHHH
Confidence            68999999999999999999999942            23456677888884  78888888888999999999999999


Q ss_pred             hcCCccccCC-ccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         133 KNGDLAIDIS-QSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       133 ~~~~~~i~~~-~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    +++++ +++||||+.                .|+.+|+++|+.++.
T Consensus       172 l----gi~~~~~~v~vGD~~----------------~Di~~a~~aG~~~v~  202 (231)
T 3kzx_A          172 I----NIEPSKEVFFIGDSI----------------SDIQSAIEAGCLPIK  202 (231)
T ss_dssp             H----TCCCSTTEEEEESSH----------------HHHHHHHHTTCEEEE
T ss_pred             c----CCCcccCEEEEcCCH----------------HHHHHHHHCCCeEEE
Confidence            6    79998 999999999                899999999998864

>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A*

Probab=99.61  E-value=4.1e-16  Score=138.13  Aligned_cols=96  Identities=16%  Similarity=0.157  Sum_probs=81.7

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--e--EEEEecCCCCCCCCchhHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--V--QMFVATQYDRYRKPVPGMWEYLS  130 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~--~~~~~~~~~~~rKP~~gm~~~~~  130 (369)
                      ++|++.+.|+.|++.|++++|+||..            ...+..+++.+|+.  |  +.+++.+. ..+||+|.+++.++
T Consensus        71 ~~~~~~~~l~~l~~~g~~~~i~s~~~------------~~~~~~~l~~~~l~~~f~~~~i~~~~~-~~~kp~~~~~~~~~  137 (205)
T 3m9l_A           71 PAPGAVELVRELAGRGYRLGILTRNA------------RELAHVTLEAIGLADCFAEADVLGRDE-APPKPHPGGLLKLA  137 (205)
T ss_dssp             ECTTHHHHHHHHHHTTCEEEEECSSC------------HHHHHHHHHHTTCGGGSCGGGEECTTT-SCCTTSSHHHHHHH
T ss_pred             CCccHHHHHHHHHhcCCeEEEEeCCc------------hHHHHHHHHHcCchhhcCcceEEeCCC-CCCCCCHHHHHHHH
Confidence            68999999999999999999999953            23456677888873  6  55666655 78999999999999


Q ss_pred             HHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         131 QEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       131 ~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      +++    ++++++++||||+.                .|+.+|+++|++++..
T Consensus       138 ~~~----g~~~~~~i~iGD~~----------------~Di~~a~~aG~~~i~v  170 (205)
T 3m9l_A          138 EAW----DVSPSRMVMVGDYR----------------FDLDCGRAAGTRTVLV  170 (205)
T ss_dssp             HHT----TCCGGGEEEEESSH----------------HHHHHHHHHTCEEEEC
T ss_pred             HHc----CCCHHHEEEECCCH----------------HHHHHHHHcCCEEEEE
Confidence            996    79999999999999                8999999999987644

>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A

Probab=99.61  E-value=2.3e-15  Score=132.56  Aligned_cols=123  Identities=20%  Similarity=0.173  Sum_probs=92.5

Q ss_pred             CceEEEEecCCceeecCC-------------CCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHH
Q psy4598          24 SAKIASFDLDGTLITTKS-------------GKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTR   90 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~s-------------g~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~   90 (369)
                      +.|+++||+||||+....             +..+....... .++|++.+.|++|+++|++++|+||++.         
T Consensus        26 ~~k~vifDlDGTL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~e~L~~L~~~G~~v~ivT~~~~---------   95 (187)
T 2wm8_A           26 LPKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQDV-RLYPEVPEVLKRLQSLGVPGAAASRTSE---------   95 (187)
T ss_dssp             SCSEEEECSBTTTBSSCTTTSSCSCCEECTTSCEECTTCCEE-CCCTTHHHHHHHHHHHTCCEEEEECCSC---------
T ss_pred             ccCEEEEcCCCCcchHHHhhccCcchhhhcccchhhccCccc-CcchhHHHHHHHHHHCCceEEEEeCCCC---------
Confidence            468999999999984321             00011112223 3699999999999999999999999531         


Q ss_pred             HHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcc
Q psy4598          91 DFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACT  168 (369)
Q Consensus        91 ~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~  168 (369)
                        ...+..+++.+|+.  |+.++..     .+|+|.++..+++++    ++++++++||||+.                .
T Consensus        96 --~~~~~~~l~~~gl~~~f~~~~~~-----~~~k~~~~~~~~~~~----~~~~~~~~~igD~~----------------~  148 (187)
T 2wm8_A           96 --IEGANQLLELFDLFRYFVHREIY-----PGSKITHFERLQQKT----GIPFSQMIFFDDER----------------R  148 (187)
T ss_dssp             --HHHHHHHHHHTTCTTTEEEEEES-----SSCHHHHHHHHHHHH----CCCGGGEEEEESCH----------------H
T ss_pred             --hHHHHHHHHHcCcHhhcceeEEE-----eCchHHHHHHHHHHc----CCChHHEEEEeCCc----------------c
Confidence              12355667888884  7754332     267889999999986    78999999999998                8


Q ss_pred             cHHHHHhCCCCccCc
Q psy4598         169 DHLFAFNLNLAFFTP  183 (369)
Q Consensus       169 D~~~A~n~Gi~f~~p  183 (369)
                      |+.+|+++|++++..
T Consensus       149 Di~~a~~aG~~~i~v  163 (187)
T 2wm8_A          149 NIVDVSKLGVTCIHI  163 (187)
T ss_dssp             HHHHHHTTTCEEEEC
T ss_pred             ChHHHHHcCCEEEEE
Confidence            999999999998643

>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A

Probab=99.60  E-value=7.4e-16  Score=138.61  Aligned_cols=96  Identities=18%  Similarity=0.233  Sum_probs=83.4

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|+++|++++|+||.+            ...+..+++.+|+.  |+.+++.+....+||+|.+++.++++
T Consensus        96 ~~~~~~~~l~~l~~~g~~~~i~t~~~------------~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~  163 (232)
T 1zrn_A           96 PFSEVPDSLRELKRRGLKLAILSNGS------------PQSIDAVVSHAGLRDGFDHLLSVDPVQVYKPDNRVYELAEQA  163 (232)
T ss_dssp             ECTTHHHHHHHHHHTTCEEEEEESSC------------HHHHHHHHHHTTCGGGCSEEEESGGGTCCTTSHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHCCCEEEEEeCCC------------HHHHHHHHHhcChHhhhheEEEecccCCCCCCHHHHHHHHHH
Confidence            57999999999999999999999953            12355667888874  77788888788999999999999998


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    ++++++++||||+.                +|+.+|+++|+.++.
T Consensus       164 ~----~~~~~~~~~iGD~~----------------~Di~~a~~aG~~~~~  193 (232)
T 1zrn_A          164 L----GLDRSAILFVASNA----------------WDATGARYFGFPTCW  193 (232)
T ss_dssp             H----TSCGGGEEEEESCH----------------HHHHHHHHHTCCEEE
T ss_pred             c----CCCcccEEEEeCCH----------------HHHHHHHHcCCEEEE
Confidence            6    78999999999998                899999999999864

>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*

Probab=99.60  E-value=2.3e-15  Score=136.41  Aligned_cols=96  Identities=13%  Similarity=0.235  Sum_probs=83.6

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|+++|++++|+||.+            ...+..+++.+|+.  |+.+++.+....+||+|.+++.++++
T Consensus       106 ~~~~~~~~l~~l~~~g~~~~i~s~~~------------~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~  173 (240)
T 2no4_A          106 AYPDAAETLEKLKSAGYIVAILSNGN------------DEMLQAALKASKLDRVLDSCLSADDLKIYKPDPRIYQFACDR  173 (240)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEEESSC------------HHHHHHHHHHTTCGGGCSEEEEGGGTTCCTTSHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHCCCEEEEEcCCC------------HHHHHHHHHhcCcHHHcCEEEEccccCCCCCCHHHHHHHHHH
Confidence            46999999999999999999999953            23456667888874  77788888888999999999999998


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    ++++++++||||+.                .|+.+|+++|+.++.
T Consensus       174 ~----~~~~~~~~~iGD~~----------------~Di~~a~~aG~~~~~  203 (240)
T 2no4_A          174 L----GVNPNEVCFVSSNA----------------WDLGGAGKFGFNTVR  203 (240)
T ss_dssp             H----TCCGGGEEEEESCH----------------HHHHHHHHHTCEEEE
T ss_pred             c----CCCcccEEEEeCCH----------------HHHHHHHHCCCEEEE
Confidence            6    79999999999998                899999999999864

>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A

Probab=99.60  E-value=9.4e-16  Score=138.09  Aligned_cols=97  Identities=18%  Similarity=0.198  Sum_probs=84.3

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|++.|++++|+||.+            ...+..+++.+|+.  |+.+++.++...+||+|.++..++++
T Consensus        84 ~~~~~~~~l~~l~~~g~~~~i~s~~~------------~~~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~  151 (222)
T 2nyv_A           84 PYPEIPYTLEALKSKGFKLAVVSNKL------------EELSKKILDILNLSGYFDLIVGGDTFGEKKPSPTPVLKTLEI  151 (222)
T ss_dssp             ECTTHHHHHHHHHHTTCEEEEECSSC------------HHHHHHHHHHTTCGGGCSEEECTTSSCTTCCTTHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHCCCeEEEEcCCC------------HHHHHHHHHHcCCHHHheEEEecCcCCCCCCChHHHHHHHHH
Confidence            58999999999999999999999943            22455677888874  78888888888899999999999998


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      +    ++++++++||||+.                +|+.+|+++|+.++..
T Consensus       152 ~----~~~~~~~~~vGD~~----------------~Di~~a~~aG~~~i~v  182 (222)
T 2nyv_A          152 L----GEEPEKALIVGDTD----------------ADIEAGKRAGTKTALA  182 (222)
T ss_dssp             H----TCCGGGEEEEESSH----------------HHHHHHHHHTCEEEEE
T ss_pred             h----CCCchhEEEECCCH----------------HHHHHHHHCCCeEEEE
Confidence            6    68999999999998                8999999999997644

>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}

Probab=99.60  E-value=1.1e-15  Score=134.44  Aligned_cols=97  Identities=10%  Similarity=0.196  Sum_probs=85.3

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|++.|++++|+||..            ...+..+++.+|+  .|+.+++.+....+||+|.+++.++++
T Consensus        90 ~~~~~~~~l~~l~~~g~~~~i~s~~~------------~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~  157 (214)
T 3e58_A           90 IFPDVLKVLNEVKSQGLEIGLASSSV------------KADIFRALEENRLQGFFDIVLSGEEFKESKPNPEIYLTALKQ  157 (214)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEEESSC------------HHHHHHHHHHTTCGGGCSEEEEGGGCSSCTTSSHHHHHHHHH
T ss_pred             cCchHHHHHHHHHHCCCCEEEEeCCc------------HHHHHHHHHHcCcHhheeeEeecccccCCCCChHHHHHHHHH
Confidence            68999999999999999999999943            2345667788888  478888888888999999999999999


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      +    ++++++++||||+.                .|+.+|+++|+.++..
T Consensus       158 ~----~~~~~~~~~iGD~~----------------~Di~~a~~aG~~~~~~  188 (214)
T 3e58_A          158 L----NVQASRALIIEDSE----------------KGIAAGVAADVEVWAI  188 (214)
T ss_dssp             H----TCCGGGEEEEECSH----------------HHHHHHHHTTCEEEEE
T ss_pred             c----CCChHHeEEEeccH----------------hhHHHHHHCCCEEEEE
Confidence            6    79999999999998                8999999999998643

>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}

Probab=99.59  E-value=2.4e-15  Score=128.98  Aligned_cols=117  Identities=15%  Similarity=0.152  Sum_probs=90.8

Q ss_pred             CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHc
Q psy4598          24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSL  103 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l  103 (369)
                      +.|+++||+||||+....  .+......+..+.|++.+.|++|+++|++++|+||.+.            ..+..+++.+
T Consensus         8 ~~k~v~~DlDGTL~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~T~~~~------------~~~~~~l~~~   73 (162)
T 2p9j_A            8 KLKLLIMDIDGVLTDGKL--YYTEHGETIKVFNVLDGIGIKLLQKMGITLAVISGRDS------------APLITRLKEL   73 (162)
T ss_dssp             HCCEEEECCTTTTSCSEE--EEETTEEEEEEEEHHHHHHHHHHHTTTCEEEEEESCCC------------HHHHHHHHHT
T ss_pred             ceeEEEEecCcceECCce--eecCCCceeeeecccHHHHHHHHHHCCCEEEEEeCCCc------------HHHHHHHHHc
Confidence            468999999999996431  22333344555688999999999999999999999541            2355667888


Q ss_pred             CCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         104 NVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       104 ~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      |+..  ++.     ..||+|.+++.+++++    ++++++++||||+.                +|+.+|+++|+.++
T Consensus        74 gl~~--~~~-----~~kp~~~~~~~~~~~~----~~~~~~~~~vGD~~----------------~Di~~a~~ag~~~~  124 (162)
T 2p9j_A           74 GVEE--IYT-----GSYKKLEIYEKIKEKY----SLKDEEIGFIGDDV----------------VDIEVMKKVGFPVA  124 (162)
T ss_dssp             TCCE--EEE-----CC--CHHHHHHHHHHT----TCCGGGEEEEECSG----------------GGHHHHHHSSEEEE
T ss_pred             CCHh--hcc-----CCCCCHHHHHHHHHHc----CCCHHHEEEECCCH----------------HHHHHHHHCCCeEE
Confidence            8742  222     2799999999999986    68999999999999                89999999999975

>3um9_A Haloacid dehalogenase, type II; haloacid dehalogenase-like hydrolase protein superfamily, defluorinase, hydrolase; 2.19A {Polaromonas SP}

Probab=99.59  E-value=1.7e-15  Score=135.42  Aligned_cols=96  Identities=15%  Similarity=0.197  Sum_probs=84.1

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|++.|++++|+||.+            ...+..+++.+|+.  |+.+++.+....+||+|.+++.++++
T Consensus        97 ~~~~~~~~l~~l~~~g~~~~i~s~~~------------~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~  164 (230)
T 3um9_A           97 PFADVPQALQQLRAAGLKTAILSNGS------------RHSIRQVVGNSGLTNSFDHLISVDEVRLFKPHQKVYELAMDT  164 (230)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEEESSC------------HHHHHHHHHHHTCGGGCSEEEEGGGTTCCTTCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHhCCCeEEEEeCCC------------HHHHHHHHHHCCChhhcceeEehhhcccCCCChHHHHHHHHH
Confidence            58999999999999999999999953            23455667777874  78888888888999999999999999


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    ++++++++||||+.                +|+.+|+++|+.++.
T Consensus       165 ~----~~~~~~~~~iGD~~----------------~Di~~a~~aG~~~~~  194 (230)
T 3um9_A          165 L----HLGESEILFVSCNS----------------WDATGAKYFGYPVCW  194 (230)
T ss_dssp             H----TCCGGGEEEEESCH----------------HHHHHHHHHTCCEEE
T ss_pred             h----CCCcccEEEEeCCH----------------HHHHHHHHCCCEEEE
Confidence            6    79999999999998                899999999999864

>4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A

Probab=99.58  E-value=9.6e-16  Score=138.12  Aligned_cols=96  Identities=16%  Similarity=0.225  Sum_probs=84.0

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|++.|++++|+||..            ...+..+++.+|+  .|+.+++.+....+||+|.+++.++++
T Consensus       105 ~~~~~~~~l~~l~~~g~~~~i~s~~~------------~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~  172 (237)
T 4ex6_A          105 LYPGVLEGLDRLSAAGFRLAMATSKV------------EKAARAIAELTGLDTRLTVIAGDDSVERGKPHPDMALHVARG  172 (237)
T ss_dssp             BCTTHHHHHHHHHHTTEEEEEECSSC------------HHHHHHHHHHHTGGGTCSEEECTTTSSSCTTSSHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHhCCCcEEEEcCCC------------hHHHHHHHHHcCchhheeeEEeCCCCCCCCCCHHHHHHHHHH
Confidence            68999999999999999999999943            2345566777777  478888888888999999999999999


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    ++++++++||||+.                .|+.+|.++|++++.
T Consensus       173 l----g~~~~~~i~vGD~~----------------~Di~~a~~aG~~~i~  202 (237)
T 4ex6_A          173 L----GIPPERCVVIGDGV----------------PDAEMGRAAGMTVIG  202 (237)
T ss_dssp             H----TCCGGGEEEEESSH----------------HHHHHHHHTTCEEEE
T ss_pred             c----CCCHHHeEEEcCCH----------------HHHHHHHHCCCeEEE
Confidence            6    79999999999999                899999999998754

>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0

Probab=99.58  E-value=1.2e-15  Score=136.25  Aligned_cols=96  Identities=20%  Similarity=0.316  Sum_probs=84.5

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|++.|++++|+||..            ...+..+++.+|+.  |+.+++.+....+||+|.+++.++++
T Consensus        87 ~~~~~~~~l~~l~~~g~~~~i~t~~~------------~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~  154 (226)
T 3mc1_A           87 VYDGIEALLSSLKDYGFHLVVATSKP------------TVFSKQILEHFKLAFYFDAIVGSSLDGKLSTKEDVIRYAMES  154 (226)
T ss_dssp             BCTTHHHHHHHHHHHTCEEEEEEEEE------------HHHHHHHHHHTTCGGGCSEEEEECTTSSSCSHHHHHHHHHHH
T ss_pred             cCcCHHHHHHHHHHCCCeEEEEeCCC------------HHHHHHHHHHhCCHhheeeeeccCCCCCCCCCHHHHHHHHHH
Confidence            68999999999999999999999932            23456678888884  78888888888999999999999999


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    ++++++++||||+.                .|+.+|+++|+.++.
T Consensus       155 l----gi~~~~~i~iGD~~----------------~Di~~a~~aG~~~i~  184 (226)
T 3mc1_A          155 L----NIKSDDAIMIGDRE----------------YDVIGALKNNLPSIG  184 (226)
T ss_dssp             H----TCCGGGEEEEESSH----------------HHHHHHHTTTCCEEE
T ss_pred             h----CcCcccEEEECCCH----------------HHHHHHHHCCCCEEE
Confidence            6    79999999999999                899999999998754

>3umb_A Dehalogenase-like hydrolase; 2.20A {Ralstonia solanacearum}

Probab=99.58  E-value=2e-15  Score=135.48  Aligned_cols=96  Identities=19%  Similarity=0.199  Sum_probs=84.6

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|++.|++++|+||.+            ...+..+++.+|+.  |+.+++.+....+||+|.++..++++
T Consensus       100 ~~~~~~~~l~~l~~~g~~~~i~t~~~------------~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~  167 (233)
T 3umb_A          100 AFPENVPVLRQLREMGLPLGILSNGN------------PQMLEIAVKSAGMSGLFDHVLSVDAVRLYKTAPAAYALAPRA  167 (233)
T ss_dssp             ECTTHHHHHHHHHTTTCCEEEEESSC------------HHHHHHHHHTTTCTTTCSEEEEGGGTTCCTTSHHHHTHHHHH
T ss_pred             CCCCHHHHHHHHHhCCCcEEEEeCCC------------HHHHHHHHHHCCcHhhcCEEEEecccCCCCcCHHHHHHHHHH
Confidence            58999999999999999999999953            23456667888874  88888888888999999999999999


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    ++++++++||||+.                .|+.+|.++|+.++.
T Consensus       168 ~----~~~~~~~~~vGD~~----------------~Di~~a~~~G~~~~~  197 (233)
T 3umb_A          168 F----GVPAAQILFVSSNG----------------WDACGATWHGFTTFW  197 (233)
T ss_dssp             H----TSCGGGEEEEESCH----------------HHHHHHHHHTCEEEE
T ss_pred             h----CCCcccEEEEeCCH----------------HHHHHHHHcCCEEEE
Confidence            6    79999999999998                899999999999864

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=99.58  E-value=9e-15  Score=127.02  Aligned_cols=99  Identities=22%  Similarity=0.361  Sum_probs=84.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhc-cCCcEEEeCCcchh------------H---------HHHHHHHHHHH---hCCCc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLK-PLNYTTVNRDTLGS------------W---------QKCVSVMKAAL---DSGLS  325 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~-~~~~~~i~~D~~~~------------~---------~~~~~~~~~~l---~~g~~  325 (369)
                      ||.+|+|+|+|||||||+++.|++ .+++.+|+.|.++.            |         +.+...+..++   ..|..
T Consensus         1 M~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~   80 (181)
T 1ly1_A            1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKG   80 (181)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSCCE
T ss_pred             CCeEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHHHhhCCCccchhhhchhhhhHHHHHHHHHHHHHHhhccCCCe
Confidence            578999999999999999999999 78999999887631            1         11234566677   78999


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHcC
Q psy4598         326 VVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK  369 (369)
Q Consensus       326 vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn~  369 (369)
                      ||+|+++.+...|..+.++++.+++++.+|++++|.+++.+|+.
T Consensus        81 vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~~~~~~R~~  124 (181)
T 1ly1_A           81 VIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNS  124 (181)
T ss_dssp             EEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHT
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHh
Confidence            99999999999999999999999999999999999999999863

>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A

Probab=99.58  E-value=2.9e-15  Score=138.80  Aligned_cols=95  Identities=18%  Similarity=0.255  Sum_probs=80.3

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++||+.+.|+.|++ |++++|+||++            ...+..+++.+|+.  |+.++++++...+||+|.+|+.++++
T Consensus       122 ~~~g~~~~L~~L~~-~~~l~i~Tn~~------------~~~~~~~l~~~gl~~~f~~i~~~~~~~~~KP~p~~~~~~~~~  188 (260)
T 2gfh_A          122 LADDVKAMLTELRK-EVRLLLLTNGD------------RQTQREKIEACACQSYFDAIVIGGEQKEEKPAPSIFYHCCDL  188 (260)
T ss_dssp             CCHHHHHHHHHHHT-TSEEEEEECSC------------HHHHHHHHHHHTCGGGCSEEEEGGGSSSCTTCHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHc-CCcEEEEECcC------------hHHHHHHHHhcCHHhhhheEEecCCCCCCCCCHHHHHHHHHH
Confidence            57999999999987 69999999954            12345567777874  88878888888999999999999998


Q ss_pred             hcCCccccCCccEEeeCc-cccccccCCCCCCCCCcccHHHHHhCCC-CccC
Q psy4598         133 KNGDLAIDISQSFYAGDA-AGRAANWAPKKKKDFACTDHLFAFNLNL-AFFT  182 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~-~gr~~~~~~~~~~d~s~~D~~~A~n~Gi-~f~~  182 (369)
                      +    ++++++|+||||+ .                .|+++|+++|+ .++.
T Consensus       189 ~----~~~~~~~~~vGDs~~----------------~Di~~A~~aG~~~~i~  220 (260)
T 2gfh_A          189 L----GVQPGDCVMVGDTLE----------------TDIQGGLNAGLKATVW  220 (260)
T ss_dssp             H----TCCGGGEEEEESCTT----------------THHHHHHHTTCSEEEE
T ss_pred             c----CCChhhEEEECCCch----------------hhHHHHHHCCCceEEE
Confidence            6    7899999999995 6                89999999999 6653

>2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB: 2w11_A

Probab=99.56  E-value=5.1e-15  Score=130.61  Aligned_cols=92  Identities=13%  Similarity=0.194  Sum_probs=79.7

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+ |+.|+++ ++++|+||.+            ...+..+++.+|+.  |+.+++.+....+||+|.++..++++
T Consensus        75 ~~~~~~~-l~~l~~~-~~~~i~t~~~------------~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~  140 (201)
T 2w43_A           75 AYEDTKY-LKEISEI-AEVYALSNGS------------INEVKQHLERNGLLRYFKGIFSAESVKEYKPSPKVYKYFLDS  140 (201)
T ss_dssp             ECGGGGG-HHHHHHH-SEEEEEESSC------------HHHHHHHHHHTTCGGGCSEEEEGGGGTCCTTCHHHHHHHHHH
T ss_pred             cCCChHH-HHHHHhC-CeEEEEeCcC------------HHHHHHHHHHCCcHHhCcEEEehhhcCCCCCCHHHHHHHHHh
Confidence            5899999 9999999 9999999953            23456677888884  78788888888999999999999998


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    +  +++++||||+.                .|+.+|+++|+.++.
T Consensus       141 ~----~--~~~~~~vGD~~----------------~Di~~a~~aG~~~~~  168 (201)
T 2w43_A          141 I----G--AKEAFLVSSNA----------------FDVIGAKNAGMRSIF  168 (201)
T ss_dssp             H----T--CSCCEEEESCH----------------HHHHHHHHTTCEEEE
T ss_pred             c----C--CCcEEEEeCCH----------------HHhHHHHHCCCEEEE
Confidence            6    5  89999999999                899999999999864

>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV}

Probab=99.56  E-value=2.5e-15  Score=134.45  Aligned_cols=97  Identities=21%  Similarity=0.191  Sum_probs=84.4

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|++.|++++|+||..            ...+..+++.+|+.  |+.+++.+....+||++.+++.++++
T Consensus        92 ~~~~~~~~l~~l~~~g~~~~i~s~~~------------~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~  159 (233)
T 3s6j_A           92 ALPGAVELLETLDKENLKWCIATSGG------------IDTATINLKALKLDINKINIVTRDDVSYGKPDPDLFLAAAKK  159 (233)
T ss_dssp             ECTTHHHHHHHHHHTTCCEEEECSSC------------HHHHHHHHHTTTCCTTSSCEECGGGSSCCTTSTHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHCCCeEEEEeCCc------------hhhHHHHHHhcchhhhhheeeccccCCCCCCChHHHHHHHHH
Confidence            58999999999999999999999943            23456667888874  78888888888999999999999999


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      +    ++++++++||||+.                .|+.+|+++|++++..
T Consensus       160 l----~~~~~~~i~iGD~~----------------~Di~~a~~aG~~~i~v  190 (233)
T 3s6j_A          160 I----GAPIDECLVIGDAI----------------WDMLAARRCKATGVGL  190 (233)
T ss_dssp             T----TCCGGGEEEEESSH----------------HHHHHHHHTTCEEEEE
T ss_pred             h----CCCHHHEEEEeCCH----------------HhHHHHHHCCCEEEEE
Confidence            6    79999999999999                8999999999987543

>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics, protein structure initiative, NEW research center for structural genomics; 3.00A {Bacillus subtilis}

Probab=99.55  E-value=2.4e-15  Score=135.16  Aligned_cols=94  Identities=16%  Similarity=0.154  Sum_probs=74.5

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|++.|++++|+||.+              .+..+++.+|+  .|+.+++.+....+||+|.+++.++++
T Consensus        93 ~~~~~~~~l~~l~~~g~~~~i~t~~~--------------~~~~~l~~~gl~~~f~~i~~~~~~~~~Kp~~~~~~~~~~~  158 (233)
T 3nas_A           93 LLPGIGRLLCQLKNENIKIGLASSSR--------------NAPKILRRLAIIDDFHAIVDPTTLAKGKPDPDIFLTAAAM  158 (233)
T ss_dssp             SCTTHHHHHHHHHHTTCEEEECCSCT--------------THHHHHHHTTCTTTCSEECCC---------CCHHHHHHHH
T ss_pred             cCcCHHHHHHHHHHCCCcEEEEcCch--------------hHHHHHHHcCcHhhcCEEeeHhhCCCCCCChHHHHHHHHH
Confidence            58999999999999999999999942              13456778887  478888888888999999999999999


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    ++++++++||||+.                .|+.+|+++|+.++.
T Consensus       159 l----gi~~~~~i~vGDs~----------------~Di~~a~~aG~~~~~  188 (233)
T 3nas_A          159 L----DVSPADCAAIEDAE----------------AGISAIKSAGMFAVG  188 (233)
T ss_dssp             H----TSCGGGEEEEECSH----------------HHHHHHHHTTCEEEE
T ss_pred             c----CCCHHHEEEEeCCH----------------HHHHHHHHcCCEEEE
Confidence            6    79999999999998                899999999999853

>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase-LI superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1}

Probab=99.55  E-value=1.7e-15  Score=133.27  Aligned_cols=95  Identities=12%  Similarity=0.133  Sum_probs=80.4

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|+++| +++|+||.+            ...+..+++.+|+.  |+.+++.+....+||+|.+++.++++
T Consensus        87 ~~~~~~~~l~~l~~~g-~~~i~s~~~------------~~~~~~~l~~~~~~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~  153 (200)
T 3cnh_A           87 PRPEVLALARDLGQRY-RMYSLNNEG------------RDLNEYRIRTFGLGEFLLAFFTSSALGVMKPNPAMYRLGLTL  153 (200)
T ss_dssp             BCHHHHHHHHHHTTTS-EEEEEECCC------------HHHHHHHHHHHTGGGTCSCEEEHHHHSCCTTCHHHHHHHHHH
T ss_pred             cCccHHHHHHHHHHcC-CEEEEeCCc------------HHHHHHHHHhCCHHHhcceEEeecccCCCCCCHHHHHHHHHH
Confidence            5799999999999999 999999953            22345556677763  77777777777899999999999998


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    ++++++++||||+.                .|+.+|+++|+.++.
T Consensus       154 ~----~~~~~~~~~vgD~~----------------~Di~~a~~aG~~~~~  183 (200)
T 3cnh_A          154 A----QVRPEEAVMVDDRL----------------QNVQAARAVGMHAVQ  183 (200)
T ss_dssp             H----TCCGGGEEEEESCH----------------HHHHHHHHTTCEEEE
T ss_pred             c----CCCHHHeEEeCCCH----------------HHHHHHHHCCCEEEE
Confidence            6    78999999999999                899999999999853

>2hsz_A Novel predicted phosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP: c.108.1.6

Probab=99.55  E-value=4.3e-15  Score=135.74  Aligned_cols=97  Identities=22%  Similarity=0.340  Sum_probs=84.2

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|+++|++++|+||..            ...+..+++.+|+.  |+.+++.+....+||+|.++..++++
T Consensus       115 ~~~~~~~~l~~l~~~g~~~~i~t~~~------------~~~~~~~l~~~gl~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~  182 (243)
T 2hsz_A          115 LYPNVKETLEALKAQGYILAVVTNKP------------TKHVQPILTAFGIDHLFSEMLGGQSLPEIKPHPAPFYYLCGK  182 (243)
T ss_dssp             ECTTHHHHHHHHHHTTCEEEEECSSC------------HHHHHHHHHHTTCGGGCSEEECTTTSSSCTTSSHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHCCCEEEEEECCc------------HHHHHHHHHHcCchheEEEEEecccCCCCCcCHHHHHHHHHH
Confidence            46999999999999999999999953            22456677888874  78888888888899999999999998


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      +    ++++++++||||+.                .|+.+|+++|+.++..
T Consensus       183 ~----~~~~~~~~~vGD~~----------------~Di~~a~~aG~~~i~v  213 (243)
T 2hsz_A          183 F----GLYPKQILFVGDSQ----------------NDIFAAHSAGCAVVGL  213 (243)
T ss_dssp             H----TCCGGGEEEEESSH----------------HHHHHHHHHTCEEEEE
T ss_pred             h----CcChhhEEEEcCCH----------------HHHHHHHHCCCeEEEE
Confidence            6    78999999999998                8999999999998643

>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile}

Probab=99.55  E-value=3.1e-15  Score=135.36  Aligned_cols=96  Identities=16%  Similarity=0.278  Sum_probs=84.5

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|++.|++++|+||..            ...+..+++.+|+.  |+.+++.+....+||+|.+++.++++
T Consensus       111 ~~~~~~~~l~~l~~~g~~~~i~s~~~------------~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~  178 (240)
T 3sd7_A          111 IYENMKEILEMLYKNGKILLVATSKP------------TVFAETILRYFDIDRYFKYIAGSNLDGTRVNKNEVIQYVLDL  178 (240)
T ss_dssp             ECTTHHHHHHHHHHTTCEEEEEEEEE------------HHHHHHHHHHTTCGGGCSEEEEECTTSCCCCHHHHHHHHHHH
T ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCc------------HHHHHHHHHHcCcHhhEEEEEeccccCCCCCCHHHHHHHHHH
Confidence            68999999999999999999999932            23456677888884  78888888888999999999999999


Q ss_pred             hcCCcccc-CCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         133 KNGDLAID-ISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       133 ~~~~~~i~-~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    +++ +++++||||+.                .|+.+|.++|++++.
T Consensus       179 ~----g~~~~~~~i~vGD~~----------------~Di~~a~~aG~~~i~  209 (240)
T 3sd7_A          179 C----NVKDKDKVIMVGDRK----------------YDIIGAKKIGIDSIG  209 (240)
T ss_dssp             H----TCCCGGGEEEEESSH----------------HHHHHHHHHTCEEEE
T ss_pred             c----CCCCCCcEEEECCCH----------------HHHHHHHHCCCCEEE
Confidence            6    788 99999999999                899999999998754

>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A* 1aq6_A

Probab=99.55  E-value=7.5e-15  Score=134.52  Aligned_cols=94  Identities=12%  Similarity=0.200  Sum_probs=81.3

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|+  |++++|+||.+            ...+..+++.+|+.  |+.+++.+....+||+|.++..++++
T Consensus        94 ~~~~~~~~l~~l~--g~~~~i~t~~~------------~~~~~~~l~~~gl~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~  159 (253)
T 1qq5_A           94 PYPDAAQCLAELA--PLKRAILSNGA------------PDMLQALVANAGLTDSFDAVISVDAKRVFKPHPDSYALVEEV  159 (253)
T ss_dssp             BCTTHHHHHHHHT--TSEEEEEESSC------------HHHHHHHHHHTTCGGGCSEEEEGGGGTCCTTSHHHHHHHHHH
T ss_pred             CCccHHHHHHHHc--CCCEEEEeCcC------------HHHHHHHHHHCCchhhccEEEEccccCCCCCCHHHHHHHHHH
Confidence            5799999999998  99999999953            22345667788874  78888888888999999999999998


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    ++++++++||||+.                .|+.+|+++|+.++.
T Consensus       160 ~----~~~~~~~~~vGD~~----------------~Di~~a~~aG~~~~~  189 (253)
T 1qq5_A          160 L----GVTPAEVLFVSSNG----------------FDVGGAKNFGFSVAR  189 (253)
T ss_dssp             H----CCCGGGEEEEESCH----------------HHHHHHHHHTCEEEE
T ss_pred             c----CCCHHHEEEEeCCh----------------hhHHHHHHCCCEEEE
Confidence            6    79999999999998                899999999999853

>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde hydrolase like P structural genomics, PSI-2, protein structure initiative; 2.30A {Oleispira antarctica} SCOP: c.108.1.0

Probab=99.54  E-value=2.3e-14  Score=131.76  Aligned_cols=98  Identities=12%  Similarity=0.048  Sum_probs=80.9

Q ss_pred             cccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHc---CCCeEEEEecCCCCCCCCchhHHHHHH
Q psy4598          54 LLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSL---NVPVQMFVATQYDRYRKPVPGMWEYLS  130 (369)
Q Consensus        54 ~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l---~i~~~~~~~~~~~~~rKP~~gm~~~~~  130 (369)
                      .++|++.+.|+.|++.|++++|+||.+        .    ..+..+++.+   +..|+.+++.+....+||+|.+++.++
T Consensus       111 ~~~~~~~~~l~~l~~~g~~~~i~tn~~--------~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~~  178 (277)
T 3iru_A          111 QLIPGWKEVFDKLIAQGIKVGGNTGYG--------P----GMMAPALIAAKEQGYTPASTVFATDVVRGRPFPDMALKVA  178 (277)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEECSSC--------H----HHHHHHHHHHHHTTCCCSEEECGGGSSSCTTSSHHHHHHH
T ss_pred             ccCcCHHHHHHHHHHcCCeEEEEeCCc--------h----HHHHHHHHhcCcccCCCceEecHHhcCCCCCCHHHHHHHH
Confidence            368999999999999999999999953        1    2223334433   333788888888889999999999999


Q ss_pred             HHhcCCccccC-CccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         131 QEKNGDLAIDI-SQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       131 ~~~~~~~~i~~-~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      +++    ++++ ++++||||+.                .|+.+|+++|+.++..
T Consensus       179 ~~l----gi~~~~~~i~vGD~~----------------~Di~~a~~aG~~~v~v  212 (277)
T 3iru_A          179 LEL----EVGHVNGCIKVDDTL----------------PGIEEGLRAGMWTVGV  212 (277)
T ss_dssp             HHH----TCSCGGGEEEEESSH----------------HHHHHHHHTTCEEEEE
T ss_pred             HHc----CCCCCccEEEEcCCH----------------HHHHHHHHCCCeEEEE
Confidence            996    7999 9999999998                8999999999987543

>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3, haloacid dehalogenase-like hydrolase domain containin structural genomics; 1.55A {Homo sapiens}

Probab=99.54  E-value=7.2e-15  Score=135.82  Aligned_cols=96  Identities=16%  Similarity=0.246  Sum_probs=82.9

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|++.|++++|+||...             .+..+++.+|+  .|+.+++......+||+|.+|..++++
T Consensus       107 ~~~~~~~~l~~l~~~g~~~~i~tn~~~-------------~~~~~l~~~gl~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~  173 (263)
T 3k1z_A          107 VLDGAEDTLRECRTRGLRLAVISNFDR-------------RLEGILGGLGLREHFDFVLTSEAAGWPKPDPRIFQEALRL  173 (263)
T ss_dssp             ECTTHHHHHHHHHHTTCEEEEEESCCT-------------THHHHHHHTTCGGGCSCEEEHHHHSSCTTSHHHHHHHHHH
T ss_pred             ECcCHHHHHHHHHhCCCcEEEEeCCcH-------------HHHHHHHhCCcHHhhhEEEeecccCCCCCCHHHHHHHHHH
Confidence            689999999999999999999999431             13566788888  478778887788999999999999999


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    ++++++++||||+..               .|+.+|+++|+.++.
T Consensus       174 ~----g~~~~~~~~vGD~~~---------------~Di~~a~~aG~~~i~  204 (263)
T 3k1z_A          174 A----HMEPVVAAHVGDNYL---------------CDYQGPRAVGMHSFL  204 (263)
T ss_dssp             H----TCCGGGEEEEESCHH---------------HHTHHHHTTTCEEEE
T ss_pred             c----CCCHHHEEEECCCcH---------------HHHHHHHHCCCEEEE
Confidence            6    799999999999952               799999999999864

>3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A {Pseudomonas}

Probab=99.53  E-value=3.3e-15  Score=133.88  Aligned_cols=96  Identities=21%  Similarity=0.245  Sum_probs=80.4

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCchhHHHHH---HH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYL---SQ  131 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~~~~~~~~~~~~rKP~~gm~~~~---~~  131 (369)
                      ++|++.+.|+.|++ |++++|+||.+            ...+...++.++-.|+.++++.+...+||+|.+|..+   ++
T Consensus       100 ~~~~~~~~l~~l~~-~~~~~i~tn~~------------~~~~~~~l~~l~~~fd~i~~~~~~~~~KP~~~~~~~~l~~~~  166 (240)
T 3smv_A          100 AFPDTVEALQYLKK-HYKLVILSNID------------RNEFKLSNAKLGVEFDHIITAQDVGSYKPNPNNFTYMIDALA  166 (240)
T ss_dssp             BCTTHHHHHHHHHH-HSEEEEEESSC------------HHHHHHHHTTTCSCCSEEEEHHHHTSCTTSHHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHh-CCeEEEEeCCC------------hhHHHHHHHhcCCccCEEEEccccCCCCCCHHHHHHHHHHHH
Confidence            68999999999999 89999999953            1233444556777788888888888999999999999   66


Q ss_pred             HhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         132 EKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       132 ~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      ++    ++++++++||||+..               .|+.+|+++|+.++.
T Consensus       167 ~l----gi~~~~~~~vGD~~~---------------~Di~~a~~aG~~~~~  198 (240)
T 3smv_A          167 KA----GIEKKDILHTAESLY---------------HDHIPANDAGLVSAW  198 (240)
T ss_dssp             HT----TCCGGGEEEEESCTT---------------TTHHHHHHHTCEEEE
T ss_pred             hc----CCCchhEEEECCCch---------------hhhHHHHHcCCeEEE
Confidence            64    799999999999942               799999999999864

>2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics, PSI-2, protein structure initiative, joint center structural genomics; HET: MSE; 1.50A {Lactobacillus plantarum} SCOP: c.108.1.6

Probab=99.53  E-value=4.9e-15  Score=131.22  Aligned_cols=95  Identities=21%  Similarity=0.274  Sum_probs=82.8

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|+++ ++++|+||.+            ...+..+++.+|+  .|+.+++.+....+||+|.+++.++++
T Consensus        84 ~~~~~~~~l~~l~~~-~~~~i~s~~~------------~~~~~~~l~~~~l~~~f~~~~~~~~~~~~KP~~~~~~~~~~~  150 (209)
T 2hdo_A           84 LYPGITSLFEQLPSE-LRLGIVTSQR------------RNELESGMRSYPFMMRMAVTISADDTPKRKPDPLPLLTALEK  150 (209)
T ss_dssp             ECTTHHHHHHHSCTT-SEEEEECSSC------------HHHHHHHHTTSGGGGGEEEEECGGGSSCCTTSSHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHhc-CcEEEEeCCC------------HHHHHHHHHHcChHhhccEEEecCcCCCCCCCcHHHHHHHHH
Confidence            689999999999999 9999999953            2345566777777  488888888888999999999999998


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    ++++++++||||+.                +|+.+|+++|+.++.
T Consensus       151 ~----~~~~~~~i~vGD~~----------------~Di~~a~~aG~~~~~  180 (209)
T 2hdo_A          151 V----NVAPQNALFIGDSV----------------SDEQTAQAANVDFGL  180 (209)
T ss_dssp             T----TCCGGGEEEEESSH----------------HHHHHHHHHTCEEEE
T ss_pred             c----CCCcccEEEECCCh----------------hhHHHHHHcCCeEEE
Confidence            6    78999999999998                899999999999864

>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus}

Probab=99.53  E-value=4.1e-15  Score=134.46  Aligned_cols=95  Identities=13%  Similarity=0.165  Sum_probs=78.9

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--Ce--EEEEecCCCCCCCCchhHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PV--QMFVATQYDRYRKPVPGMWEYLS  130 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~--~~~~~~~~~~~rKP~~gm~~~~~  130 (369)
                      ++|++.+.|+.|++.|++++|+||...        .    .+...++. ++  .|  +.+++.+....+||+|.+++.++
T Consensus       109 ~~~~~~~~l~~l~~~g~~~~i~t~~~~--------~----~~~~~l~~-~l~~~f~~~~~~~~~~~~~~kp~~~~~~~~~  175 (247)
T 3dv9_A          109 RMPGALEVLTKIKSEGLTPMVVTGSGQ--------T----SLLDRLNH-NFPGIFQANLMVTAFDVKYGKPNPEPYLMAL  175 (247)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEECSCC---------------CHHHHHH-HSTTTCCGGGEECGGGCSSCTTSSHHHHHHH
T ss_pred             CCCCHHHHHHHHHHcCCcEEEEcCCch--------H----HHHHHHHh-hHHHhcCCCeEEecccCCCCCCCCHHHHHHH
Confidence            579999999999999999999999531        1    12233444 44  47  77888888889999999999999


Q ss_pred             HHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         131 QEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       131 ~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +++    ++++++++||||+.                .|+.+|+++|+.++.
T Consensus       176 ~~l----g~~~~~~i~vGD~~----------------~Di~~a~~aG~~~i~  207 (247)
T 3dv9_A          176 KKG----GFKPNEALVIENAP----------------LGVQAGVAAGIFTIA  207 (247)
T ss_dssp             HHH----TCCGGGEEEEECSH----------------HHHHHHHHTTSEEEE
T ss_pred             HHc----CCChhheEEEeCCH----------------HHHHHHHHCCCeEEE
Confidence            996    79999999999999                899999999998753

>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*

Probab=99.52  E-value=2.1e-15  Score=151.17  Aligned_cols=101  Identities=13%  Similarity=0.201  Sum_probs=81.1

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCchhHHHHHHHHhc
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKN  134 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~  134 (369)
                      ++|++.+.|+.|+++||+++|+||...  .....    ...+...+..+.-+|+.++++++...+||+|.+|+.+++++ 
T Consensus       101 ~~~~~~~~L~~L~~~g~~~~i~Tn~~~--~~~~~----~~~~~~~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~l-  173 (555)
T 3i28_A          101 INRPMLQAALMLRKKGFTTAILTNTWL--DDRAE----RDGLAQLMCELKMHFDFLIESCQVGMVKPEPQIYKFLLDTL-  173 (555)
T ss_dssp             ECHHHHHHHHHHHHTTCEEEEEECCCC--CCSTT----HHHHHHHHHHHHTTSSEEEEHHHHTCCTTCHHHHHHHHHHH-
T ss_pred             cChhHHHHHHHHHHCCCEEEEEeCCCc--cccch----hhHHHHHhhhhhhheeEEEeccccCCCCCCHHHHHHHHHHc-
Confidence            679999999999999999999999410  01111    22233333344446888888888889999999999999996 


Q ss_pred             CCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         135 GDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       135 ~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                         ++++++|+||||+.                .|+++|+++|++++
T Consensus       174 ---g~~p~~~~~v~D~~----------------~di~~a~~aG~~~~  201 (555)
T 3i28_A          174 ---KASPSEVVFLDDIG----------------ANLKPARDLGMVTI  201 (555)
T ss_dssp             ---TCCGGGEEEEESCH----------------HHHHHHHHHTCEEE
T ss_pred             ---CCChhHEEEECCcH----------------HHHHHHHHcCCEEE
Confidence               79999999999998                89999999999983

>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis}

Probab=99.52  E-value=5.6e-15  Score=130.88  Aligned_cols=95  Identities=9%  Similarity=0.147  Sum_probs=80.2

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHH------cCCC--eEEEEecCCCCCCCCchhHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKS------LNVP--VQMFVATQYDRYRKPVPGMW  126 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~------l~i~--~~~~~~~~~~~~rKP~~gm~  126 (369)
                      ++|++.+.|+.|++ |++++|+||.+            ...+..+++.      +|+.  |+.+++.+....+||+|.++
T Consensus        90 ~~~~~~~~l~~l~~-g~~~~i~t~~~------------~~~~~~~~~~l~~~~~~~l~~~f~~~~~~~~~~~~Kp~~~~~  156 (211)
T 2i6x_A           90 ISAEKFDYIDSLRP-DYRLFLLSNTN------------PYVLDLAMSPRFLPSGRTLDSFFDKVYASCQMGKYKPNEDIF  156 (211)
T ss_dssp             ECHHHHHHHHHHTT-TSEEEEEECCC------------HHHHHHHTSTTSSTTCCCGGGGSSEEEEHHHHTCCTTSHHHH
T ss_pred             cChHHHHHHHHHHc-CCeEEEEeCCC------------HHHHHHHHhhhccccccCHHHHcCeEEeecccCCCCCCHHHH
Confidence            57999999999998 99999999953            1234455555      5663  77777777778899999999


Q ss_pred             HHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         127 EYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       127 ~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      ..+++++    ++++++++||||+.                .|+.+|.++|+.++.
T Consensus       157 ~~~~~~~----~~~~~~~~~igD~~----------------~Di~~a~~aG~~~~~  192 (211)
T 2i6x_A          157 LEMIADS----GMKPEETLFIDDGP----------------ANVATAERLGFHTYC  192 (211)
T ss_dssp             HHHHHHH----CCCGGGEEEECSCH----------------HHHHHHHHTTCEEEC
T ss_pred             HHHHHHh----CCChHHeEEeCCCH----------------HHHHHHHHcCCEEEE
Confidence            9999986    79999999999999                899999999999864

>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*

Probab=99.51  E-value=1.9e-14  Score=123.62  Aligned_cols=118  Identities=18%  Similarity=0.189  Sum_probs=88.6

Q ss_pred             CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHc
Q psy4598          24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSL  103 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l  103 (369)
                      +.|.++||+||||+...  ..+......+..+...-...|+.|+++|++++|+||.+            ...+..+++.+
T Consensus         3 ~ik~vifD~DGTL~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~~g~~~~i~T~~~------------~~~~~~~~~~~   68 (164)
T 3e8m_A            3 EIKLILTDIDGVWTDGG--MFYDQTGNEWKKFNTSDSAGIFWAHNKGIPVGILTGEK------------TEIVRRRAEKL   68 (164)
T ss_dssp             CCCEEEECSTTTTSSSE--EEECSSSCEEEEEEGGGHHHHHHHHHTTCCEEEECSSC------------CHHHHHHHHHT
T ss_pred             cceEEEEcCCCceEcCc--EEEcCCCcEEEEecCChHHHHHHHHHCCCEEEEEeCCC------------hHHHHHHHHHc
Confidence            46899999999999743  12222333333333334458999999999999999954            13456677888


Q ss_pred             CCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         104 NVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       104 ~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      |+.-  ++.     ..||+|.++..+++++    ++++++++||||+.                +|+.+|+++|+.+.-
T Consensus        69 gl~~--~~~-----~~kpk~~~~~~~~~~~----~~~~~~~~~vGD~~----------------~Di~~~~~ag~~~~~  120 (164)
T 3e8m_A           69 KVDY--LFQ-----GVVDKLSAAEELCNEL----GINLEQVAYIGDDL----------------NDAKLLKRVGIAGVP  120 (164)
T ss_dssp             TCSE--EEC-----SCSCHHHHHHHHHHHH----TCCGGGEEEECCSG----------------GGHHHHTTSSEEECC
T ss_pred             CCCE--eec-----ccCChHHHHHHHHHHc----CCCHHHEEEECCCH----------------HHHHHHHHCCCeEEc
Confidence            8742  111     2599999999999996    78999999999999                899999999998753

>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0

Probab=99.51  E-value=4.9e-14  Score=125.11  Aligned_cols=95  Identities=16%  Similarity=0.171  Sum_probs=78.5

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEe----------cCCCCCCCCc
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVA----------TQYDRYRKPV  122 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~----------~~~~~~rKP~  122 (369)
                      ++|++.+.|+.|+++|++++|+||..            ...+..+++.+|+.  |+.+++          +.....+||+
T Consensus        76 ~~~~~~~~l~~l~~~g~~~~i~S~~~------------~~~~~~~l~~~gl~~~f~~~~~~~~~~~~~~~~~~~~~~k~k  143 (217)
T 3m1y_A           76 LFEGALELVSALKEKNYKVVCFSGGF------------DLATNHYRDLLHLDAAFSNTLIVENDALNGLVTGHMMFSHSK  143 (217)
T ss_dssp             BCBTHHHHHHHHHTTTEEEEEEEEEE------------HHHHHHHHHHHTCSEEEEEEEEEETTEEEEEEEESCCSTTHH
T ss_pred             CCCCHHHHHHHHHHCCCEEEEEcCCc------------hhHHHHHHHHcCcchhccceeEEeCCEEEeeeccCCCCCCCh
Confidence            68999999999999999999999932            23455667788885  554442          2234578999


Q ss_pred             hhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         123 PGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       123 ~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      |.+++.+++++    ++++++++||||+.                .|+.+|.++|+.+.
T Consensus       144 ~~~~~~~~~~~----g~~~~~~i~vGDs~----------------~Di~~a~~aG~~~~  182 (217)
T 3m1y_A          144 GEMLLVLQRLL----NISKTNTLVVGDGA----------------NDLSMFKHAHIKIA  182 (217)
T ss_dssp             HHHHHHHHHHH----TCCSTTEEEEECSG----------------GGHHHHTTCSEEEE
T ss_pred             HHHHHHHHHHc----CCCHhHEEEEeCCH----------------HHHHHHHHCCCeEE
Confidence            99999999986    79999999999998                89999999999973

>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0

Probab=99.51  E-value=1.2e-14  Score=130.36  Aligned_cols=96  Identities=18%  Similarity=0.235  Sum_probs=81.7

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|+ +|++++|+||.+            ...+...++.+|+  .|+.+++.+....+||+|.+++.++++
T Consensus       108 ~~~~~~~~l~~l~-~g~~~~i~sn~~------------~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~  174 (240)
T 3qnm_A          108 LMPHAKEVLEYLA-PQYNLYILSNGF------------RELQSRKMRSAGVDRYFKKIILSEDLGVLKPRPEIFHFALSA  174 (240)
T ss_dssp             BSTTHHHHHHHHT-TTSEEEEEECSC------------HHHHHHHHHHHTCGGGCSEEEEGGGTTCCTTSHHHHHHHHHH
T ss_pred             cCccHHHHHHHHH-cCCeEEEEeCCc------------hHHHHHHHHHcChHhhceeEEEeccCCCCCCCHHHHHHHHHH
Confidence            5899999999999 999999999942            2234556677777  378888888888999999999999999


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    ++++++++||||+..               .|+.+|+++|+.++.
T Consensus       175 l----gi~~~~~~~iGD~~~---------------~Di~~a~~aG~~~~~  205 (240)
T 3qnm_A          175 T----QSELRESLMIGDSWE---------------ADITGAHGVGMHQAF  205 (240)
T ss_dssp             T----TCCGGGEEEEESCTT---------------TTHHHHHHTTCEEEE
T ss_pred             c----CCCcccEEEECCCch---------------HhHHHHHHcCCeEEE
Confidence            6    799999999999941               799999999999854

>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB: 3i76_A

Probab=99.51  E-value=1.3e-14  Score=130.22  Aligned_cols=96  Identities=14%  Similarity=0.179  Sum_probs=82.5

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|++. ++++|+||..            ...+...++.+|+.  |+.+++.+....+||+|.+++.++++
T Consensus       104 ~~~~~~~~l~~l~~~-~~~~i~t~~~------------~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~  170 (238)
T 3ed5_A          104 LIDGAFDLISNLQQQ-FDLYIVTNGV------------SHTQYKRLRDSGLFPFFKDIFVSEDTGFQKPMKEYFNYVFER  170 (238)
T ss_dssp             BCTTHHHHHHHHHTT-SEEEEEECSC------------HHHHHHHHHHTTCGGGCSEEEEGGGTTSCTTCHHHHHHHHHT
T ss_pred             CCccHHHHHHHHHhc-CeEEEEeCCC------------HHHHHHHHHHcChHhhhheEEEecccCCCCCChHHHHHHHHH
Confidence            689999999999999 9999999953            23445667788874  78888888888999999999999998


Q ss_pred             hcCCcc-ccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         133 KNGDLA-IDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       133 ~~~~~~-i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    + +++++++||||+..               .|+.+|+++|+.++.
T Consensus       171 ~----g~~~~~~~i~vGD~~~---------------~Di~~a~~aG~~~i~  202 (238)
T 3ed5_A          171 I----PQFSAEHTLIIGDSLT---------------ADIKGGQLAGLDTCW  202 (238)
T ss_dssp             S----TTCCGGGEEEEESCTT---------------TTHHHHHHTTCEEEE
T ss_pred             c----CCCChhHeEEECCCcH---------------HHHHHHHHCCCEEEE
Confidence            5    7 99999999999962               699999999998753

>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} SCOP: c.108.1.1 PDB: 1x42_A

Probab=99.51  E-value=1.9e-14  Score=128.95  Aligned_cols=96  Identities=19%  Similarity=0.333  Sum_probs=82.4

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|++. ++++|+||.+            ...+...++.+|+.  |+.+++.+....+||+|.+++.++++
T Consensus       101 ~~~~~~~~l~~l~~~-~~~~i~t~~~------------~~~~~~~l~~~~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~  167 (234)
T 3u26_A          101 LYPEVVEVLKSLKGK-YHVGMITDSD------------TEQAMAFLDALGIKDLFDSITTSEEAGFFKPHPRIFELALKK  167 (234)
T ss_dssp             BCTTHHHHHHHHTTT-SEEEEEESSC------------HHHHHHHHHHTTCGGGCSEEEEHHHHTBCTTSHHHHHHHHHH
T ss_pred             cCcCHHHHHHHHHhC-CcEEEEECCC------------HHHHHHHHHHcCcHHHcceeEeccccCCCCcCHHHHHHHHHH
Confidence            689999999999999 9999999953            23455667888884  78888887778899999999999999


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    ++++++++||||+..               +|+.+|+++|+.++.
T Consensus       168 ~----~~~~~~~~~vGD~~~---------------~Di~~a~~aG~~~~~  198 (234)
T 3u26_A          168 A----GVKGEEAVYVGDNPV---------------KDCGGSKNLGMTSIL  198 (234)
T ss_dssp             H----TCCGGGEEEEESCTT---------------TTHHHHHTTTCEEEE
T ss_pred             c----CCCchhEEEEcCCcH---------------HHHHHHHHcCCEEEE
Confidence            6    799999999999952               799999999998754

>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A

Probab=99.51  E-value=5.3e-15  Score=135.56  Aligned_cols=96  Identities=11%  Similarity=0.177  Sum_probs=83.7

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEE-EEecCCCC-CCCCchhHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQM-FVATQYDR-YRKPVPGMWEYLS  130 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~-~~~~~~~~-~rKP~~gm~~~~~  130 (369)
                      ++|++.+.|+.|++.|++++|+||..            ...+..+++.+|+.  |+. +++.+... .+||+|.+++.++
T Consensus       111 ~~~~~~~~l~~l~~~g~~~~i~s~~~------------~~~~~~~l~~~~l~~~f~~~i~~~~~~~~~~Kp~~~~~~~~~  178 (259)
T 4eek_A          111 AIEGAAETLRALRAAGVPFAIGSNSE------------RGRLHLKLRVAGLTELAGEHIYDPSWVGGRGKPHPDLYTFAA  178 (259)
T ss_dssp             ECTTHHHHHHHHHHHTCCEEEECSSC------------HHHHHHHHHHTTCHHHHCSCEECGGGGTTCCTTSSHHHHHHH
T ss_pred             cCccHHHHHHHHHHCCCeEEEEeCCC------------HHHHHHHHHhcChHhhccceEEeHhhcCcCCCCChHHHHHHH
Confidence            58999999999999999999999953            23456677888884  776 78888888 9999999999999


Q ss_pred             HHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         131 QEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       131 ~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +++    ++++++++||||+.                .|+.+|+++|+.++.
T Consensus       179 ~~l----gi~~~~~i~iGD~~----------------~Di~~a~~aG~~~i~  210 (259)
T 4eek_A          179 QQL----GILPERCVVIEDSV----------------TGGAAGLAAGATLWG  210 (259)
T ss_dssp             HHT----TCCGGGEEEEESSH----------------HHHHHHHHHTCEEEE
T ss_pred             HHc----CCCHHHEEEEcCCH----------------HHHHHHHHCCCEEEE
Confidence            996    79999999999999                899999999999753

>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 1.65A {Bacteroides thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A

Probab=99.51  E-value=6.3e-15  Score=132.86  Aligned_cols=98  Identities=15%  Similarity=0.244  Sum_probs=80.3

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHH---HHcCC--CeEEEEecCCCCCCCCchhHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKII---KSLNV--PVQMFVATQYDRYRKPVPGMWEYL  129 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l---~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~  129 (369)
                      ++|++.+.|+.|++. ++++|+||.+         ......+...+   +.+|+  .|+.++++.....+||+|.+|+.+
T Consensus       113 ~~~~~~~~l~~l~~~-~~~~i~Sn~~---------~~~~~~~~~~l~~~~~~~l~~~fd~i~~~~~~~~~KP~~~~~~~~  182 (229)
T 4dcc_A          113 IPTYKLDLLLKLREK-YVVYLLSNTN---------DIHWKWVCKNAFPYRTFKVEDYFEKTYLSYEMKMAKPEPEIFKAV  182 (229)
T ss_dssp             CCHHHHHHHHHHTTT-SEEEEEECCC---------HHHHHHHHHHTSCBTTBCHHHHCSEEEEHHHHTCCTTCHHHHHHH
T ss_pred             ccHHHHHHHHHHHhc-CcEEEEECCC---------hHHHHHHHhhhhhhccCCHHHhCCEEEeecccCCCCCCHHHHHHH
Confidence            469999999999998 9999999953         12222222333   55666  377788888888999999999999


Q ss_pred             HHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         130 SQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       130 ~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      ++++    ++++++++||||+.                .|+.+|+++|+.++.
T Consensus       183 ~~~~----g~~~~~~~~vGD~~----------------~Di~~a~~aG~~~i~  215 (229)
T 4dcc_A          183 TEDA----GIDPKETFFIDDSE----------------INCKVAQELGISTYT  215 (229)
T ss_dssp             HHHH----TCCGGGEEEECSCH----------------HHHHHHHHTTCEEEC
T ss_pred             HHHc----CCCHHHeEEECCCH----------------HHHHHHHHcCCEEEE
Confidence            9996    79999999999999                899999999999864

>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A

Probab=99.51  E-value=9.3e-15  Score=132.61  Aligned_cols=95  Identities=12%  Similarity=0.164  Sum_probs=79.6

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--Ce--EEEEecCCCCCCCCchhHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PV--QMFVATQYDRYRKPVPGMWEYLS  130 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~--~~~~~~~~~~~rKP~~gm~~~~~  130 (369)
                      ++|++.+.|+.|++.|++++|+||...        ..    +...++. ++  .|  +.+++.+....+||+|.+++.++
T Consensus       110 ~~~~~~~~l~~l~~~g~~~~i~t~~~~--------~~----~~~~l~~-~l~~~f~~d~i~~~~~~~~~kp~~~~~~~~~  176 (243)
T 3qxg_A          110 RMPGAWELLQKVKSEGLTPMVVTGSGQ--------LS----LLERLEH-NFPGMFHKELMVTAFDVKYGKPNPEPYLMAL  176 (243)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEECCCCC--------HH----HHTTHHH-HSTTTCCGGGEECTTTCSSCTTSSHHHHHHH
T ss_pred             CCCCHHHHHHHHHHcCCcEEEEeCCcH--------HH----HHHHHHH-hHHHhcCcceEEeHHhCCCCCCChHHHHHHH
Confidence            579999999999999999999999531        12    2233343 44  47  77888888889999999999999


Q ss_pred             HHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         131 QEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       131 ~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +++    ++++++++||||+.                .|+.+|+++|+.++.
T Consensus       177 ~~l----g~~~~~~i~vGD~~----------------~Di~~a~~aG~~~i~  208 (243)
T 3qxg_A          177 KKG----GLKADEAVVIENAP----------------LGVEAGHKAGIFTIA  208 (243)
T ss_dssp             HHT----TCCGGGEEEEECSH----------------HHHHHHHHTTCEEEE
T ss_pred             HHc----CCCHHHeEEEeCCH----------------HHHHHHHHCCCEEEE
Confidence            996    79999999999999                899999999998864

>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, haloacid dehalogenase-like F PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae} SCOP: c.108.1.3

Probab=99.50  E-value=2.1e-14  Score=124.87  Aligned_cols=93  Identities=18%  Similarity=0.285  Sum_probs=79.5

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|+++|++++|+||.+         .    .+...++.+++.  |+.+++.+....+||+|.+++.++++
T Consensus        83 ~~~~~~~~l~~l~~~g~~~~i~t~~~---------~----~~~~~l~~~~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~  149 (190)
T 2fi1_A           83 LFEGVSDLLEDISNQGGRHFLVSHRN---------D----QVLEILEKTSIAAYFTEVVTSSSGFKRKPNPESMLYLREK  149 (190)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEECSSC---------T----HHHHHHHHTTCGGGEEEEECGGGCCCCTTSCHHHHHHHHH
T ss_pred             cCcCHHHHHHHHHHCCCcEEEEECCc---------H----HHHHHHHHcCCHhheeeeeeccccCCCCCCHHHHHHHHHH
Confidence            57999999999999999999999943         1    234556778873  88888888888999999999999998


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    +++  +++||||+.                .|+.+|+++|+.++.
T Consensus       150 ~----~~~--~~~~iGD~~----------------~Di~~a~~aG~~~~~  177 (190)
T 2fi1_A          150 Y----QIS--SGLVIGDRP----------------IDIEAGQAAGLDTHL  177 (190)
T ss_dssp             T----TCS--SEEEEESSH----------------HHHHHHHHTTCEEEE
T ss_pred             c----CCC--eEEEEcCCH----------------HHHHHHHHcCCeEEE
Confidence            6    576  999999998                899999999998753

>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain- containing protein 1A; HDHD1A, haloacid dehalogenase-like hydrolase domain containing 1A; 2.00A {Homo sapiens}

Probab=99.50  E-value=7.3e-15  Score=133.88  Aligned_cols=97  Identities=13%  Similarity=0.156  Sum_probs=77.3

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecC--CCCCCCCchhHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQ--YDRYRKPVPGMWEYLS  130 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~--~~~~rKP~~gm~~~~~  130 (369)
                      ++|++.+.|+.|++.|++++|+||..        ...+...+..   .+++  .|+.+++.+  ....+||+|.+++.++
T Consensus       113 ~~~~~~~~l~~l~~~g~~~~i~sn~~--------~~~~~~~l~~---~~~l~~~f~~~~~~~~~~~~~~Kp~~~~~~~~~  181 (250)
T 3l5k_A          113 LMPGAEKLIIHLRKHGIPFALATSSR--------SASFDMKTSR---HKEFFSLFSHIVLGDDPEVQHGKPDPDIFLACA  181 (250)
T ss_dssp             BCTTHHHHHHHHHHTTCCEEEECSCC--------HHHHHHHTTT---CHHHHTTSSCEECTTCTTCCSCTTSTHHHHHHH
T ss_pred             CCCCHHHHHHHHHhCCCcEEEEeCCC--------HHHHHHHHHh---ccCHHhheeeEEecchhhccCCCCChHHHHHHH
Confidence            68999999999999999999999953        1222222211   1122  467777777  7789999999999999


Q ss_pred             HHhcCCccccC--CccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         131 QEKNGDLAIDI--SQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       131 ~~~~~~~~i~~--~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +++    ++++  ++++||||+.                .|+.+|+++|+.++.
T Consensus       182 ~~l----gi~~~~~~~i~iGD~~----------------~Di~~a~~aG~~~i~  215 (250)
T 3l5k_A          182 KRF----SPPPAMEKCLVFEDAP----------------NGVEAALAAGMQVVM  215 (250)
T ss_dssp             HTS----SSCCCGGGEEEEESSH----------------HHHHHHHHTTCEEEE
T ss_pred             HHc----CCCCCcceEEEEeCCH----------------HHHHHHHHcCCEEEE
Confidence            986    6777  9999999999                899999999998854

>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*

Probab=99.48  E-value=6.4e-14  Score=122.74  Aligned_cols=117  Identities=15%  Similarity=0.189  Sum_probs=91.2

Q ss_pred             CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHc
Q psy4598          24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSL  103 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l  103 (369)
                      +.|+++||+||||+....  .+......+..+.+...++|++|+++|++++|+||.+.            ..+..+++.+
T Consensus         7 ~ik~i~~DlDGTL~~~~~--~~~~~~~~~~~~~~~~~~~l~~L~~~G~~~~i~Tg~~~------------~~~~~~~~~l   72 (180)
T 1k1e_A            7 NIKFVITDVDGVLTDGQL--HYDANGEAIKSFHVRDGLGIKMLMDADIQVAVLSGRDS------------PILRRRIADL   72 (180)
T ss_dssp             GCCEEEEECTTTTSCSEE--EEETTEEEEEEEEHHHHHHHHHHHHTTCEEEEEESCCC------------HHHHHHHHHH
T ss_pred             CCeEEEEeCCCCcCCCCe--eeccCcceeeeeccchHHHHHHHHHCCCeEEEEeCCCc------------HHHHHHHHHc
Confidence            468999999999996431  22222233444678899999999999999999999542            2345667788


Q ss_pred             CCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         104 NVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       104 ~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      |+.-  ++.     ..||++.+++.+++++    ++++++++||||+.                .|+.+|.++|+.+.
T Consensus        73 gl~~--~~~-----~~k~k~~~~~~~~~~~----~~~~~~~~~vGD~~----------------~Di~~~~~ag~~~~  123 (180)
T 1k1e_A           73 GIKL--FFL-----GKLEKETACFDLMKQA----GVTAEQTAYIGDDS----------------VDLPAFAACGTSFA  123 (180)
T ss_dssp             TCCE--EEE-----SCSCHHHHHHHHHHHH----TCCGGGEEEEECSG----------------GGHHHHHHSSEEEE
T ss_pred             CCce--eec-----CCCCcHHHHHHHHHHc----CCCHHHEEEECCCH----------------HHHHHHHHcCCeEE
Confidence            8742  221     3599999999999986    68999999999999                89999999999975

>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomic protein structure initiative, midwest center for structural genomics, MCSG; HET: G1P; 2.00A {Escherichia coli} SCOP: c.108.1.2

Probab=99.48  E-value=2.3e-14  Score=126.22  Aligned_cols=99  Identities=15%  Similarity=0.213  Sum_probs=76.7

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCchhHHHHHHHHhc
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKN  134 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~  134 (369)
                      ++|++.+.|+.|+++|++++|+||.+.........     ....+..    .|+.++++.....+||+|.++..+++++ 
T Consensus        92 ~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~~~-----~~~~l~~----~f~~~~~~~~~~~~Kp~~~~~~~~~~~~-  161 (206)
T 2b0c_A           92 LRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPE-----EYPEIRD----AADHIYLSQDLGMRKPEARIYQHVLQAE-  161 (206)
T ss_dssp             ECHHHHHHHHHHHHTTCEEEEEECCCCCTTSCCGG-----GCHHHHH----HCSEEEEHHHHTCCTTCHHHHHHHHHHH-
T ss_pred             cCccHHHHHHHHHHCCCeEEEEECCChHHHHHHHH-----hccChhh----heeeEEEecccCCCCCCHHHHHHHHHHc-
Confidence            68999999999999999999999965432211100     0001111    2566677777778999999999999986 


Q ss_pred             CCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         135 GDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       135 ~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                         ++++++++||||+.                .|+.+|.++|+.++.
T Consensus       162 ---~~~~~~~~~vgD~~----------------~Di~~a~~aG~~~~~  190 (206)
T 2b0c_A          162 ---GFSPSDTVFFDDNA----------------DNIEGANQLGITSIL  190 (206)
T ss_dssp             ---TCCGGGEEEEESCH----------------HHHHHHHTTTCEEEE
T ss_pred             ---CCCHHHeEEeCCCH----------------HHHHHHHHcCCeEEE
Confidence               78999999999999                899999999999853

>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU sensitivity of transcription elongation II; 1.70A {Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A*

Probab=99.48  E-value=7.1e-14  Score=130.03  Aligned_cols=93  Identities=17%  Similarity=0.244  Sum_probs=78.5

Q ss_pred             ccccHHHHHHHHHHCCc--EEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCC----CCCCCchhHH
Q psy4598          55 LFSNIESVLKQYLDDGY--KLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYD----RYRKPVPGMW  126 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~--~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~----~~rKP~~gm~  126 (369)
                      ++|++.+.|+.|++.|+  +++|+||..            ...+..+++.+|+  .|+.+++++..    ..+||+|.++
T Consensus       143 ~~p~~~~~L~~L~~~g~~~~l~i~Tn~~------------~~~~~~~l~~~gl~~~fd~v~~~~~~~~~~~~~Kp~~~~~  210 (282)
T 3nuq_A          143 PDIPLRNMLLRLRQSGKIDKLWLFTNAY------------KNHAIRCLRLLGIADLFDGLTYCDYSRTDTLVCKPHVKAF  210 (282)
T ss_dssp             CCHHHHHHHHHHHHSSSCSEEEEECSSC------------HHHHHHHHHHHTCTTSCSEEECCCCSSCSSCCCTTSHHHH
T ss_pred             cChhHHHHHHHHHhCCCCceEEEEECCC------------hHHHHHHHHhCCcccccceEEEeccCCCcccCCCcCHHHH
Confidence            58999999999999999  999999943            2344566677777  47777766433    5679999999


Q ss_pred             HHHHHHhcCCccccC-CccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCC
Q psy4598         127 EYLSQEKNGDLAIDI-SQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLA  179 (369)
Q Consensus       127 ~~~~~~~~~~~~i~~-~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~  179 (369)
                      +.+++++    ++++ ++++||||+.                .|+.+|+++|+.
T Consensus       211 ~~~~~~l----gi~~~~~~i~vGD~~----------------~Di~~a~~aG~~  244 (282)
T 3nuq_A          211 EKAMKES----GLARYENAYFIDDSG----------------KNIETGIKLGMK  244 (282)
T ss_dssp             HHHHHHH----TCCCGGGEEEEESCH----------------HHHHHHHHHTCS
T ss_pred             HHHHHHc----CCCCcccEEEEcCCH----------------HHHHHHHHCCCe
Confidence            9999996    7998 9999999999                899999999994

>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}

Probab=99.48  E-value=1.3e-13  Score=120.61  Aligned_cols=114  Identities=12%  Similarity=0.199  Sum_probs=86.0

Q ss_pred             CceEEEEecCCceeecCCCCCCCCCccccccc--cccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHH
Q psy4598          24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLL--FSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIK  101 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~--~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~  101 (369)
                      ..|.++||+||||++..  ..+.........+  .+++  .|++|+++|++++|+||..            ...+..+++
T Consensus        11 ~~k~vifD~DGTL~d~~--~~~~~~~~~~~~~~~~~~~--~l~~L~~~g~~~~i~T~~~------------~~~~~~~~~   74 (176)
T 3mmz_A           11 DIDAVVLDFDGTQTDDR--VLIDSDGREFVSVHRGDGL--GIAALRKSGLTMLILSTEQ------------NPVVAARAR   74 (176)
T ss_dssp             GCSEEEECCTTTTSCSC--CEECTTCCEEEEEEHHHHH--HHHHHHHTTCEEEEEESSC------------CHHHHHHHH
T ss_pred             cCCEEEEeCCCCcCcCC--EeecCCccHhHhcccccHH--HHHHHHHCCCeEEEEECcC------------hHHHHHHHH
Confidence            45899999999999732  2222222222211  2222  7999999999999999953            234567788


Q ss_pred             HcCCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         102 SLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       102 ~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      .+|+.   +++.     .||++.+++.+++++    ++++++++||||+.                .|+.+|.++|+.+.
T Consensus        75 ~lgi~---~~~~-----~~~k~~~l~~~~~~~----~~~~~~~~~vGD~~----------------nD~~~~~~ag~~v~  126 (176)
T 3mmz_A           75 KLKIP---VLHG-----IDRKDLALKQWCEEQ----GIAPERVLYVGNDV----------------NDLPCFALVGWPVA  126 (176)
T ss_dssp             HHTCC---EEES-----CSCHHHHHHHHHHHH----TCCGGGEEEEECSG----------------GGHHHHHHSSEEEE
T ss_pred             HcCCe---eEeC-----CCChHHHHHHHHHHc----CCCHHHEEEEcCCH----------------HHHHHHHHCCCeEE
Confidence            88987   3332     399999999999986    78999999999999                89999999999874

>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii}

Probab=99.46  E-value=1.5e-14  Score=129.82  Aligned_cols=93  Identities=15%  Similarity=0.250  Sum_probs=69.8

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|+++|++++|+||.+         .    .+..+++.+|+.  |+.+++++....+||+|.+|+.++++
T Consensus        96 ~~~~~~~~l~~l~~~g~~~~i~Tn~~---------~----~~~~~l~~~gl~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~  162 (220)
T 2zg6_A           96 LYDDTLEFLEGLKSNGYKLALVSNAS---------P----RVKTLLEKFDLKKYFDALALSYEIKAVKPNPKIFGFALAK  162 (220)
T ss_dssp             ECTTHHHHHHHHHTTTCEEEECCSCH---------H----HHHHHHHHHTCGGGCSEEC-----------CCHHHHHHHH
T ss_pred             ECcCHHHHHHHHHHCCCEEEEEeCCc---------H----HHHHHHHhcCcHhHeeEEEeccccCCCCCCHHHHHHHHHH
Confidence            57999999999999999999999942         1    245667888884  88888888888999999999999998


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcc-cHHHHHhCCCCccCc
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACT-DHLFAFNLNLAFFTP  183 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~-D~~~A~n~Gi~f~~p  183 (369)
                      +    ++++   +||||+.                . |+.+|+++|++++..
T Consensus       163 ~----~~~~---~~vgD~~----------------~~Di~~a~~aG~~~i~v  191 (220)
T 2zg6_A          163 V----GYPA---VHVGDIY----------------ELDYIGAKRSYVDPILL  191 (220)
T ss_dssp             H----CSSE---EEEESSC----------------CCCCCCSSSCSEEEEEB
T ss_pred             c----CCCe---EEEcCCc----------------hHhHHHHHHCCCeEEEE
Confidence            6    5766   9999999                6 999999999998644

>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp}

Probab=99.46  E-value=4.3e-14  Score=135.39  Aligned_cols=95  Identities=14%  Similarity=0.066  Sum_probs=78.4

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEe----------cCCCCCCCCc
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVA----------TQYDRYRKPV  122 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~----------~~~~~~rKP~  122 (369)
                      ++||+.+.|+.|+++|++++|+||..            ...+..+++.+|+.  |...+.          ......+||+
T Consensus       180 l~pg~~e~L~~Lk~~G~~v~IvSn~~------------~~~~~~~l~~lgl~~~f~~~l~~~dg~~tg~i~~~~~~~kpk  247 (317)
T 4eze_A          180 LSPGLLTILPVIKAKGFKTAIISGGL------------DIFTQRLKARYQLDYAFSNTVEIRDNVLTDNITLPIMNAANK  247 (317)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEEEEEE------------HHHHHHHHHHHTCSEEEEECEEEETTEEEEEECSSCCCHHHH
T ss_pred             ECcCHHHHHHHHHhCCCEEEEEeCcc------------HHHHHHHHHHcCCCeEEEEEEEeeCCeeeeeEecccCCCCCC
Confidence            68999999999999999999999932            34566778888884  443322          2234467999


Q ss_pred             hhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         123 PGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       123 ~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      |.++..+++++    ++++++++||||+.                +|+.+|+++|+.+.
T Consensus       248 p~~~~~~~~~l----gv~~~~~i~VGDs~----------------~Di~aa~~AG~~va  286 (317)
T 4eze_A          248 KQTLVDLAARL----NIATENIIACGDGA----------------NDLPMLEHAGTGIA  286 (317)
T ss_dssp             HHHHHHHHHHH----TCCGGGEEEEECSG----------------GGHHHHHHSSEEEE
T ss_pred             HHHHHHHHHHc----CCCcceEEEEeCCH----------------HHHHHHHHCCCeEE
Confidence            99999999986    78999999999999                89999999999874

>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}

Probab=99.46  E-value=1.6e-13  Score=122.38  Aligned_cols=117  Identities=18%  Similarity=0.200  Sum_probs=91.9

Q ss_pred             CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHc
Q psy4598          24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSL  103 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l  103 (369)
                      ..|.++||+||||+.+.  ..+......+..+.+.....|+.|+++|++++|+||++            ...+..+++.+
T Consensus        24 ~ik~vifD~DGtL~d~~--~~~~~~~~~~~~~~~~d~~~l~~L~~~G~~~~ivT~~~------------~~~~~~~l~~l   89 (195)
T 3n07_A           24 QIKLLICDVDGVFSDGL--IYMGNQGEELKTFHTRDGYGVKALMNAGIEIAIITGRR------------SQIVENRMKAL   89 (195)
T ss_dssp             TCCEEEECSTTTTSCSC--CEECTTSCEECCCCTTHHHHHHHHHHTTCEEEEECSSC------------CHHHHHHHHHT
T ss_pred             CCCEEEEcCCCCcCCCc--EEEccCchhhheeecccHHHHHHHHHCCCEEEEEECcC------------HHHHHHHHHHc
Confidence            36899999999999753  12333334555556666778999999999999999964            23456778899


Q ss_pred             CCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         104 NVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       104 ~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      |+..  ++.     ..||++.++..+++++    ++++++++||||+.                .|+.++.++|+.+.
T Consensus        90 gi~~--~~~-----~~k~k~~~~~~~~~~~----~~~~~~~~~vGD~~----------------nDi~~~~~ag~~va  140 (195)
T 3n07_A           90 GISL--IYQ-----GQDDKVQAYYDICQKL----AIAPEQTGYIGDDL----------------IDWPVMEKVALRVC  140 (195)
T ss_dssp             TCCE--EEC-----SCSSHHHHHHHHHHHH----CCCGGGEEEEESSG----------------GGHHHHTTSSEEEE
T ss_pred             CCcE--Eee-----CCCCcHHHHHHHHHHh----CCCHHHEEEEcCCH----------------HHHHHHHHCCCEEE
Confidence            9752  221     3499999999999986    79999999999999                89999999999874

>3umg_A Haloacid dehalogenase; defluorinase, hydrolase; 2.25A {Rhodococcus jostii}

Probab=99.46  E-value=2.4e-14  Score=129.47  Aligned_cols=95  Identities=16%  Similarity=0.160  Sum_probs=82.1

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCchhHHHHHHHHhc
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKN  134 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~  134 (369)
                      ++|++.+.|+.|++. ++++|+||.+            ...+..+++.+|+.|+.+++.+....+||+|.+|+.+++++ 
T Consensus       117 ~~~~~~~~l~~l~~~-~~~~i~t~~~------------~~~~~~~l~~~~~~f~~~~~~~~~~~~kp~~~~~~~~~~~l-  182 (254)
T 3umg_A          117 PWPDSVPGLTAIKAE-YIIGPLSNGN------------TSLLLDMAKNAGIPWDVIIGSDINRKYKPDPQAYLRTAQVL-  182 (254)
T ss_dssp             BCTTHHHHHHHHHHH-SEEEECSSSC------------HHHHHHHHHHHTCCCSCCCCHHHHTCCTTSHHHHHHHHHHT-
T ss_pred             CCcCHHHHHHHHHhC-CeEEEEeCCC------------HHHHHHHHHhCCCCeeEEEEcCcCCCCCCCHHHHHHHHHHc-
Confidence            589999999999997 9999999943            23455667788888877777777788999999999999996 


Q ss_pred             CCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         135 GDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       135 ~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                         ++++++++||||+.                .|+.+|+++|+.++.
T Consensus       183 ---gi~~~~~~~iGD~~----------------~Di~~a~~aG~~~~~  211 (254)
T 3umg_A          183 ---GLHPGEVMLAAAHN----------------GDLEAAHATGLATAF  211 (254)
T ss_dssp             ---TCCGGGEEEEESCH----------------HHHHHHHHTTCEEEE
T ss_pred             ---CCChHHEEEEeCCh----------------HhHHHHHHCCCEEEE
Confidence               79999999999998                899999999999853

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.45  E-value=2.6e-13  Score=128.08  Aligned_cols=98  Identities=22%  Similarity=0.337  Sum_probs=83.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC-CcEEEeCCcchhH---------------------HHHHHHHHHHH---hCCCc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL-NYTTVNRDTLGSW---------------------QKCVSVMKAAL---DSGLS  325 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~-~~~~i~~D~~~~~---------------------~~~~~~~~~~l---~~g~~  325 (369)
                      ||.+|+|+|+|||||||+++.|++.+ ++.+|+.|.++..                     +.+...+..++   +.|..
T Consensus         1 M~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D~~r~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~   80 (301)
T 1ltq_A            1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKG   80 (301)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCCC---CCHHHHHHHHHHHHHHHHHHTTSCTTCCE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhCCCcEEecccHHHHHhccCCcccccccchhhhhHHHHHHHHHHHHHHhhccCCCE
Confidence            56899999999999999999999974 8999998865310                     11234556677   78889


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         326 VVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       326 vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      ||+|+++.+...|..+.++++..++++.+|++++|.+++.+|.
T Consensus        81 vi~d~~~~~~~~~~~l~~~~~~~~~~~~~i~l~~~~e~~~~R~  123 (301)
T 1ltq_A           81 VIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRN  123 (301)
T ss_dssp             EEECSCCCCHHHHHHHHHHHHHTTCEEEEEECCCCHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHHHHHHHcCCcEEEEEEECCHHHHHHHH
Confidence            9999999999999999999999999999999999999999985

>3umc_A Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeruginosa}

Probab=99.45  E-value=3.4e-14  Score=129.08  Aligned_cols=95  Identities=15%  Similarity=0.124  Sum_probs=82.2

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCchhHHHHHHHHhc
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKN  134 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~  134 (369)
                      ++|++.+.|+.|++. ++++|+||..            ...+..+++.+|+.|+.+++.+....+||+|.+|+.+++++ 
T Consensus       121 ~~~~~~~~l~~l~~~-~~~~i~s~~~------------~~~~~~~l~~~g~~f~~~~~~~~~~~~kp~~~~~~~~~~~l-  186 (254)
T 3umc_A          121 PWPDTLAGMHALKAD-YWLAALSNGN------------TALMLDVARHAGLPWDMLLCADLFGHYKPDPQVYLGACRLL-  186 (254)
T ss_dssp             ECTTHHHHHHHHTTT-SEEEECCSSC------------HHHHHHHHHHHTCCCSEECCHHHHTCCTTSHHHHHHHHHHH-
T ss_pred             CCccHHHHHHHHHhc-CeEEEEeCCC------------HHHHHHHHHHcCCCcceEEeecccccCCCCHHHHHHHHHHc-
Confidence            479999999999885 9999999943            23455667888888888888877789999999999999996 


Q ss_pred             CCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         135 GDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       135 ~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                         ++++++++||||+.                .|+.+|+++|+.++.
T Consensus       187 ---gi~~~~~~~iGD~~----------------~Di~~a~~aG~~~~~  215 (254)
T 3umc_A          187 ---DLPPQEVMLCAAHN----------------YDLKAARALGLKTAF  215 (254)
T ss_dssp             ---TCCGGGEEEEESCH----------------HHHHHHHHTTCEEEE
T ss_pred             ---CCChHHEEEEcCch----------------HhHHHHHHCCCeEEE
Confidence               79999999999998                899999999999853

>3vay_A HAD-superfamily hydrolase; rossmann fold, haloacid dehalogenase; 1.98A {Pseudomonas syringae PV}

Probab=99.45  E-value=7.3e-14  Score=124.95  Aligned_cols=92  Identities=17%  Similarity=0.214  Sum_probs=78.9

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|++. ++++|+||.+..                 ++.+|+.  |+.+++.+....+||+|.+++.++++
T Consensus       106 ~~~~~~~~l~~l~~~-~~~~i~t~~~~~-----------------l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~  167 (230)
T 3vay_A          106 IFPEVQPTLEILAKT-FTLGVITNGNAD-----------------VRRLGLADYFAFALCAEDLGIGKPDPAPFLEALRR  167 (230)
T ss_dssp             BCTTHHHHHHHHHTT-SEEEEEESSCCC-----------------GGGSTTGGGCSEEEEHHHHTCCTTSHHHHHHHHHH
T ss_pred             cCcCHHHHHHHHHhC-CeEEEEECCchh-----------------hhhcCcHHHeeeeEEccccCCCCcCHHHHHHHHHH
Confidence            689999999999998 999999996421                 3566764  78788887788899999999999999


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      +    ++++++++||||+..               +|+.+|+++|+.++..
T Consensus       168 ~----~~~~~~~~~vGD~~~---------------~Di~~a~~aG~~~~~v  199 (230)
T 3vay_A          168 A----KVDASAAVHVGDHPS---------------DDIAGAQQAGMRAIWY  199 (230)
T ss_dssp             H----TCCGGGEEEEESCTT---------------TTHHHHHHTTCEEEEE
T ss_pred             h----CCCchheEEEeCChH---------------HHHHHHHHCCCEEEEE
Confidence            6    799999999999962               6999999999998653

>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; 2633731, structural genomics, joint center for structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis} SCOP: c.108.1.20

Probab=99.45  E-value=1.5e-14  Score=131.58  Aligned_cols=94  Identities=10%  Similarity=0.053  Sum_probs=73.1

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC-CeEEEEecCCCC--------CCCCchhH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV-PVQMFVATQYDR--------YRKPVPGM  125 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i-~~~~~~~~~~~~--------~rKP~~gm  125 (369)
                      ++|++.+.|+.|+++|++++|+||++            ...+..+++  |+ +++.+++.+...        ++||+|.+
T Consensus        78 ~~pg~~~~l~~L~~~g~~~~ivS~~~------------~~~~~~~l~--~l~~~~~v~~~~~~~~~~~~~~~~~kp~p~~  143 (236)
T 2fea_A           78 IREGFREFVAFINEHEIPFYVISGGM------------DFFVYPLLE--GIVEKDRIYCNHASFDNDYIHIDWPHSCKGT  143 (236)
T ss_dssp             BCTTHHHHHHHHHHHTCCEEEEEEEE------------HHHHHHHHT--TTSCGGGEEEEEEECSSSBCEEECTTCCCTT
T ss_pred             CCccHHHHHHHHHhCCCeEEEEeCCc------------HHHHHHHHh--cCCCCCeEEeeeeEEcCCceEEecCCCCccc
Confidence            68999999999999999999999953            123344454  54 345455554332        38999995


Q ss_pred             -HH-------HHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         126 -WE-------YLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       126 -~~-------~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                       +.       .+++++    ++++++++||||+.                +|+.+|+++|+.++.
T Consensus       144 ~~~~~~~~K~~~~~~~----~~~~~~~~~vGDs~----------------~Di~~a~~aG~~~~~  188 (236)
T 2fea_A          144 CSNQCGCCKPSVIHEL----SEPNQYIIMIGDSV----------------TDVEAAKLSDLCFAR  188 (236)
T ss_dssp             CCSCCSSCHHHHHHHH----CCTTCEEEEEECCG----------------GGHHHHHTCSEEEEC
T ss_pred             cccccCCcHHHHHHHH----hccCCeEEEEeCCh----------------HHHHHHHhCCeeeec
Confidence             54       777876    68999999999998                899999999999874

>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*

Probab=99.44  E-value=1.9e-13  Score=120.71  Aligned_cols=117  Identities=16%  Similarity=0.137  Sum_probs=86.5

Q ss_pred             CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHc
Q psy4598          24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSL  103 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l  103 (369)
                      ..|+++||+||||+...  ..|.........+...-...|++|+++|++++|+||++.            ..+..+++.+
T Consensus        25 ~ik~vifD~DGTL~~~~--~~~~~~~~~~~~~~~~d~~~l~~L~~~g~~v~ivT~~~~------------~~~~~~l~~l   90 (188)
T 2r8e_A           25 NIRLLILDVDGVLSDGL--IYMGNNGEELKAFNVRDGYGIRCALTSDIEVAIITGRKA------------KLVEDRCATL   90 (188)
T ss_dssp             TCSEEEECCCCCCBCSE--EEEETTSCEEEEEEHHHHHHHHHHHTTTCEEEEECSSCC------------HHHHHHHHHH
T ss_pred             cCCEEEEeCCCCcCCCC--EEecCCCcEEEEeecccHHHHHHHHHCCCeEEEEeCCCh------------HHHHHHHHHc
Confidence            56899999999999632  112222222222222233589999999999999999652            2345667778


Q ss_pred             CCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         104 NVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       104 ~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      |+.  .++.     ..||+|.+++.+++++    ++++++++||||+.                +|+.+|.++|+.+.
T Consensus        91 gl~--~~~~-----~~kpk~~~~~~~~~~~----g~~~~~~~~iGD~~----------------~Di~~a~~ag~~~~  141 (188)
T 2r8e_A           91 GIT--HLYQ-----GQSNKLIAFSDLLEKL----AIAPENVAYVGDDL----------------IDWPVMEKVGLSVA  141 (188)
T ss_dssp             TCC--EEEC-----SCSCSHHHHHHHHHHH----TCCGGGEEEEESSG----------------GGHHHHTTSSEEEE
T ss_pred             CCc--eeec-----CCCCCHHHHHHHHHHc----CCCHHHEEEECCCH----------------HHHHHHHHCCCEEE
Confidence            874  1221     3699999999999986    68899999999999                89999999999975

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=99.44  E-value=5e-13  Score=117.38  Aligned_cols=98  Identities=15%  Similarity=0.237  Sum_probs=76.2

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh------------H---------HHHHHHHHHHHhCCCcEEEe
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS------------W---------QKCVSVMKAALDSGLSVVVD  329 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~------------~---------~~~~~~~~~~l~~g~~vIiD  329 (369)
                      ++.+|+|+|+|||||||+++.|++.+++.+++.|.++.            |         +.+...+...++.|..||+|
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~vi~d   83 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKEVMFDGLGWSDREWSRRVGATAIMMLYHTAATILQSGQSLIME   83 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHCCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHHHHHHhcCccchHHHHHhhHHHHHHHHHHHHHHHhCCCeEEEe
Confidence            46799999999999999999999999999999998742            1         11122345567789999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         330 NTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       330 ~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      .++.....+..+.+++...+.+..+|++++|.+++.+|.
T Consensus        84 ~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~  122 (193)
T 2rhm_A           84 SNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERI  122 (193)
T ss_dssp             ECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHH
Confidence            998322233456666677778899999999999999884

>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6

Probab=99.44  E-value=1.3e-13  Score=120.09  Aligned_cols=96  Identities=26%  Similarity=0.371  Sum_probs=81.2

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|++.|++++|+||...            ..+. .++.+++  .|+.+++......+||++.++..++++
T Consensus        86 ~~~~~~~~l~~l~~~g~~~~i~s~~~~------------~~~~-~~~~~~~~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~  152 (207)
T 2go7_A           86 LMPGAREVLAWADESGIQQFIYTHKGN------------NAFT-ILKDLGVESYFTEILTSQSGFVRKPSPEAATYLLDK  152 (207)
T ss_dssp             ECTTHHHHHHHHHHTTCEEEEECSSCT------------HHHH-HHHHHTCGGGEEEEECGGGCCCCTTSSHHHHHHHHH
T ss_pred             eCcCHHHHHHHHHHCCCeEEEEeCCch------------HHHH-HHHHcCchhheeeEEecCcCCCCCCCcHHHHHHHHH
Confidence            579999999999999999999999531            1233 5566676  378888888788899999999999998


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      +    +++++++++|||+.                .|+.+|.++|+.++..
T Consensus       153 ~----~i~~~~~~~iGD~~----------------nDi~~~~~aG~~~i~~  183 (207)
T 2go7_A          153 Y----QLNSDNTYYIGDRT----------------LDVEFAQNSGIQSINF  183 (207)
T ss_dssp             H----TCCGGGEEEEESSH----------------HHHHHHHHHTCEEEES
T ss_pred             h----CCCcccEEEECCCH----------------HHHHHHHHCCCeEEEE
Confidence            6    78999999999998                8999999999997543

>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, struc genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis} SCOP: c.108.1.14

Probab=99.43  E-value=8e-13  Score=121.81  Aligned_cols=47  Identities=17%  Similarity=0.111  Sum_probs=41.9

Q ss_pred             CCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         118 YRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       118 ~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      .+||+|.+|+.+++++    ++++++++||||+..               +|+.+|+++|++++..
T Consensus       181 ~~KP~p~~~~~~~~~~----~~~~~~~~~vGD~~~---------------~Di~~a~~aG~~~i~v  227 (264)
T 1yv9_A          181 IGKPKAIIMERAIAHL----GVEKEQVIMVGDNYE---------------TDIQSGIQNGIDSLLV  227 (264)
T ss_dssp             CSTTSHHHHHHHHHHH----CSCGGGEEEEESCTT---------------THHHHHHHHTCEEEEE
T ss_pred             cCCCCHHHHHHHHHHc----CCCHHHEEEECCCcH---------------HHHHHHHHcCCcEEEE
Confidence            6899999999999996    789999999999931               8999999999998644

>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6

Probab=99.43  E-value=1.1e-13  Score=122.66  Aligned_cols=96  Identities=10%  Similarity=0.172  Sum_probs=82.2

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|++.|++++|+||..            ...+..+++.+++.  |+.+++.......||++.+++.++++
T Consensus        95 ~~~~~~~~l~~l~~~g~~~~i~t~~~------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~~~~  162 (226)
T 1te2_A           95 LLPGVREAVALCKEQGLLVGLASASP------------LHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAK  162 (226)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEEESSC------------HHHHHHHHHHTTCGGGCSEEEECTTSSCCTTSTHHHHHHHHH
T ss_pred             cCccHHHHHHHHHHCCCcEEEEeCCc------------HHHHHHHHHhcCcHhhCcEEEeccccCCCCCChHHHHHHHHH
Confidence            57899999999999999999999943            22345567777874  77777877788899999999999998


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    +++++++++|||+.                .|+.+|+++|+.++.
T Consensus       163 ~----~i~~~~~i~iGD~~----------------nDi~~a~~aG~~~~~  192 (226)
T 1te2_A          163 L----GVDPLTCVALEDSV----------------NGMIASKAARMRSIV  192 (226)
T ss_dssp             H----TSCGGGEEEEESSH----------------HHHHHHHHTTCEEEE
T ss_pred             c----CCCHHHeEEEeCCH----------------HHHHHHHHcCCEEEE
Confidence            6    79999999999999                899999999999854

>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=99.43  E-value=9.7e-14  Score=122.95  Aligned_cols=97  Identities=14%  Similarity=0.171  Sum_probs=82.1

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|++.|++++|+||..            ...+...++.+++.  |+.+++.+.....||++.++..++++
T Consensus        90 ~~~~~~~~l~~l~~~g~~~~i~s~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~  157 (225)
T 3d6j_A           90 LFPDTLPTLTHLKKQGIRIGIISTKY------------RFRILSFLRNHMPDDWFDIIIGGEDVTHHKPDPEGLLLAIDR  157 (225)
T ss_dssp             ECTTHHHHHHHHHHHTCEEEEECSSC------------HHHHHHHHHTSSCTTCCSEEECGGGCSSCTTSTHHHHHHHHH
T ss_pred             cCcCHHHHHHHHHHCCCeEEEEECCC------------HHHHHHHHHHcCchhheeeeeehhhcCCCCCChHHHHHHHHH
Confidence            47899999999999999999999953            12345567777774  67777777777899999999999998


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      +    +++++++++|||+.                .|+.+|+++|+.++..
T Consensus       158 ~----~~~~~~~i~iGD~~----------------nDi~~~~~aG~~~~~~  188 (225)
T 3d6j_A          158 L----KACPEEVLYIGDST----------------VDAGTAAAAGVSFTGV  188 (225)
T ss_dssp             T----TCCGGGEEEEESSH----------------HHHHHHHHHTCEEEEE
T ss_pred             h----CCChHHeEEEcCCH----------------HHHHHHHHCCCeEEEE
Confidence            6    79999999999999                8999999999988643

>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0

Probab=99.42  E-value=4.5e-13  Score=118.83  Aligned_cols=117  Identities=16%  Similarity=0.178  Sum_probs=86.1

Q ss_pred             CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHc
Q psy4598          24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSL  103 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l  103 (369)
                      ..|.++||+||||+...  ..+......+..+...-...|+.|+++|++++|+||++.            ..+..+++.+
T Consensus        18 ~ik~vifD~DGtL~~~~--~~~~~~~~~~~~~~~~d~~~l~~L~~~g~~~~ivTn~~~------------~~~~~~l~~l   83 (191)
T 3n1u_A           18 KIKCLICDVDGVLSDGL--LHIDNHGNELKSFHVQDGMGLKLLMAAGIQVAIITTAQN------------AVVDHRMEQL   83 (191)
T ss_dssp             TCSEEEECSTTTTBCSC--CEECTTCCEECCBCHHHHHHHHHHHHTTCEEEEECSCCS------------HHHHHHHHHH
T ss_pred             cCCEEEEeCCCCCCCCc--eeecCCchhhhhccccChHHHHHHHHCCCeEEEEeCcCh------------HHHHHHHHHc
Confidence            46899999999998642  122222222322222222269999999999999999641            3455677888


Q ss_pred             CCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         104 NVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       104 ~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      |+..  ++.     ..||+|.++..+++++    ++++++++||||+.                .|+.+|.++|+.+.
T Consensus        84 gl~~--~~~-----~~kpk~~~~~~~~~~~----~~~~~~~~~vGD~~----------------~Di~~~~~ag~~~~  134 (191)
T 3n1u_A           84 GITH--YYK-----GQVDKRSAYQHLKKTL----GLNDDEFAYIGDDL----------------PDLPLIQQVGLGVA  134 (191)
T ss_dssp             TCCE--EEC-----SCSSCHHHHHHHHHHH----TCCGGGEEEEECSG----------------GGHHHHHHSSEEEE
T ss_pred             CCcc--cee-----CCCChHHHHHHHHHHh----CCCHHHEEEECCCH----------------HHHHHHHHCCCEEE
Confidence            8752  221     2399999999999986    78999999999999                89999999999873

>2b82_A APHA, class B acid phosphatase; DDDD acid phosphatase, metallo-ENZ hydrolase; HET: ADN; 1.25A {Escherichia coli} SCOP: c.108.1.12 PDB: 2b8j_A* 2hf7_A 1rmt_A* 1n9k_A 1rmq_A 1n8n_A* 1rmy_A* 2g1a_A* 3cz4_A 2heg_A* 1z5g_A 1z5u_A* 1z88_A 2aut_A

Probab=99.41  E-value=2.5e-13  Score=122.47  Aligned_cols=125  Identities=14%  Similarity=0.204  Sum_probs=83.4

Q ss_pred             CceEEEEecCCceeecCCCC------------CCCCCcccc----------ccccccHHHHHHHHHHCCcEEEEEecCCC
Q psy4598          24 SAKIASFDLDGTLITTKSGK------------VFPVDTHDW----------KLLFSNIESVLKQYLDDGYKLVIFTNQGA   81 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~sg~------------~~~~~~~d~----------~~~~p~v~~~L~~L~~~G~~i~i~TNq~g   81 (369)
                      +.|+++||+||||+.+....            .|......|          ...+|++.+.|++|+++|++++|+||++.
T Consensus        36 ~~kaviFDlDGTL~Ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~L~~~G~~l~ivTn~~~  115 (211)
T 2b82_A           36 PPMAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFWEKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGRSP  115 (211)
T ss_dssp             CCCEEEECCBTTTEECHHHHHHHHHHHCTTSSGGGGCHHHHHHHHTTGGGGCEECHHHHHHHHHHHHHTCEEEEEECSCC
T ss_pred             CCCEEEEcCCCCCCcCcHHHHHHHHHhhHHHHHHhhhHHHHHHHHHhHHhcCCCcHHHHHHHHHHHHCCCEEEEEcCCcH
Confidence            46899999999999863210            000000111          12467999999999999999999999764


Q ss_pred             cCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecC--CCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCC
Q psy4598          82 IGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQ--YDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAP  159 (369)
Q Consensus        82 i~~~~~~~~~~~~~i~~~l~~l~i~~~~~~~~~--~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~  159 (369)
                      ....    .    .+..+...++..+   .+..  ....+||+|.+|..+++++    ++    ++||||+.        
T Consensus       116 ~~~~----~----~l~~l~~~f~~i~---~~~~~~~~~~~KP~p~~~~~~~~~~----g~----~l~VGDs~--------  168 (211)
T 2b82_A          116 TKTE----T----VSKTLADNFHIPA---TNMNPVIFAGDKPGQNTKSQWLQDK----NI----RIFYGDSD--------  168 (211)
T ss_dssp             CSSC----C----HHHHHHHHTTCCT---TTBCCCEECCCCTTCCCSHHHHHHT----TE----EEEEESSH--------
T ss_pred             HHHH----H----HHHHHHHhcCccc---cccchhhhcCCCCCHHHHHHHHHHC----CC----EEEEECCH--------
Confidence            2211    1    1112222233210   1111  1235899999999999986    45    99999999        


Q ss_pred             CCCCCCCcccHHHHHhCCCCccCc
Q psy4598         160 KKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       160 ~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                              .|+++|+++||+++..
T Consensus       169 --------~Di~aA~~aG~~~i~v  184 (211)
T 2b82_A          169 --------NDITAARDVGARGIRI  184 (211)
T ss_dssp             --------HHHHHHHHTTCEEEEC
T ss_pred             --------HHHHHHHHCCCeEEEE
Confidence                    8999999999998644

>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue, haloacid dehalogenase superfamily, isomerase, phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A

Probab=99.41  E-value=7.1e-14  Score=123.89  Aligned_cols=93  Identities=12%  Similarity=0.153  Sum_probs=80.0

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|++.|++++|+||..              .+..+++.+++.  |+.+++.+.....||+|.+++.++++
T Consensus        92 ~~~~~~~~l~~l~~~g~~~~i~t~~~--------------~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~  157 (221)
T 2wf7_A           92 VYPGILQLLKDLRSNKIKIALASASK--------------NGPFLLERMNLTGYFDAIADPAEVAASKPAPDIFIAAAHA  157 (221)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEECCCCT--------------THHHHHHHTTCGGGCSEECCTTTSSSCTTSSHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHCCCeEEEEcCcH--------------HHHHHHHHcChHHHcceEeccccCCCCCCChHHHHHHHHH
Confidence            46899999999999999999999940              123456677773  77778888888999999999999998


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      +    ++++++++||||+.                .|+.+|+++|+.++
T Consensus       158 l----gi~~~~~i~iGD~~----------------nDi~~a~~aG~~~~  186 (221)
T 2wf7_A          158 V----GVAPSESIGLEDSQ----------------AGIQAIKDSGALPI  186 (221)
T ss_dssp             T----TCCGGGEEEEESSH----------------HHHHHHHHHTCEEE
T ss_pred             c----CCChhHeEEEeCCH----------------HHHHHHHHCCCEEE
Confidence            6    79999999999999                89999999999985

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=99.41  E-value=1.3e-12  Score=120.79  Aligned_cols=100  Identities=14%  Similarity=0.221  Sum_probs=82.7

Q ss_pred             ccccEEEEEEcCCCCcHHHHHHHHhccCC--cEEEeCCcchh------------------H-----HH-HHHHHHHHHhC
Q psy4598         269 AALDSVLIMIGSQGSGKSSFVSTYLKPLN--YTTVNRDTLGS------------------W-----QK-CVSVMKAALDS  322 (369)
Q Consensus       269 ~~~~~lIll~G~pGSGKSTla~~L~~~~~--~~~i~~D~~~~------------------~-----~~-~~~~~~~~l~~  322 (369)
                      ..+|.+|+|+|+|||||||+++.|++.++  +.+++.|.++.                  +     .. ....+..+++.
T Consensus        29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~~~~~~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  108 (253)
T 2p5t_B           29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQHPHYLELQQEYGKDSVEYTKDFAGKMVESLVTKLSSL  108 (253)
T ss_dssp             CSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTSTTHHHHHTTCSSTTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhchhHHHHHHHcCchHHHHhhHHHHHHHHHHHHHHHhc
Confidence            34568999999999999999999999875  78899998742                  1     11 12344556677


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         323 GLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       323 g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      |.+||+|+++.....+..+..+++++++.+.++++++|.+++.+|.
T Consensus       109 g~~vVid~~~~~~~~~~~~~~~l~~~g~~v~lv~l~~~~e~~~~R~  154 (253)
T 2p5t_B          109 GYNLLIEGTLRTVDVPKKTAQLLKNKGYEVQLALIATKPELSYLST  154 (253)
T ss_dssp             TCCEEEECCTTSSHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHH
T ss_pred             CCCEEEeCCCCCHHHHHHHHHHHHHCCCcEEEEEEeCCHHHHHHHH
Confidence            8899999999888889999999999999999999999999999885

>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii}

Probab=99.41  E-value=1.9e-13  Score=122.05  Aligned_cols=100  Identities=13%  Similarity=0.107  Sum_probs=82.3

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|++.|++++|+||.. .    ..    ...+...++.+|+.  |+.+++.+.....||+|.++..++++
T Consensus       100 ~~~~~~~~l~~l~~~g~~~~i~t~~~-~----~~----~~~~~~~l~~~~l~~~f~~~~~~~~~~~~kp~~~~~~~~~~~  170 (235)
T 2om6_A          100 VLEGTKEALQFVKERGLKTAVIGNVM-F----WP----GSYTRLLLERFGLMEFIDKTFFADEVLSYKPRKEMFEKVLNS  170 (235)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEEECCC-S----SC----HHHHHHHHHHTTCGGGCSEEEEHHHHTCCTTCHHHHHHHHHH
T ss_pred             cCccHHHHHHHHHHCCCEEEEEcCCc-c----cc----hhHHHHHHHhCCcHHHhhhheeccccCCCCCCHHHHHHHHHH
Confidence            37999999999999999999999953 1    11    12345567777874  77777777777899999999999999


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    +++++++++|||+..               .|+.+|+++|+.++.
T Consensus       171 l----gi~~~~~~~iGD~~~---------------nDi~~a~~aG~~~~~  201 (235)
T 2om6_A          171 F----EVKPEESLHIGDTYA---------------EDYQGARKVGMWAVW  201 (235)
T ss_dssp             T----TCCGGGEEEEESCTT---------------TTHHHHHHTTSEEEE
T ss_pred             c----CCCccceEEECCChH---------------HHHHHHHHCCCEEEE
Confidence            6    799999999999972               599999999999854

>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii}

Probab=99.40  E-value=4.6e-13  Score=121.66  Aligned_cols=96  Identities=20%  Similarity=0.280  Sum_probs=82.7

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC-CeEEEEecCCCCCCCCchhHHHHHHHHh
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV-PVQMFVATQYDRYRKPVPGMWEYLSQEK  133 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i-~~~~~~~~~~~~~rKP~~gm~~~~~~~~  133 (369)
                      ++||+.+.|+.|+++|++++|+||++            ...+..+++.+|+ .|+.+++.+....+||+|.+|..+++++
T Consensus       111 ~~~g~~~~l~~l~~~g~~~~i~t~~~------------~~~~~~~l~~~~l~~f~~~~~~~~~~~~Kp~p~~~~~~~~~l  178 (240)
T 2hi0_A          111 PFPGILDLMKNLRQKGVKLAVVSNKP------------NEAVQVLVEELFPGSFDFALGEKSGIRRKPAPDMTSECVKVL  178 (240)
T ss_dssp             ECTTHHHHHHHHHHTTCEEEEEEEEE------------HHHHHHHHHHHSTTTCSEEEEECTTSCCTTSSHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHCCCEEEEEeCCC------------HHHHHHHHHHcCCcceeEEEecCCCCCCCCCHHHHHHHHHHc
Confidence            57999999999999999999999953            1234556677776 5888888888889999999999999996


Q ss_pred             cCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         134 NGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       134 ~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                          ++++++|+||||+.                .|+.+|+++|+.++.
T Consensus       179 ----~~~~~~~~~vGDs~----------------~Di~~a~~aG~~~v~  207 (240)
T 2hi0_A          179 ----GVPRDKCVYIGDSE----------------IDIQTARNSEMDEIA  207 (240)
T ss_dssp             ----TCCGGGEEEEESSH----------------HHHHHHHHTTCEEEE
T ss_pred             ----CCCHHHeEEEcCCH----------------HHHHHHHHCCCeEEE
Confidence                79999999999998                899999999998753

>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A

Probab=99.40  E-value=1e-12  Score=120.08  Aligned_cols=47  Identities=15%  Similarity=0.061  Sum_probs=42.2

Q ss_pred             CCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         118 YRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       118 ~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      .+||+|.+|+.+++++    ++++++++||||+..               +|+.+|+++|++++..
T Consensus       177 ~~Kp~~~~~~~~~~~l----gi~~~~~~~iGD~~~---------------~Di~~a~~aG~~~i~v  223 (259)
T 2ho4_A          177 VGKPEKTFFLEALRDA----DCAPEEAVMIGDDCR---------------DDVDGAQNIGMLGILV  223 (259)
T ss_dssp             CSTTSHHHHHHHGGGG----TCCGGGEEEEESCTT---------------TTHHHHHHTTCEEEEE
T ss_pred             ecCCCHHHHHHHHHHc----CCChHHEEEECCCcH---------------HHHHHHHHCCCcEEEE
Confidence            5899999999999986    799999999999962               7999999999998654

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=99.39  E-value=1.9e-12  Score=120.22  Aligned_cols=96  Identities=23%  Similarity=0.277  Sum_probs=79.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhcc---CCcEEE--eCCcchh------------HH-HHHHHHHHHHhCCCcEEEeCCCC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKP---LNYTTV--NRDTLGS------------WQ-KCVSVMKAALDSGLSVVVDNTNP  333 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~---~~~~~i--~~D~~~~------------~~-~~~~~~~~~l~~g~~vIiD~tn~  333 (369)
                      +.+|+|+|+|||||||+++.|++.   .++.++  +.|.++.            +. .....+..+++. ..||+|+++.
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~~~~~~e~~~~~~~~~~i~~~l~~-~~vIiD~~~~   82 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLIDSALKN-YWVIVDDTNY   82 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSSCCGGGHHHHHHHHHHHHHHHHTT-SEEEECSCCC
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhC-CEEEEeCCcc
Confidence            579999999999999999999987   666665  8887642            11 122344556666 7899999999


Q ss_pred             CHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         334 DKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       334 ~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      ....|..+.++++..+.+..+|++++|.+++.+|+
T Consensus        83 ~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~  117 (260)
T 3a4m_A           83 YNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRN  117 (260)
T ss_dssp             SHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHH
Confidence            99999999999999999999999999999999986

>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}

Probab=99.39  E-value=2e-13  Score=121.43  Aligned_cols=93  Identities=17%  Similarity=0.151  Sum_probs=76.4

Q ss_pred             ccccHHHHHHHHHHCC-cEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDG-YKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQ  131 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G-~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~  131 (369)
                      ++|++.+.|+.|++.| ++++|+||..            ...+..+++.+++  .|+.+++.     .||+|.+++.+++
T Consensus       106 ~~~~~~~~l~~l~~~g~~~~~i~t~~~------------~~~~~~~l~~~~~~~~f~~~~~~-----~kpk~~~~~~~~~  168 (234)
T 3ddh_A          106 LLPGVKETLKTLKETGKYKLVVATKGD------------LLDQENKLERSGLSPYFDHIEVM-----SDKTEKEYLRLLS  168 (234)
T ss_dssp             BCTTHHHHHHHHHHHCCCEEEEEEESC------------HHHHHHHHHHHTCGGGCSEEEEE-----SCCSHHHHHHHHH
T ss_pred             cCccHHHHHHHHHhCCCeEEEEEeCCc------------hHHHHHHHHHhCcHhhhheeeec-----CCCCHHHHHHHHH
Confidence            5899999999999999 9999999943            2234556677776  36655543     5899999999999


Q ss_pred             HhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         132 EKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       132 ~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      ++    ++++++++||||+..               +|+.+|.++|+.++..
T Consensus       169 ~l----gi~~~~~i~iGD~~~---------------~Di~~a~~aG~~~v~v  201 (234)
T 3ddh_A          169 IL----QIAPSELLMVGNSFK---------------SDIQPVLSLGGYGVHI  201 (234)
T ss_dssp             HH----TCCGGGEEEEESCCC---------------CCCHHHHHHTCEEEEC
T ss_pred             Hh----CCCcceEEEECCCcH---------------HHhHHHHHCCCeEEEe
Confidence            96    799999999999942               7999999999998643

>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom cerevisiae, structural genomics, PSI-2, protein structure initiative; 1.60A {Saccharomyces cerevisiae}

Probab=99.38  E-value=1.3e-13  Score=128.24  Aligned_cols=96  Identities=13%  Similarity=0.032  Sum_probs=81.0

Q ss_pred             ccccHHHHHHHHHHC-CcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC-eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDD-GYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP-VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~-G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~-~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|++. |++++|+||..            ...+..+++.+++. |+.+++.+.....||+|.++..++++
T Consensus       115 ~~~g~~~~L~~l~~~~g~~l~i~T~~~------------~~~~~~~l~~~~l~~f~~i~~~~~~~~~kp~~~~~~~~~~~  182 (275)
T 2qlt_A          115 EVPGAVKLCNALNALPKEKWAVATSGT------------RDMAKKWFDILKIKRPEYFITANDVKQGKPHPEPYLKGRNG  182 (275)
T ss_dssp             ECTTHHHHHHHHHTSCGGGEEEECSSC------------HHHHHHHHHHHTCCCCSSEECGGGCSSCTTSSHHHHHHHHH
T ss_pred             cCcCHHHHHHHHHhccCCeEEEEeCCC------------HHHHHHHHHHcCCCccCEEEEcccCCCCCCChHHHHHHHHH
Confidence            479999999999999 99999999953            12345556666763 67777777778899999999999998


Q ss_pred             hcCCccc-------cCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         133 KNGDLAI-------DISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       133 ~~~~~~i-------~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    ++       +++++++|||+.                .|+.+|+++|+.++.
T Consensus       183 l----gi~~~~~~~~~~~~i~~GDs~----------------nDi~~a~~AG~~~i~  219 (275)
T 2qlt_A          183 L----GFPINEQDPSKSKVVVFEDAP----------------AGIAAGKAAGCKIVG  219 (275)
T ss_dssp             T----TCCCCSSCGGGSCEEEEESSH----------------HHHHHHHHTTCEEEE
T ss_pred             c----CCCccccCCCcceEEEEeCCH----------------HHHHHHHHcCCEEEE
Confidence            6    68       999999999999                899999999999854

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=99.38  E-value=5.2e-13  Score=126.01  Aligned_cols=123  Identities=15%  Similarity=0.164  Sum_probs=91.8

Q ss_pred             ceEEEEecCCceeecCCCCCCCCCccccc-----cccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHH
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVDTHDWK-----LLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKI   99 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~-----~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~   99 (369)
                      .+.+.+|.|||+.....     ..+.+|.     .++||+.+.|+.|+++|++++|+||.+.....         .+...
T Consensus       159 ~~~i~iD~dgtl~~~~~-----~~~~~~~~~~~~~~~~g~~e~L~~L~~~g~~~~v~T~k~~~~~~---------~~~~~  224 (301)
T 1ltq_A          159 PKAVIFDVDGTLAKMNG-----RGPYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKE---------DPTKY  224 (301)
T ss_dssp             CEEEEEETBTTTBCCSS-----CCTTCGGGGGGCCBCHHHHHHHHHHHHTTCEEEEEECSCCCCSS---------STTHH
T ss_pred             cceEEEeCCCCcccccC-----CCchhhhhccccCCChHHHHHHHHHHHCCCeEEEEeCCCcccch---------hHHHH
Confidence            46788999999865421     2233442     36899999999999999999999997632211         12233


Q ss_pred             HHH--------cCCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCC-ccEEeeCccccccccCCCCCCCCCcccH
Q psy4598         100 IKS--------LNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDIS-QSFYAGDAAGRAANWAPKKKKDFACTDH  170 (369)
Q Consensus       100 l~~--------l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~-~s~~VGD~~gr~~~~~~~~~~d~s~~D~  170 (369)
                      ++.        +|++|+.+++.+.. .+||+|.++..+++++    ...+. .++||||+.                .|+
T Consensus       225 l~~~~~~~~~~~~~~~~~~~~~~~~-~~kp~p~~~~~~~~~~----~~~~~~~~~~vgD~~----------------~di  283 (301)
T 1ltq_A          225 YRMTRKWVEDIAGVPLVMQCQREQG-DTRKDDVVKEEIFWKH----IAPHFDVKLAIDDRT----------------QVV  283 (301)
T ss_dssp             HHHHHHHHHHTTCCCCSEEEECCTT-CCSCHHHHHHHHHHHH----TTTTCEEEEEEECCH----------------HHH
T ss_pred             HHhcccccccccCCCchheeeccCC-CCcHHHHHHHHHHHHH----hccccceEEEeCCcH----------------HHH
Confidence            445        78888877766554 5799999999999885    34444 479999999                899


Q ss_pred             HHHHhCCCCccC
Q psy4598         171 LFAFNLNLAFFT  182 (369)
Q Consensus       171 ~~A~n~Gi~f~~  182 (369)
                      ++|+++||+++.
T Consensus       284 ~~a~~aG~~~~~  295 (301)
T 1ltq_A          284 EMWRRIGVECWQ  295 (301)
T ss_dssp             HHHHHTTCCEEE
T ss_pred             HHHHHcCCeEEE
Confidence            999999999864

>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A

Probab=99.38  E-value=5.9e-13  Score=117.72  Aligned_cols=117  Identities=24%  Similarity=0.292  Sum_probs=84.0

Q ss_pred             CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHc
Q psy4598          24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSL  103 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l  103 (369)
                      ..|.++||+||||+++..  .+.........+...-...|++|+++|++++|+||.+            ...++.+++.+
T Consensus        18 ~ik~vifD~DGTL~d~~~--~~~~~~~~~~~~~~~~~~~l~~L~~~g~~~~i~T~~~------------~~~~~~~~~~l   83 (189)
T 3mn1_A           18 AIKLAVFDVDGVLTDGRL--YFMEDGSEIKTFNTLDGQGIKMLIASGVTTAIISGRK------------TAIVERRAKSL   83 (189)
T ss_dssp             TCCEEEECSTTTTSCSEE--EEETTSCEEEEEEHHHHHHHHHHHHTTCEEEEECSSC------------CHHHHHHHHHH
T ss_pred             hCCEEEEcCCCCcCCccE--eeccCCcEeeeeccccHHHHHHHHHCCCEEEEEECcC------------hHHHHHHHHHc
Confidence            468999999999997631  1222111111111111238999999999999999954            23456677888


Q ss_pred             CCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         104 NVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       104 ~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      |+. .++ ..     .+|+|.+++.+++++    ++++++++||||+.                .|+.+|.++|+.+.
T Consensus        84 gl~-~~f-~~-----~~~K~~~~~~~~~~~----g~~~~~~~~vGD~~----------------nDi~~~~~ag~~~~  134 (189)
T 3mn1_A           84 GIE-HLF-QG-----REDKLVVLDKLLAEL----QLGYEQVAYLGDDL----------------PDLPVIRRVGLGMA  134 (189)
T ss_dssp             TCS-EEE-CS-----CSCHHHHHHHHHHHH----TCCGGGEEEEECSG----------------GGHHHHHHSSEEEE
T ss_pred             CCH-HHh-cC-----cCChHHHHHHHHHHc----CCChhHEEEECCCH----------------HHHHHHHHCCCeEE
Confidence            874 112 11     277789999999986    78999999999999                89999999999864

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=99.38  E-value=2.2e-12  Score=121.83  Aligned_cols=99  Identities=17%  Similarity=0.280  Sum_probs=82.5

Q ss_pred             ccccEEEEEEcCCCCcHHHHHHHHhccC--CcEEEeCCcchh-----------------------HHH-HHHHHHHHHhC
Q psy4598         269 AALDSVLIMIGSQGSGKSSFVSTYLKPL--NYTTVNRDTLGS-----------------------WQK-CVSVMKAALDS  322 (369)
Q Consensus       269 ~~~~~lIll~G~pGSGKSTla~~L~~~~--~~~~i~~D~~~~-----------------------~~~-~~~~~~~~l~~  322 (369)
                      ..++.+|+|+|+|||||||+++.|++.+  ++.+|+.|.++.                       +.. ....+.++++.
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~~  109 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQ  109 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHhchhhHHHHHHccchhhhhhhHHHHHHHHHHHHHHHhc
Confidence            3457899999999999999999999887  789999998741                       111 12344566778


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHH----HHH
Q psy4598         323 GLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHA----KHN  367 (369)
Q Consensus       323 g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~----~~R  367 (369)
                      |.+||+|.++.....+..+++.+++.|+++.+++|.+|++++    .+|
T Consensus       110 g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~R  158 (287)
T 1gvn_B          110 GYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIER  158 (287)
T ss_dssp             TCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHH
Confidence            999999999998888889999999999999999999999999    666

>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST genomics, PSI-2, protein structure initiative; 1.80A {Chlorobaculum tepidum} SCOP: c.108.1.6

Probab=99.37  E-value=5.8e-13  Score=119.16  Aligned_cols=96  Identities=15%  Similarity=0.058  Sum_probs=77.1

Q ss_pred             ccccHHHHHHHHHHC-CcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCC-CCCCchhHHHHHH
Q psy4598          55 LFSNIESVLKQYLDD-GYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDR-YRKPVPGMWEYLS  130 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~-G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~-~rKP~~gm~~~~~  130 (369)
                      ++|++.+.|+.|++. |++++|+||..            ...+...++.+|+.  |+..++..+.. ..||.+.+++.++
T Consensus        94 ~~~~~~~~l~~l~~~~g~~~~i~t~~~------------~~~~~~~l~~~~l~~~f~~~~~~~~~~~~~k~~~~~~~~~~  161 (234)
T 2hcf_A           94 LLEGVRELLDALSSRSDVLLGLLTGNF------------EASGRHKLKLPGIDHYFPFGAFADDALDRNELPHIALERAR  161 (234)
T ss_dssp             ECTTHHHHHHHHHTCTTEEEEEECSSC------------HHHHHHHHHTTTCSTTCSCEECTTTCSSGGGHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHhCCCceEEEEcCCc------------HHHHHHHHHHCCchhhcCcceecCCCcCccchHHHHHHHHH
Confidence            578999999999999 99999999943            22345567788873  66545544433 4568899999999


Q ss_pred             HHhcCCcc--ccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         131 QEKNGDLA--IDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       131 ~~~~~~~~--i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +++    +  +++++++||||+.                .|+.+|+++|+.++.
T Consensus       162 ~~l----g~~~~~~~~i~iGD~~----------------~Di~~a~~aG~~~i~  195 (234)
T 2hcf_A          162 RMT----GANYSPSQIVIIGDTE----------------HDIRCARELDARSIA  195 (234)
T ss_dssp             HHH----CCCCCGGGEEEEESSH----------------HHHHHHHTTTCEEEE
T ss_pred             HHh----CCCCCcccEEEECCCH----------------HHHHHHHHCCCcEEE
Confidence            986    6  8999999999999                899999999998754

>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}

Probab=99.37  E-value=6.9e-13  Score=119.72  Aligned_cols=115  Identities=13%  Similarity=0.122  Sum_probs=85.4

Q ss_pred             CceEEEEecCCceeecCCCCCCCCCcccccc--ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHH
Q psy4598          24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKL--LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIK  101 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~--~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~  101 (369)
                      ..|.++||+||||+++.  ..+......+..  +.++.  .|+.|+++|++++|+||.+            ...+..+++
T Consensus        48 ~ik~viFDlDGTL~Ds~--~~~~~~~~~~~~~~~~d~~--~L~~L~~~G~~l~I~T~~~------------~~~~~~~l~  111 (211)
T 3ij5_A           48 NIRLLICDVDGVMSDGL--IYMGNQGEELKAFNVRDGY--GIRCLITSDIDVAIITGRR------------AKLLEDRAN  111 (211)
T ss_dssp             TCSEEEECCTTTTSSSE--EEEETTSCEEEEEEHHHHH--HHHHHHHTTCEEEEECSSC------------CHHHHHHHH
T ss_pred             CCCEEEEeCCCCEECCH--HHHhhhhHHHHHhccchHH--HHHHHHHCCCEEEEEeCCC------------HHHHHHHHH
Confidence            45899999999999763  122222222221  12233  8999999999999999953            234566788


Q ss_pred             HcCCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         102 SLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       102 ~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      .+|+.-  ++.     ..||+|.+++.+++++    ++++++++||||+.                .|+.+|+++|+.+.
T Consensus       112 ~lgi~~--~f~-----~~k~K~~~l~~~~~~l----g~~~~~~~~vGDs~----------------nDi~~~~~ag~~~a  164 (211)
T 3ij5_A          112 TLGITH--LYQ-----GQSDKLVAYHELLATL----QCQPEQVAYIGDDL----------------IDWPVMAQVGLSVA  164 (211)
T ss_dssp             HHTCCE--EEC-----SCSSHHHHHHHHHHHH----TCCGGGEEEEECSG----------------GGHHHHTTSSEEEE
T ss_pred             HcCCch--hhc-----ccCChHHHHHHHHHHc----CcCcceEEEEcCCH----------------HHHHHHHHCCCEEE
Confidence            888741  221     1299999999999986    79999999999999                89999999999875

>1swv_A Phosphonoacetaldehyde hydrolase; HAD enzyme superfamily, phosphonotase, metal binding; 2.30A {Bacillus cereus} SCOP: c.108.1.3 PDB: 1sww_A 2iof_A* 2ioh_A 1rql_A 1rqn_A 2iof_K* 1rdf_A 1fez_A

Probab=99.36  E-value=8.7e-13  Score=121.08  Aligned_cols=96  Identities=15%  Similarity=0.106  Sum_probs=76.8

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--C-eEEEEecCCCCCCCCchhHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--P-VQMFVATQYDRYRKPVPGMWEYLSQ  131 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~-~~~~~~~~~~~~rKP~~gm~~~~~~  131 (369)
                      ++|++.+.|+.|++.|++++|+||.+        ..    .+..+++.+|+  . ++.+++.+....+||+|.++..+++
T Consensus       104 ~~~~~~~~l~~l~~~g~~~~i~t~~~--------~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~kp~~~~~~~~~~  171 (267)
T 1swv_A          104 PINGVKEVIASLRERGIKIGSTTGYT--------RE----MMDIVAKEAALQGYKPDFLVTPDDVPAGRPYPWMCYKNAM  171 (267)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEBCSSC--------HH----HHHHHHHHHHHTTCCCSCCBCGGGSSCCTTSSHHHHHHHH
T ss_pred             cCccHHHHHHHHHHcCCeEEEEcCCC--------HH----HHHHHHHHcCCcccChHheecCCccCCCCCCHHHHHHHHH
Confidence            47899999999999999999999953        11    22333444332  2 3666677777789999999999999


Q ss_pred             HhcCCccccC-CccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         132 EKNGDLAIDI-SQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       132 ~~~~~~~i~~-~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      ++    ++++ ++++||||+.                .|+.+|+++|+.++.
T Consensus       172 ~l----gi~~~~~~i~iGD~~----------------nDi~~a~~aG~~~i~  203 (267)
T 1swv_A          172 EL----GVYPMNHMIKVGDTV----------------SDMKEGRNAGMWTVG  203 (267)
T ss_dssp             HH----TCCSGGGEEEEESSH----------------HHHHHHHHTTSEEEE
T ss_pred             Hh----CCCCCcCEEEEeCCH----------------HHHHHHHHCCCEEEE
Confidence            86    7888 9999999999                899999999998754

>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A*

Probab=99.35  E-value=3.6e-12  Score=117.69  Aligned_cols=50  Identities=24%  Similarity=0.442  Sum_probs=42.9

Q ss_pred             CCCCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcC
Q psy4598          21 VCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIG   83 (369)
Q Consensus        21 ~~~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~   83 (369)
                      +..+.+.++||+||||+.+.             .+.|++.++|++|+++|++++++||++|..
T Consensus        13 ~~~~~~~v~~DlDGTLl~~~-------------~~~~~~~~~l~~l~~~G~~~~~aTn~~gr~   62 (271)
T 1vjr_A           13 VLDKIELFILDMDGTFYLDD-------------SLLPGSLEFLETLKEKNKRFVFFTNNSSLG   62 (271)
T ss_dssp             GGGGCCEEEECCBTTTEETT-------------EECTTHHHHHHHHHHTTCEEEEEESCTTSC
T ss_pred             cccCCCEEEEcCcCcEEeCC-------------EECcCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence            44667999999999999752             267999999999999999999999998754

>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl, hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB: 1l8l_A* 1l8o_A

Probab=99.35  E-value=9.8e-13  Score=117.90  Aligned_cols=93  Identities=14%  Similarity=0.167  Sum_probs=71.6

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC----eEEE---------EecCCCC---C
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP----VQMF---------VATQYDR---Y  118 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~----~~~~---------~~~~~~~---~  118 (369)
                      ++||+.+.|+.|+++|++++|+||++            ...++.+++.+|+.    |+..         .+.+...   .
T Consensus        87 ~~~g~~~~l~~L~~~g~~~~i~T~~~------------~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~~~~~~~~~~~~  154 (225)
T 1nnl_A           87 LTPGIRELVSRLQERNVQVFLISGGF------------RSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPTAE  154 (225)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEEEEEE------------HHHHHHHHHHTTCCGGGEEEECEEECTTSCEEEECTTSGGGS
T ss_pred             CCccHHHHHHHHHHCCCcEEEEeCCh------------HHHHHHHHHHcCCCcccEEeeeEEEcCCCcEecCCCCCcccC
Confidence            68999999999999999999999953            23456778888884    3322         2322211   1


Q ss_pred             CCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         119 RKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       119 rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      .||+|.+++.+++++    ++  ++++||||+.                .|+.+|+++|+ ++.
T Consensus       155 ~~~Kp~~~~~~~~~~----~~--~~~~~vGDs~----------------~Di~~a~~ag~-~i~  195 (225)
T 1nnl_A          155 SGGKGKVIKLLKEKF----HF--KKIIMIGDGA----------------TDMEACPPADA-FIG  195 (225)
T ss_dssp             TTHHHHHHHHHHHHH----CC--SCEEEEESSH----------------HHHTTTTTSSE-EEE
T ss_pred             CCchHHHHHHHHHHc----CC--CcEEEEeCcH----------------HhHHHHHhCCe-EEE
Confidence            467888999999886    44  7899999999                89999999999 643

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=99.35  E-value=5.8e-13  Score=131.78  Aligned_cols=95  Identities=16%  Similarity=0.152  Sum_probs=77.7

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEE-------Ee---cCCCCCCCCc
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMF-------VA---TQYDRYRKPV  122 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~-------~~---~~~~~~rKP~  122 (369)
                      ++||+.+.|+.|+++||+++|+||.            +...+..+++.+|+.  |...       ++   .+....+||+
T Consensus       257 ~~pg~~e~l~~Lk~~G~~~~ivS~~------------~~~~~~~~~~~lgl~~~~~~~l~~~dg~~tg~~~~~v~~~kpk  324 (415)
T 3p96_A          257 LMPGARTTLRTLRRLGYACGVVSGG------------FRRIIEPLAEELMLDYVAANELEIVDGTLTGRVVGPIIDRAGK  324 (415)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEEEEE------------EHHHHHHHHHHTTCSEEEEECEEEETTEEEEEECSSCCCHHHH
T ss_pred             cCccHHHHHHHHHHCCCEEEEEcCC------------cHHHHHHHHHHcCccceeeeeEEEeCCEEEeeEccCCCCCcch
Confidence            6899999999999999999999993            234566778889985  2211       11   1244568999


Q ss_pred             hhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         123 PGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       123 ~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      |.++..+++++    ++++++++||||+.                +|+.+|.++|+.+.
T Consensus       325 ~~~~~~~~~~~----gi~~~~~i~vGD~~----------------~Di~~a~~aG~~va  363 (415)
T 3p96_A          325 ATALREFAQRA----GVPMAQTVAVGDGA----------------NDIDMLAAAGLGIA  363 (415)
T ss_dssp             HHHHHHHHHHH----TCCGGGEEEEECSG----------------GGHHHHHHSSEEEE
T ss_pred             HHHHHHHHHHc----CcChhhEEEEECCH----------------HHHHHHHHCCCeEE
Confidence            99999999986    78999999999999                89999999999874

>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A

Probab=99.34  E-value=1.8e-12  Score=120.32  Aligned_cols=95  Identities=9%  Similarity=0.182  Sum_probs=79.1

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHc---CC--CeEEEEecCCCCCCCCchhHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSL---NV--PVQMFVATQYDRYRKPVPGMWEYL  129 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l---~i--~~~~~~~~~~~~~rKP~~gm~~~~  129 (369)
                      ++|++.+.|+.|+++|++++|+||.+.            .....+++.+   |+  .|+.+++. +.. +||+|.+|+.+
T Consensus       131 ~~~g~~~~L~~L~~~g~~~~i~Tn~~~------------~~~~~~l~~~~~~~l~~~fd~i~~~-~~~-~KP~p~~~~~~  196 (261)
T 1yns_A          131 FFADVVPAVRKWREAGMKVYIYSSGSV------------EAQKLLFGHSTEGDILELVDGHFDT-KIG-HKVESESYRKI  196 (261)
T ss_dssp             CCTTHHHHHHHHHHTTCEEEEECSSCH------------HHHHHHHHTBTTBCCGGGCSEEECG-GGC-CTTCHHHHHHH
T ss_pred             cCcCHHHHHHHHHhCCCeEEEEeCCCH------------HHHHHHHHhhcccChHhhccEEEec-CCC-CCCCHHHHHHH
Confidence            689999999999999999999999541            1234445543   45  47877777 667 99999999999


Q ss_pred             HHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         130 SQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       130 ~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      ++++    +++|++|+||||+.                .|+.+|+++|++++..
T Consensus       197 ~~~l----g~~p~~~l~VgDs~----------------~di~aA~~aG~~~i~v  230 (261)
T 1yns_A          197 ADSI----GCSTNNILFLTDVT----------------REASAAEEADVHVAVV  230 (261)
T ss_dssp             HHHH----TSCGGGEEEEESCH----------------HHHHHHHHTTCEEEEE
T ss_pred             HHHh----CcCcccEEEEcCCH----------------HHHHHHHHCCCEEEEE
Confidence            9996    78999999999997                8999999999998643

>1rku_A Homoserine kinase; phosphoserine phosphatase, phosphoserine:homoserine phosphotransferase, THRH, phosphoserine phosphoryl donor; 1.47A {Pseudomonas aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A

Probab=99.34  E-value=1.2e-12  Score=115.76  Aligned_cols=94  Identities=11%  Similarity=0.090  Sum_probs=76.0

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--e-EEEEecCCCCC--C-CCchhHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--V-QMFVATQYDRY--R-KPVPGMWEY  128 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~-~~~~~~~~~~~--r-KP~~gm~~~  128 (369)
                      ++|++.+.|+.|+++ ++++|+||.+            ...+..+++.+|+.  | +.+++..+..+  + ||+|.++..
T Consensus        70 ~~~g~~~~l~~l~~~-~~~~i~s~~~------------~~~~~~~l~~~gl~~~f~~~~~~~~~~~~~~~~~p~p~~~~~  136 (206)
T 1rku_A           70 PLEGAVEFVDWLRER-FQVVILSDTF------------YEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQ  136 (206)
T ss_dssp             CCTTHHHHHHHHHTT-SEEEEEEEEE------------HHHHHHHHHHTTCCCEEEEEEEECTTSCEEEEECCSSSHHHH
T ss_pred             CCccHHHHHHHHHhc-CcEEEEECCh------------HHHHHHHHHHcCCcceecceeEEcCCceEEeeecCCCchHHH
Confidence            589999999999999 9999999943            23456778888885  5 34555444322  2 599999999


Q ss_pred             HHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         129 LSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       129 ~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      +++++    ++++++++||||+.                +|+.+|+++|+.+.
T Consensus       137 ~l~~l----~~~~~~~~~iGD~~----------------~Di~~a~~aG~~~~  169 (206)
T 1rku_A          137 SVIAF----KSLYYRVIAAGDSY----------------NDTTMLSEAHAGIL  169 (206)
T ss_dssp             HHHHH----HHTTCEEEEEECSS----------------TTHHHHHHSSEEEE
T ss_pred             HHHHH----HhcCCEEEEEeCCh----------------hhHHHHHhcCccEE
Confidence            99986    67899999999998                89999999999864

>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}

Probab=99.34  E-value=6e-13  Score=119.74  Aligned_cols=97  Identities=13%  Similarity=0.098  Sum_probs=76.1

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eE-EEEec---------CCCCCCCCc
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQ-MFVAT---------QYDRYRKPV  122 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~-~~~~~---------~~~~~rKP~  122 (369)
                      ++||+.+.|+.|+++|++++|+||..            ...++.+++.+|+.  +. .+...         ....+.+|+
T Consensus        93 ~~~g~~~~l~~l~~~g~~~~ivS~~~------------~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~K  160 (232)
T 3fvv_A           93 LTVQAVDVVRGHLAAGDLCALVTATN------------SFVTAPIARAFGVQHLIATDPEYRDGRYTGRIEGTPSFREGK  160 (232)
T ss_dssp             CCHHHHHHHHHHHHTTCEEEEEESSC------------HHHHHHHHHHTTCCEEEECEEEEETTEEEEEEESSCSSTHHH
T ss_pred             cCHHHHHHHHHHHHCCCEEEEEeCCC------------HHHHHHHHHHcCCCEEEEcceEEECCEEeeeecCCCCcchHH
Confidence            58999999999999999999999932            34566778888985  21 11110         133456788


Q ss_pred             hhHHHHHHHHhcCCcc---ccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc-cCc
Q psy4598         123 PGMWEYLSQEKNGDLA---IDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF-FTP  183 (369)
Q Consensus       123 ~gm~~~~~~~~~~~~~---i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f-~~p  183 (369)
                      +..++.+++++    +   +++++|+||||+.                +|+.+|.++|+.+ +.|
T Consensus       161 ~~~~~~~~~~~----~~~~~~~~~~~~vGDs~----------------~D~~~~~~ag~~~~~~~  205 (232)
T 3fvv_A          161 VVRVNQWLAGM----GLALGDFAESYFYSDSV----------------NDVPLLEAVTRPIAANP  205 (232)
T ss_dssp             HHHHHHHHHHT----TCCGGGSSEEEEEECCG----------------GGHHHHHHSSEEEEESC
T ss_pred             HHHHHHHHHHc----CCCcCchhheEEEeCCH----------------hhHHHHHhCCCeEEECc
Confidence            88899999875    7   8999999999999                8999999999998 344

>2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4 protein), struct genomics, PSI, protein structure initiative; 2.28A {Saccharomyces cerevisiae} SCOP: c.108.1.22

Probab=99.34  E-value=1.4e-12  Score=120.90  Aligned_cols=91  Identities=8%  Similarity=0.143  Sum_probs=68.6

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHc--C---------C--CeEEEEecCCCCCCCC
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSL--N---------V--PVQMFVATQYDRYRKP  121 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l--~---------i--~~~~~~~~~~~~~rKP  121 (369)
                      ++||+.+.|++    |++++|+||.+            ...+..+++.+  |         +  .|+.++... ....||
T Consensus       126 ~~pgv~e~L~~----g~~l~i~Tn~~------------~~~~~~~l~~~~~g~~~~~~~l~l~~~~~~~f~~~-~~g~KP  188 (253)
T 2g80_A          126 VYADAIDFIKR----KKRVFIYSSGS------------VKAQKLLFGYVQDPNAPAHDSLDLNSYIDGYFDIN-TSGKKT  188 (253)
T ss_dssp             CCHHHHHHHHH----CSCEEEECSSC------------HHHHHHHHHSBCCTTCTTSCCBCCGGGCCEEECHH-HHCCTT
T ss_pred             CCCCHHHHHHc----CCEEEEEeCCC------------HHHHHHHHHhhcccccccccccchHhhcceEEeee-ccCCCC
Confidence            46888888887    99999999953            12334455554  3         3  144444332 102599


Q ss_pred             chhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         122 VPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       122 ~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +|.+|..+++++    +++|++|+||||+.                .|+++|+++||+++.
T Consensus       189 ~p~~~~~a~~~l----g~~p~~~l~vgDs~----------------~di~aA~~aG~~~i~  229 (253)
T 2g80_A          189 ETQSYANILRDI----GAKASEVLFLSDNP----------------LELDAAAGVGIATGL  229 (253)
T ss_dssp             CHHHHHHHHHHH----TCCGGGEEEEESCH----------------HHHHHHHTTTCEEEE
T ss_pred             CHHHHHHHHHHc----CCCcccEEEEcCCH----------------HHHHHHHHcCCEEEE
Confidence            999999999996    79999999999999                899999999999864

>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A

Probab=99.34  E-value=4e-12  Score=117.52  Aligned_cols=47  Identities=19%  Similarity=0.128  Sum_probs=42.6

Q ss_pred             CCCCCchhHHHHHHHHhcCCccccCCccEEeeCc-cccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         117 RYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDA-AGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       117 ~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~-~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      ..+||+|.+++.+++++    ++++++++||||+ .                +|+.+|+++|++++..
T Consensus       179 ~~~Kp~~~~~~~~~~~~----~~~~~~~~~vGD~~~----------------~Di~~a~~aG~~~~~v  226 (264)
T 3epr_A          179 FIGKPNAIIMNKALEIL----NIPRNQAVMVGDNYL----------------TDIMAGINNDIDTLLV  226 (264)
T ss_dssp             ECSTTSHHHHHHHHHHH----TSCGGGEEEEESCTT----------------THHHHHHHHTCEEEEE
T ss_pred             cCCCCCHHHHHHHHHHh----CcCcccEEEECCCcH----------------HHHHHHHHCCCeEEEE
Confidence            45899999999999996    7999999999999 6                8999999999998654

>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*

Probab=99.32  E-value=8.5e-12  Score=118.03  Aligned_cols=48  Identities=19%  Similarity=0.243  Sum_probs=41.7

Q ss_pred             CCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcC
Q psy4598          23 NSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIG   83 (369)
Q Consensus        23 ~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~   83 (369)
                      .+.|+++||+||||+...             .++|++.++|++|+++|++++++||++|..
T Consensus        19 ~~~k~i~~D~DGTL~~~~-------------~~~~~~~~~l~~l~~~g~~~~~~Tn~~~~~   66 (306)
T 2oyc_A           19 GRAQGVLFDCDGVLWNGE-------------RAVPGAPELLERLARAGKAALFVSNNSRRA   66 (306)
T ss_dssp             HHCSEEEECSBTTTEETT-------------EECTTHHHHHHHHHHTTCEEEEEECCCSSC
T ss_pred             hhCCEEEECCCCcEecCC-------------ccCcCHHHHHHHHHHCCCeEEEEECCCCCC
Confidence            356899999999999642             268999999999999999999999998765

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=99.32  E-value=4.6e-12  Score=112.63  Aligned_cols=95  Identities=21%  Similarity=0.248  Sum_probs=76.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh-----------------HHHHHHHHHHHHhCCCcEEEeCCCC
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS-----------------WQKCVSVMKAALDSGLSVVVDNTNP  333 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~-----------------~~~~~~~~~~~l~~g~~vIiD~tn~  333 (369)
                      ++.+|+|+|+|||||||+++.|++.+++.+++.|.+..                 .......+...+..|..||+|.++.
T Consensus        17 ~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~vivd~~~~   96 (202)
T 3t61_A           17 FPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIPLTDDDRWPWLAAIGERLASREPVVVSCSAL   96 (202)
T ss_dssp             CSSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTSSSCCEEECCCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcCCCCCchhhHHHHHHHHHHHhcCCCEEEECCCC
Confidence            45789999999999999999999999999999998731                 1122344555567888999999998


Q ss_pred             CHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         334 DKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       334 ~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      ....+..+..++   +.++.+|++++|.+++.+|.
T Consensus        97 ~~~~~~~l~~~~---~~~~~vi~l~~~~e~~~~Rl  128 (202)
T 3t61_A           97 KRSYRDKLRESA---PGGLAFVFLHGSESVLAERM  128 (202)
T ss_dssp             SHHHHHHHHHTS---TTCCEEEEEECCHHHHHHHH
T ss_pred             CHHHHHHHHHhc---CCCeEEEEEeCCHHHHHHHH
Confidence            888877775543   55678999999999999884

>3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S genomics, national institute of allergy and infectious DISE (niaid); 1.70A {Francisella tularensis subsp}

Probab=99.31  E-value=2.5e-12  Score=113.31  Aligned_cols=95  Identities=14%  Similarity=0.104  Sum_probs=71.5

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC----eE--EEEecCC----CCCCCCchh
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP----VQ--MFVATQY----DRYRKPVPG  124 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~----~~--~~~~~~~----~~~rKP~~g  124 (369)
                      ++|++.+.|+.|+++|++++|+||..            ...+..+++.+|++    |.  +.++.+.    ....||+++
T Consensus        83 ~~~~~~~~l~~l~~~g~~~~i~s~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (219)
T 3kd3_A           83 LTDGIKELVQDLKNKGFEIWIFSGGL------------SESIQPFADYLNIPRENIFAVETIWNSDGSFKELDNSNGACD  150 (219)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEEEEEE------------HHHHHHHHHHHTCCGGGEEEEEEEECTTSBEEEEECTTSTTT
T ss_pred             CChhHHHHHHHHHHCCCeEEEEcCCc------------HHHHHHHHHHcCCCcccEEEeeeeecCCCceeccCCCCCCcc
Confidence            68999999999999999999999942            23455667888874    22  2222222    246899888


Q ss_pred             HHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         125 MWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       125 m~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      ....++.+.   +++++++++||||+.                +|+.+| ++|+.++
T Consensus       151 ~~~~~l~~~---~~~~~~~~~~vGD~~----------------~Di~~~-~~G~~~~  187 (219)
T 3kd3_A          151 SKLSAFDKA---KGLIDGEVIAIGDGY----------------TDYQLY-EKGYATK  187 (219)
T ss_dssp             CHHHHHHHH---GGGCCSEEEEEESSH----------------HHHHHH-HHTSCSE
T ss_pred             cHHHHHHHH---hCCCCCCEEEEECCH----------------hHHHHH-hCCCCcE
Confidence            777666554   378999999999999                899998 6898853

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=99.31  E-value=1e-11  Score=107.71  Aligned_cols=96  Identities=16%  Similarity=0.201  Sum_probs=71.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCc--EEEeCCcch--------------------------hHHH----HHHHHHH
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNY--TTVNRDTLG--------------------------SWQK----CVSVMKA  318 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~--~~i~~D~~~--------------------------~~~~----~~~~~~~  318 (369)
                      |+.+|+|+|+|||||||+++.|++.++.  ..++.|.+.                          .++.    +...+..
T Consensus         2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (178)
T 1qhx_A            2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVA   81 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcchhhccchhhccccCCCccccchhHHHHHHHHHHHHHH
Confidence            3578999999999999999999998754  445566431                          1122    2333566


Q ss_pred             HHhCCCcEEEeCCCC-CHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         319 ALDSGLSVVVDNTNP-DKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       319 ~l~~g~~vIiD~tn~-~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      .++.|.+||+|.++. ....+..+++.++  +..+.+|++++|.+++.+|.
T Consensus        82 ~~~~g~~vi~~~~~~~~~~~~~~~~~~~~--~~~~~~v~l~~~~e~l~~R~  130 (178)
T 1qhx_A           82 MARAGARIIIDDVFLGGAAAQERWRSFVG--DLDVLWVGVRCDGAVAEGRE  130 (178)
T ss_dssp             HHHTTCEEEEEECCTTTHHHHHHHHHHHT--TCCEEEEEEECCHHHHHHHH
T ss_pred             HHhcCCeEEEEeccccChHHHHHHHHHhc--CCcEEEEEEECCHHHHHHHH
Confidence            677888999999886 4555777777664  45678899999999999985

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=99.30  E-value=7.5e-12  Score=108.95  Aligned_cols=98  Identities=14%  Similarity=0.219  Sum_probs=72.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEE-eCCcc----h--------------hH-HHHHHHHHHHHhC-CCcEEEe
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTV-NRDTL----G--------------SW-QKCVSVMKAALDS-GLSVVVD  329 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i-~~D~~----~--------------~~-~~~~~~~~~~l~~-g~~vIiD  329 (369)
                      .+.+|+|+|+|||||||+++.|++.++..++ +.|.+    +              .+ +.+.+.+...++. |..||+|
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~i~~~l~~~g~~vi~d   83 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMGQALRKLTPGFSGDPQEHPMWIPLMLDALQYASREAAGPLIVP   83 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHSTTCEECCTHHHHHHHHHTSTTCCSCGGGSTTHHHHHHHHHHHHHHHCSSCEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEchhhhHHHHHHhCccccchhhhhHHHHHHHHHHHHHHHHhCCCcEEEe
Confidence            4579999999999999999999999887777 42111    1              11 2234445555665 7789999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         330 NTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       330 ~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      .++...+.+..+++.+++.+..+..|++++|.+++.+|.
T Consensus        84 ~~~~~~~~~~~~~~~l~~~~~~~~~i~l~~~~e~~~~R~  122 (183)
T 2vli_A           84 VSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERL  122 (183)
T ss_dssp             ECCCCHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHH
T ss_pred             eeccCHHHHHHHHHHHHhcCCceEEEEEeCCHHHHHHHH
Confidence            999888888888888888887778899999999999884

>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV}

Probab=99.29  E-value=5.4e-12  Score=114.94  Aligned_cols=92  Identities=10%  Similarity=0.097  Sum_probs=74.2

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|+ .|++++|+||..            ...+...++.+|+  .|+.+++     ..||+|.++..++++
T Consensus       113 ~~~~~~~~l~~l~-~~~~~~i~t~~~------------~~~~~~~l~~~~l~~~f~~i~~-----~~kp~~~~~~~~~~~  174 (251)
T 2pke_A          113 VIAGVREAVAAIA-ADYAVVLITKGD------------LFHQEQKIEQSGLSDLFPRIEV-----VSEKDPQTYARVLSE  174 (251)
T ss_dssp             BCTTHHHHHHHHH-TTSEEEEEEESC------------HHHHHHHHHHHSGGGTCCCEEE-----ESCCSHHHHHHHHHH
T ss_pred             cCccHHHHHHHHH-CCCEEEEEeCCC------------HHHHHHHHHHcCcHHhCceeee-----eCCCCHHHHHHHHHH
Confidence            5799999999999 999999999943            1233455666666  3665554     269999999999998


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      +    ++++++++||||+..               .|+.+|+++|+.++..
T Consensus       175 l----~~~~~~~i~iGD~~~---------------~Di~~a~~aG~~~~~v  206 (251)
T 2pke_A          175 F----DLPAERFVMIGNSLR---------------SDVEPVLAIGGWGIYT  206 (251)
T ss_dssp             H----TCCGGGEEEEESCCC---------------CCCHHHHHTTCEEEEC
T ss_pred             h----CcCchhEEEECCCch---------------hhHHHHHHCCCEEEEE
Confidence            6    799999999999972               6999999999998643

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=99.27  E-value=3e-11  Score=105.90  Aligned_cols=98  Identities=16%  Similarity=0.253  Sum_probs=76.9

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCC-----cEEEeCCcchh----------------HHHHHHHHHHHHhCCCcEEEe
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLN-----YTTVNRDTLGS----------------WQKCVSVMKAALDSGLSVVVD  329 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~-----~~~i~~D~~~~----------------~~~~~~~~~~~l~~g~~vIiD  329 (369)
                      .+.+|+|+|+|||||||+++.|++.++     +.+++.|.++.                +..+...+...+..|..||+|
T Consensus        12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~g~~vi~d   91 (186)
T 2yvu_A           12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSEGAGFTREERLRHLKRIAWIARLLARNGVIVICS   91 (186)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHHHHTTTCEEEEE
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhhccCCChhhHHHHHHHHHHHHHHHHhCCCEEEEe
Confidence            457999999999999999999998753     56788776531                111222333445678888899


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         330 NTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       330 ~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      .++.....|..+.+++...+.+..+||+++|.+++.+|.
T Consensus        92 ~~~~~~~~r~~~~~~~~~~~~~~~~v~L~~~~e~~~~R~  130 (186)
T 2yvu_A           92 FVSPYKQARNMVRRIVEEEGIPFLEIYVKASLEEVIRRD  130 (186)
T ss_dssp             CCCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHC
T ss_pred             CccccHHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHhh
Confidence            998888888888888888888899999999999999884

>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}

Probab=99.26  E-value=9.8e-12  Score=108.20  Aligned_cols=115  Identities=12%  Similarity=0.120  Sum_probs=84.2

Q ss_pred             CCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHH-
Q psy4598          23 NSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIK-  101 (369)
Q Consensus        23 ~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~-  101 (369)
                      ...|.++||+||||....  ..+......+..+.-.=...|+.|+++|++++|+||. .             .+..+++ 
T Consensus         7 ~~ikliv~D~DGtL~d~~--~~~~~~g~~~~~f~~~D~~~L~~Lk~~Gi~~~I~Tg~-~-------------~~~~~l~~   70 (168)
T 3ewi_A            7 KEIKLLVCNIDGCLTNGH--IYVSGDQKEIISYDVKDAIGISLLKKSGIEVRLISER-A-------------CSKQTLSA   70 (168)
T ss_dssp             CCCCEEEEECCCCCSCSC--CBCCSSCCCEEEEEHHHHHHHHHHHHTTCEEEEECSS-C-------------CCHHHHHT
T ss_pred             hcCcEEEEeCccceECCc--EEEcCCCCEEEEEecCcHHHHHHHHHCCCEEEEEeCc-H-------------HHHHHHHH
Confidence            457899999999998643  2333333333332211224799999999999999994 1             1244567 


Q ss_pred             -HcCCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc
Q psy4598         102 -SLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF  180 (369)
Q Consensus       102 -~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f  180 (369)
                       .+++.  ++.+      .+|++.++..+++++    ++++++++||||+.                .|+.++.++|+.+
T Consensus        71 l~lgi~--~~~g------~~~K~~~l~~~~~~~----gi~~~~~~~vGD~~----------------nDi~~~~~ag~~~  122 (168)
T 3ewi_A           71 LKLDCK--TEVS------VSDKLATVDEWRKEM----GLCWKEVAYLGNEV----------------SDEECLKRVGLSA  122 (168)
T ss_dssp             TCCCCC--EECS------CSCHHHHHHHHHHHT----TCCGGGEEEECCSG----------------GGHHHHHHSSEEE
T ss_pred             hCCCcE--EEEC------CCChHHHHHHHHHHc----CcChHHEEEEeCCH----------------hHHHHHHHCCCEE
Confidence             55654  3322      368899999999986    79999999999999                8999999999997


Q ss_pred             c
Q psy4598         181 F  181 (369)
Q Consensus       181 ~  181 (369)
                      .
T Consensus       123 a  123 (168)
T 3ewi_A          123 V  123 (168)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=99.26  E-value=1.7e-11  Score=124.89  Aligned_cols=98  Identities=21%  Similarity=0.332  Sum_probs=75.0

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchh-------------------H---HHH----HHHHHH
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGS-------------------W---QKC----VSVMKA  318 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~-------------------~---~~~----~~~~~~  318 (369)
                      .++.+|+|+|+|||||||+|++|++.+     +..+++.|+++.                   +   +.+    ...+..
T Consensus        33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~~  112 (520)
T 2axn_A           33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVKS  112 (520)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHHH
Confidence            456899999999999999999999875     455677776531                   1   111    122223


Q ss_pred             HH--hCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCH-HHHHHH
Q psy4598         319 AL--DSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISK-EHAKHN  367 (369)
Q Consensus       319 ~l--~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~-e~~~~R  367 (369)
                      .+  +.|..||+|+||.....|..++++++++++.+.++++.|+. +++.+|
T Consensus       113 ~L~~~~g~~VIvDat~~~~~~R~~~~~~a~~~g~~v~~l~~~~~d~e~i~~r  164 (520)
T 2axn_A          113 YLAKEGGQIAVFDATNTTRERRHMILHFAKENDFKAFFIESVCDDPTVVASN  164 (520)
T ss_dssp             HHHHSCCCEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEEECCCHHHHHHH
T ss_pred             HHHhcCCceEEecCCCCCHHHHHHHHHHHHHcCCeEEEEEEeCChHHHHHHH
Confidence            33  56889999999999999999999999999999999999984 444443

>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0

Probab=99.25  E-value=4e-11  Score=110.58  Aligned_cols=48  Identities=13%  Similarity=-0.007  Sum_probs=42.8

Q ss_pred             CCCCCCchhHHHHHHHHhcCCccccCCccEEeeCc-cccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         116 DRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDA-AGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       116 ~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~-~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      ...+||+|.+++.+++++    ++++++++||||+ .                +|+.+|+++|++++..
T Consensus       183 ~~~~kp~~~~~~~~~~~~----~~~~~~~~~vGD~~~----------------~Di~~~~~~g~~~~~v  231 (268)
T 3qgm_A          183 VVVGKPSEVIMREALDIL----GLDAKDVAVVGDQID----------------VDVAAGKAIGAETVLV  231 (268)
T ss_dssp             EECSTTSHHHHHHHHHHH----TCCGGGEEEEESCTT----------------THHHHHHHHTCEEEEE
T ss_pred             eecCCCCHHHHHHHHHHh----CCCchhEEEECCCch----------------HHHHHHHHCCCcEEEE
Confidence            346999999999999996    7999999999999 5                8999999999988644

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=99.25  E-value=4.7e-11  Score=104.36  Aligned_cols=102  Identities=19%  Similarity=0.324  Sum_probs=75.0

Q ss_pred             ccccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchhH------------------------HHHHHHHHHHHh-
Q psy4598         267 MKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSW------------------------QKCVSVMKAALD-  321 (369)
Q Consensus       267 ~~~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~~------------------------~~~~~~~~~~l~-  321 (369)
                      |...|+.+|+|+|+|||||||+++.|++.+++.+++.|.+...                        ......+.+.+. 
T Consensus         1 m~~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~   80 (194)
T 1qf9_A            1 MEKSKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDA   80 (194)
T ss_dssp             CCCCCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred             CCCCcCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHh
Confidence            3456788999999999999999999999999999999775210                        011222233332 


Q ss_pred             -CCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         322 -SGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       322 -~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                       .+..||+|+.......+..+...+.....+-.+|++++|.+++.+|.
T Consensus        81 ~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~  128 (194)
T 1qf9_A           81 NQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRL  128 (194)
T ss_dssp             STTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHH
T ss_pred             cCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHH
Confidence             46789999988887777777666554323446899999999999884

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=99.24  E-value=5.7e-11  Score=102.86  Aligned_cols=93  Identities=15%  Similarity=0.154  Sum_probs=71.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh---------------------HHHHHHHHHHHHhCCCcEEEeC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS---------------------WQKCVSVMKAALDSGLSVVVDN  330 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~---------------------~~~~~~~~~~~l~~g~~vIiD~  330 (369)
                      ..+|+|+|+|||||||+++.|+..++..+++.|.+..                     +..+...+...+..+..+|+|.
T Consensus         8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~   87 (175)
T 1knq_A            8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLIVC   87 (175)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHCSEEEEEC
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccchHHHHHhhcCcCCCccccccHHHHHHHHHHHHHhcCCcEEEEe
Confidence            4789999999999999999999988999999998631                     1112233444555688999999


Q ss_pred             CCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         331 TNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       331 tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      +++.+..+..    +++.+..+.+|++++|.+++.+|.
T Consensus        88 ~~~~~~~~~~----l~~~~~~~~vv~l~~~~e~~~~R~  121 (175)
T 1knq_A           88 SALKKHYRDL----LREGNPNLSFIYLKGDFDVIESRL  121 (175)
T ss_dssp             CCCSHHHHHH----HHTTCTTEEEEEEECCHHHHHHHH
T ss_pred             CchHHHHHHH----HHhcCCCEEEEEEECCHHHHHHHH
Confidence            8876655544    344556778999999999999984

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=99.24  E-value=3.3e-11  Score=108.03  Aligned_cols=100  Identities=17%  Similarity=0.206  Sum_probs=77.7

Q ss_pred             ccccEEEEEEcCCCCcHHHHHHHHhccCC------cEEEeCCcchh----------------HHHHHHHHHHHHhCCCcE
Q psy4598         269 AALDSVLIMIGSQGSGKSSFVSTYLKPLN------YTTVNRDTLGS----------------WQKCVSVMKAALDSGLSV  326 (369)
Q Consensus       269 ~~~~~lIll~G~pGSGKSTla~~L~~~~~------~~~i~~D~~~~----------------~~~~~~~~~~~l~~g~~v  326 (369)
                      ..++.+|+|+|+|||||||+++.|++.++      +.+++.|.++.                ++.+...+..+++.|..|
T Consensus        22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~~~~~~~~~r~~~~~~~~~~~~~~l~~g~~V  101 (211)
T 1m7g_A           22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFADSNSIA  101 (211)
T ss_dssp             TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhccccCCCHHHHHHHHHHHHHHHHHHHHCCCEE
Confidence            34568999999999999999999998765      88888776531                222333455667889999


Q ss_pred             EEeCCCCCHHHHHHHHHHHH------hcCCeEEEEEEeCCHHHHHHHc
Q psy4598         327 VVDNTNPDKESRHRYIEAAK------QHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       327 IiD~tn~~~~~r~~~~~la~------~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      |+|........|..+..++.      ..+.+..+||+++|.+++.+|.
T Consensus       102 I~d~~~~~~~~~~~l~~l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~  149 (211)
T 1m7g_A          102 ITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRD  149 (211)
T ss_dssp             EEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred             EEecCCccHHHHHHHHHHhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence            99966555677888888776      4467889999999999999883

>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0

Probab=99.24  E-value=2.1e-11  Score=112.48  Aligned_cols=47  Identities=23%  Similarity=0.256  Sum_probs=42.2

Q ss_pred             CCCCCchhHHHHHHHHhcCCccccCCccEEeeCc-cccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         117 RYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDA-AGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       117 ~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~-~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      ..+||+|.+++.+++++    ++++++++||||+ .                +|+.+|+++|+.++..
T Consensus       180 ~~~kp~~~~~~~~~~~l----gi~~~~~~~iGD~~~----------------~Di~~~~~aG~~~~~v  227 (266)
T 3pdw_A          180 FIGKPESIIMEQAMRVL----GTDVSETLMVGDNYA----------------TDIMAGINAGMDTLLV  227 (266)
T ss_dssp             ECSTTSSHHHHHHHHHH----TCCGGGEEEEESCTT----------------THHHHHHHHTCEEEEE
T ss_pred             ccCCCCHHHHHHHHHHc----CCChhhEEEECCCcH----------------HHHHHHHHCCCeEEEE
Confidence            45899999999999996    7999999999999 6                8999999999988543

>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A

Probab=99.24  E-value=6.9e-12  Score=116.62  Aligned_cols=124  Identities=17%  Similarity=0.242  Sum_probs=83.9

Q ss_pred             CCCceEEEEecCCceeecC--------CCCCCCCCcccc-----ccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCC
Q psy4598          22 CNSAKIASFDLDGTLITTK--------SGKVFPVDTHDW-----KLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMS   88 (369)
Q Consensus        22 ~~~~k~~~fDlDgTLi~~~--------sg~~~~~~~~d~-----~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~   88 (369)
                      ....|+++||+||||+.+.        .+..|.....+|     ..++|++.+.|+.|+++|++++|+||.+.       
T Consensus        56 ~~~~kavifDlDGTLld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~e~L~~L~~~Gi~i~iaTnr~~-------  128 (258)
T 2i33_A           56 TEKKPAIVLDLDETVLDNSPHQAMSVKTGKGYPYKWDDWINKAEAEALPGSIDFLKYTESKGVDIYYISNRKT-------  128 (258)
T ss_dssp             CSSEEEEEECSBTTTEECHHHHHHHHHHSCCTTTTHHHHHHHCCCEECTTHHHHHHHHHHTTCEEEEEEEEEG-------
T ss_pred             CCCCCEEEEeCcccCcCCHHHHHHHHhcccchHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCEEEEEcCCch-------
Confidence            3567899999999999873        122341111222     45799999999999999999999999531       


Q ss_pred             HHHHHHHHHHHHHHcCCC----eEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCC
Q psy4598          89 TRDFQAKAEKIIKSLNVP----VQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKD  164 (369)
Q Consensus        89 ~~~~~~~i~~~l~~l~i~----~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d  164 (369)
                        .....+...|+.+|++    ++++++.+.  ..||.+  ...+.+.     +  ...++||||+.             
T Consensus       129 --~~~~~~~~~L~~~Gl~~v~~~~vi~~~~~--~~K~~~--~~~~~~~-----~--~~~~l~VGDs~-------------  182 (258)
T 2i33_A          129 --NQLDATIKNLERVGAPQATKEHILLQDPK--EKGKEK--RRELVSQ-----T--HDIVLFFGDNL-------------  182 (258)
T ss_dssp             --GGHHHHHHHHHHHTCSSCSTTTEEEECTT--CCSSHH--HHHHHHH-----H--EEEEEEEESSG-------------
T ss_pred             --hHHHHHHHHHHHcCCCcCCCceEEECCCC--CCCcHH--HHHHHHh-----C--CCceEEeCCCH-------------
Confidence              1133455667778876    456666543  246654  3333332     2  23499999999             


Q ss_pred             CCcccHHHHH-------h---------CCCCcc
Q psy4598         165 FACTDHLFAF-------N---------LNLAFF  181 (369)
Q Consensus       165 ~s~~D~~~A~-------n---------~Gi~f~  181 (369)
                         +|+.+|.       +         +|++++
T Consensus       183 ---~Di~aA~~~~~~~r~a~v~~~~~~aG~~~i  212 (258)
T 2i33_A          183 ---SDFTGFDGKSVKDRNQAVTDSKAQFGEKFI  212 (258)
T ss_dssp             ---GGSTTCSSCCHHHHHHHHHHTGGGBTTTEE
T ss_pred             ---HHhcccccCCHHHHHHHHHHHHHHhcCceE
Confidence               7998883       4         799875

>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}

Probab=99.24  E-value=4.6e-11  Score=111.45  Aligned_cols=47  Identities=28%  Similarity=0.260  Sum_probs=40.1

Q ss_pred             CCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCc
Q psy4598          23 NSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAI   82 (369)
Q Consensus        23 ~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi   82 (369)
                      .+.|+++||+||||+...             ..+|++.++|++|+++|++++++||+++.
T Consensus        12 ~~~k~i~~D~DGtL~~~~-------------~~~~~~~~~l~~l~~~g~~~~~~Tn~~~r   58 (284)
T 2hx1_A           12 PKYKCIFFDAFGVLKTYN-------------GLLPGIENTFDYLKAQGQDYYIVTNDASR   58 (284)
T ss_dssp             GGCSEEEECSBTTTEETT-------------EECTTHHHHHHHHHHTTCEEEEEECCCSS
T ss_pred             hcCCEEEEcCcCCcCcCC-------------eeChhHHHHHHHHHHCCCEEEEEeCCCCc
Confidence            457899999999999743             25799999999999999999999996653

>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13

Probab=99.23  E-value=4.5e-12  Score=124.27  Aligned_cols=100  Identities=18%  Similarity=0.225  Sum_probs=80.9

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeE--EEEecCCCC-----------CC
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQ--MFVATQYDR-----------YR  119 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~--~~~~~~~~~-----------~r  119 (369)
                      ++||+.+.|+.|+++|++++|+||.+            ...+..+++.+|+  +|+  .+++.++..           .+
T Consensus       216 l~pGv~elL~~Lk~~Gi~laIvTn~~------------~~~~~~~L~~lgL~~~Fd~~~Ivs~ddv~~~~~~~~~~kp~~  283 (384)
T 1qyi_A          216 PVDEVKVLLNDLKGAGFELGIATGRP------------YTETVVPFENLGLLPYFEADFIATASDVLEAENMYPQARPLG  283 (384)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEECSSC------------HHHHHHHHHHHTCGGGSCGGGEECHHHHHHHHHHSTTSCCCC
T ss_pred             cCcCHHHHHHHHHhCCCEEEEEeCCc------------HHHHHHHHHHcCChHhcCCCEEEecccccccccccccccCCC
Confidence            69999999999999999999999953            2345566777787  377  677765432           48


Q ss_pred             CCchhHHHHHHHHhc----------CCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         120 KPVPGMWEYLSQEKN----------GDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       120 KP~~gm~~~~~~~~~----------~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      ||+|.+|..+++.++          ....+++++|+||||+.                .|+.+|+++||+++.
T Consensus       284 KP~P~~~~~a~~~lg~~~~~~~~~~~~~~v~p~e~l~VGDs~----------------~Di~aAk~AG~~~I~  340 (384)
T 1qyi_A          284 KPNPFSYIAALYGNNRDKYESYINKQDNIVNKDDVFIVGDSL----------------ADLLSAQKIGATFIG  340 (384)
T ss_dssp             TTSTHHHHHHHHCCCGGGHHHHHHCCTTCSCTTTEEEEESSH----------------HHHHHHHHHTCEEEE
T ss_pred             CCCHHHHHHHHHHcCCccccccccccccCCCCcCeEEEcCCH----------------HHHHHHHHcCCEEEE
Confidence            999999999998752          01127899999999999                899999999999864

>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii}

Probab=99.23  E-value=3e-11  Score=109.31  Aligned_cols=97  Identities=18%  Similarity=0.240  Sum_probs=83.0

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|+++|++++|+||..            ...+..+++.+|+.  |+.+++.+....+||+|.++..++++
T Consensus        95 ~~~~~~~~l~~l~~~g~~~~i~t~~~------------~~~~~~~l~~~~l~~~f~~~~~~~~~~~~Kp~~~~~~~~~~~  162 (241)
T 2hoq_A           95 EVPGARKVLIRLKELGYELGIITDGN------------PVKQWEKILRLELDDFFEHVIISDFEGVKKPHPKIFKKALKA  162 (241)
T ss_dssp             BCTTHHHHHHHHHHHTCEEEEEECSC------------HHHHHHHHHHTTCGGGCSEEEEGGGGTCCTTCHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHCCCEEEEEECCC------------chhHHHHHHHcCcHhhccEEEEeCCCCCCCCCHHHHHHHHHH
Confidence            57999999999999999999999942            22345667788883  78888888888999999999999998


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    ++++++++||||+..               +|+.+|+++|+.++.
T Consensus       163 ~----g~~~~~~i~iGD~~~---------------~Di~~a~~aG~~~~~  193 (241)
T 2hoq_A          163 F----NVKPEEALMVGDRLY---------------SDIYGAKRVGMKTVW  193 (241)
T ss_dssp             H----TCCGGGEEEEESCTT---------------TTHHHHHHTTCEEEE
T ss_pred             c----CCCcccEEEECCCch---------------HhHHHHHHCCCEEEE
Confidence            6    789999999999962               699999999999864

>2fdr_A Conserved hypothetical protein; SAD, structural genomics, agrobacter tumefaciens, HAD-superfamily hydrolase; 2.00A {Agrobacterium tumefaciens str} SCOP: c.108.1.6

Probab=99.22  E-value=1.2e-12  Score=116.78  Aligned_cols=93  Identities=9%  Similarity=0.109  Sum_probs=74.8

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--e-EEEEecCCCCCC--CCchhHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--V-QMFVATQYDRYR--KPVPGMWEYL  129 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~-~~~~~~~~~~~r--KP~~gm~~~~  129 (369)
                      ++|++.+.|+.|+.   +++|+||..            ...+..+++.+++.  | +.+++.+....+  ||+|.+++.+
T Consensus        88 ~~~~~~~~l~~l~~---~~~i~s~~~------------~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~kpk~~~~~~~  152 (229)
T 2fdr_A           88 IIDGVKFALSRLTT---PRCICSNSS------------SHRLDMMLTKVGLKPYFAPHIYSAKDLGADRVKPKPDIFLHG  152 (229)
T ss_dssp             BCTTHHHHHHHCCS---CEEEEESSC------------HHHHHHHHHHTTCGGGTTTCEEEHHHHCTTCCTTSSHHHHHH
T ss_pred             cCcCHHHHHHHhCC---CEEEEECCC------------hhHHHHHHHhCChHHhccceEEeccccccCCCCcCHHHHHHH
Confidence            46788888877753   899999943            22345667777874  6 666776665677  9999999999


Q ss_pred             HHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         130 SQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       130 ~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      ++++    +++++++++|||+.                .|+.+|.++|+.++.
T Consensus       153 ~~~l----~~~~~~~i~iGD~~----------------~Di~~a~~aG~~~i~  185 (229)
T 2fdr_A          153 AAQF----GVSPDRVVVVEDSV----------------HGIHGARAAGMRVIG  185 (229)
T ss_dssp             HHHH----TCCGGGEEEEESSH----------------HHHHHHHHTTCEEEE
T ss_pred             HHHc----CCChhHeEEEcCCH----------------HHHHHHHHCCCEEEE
Confidence            9996    79999999999999                899999999999754

>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle, B-hairpin, structural genomics, BSGC structure funded by NIH; 1.48A {Methanocaldococcus jannaschii} SCOP: c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*

Probab=99.22  E-value=9.6e-12  Score=109.21  Aligned_cols=94  Identities=15%  Similarity=0.180  Sum_probs=70.1

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCC----------CCCCCCc
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQY----------DRYRKPV  122 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~----------~~~rKP~  122 (369)
                      ++|++.+.|+.|+++|++++|+||..            ...+..+++.+++.  |...+...+          ....+++
T Consensus        77 l~~~~~~~l~~l~~~g~~~~i~T~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~K  144 (211)
T 1l7m_A           77 PTEGAEETIKELKNRGYVVAVVSGGF------------DIAVNKIKEKLGLDYAFANRLIVKDGKLTGDVEGEVLKENAK  144 (211)
T ss_dssp             BCTTHHHHHHHHHHTTEEEEEEEEEE------------HHHHHHHHHHHTCSEEEEEEEEEETTEEEEEEECSSCSTTHH
T ss_pred             CCccHHHHHHHHHHCCCEEEEEcCCc------------HHHHHHHHHHcCCCeEEEeeeEEECCEEcCCcccCccCCccH
Confidence            57999999999999999999999832            11223456667764  322111111          1234667


Q ss_pred             hhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc
Q psy4598         123 PGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF  180 (369)
Q Consensus       123 ~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f  180 (369)
                      +..+..+++++    ++++++++||||+.                +|+.+|.++|+.+
T Consensus       145 ~~~l~~~~~~l----gi~~~~~~~iGD~~----------------~Di~~~~~ag~~~  182 (211)
T 1l7m_A          145 GEILEKIAKIE----GINLEDTVAVGDGA----------------NDISMFKKAGLKI  182 (211)
T ss_dssp             HHHHHHHHHHH----TCCGGGEEEEECSG----------------GGHHHHHHCSEEE
T ss_pred             HHHHHHHHHHc----CCCHHHEEEEecCh----------------hHHHHHHHCCCEE
Confidence            88999999886    79999999999998                8999999999975

>2p11_A Hypothetical protein; putative haloacid dehalogenase-like hydrolase, structural GE joint center for structural genomics, JCSG; 2.20A {Burkholderia xenovorans}

Probab=99.20  E-value=1.5e-12  Score=117.74  Aligned_cols=89  Identities=13%  Similarity=0.085  Sum_probs=64.9

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++||+.+.|+.|+++| +++|+||.+.            ..+..+++.+|+.  |+..++.     .+|+|.++..+.+ 
T Consensus        97 ~~~g~~~~l~~l~~~g-~~~i~Tn~~~------------~~~~~~l~~~gl~~~f~~~~~~-----~~~K~~~~~~~~~-  157 (231)
T 2p11_A           97 VYPGALNALRHLGARG-PTVILSDGDV------------VFQPRKIARSGLWDEVEGRVLI-----YIHKELMLDQVME-  157 (231)
T ss_dssp             BCTTHHHHHHHHHTTS-CEEEEEECCS------------SHHHHHHHHTTHHHHTTTCEEE-----ESSGGGCHHHHHH-
T ss_pred             cCccHHHHHHHHHhCC-CEEEEeCCCH------------HHHHHHHHHcCcHHhcCeeEEe-----cCChHHHHHHHHh-
Confidence            6899999999999999 9999999642            1234455666652  3211111     1334678877765 


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcc---cHHHHHhCCCCccCc
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACT---DHLFAFNLNLAFFTP  183 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~---D~~~A~n~Gi~f~~p  183 (369)
                           ++++++|+||||+.                .   |+.+|+++||+++..
T Consensus       158 -----~~~~~~~~~vgDs~----------------~d~~di~~A~~aG~~~i~v  190 (231)
T 2p11_A          158 -----CYPARHYVMVDDKL----------------RILAAMKKAWGARLTTVFP  190 (231)
T ss_dssp             -----HSCCSEEEEECSCH----------------HHHHHHHHHHGGGEEEEEE
T ss_pred             -----cCCCceEEEEcCcc----------------chhhhhHHHHHcCCeEEEe
Confidence                 36899999999998                6   999999999998643

>2i7d_A 5'(3')-deoxyribonucleotidase, cytosolic type; hydrolase; HET: DUR; 1.20A {Homo sapiens} PDB: 2jar_A* 2jao_A*

Probab=99.20  E-value=2.5e-13  Score=119.95  Aligned_cols=81  Identities=9%  Similarity=-0.018  Sum_probs=60.1

Q ss_pred             ccccHHHHHHHHHHC-CcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCchhHHHHHHHHh
Q psy4598          55 LFSNIESVLKQYLDD-GYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEK  133 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~-G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~  133 (369)
                      ++||+.+.|++|+++ |++++|+||.+...            +..+++.+|+ |+.+++.              .+++++
T Consensus        74 ~~~g~~e~L~~L~~~~g~~~~ivT~~~~~~------------~~~~l~~~gl-f~~i~~~--------------~~~~~~  126 (193)
T 2i7d_A           74 PIPGALDAVREMNDLPDTQVFICTSPLLKY------------HHCVGEKYRW-VEQHLGP--------------QFVERI  126 (193)
T ss_dssp             BCTTHHHHHHHHHTSTTEEEEEEECCCSSC------------TTTHHHHHHH-HHHHHCH--------------HHHTTE
T ss_pred             cCcCHHHHHHHHHhCCCCeEEEEeCCChhh------------HHHHHHHhCc-hhhhcCH--------------HHHHHc
Confidence            689999999999999 99999999965321            1122334444 4433332              155554


Q ss_pred             cCCccccCCccEEeeCccccccccCCCCCCCCCccc----HHHHH-hCCCCccC
Q psy4598         134 NGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTD----HLFAF-NLNLAFFT  182 (369)
Q Consensus       134 ~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D----~~~A~-n~Gi~f~~  182 (369)
                          ++++++++||||+.                .|    +.+|. ++|++.+.
T Consensus       127 ----~~~~~~~~~vgDs~----------------~dD~~~i~~A~~~aG~~~i~  160 (193)
T 2i7d_A          127 ----ILTRDKTVVLGDLL----------------IDDKDTVRGQEETPSWEHIL  160 (193)
T ss_dssp             ----EECSCGGGBCCSEE----------------EESSSCCCSSCSSCSSEEEE
T ss_pred             ----CCCcccEEEECCch----------------hhCcHHHhhcccccccceEE
Confidence                78999999999998                66    99999 99999864

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=99.20  E-value=8.8e-11  Score=102.76  Aligned_cols=97  Identities=13%  Similarity=0.186  Sum_probs=71.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchhH---------H----H----------------HHHHHHH---H
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSW---------Q----K----------------CVSVMKA---A  319 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~~---------~----~----------------~~~~~~~---~  319 (369)
                      +.+|+|+|+|||||||+++.|++.+++.+++.|.+-..         .    .                +...+..   .
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~   82 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAA   82 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhhhcc
Confidence            57899999999999999999999999999998875210         0    0                0111111   1


Q ss_pred             HhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         320 LDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       320 l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      +..+..||+|+...+...+..|...+......-.+|++++|.+++.+|.
T Consensus        83 ~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~  131 (196)
T 1tev_A           83 NAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERC  131 (196)
T ss_dssp             CTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHH
T ss_pred             ccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHH
Confidence            2347789999999888877777666544333447899999999999884

>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}

Probab=99.20  E-value=1.1e-10  Score=107.94  Aligned_cols=46  Identities=22%  Similarity=0.256  Sum_probs=40.1

Q ss_pred             CCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         117 RYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       117 ~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      ..+||+|.+|+.++++      +++++++||||+..               +|+.+|+++|++++..
T Consensus       184 ~~~KP~~~~~~~~~~~------~~~~~~~~VGD~~~---------------~Di~~A~~aG~~~i~v  229 (263)
T 1zjj_A          184 IIGKPNEPMYEVVREM------FPGEELWMVGDRLD---------------TDIAFAKKFGMKAIMV  229 (263)
T ss_dssp             ECSTTSHHHHHHHHHH------STTCEEEEEESCTT---------------THHHHHHHTTCEEEEE
T ss_pred             EecCCCHHHHHHHHHh------CCcccEEEECCChH---------------HHHHHHHHcCCeEEEE
Confidence            3689999999999986      67999999999952               8999999999998643

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=99.18  E-value=5.5e-11  Score=105.70  Aligned_cols=96  Identities=17%  Similarity=0.223  Sum_probs=73.3

Q ss_pred             ccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh---------------------HHHHHHHHHHHHhCCCcEE
Q psy4598         269 AALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS---------------------WQKCVSVMKAALDSGLSVV  327 (369)
Q Consensus       269 ~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~---------------------~~~~~~~~~~~l~~g~~vI  327 (369)
                      ...+.+|+|+|+|||||||+++.|+..++..+++.|.+..                     +..+...+...+..+..+|
T Consensus        26 ~~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~vi  105 (200)
T 4eun_A           26 GEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSLAEWMDARADAGVSTI  105 (200)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHHHHHHHHHHhcCCCEE
Confidence            3445799999999999999999999999999999998621                     1223344455567788999


Q ss_pred             EeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         328 VDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       328 iD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      +|.+...+..|..+.    +...++.+|++++|.+++.+|.
T Consensus       106 id~~~~~~~~~~~l~----~~~~~~~vv~l~~~~e~l~~Rl  142 (200)
T 4eun_A          106 ITCSALKRTYRDVLR----EGPPSVDFLHLDGPAEVIKGRM  142 (200)
T ss_dssp             EEECCCCHHHHHHHT----TSSSCCEEEEEECCHHHHHHHH
T ss_pred             EEchhhhHHHHHHHH----HhCCceEEEEEeCCHHHHHHHH
Confidence            999988876665543    3334667899999999999884

>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophos phosphatase; hydrolase; 1.92A {Homo sapiens}

Probab=99.17  E-value=1.9e-10  Score=105.04  Aligned_cols=46  Identities=20%  Similarity=0.178  Sum_probs=41.3

Q ss_pred             CCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         118 YRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       118 ~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      .+||+|.+++.+++++    +++++++++|||+..               +|+.+|+++|+.++.
T Consensus       188 ~~kpk~~~~~~~~~~l----gi~~~~~i~iGD~~~---------------nDi~~a~~aG~~~~~  233 (271)
T 2x4d_A          188 VGKPSPEFFKSALQAI----GVEAHQAVMIGDDIV---------------GDVGGAQRCGMRALQ  233 (271)
T ss_dssp             ESTTCHHHHHHHHHHH----TCCGGGEEEEESCTT---------------TTHHHHHHTTCEEEE
T ss_pred             ccCCCHHHHHHHHHHh----CCCcceEEEECCCcH---------------HHHHHHHHCCCcEEE
Confidence            4899999999999986    799999999999962               799999999999854

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=99.16  E-value=1.5e-10  Score=102.62  Aligned_cols=100  Identities=14%  Similarity=0.227  Sum_probs=73.9

Q ss_pred             ccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh-------H-H---------------HHHHHHHHHH---h
Q psy4598         269 AALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS-------W-Q---------------KCVSVMKAAL---D  321 (369)
Q Consensus       269 ~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~-------~-~---------------~~~~~~~~~l---~  321 (369)
                      +.++.+|+|+|+|||||||+++.|++.+++.+++.|.+ +.       . .               .....+.+.+   .
T Consensus        17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~   96 (201)
T 2cdn_A           17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPD   96 (201)
T ss_dssp             CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGG
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHHcCChHHHHHHHHHHcCCcccHHHHHHHHHHHHhccc
Confidence            34467999999999999999999999999999998765 21       0 0               0111222222   2


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHHHHhcCCe-EEEEEEeCCHHHHHHHc
Q psy4598         322 SGLSVVVDNTNPDKESRHRYIEAAKQHGVR-CIAVHMNISKEHAKHNI  368 (369)
Q Consensus       322 ~g~~vIiD~tn~~~~~r~~~~~la~~~~~~-v~~v~l~~~~e~~~~Rn  368 (369)
                      .+..||+|+...+...+..+..++...+.. ..+|++++|.+++.+|.
T Consensus        97 ~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl  144 (201)
T 2cdn_A           97 AANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERL  144 (201)
T ss_dssp             GTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHH
T ss_pred             CCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHH
Confidence            466899999877777787777777766653 37899999999999884

>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*

Probab=99.13  E-value=4e-10  Score=109.22  Aligned_cols=47  Identities=23%  Similarity=0.357  Sum_probs=41.1

Q ss_pred             CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcC
Q psy4598          24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIG   83 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~   83 (369)
                      +.|.++||+||||+...             ..+|++.+.|+.|++.|++++++||+++.+
T Consensus        12 ~~~~~l~D~DGvl~~g~-------------~~~p~a~~~l~~l~~~g~~~~~vTNn~~~~   58 (352)
T 3kc2_A           12 KKIAFAFDIDGVLFRGK-------------KPIAGASDALKLLNRNKIPYILLTNGGGFS   58 (352)
T ss_dssp             CCEEEEECCBTTTEETT-------------EECTTHHHHHHHHHHTTCCEEEECSCCSSC
T ss_pred             cCCEEEEECCCeeEcCC-------------eeCcCHHHHHHHHHHCCCEEEEEeCCCCCC
Confidence            57899999999999753             268999999999999999999999987543

>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural genomics, PSI, protein STRU initiative, nysgrc; 2.30A {Vibrio cholerae}

Probab=99.13  E-value=1.5e-11  Score=118.01  Aligned_cols=95  Identities=14%  Similarity=0.144  Sum_probs=77.3

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEE----------ecCCCCCCCCc
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFV----------ATQYDRYRKPV  122 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~----------~~~~~~~rKP~  122 (369)
                      ++|++.+.|+.|++.|++++|+||..            ...++.+++.+|+.  |...+          ..+....+||+
T Consensus       179 ~~pg~~~~l~~L~~~g~~~~ivS~~~------------~~~~~~~~~~lgl~~~~~~~l~~~d~~~tg~~~~~~~~~kpk  246 (335)
T 3n28_A          179 LMPELPELVATLHAFGWKVAIASGGF------------TYFSDYLKEQLSLDYAQSNTLEIVSGKLTGQVLGEVVSAQTK  246 (335)
T ss_dssp             CCTTHHHHHHHHHHTTCEEEEEEEEE------------HHHHHHHHHHHTCSEEEEEEEEEETTEEEEEEESCCCCHHHH
T ss_pred             cCcCHHHHHHHHHHCCCEEEEEeCCc------------HHHHHHHHHHcCCCeEEeeeeEeeCCeeeeeecccccChhhh
Confidence            68999999999999999999999932            34456677888874  22111          11355678999


Q ss_pred             hhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         123 PGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       123 ~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      |.++..+++++    ++++++++||||+.                .|+.+|.++|+.+.
T Consensus       247 ~~~~~~~~~~l----gi~~~~~v~vGDs~----------------nDi~~a~~aG~~va  285 (335)
T 3n28_A          247 ADILLTLAQQY----DVEIHNTVAVGDGA----------------NDLVMMAAAGLGVA  285 (335)
T ss_dssp             HHHHHHHHHHH----TCCGGGEEEEECSG----------------GGHHHHHHSSEEEE
T ss_pred             HHHHHHHHHHc----CCChhhEEEEeCCH----------------HHHHHHHHCCCeEE
Confidence            99999999996    79999999999999                89999999999874

>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} SCOP: c.108.1.14

Probab=99.13  E-value=1.1e-10  Score=104.88  Aligned_cols=46  Identities=22%  Similarity=0.234  Sum_probs=42.1

Q ss_pred             CCCCCchhHHHHHHHHhcCCccccCCccEEeeCc-cccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         117 RYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDA-AGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       117 ~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~-~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      ..+||+|.+++.+++++    +++++++++|||+ .                +|+.+|+++|+.++.
T Consensus       173 ~~~kpk~~~~~~~~~~l----gi~~~~~i~iGD~~~----------------nDi~~~~~aG~~~~~  219 (250)
T 2c4n_A          173 YVGKPSPWIIRAALNKM----QAHSEETVIVGDNLR----------------TDILAGFQAGLETIL  219 (250)
T ss_dssp             ECSTTSTHHHHHHHHHH----TCCGGGEEEEESCTT----------------THHHHHHHTTCEEEE
T ss_pred             EeCCCCHHHHHHHHHHc----CCCcceEEEECCCch----------------hHHHHHHHcCCeEEE
Confidence            47899999999999996    7999999999999 7                899999999999754

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=99.12  E-value=2.2e-10  Score=101.81  Aligned_cols=100  Identities=17%  Similarity=0.219  Sum_probs=77.9

Q ss_pred             ccccccEEEEEEcCCCCcHHHHHHHHhccC---CcE--EEeCCcchh----------------HHHHHHHHHHHHhCCCc
Q psy4598         267 MKAALDSVLIMIGSQGSGKSSFVSTYLKPL---NYT--TVNRDTLGS----------------WQKCVSVMKAALDSGLS  325 (369)
Q Consensus       267 ~~~~~~~lIll~G~pGSGKSTla~~L~~~~---~~~--~i~~D~~~~----------------~~~~~~~~~~~l~~g~~  325 (369)
                      +....+.+|+|+|+|||||||+++.|+..+   +..  +++.|.++.                +......+......+..
T Consensus        20 ~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   99 (200)
T 3uie_A           20 LLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNRDLSFKAEDRAENIRRVGEVAKLFADAGII   99 (200)
T ss_dssp             HHTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             hcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhcccCcChHHHHHHHHHHHHHHHHHHhCCce
Confidence            334456899999999999999999999876   554  888887631                22333455556678889


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         326 VVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       326 vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      +|++..+..+..|..+.+++.  +..+..||+++|.+++.+|.
T Consensus       100 vi~~~~~~~~~~r~~~~~~~~--~~~~~~v~L~a~~e~~~~R~  140 (200)
T 3uie_A          100 CIASLISPYRTDRDACRSLLP--EGDFVEVFMDVPLSVCEARD  140 (200)
T ss_dssp             EEEECCCCCHHHHHHHHHTSC--TTSEEEEEECCCHHHHHHHC
T ss_pred             EEEecCCchHHHHHHHHHhcC--CCCEEEEEEeCCHHHHHHhc
Confidence            999999988888888876554  55788899999999999984

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=99.11  E-value=2.8e-10  Score=97.42  Aligned_cols=91  Identities=16%  Similarity=0.193  Sum_probs=69.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hhH---------------H---------HHHHHHHHHH--hCCCc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GSW---------------Q---------KCVSVMKAAL--DSGLS  325 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~~---------------~---------~~~~~~~~~l--~~g~~  325 (369)
                      ++|+|+|+|||||||+++.| +.+++.+++.|++ +..               .         .....+...+  ..+..
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   80 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEAKPGERLMDFAKRLREIYGDGVVARLCVEELGTSNHDL   80 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC---CCHHHHHHHHHHHHCTTHHHHHHHHHHCSCCCSC
T ss_pred             cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcCCChhHHHHHHHHHHhhCCHHHHHHHHHHHHHhcCCCe
Confidence            47999999999999999999 8899999997654 210               0         0122344455  56778


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         326 VVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       326 vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      ||+|+. .....+..+.+.+   +.+..+|++++|.+++.+|.
T Consensus        81 vi~dg~-~~~~~~~~l~~~~---~~~~~~i~l~~~~~~~~~R~  119 (179)
T 3lw7_A           81 VVFDGV-RSLAEVEEFKRLL---GDSVYIVAVHSPPKIRYKRM  119 (179)
T ss_dssp             EEEECC-CCHHHHHHHHHHH---CSCEEEEEEECCHHHHHHHH
T ss_pred             EEEeCC-CCHHHHHHHHHHh---CCCcEEEEEECCHHHHHHHH
Confidence            999998 7788777776655   35788999999999999884

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=99.10  E-value=2.9e-10  Score=99.76  Aligned_cols=94  Identities=14%  Similarity=0.282  Sum_probs=68.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchhH----------------------------HHHHHHHHHHHhCC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSW----------------------------QKCVSVMKAALDSG  323 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~~----------------------------~~~~~~~~~~l~~g  323 (369)
                      +.+|+|+|+|||||||+++.|++.+++.+++.|.+-..                            ..+...+...+..|
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~~   88 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGSARGKKLSEIMEKGQLVPLETVLDMLRDAMVAKVNTS   88 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhccccC
Confidence            46899999999999999999999999999998875210                            01122233344578


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         324 LSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       324 ~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      ..||+|........+..+...+   ..+-.+|++++|.+++.+|.
T Consensus        89 ~~vi~d~~~~~~~~~~~~~~~~---~~~~~vi~l~~~~e~~~~R~  130 (196)
T 2c95_A           89 KGFLIDGYPREVQQGEEFERRI---GQPTLLLYVDAGPETMTQRL  130 (196)
T ss_dssp             SCEEEESCCCSHHHHHHHHHHT---CCCSEEEEEECCHHHHHHHH
T ss_pred             CcEEEeCCCCCHHHHHHHHHhc---CCCCEEEEEECCHHHHHHHH
Confidence            8999998776666555554433   23347899999999998884

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=99.10  E-value=3.7e-10  Score=101.64  Aligned_cols=97  Identities=15%  Similarity=0.251  Sum_probs=71.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hhH-----------------------HHHHHHHHHHHh----CC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GSW-----------------------QKCVSVMKAALD----SG  323 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~~-----------------------~~~~~~~~~~l~----~g  323 (369)
                      +.+|+|+|+|||||||+++.|++.+++.+++.|++ +..                       ......+...+.    .+
T Consensus         4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~l~~~l~~~~~~~   83 (220)
T 1aky_A            4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACK   83 (220)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGGG
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHHhccccC
Confidence            46899999999999999999999999999999765 210                       011223334443    46


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHHHhcCCeE-EEEEEeCCHHHHHHHc
Q psy4598         324 LSVVVDNTNPDKESRHRYIEAAKQHGVRC-IAVHMNISKEHAKHNI  368 (369)
Q Consensus       324 ~~vIiD~tn~~~~~r~~~~~la~~~~~~v-~~v~l~~~~e~~~~Rn  368 (369)
                      ..+|+|+...+...+..+..++...+..+ .+|++++|.+++.+|.
T Consensus        84 ~~~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R~  129 (220)
T 1aky_A           84 NGFILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVARI  129 (220)
T ss_dssp             SCEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHH
T ss_pred             CCeEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHH
Confidence            68999986556666666666666666554 6999999999999883

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=99.10  E-value=3.6e-10  Score=98.57  Aligned_cols=95  Identities=15%  Similarity=0.245  Sum_probs=70.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh--------H----------------HHHHHHHHHHHhCCCcEE
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS--------W----------------QKCVSVMKAALDSGLSVV  327 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~--------~----------------~~~~~~~~~~l~~g~~vI  327 (369)
                      +.+|+|+|+|||||||+++.|++.+++.+++.|.+-.        .                ......+...+..+  +|
T Consensus         4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~l~~~--~i   81 (186)
T 3cm0_A            4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVARGTPLGERVRPIMERGDLVPDDLILELIREELAER--VI   81 (186)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHCCSE--EE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHHcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHhcCC--EE
Confidence            4689999999999999999999999999999875421        0                01122233334333  99


Q ss_pred             EeCCCCCHHHHHHHHHHHHhcCC-eEEEEEEeCCHHHHHHHc
Q psy4598         328 VDNTNPDKESRHRYIEAAKQHGV-RCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       328 iD~tn~~~~~r~~~~~la~~~~~-~v~~v~l~~~~e~~~~Rn  368 (369)
                      +|........+..+..++.+.+. +-.++++++|.+++.+|.
T Consensus        82 ~dg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R~  123 (186)
T 3cm0_A           82 FDGFPRTLAQAEALDRLLSETGTRLLGVVLVEVPEEELVRRI  123 (186)
T ss_dssp             EESCCCSHHHHHHHHHHHHHTTEEEEEEEEEECCHHHHHHHH
T ss_pred             EeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHH
Confidence            99988777777666666776665 347899999999998873

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=99.10  E-value=3.7e-10  Score=101.04  Aligned_cols=95  Identities=8%  Similarity=0.203  Sum_probs=73.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch-h-----------------------HHHHHHHHHHHHh---CCCcE
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG-S-----------------------WQKCVSVMKAALD---SGLSV  326 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~-~-----------------------~~~~~~~~~~~l~---~g~~v  326 (369)
                      .|+|+|+|||||||+++.|++.+++.+++.|.+- .                       .......+.+.+.   .+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~   81 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKNGTELGLKAKSFMDQGNLVPDEVTIGIVHERLSKDDCQKGF   81 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccCCCcE
Confidence            4789999999999999999999999999997652 1                       0112233344443   37789


Q ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCeE-EEEEEeCCHHHHHHHc
Q psy4598         327 VVDNTNPDKESRHRYIEAAKQHGVRC-IAVHMNISKEHAKHNI  368 (369)
Q Consensus       327 IiD~tn~~~~~r~~~~~la~~~~~~v-~~v~l~~~~e~~~~Rn  368 (369)
                      |+|+.......+..+...+...+..+ .++++++|.+++.+|-
T Consensus        82 ildg~p~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl  124 (216)
T 3fb4_A           82 LLDGFPRTVAQADALDSLLTDLGKKLDYVLNIKVEQEELMKRL  124 (216)
T ss_dssp             EEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHH
T ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHH
Confidence            99998888888888888877777665 7899999999999884

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=99.10  E-value=3.7e-10  Score=101.15  Aligned_cols=95  Identities=12%  Similarity=0.226  Sum_probs=74.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh-----------------------HHHHHHHHHHHHh---CCCcE
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS-----------------------WQKCVSVMKAALD---SGLSV  326 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~-----------------------~~~~~~~~~~~l~---~g~~v  326 (369)
                      .|+|+|+|||||||+++.|++.+++.+++.|++ +.                       .......+...+.   .+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~   81 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKEETPLGLEAKSYIDKGELVPDEVTIGIVKERLGKDDCERGF   81 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHTSGGGTTCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhcCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcccccCCE
Confidence            478999999999999999999999999999765 21                       1112233344443   37789


Q ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCeE-EEEEEeCCHHHHHHHc
Q psy4598         327 VVDNTNPDKESRHRYIEAAKQHGVRC-IAVHMNISKEHAKHNI  368 (369)
Q Consensus       327 IiD~tn~~~~~r~~~~~la~~~~~~v-~~v~l~~~~e~~~~Rn  368 (369)
                      |+|+.......+..+.+.+...+..+ .++++++|.+++.+|.
T Consensus        82 ildg~p~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl  124 (216)
T 3dl0_A           82 LLDGFPRTVAQAEALEEILEEMGKPIDYVINIQVDKDVLMERL  124 (216)
T ss_dssp             EEESCCCSHHHHHHHHHHHHHTTCCCSEEEEEECCGGGHHHHH
T ss_pred             EEeCCCCCHHHHHHHHHHHHHcCCCCCEEEEEECCHHHHHHHH
Confidence            99998888888888888877777655 7899999999999884

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=99.10  E-value=3.1e-10  Score=99.88  Aligned_cols=95  Identities=16%  Similarity=0.257  Sum_probs=69.3

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchhH----------------------------HHHHHHHHHHHhC
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSW----------------------------QKCVSVMKAALDS  322 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~~----------------------------~~~~~~~~~~l~~  322 (369)
                      ++.+|+|+|+|||||||+++.|++.+++.+++.|.+-..                            ..+...+...+..
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~i~~~~~~   90 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELASESERSKLIRDIMERGDLVPSGIVLELLKEAMVASLGD   90 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHhCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHhccccc
Confidence            467999999999999999999999999999998876210                            0011122233346


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         323 GLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       323 g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      +..||+|....+...+..+..   ..+.+-.+|++++|.+++.+|.
T Consensus        91 ~~~vi~dg~~~~~~~~~~l~~---~~~~~~~~i~l~~~~~~~~~R~  133 (199)
T 2bwj_A           91 TRGFLIDGYPREVKQGEEFGR---RIGDPQLVICMDCSADTMTNRL  133 (199)
T ss_dssp             CSCEEEETCCSSHHHHHHHHH---HTCCCSEEEEEECCHHHHHHHH
T ss_pred             CccEEEeCCCCCHHHHHHHHH---hcCCCCEEEEEECCHHHHHHHH
Confidence            789999998877776665543   2223336899999999998883

>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion, structural genomics, PSI, protein structure initiative; HET: KEG; 2.10A {Homo sapiens}

Probab=99.09  E-value=3.2e-11  Score=107.47  Aligned_cols=119  Identities=14%  Similarity=0.192  Sum_probs=91.2

Q ss_pred             CCceEEEEecCCceeecCCCCCCCCCccc--------------cccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCC
Q psy4598          23 NSAKIASFDLDGTLITTKSGKVFPVDTHD--------------WKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMS   88 (369)
Q Consensus        23 ~~~k~~~fDlDgTLi~~~sg~~~~~~~~d--------------~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~   88 (369)
                      .+.+.+++|||+||+.+.....   ...|              +..+.||+.+.|++|++. |.++|+||..        
T Consensus        26 ~~k~~LVLDLD~TLvhs~~~~~---~~~d~~~~~~~~g~~~~~~v~~RPgv~efL~~l~~~-~~i~I~Tss~--------   93 (195)
T 2hhl_A           26 YGKKCVVIDLDETLVHSSFKPI---SNADFIVPVEIDGTIHQVYVLKRPHVDEFLQRMGQL-FECVLFTASL--------   93 (195)
T ss_dssp             TTCCEEEECCBTTTEEEESSCC---TTCSEEEEEEETTEEEEEEEEECTTHHHHHHHHHHH-SEEEEECSSC--------
T ss_pred             CCCeEEEEccccceEcccccCC---CCccceeeeecCCceeeEEEEeCcCHHHHHHHHHcC-CeEEEEcCCC--------
Confidence            4578999999999998753111   1111              134689999999999998 9999999943        


Q ss_pred             HHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCC
Q psy4598          89 TRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFA  166 (369)
Q Consensus        89 ~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s  166 (369)
                          +..++.+++.+++  .|...++.+++...|   +.+...++.+    +.+++++++|+|+.               
T Consensus        94 ----~~~a~~vl~~ld~~~~f~~~l~rd~~~~~k---~~~lK~L~~L----g~~~~~~vivDDs~---------------  147 (195)
T 2hhl_A           94 ----AKYADPVADLLDRWGVFRARLFRESCVFHR---GNYVKDLSRL----GRELSKVIIVDNSP---------------  147 (195)
T ss_dssp             ----HHHHHHHHHHHCCSSCEEEEECGGGCEEET---TEEECCGGGS----SSCGGGEEEEESCG---------------
T ss_pred             ----HHHHHHHHHHhCCcccEEEEEEcccceecC---CceeeeHhHh----CCChhHEEEEECCH---------------
Confidence                3456677777776  378777777666555   6666667664    78999999999999               


Q ss_pred             cccHHHHHhCCCCc
Q psy4598         167 CTDHLFAFNLNLAF  180 (369)
Q Consensus       167 ~~D~~~A~n~Gi~f  180 (369)
                       .++.+|.++||..
T Consensus       148 -~~~~~~~~ngi~i  160 (195)
T 2hhl_A          148 -ASYIFHPENAVPV  160 (195)
T ss_dssp             -GGGTTCGGGEEEC
T ss_pred             -HHhhhCccCccEE
Confidence             7999999999985

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=99.07  E-value=5.7e-10  Score=100.19  Aligned_cols=95  Identities=13%  Similarity=0.270  Sum_probs=75.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCc-chhH-----------------------HHHHHHHHHHHhCCCcEEEe
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDT-LGSW-----------------------QKCVSVMKAALDSGLSVVVD  329 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~-~~~~-----------------------~~~~~~~~~~l~~g~~vIiD  329 (369)
                      +|+|.|||||||+|.|+.|++.+++.||+..+ +|..                       +.....+.+.+.....+|+|
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv~~lv~~~l~~~~~~ilD   81 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGTPLGKKAKEYMERGELVPDDLIIALIEEVFPKHGNVIFD   81 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSSSCEEEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHHHHHHHHhhccCCceEec
Confidence            58899999999999999999999999999754 4310                       11234455666666679999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeE-EEEEEeCCHHHHHHHc
Q psy4598         330 NTNPDKESRHRYIEAAKQHGVRC-IAVHMNISKEHAKHNI  368 (369)
Q Consensus       330 ~tn~~~~~r~~~~~la~~~~~~v-~~v~l~~~~e~~~~Rn  368 (369)
                      +...+..+...+.......+.++ .++++++|.+++.+|-
T Consensus        82 GfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl  121 (206)
T 3sr0_A           82 GFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERL  121 (206)
T ss_dssp             SCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHH
T ss_pred             CCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHH
Confidence            99888888888877777777654 6889999999998883

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=99.06  E-value=7.7e-10  Score=114.38  Aligned_cols=98  Identities=15%  Similarity=0.219  Sum_probs=78.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC---Cc--EEEeCCcchh----------------HHHHHHHHHHHHhCCCcEEEe
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL---NY--TTVNRDTLGS----------------WQKCVSVMKAALDSGLSVVVD  329 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~---~~--~~i~~D~~~~----------------~~~~~~~~~~~l~~g~~vIiD  329 (369)
                      ++.+|+|+|+|||||||+|+.|++.+   ++  ..++.|.++.                ++++.+.+...++.|..||.|
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~~~~fs~~dree~~r~i~eva~~~l~~G~iVI~d  130 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITS  130 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCccccCChhhhHHHHHHHHHHHHHHHhCCCEEEEe
Confidence            56899999999999999999999986   54  4555555421                233444455567889888888


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         330 NTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       330 ~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      ........|..+.+++++.+.++.+||+++|.+++.+|.
T Consensus       131 ~~s~~~~~r~~~r~ll~~~g~p~~vV~Ldap~Evl~~Rl  169 (630)
T 1x6v_B          131 FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRD  169 (630)
T ss_dssp             CCCCCHHHHHHHHHHHHTTTCCEEEEEEECCHHHHHHHC
T ss_pred             CchhhHHHHHHHHHHHHhCCCCeEEEEEECCHHHHHHHh
Confidence            776667788999999888888999999999999999995

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=99.06  E-value=8.4e-10  Score=99.30  Aligned_cols=96  Identities=17%  Similarity=0.185  Sum_probs=69.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh-H----------------------H-HHHHHHHHHHh---CCCc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS-W----------------------Q-KCVSVMKAALD---SGLS  325 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~-~----------------------~-~~~~~~~~~l~---~g~~  325 (369)
                      ..|+|.|+|||||||+++.|++.+++.+++.|++-. .                      + ...+.+...+.   .+..
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~t~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~   85 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKNGTKIGLEAKSIIESGNFVGDEIVLGLVKEKFDLGVCVNG   85 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTC--CCHHHHHHHHHTCCCCHHHHHHHHHHHHHTTTTTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHcCCHHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCC
Confidence            578999999999999999999999999999876511 0                      0 11223333343   3778


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCC-eEEEEEEeCCHHHHHHHc
Q psy4598         326 VVVDNTNPDKESRHRYIEAAKQHGV-RCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       326 vIiD~tn~~~~~r~~~~~la~~~~~-~v~~v~l~~~~e~~~~Rn  368 (369)
                      ||+|+...+......+.+++...+. +..+|++++|.+++.+|-
T Consensus        86 ~i~dg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~Rl  129 (217)
T 3be4_A           86 FVLDGFPRTIPQAEGLAKILSEIGDSLTSVIYFEIDDSEIIERI  129 (217)
T ss_dssp             EEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHH
Confidence            9999876666556655555555553 447999999999999883

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=99.05  E-value=8.9e-10  Score=101.16  Aligned_cols=97  Identities=16%  Similarity=0.205  Sum_probs=73.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh-----------------------HHHHHHHHHHHHhC---C
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS-----------------------WQKCVSVMKAALDS---G  323 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~-----------------------~~~~~~~~~~~l~~---g  323 (369)
                      .|.+|+|+|+|||||||+++.|++.+++.+++.|++ +.                       .......+...+..   +
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~~~  107 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKTELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQCK  107 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSSHHHHHHHHHHHTTCCCCHHHHHHHHHHHTTSGGGS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccchHHHHHHHHHhcCCCCcHHHHHHHHHHHHhccccc
Confidence            467999999999999999999999999999998765 11                       11122333444433   6


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHHHhcCCe-EEEEEEeCCHHHHHHH
Q psy4598         324 LSVVVDNTNPDKESRHRYIEAAKQHGVR-CIAVHMNISKEHAKHN  367 (369)
Q Consensus       324 ~~vIiD~tn~~~~~r~~~~~la~~~~~~-v~~v~l~~~~e~~~~R  367 (369)
                      ..+|+|...........+.+++...+.. -.++++++|.+++.+|
T Consensus       108 ~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~R  152 (243)
T 3tlx_A          108 KGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNR  152 (243)
T ss_dssp             SEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHH
T ss_pred             CCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHH
Confidence            7899999777777777777766666554 3789999999999988

>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; protein-peptide complex, HAD superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A

Probab=99.05  E-value=8e-11  Score=103.60  Aligned_cols=122  Identities=13%  Similarity=0.167  Sum_probs=89.3

Q ss_pred             CCceEEEEecCCceeecCCCCCCCCC-----------ccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHH
Q psy4598          23 NSAKIASFDLDGTLITTKSGKVFPVD-----------THDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRD   91 (369)
Q Consensus        23 ~~~k~~~fDlDgTLi~~~sg~~~~~~-----------~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~   91 (369)
                      .+.+.+.+|||+||+.+........+           ..-+..+.||+.+.|++|++. |.++|+||..           
T Consensus        13 ~~k~~LVLDLD~TLvhs~~~~~~~~d~~~~~~~~~~~~~~~v~~rPg~~efL~~l~~~-~~i~I~T~~~-----------   80 (181)
T 2ght_A           13 SDKICVVINLDETLVHSSFKPVNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGEL-FECVLFTASL-----------   80 (181)
T ss_dssp             TTSCEEEECCBTTTEEEESSCCSSCSEEEEEEETTEEEEEEEEECTTHHHHHHHHHHH-SEEEEECSSC-----------
T ss_pred             CCCeEEEECCCCCeECCcccCCCCccceeeeeeCCeeEEEEEEeCCCHHHHHHHHHhC-CCEEEEcCCC-----------
Confidence            45789999999999987531110000           001234699999999999998 9999999953           


Q ss_pred             HHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCccc
Q psy4598          92 FQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTD  169 (369)
Q Consensus        92 ~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D  169 (369)
                       +..++.+++.++.  .|...++.+.+...|   +.+...++.+    +.++++++||||+.                .+
T Consensus        81 -~~~a~~vl~~ld~~~~f~~~~~rd~~~~~k---~~~~k~L~~L----g~~~~~~vivdDs~----------------~~  136 (181)
T 2ght_A           81 -AKYADPVADLLDKWGAFRARLFRESCVFHR---GNYVKDLSRL----GRDLRRVLILDNSP----------------AS  136 (181)
T ss_dssp             -HHHHHHHHHHHCTTCCEEEEECGGGSEEET---TEEECCGGGT----CSCGGGEEEECSCG----------------GG
T ss_pred             -HHHHHHHHHHHCCCCcEEEEEeccCceecC---CcEeccHHHh----CCCcceEEEEeCCH----------------HH
Confidence             3455667777776  377777766655443   5666666664    78999999999999                79


Q ss_pred             HHHHHhCCCCc
Q psy4598         170 HLFAFNLNLAF  180 (369)
Q Consensus       170 ~~~A~n~Gi~f  180 (369)
                      +.++.++||..
T Consensus       137 ~~~~~~ngi~i  147 (181)
T 2ght_A          137 YVFHPDNAVPV  147 (181)
T ss_dssp             GTTCTTSBCCC
T ss_pred             hccCcCCEeEe
Confidence            99999999983

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=99.03  E-value=1.1e-09  Score=99.02  Aligned_cols=95  Identities=16%  Similarity=0.269  Sum_probs=71.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh-----------------------HHHHHHHHHHHHhC--CCcEE
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS-----------------------WQKCVSVMKAALDS--GLSVV  327 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~-----------------------~~~~~~~~~~~l~~--g~~vI  327 (369)
                      +|+|.|+|||||||+++.|++.+++.+++.|++ +.                       .+.....+...+..  |..||
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~g~~vI   81 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGTELGKKAKEFIDRGDLVPDDITIPMVLETLESKGKDGWL   81 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHCTTCEE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCCHHHHHHHHHHHcCCcCcHHHHHHHHHHHHhcccCCeEE
Confidence            689999999999999999999999999998765 21                       01123345555666  88999


Q ss_pred             EeCCCCCHHHHHHHHHHHHhcCC-eEEEEEEeCCHHHHHHHc
Q psy4598         328 VDNTNPDKESRHRYIEAAKQHGV-RCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       328 iD~tn~~~~~r~~~~~la~~~~~-~v~~v~l~~~~e~~~~Rn  368 (369)
                      +|+..........+.+.+...+. +-.++++++|.+++.+|-
T Consensus        82 lDg~~~~~~~~~~l~~~~~~~~~~~d~vi~l~~~~e~~~~Rl  123 (223)
T 2xb4_A           82 LDGFPRNTVQAQKLFEALQEKGMKINFVIEILLPREVAKNRI  123 (223)
T ss_dssp             EESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHH
T ss_pred             EeCCcCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHH
Confidence            99866666666666665555553 447899999999999883

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=99.02  E-value=1.9e-09  Score=92.42  Aligned_cols=92  Identities=14%  Similarity=0.159  Sum_probs=65.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh----HHHHHHHHHHHHhCCCcEEEeCCC---------------C
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS----WQKCVSVMKAALDSGLSVVVDNTN---------------P  333 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~----~~~~~~~~~~~l~~g~~vIiD~tn---------------~  333 (369)
                      ++|+|+|+|||||||+++.|++.+++.+++.|.+..    .....+ ....+..+..||.|...               .
T Consensus         2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~~~~~~~-~~~~l~~~~~vi~dr~~~~~~v~~~~~~~~~~~   80 (173)
T 3kb2_A            2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSGNEKLFE-HFNKLADEDNVIIDRFVYSNLVYAKKFKDYSIL   80 (173)
T ss_dssp             CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHHTTCHHHHHH-HHHHHTTCCSEEEESCHHHHHHHTTTBTTCCCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccchhHHHHHHH-HHHHHHhCCCeEEeeeecchHHHHHHHHHhhHh
Confidence            479999999999999999999999999999998753    122222 33456778889988422               2


Q ss_pred             CHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         334 DKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       334 ~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      ....+..+..   ....+..+|++++|.+++.+|.
T Consensus        81 ~~~~~~~l~~---~~~~~~~~i~l~~~~e~~~~R~  112 (173)
T 3kb2_A           81 TERQLRFIED---KIKAKAKVVYLHADPSVIKKRL  112 (173)
T ss_dssp             CHHHHHHHHH---HHTTTEEEEEEECCHHHHHHHH
T ss_pred             hHHHHHHHhc---cCCCCCEEEEEeCCHHHHHHHH
Confidence            2233332222   1233556999999999999884

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=99.01  E-value=1.4e-09  Score=96.29  Aligned_cols=97  Identities=9%  Similarity=0.171  Sum_probs=68.4

Q ss_pred             ccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh-----------------------------HHHHHHHHHHH
Q psy4598         269 AALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS-----------------------------WQKCVSVMKAA  319 (369)
Q Consensus       269 ~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~-----------------------------~~~~~~~~~~~  319 (369)
                      +..+.+|+|+|+|||||||+++.|++.+++.+++.|.+-.                             +..+.+.+...
T Consensus        12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l~~~i~~~   91 (203)
T 1ukz_A           12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAISDN   91 (203)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHhh
Confidence            4456899999999999999999999999999999886411                             01112233445


Q ss_pred             HhCC-CcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         320 LDSG-LSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       320 l~~g-~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      +..| ..+|+|+.....+....+...+   ..+-.+|++++|.+++.+|-
T Consensus        92 l~~g~~~~i~dg~~~~~~~~~~~~~~~---~~~~~~i~l~~~~e~~~~Rl  138 (203)
T 1ukz_A           92 VKANKHKFLIDGFPRKMDQAISFERDI---VESKFILFFDCPEDIMLERL  138 (203)
T ss_dssp             HHTTCCEEEEETCCCSHHHHHHHHHHT---CCCSEEEEEECCHHHHHHHH
T ss_pred             hccCCCeEEEeCCCCCHHHHHHHHHhc---CCCCEEEEEECCHHHHHHHH
Confidence            5666 5799998766555544433322   12336899999999998873

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=99.01  E-value=5.8e-10  Score=97.22  Aligned_cols=90  Identities=19%  Similarity=0.219  Sum_probs=61.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh------------------HHHHHHHHHHHHhCCCcEEEeCC--
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS------------------WQKCVSVMKAALDSGLSVVVDNT--  331 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~------------------~~~~~~~~~~~l~~g~~vIiD~t--  331 (369)
                      ++.|+|+|+|||||||+++.|++.+++.+++.|.+..                  |+.....+...+.....+|++..  
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~gg~   84 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEKRTGADIAWIFEMEGEAGFRRREREMIEALCKLDNIILATGGG   84 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCEEECCTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHcCCChhhHHHHhCHHHHHHHHHHHHHHHHhcCCcEEecCCc
Confidence            5689999999999999999999999999999998731                  12222233333333345555553  


Q ss_pred             -CCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         332 -NPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       332 -n~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                       ......+..+    ++.+   .+||+++|.+++.+|.
T Consensus        85 ~~~~~~~~~~l----~~~~---~vi~L~~~~e~l~~Rl  115 (185)
T 3trf_A           85 VVLDEKNRQQI----SETG---VVIYLTASIDTQLKRI  115 (185)
T ss_dssp             GGGSHHHHHHH----HHHE---EEEEEECCHHHHHHHH
T ss_pred             eecCHHHHHHH----HhCC---cEEEEECCHHHHHHHH
Confidence             2344444433    3322   6899999999999885

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=99.01  E-value=5.4e-10  Score=99.12  Aligned_cols=93  Identities=13%  Similarity=0.126  Sum_probs=64.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh------------------HHHHHHHHHHHHhCCCcEEEeCCCC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS------------------WQKCVSVMKAALDSGLSVVVDNTNP  333 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~------------------~~~~~~~~~~~l~~g~~vIiD~tn~  333 (369)
                      +++|+|+|+|||||||+++.|++.+++.+++.|.+..                  ++.....+...+..+..+|++..+.
T Consensus        25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~~~g~~i~~~~~~~~~~~~~~~e~~~l~~l~~~~~~vi~~ggg  104 (199)
T 3vaa_A           25 MVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEERFHKTVGELFTERGEAGFRELERNMLHEVAEFENVVISTGGG  104 (199)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEEEECCTT
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHHHhCCcHHHHHHhcChHHHHHHHHHHHHHHhhcCCcEEECCCc
Confidence            4689999999999999999999999999999998621                  1222333334445567888886554


Q ss_pred             CHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         334 DKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       334 ~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      ....+..+..+ .+   ...+||+++|.+++.+|-
T Consensus       105 ~~~~~~~~~~l-~~---~~~vi~L~~~~e~l~~Rl  135 (199)
T 3vaa_A          105 APCFYDNMEFM-NR---TGKTVFLNVHPDVLFRRL  135 (199)
T ss_dssp             GGGSTTHHHHH-HH---HSEEEEEECCHHHHHHHH
T ss_pred             EEccHHHHHHH-Hc---CCEEEEEECCHHHHHHHH
Confidence            33222222222 22   236899999999999874

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=98.99  E-value=2.5e-09  Score=110.04  Aligned_cols=98  Identities=23%  Similarity=0.283  Sum_probs=79.7

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccCC------cEEEeCCcchh----------------HHHHHHHHHHHHhCCCcEE
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPLN------YTTVNRDTLGS----------------WQKCVSVMKAALDSGLSVV  327 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~~------~~~i~~D~~~~----------------~~~~~~~~~~~l~~g~~vI  327 (369)
                      ..+.+|+|+|+|||||||+|+.|++.++      +.+++.|.++.                ++.+...+...++.|..||
T Consensus       394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~~~~f~~~er~~~i~ri~~v~~~~~~~g~~VI  473 (573)
T 1m8p_A          394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAAVI  473 (573)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhccccCCChhHHHHHHHHHHHHHHHHHhCCCEEE
Confidence            3457999999999999999999999854      57888887641                1223345667778899999


Q ss_pred             EeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         328 VDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       328 iD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      +|..+..+..|..+++++++.+ .+.+||+++|.++|.+|.
T Consensus       474 ~~~is~~~~~R~~~r~l~~~~g-~~~~V~Lda~~ev~~~R~  513 (573)
T 1m8p_A          474 AAPIAPYEESRKFARDAVSQAG-SFFLVHVATPLEHCEQSD  513 (573)
T ss_dssp             EECCCCCHHHHHHHHHHHHTTS-EEEEEEECCCHHHHHHHC
T ss_pred             EEcCCCcHHHHHHHHHHHHhcC-CeEEEEEeCCHHHHHHHh
Confidence            9988888889999988887655 688999999999999985

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=98.97  E-value=1.7e-09  Score=100.01  Aligned_cols=91  Identities=11%  Similarity=0.122  Sum_probs=65.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh---------------------------------H--HHHHHHHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS---------------------------------W--QKCVSVMK  317 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~---------------------------------~--~~~~~~~~  317 (369)
                      ++|+|+|+|||||||+|+.|++.+++.+++.|.+..                                 +  ..+.+.+.
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~~   81 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRLI   81 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHHH
Confidence            589999999999999999999999999999987520                                 1  11222222


Q ss_pred             ---HHHhCCCcEEEeCCCCCHHHHHHHHHHHHh----cCCeEEEEEEeCCH-HHHHHHc
Q psy4598         318 ---AALDSGLSVVVDNTNPDKESRHRYIEAAKQ----HGVRCIAVHMNISK-EHAKHNI  368 (369)
Q Consensus       318 ---~~l~~g~~vIiD~tn~~~~~r~~~~~la~~----~~~~v~~v~l~~~~-e~~~~Rn  368 (369)
                         +.++.|..+|++....     ..+..+++.    .++.+.++|+++|. +++.+|.
T Consensus        82 ~~i~~~~~g~~vIl~gg~~-----~~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl  135 (253)
T 2ze6_A           82 FEVDWRKSEEGLILEGGSI-----SLLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRA  135 (253)
T ss_dssp             HHHHTTTTSSEEEEEECCH-----HHHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHH
T ss_pred             HHHHHHhCCCCeEEeccHH-----HHHHHHHhcccccccCceEEEEecchhHHHHHHHH
Confidence               3346788888876542     233445555    67888999999997 8888774

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=98.96  E-value=2.3e-09  Score=96.94  Aligned_cols=96  Identities=15%  Similarity=0.346  Sum_probs=67.4

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCc-chh--------------H---------HHHHHHHHHHH----h
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDT-LGS--------------W---------QKCVSVMKAAL----D  321 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~-~~~--------------~---------~~~~~~~~~~l----~  321 (369)
                      ..+++|+|.|||||||+|.|+.|++.+++.+|+..+ ++.              +         +.....+.+.+    .
T Consensus        27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t~lg~~~~~~~~~G~lVpde~~~~lv~~~l~~~~~  106 (217)
T 3umf_A           27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGSPKGKELKAMMERGELVPLEVVLALLKEAMIKLVD  106 (217)
T ss_dssp             TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHTT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCCchHHHHHHHHhcCCCCCHHHHHHHHHHHHhhccc
Confidence            456899999999999999999999999999999754 331              0         11122222322    3


Q ss_pred             CCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         322 SGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       322 ~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      ....+|+|+.-.+..+...+.+   ...-...++++++|.+++.+|-
T Consensus       107 ~~~g~ilDGfPRt~~Qa~~l~~---~~~~~~~vi~l~v~~e~~~~Rl  150 (217)
T 3umf_A          107 KNCHFLIDGYPRELDQGIKFEK---EVCPCLCVINFDVSEEVMRKRL  150 (217)
T ss_dssp             TCSEEEEETBCSSHHHHHHHHH---HTCCCSEEEEEECCHHHHHHHH
T ss_pred             cccCcccccCCCcHHHHHHHHH---hCCccCEEEeccCCHHHHHHHH
Confidence            4557999998766655544433   2333446899999999999883

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=98.94  E-value=7.8e-09  Score=89.75  Aligned_cols=97  Identities=15%  Similarity=0.235  Sum_probs=65.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC---CcE--EEeCCcchh----------------HHHHHHHHHHHHhCCCcEEEeC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL---NYT--TVNRDTLGS----------------WQKCVSVMKAALDSGLSVVVDN  330 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~---~~~--~i~~D~~~~----------------~~~~~~~~~~~l~~g~~vIiD~  330 (369)
                      ..+|+|+|++||||||+++.|++.+   ++.  .++.|.++.                ++++...+....+.+..++.+.
T Consensus         5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (179)
T 2pez_A            5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSF   84 (179)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhhccccccccHHHHHHHHHHHHHHHHHCCCEEEEec
Confidence            4689999999999999999999875   644  446554420                1222222211225564444454


Q ss_pred             CCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         331 TNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       331 tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      ..+....+..+..+++..+.+..+|++++|.+++.+|.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~  122 (179)
T 2pez_A           85 ISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRD  122 (179)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCCEEEEEEECCHHHHHHHC
T ss_pred             CCcchHHHHHHHHHhhccCCCeEEEEEeCCHHHHHHHH
Confidence            44445556666677677788889999999999999984

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=98.94  E-value=2.3e-09  Score=92.17  Aligned_cols=90  Identities=18%  Similarity=0.239  Sum_probs=60.9

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh------------------HHHHHHHHHHHHhCCCcEEEeCCC
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS------------------WQKCVSVMKAALDSGLSVVVDNTN  332 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~------------------~~~~~~~~~~~l~~g~~vIiD~tn  332 (369)
                      |+.+|+|+|+|||||||+++.|++.+++.+++.|.+..                  ++.....+...+. +..+||+...
T Consensus         1 m~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~vi~~g~   79 (173)
T 1e6c_A            1 MTEPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRESEALQAVA-TPNRVVATGG   79 (173)
T ss_dssp             CCCCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHC-CSSEEEECCT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHHhCCCHHHHHHHcCHHHHHHHHHHHHHHhh-cCCeEEECCC
Confidence            34689999999999999999999999999999987621                  1111112222344 4567777542


Q ss_pred             ---CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         333 ---PDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       333 ---~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                         .....+..+.    ..   ..+|++++|.+++.+|.
T Consensus        80 ~~~~~~~~~~~l~----~~---~~~i~l~~~~e~~~~R~  111 (173)
T 1e6c_A           80 GMVLLEQNRQFMR----AH---GTVVYLFAPAEELALRL  111 (173)
T ss_dssp             TGGGSHHHHHHHH----HH---SEEEEEECCHHHHHHHH
T ss_pred             cEEeCHHHHHHHH----cC---CeEEEEECCHHHHHHHH
Confidence               2344444332    22   26899999999998884

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.94  E-value=5.8e-09  Score=90.43  Aligned_cols=95  Identities=28%  Similarity=0.368  Sum_probs=76.8

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch---------------hHHHHHHHHHHHHhCCCcEEEeCCCCCH
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG---------------SWQKCVSVMKAALDSGLSVVVDNTNPDK  335 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~---------------~~~~~~~~~~~~l~~g~~vIiD~tn~~~  335 (369)
                      ...++.|+|+|||||||+++.+..  +...++.|.++               .++.+...+...+..|..+++|+++...
T Consensus         8 ~gei~~l~G~nGsGKSTl~~~~~~--~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~s   85 (171)
T 4gp7_A            8 ELSLVVLIGSSGSGKSTFAKKHFK--PTEVISSDFCRGLMSDDENDQTVTGAAFDVLHYIVSKRLQLGKLTVVDATNVQE   85 (171)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHSC--GGGEEEHHHHHHHHCSSTTCGGGHHHHHHHHHHHHHHHHHTTCCEEEESCCCSH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHcc--CCeEEccHHHHHHhcCcccchhhHHHHHHHHHHHHHHHHhCCCeEEEECCCCCH
Confidence            457899999999999999998653  34456666542               1344455566677889999999999999


Q ss_pred             HHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         336 ESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       336 ~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      ..++++..+|+.......++++|-|...+-.+
T Consensus        86 ~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~  117 (171)
T 4gp7_A           86 SARKPLIEMAKDYHCFPVAVVFNLPEKVCQER  117 (171)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEEECCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHH
Confidence            99999999999999999999999999877655

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=98.94  E-value=3.1e-09  Score=106.76  Aligned_cols=98  Identities=17%  Similarity=0.246  Sum_probs=70.0

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchh-------------------HH---H----HHHHHHH
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGS-------------------WQ---K----CVSVMKA  318 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~-------------------~~---~----~~~~~~~  318 (369)
                      .++.+|+|+|+|||||||+++.|++.+     +...++.|.++.                   ++   .    +...+..
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~  116 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK  116 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            356799999999999999999999875     344544333310                   11   1    1112244


Q ss_pred             HH--hCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         319 AL--DSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       319 ~l--~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      .+  ..|..+|+|++|...+.|+.|++.+++.++.+.++.+.|+...+..+
T Consensus       117 ~l~~~~G~~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~~~~~~~~~i~~  167 (469)
T 1bif_A          117 FLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAA  167 (469)
T ss_dssp             HHHTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHH
T ss_pred             HHHhCCCCEEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEEEECCCHHHHHH
Confidence            44  45779999999999999999999999999888788877775444443

>4ap9_A Phosphoserine phosphatase; hydrolase, haloacid dehalogenase superfamily, NDSB; HET: 1PS; 1.78A {Thermococcus onnurineus} PDB: 4b6j_A

Probab=98.93  E-value=2.1e-10  Score=99.78  Aligned_cols=91  Identities=10%  Similarity=0.020  Sum_probs=64.3

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCC-CCCCCCchhHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQY-DRYRKPVPGMWEYLSQ  131 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~-~~~rKP~~gm~~~~~~  131 (369)
                      ++|++.+.|+.|++.|++++|+||....            .+..+ +.+|+.  +..+.+.+. ....+|.+.....+++
T Consensus        80 ~~~~~~~~l~~l~~~g~~~~i~t~~~~~------------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~  146 (201)
T 4ap9_A           80 VSPEARELVETLREKGFKVVLISGSFEE------------VLEPF-KELGDEFMANRAIFEDGKFQGIRLRFRDKGEFLK  146 (201)
T ss_dssp             CCHHHHHHHHHHHHTTCEEEEEEEEETT------------TSGGG-TTTSSEEEEEEEEEETTEEEEEECCSSCHHHHHG
T ss_pred             CChhHHHHHHHHHHCCCeEEEEeCCcHH------------HHHHH-HHcCchhheeeEEeeCCceECCcCCccCHHHHHH
Confidence            5799999999999999999999995421            12233 556653  333333221 1114566655556665


Q ss_pred             HhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc
Q psy4598         132 EKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF  180 (369)
Q Consensus       132 ~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f  180 (369)
                      .      +++++++||||+.                +|+.+|+++|+.+
T Consensus       147 ~------l~~~~~i~iGD~~----------------~Di~~~~~ag~~v  173 (201)
T 4ap9_A          147 R------FRDGFILAMGDGY----------------ADAKMFERADMGI  173 (201)
T ss_dssp             G------GTTSCEEEEECTT----------------CCHHHHHHCSEEE
T ss_pred             h------cCcCcEEEEeCCH----------------HHHHHHHhCCceE
Confidence            4      3889999999999                8999999999985

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=98.92  E-value=6.7e-09  Score=94.36  Aligned_cols=96  Identities=8%  Similarity=0.144  Sum_probs=68.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh-------H----------------HHHHHHHHHHHh---CCC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS-------W----------------QKCVSVMKAALD---SGL  324 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~-------~----------------~~~~~~~~~~l~---~g~  324 (369)
                      +..|+|.|+|||||||+++.|++.+++.+++.|++ +.       .                +.....+...+.   .+.
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~   95 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPCKN   95 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGGTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCChhHHHHHHHHHCCCcCCHHHHHHHHHHHHhcccccC
Confidence            46899999999999999999999999999999764 21       0                001122223332   245


Q ss_pred             cEEEeCCCCCHHHHHHHHHHHHhcC-CeEEEEEEeCCHHHHHHH
Q psy4598         325 SVVVDNTNPDKESRHRYIEAAKQHG-VRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       325 ~vIiD~tn~~~~~r~~~~~la~~~~-~~v~~v~l~~~~e~~~~R  367 (369)
                      .+|+|....+......+.+++...+ .+-.+|++++|.+++.+|
T Consensus        96 g~ildg~~~~~~~~~~l~~~l~~~~~~~d~vi~L~~~~e~~~~R  139 (233)
T 1ak2_A           96 GFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRR  139 (233)
T ss_dssp             CEEEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHH
T ss_pred             cEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence            7999986656666666655555443 345799999999999988

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.91  E-value=1.2e-08  Score=89.35  Aligned_cols=96  Identities=16%  Similarity=0.219  Sum_probs=69.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCC-cEEEeCCcchh-------------------HHHHHHHHHHHHhCCCcEEEeCC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLN-YTTVNRDTLGS-------------------WQKCVSVMKAALDSGLSVVVDNT  331 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~-~~~i~~D~~~~-------------------~~~~~~~~~~~l~~g~~vIiD~t  331 (369)
                      ..+|+|+|+|||||||+++.|+...+ .++++.|.+..                   ++.+...+...+..+..+|+|..
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ild~~   81 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQNDVVLDYI   81 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEEEEESC
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHHHHHHHhcCCcEEEeec
Confidence            46899999999999999999998765 47888776521                   12233334455567778999986


Q ss_pred             CCCHHHHHHHHHHHH--hcCCeEEEEEEeCCHHHHHHHc
Q psy4598         332 NPDKESRHRYIEAAK--QHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       332 n~~~~~r~~~~~la~--~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      . ....+..+.++++  ..+..+.++++.+|.+++.+|.
T Consensus        82 ~-~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~  119 (189)
T 2bdt_A           82 A-FPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRD  119 (189)
T ss_dssp             C-CHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHT
T ss_pred             c-CHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHH
Confidence            4 5666666666644  3344677899999999999885

>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A*

Probab=98.91  E-value=3.2e-10  Score=104.38  Aligned_cols=84  Identities=10%  Similarity=0.088  Sum_probs=58.8

Q ss_pred             cccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHH
Q psy4598          54 LLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQ  131 (369)
Q Consensus        54 ~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~  131 (369)
                      .++|++.+.|+.|++.|++++|+||.+            ...+..+++.+|+.  |..+++.+       +........ 
T Consensus       144 ~~~~~~~~~l~~l~~~g~~~~i~T~~~------------~~~~~~~~~~~gl~~~f~~~~~~~-------k~~~~k~~~-  203 (280)
T 3skx_A          144 RIRPESREAISKLKAIGIKCMMLTGDN------------RFVAKWVAEELGLDDYFAEVLPHE-------KAEKVKEVQ-  203 (280)
T ss_dssp             EECTTHHHHHHHHHHTTCEEEEECSSC------------HHHHHHHHHHHTCSEEECSCCGGG-------HHHHHHHHH-
T ss_pred             CCCHhHHHHHHHHHHCCCEEEEEeCCC------------HHHHHHHHHHcCChhHhHhcCHHH-------HHHHHHHHH-
Confidence            367999999999999999999999943            23455677888874  33222221       122222222 


Q ss_pred             HhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         132 EKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       132 ~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                              +.-+++||||+.                .|+.+|.++|+.+.
T Consensus       204 --------~~~~~~~vGD~~----------------nDi~~~~~Ag~~va  229 (280)
T 3skx_A          204 --------QKYVTAMVGDGV----------------NDAPALAQADVGIA  229 (280)
T ss_dssp             --------TTSCEEEEECTT----------------TTHHHHHHSSEEEE
T ss_pred             --------hcCCEEEEeCCc----------------hhHHHHHhCCceEE
Confidence                    223789999998                89999999998653

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=98.89  E-value=6.7e-09  Score=93.84  Aligned_cols=93  Identities=15%  Similarity=0.139  Sum_probs=64.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch-hH-----------------------HHHHHHHHHHHh--CCCc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG-SW-----------------------QKCVSVMKAALD--SGLS  325 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~-~~-----------------------~~~~~~~~~~l~--~g~~  325 (369)
                      +.+|+|+|+|||||||+++.|++.+++.+++.|++- ..                       ......+.+.+.  .+..
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~   86 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNMLRGTEIGVLAKAFIDQGKLIPDDVMTRLALHELKNLTQYS   86 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTCTTSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHHHhcccCCC
Confidence            468999999999999999999999999999987651 10                       011122333444  3678


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         326 VVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       326 vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      +|+|+...+......+..+   .. .-.+|++++|.+++.+|.
T Consensus        87 ~vid~~~~~~~~~~~l~~~---~~-~~~vi~L~~~~~~~~~R~  125 (227)
T 1zd8_A           87 WLLDGFPRTLPQAEALDRA---YQ-IDTVINLNVPFEVIKQRL  125 (227)
T ss_dssp             EEEESCCCSHHHHHHHHTT---SC-CCEEEEEECCHHHHHHHH
T ss_pred             EEEeCCCCCHHHHHHHHHh---cC-CCEEEEEECCHHHHHHHH
Confidence            9999977654443322211   22 236899999999999884

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=98.86  E-value=2.7e-09  Score=92.92  Aligned_cols=90  Identities=20%  Similarity=0.239  Sum_probs=58.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh----------H--------HHHH-HHHHHHHhCCCcEEEeCC
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS----------W--------QKCV-SVMKAALDSGLSVVVDNT  331 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~----------~--------~~~~-~~~~~~l~~g~~vIiD~t  331 (369)
                      |+++|+|+|+|||||||+|+.|++.+++.+++.|.+..          +        +... ..+...+.....||.++.
T Consensus         1 M~~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~vi~~g~   80 (184)
T 2iyv_A            1 MAPKAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVLSLGG   80 (184)
T ss_dssp             -CCSEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEEECCT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHcCCCHHHHHHHhChHHHHHHHHHHHHHHHhcCCeEEecCC
Confidence            34579999999999999999999999999999998631          1        1111 122333333434443332


Q ss_pred             C--CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         332 N--PDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       332 n--~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      +  ..+..|..+    + .+   .+|++++|.+++.+|.
T Consensus        81 ~~v~~~~~~~~l----~-~~---~vV~L~~~~e~~~~Rl  111 (184)
T 2iyv_A           81 GAVTSPGVRAAL----A-GH---TVVYLEISAAEGVRRT  111 (184)
T ss_dssp             TGGGSHHHHHHH----T-TS---CEEEEECCHHHHHHHT
T ss_pred             cEEcCHHHHHHH----c-CC---eEEEEeCCHHHHHHHH
Confidence            2  233344332    2 23   5899999999999984

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=98.86  E-value=3.4e-09  Score=108.40  Aligned_cols=96  Identities=15%  Similarity=0.162  Sum_probs=77.1

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCC-----cEEEeCCcchh----------------HHHHHHHHHHHHhCCCcEEEe
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLN-----YTTVNRDTLGS----------------WQKCVSVMKAALDSGLSVVVD  329 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~-----~~~i~~D~~~~----------------~~~~~~~~~~~l~~g~~vIiD  329 (369)
                      .+.+|+++|+|||||||+++.|++.++     +.+++.|.++.                ++.+...+...++.|..||+|
T Consensus       371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~~~f~~~er~~~l~~i~~~~~~~l~~G~~VI~d  450 (546)
T 2gks_A          371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRGLGFSKEDRITNILRVGFVASEIVKHNGVVICA  450 (546)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcccccccHHHHHHHHHHHHHHHHHHHhCCCEEEEE
Confidence            457899999999999999999998764     58889887641                123344566677889999999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         330 NTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       330 ~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      .+++.+..|..+.+++++  ..+.+|++++|.+++.+|.
T Consensus       451 ~~~~~~~~r~~~~~~l~~--~d~~vV~L~~~~e~~~~Rl  487 (546)
T 2gks_A          451 LVSPYRSARNQVRNMMEE--GKFIEVFVDAPVEVCEERD  487 (546)
T ss_dssp             CCCCCHHHHHHHHTTSCT--TCEEEEEEECCGGGHHHHC
T ss_pred             cCCCCHHHHHHHHHHhhc--CCEEEEEEeCCHHHHHHHh
Confidence            999888888887776654  3478999999999999996

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=98.84  E-value=4.3e-09  Score=90.10  Aligned_cols=88  Identities=22%  Similarity=0.183  Sum_probs=60.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh------------------HHHHHHHHHHHHhCCCcEEEeCC---C
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS------------------WQKCVSVMKAALDSGLSVVVDNT---N  332 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~------------------~~~~~~~~~~~l~~g~~vIiD~t---n  332 (369)
                      .|+|+|+|||||||+++.|++.+++.+++.|.+..                  ++.+...+...+.....+||++.   .
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~Vi~~g~~~~   81 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKREGLSIPQIFEKKGEAYFRKLEFEVLKDLSEKENVVISTGGGLG   81 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHHTSCHHHHHHHSCHHHHHHHHHHHHHHHTTSSSEEEECCHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHcCCCHHHHHHHhChHHHHHHHHHHHHHHhccCCeEEECCCCEe
Confidence            58999999999999999999999999999988621                  11222333334443446666632   2


Q ss_pred             CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         333 PDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       333 ~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      .....+..+    +..   -.+|++++|.+++.+|.
T Consensus        82 ~~~~~~~~l----~~~---~~~i~l~~~~e~~~~R~  110 (168)
T 2pt5_A           82 ANEEALNFM----KSR---GTTVFIDIPFEVFLERC  110 (168)
T ss_dssp             TCHHHHHHH----HTT---SEEEEEECCHHHHHHHC
T ss_pred             CCHHHHHHH----HcC---CEEEEEECCHHHHHHHH
Confidence            344444333    222   26899999999999984

>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282, MCSG, PSI-2, haloacid dehalogenase-like HY structural genomics; 2.45A {Bacillus subtilis subsp}

Probab=98.84  E-value=1.5e-09  Score=101.40  Aligned_cols=107  Identities=14%  Similarity=0.167  Sum_probs=75.6

Q ss_pred             ccccHHHHHHHHHHC-CcEEEEEecCCCcCCC------CCCH---HHHHHHHHHHHHHcCCCeEEE------------Ee
Q psy4598          55 LFSNIESVLKQYLDD-GYKLVIFTNQGAIGRK------KMST---RDFQAKAEKIIKSLNVPVQMF------------VA  112 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~-G~~i~i~TNq~gi~~~------~~~~---~~~~~~i~~~l~~l~i~~~~~------------~~  112 (369)
                      .++++.+.|+.|++. |+++.+.|+...-...      ....   ......+..+++.+|+...+.            ++
T Consensus       123 ~~~~v~e~l~~l~~~~g~~l~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  202 (289)
T 3gyg_A          123 SKEKVEKLVKQLHENHNILLNPQTQLGKSRYKHNFYYQEQDEINDKKNLLAIEKICEEYGVSVNINRCNPLAGDPEDSYD  202 (289)
T ss_dssp             CHHHHHHHHHHHHHHSSCCCEEGGGTCGGGTTCCEEEECCCHHHHHHHHHHHHHHHHHHTEEEEEEECCGGGTCCTTEEE
T ss_pred             CHHHHHHHHHHHHhhhCceeeecccccccceEEEEEEeccccccchHHHHHHHHHHHHcCCCEEEEEccccccCCCCceE
Confidence            467899999999987 9999999974211000      0000   112345667778888643222            22


Q ss_pred             cCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         113 TQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       113 ~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      .+....++|++..+.++++++    ++++++++||||+.                +|+.++.++|+.+.
T Consensus       203 ~~~~~~~~~k~~~~~~~~~~~----~~~~~~~~~~GDs~----------------~D~~~~~~ag~~~~  251 (289)
T 3gyg_A          203 VDFIPIGTGKNEIVTFMLEKY----NLNTERAIAFGDSG----------------NDVRMLQTVGNGYL  251 (289)
T ss_dssp             EEEEESCCSHHHHHHHHHHHH----TCCGGGEEEEECSG----------------GGHHHHTTSSEEEE
T ss_pred             EEEEeCCCCHHHHHHHHHHHc----CCChhhEEEEcCCH----------------HHHHHHHhCCcEEE
Confidence            223346789999999999986    78999999999999                89999999998763

>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10

Probab=98.82  E-value=2e-08  Score=90.87  Aligned_cols=123  Identities=16%  Similarity=0.119  Sum_probs=83.8

Q ss_pred             ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCC-----------cCC------C--
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGA-----------IGR------K--   85 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~g-----------i~~------~--   85 (369)
                      .|+++||+||||+.+..            .+.+...++|++|+++|++++++|..+-           +..      |  
T Consensus         3 ~kli~~DlDGTLl~~~~------------~i~~~~~~al~~l~~~G~~v~i~TGR~~~~~~~~~~~l~~~~~~i~~nGa~   70 (231)
T 1wr8_A            3 IKAISIDIDGTITYPNR------------MIHEKALEAIRRAESLGIPIMLVTGNTVQFAEAASILIGTSGPVVAEDGGA   70 (231)
T ss_dssp             CCEEEEESTTTTBCTTS------------CBCHHHHHHHHHHHHTTCCEEEECSSCHHHHHHHHHHHTCCSCEEEGGGTE
T ss_pred             eeEEEEECCCCCCCCCC------------cCCHHHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHHcCCCCeEEEeCCcE
Confidence            48999999999997532            2578899999999999999999997541           100      0  


Q ss_pred             -----C----CCHHHHHHH-----------------------------------HHHHHHHcCCCeEEEEecC----CCC
Q psy4598          86 -----K----MSTRDFQAK-----------------------------------AEKIIKSLNVPVQMFVATQ----YDR  117 (369)
Q Consensus        86 -----~----~~~~~~~~~-----------------------------------i~~~l~~l~i~~~~~~~~~----~~~  117 (369)
                           .    ...+.+++.                                   +..+++.++-.|+++ +..    -..
T Consensus        71 i~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ei~~  149 (231)
T 1wr8_A           71 ISYKKKRIFLASMDEEWILWNEIRKRFPNARTSYTMPDRRAGLVIMRETINVETVREIINELNLNLVAV-DSGFAIHVKK  149 (231)
T ss_dssp             EEETTEEEESCCCSHHHHHHHHHHHHCTTCCBCTTGGGCSSCEEECTTTSCHHHHHHHHHHTTCSCEEE-ECSSCEEEEC
T ss_pred             EEeCCEEEEeccHHHHHHHHHHHHHhCCCceEEecCCCceeeEEEECCCCCHHHHHHHHHhcCCcEEEE-ecCcEEEEec
Confidence                 0    000111111                                   112222222223433 221    123


Q ss_pred             CCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc
Q psy4598         118 YRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF  180 (369)
Q Consensus       118 ~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f  180 (369)
                      .+||++.+++.+++++    ++++++++||||+.                +|+.++.++|+.+
T Consensus       150 ~~~~K~~~~~~~~~~~----~~~~~~~~~iGD~~----------------nD~~~~~~ag~~v  192 (231)
T 1wr8_A          150 PWINKGSGIEKASEFL----GIKPKEVAHVGDGE----------------NDLDAFKVVGYKV  192 (231)
T ss_dssp             TTCCHHHHHHHHHHHH----TSCGGGEEEEECSG----------------GGHHHHHHSSEEE
T ss_pred             CCCChHHHHHHHHHHc----CCCHHHEEEECCCH----------------HHHHHHHHcCCeE
Confidence            5789999999999986    68899999999998                8999999999985

>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0

Probab=98.82  E-value=1.6e-08  Score=92.92  Aligned_cols=44  Identities=9%  Similarity=0.056  Sum_probs=38.1

Q ss_pred             CCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         118 YRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       118 ~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      ..++++..++.+++++    +++++++++|||+.                +|+.++.++|+.+.
T Consensus       197 ~~~~K~~~l~~l~~~l----gi~~~~~i~~GD~~----------------NDi~m~~~ag~~va  240 (274)
T 3fzq_A          197 KDFHKGKAIKRLQERL----GVTQKETICFGDGQ----------------NDIVMFQASDVTIA  240 (274)
T ss_dssp             TTCSHHHHHHHHHHHH----TCCSTTEEEECCSG----------------GGHHHHHTCSEEEE
T ss_pred             CCCCHHHHHHHHHHHc----CCCHHHEEEECCCh----------------hHHHHHHhcCceEE
Confidence            3567788888889886    79999999999999                89999999997763

>1q92_A 5(3)-deoxyribonucleotidase; alpha-beta rossman fold, hydrolase; HET: DRM; 1.40A {Homo sapiens} SCOP: c.108.1.8 PDB: 1mh9_A* 1q91_A* 1z4m_A* 1z4i_A* 1z4j_A* 1z4l_A* 1z4k_A* 1z4p_X* 1z4q_A* 2jau_A* 2jaw_A* 3u19_A* 3u13_A 4e88_A

Probab=98.81  E-value=3.7e-10  Score=99.82  Aligned_cols=82  Identities=9%  Similarity=-0.064  Sum_probs=57.3

Q ss_pred             ccccHHHHHHHHHHC-CcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCchhHHHHHHHHh
Q psy4598          55 LFSNIESVLKQYLDD-GYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEK  133 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~-G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~  133 (369)
                      ++||+.+.|+.|+++ |++++|+||.+...    . ....++. .+....   |+                  ..+++++
T Consensus        76 ~~~g~~e~L~~L~~~~g~~~~ivT~~~~~~----~-~~~l~~~-~l~~~~---f~------------------~~~~~~l  128 (197)
T 1q92_A           76 PLPGAVEAVKEMASLQNTDVFICTSPIKMF----K-YCPYEKY-AWVEKY---FG------------------PDFLEQI  128 (197)
T ss_dssp             BCTTHHHHHHHHHHSTTEEEEEEECCCSCC----S-SHHHHHH-HHHHHH---HC------------------GGGGGGE
T ss_pred             cCcCHHHHHHHHHhcCCCeEEEEeCCccch----H-HHHHHHh-chHHHh---ch------------------HHHHHHh
Confidence            689999999999999 99999999965321    1 1111111 111100   11                  3455554


Q ss_pred             cCCccccCCccEEeeCccccccccCCCCCCCCCccc----HHHHH-hCCCCccCc
Q psy4598         134 NGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTD----HLFAF-NLNLAFFTP  183 (369)
Q Consensus       134 ~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D----~~~A~-n~Gi~f~~p  183 (369)
                          ++++++++||||+.                .|    +++|. ++|++++..
T Consensus       129 ----~~~~~~~~~vgDs~----------------~dD~~~~~~a~~~aG~~~i~~  163 (197)
T 1q92_A          129 ----VLTRDKTVVSADLL----------------IDDRPDITGAEPTPSWEHVLF  163 (197)
T ss_dssp             ----EECSCSTTSCCSEE----------------EESCSCCCCSCSSCSSEEEEE
T ss_pred             ----ccCCccEEEECccc----------------ccCCchhhhcccCCCceEEEe
Confidence                78999999999998                66    99999 999998653

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=98.80  E-value=2.9e-08  Score=86.52  Aligned_cols=95  Identities=19%  Similarity=0.174  Sum_probs=61.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccC---CcEEEeCCcch------hH-----------------------HHHHHHHHHHHh
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPL---NYTTVNRDTLG------SW-----------------------QKCVSVMKAALD  321 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~---~~~~i~~D~~~------~~-----------------------~~~~~~~~~~l~  321 (369)
                      +|+|+|+|||||||+++.|++.+   ++.+++.|...      ..                       +.+.+.+...+.
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~~i~~~l~   81 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYREPGGTKVGEVLREILLTEELDERTELLLFEASRSKLIEEKIIPDLK   81 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCCchHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            68999999999999999999976   88888876421      00                       111122334567


Q ss_pred             CCCcEEEeCC------------CCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         322 SGLSVVVDNT------------NPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       322 ~g~~vIiD~t------------n~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      .|..||+|..            .........+..++.....+-.++++++|.+++.+|-
T Consensus        82 ~~~~vi~dr~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~Rl  140 (195)
T 2pbr_A           82 RDKVVILDRFVLSTIAYQGYGKGLDVEFIKNLNEFATRGVKPDITLLLDIPVDIALRRL  140 (195)
T ss_dssp             TTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHH
T ss_pred             CCCEEEECcchhHHHHHccccCCCCHHHHHHHHHHhhcCCCCCEEEEEeCCHHHHHHHh
Confidence            8888999942            1222222222222222223557999999999999883

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=98.78  E-value=1.4e-08  Score=91.23  Aligned_cols=94  Identities=11%  Similarity=0.099  Sum_probs=61.8

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh-----------HH------------HHHHHHHHHHh----C
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS-----------WQ------------KCVSVMKAALD----S  322 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~-----------~~------------~~~~~~~~~l~----~  322 (369)
                      ++.+|+|+|+|||||||+++.|++.+++.+++.|.+ +.           .+            .....+...+.    .
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   83 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQ   83 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHcCCchhHHHHHHHHcCCcCCHHHHHHHHHHHHhhcccc
Confidence            456899999999999999999999999999998765 11           00            01111222211    2


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHHHHhcC-CeEEEEEEeCCHHHHHHHc
Q psy4598         323 GLSVVVDNTNPDKESRHRYIEAAKQHG-VRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       323 g~~vIiD~tn~~~~~r~~~~~la~~~~-~~v~~v~l~~~~e~~~~Rn  368 (369)
                      +..+|+|+...+......+    ...+ .+-.+|++++|.+++.+|-
T Consensus        84 ~~~~vidg~~~~~~~~~~l----~~~~~~~~~vi~L~~~~~~~~~R~  126 (222)
T 1zak_A           84 ENGWLLDGYPRSYSQAMAL----ETLEIRPDTFILLDVPDELLVERV  126 (222)
T ss_dssp             HTCEEEESCCCSHHHHHHH----HTTTCCCSEEEEEECCHHHHHHHH
T ss_pred             CCcEEEECCCCCHHHHHHH----HHcCCCCCEEEEEECCHHHHHHHH
Confidence            3467789855444333322    2222 2346899999999999883

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=98.78  E-value=6.3e-09  Score=90.04  Aligned_cols=88  Identities=18%  Similarity=0.239  Sum_probs=58.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh------------------HHHHHHHHHHHHhCCCcEEEeCCCCC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS------------------WQKCVSVMKAALDSGLSVVVDNTNPD  334 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~------------------~~~~~~~~~~~l~~g~~vIiD~tn~~  334 (369)
                      +.|+|+|+|||||||+++.|++.+++.+++.|.+..                  ++.....+...+.....+|+++....
T Consensus         5 ~~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~~g~~~~~~~~~~g~~~~~~~~~~~~~~l~~~~~~vi~~g~~~   84 (175)
T 1via_A            5 KNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGGF   84 (175)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEECCTTG
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHHcCCCHHHHHHHcCHHHHHHHHHHHHHHHHccCCEEEECCCCE
Confidence            468999999999999999999999999999998621                  11112222233444556777744321


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         335 KESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       335 ~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      ...+.     ++..+   .+||+++|.+++.+|.
T Consensus        85 ~~~~~-----l~~~~---~~i~l~~~~e~~~~R~  110 (175)
T 1via_A           85 VNVSN-----LEKAG---FCIYLKADFEYLKKRL  110 (175)
T ss_dssp             GGSTT-----GGGGC---EEEEEECCHHHHTTCC
T ss_pred             ehhhH-----HhcCC---EEEEEeCCHHHHHHHH
Confidence            11111     22333   5899999999998874

>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25

Probab=98.76  E-value=8e-09  Score=87.14  Aligned_cols=69  Identities=14%  Similarity=0.239  Sum_probs=50.8

Q ss_pred             ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcC
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLN  104 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~  104 (369)
                      .|+++||+||||....    +..    .....|++.++|++|+++|+.++|+|++++         .....+...++.+|
T Consensus         3 ~k~i~~DlDGTL~~~~----~~~----i~~~~~~~~~al~~l~~~G~~iii~TgR~~---------~~~~~~~~~l~~~g   65 (142)
T 2obb_A            3 AMTIAVDFDGTIVEHR----YPR----IGEEIPFAVETLKLLQQEKHRLILWSVREG---------ELLDEAIEWCRARG   65 (142)
T ss_dssp             CCEEEECCBTTTBCSC----TTS----CCCBCTTHHHHHHHHHHTTCEEEECCSCCH---------HHHHHHHHHHHTTT
T ss_pred             CeEEEEECcCCCCCCC----Ccc----ccccCHHHHHHHHHHHHCCCEEEEEeCCCc---------ccHHHHHHHHHHcC
Confidence            5899999999999742    111    111468999999999999999999999764         12334556688899


Q ss_pred             CCeEEE
Q psy4598         105 VPVQMF  110 (369)
Q Consensus       105 i~~~~~  110 (369)
                      +++..+
T Consensus        66 i~~~~I   71 (142)
T 2obb_A           66 LEFYAA   71 (142)
T ss_dssp             CCCSEE
T ss_pred             CCeEEE
Confidence            876533

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=98.72  E-value=1.2e-08  Score=88.46  Aligned_cols=86  Identities=15%  Similarity=0.180  Sum_probs=61.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch------------------hHHHHHHHHHHHHhCCCcEEEeCCCC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG------------------SWQKCVSVMKAALDSGLSVVVDNTNP  333 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~------------------~~~~~~~~~~~~l~~g~~vIiD~tn~  333 (369)
                      +.+|+|+|+|||||||+++.|++.+++.+++.|.+.                  ....+...+...+..|. +|+|..+.
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~vv~~~~~   89 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMREGG-VIVDYHGC   89 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTCEEEEETTTTEEEECHHHHHHHHHHHHHHCC-EEEECSCC
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhcchhhhhhhhhcCccCChHHHHHHHHHHHhcCC-EEEEechh
Confidence            467999999999999999999999999999998751                  02234555556666664 55665442


Q ss_pred             CHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         334 DKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       334 ~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      ..-         .. +....+||+++|.+++.+|.
T Consensus        90 ~~~---------~~-~~~~~vi~L~~~~e~l~~R~  114 (180)
T 3iij_A           90 DFF---------PE-RWFHIVFVLRTDTNVLYERL  114 (180)
T ss_dssp             TTS---------CG-GGCSEEEEEECCHHHHHHHH
T ss_pred             hhc---------ch-hcCCEEEEEECCHHHHHHHH
Confidence            110         00 11336899999999999884

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=98.69  E-value=5.3e-08  Score=87.08  Aligned_cols=90  Identities=9%  Similarity=0.193  Sum_probs=61.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh-----------------------HHHHHHHHHHHHhC---CCcE
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS-----------------------WQKCVSVMKAALDS---GLSV  326 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~-----------------------~~~~~~~~~~~l~~---g~~v  326 (369)
                      .|+|.|+|||||||+++.|++.+++.+++.|++ +.                       .+.....+...+..   +..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g~~~~~~~~~~~i~~~l~~~~~~~~~   81 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGF   81 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHcCChHHHHHHHHHHCCCcCCHHHHHHHHHHHHhccccCCCE
Confidence            479999999999999999999999999998664 21                       01122333444443   3579


Q ss_pred             EEeCCCCCHHHHHHHHHHHHhcCC-eEEEEEEeCCHHHHHHH
Q psy4598         327 VVDNTNPDKESRHRYIEAAKQHGV-RCIAVHMNISKEHAKHN  367 (369)
Q Consensus       327 IiD~tn~~~~~r~~~~~la~~~~~-~v~~v~l~~~~e~~~~R  367 (369)
                      |+|...........+   . ..+. +-.++++++|.+++.+|
T Consensus        82 i~dg~~~~~~~~~~l---~-~~~~~~d~vi~l~~~~e~~~~R  119 (214)
T 1e4v_A           82 LLDGFPRTIPQADAM---K-EAGINVDYVLEFDVPDELIVDR  119 (214)
T ss_dssp             EEESCCCSHHHHHHH---H-HTTCCCSEEEEEECCHHHHHHH
T ss_pred             EEeCCCCCHHHHHHH---H-hcCCCCCEEEEEECCHHHHHHH
Confidence            999865444333322   2 2332 34689999999999988

>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A

Probab=98.69  E-value=2.6e-08  Score=90.24  Aligned_cols=43  Identities=16%  Similarity=0.386  Sum_probs=36.8

Q ss_pred             ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecC
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQ   79 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq   79 (369)
                      .|+++||+||||+....            .+-|.+.++|++|+++|++++|+|+.
T Consensus         5 ~kli~~DlDGTLl~~~~------------~i~~~~~~~l~~l~~~g~~~~i~TGr   47 (227)
T 1l6r_A            5 IRLAAIDVDGNLTDRDR------------LISTKAIESIRSAEKKGLTVSLLSGN   47 (227)
T ss_dssp             CCEEEEEHHHHSBCTTS------------CBCHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             eEEEEEECCCCCcCCCC------------cCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            58999999999996431            25688999999999999999999984

>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A

Probab=98.69  E-value=7.8e-08  Score=88.86  Aligned_cols=43  Identities=9%  Similarity=-0.038  Sum_probs=37.9

Q ss_pred             CCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         119 RKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       119 rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      .++++..++.+++++    +++++++++|||+.                .|+.++.++|+.+.
T Consensus       195 ~~~K~~~l~~l~~~l----gi~~~~~i~~GD~~----------------NDi~m~~~ag~~va  237 (279)
T 4dw8_A          195 GIDKALSLSVLLENI----GMTREEVIAIGDGY----------------NDLSMIKFAGMGVA  237 (279)
T ss_dssp             TCCHHHHHHHHHHHH----TCCGGGEEEEECSG----------------GGHHHHHHSSEEEE
T ss_pred             CCChHHHHHHHHHHc----CCCHHHEEEECCCh----------------hhHHHHHHcCcEEE
Confidence            556788999999986    79999999999999                89999999998763

>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0

Probab=98.69  E-value=3.2e-08  Score=91.52  Aligned_cols=44  Identities=27%  Similarity=0.408  Sum_probs=29.8

Q ss_pred             ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCC
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQG   80 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~   80 (369)
                      .|+++||+||||+.+..            .+.+...++|++|+++|+.++++|..+
T Consensus         5 ~kli~~DlDGTLl~~~~------------~i~~~~~~al~~l~~~G~~~~iaTGR~   48 (279)
T 3mpo_A            5 IKLIAIDIDGTLLNEKN------------ELAQATIDAVQAAKAQGIKVVLCTGRP   48 (279)
T ss_dssp             CCEEEECC-----------------------CHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             eEEEEEcCcCCCCCCCC------------cCCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            68999999999997642            257889999999999999999999754

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.66  E-value=4.7e-08  Score=83.91  Aligned_cols=93  Identities=14%  Similarity=0.152  Sum_probs=59.3

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh------HHHHH------------HHHHHHHhCCCcEEEeCCC
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS------WQKCV------------SVMKAALDSGLSVVVDNTN  332 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~------~~~~~------------~~~~~~l~~g~~vIiD~tn  332 (369)
                      |+.+|+|+|+|||||||+++.|+..+++.+++.|.+..      ...+.            ..+...+....++|+....
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~~~~i~~i~~~~g~~~~~~~~~~~l~~l~~~~~~v~~~~~   82 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGG   82 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEEECCT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHhCcCHHHHHHHHhHHHHHHHHHHHHHHHHhCCCeEEECCC
Confidence            34689999999999999999999999999999887521      11111            1122233345567776422


Q ss_pred             CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         333 PDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       333 ~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      . .........+++..+   .++++++|.+++.+|
T Consensus        83 ~-~~~~~~~~~~l~~~~---~~i~l~~~~~~l~~R  113 (173)
T 1kag_A           83 G-SVKSRETRNRLSARG---VVVYLETTIEKQLAR  113 (173)
T ss_dssp             T-GGGSHHHHHHHHHHS---EEEECCCCHHHHHSC
T ss_pred             e-EEecHHHHHHHHhCC---EEEEEeCCHHHHHHH
Confidence            1 111122223334444   378999999998876

>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A

Probab=98.66  E-value=9.4e-09  Score=95.29  Aligned_cols=108  Identities=16%  Similarity=0.234  Sum_probs=73.3

Q ss_pred             CCceEEEEecCCceeecCC--------CCCCCCCcccc--------ccccccHHHHHHHHHHCCcEEEEEecCCCcCCCC
Q psy4598          23 NSAKIASFDLDGTLITTKS--------GKVFPVDTHDW--------KLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKK   86 (369)
Q Consensus        23 ~~~k~~~fDlDgTLi~~~s--------g~~~~~~~~d~--------~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~   86 (369)
                      ...++++||+||||.....        +..|  +..+|        ..++||+.+.|+.|++.|++|+|+||.+..    
T Consensus        56 ~~~~avVfDIDgTlldn~~y~~~~~~~~~~f--~~~~w~~wv~~~~~~~~pG~~ell~~L~~~G~ki~ivTgR~~~----  129 (262)
T 3ocu_A           56 GKKKAVVADLNETMLDNSPYAGWQVQNNKPF--DGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYVTNRKDS----  129 (262)
T ss_dssp             TCEEEEEECCBTTTEECHHHHHHHHHHTCCC--CHHHHHHHHHHTCCEECTTHHHHHHHHHHTTEEEEEEEEEETT----
T ss_pred             CCCeEEEEECCCcCCCCchhhhhhccccccC--CHHHHHHHHHcCCCCCCccHHHHHHHHHHCCCeEEEEeCCCcc----
Confidence            4557999999999997641        2233  22222        236899999999999999999999995421    


Q ss_pred             CCHHHHHHHHHHHHHHcCCCe----EEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCcc
Q psy4598          87 MSTRDFQAKAEKIIKSLNVPV----QMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAA  151 (369)
Q Consensus        87 ~~~~~~~~~i~~~l~~l~i~~----~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~  151 (369)
                          ..+......|+.+|++.    .++....    ..++......+.++     +.  .-+.||||..
T Consensus       130 ----~~r~~T~~~L~~lGi~~~~~~~Lilr~~----~~~K~~~r~~l~~~-----Gy--~iv~~vGD~~  183 (262)
T 3ocu_A          130 ----TEKSGTIDDMKRLGFNGVEESAFYLKKD----KSAKAARFAEIEKQ-----GY--EIVLYVGDNL  183 (262)
T ss_dssp             ----TTHHHHHHHHHHHTCSCCSGGGEEEESS----CSCCHHHHHHHHHT-----TE--EEEEEEESSG
T ss_pred             ----chHHHHHHHHHHcCcCcccccceeccCC----CCChHHHHHHHHhc-----CC--CEEEEECCCh
Confidence                02344566688899985    4555433    13346677776665     12  2399999998

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=98.65  E-value=2.9e-08  Score=86.40  Aligned_cols=90  Identities=12%  Similarity=0.101  Sum_probs=57.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCC-----cEEEeCCcc-h----------hH-----------HHHH----HHHHHHH-
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLN-----YTTVNRDTL-G----------SW-----------QKCV----SVMKAAL-  320 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~-----~~~i~~D~~-~----------~~-----------~~~~----~~~~~~l-  320 (369)
                      ++|+|+|+|||||||+++.|++.++     +.+++.|++ +          .+           ..+.    ..+...+ 
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~   81 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEKQKKLQIDAAKGIAEEAR   81 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHTTTSCSSHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHHHhcccccchhhhhcCCHHHHHHHHHHHHHHHHHHhh
Confidence            5899999999999999999999876     788875432 1          01           1111    1123344 


Q ss_pred             -hCCCcEEEeCCCCCHHH--------HHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         321 -DSGLSVVVDNTNPDKES--------RHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       321 -~~g~~vIiD~tn~~~~~--------r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                       ..+..||+|........        +..+..    .. +..++++++|.+++.+|
T Consensus        82 ~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~----~~-~~~vi~l~~~~~~~~~r  132 (194)
T 1nks_A           82 AGGEGYLFIDTHAVIRTPSGYLPGLPSYVITE----IN-PSVIFLLEADPKIILSR  132 (194)
T ss_dssp             HTCSSEEEEEECSEEEETTEEEESSCHHHHHH----HC-CSEEEEEECCHHHHHHH
T ss_pred             ccCCCEEEECCchhhccccccccCCCHHHHHh----cC-CCEEEEEeCCHHHHHHH
Confidence             67889999975210000        122222    11 34689999999988755

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=98.65  E-value=4.5e-08  Score=85.60  Aligned_cols=91  Identities=16%  Similarity=0.251  Sum_probs=60.9

Q ss_pred             ccccccEEEEEEcCCCCcHHHHHHHHhcc-CCcEEEeCCcchh-------H--------------HHHHHHHHHHHhCCC
Q psy4598         267 MKAALDSVLIMIGSQGSGKSSFVSTYLKP-LNYTTVNRDTLGS-------W--------------QKCVSVMKAALDSGL  324 (369)
Q Consensus       267 ~~~~~~~lIll~G~pGSGKSTla~~L~~~-~~~~~i~~D~~~~-------~--------------~~~~~~~~~~l~~g~  324 (369)
                      |.++.+..|+|+|+|||||||+++.|++. +++.+++.|.+-.       +              ....+.+...+..+.
T Consensus         5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~l~~~~~~~g   84 (184)
T 1y63_A            5 MEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDFMEPIMVSRG   84 (184)
T ss_dssp             -CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCSCC------CCCCCHHHHHHHHHHHHHHHTSSS
T ss_pred             cCCCCCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHhhhhhhHHHHhhhcccCCCCHHHHHHHHHHHHhccC
Confidence            34455678999999999999999999999 7999999887521       0              112233344442344


Q ss_pred             cEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         325 SVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       325 ~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      .+|+|..+...     +    ++... -.+|++++|.+++.+|
T Consensus        85 ~~vi~~~~~~~-----~----~~~~~-~~vi~l~~~~e~~~~R  117 (184)
T 1y63_A           85 NHVVDYHSSEL-----F----PERWF-HMVVVLHTSTEVLFER  117 (184)
T ss_dssp             EEEEECSCCTT-----S----CGGGC-SEEEEEECCHHHHHHH
T ss_pred             CEEEeCchHhh-----h----hhccC-CEEEEEECCHHHHHHH
Confidence            67788654311     1    11112 2589999999999887

>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0

Probab=98.65  E-value=1.5e-07  Score=86.42  Aligned_cols=46  Identities=30%  Similarity=0.417  Sum_probs=37.7

Q ss_pred             CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCC
Q psy4598          24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQG   80 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~   80 (369)
                      +.|+++||+||||+.+...           .+.+...++|++|+++|++++++|..+
T Consensus        11 miKli~~DlDGTLl~~~~~-----------~i~~~~~~al~~l~~~G~~~~iaTGR~   56 (268)
T 3r4c_A           11 MIKVLLLDVDGTLLSFETH-----------KVSQSSIDALKKVHDSGIKIVIATGRA   56 (268)
T ss_dssp             CCCEEEECSBTTTBCTTTC-----------SCCHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ceEEEEEeCCCCCcCCCCC-----------cCCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            4699999999999973211           257789999999999999999999654

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=98.64  E-value=1.3e-08  Score=88.59  Aligned_cols=93  Identities=12%  Similarity=0.139  Sum_probs=56.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCC-----cEEEeCCcc-hh---------------------HHHHHHHH---HHHHhC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLN-----YTTVNRDTL-GS---------------------WQKCVSVM---KAALDS  322 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~-----~~~i~~D~~-~~---------------------~~~~~~~~---~~~l~~  322 (369)
                      .+|+|+|+|||||||+++.|++.++     +.+++.|.+ +.                     ...+...+   ...+..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~   83 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMAGRKIAEMAK   83 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSSCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHhccCCCCCHHHHhcCCHHHHHHHHHHHHHHHHhhcc
Confidence            5899999999999999999999876     888986542 10                     11111111   111234


Q ss_pred             CCcEEEeCCCCCHHHHHHH----HHHHHhcCCeEEEEEEeCCHHHHHH
Q psy4598         323 GLSVVVDNTNPDKESRHRY----IEAAKQHGVRCIAVHMNISKEHAKH  366 (369)
Q Consensus       323 g~~vIiD~tn~~~~~r~~~----~~la~~~~~~v~~v~l~~~~e~~~~  366 (369)
                      +..||+|...........+    ..+.+.....+ +|++++|.+++.+
T Consensus        84 ~~~viid~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~l~~~~~~~~~  130 (192)
T 1kht_A           84 ESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDL-IIVVETTGDEILM  130 (192)
T ss_dssp             TSCEEEECCSEEEETTEEEESSCHHHHHHHCCSE-EEEEECCHHHHHH
T ss_pred             CCeEEEccceeccccccccccCcHHHHhccCCCE-EEEEeCCHHHHHH
Confidence            6689999764310000000    01122223344 9999999999985

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=98.63  E-value=4.5e-08  Score=83.90  Aligned_cols=36  Identities=31%  Similarity=0.412  Sum_probs=32.3

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      .+..|+|+|+|||||||+++.|++.+++.+++.|.+
T Consensus         6 ~~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~   41 (168)
T 1zuh_A            6 HMQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMI   41 (168)
T ss_dssp             --CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHH
T ss_pred             ccceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHH
Confidence            456899999999999999999999999999999986

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=98.62  E-value=1e-07  Score=84.16  Aligned_cols=97  Identities=18%  Similarity=0.079  Sum_probs=58.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCc--EEEe-----CCcchhH--------------HHH----------HHHHHHHH
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNY--TTVN-----RDTLGSW--------------QKC----------VSVMKAAL  320 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~--~~i~-----~D~~~~~--------------~~~----------~~~~~~~l  320 (369)
                      +.+|+|.|+|||||||+++.|++.++.  .++.     .+.++.+              ..+          .+.+..++
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~i~~~l   83 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIKEAKKKDLLTPLTFSLIHATDFSDRYERYILPML   83 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHHHHhccccccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            478999999999999999999997654  1232     1212110              000          01123456


Q ss_pred             hCCCcEEEeCCCCCHHH--------HHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         321 DSGLSVVVDNTNPDKES--------RHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       321 ~~g~~vIiD~tn~~~~~--------r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      ..|..||+|....+...        +..+..+......+-.++++++|.+++.+|.
T Consensus        84 ~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl  139 (213)
T 2plr_A           84 KSGFIVISDRYIYTAYARDSVRGVDIDWVKKLYSFAIKPDITFYIRVSPDIALERI  139 (213)
T ss_dssp             HTTCEEEEESCHHHHHHHHHTTTCCHHHHHHHTTTSCCCSEEEEEECCHHHHHHHH
T ss_pred             hCCCEEEEeCcHhHHHHHHHhhCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHH
Confidence            67889999976432211        1122233222233446899999999999884

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=98.62  E-value=3.8e-08  Score=87.44  Aligned_cols=90  Identities=17%  Similarity=0.213  Sum_probs=58.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCC-----------------------cEEEeCCcchhH-----------------HH
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLN-----------------------YTTVNRDTLGSW-----------------QK  311 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~-----------------------~~~i~~D~~~~~-----------------~~  311 (369)
                      +.+|+|+|+|||||||+++.|++.++                       +.+++.|.+...                 ..
T Consensus        12 ~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (204)
T 2qor_A           12 IPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFYGT   91 (204)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCeecC
Confidence            46899999999999999999998763                       222333333210                 00


Q ss_pred             HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCC--eEEEEEEe-CCHHHHHHHc
Q psy4598         312 CVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGV--RCIAVHMN-ISKEHAKHNI  368 (369)
Q Consensus       312 ~~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~--~v~~v~l~-~~~e~~~~Rn  368 (369)
                      ....+...++.|..||+|...   +....+    ++...  ...+||++ +|.+++.+|-
T Consensus        92 ~~~~i~~~l~~g~~vi~d~~~---~~~~~l----~~~~~~~~~~~i~l~~~s~e~l~~Rl  144 (204)
T 2qor_A           92 LKSEYDLAVGEGKICLFEMNI---NGVKQL----KESKHIQDGIYIFVKPPSIDILLGRL  144 (204)
T ss_dssp             EHHHHHHHHHTTCEEEEECCH---HHHHHH----HHCSSCSCCEEEEEECSCHHHHHHHH
T ss_pred             CHHHHHHHHHcCCeEEEEECH---HHHHHH----HHhcCCCCeEEEEEcCCCHHHHHHHH
Confidence            123456677899999999643   222222    22222  45788998 8999998873

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.61  E-value=8.3e-08  Score=98.17  Aligned_cols=97  Identities=14%  Similarity=0.182  Sum_probs=63.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCC------cEEEeCCcchh----------------HHHHHHHHHHHHhCCCcEEE
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLN------YTTVNRDTLGS----------------WQKCVSVMKAALDSGLSVVV  328 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~------~~~i~~D~~~~----------------~~~~~~~~~~~l~~g~~vIi  328 (369)
                      ...+|+|+|++||||||+++.|+..++      +.+++.|.++.                ++.+...++.....+..+|.
T Consensus       368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l~~~~~ivi~  447 (552)
T 3cr8_A          368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEITKNRGIAIC  447 (552)
T ss_dssp             SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHhcCCEEEE
Confidence            347899999999999999999998752      45688887632                11222233344445655665


Q ss_pred             eCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         329 DNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       329 D~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      .........|....++++..+ .+..||+++|.++|.+|.
T Consensus       448 ~~~~~~~~~r~~~r~lL~~~g-~f~~V~L~~~~e~~~~R~  486 (552)
T 3cr8_A          448 APIAPYRQTRRDVRAMIEAVG-GFVEIHVATPIETCESRD  486 (552)
T ss_dssp             CCCCCCHHHHHHHHHHHHTTS-EEEEEEECC---------
T ss_pred             ecCCccHHHHHHHHHHHHHcC-CEEEEEEcCCHHHHHHhc
Confidence            555555778888888888877 789999999999999885

>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0

Probab=98.58  E-value=1.5e-07  Score=87.43  Aligned_cols=44  Identities=14%  Similarity=0.370  Sum_probs=37.4

Q ss_pred             ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCC
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQG   80 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~   80 (369)
                      .|+++|||||||+.+..            .+.+...++|++|+++|+.++++|..+
T Consensus         6 ~kli~fDlDGTLl~~~~------------~i~~~~~~al~~l~~~G~~~~iaTGR~   49 (290)
T 3dnp_A            6 KQLLALNIDGALLRSNG------------KIHQATKDAIEYVKKKGIYVTLVTNRH   49 (290)
T ss_dssp             CCEEEECCCCCCSCTTS------------CCCHHHHHHHHHHHHTTCEEEEBCSSC
T ss_pred             ceEEEEcCCCCCCCCCC------------ccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            58999999999997642            257889999999999999999998654

>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}

Probab=98.58  E-value=1e-07  Score=89.62  Aligned_cols=45  Identities=27%  Similarity=0.456  Sum_probs=37.0

Q ss_pred             CceEEEEecCCceeecCCCCCCCCCcccccccccc-HHHHHHHHHHCCcEEEEEecCC
Q psy4598          24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSN-IESVLKQYLDDGYKLVIFTNQG   80 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~-v~~~L~~L~~~G~~i~i~TNq~   80 (369)
                      +.|+++||+||||+.+..            .+.+. ..++|++|+++|+.++++|..+
T Consensus        36 ~iKli~fDlDGTLld~~~------------~i~~~~~~~al~~l~~~G~~~~iaTGR~   81 (304)
T 3l7y_A           36 SVKVIATDMDGTFLNSKG------------SYDHNRFQRILKQLQERDIRFVVASSNP   81 (304)
T ss_dssp             CCSEEEECCCCCCSCTTS------------CCCHHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             eeEEEEEeCCCCCCCCCC------------ccCHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            469999999999997643            14566 7899999999999999999754

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=98.57  E-value=1.4e-08  Score=90.08  Aligned_cols=97  Identities=16%  Similarity=0.156  Sum_probs=57.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-------------hh------------HHHHH--------HHHHH
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-------------GS------------WQKCV--------SVMKA  318 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-------------~~------------~~~~~--------~~~~~  318 (369)
                      +.+|+|+|+|||||||+++.|++.++..+++.|.+             +.            ...+.        +.+..
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~   89 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLYFPNRETGIGQIISKYLKMENSMSNETIHLLFSANRWEHMNEIKS   89 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999998754322222111             00            00111        12345


Q ss_pred             HHhCCCcEEEeCCCCCHH----HH----HHHHH-HHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         319 ALDSGLSVVVDNTNPDKE----SR----HRYIE-AAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       319 ~l~~g~~vIiD~tn~~~~----~r----~~~~~-la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      .+..+..||+|....+..    .+    ..++. +......+-.+|++++|.+++.+|.
T Consensus        90 ~l~~~~~vi~D~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~d~vi~l~~~~e~~~~Rl  148 (212)
T 2wwf_A           90 LLLKGIWVVCDRYAYSGVAYSSGALNLNKTWCMNPDQGLIKPDVVFYLNVPPNYAQNRS  148 (212)
T ss_dssp             HHHHTCEEEEECCHHHHHHHHHHHSCCCHHHHHGGGTTSBCCSEEEEEECCTTGGGGST
T ss_pred             HHhCCCEEEEecchhhHHHHHHhccCCCHHHHHHHhhCCCCCCEEEEEeCCHHHHHHhh
Confidence            566788899997653211    11    11211 1121223456899999999998874

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=98.57  E-value=5.1e-08  Score=86.56  Aligned_cols=97  Identities=16%  Similarity=0.184  Sum_probs=56.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCC-----cEEEeCCc--------chh----------H--HHH--------HHHHHH
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLN-----YTTVNRDT--------LGS----------W--QKC--------VSVMKA  318 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~-----~~~i~~D~--------~~~----------~--~~~--------~~~~~~  318 (369)
                      +.+|+|+|+|||||||+++.|++.++     +..+....        ++.          +  ..+        ...+..
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~i~~   88 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLIKE   88 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEeeCCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            57999999999999999999998642     22222110        110          0  000        013445


Q ss_pred             HHhCCCcEEEeCCCCCHH---------HHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         319 ALDSGLSVVVDNTNPDKE---------SRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       319 ~l~~g~~vIiD~tn~~~~---------~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      .+..|..||+|....+..         .+..+..+......+-.+|++++|.+++.+|.
T Consensus        89 ~l~~~~~vi~dr~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~d~vi~l~~~~e~~~~Rl  147 (215)
T 1nn5_A           89 KLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRG  147 (215)
T ss_dssp             HHHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-
T ss_pred             HHHCCCEEEEeCCcccHHHHHhhcCCCCHHHHHHHHhCCCCCCEEEEEeCCHHHHHHHh
Confidence            567888899995421100         01222222222223456899999999999884

>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I

Probab=98.55  E-value=2.1e-07  Score=86.97  Aligned_cols=105  Identities=15%  Similarity=0.147  Sum_probs=75.2

Q ss_pred             ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcC
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLN  104 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~  104 (369)
                      .+++++|.|+++.....        .. ..++|++.+.|+.|+++|++++|+||.+            ...+..+++.+|
T Consensus       143 ~~~i~~~~d~~~~~~~~--------~~-~~~~~g~~~~l~~L~~~g~~~~i~T~~~------------~~~~~~~l~~~g  201 (287)
T 3a1c_A          143 KTAVIVARNGRVEGIIA--------VS-DTLKESAKPAVQELKRMGIKVGMITGDN------------WRSAEAISRELN  201 (287)
T ss_dssp             CEEEEEEETTEEEEEEE--------EE-CCBCTTHHHHHHHHHHTTCEEEEECSSC------------HHHHHHHHHHHT
T ss_pred             CeEEEEEECCEEEEEEE--------ec-cccchhHHHHHHHHHHCCCeEEEEeCCC------------HHHHHHHHHHhC
Confidence            46889999998764310        11 1379999999999999999999999953            233556677788


Q ss_pred             CCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc
Q psy4598         105 VPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF  180 (369)
Q Consensus       105 i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f  180 (369)
                      +.-  ++..     -.|.+  ...+++.+    +.+ ++++||||+.                .|+.+|+++|+..
T Consensus       202 l~~--~f~~-----i~~~~--K~~~~~~l----~~~-~~~~~vGDs~----------------~Di~~a~~ag~~v  247 (287)
T 3a1c_A          202 LDL--VIAE-----VLPHQ--KSEEVKKL----QAK-EVVAFVGDGI----------------NDAPALAQADLGI  247 (287)
T ss_dssp             CSE--EECS-----CCTTC--HHHHHHHH----TTT-CCEEEEECTT----------------TCHHHHHHSSEEE
T ss_pred             Cce--eeee-----cChHH--HHHHHHHH----hcC-CeEEEEECCH----------------HHHHHHHHCCeeE
Confidence            741  1111     01222  25667765    566 9999999998                8999999999973

>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}

Probab=98.54  E-value=3.4e-08  Score=91.42  Aligned_cols=106  Identities=16%  Similarity=0.230  Sum_probs=69.9

Q ss_pred             ceEEEEecCCceeecC--------CCCCCCCCcccc--------ccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCC
Q psy4598          25 AKIASFDLDGTLITTK--------SGKVFPVDTHDW--------KLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMS   88 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~--------sg~~~~~~~~d~--------~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~   88 (369)
                      .++++||+||||....        .++.|.  +..|        ..++||+.+.|+.|++.|++|+|+||.+..      
T Consensus        58 ~~avVfDIDgTlldn~~y~~~~~~~~~~f~--~~~w~~wv~~g~~~~~pg~~ell~~L~~~G~~i~ivTgR~~~------  129 (260)
T 3pct_A           58 KKAVVVDLDETMIDNSAYAGWQVQSGQGFS--PKTWTKWVDARQSAAIPGAVEFSNYVNANGGTMFFVSNRRDD------  129 (260)
T ss_dssp             CEEEEECCBTTTEECHHHHHHHHHHTCCCC--HHHHHHHHHTTCCEECTTHHHHHHHHHHTTCEEEEEEEEETT------
T ss_pred             CCEEEEECCccCcCChhHHHhhcccCCCCC--HHHHHHHHHcCCCCCCccHHHHHHHHHHCCCeEEEEeCCCcc------
Confidence            3599999999999763        122232  1111        236899999999999999999999995421      


Q ss_pred             HHHHHHHHHHHHHHcCCCe----EEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCcc
Q psy4598          89 TRDFQAKAEKIIKSLNVPV----QMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAA  151 (369)
Q Consensus        89 ~~~~~~~i~~~l~~l~i~~----~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~  151 (369)
                        ..+......|+.+|++.    .++....    ..........+.+.     +  ..-+.||||..
T Consensus       130 --~~r~~T~~~L~~lGi~~~~~~~Lilr~~----~~~K~~~r~~L~~~-----g--y~iv~~iGD~~  183 (260)
T 3pct_A          130 --VEKAGTVDDMKRLGFTGVNDKTLLLKKD----KSNKSVRFKQVEDM-----G--YDIVLFVGDNL  183 (260)
T ss_dssp             --TSHHHHHHHHHHHTCCCCSTTTEEEESS----CSSSHHHHHHHHTT-----T--CEEEEEEESSG
T ss_pred             --ccHHHHHHHHHHcCcCccccceeEecCC----CCChHHHHHHHHhc-----C--CCEEEEECCCh
Confidence              02344566688899974    2555442    12235555555542     1  23399999998

>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}

Probab=98.53  E-value=3.1e-07  Score=85.49  Aligned_cols=46  Identities=26%  Similarity=0.377  Sum_probs=37.5

Q ss_pred             CCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCC
Q psy4598          23 NSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQG   80 (369)
Q Consensus        23 ~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~   80 (369)
                      .+.|+++||+||||+.+..            .+.+...++|++|+++|++++|+|..+
T Consensus        19 ~~~kli~~DlDGTLl~~~~------------~i~~~~~~al~~l~~~G~~v~iaTGR~   64 (285)
T 3pgv_A           19 GMYQVVASDLDGTLLSPDH------------FLTPYAKETLKLLTARGINFVFATGRH   64 (285)
T ss_dssp             --CCEEEEECCCCCSCTTS------------CCCHHHHHHHHHHHTTTCEEEEECSSC
T ss_pred             CcceEEEEeCcCCCCCCCC------------cCCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            4569999999999997542            257789999999999999999999754

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=98.52  E-value=2.5e-07  Score=84.06  Aligned_cols=98  Identities=20%  Similarity=0.274  Sum_probs=65.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCC--cEEEeCCc---------chh----------HHH-H-H--H-------HHHH
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLN--YTTVNRDT---------LGS----------WQK-C-V--S-------VMKA  318 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~--~~~i~~D~---------~~~----------~~~-~-~--~-------~~~~  318 (369)
                      +..+|++.|+|||||||+++.|++.++  ..++....         ++.          +.. + .  .       .+..
T Consensus        25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~~~p~~~~~g~~i~~~~~~~~~~~~~~~~ll~~a~r~~~~~~~i~~  104 (229)
T 4eaq_A           25 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIP  104 (229)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEECTTTTCHHHHHHHHHTTC---CCHHHHHHHHHHHHHHHCCCCCHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceeecCCCCCchHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            457999999999999999999998764  33332211         110          000 0 0  1       1134


Q ss_pred             HHhCCCcEEEe----------CC--CCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         319 ALDSGLSVVVD----------NT--NPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       319 ~l~~g~~vIiD----------~t--n~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      +++.|..||+|          +.  +........+..++...-.+-.++++++|.+++.+|.
T Consensus       105 ~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~~R~  166 (229)
T 4eaq_A          105 ALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERI  166 (229)
T ss_dssp             HHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHH
T ss_pred             HHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHH
Confidence            56788899999          43  4566666666666655556678999999999999883

>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}

Probab=98.50  E-value=9.3e-07  Score=82.19  Aligned_cols=48  Identities=27%  Similarity=0.406  Sum_probs=38.8

Q ss_pred             CCCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCC
Q psy4598          22 CNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQG   80 (369)
Q Consensus        22 ~~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~   80 (369)
                      ..+.|+++|||||||+.+...           .+.+...++|++|+++|+.++++|..+
T Consensus        18 ~~~~kli~~DlDGTLl~~~~~-----------~i~~~~~~al~~l~~~G~~v~iaTGR~   65 (283)
T 3dao_A           18 QGMIKLIATDIDGTLVKDGSL-----------LIDPEYMSVIDRLIDKGIIFVVCSGRQ   65 (283)
T ss_dssp             -CCCCEEEECCBTTTBSTTCS-----------CCCHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ccCceEEEEeCcCCCCCCCCC-----------cCCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            356799999999999966421           256889999999999999999999754

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=98.49  E-value=3.4e-07  Score=83.28  Aligned_cols=91  Identities=13%  Similarity=0.227  Sum_probs=63.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hhH-----------------------HHHHHHHHHHHhC---CCcE
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GSW-----------------------QKCVSVMKAALDS---GLSV  326 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~~-----------------------~~~~~~~~~~l~~---g~~v  326 (369)
                      -+-+.|+|||||||+|+.|++.+++.+|+.+++ +..                       +.....+.+.+..   +..+
T Consensus        10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t~lG~~i~~~~~~G~lvpdei~~~ll~~~l~~~~~~~g~   89 (230)
T 3gmt_A           10 RLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGTPLGVEAKTYMDEGKLVPDSLIIGLVKERLKEADCANGY   89 (230)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHSGGGTTCE
T ss_pred             ceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCChHHHHHHHHHhhccccccHHHHHHHHHHHhCcccCCCe
Confidence            356889999999999999999999999998654 210                       1123344455543   4579


Q ss_pred             EEeCCCCCHHHHHHHHHHHHhcCC-eEEEEEEeCCHHHHHHHc
Q psy4598         327 VVDNTNPDKESRHRYIEAAKQHGV-RCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       327 IiD~tn~~~~~r~~~~~la~~~~~-~v~~v~l~~~~e~~~~Rn  368 (369)
                      |+|+...+..+...+    .+.+. .-.+|+|++|.+++.+|-
T Consensus        90 ILDGfPRt~~Qa~~L----~~~~~~~d~VI~Ldvp~e~l~~Rl  128 (230)
T 3gmt_A           90 LFDGFPRTIAQADAM----KEAGVAIDYVLEIDVPFSEIIERM  128 (230)
T ss_dssp             EEESCCCSHHHHHHH----HHTTCCCSEEEEECCCHHHHHHHH
T ss_pred             EecCCCCcHHHHHHH----HHhCCCccEEEEEeCCHHHHHHHH
Confidence            999976665444433    23332 346899999999999883

>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron} SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A

Probab=98.49  E-value=8.5e-07  Score=81.29  Aligned_cols=44  Identities=9%  Similarity=0.068  Sum_probs=37.8

Q ss_pred             CCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         118 YRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       118 ~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      ..+|++..+..+++++    +++++++++|||+.                +|+.++.++|+.+.
T Consensus       184 ~~~~K~~~~~~~~~~~----~~~~~~~~~iGD~~----------------nD~~~~~~ag~~v~  227 (261)
T 2rbk_A          184 KGDTKQKGIDEIIRHF----GIKLEETMSFGDGG----------------NDISMLRHAAIGVA  227 (261)
T ss_dssp             TTCSHHHHHHHHHHHH----TCCGGGEEEEECSG----------------GGHHHHHHSSEEEE
T ss_pred             CCCChHHHHHHHHHHc----CCCHHHEEEECCCH----------------HHHHHHHHcCceEE
Confidence            3567778888888886    68999999999998                89999999999653

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=98.48  E-value=8.2e-07  Score=77.84  Aligned_cols=29  Identities=28%  Similarity=0.516  Sum_probs=26.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEe
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVN  302 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~  302 (369)
                      +|+|.|+|||||||+++.|++.++..++.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~   30 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLGYEIFK   30 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence            68999999999999999999998877765

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=98.46  E-value=6.2e-07  Score=82.30  Aligned_cols=41  Identities=20%  Similarity=0.242  Sum_probs=33.0

Q ss_pred             ccccccEEEEEEcCCCCcHHHHHHHHhccCCcE----------EEeCCcch
Q psy4598         267 MKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYT----------TVNRDTLG  307 (369)
Q Consensus       267 ~~~~~~~lIll~G~pGSGKSTla~~L~~~~~~~----------~i~~D~~~  307 (369)
                      +....+.+|.|+|+|||||||+|+.|++.+++.          +++.|.+.
T Consensus        17 ~~~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~   67 (252)
T 1uj2_A           17 PNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY   67 (252)
T ss_dssp             ----CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred             ccCCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence            334456799999999999999999999988765          89999873

>3zx4_A MPGP, mannosyl-3-phosphoglycerate phosphatase; hydrolase, haloalkanoid acid dehalogenase-like phosphatase, crystallographic snapshot; HET: 2M8; 1.74A {Thermus thermophilus} PDB: 3zty_A 3zu6_A* 3ztw_A* 3zw7_A* 3zwd_A* 3zwk_A 3zup_A* 3zx5_A*

Probab=98.45  E-value=3.8e-07  Score=83.62  Aligned_cols=42  Identities=14%  Similarity=-0.020  Sum_probs=37.5

Q ss_pred             CCchhHHHHHHHHhcCCccccC--CccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         120 KPVPGMWEYLSQEKNGDLAIDI--SQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       120 KP~~gm~~~~~~~~~~~~~i~~--~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      ++++..++.+++++    ++++  +++++|||+.                +|+.++.++|+.+.
T Consensus       175 ~~K~~~l~~l~~~~----~i~~~~~~~~~~GD~~----------------nD~~m~~~ag~~va  218 (259)
T 3zx4_A          175 ADKGRAVARLRALW----PDPEEARFAVGLGDSL----------------NDLPLFRAVDLAVY  218 (259)
T ss_dssp             CCHHHHHHHHHHTC----SSHHHHTSEEEEESSG----------------GGHHHHHTSSEEEE
T ss_pred             CCHHHHHHHHHHHh----CCCCCCceEEEEeCCH----------------HHHHHHHhCCCeEE
Confidence            67788999999885    7888  9999999999                89999999998864

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=98.45  E-value=2.4e-06  Score=81.88  Aligned_cols=95  Identities=13%  Similarity=0.233  Sum_probs=64.8

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch--------------------------------------hHHH-
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG--------------------------------------SWQK-  311 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~--------------------------------------~~~~-  311 (369)
                      ++.+|+|+||+||||||++..|++.++..+||.|.+.                                      .|.. 
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi~~~~~e~~s~~~F~~~  118 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGEVDPARGELTPADFRSL  118 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSCBCGGGCCCCHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccccCcccCccCHHHHHHH
Confidence            3469999999999999999999999999999999861                                      1222 


Q ss_pred             HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHH------------------HHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         312 CVSVMKAALDSGLSVVVDNTNPDKESRHRYIE------------------AAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       312 ~~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~------------------la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      ..+.+.+....|+.+|+-+..  .-..+.++.                  +.....+.+.+++++++.+++.+|
T Consensus       119 a~~~i~~i~~~g~~pIlvGGt--glYi~all~g~~~p~~~d~~~a~~~~~~~~~~~~~~~~i~L~~~re~L~~R  190 (339)
T 3a8t_A          119 AGKAVSEITGRRKLPVLVGGS--NSFIHALLVDRFDSSGPGVFEEGSHSVVSSELRYDCCFLWVDVSVKVLTDY  190 (339)
T ss_dssp             HHHHHHHHHHTTCEEEEECCC--HHHHHHHHBSSCCTTCC-------------CBSSEEEEEEEECCHHHHHHH
T ss_pred             HHHHHHHHHhcCCeEEEEcCH--HHHHHHHHhCCCCCcccChhhhcccCccccccccCeEEEEEeCCHHHHHHH
Confidence            233344455678877765442  111222211                  001234678899999999998877

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=98.43  E-value=2.4e-07  Score=82.00  Aligned_cols=35  Identities=26%  Similarity=0.347  Sum_probs=32.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      ..+|.|+|.+||||||+++.|++.+++.+|+.|.+
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~   46 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRI   46 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHH
Confidence            46899999999999999999999989999999987

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=98.39  E-value=4.2e-07  Score=85.09  Aligned_cols=38  Identities=32%  Similarity=0.287  Sum_probs=33.0

Q ss_pred             cccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         268 KAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       268 ~~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      .++.|.+|.|+|+|||||||+++.|+ .+++.+|+.|.+
T Consensus        71 ~~~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~  108 (281)
T 2f6r_A           71 LPSGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHL  108 (281)
T ss_dssp             SCTTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHH
Confidence            34456899999999999999999999 578999998875

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=98.38  E-value=5.5e-07  Score=79.67  Aligned_cols=35  Identities=23%  Similarity=0.466  Sum_probs=31.3

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      |+.+|.|+|+|||||||+++.|+. +++.+++.|.+
T Consensus         1 m~~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~   35 (206)
T 1jjv_A            1 MTYIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVV   35 (206)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH-CCCcccchHHH
Confidence            356899999999999999999988 89999998875

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=98.36  E-value=8.9e-07  Score=77.83  Aligned_cols=95  Identities=11%  Similarity=0.157  Sum_probs=56.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-CcEEEeCCcch----------h-------H----HHH---------HHHHHHHH
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-NYTTVNRDTLG----------S-------W----QKC---------VSVMKAAL  320 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-~~~~i~~D~~~----------~-------~----~~~---------~~~~~~~l  320 (369)
                      +.+|+|+|+|||||||+++.|++.+ ++.+++.+...          .       +    ..+         .+.+...+
T Consensus         4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~l~~~~r~~~~~~i~~~l   83 (204)
T 2v54_A            4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLNFPQRSTVTGKMIDDYLTRKKTYNDHIVNLLFCANRWEFASFIQEQL   83 (204)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEESSCTTSHHHHHHHHHHTSSCCCCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEecCCCCCcHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4689999999999999999999987 46555433211          0       0    000         01223456


Q ss_pred             hCCCcEEEeCCCCCHHH--------HHHHHHHHHhcCCeEEEEEEeCCHHHHHH
Q psy4598         321 DSGLSVVVDNTNPDKES--------RHRYIEAAKQHGVRCIAVHMNISKEHAKH  366 (369)
Q Consensus       321 ~~g~~vIiD~tn~~~~~--------r~~~~~la~~~~~~v~~v~l~~~~e~~~~  366 (369)
                      ..+..||+|....+...        +..+..+......+-.+|++++|.+++.+
T Consensus        84 ~~~~~vi~Dr~~~s~~~~~~~~g~~~~~~~~~~~~~~~~d~vi~l~~~~e~~~~  137 (204)
T 2v54_A           84 EQGITLIVDRYAFSGVAYAAAKGASMTLSKSYESGLPKPDLVIFLESGSKEINR  137 (204)
T ss_dssp             HTTCEEEEESCHHHHHHHHHHTTCCHHHHHHHHTTSBCCSEEEEECCCHHHHTT
T ss_pred             HCCCEEEEECchhhHHHHHHccCCCHHHHHHHhcCCCCCCEEEEEeCCHHHHHh
Confidence            77888999964321100        22222222221233468999999998865

>3bwv_A Putative 5'(3')-deoxyribonucleotidase; NP_764060.1, deoxyribonucleotidase-like protein; HET: MSE; 1.55A {Staphylococcus epidermidis}

Probab=98.36  E-value=3.8e-07  Score=78.84  Aligned_cols=24  Identities=25%  Similarity=0.407  Sum_probs=22.0

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecC
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQ   79 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq   79 (369)
                      ++||+.+.|+.|++ +++++|+||.
T Consensus        70 ~~pg~~e~L~~L~~-~~~~~i~T~~   93 (180)
T 3bwv_A           70 VMPHAQEVVKQLNE-HYDIYIATAA   93 (180)
T ss_dssp             BCTTHHHHHHHHTT-TSEEEEEECC
T ss_pred             CCcCHHHHHHHHHh-cCCEEEEeCC
Confidence            68999999999998 4999999994

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.35  E-value=2.2e-06  Score=74.55  Aligned_cols=92  Identities=16%  Similarity=0.176  Sum_probs=60.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC--CcEEEeCCcchh---------------------HHHHHHHHHHHHhCCCcEEE
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL--NYTTVNRDTLGS---------------------WQKCVSVMKAALDSGLSVVV  328 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~--~~~~i~~D~~~~---------------------~~~~~~~~~~~l~~g~~vIi  328 (369)
                      ..+|+|+|+|||||||+++.|+...  +.++++.|.+..                     ++.+...+......|..+++
T Consensus         9 g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~   88 (191)
T 1zp6_A            9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGYFVIL   88 (191)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHHTSCEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhhhhcccccCCccchhhhhHHHHHHHHHHHHHHhccCCeEEE
Confidence            4689999999999999999999875  456888876421                     11111122223455667888


Q ss_pred             eCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         329 DNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       329 D~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      |.... ...+..+    ...+..+..+++.++.+++++|.
T Consensus        89 ~~~~~-~~~l~~~----~~~~~~~~~ls~~~~~~v~~~R~  123 (191)
T 1zp6_A           89 DGVVR-PDWLPAF----TALARPLHYIVLRTTAAEAIERC  123 (191)
T ss_dssp             CSCCC-TTTTHHH----HTTCSCEEEEEEECCHHHHHHHH
T ss_pred             eccCc-HHHHHHH----HhcCCCeEEEEecCCHHHHHHHH
Confidence            87542 2222222    22245567899999999998874

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.35  E-value=4.8e-07  Score=83.44  Aligned_cols=88  Identities=20%  Similarity=0.267  Sum_probs=57.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh-------------------HHHHHH-HHHHHHhC-CCcEEEeC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS-------------------WQKCVS-VMKAALDS-GLSVVVDN  330 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~-------------------~~~~~~-~~~~~l~~-g~~vIiD~  330 (369)
                      ...|+|+|+|||||||+++.|++.+++.+++.|.+..                   ++.... .+.+.+.. ...||.++
T Consensus        48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~~g~~i~~i~~~~ge~~fr~~e~~~l~~l~~~~~~~Via~G  127 (250)
T 3nwj_A           48 GRSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAMKGTSVAEIFEHFGESVFREKETEALKKLSLMYHQVVVSTG  127 (250)
T ss_dssp             TCCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHSTTSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCSSEEEECC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHhcCccHHHHHHHhCcHHHHHHHHHHHHHHHhhcCCcEEecC
Confidence            3579999999999999999999999999999887621                   112222 22333333 33444333


Q ss_pred             C--CCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         331 T--NPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       331 t--n~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      .  ......+..+    + .+   .+||+++|.+++.+|
T Consensus       128 gG~v~~~~~~~~l----~-~~---~vV~L~a~~e~l~~R  158 (250)
T 3nwj_A          128 GGAVIRPINWKYM----H-KG---ISIWLDVPLEALAHR  158 (250)
T ss_dssp             GGGGGSHHHHHHH----T-TS---EEEEEECCHHHHHHH
T ss_pred             CCeecCHHHHHHH----h-CC---cEEEEECCHHHHHHH
Confidence            2  2233333332    2 22   589999999999887

>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A

Probab=98.32  E-value=3.7e-06  Score=76.69  Aligned_cols=44  Identities=27%  Similarity=0.396  Sum_probs=36.1

Q ss_pred             ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCC
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQG   80 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~   80 (369)
                      .|+++|||||||+.+..            .+.+...++|++|+++|++++++|-.+
T Consensus         3 ~kli~~DlDGTLl~~~~------------~i~~~~~~al~~l~~~G~~~~~aTGR~   46 (258)
T 2pq0_A            3 RKIVFFDIDGTLLDEQK------------QLPLSTIEAVRRLKQSGVYVAIATGRA   46 (258)
T ss_dssp             CCEEEECTBTTTBCTTS------------CCCHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             ceEEEEeCCCCCcCCCC------------ccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            48999999999997642            146778899999999999999988643

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=98.29  E-value=5e-06  Score=74.66  Aligned_cols=97  Identities=15%  Similarity=0.132  Sum_probs=63.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC---CcEEEeCC----c-----ch-----------------------hHHHHHHHH
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL---NYTTVNRD----T-----LG-----------------------SWQKCVSVM  316 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~---~~~~i~~D----~-----~~-----------------------~~~~~~~~~  316 (369)
                      ..+|++.|++||||||+++.|++.+   +..++...    .     ++                       .++.+.+.+
T Consensus         6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~~~~i   85 (213)
T 4edh_A            6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLAGVI   85 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHHHTH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999998764   22222110    0     11                       012223445


Q ss_pred             HHHHhCCCcEEEeCC------------CCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         317 KAALDSGLSVVVDNT------------NPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       317 ~~~l~~g~~vIiD~t------------n~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      ..+++.|..||.|-.            ....+....+...+...-.+-.+++|++|++++.+|-
T Consensus        86 ~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri  149 (213)
T 4edh_A           86 RPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARA  149 (213)
T ss_dssp             HHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHH
T ss_pred             HHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHH
Confidence            667789999999953            2233444444444444456778999999999999884

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.27  E-value=2.8e-06  Score=75.14  Aligned_cols=89  Identities=15%  Similarity=0.179  Sum_probs=60.1

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC-CcEEEeCCcch--------------h--------HHHHHHHHHHHHh------
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL-NYTTVNRDTLG--------------S--------WQKCVSVMKAALD------  321 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~-~~~~i~~D~~~--------------~--------~~~~~~~~~~~l~------  321 (369)
                      ++.+|.++|+|||||||+++.|++.+ ++.++++|.+-              .        ...+.+.+...+.      
T Consensus        20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~~~~~~   99 (207)
T 2qt1_A           20 KTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQYDVLEALNMEKMMSAISCWMESARHSV   99 (207)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBCCGGGSCBCTTSCBCCSSGGGBCHHHHHHHHHHHHHHHTTSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCccccCHhHhhccccCCChhHHHHHhHHHHHHHHHHHHHhCCCCCC
Confidence            45789999999999999999999988 89999998761              0        1123333333332      


Q ss_pred             ---------CCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         322 ---------SGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       322 ---------~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                               ....||+|+..... .+ .+.      ...-.++++++|.+++.+|
T Consensus       100 ~~~~~~~~~~~~~vi~eg~~~~~-~~-~~~------~~~d~~i~l~~~~~~~~~R  146 (207)
T 2qt1_A          100 VSTDQESAEEIPILIIEGFLLFN-YK-PLD------TIWNRSYFLTIPYEECKRR  146 (207)
T ss_dssp             CCC-----CCCCEEEEECTTCTT-CG-GGT------TTCSEEEEEECCHHHHHHH
T ss_pred             cCCCeeecCCCCEEEEeehHHcC-cH-HHH------HhcCeeEEEECCHHHHHHH
Confidence                     24578899865431 11 111      1222689999999998877

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=98.26  E-value=1.5e-06  Score=82.96  Aligned_cols=37  Identities=16%  Similarity=0.393  Sum_probs=34.2

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      +|+.+|+|+|++||||||++..|++.++..+|+.|.+
T Consensus         3 ~m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~   39 (323)
T 3crm_A            3 SLPPAIFLMGPTAAGKTDLAMALADALPCELISVDSA   39 (323)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence            3678999999999999999999999999999999875

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=98.25  E-value=6.9e-06  Score=73.30  Aligned_cols=97  Identities=20%  Similarity=0.258  Sum_probs=61.7

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC--Cc--EEEe-CC-c-----ch---------------------hHHHHHHHHHH
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL--NY--TTVN-RD-T-----LG---------------------SWQKCVSVMKA  318 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~--~~--~~i~-~D-~-----~~---------------------~~~~~~~~~~~  318 (369)
                      |.++|++-|+.||||||.++.|++.+  +.  .... .. .     ++                     .++.+......
T Consensus         1 M~kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~~t~~g~~ir~~l~~~~~~~~~~~~lLf~a~R~~~~~~~i~p   80 (205)
T 4hlc_A            1 MSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGNDMDIRTEAMLFAASRREHLVLKVIP   80 (205)
T ss_dssp             -CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEESSTTCHHHHHHHHHHHSSCCCCHHHHHHHHHHHHHHHHHHTHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCCCChHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            45789999999999999999998765  22  2221 11 1     11                     01223344566


Q ss_pred             HHhCCCcEEEeCCC------------CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         319 ALDSGLSVVVDNTN------------PDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       319 ~l~~g~~vIiD~tn------------~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      ++..|..||.|-..            ...+....+...+...-.|=.++++++|++++.+|
T Consensus        81 ~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R  141 (205)
T 4hlc_A           81 ALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRER  141 (205)
T ss_dssp             HHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHH
T ss_pred             HHHcCCEEEecCcccchHHHHhccccchHHHHHHHHHHHhcCCCCCEEeeeCCCHHHHHHH
Confidence            78999999988532            23333334444443333455789999999999988

>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A* 2hf2_A

Probab=98.25  E-value=4.7e-06  Score=76.87  Aligned_cols=44  Identities=11%  Similarity=-0.022  Sum_probs=38.4

Q ss_pred             CCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         118 YRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       118 ~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      ..+|++..++.+++++    +++++++++|||+.                .|+.++..+|+.+.
T Consensus       188 ~~~~K~~~~~~l~~~l----~i~~~~~~~~GD~~----------------nD~~m~~~ag~~va  231 (271)
T 1rlm_A          188 PGLHKANGISRLLKRW----DLSPQNVVAIGDSG----------------NDAEMLKMARYSFA  231 (271)
T ss_dssp             TTCSHHHHHHHHHHHH----TCCGGGEEEEECSG----------------GGHHHHHHCSEEEE
T ss_pred             CCCChHHHHHHHHHHh----CCCHHHEEEECCcH----------------HHHHHHHHcCCeEE
Confidence            3678888899998886    78999999999998                89999999999753

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=98.24  E-value=1.8e-06  Score=78.83  Aligned_cols=97  Identities=21%  Similarity=0.235  Sum_probs=61.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC---Cc--EEEeCC---------------------cch-----------hHHHHHH
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL---NY--TTVNRD---------------------TLG-----------SWQKCVS  314 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~---~~--~~i~~D---------------------~~~-----------~~~~~~~  314 (369)
                      +.+|++.|++||||||+++.|++.+   +.  +.+...                     .+.           .++.+.+
T Consensus        27 ~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~e~lLf~A~R~~~~~~  106 (236)
T 3lv8_A           27 AKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVKEEHPGEELQDITELLLVYAARVQLVEN  106 (236)
T ss_dssp             CCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHHHHHHHHHHhhCCCcccCCHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999999998864   21  222110                     010           0122233


Q ss_pred             HHHHHHhCCCcEEEeCC------------CCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         315 VMKAALDSGLSVVVDNT------------NPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       315 ~~~~~l~~g~~vIiD~t------------n~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      .++.+++.|..||.|-.            ....+....+...+...-.+-.+++|++|++++.+|-
T Consensus       107 ~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlvi~Ldv~~e~~~~Ri  172 (236)
T 3lv8_A          107 VIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLTLYLDIDPKLGLERA  172 (236)
T ss_dssp             THHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHC-
T ss_pred             HHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHH
Confidence            45567889999999942            2233333344344433334667999999999999873

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=98.21  E-value=1e-06  Score=77.76  Aligned_cols=33  Identities=24%  Similarity=0.413  Sum_probs=30.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      ..|.++|++||||||+++.|++ +++.+++.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~   34 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKL   34 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHH
Confidence            4689999999999999999999 89999998875

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=98.20  E-value=5.1e-06  Score=75.72  Aligned_cols=92  Identities=16%  Similarity=0.202  Sum_probs=57.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchhH--------H----------------HHHHHHHHHHh--CCCc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSW--------Q----------------KCVSVMKAALD--SGLS  325 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~~--------~----------------~~~~~~~~~l~--~g~~  325 (369)
                      +.+|+|+|+|||||||+++.|++.++...++.+.+...        .                ...+.+...+.  .+..
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~~~~~~  106 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELENRRGQH  106 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTCTTSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCe
Confidence            57899999999999999999999888777776554110        0                01111222222  3456


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         326 VVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       326 vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      +|+|..........   .+....... .++++++|.+++.+|
T Consensus       107 ~il~g~~~~~~~~~---~l~~~~~~~-~vi~L~~~~~~~l~r  144 (246)
T 2bbw_A          107 WLLDGFPRTLGQAE---ALDKICEVD-LVISLNIPFETLKDR  144 (246)
T ss_dssp             EEEESCCCSHHHHH---HHHTTCCCC-EEEEEECCHHHHHHH
T ss_pred             EEEECCCCCHHHHH---HHHhhcCCC-EEEEEECCHHHHHHH
Confidence            78887544432111   222112333 578999999998876

>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*

Probab=97.51  E-value=1.8e-07  Score=86.56  Aligned_cols=83  Identities=16%  Similarity=0.249  Sum_probs=64.4

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|++|++.|++++|+||.+            ...+..+++.+|+.  |..++           |..+..++++
T Consensus       137 ~~~g~~~~l~~L~~~g~~~~i~T~~~------------~~~~~~~~~~~gl~~~f~~~~-----------p~~k~~~~~~  193 (263)
T 2yj3_A          137 PRPNLKDYLEKLKNEGLKIIILSGDK------------EDKVKELSKELNIQEYYSNLS-----------PEDKVRIIEK  193 (263)
Confidence            58999999999999999999999943            22345566777763  32221           4456777777


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF  180 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f  180 (369)
                      +    +.++++++||||+.                +|+.+|.++|+..
T Consensus       194 l----~~~~~~~~~VGD~~----------------~D~~aa~~Agv~v  221 (263)
T 2yj3_A          194 L----KQNGNKVLMIGDGV----------------NDAAALALADVSV  221 (263)
Confidence            5    67889999999998                8999999999864

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.19  E-value=1.4e-05  Score=70.02  Aligned_cols=89  Identities=17%  Similarity=0.200  Sum_probs=54.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-------------------hhHHHHH--------------------
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-------------------GSWQKCV--------------------  313 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-------------------~~~~~~~--------------------  313 (369)
                      .+|.|+|++||||||+++.|+...+...++....                   ..+....                    
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKALAEIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHYGTEK   87 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSSSEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEEEH
T ss_pred             cEEEEECcCCCCHHHHHHHHHhhCCCeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccccchH
Confidence            6899999999999999999987654333332111                   0122221                    


Q ss_pred             HHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         314 SVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       314 ~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      ..+.+.++.|..+|+|..   ...   +..+.........++...+|.++..+|
T Consensus        88 ~~i~~~l~~g~~vi~d~~---~~~---~~~~~~~~~~~~~v~~~~~~~e~l~~R  135 (205)
T 3tr0_A           88 DWVLRQLKAGRDVLLEID---WQG---ARQIRELFPPALSIFILPPSIEALRER  135 (205)
T ss_dssp             HHHHHHHHTTCEEEEECC---HHH---HHHHHHHCTTCEEEEEECSCHHHHHHH
T ss_pred             HHHHHHHHcCCeEEEEEC---HHH---HHHHHHhCCCcEEEEEECcCHHHHHHH
Confidence            356777888999999953   222   223333333334444445568887776

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=98.18  E-value=3.7e-06  Score=73.96  Aligned_cols=35  Identities=23%  Similarity=0.265  Sum_probs=32.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG  307 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~  307 (369)
                      .+|.++|++||||||+++.|++.+++.+++.|.+.
T Consensus         3 ~~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~   37 (208)
T 3ake_A            3 GIVTIDGPSASGKSSVARRVAAALGVPYLSSGLLY   37 (208)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCceeccchHH
Confidence            48999999999999999999999999999999874

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=98.17  E-value=7.6e-06  Score=77.45  Aligned_cols=38  Identities=24%  Similarity=0.391  Sum_probs=35.1

Q ss_pred             ccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         269 AALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       269 ~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      ..++.+|+++||+||||||++..|++.++..+|+.|.+
T Consensus         7 ~~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~   44 (316)
T 3foz_A            7 ASLPKAIFLMGPTASGKTALAIELRKILPVELISVDSA   44 (316)
T ss_dssp             CCCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTT
T ss_pred             CCCCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccc
Confidence            45678999999999999999999999999999999985

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=98.16  E-value=3.5e-06  Score=76.48  Aligned_cols=97  Identities=19%  Similarity=0.201  Sum_probs=60.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-------CcEEE-eC---Cc-----chh--------------------HHHHHHH
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-------NYTTV-NR---DT-----LGS--------------------WQKCVSV  315 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-------~~~~i-~~---D~-----~~~--------------------~~~~~~~  315 (369)
                      ..+|++.|++||||||+++.|++.+       +..++ ..   +.     ++.                    ++.+.+.
T Consensus        25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~llf~a~R~~~~~~~  104 (227)
T 3v9p_A           25 GKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLNQPMDLETEALLMFAGRREHLALV  104 (227)
T ss_dssp             CCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            3699999999999999999998875       32222 11   10     110                    1222334


Q ss_pred             HHHHHhCCCcEEEeCC------------CCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         316 MKAALDSGLSVVVDNT------------NPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       316 ~~~~l~~g~~vIiD~t------------n~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      ++.+++.|..||.|-.            +...+....+...+...-.+-.+++|++|++++.+|-
T Consensus       105 i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~e~~~~Ri  169 (227)
T 3v9p_A          105 IEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPPQIASARR  169 (227)
T ss_dssp             HHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCSSCGGGTT
T ss_pred             HHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHH
Confidence            5667889999999943            2333444444444444445778999999999998874

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.15  E-value=9.3e-07  Score=78.75  Aligned_cols=26  Identities=19%  Similarity=0.413  Sum_probs=23.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLN  297 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~  297 (369)
                      ..+|+|+||+||||||+++.|...++
T Consensus         8 g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            8 GLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            47899999999999999999998763

>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*

Probab=98.08  E-value=1.5e-05  Score=71.43  Aligned_cols=37  Identities=19%  Similarity=0.268  Sum_probs=32.9

Q ss_pred             ccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         269 AALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       269 ~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      ...+-.|-|+|.+||||||+++.|++ +|+.+|+.|.+
T Consensus         6 ~~~~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~i   42 (210)
T 4i1u_A            6 HHHMYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLI   42 (210)
T ss_dssp             CCSCCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHH
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHH
Confidence            34456899999999999999999998 99999999986

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=98.07  E-value=1.2e-05  Score=72.70  Aligned_cols=101  Identities=15%  Similarity=0.132  Sum_probs=54.8

Q ss_pred             hccccccEEEEEEcCCCCcHHHHHHHHhccCCc-----EEE-eC--Cc------ch---------------------hHH
Q psy4598         266 VMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNY-----TTV-NR--DT------LG---------------------SWQ  310 (369)
Q Consensus       266 ~~~~~~~~lIll~G~pGSGKSTla~~L~~~~~~-----~~i-~~--D~------~~---------------------~~~  310 (369)
                      .|....+.+|++.|++||||||+++.|++.++.     +.+ ..  +.      ++                     .++
T Consensus        15 ~~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~t~~g~~ir~~l~~~~~~~~~~e~llf~a~R~~   94 (223)
T 3ld9_A           15 QTQGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGGTLLNESVRNLLFKAQGLDSLSELLFFIAMRRE   94 (223)
T ss_dssp             ----CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCSSHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred             cccCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCCChHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence            444556789999999999999999999886532     222 11  10      10                     012


Q ss_pred             HHHHHHHHHHhCCCcEEEeCCCC------------CHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         311 KCVSVMKAALDSGLSVVVDNTNP------------DKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       311 ~~~~~~~~~l~~g~~vIiD~tn~------------~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      ...+.++.+++.|..||.|-...            ..+....+...+.. -.+=.++++++|.+++.+|
T Consensus        95 ~~~~~I~paL~~g~~VI~DRy~~S~~Ayq~~~~g~~~~~~~~l~~~~~~-~~PDl~I~Ldv~~e~~~~R  162 (223)
T 3ld9_A           95 HFVKIIKPSLMQKKIVICDRFIDSTIAYQGYGQGIDCSLIDQLNDLVID-VYPDITFIIDVDINESLSR  162 (223)
T ss_dssp             HHHHTHHHHHHTTCEEEEESCHHHHHHHHTTTTCCCHHHHHHHHHHHCS-SCCSEEEEEECC-------
T ss_pred             HHHHHHHHHHhcCCeEEEccchhhHHHhccccCCccHHHHHHHHHHhhc-CCCCeEEEEeCCHHHHHHH
Confidence            22233556788999999986421            12222223333332 3455799999999999887

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=98.03  E-value=1e-05  Score=72.62  Aligned_cols=95  Identities=18%  Similarity=0.240  Sum_probs=61.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC---Cc--EEEeCC-----------------------cch-----------hHHHHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL---NY--TTVNRD-----------------------TLG-----------SWQKCV  313 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~---~~--~~i~~D-----------------------~~~-----------~~~~~~  313 (369)
                      .+|++.|++||||||.++.|.+.+   +.  +++...                       .+.           .++.+.
T Consensus         4 ~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~~~e~lL~~A~R~~~~~   83 (213)
T 4tmk_A            4 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLVE   83 (213)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHhcccccccccCChHHHHHHHHHHHHHHHH
Confidence            689999999999999999998764   32  222111                       110           012223


Q ss_pred             HHHHHHHhCCCcEEEeCC------------CCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         314 SVMKAALDSGLSVVVDNT------------NPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       314 ~~~~~~l~~g~~vIiD~t------------n~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      +.++.+++.|..||.|-.            ....+....+...+...-.+-.++++++|++++.+|
T Consensus        84 ~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~R  149 (213)
T 4tmk_A           84 TVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKR  149 (213)
T ss_dssp             HTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHH
T ss_pred             HHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHH
Confidence            446677899999999953            223333333444444334567899999999999887

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=98.02  E-value=1e-05  Score=73.67  Aligned_cols=36  Identities=22%  Similarity=0.301  Sum_probs=33.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      ++.+|.+.|+|||||||+++.|++.+++.+++.|.+
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~   43 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM   43 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence            456899999999999999999999999999999886

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=98.01  E-value=6e-06  Score=73.38  Aligned_cols=87  Identities=10%  Similarity=0.066  Sum_probs=58.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh--------------H-------H------------------HHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS--------------W-------Q------------------KCV  313 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~--------------~-------~------------------~~~  313 (369)
                      .+|.|.|++||||||+++.|++.+++.+++.+.++.              +       .                  ...
T Consensus         7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D~~~~~~~a~~~g~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~   86 (201)
T 3fdi_A            7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYSKELLDEVAKDGRYSKEVLERFDEKPMNFAFIPVPAGGTTISLEQDIAIRQ   86 (201)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHTTCCEECHHHHHHTTCC---------------------------------CHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHhCcCEECHHHHHHHHHhcCCCHHHHHHHhhhchhHHHHHhccccccccccHHHHHHH
Confidence            589999999999999999999999999998554320              0       0                  011


Q ss_pred             HHHHHHHh--CCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         314 SVMKAALD--SGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       314 ~~~~~~l~--~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      ..+...+.  ...++|+++....      +  +.+.. -....||+++|.++..+|-
T Consensus        87 ~~~i~~la~~~~~~~Vi~Gr~g~------~--vl~~~-~~~~~V~L~A~~e~r~~R~  134 (201)
T 3fdi_A           87 FNFIRKKANEEKESFVIVGRCAE------E--ILSDN-PNMISAFILGDKDTKTKRV  134 (201)
T ss_dssp             HHHHHHHHHTSCCCEEEESTTHH------H--HTTTC-TTEEEEEEEECHHHHHHHH
T ss_pred             HHHHHHHHhhcCCCEEEEECCcc------h--hcCCC-CCeEEEEEECCHHHHHHHH
Confidence            22222234  4557888876421      1  11221 2367899999999988873

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.01  E-value=3.2e-05  Score=67.73  Aligned_cols=26  Identities=15%  Similarity=0.342  Sum_probs=23.2

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      ...+|.|+|+|||||||+++.|+..+
T Consensus         5 ~g~~i~l~G~~GsGKSTl~~~L~~~~   30 (207)
T 2j41_A            5 KGLLIVLSGPSGVGKGTVRKRIFEDP   30 (207)
T ss_dssp             CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            34689999999999999999998875

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.99  E-value=5.7e-06  Score=71.81  Aligned_cols=25  Identities=20%  Similarity=0.521  Sum_probs=22.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      ..+++|+||+||||||+++.|....
T Consensus         5 g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            5 RKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3689999999999999999998754

>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics, UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18

Probab=97.97  E-value=7.8e-06  Score=67.07  Aligned_cols=50  Identities=28%  Similarity=0.417  Sum_probs=39.2

Q ss_pred             eEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCC
Q psy4598          26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGA   81 (369)
Q Consensus        26 k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~g   81 (369)
                      |+++|||||||+.+..+ .|    .+. .+.|++.++|++|+++|++++|+|+.+.
T Consensus         2 k~i~~DlDGTL~~~~~~-~~----~~~-~~~~~~~~~l~~l~~~Gi~~~iaTGR~~   51 (126)
T 1xpj_A            2 KKLIVDLDGTLTQANTS-DY----RNV-LPRLDVIEQLREYHQLGFEIVISTARNM   51 (126)
T ss_dssp             CEEEECSTTTTBCCCCS-CG----GGC-CBCHHHHHHHHHHHHTTCEEEEEECTTT
T ss_pred             CEEEEecCCCCCCCCCC-cc----ccC-CCCHHHHHHHHHHHhCCCeEEEEeCCCh
Confidence            78999999999975432 12    111 2578999999999999999999999753

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=97.95  E-value=6.6e-05  Score=66.37  Aligned_cols=95  Identities=21%  Similarity=0.248  Sum_probs=60.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccC---CcEEE-eCC----cc----h-------------------hHHHHHHHHHHHHhC
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPL---NYTTV-NRD----TL----G-------------------SWQKCVSVMKAALDS  322 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~---~~~~i-~~D----~~----~-------------------~~~~~~~~~~~~l~~  322 (369)
                      +|++-|+.||||||.++.|++.+   +..++ ...    .+    +                   ...........++..
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~~~~~ir~~l~~~~~~~~~~~ll~~a~r~~~~~~I~~~L~~   81 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEEVTPKAELFLFLASRNLLVTEIKQYLSE   81 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCcHHHHHHHHhhcccCChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence            68899999999999999998764   32222 111    11    0                   012234556677889


Q ss_pred             CCcEEEeCCC------------CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         323 GLSVVVDNTN------------PDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       323 g~~vIiD~tn------------~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      |..||.|-..            ...+.-..+...+...-.+-..+++++|++++.+|.
T Consensus        82 g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl~i~Ld~~~e~~~~R~  139 (197)
T 3hjn_A           82 GYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDLTFYIDVDVETALKRK  139 (197)
T ss_dssp             TCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHC
T ss_pred             CCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCceeecCcChHHHHHhC
Confidence            9999998542            222333333333433334667899999999999884

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=97.94  E-value=9.7e-06  Score=74.65  Aligned_cols=31  Identities=23%  Similarity=0.336  Sum_probs=27.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-CcEEEe
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-NYTTVN  302 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-~~~~i~  302 (369)
                      +.+|+|.|++||||||+++.|++.+ ++.++.
T Consensus        24 ~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~   55 (263)
T 1p5z_B           24 IKKISIEGNIAAGKSTFVNILKQLCEDWEVVP   55 (263)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGCTTEEEEC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCCEEEe
Confidence            5799999999999999999999998 566663

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.93  E-value=1.9e-05  Score=69.40  Aligned_cols=88  Identities=19%  Similarity=0.300  Sum_probs=51.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCC-----------------------cEEEeCCcchh-----------------HHHHH
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLN-----------------------YTTVNRDTLGS-----------------WQKCV  313 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~-----------------------~~~i~~D~~~~-----------------~~~~~  313 (369)
                      .|+|+||+||||||+.+.|.+..+                       +.+++.+.+..                 |-...
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~~   82 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTV   82 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEEH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeeec
Confidence            489999999999999999986542                       11222222210                 11124


Q ss_pred             HHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEE-eCCHHHHHHH
Q psy4598         314 SVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHM-NISKEHAKHN  367 (369)
Q Consensus       314 ~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l-~~~~e~~~~R  367 (369)
                      ..+...+++|+.||+|-.   .+.-..   +-+..+.....|++ .++.++..+|
T Consensus        83 ~~v~~~l~~g~~vil~id---~~g~~~---~k~~~~~~~~~Ifi~pps~e~L~~R  131 (186)
T 1ex7_A           83 ASVKQVSKSGKTCILDID---MQGVKS---VKAIPELNARFLFIAPPSVEDLKKR  131 (186)
T ss_dssp             HHHHHHHHHTSEEEEECC---HHHHHH---HHTCGGGCCEEEEEECSCHHHHHHH
T ss_pred             ceeeehhhCCCEEEecCC---HHHHHH---HHHhcccCceEEEEeCCCHHHHHHH
Confidence            567778899999999953   232222   22223433344444 5556777666

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.93  E-value=4.4e-05  Score=69.98  Aligned_cols=35  Identities=20%  Similarity=0.451  Sum_probs=32.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG  307 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~  307 (369)
                      .+|.|+|++||||||+++.|++.+++.+++.+.+.
T Consensus        28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~   62 (252)
T 4e22_A           28 PVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY   62 (252)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence            58999999999999999999999999999887753

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=97.91  E-value=2.4e-05  Score=74.21  Aligned_cols=35  Identities=20%  Similarity=0.393  Sum_probs=33.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      +.+|+++||+||||||++..|++.++..+||.|.+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~   37 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM   37 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence            46899999999999999999999999999999986

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.90  E-value=1.4e-06  Score=77.12  Aligned_cols=23  Identities=22%  Similarity=0.489  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccC
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      +|+|.|++||||||+++.|++.+
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l   24 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAF   24 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHH
Confidence            78999999999999999998865

>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}

Probab=97.90  E-value=2.4e-05  Score=70.67  Aligned_cols=35  Identities=17%  Similarity=0.208  Sum_probs=32.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      +.+|.+.|++||||||+++.|++.+++.+++.|.+
T Consensus        14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~   48 (223)
T 3hdt_A           14 NLIITIEREYGSGGRIVGKKLAEELGIHFYDDDIL   48 (223)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHH
Confidence            36899999999999999999999999999998876

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.89  E-value=5.2e-05  Score=68.53  Aligned_cols=38  Identities=18%  Similarity=0.258  Sum_probs=33.8

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG  307 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~  307 (369)
                      ..+.+|.|+|++||||||+++.|++.+++.+++.|.+.
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~   51 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMY   51 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCee
Confidence            34468999999999999999999999999999998864

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.84  E-value=6.9e-06  Score=71.89  Aligned_cols=35  Identities=26%  Similarity=0.374  Sum_probs=32.1

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      .+.+|.|+|++||||||+++.|++. ++.+++.|.+
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~   41 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDAL   41 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHH
Confidence            3578999999999999999999998 9999999976

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.79  E-value=1.2e-05  Score=70.99  Aligned_cols=38  Identities=24%  Similarity=0.218  Sum_probs=30.3

Q ss_pred             ccccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcc
Q psy4598         269 AALDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTL  306 (369)
Q Consensus       269 ~~~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~  306 (369)
                      ...+.+|.++|++||||||+++.|...+     .+.+++.|.+
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~   61 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH   61 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence            4456899999999999999999998743     3556677765

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.78  E-value=1.6e-05  Score=76.27  Aligned_cols=36  Identities=19%  Similarity=0.385  Sum_probs=33.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      |+.+|+|+|++||||||+|..|++.++..+|+.|.+
T Consensus         6 m~~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~   41 (340)
T 3d3q_A            6 KPFLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM   41 (340)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred             CCceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence            457999999999999999999999999999999986

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.76  E-value=9.4e-06  Score=72.50  Aligned_cols=36  Identities=17%  Similarity=0.411  Sum_probs=32.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG  307 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~  307 (369)
                      +..|.|+|+|||||||+++.|++.+++.+++.|.+.
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~   40 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIY   40 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCccee
Confidence            357999999999999999999999999999998864

>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET: 1PE; 1.83A {Saccharomyces cerevisiae EC1118}

Probab=97.73  E-value=7.4e-06  Score=73.07  Aligned_cols=104  Identities=16%  Similarity=0.193  Sum_probs=72.7

Q ss_pred             CCceEEEEecCCceeecCCCCCCCCCcccc-ccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHH
Q psy4598          23 NSAKIASFDLDGTLITTKSGKVFPVDTHDW-KLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIK  101 (369)
Q Consensus        23 ~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~-~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~  101 (369)
                      .+.+.+.+|||+||+.+....   .  ..| ...-||+.+.|+.+. ++|.|+|+|...            +..++.+++
T Consensus        32 ~~~~tLVLDLDeTLvh~~~~~---~--~~~~v~~RPgl~eFL~~l~-~~yeivI~Tas~------------~~ya~~vl~   93 (204)
T 3qle_A           32 QRPLTLVITLEDFLVHSEWSQ---K--HGWRTAKRPGADYFLGYLS-QYYEIVLFSSNY------------MMYSDKIAE   93 (204)
T ss_dssp             CCSEEEEEECBTTTEEEEEET---T--TEEEEEECTTHHHHHHHHT-TTEEEEEECSSC------------HHHHHHHHH
T ss_pred             CCCeEEEEeccccEEeeeccc---c--CceeEEeCCCHHHHHHHHH-hCCEEEEEcCCc------------HHHHHHHHH
Confidence            456899999999999875311   1  123 346899999999998 789999999842            445677778


Q ss_pred             HcCC---CeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCcc
Q psy4598         102 SLNV---PVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAA  151 (369)
Q Consensus       102 ~l~i---~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~  151 (369)
                      .++.   .|...+..+.|.+   ..|.+...++.    ++.+++++++|-|+.
T Consensus        94 ~LDp~~~~f~~rl~R~~c~~---~~g~y~KdL~~----Lgrdl~~vIiIDDsp  139 (204)
T 3qle_A           94 KLDPIHAFVSYNLFKEHCVY---KDGVHIKDLSK----LNRDLSKVIIIDTDP  139 (204)
T ss_dssp             HTSTTCSSEEEEECGGGSEE---ETTEEECCGGG----SCSCGGGEEEEESCT
T ss_pred             HhCCCCCeEEEEEEecceeE---ECCeeeecHHH----hCCChHHEEEEECCH
Confidence            7775   3665454444433   23444444444    367899999999998

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.70  E-value=1.8e-05  Score=70.49  Aligned_cols=34  Identities=24%  Similarity=0.524  Sum_probs=30.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      +.+|.|+|++||||||+++.|++ +++.+++.|.+
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~   37 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD-LGINVIDADII   37 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHH
Confidence            57899999999999999999998 89999998764

>2jc9_A Cytosolic purine 5'-nucleotidase; cytosolic 5-prime nucleotidase II, GMP-IMP specific nucleotidase, CN-II, NT5C2, hydrolase, polymorphism; HET: ADN; 1.5A {Homo sapiens} PDB: 2j2c_A* 2xje_A* 2xjf_A* 2jcm_A* 2xcw_A* 2xcv_A* 2xcx_A 2xjb_A* 2xjc_A* 2xjd_A*

Probab=97.66  E-value=8.5e-05  Score=74.96  Aligned_cols=93  Identities=18%  Similarity=0.195  Sum_probs=67.4

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHc-CC---------------CeEEEEecCCCCC
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSL-NV---------------PVQMFVATQYDRY  118 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l-~i---------------~~~~~~~~~~~~~  118 (369)
                      ..|++++.|++|++.| +++++||..         .++.   ..+++.+ |+               .|+++++.    .
T Consensus       247 kdp~l~~~L~~Lr~~G-KlfLiTNS~---------~~yv---~~~m~yllg~~~~~~~~~~~~dWrdlFD~vI~~----A  309 (555)
T 2jc9_A          247 KDGKLPLLLSRMKEVG-KVFLATNSD---------YKYT---DKIMTYLFDFPHGPKPGSSHRPWQSYFDLILVD----A  309 (555)
T ss_dssp             CCTHHHHHHHHHHHHS-EEEEECSSC---------HHHH---HHHHHHHTCSSSSSSTTSCCCCGGGGCSEEEES----C
T ss_pred             CChHHHHHHHHHHHcC-CEEEEeCCC---------hHHH---HHHHHHhcCCCccccccccccchhhhCCEEEEe----C
Confidence            4578999999999999 999999932         3333   3333333 53               25765553    4


Q ss_pred             CCCchhH----------------------------------HHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCC
Q psy4598         119 RKPVPGM----------------------------------WEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKD  164 (369)
Q Consensus       119 rKP~~gm----------------------------------~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d  164 (369)
                      +||..--                                  +..+.+.+    ++..++++||||..             
T Consensus       310 ~KP~FF~~~~pfr~Vd~~tg~l~~~~~~~~l~~g~vY~gGn~~~~~~ll----g~~g~eVLYVGDhI-------------  372 (555)
T 2jc9_A          310 RKPLFFGEGTVLRQVDTKTGKLKIGTYTGPLQHGIVYSGGSSDTICDLL----GAKGKDILYIGDHI-------------  372 (555)
T ss_dssp             CTTGGGTTCCCEEEEETTTTEECSSCCCSCCCTTCCEEECCHHHHHHHH----TCCGGGEEEEESCC-------------
T ss_pred             CCCCcccCCCcceEeecCCCccccccccccccCCceeccCCHHHHHHHh----CCCCCeEEEECCEe-------------
Confidence            5665322                                  57777775    67889999999998             


Q ss_pred             CCcccHHHHH-hCCCCccCc
Q psy4598         165 FACTDHLFAF-NLNLAFFTP  183 (369)
Q Consensus       165 ~s~~D~~~A~-n~Gi~f~~p  183 (369)
                        .+||..|+ ..|++++..
T Consensus       373 --ftDIl~~kk~~GWrTiLV  390 (555)
T 2jc9_A          373 --FGDILKSKKRQGWRTFLV  390 (555)
T ss_dssp             --CCCCHHHHHHHCCEEEEE
T ss_pred             --hHhHHhHHhhcCeEEEEE
Confidence              39999997 999999543

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=97.56  E-value=0.00011  Score=71.91  Aligned_cols=35  Identities=26%  Similarity=0.513  Sum_probs=32.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      +.+|+++||+||||||++..|++.++..+|+.|.+
T Consensus         2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~   36 (409)
T 3eph_A            2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSM   36 (409)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTT
T ss_pred             CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCcc
Confidence            36899999999999999999999999999999873

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.49  E-value=0.00082  Score=60.31  Aligned_cols=89  Identities=18%  Similarity=0.259  Sum_probs=58.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCC-------cEEEeCCc-------c-------hhHHHH-------------------
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLN-------YTTVNRDT-------L-------GSWQKC-------------------  312 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~-------~~~i~~D~-------~-------~~~~~~-------------------  312 (369)
                      .+++|+||+||||||+.+.|.....       ..+...+.       +       ..+...                   
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~~~yg~   96 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYGT   96 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred             cEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHhccCCC
Confidence            6899999999999999999986543       11111110       0       001110                   


Q ss_pred             -HHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         313 -VSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       313 -~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                       .+.+.++++.|..+|+|   ++...+..+.++..   -.+.++....+.+++.+|
T Consensus        97 ~~~~v~~~l~~G~illLD---LD~~~~~~i~~~l~---~~~tI~i~th~~~~l~~R  146 (219)
T 1s96_A           97 SREAIEQVLATGVDVFLD---IDWQGAQQIRQKMP---HARSIFILPPSKIELDRR  146 (219)
T ss_dssp             EHHHHHHHHTTTCEEEEE---CCHHHHHHHHHHCT---TCEEEEEECSSHHHHHHH
T ss_pred             CHHHHHHHHhcCCeEEEE---ECHHHHHHHHHHcc---CCEEEEEECCCHHHHHHH
Confidence             23467788899999999   88888888887665   134455555566766654

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.49  E-value=0.00019  Score=63.48  Aligned_cols=27  Identities=26%  Similarity=0.432  Sum_probs=23.3

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCC
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLN  297 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~  297 (369)
                      ..++|+|+||+||||||+.+.|.+...
T Consensus        18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           18 GRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            347999999999999999999987653

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=97.49  E-value=3.5e-05  Score=68.43  Aligned_cols=35  Identities=17%  Similarity=0.268  Sum_probs=32.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      +.+|.|+|+|||||||+++.|++.+++.+++.|.+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~   37 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAM   37 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChH
Confidence            35799999999999999999999999999999886

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=97.48  E-value=0.00021  Score=64.67  Aligned_cols=29  Identities=28%  Similarity=0.387  Sum_probs=25.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-CcEE
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-NYTT  300 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-~~~~  300 (369)
                      +.+|++.|++||||||+++.|++.+ ++.+
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l~~~~~   31 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHV   31 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHcCCCee
Confidence            5789999999999999999999987 4443

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.47  E-value=5.8e-05  Score=66.60  Aligned_cols=37  Identities=19%  Similarity=0.284  Sum_probs=31.6

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccCC--cEEEeCCcc
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPLN--YTTVNRDTL  306 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~~--~~~i~~D~~  306 (369)
                      ..+.+|.|+|++||||||+++.|+..++  +.++++|.+
T Consensus         4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~   42 (211)
T 3asz_A            4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMDHY   42 (211)
T ss_dssp             -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGC
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCcc
Confidence            3457899999999999999999999877  888888764

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=97.46  E-value=4.4e-05  Score=68.66  Aligned_cols=96  Identities=14%  Similarity=0.213  Sum_probs=59.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCc--EEEe-C--Cc-----chh----------------------HHHHHHHHHHH
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNY--TTVN-R--DT-----LGS----------------------WQKCVSVMKAA  319 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~--~~i~-~--D~-----~~~----------------------~~~~~~~~~~~  319 (369)
                      ..+|++.|++||||||+++.|++.++.  ..+. .  +.     ++.                      ++ ..+.+..+
T Consensus         5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ep~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~-~~~~I~pa   83 (216)
T 3tmk_A            5 GKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWE-IVDKIKKD   83 (216)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHHHCSSEEEEESSCTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHT-THHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhcccceEEEecCCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHH-HHHHHHHH
Confidence            469999999999999999999998753  2222 1  11     110                      11 12345567


Q ss_pred             HhCCCcEEEeCCCCCHHH-----------HHHHHHHHHhcCCeEEEEEE-eCCHHHHHHHc
Q psy4598         320 LDSGLSVVVDNTNPDKES-----------RHRYIEAAKQHGVRCIAVHM-NISKEHAKHNI  368 (369)
Q Consensus       320 l~~g~~vIiD~tn~~~~~-----------r~~~~~la~~~~~~v~~v~l-~~~~e~~~~Rn  368 (369)
                      ++.|..||.|-...+.-.           ...+..++...-.|=..+++ ++|++++.+|.
T Consensus        84 L~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PDlti~L~dv~pe~~~~R~  144 (216)
T 3tmk_A           84 LLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAEKS  144 (216)
T ss_dssp             HHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECSCCSCGGGCC
T ss_pred             HHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCCEEEEEeCCCHHHHHHHh
Confidence            789999999865322111           11122222111235578999 99999998874

>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A

Probab=97.44  E-value=0.00016  Score=65.77  Aligned_cols=41  Identities=17%  Similarity=0.362  Sum_probs=33.7

Q ss_pred             ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecC
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQ   79 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq   79 (369)
                      .|+++||+||||+ +.  .           ..+.+.++|++|+++|++++|+|+.
T Consensus         2 ikli~~DlDGTLl-~~--~-----------~~~~~~~~l~~l~~~g~~~~i~Tgr   42 (249)
T 2zos_A            2 IRLIFLDIDKTLI-PG--Y-----------EPDPAKPIIEELKDMGFEIIFNSSK   42 (249)
T ss_dssp             EEEEEECCSTTTC-TT--S-----------CSGGGHHHHHHHHHTTEEEEEBCSS
T ss_pred             ccEEEEeCCCCcc-CC--C-----------CcHHHHHHHHHHHHCCCEEEEEeCC
Confidence            4899999999999 32  1           1244889999999999999999984

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=97.42  E-value=0.00011  Score=74.25  Aligned_cols=59  Identities=8%  Similarity=0.161  Sum_probs=45.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCc-------EEEeCCcchhHHHHHHHHHHHHhCCCcEEEeCCCC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNY-------TTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNP  333 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~-------~~i~~D~~~~~~~~~~~~~~~l~~g~~vIiD~tn~  333 (369)
                      ..+|+|+|+|||||||+|++|++.++.       .+++.|.-   ..+...+...++.|..||+...+.
T Consensus       395 ~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~~---~ei~~va~~~~~~G~~Vv~~~~sp  460 (511)
T 1g8f_A          395 GFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNNK---TELLSLIQDFIGSGSGLIIPDQWE  460 (511)
T ss_dssp             CEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTTC---HHHHTTHHHHHHTTCEEEESSCCC
T ss_pred             ceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCCc---HHHHHHHHHHHhcCCeEEEecCCH
Confidence            478999999999999999999999874       78999981   123334555667887777776654

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=97.41  E-value=0.00021  Score=64.14  Aligned_cols=25  Identities=24%  Similarity=0.493  Sum_probs=16.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHh-ccC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYL-KPL  296 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~-~~~  296 (369)
                      ..+|.|+|++||||||+++.|+ ...
T Consensus        27 G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           27 GVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCEEEEECSCC----CHHHHHHC---
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            4689999999999999999999 543

>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}

Probab=97.40  E-value=0.00015  Score=70.45  Aligned_cols=108  Identities=17%  Similarity=0.158  Sum_probs=66.8

Q ss_pred             CCCceEEEEecCCceeecCCCC----------C----CCCCccc--------------cccccccHHHHHHHHHHCCcEE
Q psy4598          22 CNSAKIASFDLDGTLITTKSGK----------V----FPVDTHD--------------WKLLFSNIESVLKQYLDDGYKL   73 (369)
Q Consensus        22 ~~~~k~~~fDlDgTLi~~~sg~----------~----~~~~~~d--------------~~~~~p~v~~~L~~L~~~G~~i   73 (369)
                      ..+.+.++|||||||+.+....          .    +..+..+              +..+-||+.+.|+++. ++|.|
T Consensus        15 ~~~k~~LVlDLD~TLvhS~~~~~~~~w~~~~~~~~~~~~~dv~~f~~~~~~~~~~~~~~v~~RPg~~eFL~~l~-~~yei   93 (372)
T 3ef0_A           15 QEKRLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYYIKFRPGLAQFLQKIS-ELYEL   93 (372)
T ss_dssp             HHTCEEEEECCBTTTEEEECCTHHHHHHTCTTSTTTGGGTTCEEEEEEETTTTEEEEEEEEECTTHHHHHHHHH-TTEEE
T ss_pred             hCCCCEEEEcCCCCcccccCcCccchhhccCCCCchhhhhhhhceeeeeccCCceEEEEEEECcCHHHHHHHHh-cCcEE
Confidence            3567899999999999983210          0    0011111              1234699999999998 88999


Q ss_pred             EEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC---CeE-EEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeC
Q psy4598          74 VIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV---PVQ-MFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGD  149 (369)
Q Consensus        74 ~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i---~~~-~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD  149 (369)
                      +|+|+..            ......+++.++.   .|. .+++.+.+.      .++..-++.+   ++.+++++++|-|
T Consensus        94 vI~Tas~------------~~yA~~vl~~LDp~~~~f~~ri~sr~~~g------~~~~KdL~~L---~~~dl~~viiiDd  152 (372)
T 3ef0_A           94 HIYTMGT------------KAYAKEVAKIIDPTGKLFQDRVLSRDDSG------SLAQKSLRRL---FPCDTSMVVVIDD  152 (372)
T ss_dssp             EEECSSC------------HHHHHHHHHHHCTTSCSSSSCEECTTTSS------CSSCCCGGGT---CSSCCTTEEEEES
T ss_pred             EEEeCCc------------HHHHHHHHHHhccCCceeeeEEEEecCCC------CcceecHHHh---cCCCCceEEEEeC
Confidence            9999943            2345556666654   354 344443332      1222222221   2578999999999


Q ss_pred             cc
Q psy4598         150 AA  151 (369)
Q Consensus       150 ~~  151 (369)
                      +.
T Consensus       153 ~~  154 (372)
T 3ef0_A          153 RG  154 (372)
T ss_dssp             CS
T ss_pred             CH
Confidence            97

>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10

Probab=97.36  E-value=0.00025  Score=65.51  Aligned_cols=57  Identities=18%  Similarity=0.279  Sum_probs=42.7

Q ss_pred             ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcC
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLN  104 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~  104 (369)
                      .|+++||+||||+....            ...+...++|++|+++|++++|+|..+        ..    .+..+++.++
T Consensus         9 ~~li~~DlDGTLl~~~~------------~~~~~~~~~l~~l~~~G~~~~iaTGR~--------~~----~~~~~~~~l~   64 (275)
T 1xvi_A            9 PLLVFSDLDGTLLDSHS------------YDWQPAAPWLTRLREANVPVILCSSKT--------SA----EMLYLQKTLG   64 (275)
T ss_dssp             CEEEEEECTTTTSCSSC------------CSCCTTHHHHHHHHHTTCCEEEECSSC--------HH----HHHHHHHHTT
T ss_pred             ceEEEEeCCCCCCCCCC------------cCCHHHHHHHHHHHHCCCeEEEEcCCC--------HH----HHHHHHHHcC
Confidence            58999999999986421            134667899999999999999999742        22    3445567777


Q ss_pred             C
Q psy4598         105 V  105 (369)
Q Consensus       105 i  105 (369)
                      +
T Consensus        65 ~   65 (275)
T 1xvi_A           65 L   65 (275)
T ss_dssp             C
T ss_pred             C
Confidence            6

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=97.33  E-value=0.00094  Score=62.18  Aligned_cols=87  Identities=18%  Similarity=0.243  Sum_probs=53.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC---------CcEEEeCCcch-----hH-HHHHHHHHHHHhCCCcEEEeCCC----
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL---------NYTTVNRDTLG-----SW-QKCVSVMKAALDSGLSVVVDNTN----  332 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~---------~~~~i~~D~~~-----~~-~~~~~~~~~~l~~g~~vIiD~tn----  332 (369)
                      ..-++|.|+||+|||++|+.+++.+         .+..++...+.     .. .........+  .+..++||...    
T Consensus        67 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~--~~~vl~iDEid~l~~  144 (309)
T 3syl_A           67 TLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA--MGGVLFIDEAYYLYR  144 (309)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHH--TTSEEEEETGGGSCC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhc--CCCEEEEEChhhhcc
Confidence            3568999999999999999888764         45566655541     11 1122222222  35577788653    


Q ss_pred             ------CCHHHHHHHHHHHHhcCCeEEEEEEeCC
Q psy4598         333 ------PDKESRHRYIEAAKQHGVRCIAVHMNIS  360 (369)
Q Consensus       333 ------~~~~~r~~~~~la~~~~~~v~~v~l~~~  360 (369)
                            ........+..........+.++....+
T Consensus       145 ~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~  178 (309)
T 3syl_A          145 PDNERDYGQEAIEILLQVMENNRDDLVVILAGYA  178 (309)
T ss_dssp             CC---CCTHHHHHHHHHHHHHCTTTCEEEEEECH
T ss_pred             CCCcccccHHHHHHHHHHHhcCCCCEEEEEeCCh
Confidence                  2455566777777766555555555433

>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10

Probab=97.33  E-value=0.00041  Score=64.27  Aligned_cols=42  Identities=36%  Similarity=0.512  Sum_probs=36.0

Q ss_pred             ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEec
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTN   78 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TN   78 (369)
                      .|+++|||||||+.+..            .+.+...++|++|+++|+.++++|.
T Consensus         4 ikli~~DlDGTLl~~~~------------~i~~~~~~al~~l~~~G~~~~iaTG   45 (288)
T 1nrw_A            4 MKLIAIDLDGTLLNSKH------------QVSLENENALRQAQRDGIEVVVSTG   45 (288)
T ss_dssp             CCEEEEECCCCCSCTTS------------CCCHHHHHHHHHHHHTTCEEEEECS
T ss_pred             eEEEEEeCCCCCCCCCC------------ccCHHHHHHHHHHHHCCCEEEEEeC
Confidence            58999999999997542            1567889999999999999999996

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=97.30  E-value=0.0013  Score=57.03  Aligned_cols=84  Identities=13%  Similarity=0.184  Sum_probs=50.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccC-------CcEEEeCCcchhHHHHHHHHHHHHh-------CCCcEEEeCCC-CCHHHH
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPL-------NYTTVNRDTLGSWQKCVSVMKAALD-------SGLSVVVDNTN-PDKESR  338 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~-------~~~~i~~D~~~~~~~~~~~~~~~l~-------~g~~vIiD~tn-~~~~~r  338 (369)
                      .+++.|+||+|||++++.+++.+       .+..++...................       ....+|+|... ......
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~  119 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQ  119 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHH
Confidence            38999999999999999998753       2455555444333333333333332       23357788754 355566


Q ss_pred             HHHHHHHHhcCCeEEEEEE
Q psy4598         339 HRYIEAAKQHGVRCIAVHM  357 (369)
Q Consensus       339 ~~~~~la~~~~~~v~~v~l  357 (369)
                      ..+..+.......+.++..
T Consensus       120 ~~l~~~l~~~~~~~~~i~~  138 (226)
T 2chg_A          120 AALRRTMEMYSKSCRFILS  138 (226)
T ss_dssp             HHHHHHHHHTTTTEEEEEE
T ss_pred             HHHHHHHHhcCCCCeEEEE
Confidence            6677766665444544444

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=97.29  E-value=0.0012  Score=56.47  Aligned_cols=74  Identities=16%  Similarity=0.160  Sum_probs=46.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC------CcEEEeCCcch-hHHHHH-----HHHHHHHhCCCcEEEeCCC---CCHH
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL------NYTTVNRDTLG-SWQKCV-----SVMKAALDSGLSVVVDNTN---PDKE  336 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~------~~~~i~~D~~~-~~~~~~-----~~~~~~l~~g~~vIiD~tn---~~~~  336 (369)
                      ...++|.|+|||||||+++.++...      .+.+++...+. .+....     ..+.+.+.....+|+|...   .+.+
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~~~~~~  117 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSERLSDW  117 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSSCCCHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCCcCCHH
Confidence            5688999999999999999997653      34555554432 111111     1223344556678899764   5677


Q ss_pred             HHHHHHHHH
Q psy4598         337 SRHRYIEAA  345 (369)
Q Consensus       337 ~r~~~~~la  345 (369)
                      .+..+.++.
T Consensus       118 ~~~~l~~ll  126 (180)
T 3ec2_A          118 QRELISYII  126 (180)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777665544

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.29  E-value=5.3e-05  Score=71.10  Aligned_cols=36  Identities=19%  Similarity=0.410  Sum_probs=29.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCC-----cEEEeCCcch
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLN-----YTTVNRDTLG  307 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~-----~~~i~~D~~~  307 (369)
                      +.+|.++|++||||||+++.|++.++     +.+|+.|.+.
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~   45 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH   45 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence            46899999999999999999999765     7899999875

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.24  E-value=0.00071  Score=60.79  Aligned_cols=32  Identities=22%  Similarity=0.345  Sum_probs=26.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEe
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVN  302 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~  302 (369)
                      ...+|.+.|++||||||+++.|+...+-+.+.
T Consensus        19 ~g~~i~i~G~~GsGKSTl~~~L~~~~g~v~~~   50 (230)
T 2vp4_A           19 QPFTVLIEGNIGSGKTTYLNHFEKYKNDICLL   50 (230)
T ss_dssp             CCEEEEEECSTTSCHHHHHHTTGGGTTTEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhccCCeEEE
Confidence            34799999999999999999999875434444

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=97.21  E-value=0.0012  Score=65.23  Aligned_cols=37  Identities=24%  Similarity=0.357  Sum_probs=30.2

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG  307 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~  307 (369)
                      .+.+|+++|++||||||++..|+..+     .+.+++.|.++
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r  137 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR  137 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence            35789999999999999999998643     56678888764

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.20  E-value=0.0016  Score=64.48  Aligned_cols=37  Identities=32%  Similarity=0.464  Sum_probs=30.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCCcch
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRDTLG  307 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~-----~~~~~i~~D~~~  307 (369)
                      .|.+|+++|+|||||||++..|+..     ..+.+++.|.++
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R  140 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR  140 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence            3678999999999999999999864     356788888874

>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} SCOP: c.108.1.0 PDB: 2i54_A* 2i55_A*

Probab=97.19  E-value=0.00028  Score=64.30  Aligned_cols=43  Identities=19%  Similarity=0.311  Sum_probs=36.9

Q ss_pred             ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecC
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQ   79 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq   79 (369)
                      .|+++||+||||+.+..            .+.|...++|++|+++|++++|+|-.
T Consensus         4 ~kli~~DlDGTLl~~~~------------~i~~~~~~~l~~l~~~g~~~~iaTGR   46 (246)
T 3f9r_A            4 RVLLLFDVDGTLTPPRL------------CQTDEMRALIKRARGAGFCVGTVGGS   46 (246)
T ss_dssp             SEEEEECSBTTTBSTTS------------CCCHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             ceEEEEeCcCCcCCCCC------------ccCHHHHHHHHHHHHCCCEEEEECCC
Confidence            68999999999986542            25688999999999999999999973

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=97.11  E-value=0.0013  Score=57.69  Aligned_cols=25  Identities=28%  Similarity=0.476  Sum_probs=21.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      +..+++.|+||+||||+++.+++..
T Consensus        45 ~~~~ll~G~~G~GKT~l~~~~~~~~   69 (250)
T 1njg_A           45 HHAYLFSGTRGVGKTSIARLLAKGL   69 (250)
T ss_dssp             CSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3588999999999999999998754

>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural genomics, BSGC structure funded by NIH structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.108.1.10

Probab=97.10  E-value=0.00076  Score=61.79  Aligned_cols=42  Identities=21%  Similarity=0.331  Sum_probs=35.1

Q ss_pred             ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecC
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQ   79 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq   79 (369)
                      .|+++||+||||+.+..            .+.|...++|++ +++|++++|+|-.
T Consensus         2 ikli~~DlDGTLl~~~~------------~i~~~~~~al~~-~~~Gi~v~iaTGR   43 (268)
T 1nf2_A            2 YRVFVFDLDGTLLNDNL------------EISEKDRRNIEK-LSRKCYVVFASGR   43 (268)
T ss_dssp             BCEEEEECCCCCSCTTS------------CCCHHHHHHHHH-HTTTSEEEEECSS
T ss_pred             ccEEEEeCCCcCCCCCC------------ccCHHHHHHHHH-HhCCCEEEEECCC
Confidence            48999999999996532            146778999999 9999999999973

>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}

Probab=97.10  E-value=0.0025  Score=56.43  Aligned_cols=93  Identities=16%  Similarity=0.182  Sum_probs=57.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC---CcEEEeC-Ccchh----------------------HHHHH----HH-----
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL---NYTTVNR-DTLGS----------------------WQKCV----SV-----  315 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~---~~~~i~~-D~~~~----------------------~~~~~----~~-----  315 (369)
                      ++.+|+++|.|||||+|+|+.+.+.+   ++..++. |.++.                      |+...    +.     
T Consensus        10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~~d   89 (202)
T 3ch4_B           10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQAD   89 (202)
T ss_dssp             CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHhcC
Confidence            45799999999999999999998865   3555653 43331                      11111    11     


Q ss_pred             ----HHHHHhC--CCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         316 ----MKAALDS--GLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       316 ----~~~~l~~--g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                          ++.++..  ...||||+.= ...+.+.+.+.   .+..+.+|.+.+|+++-.+|
T Consensus        90 ~~~~~~~~~~~~~~~~vII~dvR-~~~Ev~~fr~~---~g~~~~iirI~as~~~R~~R  143 (202)
T 3ch4_B           90 PGFFCRKIVEGISQPIWLVSDTR-RVSDIQWFREA---YGAVTQTVRVVALEQSRQQR  143 (202)
T ss_dssp             TTTTHHHHSBTCCCSEEEECCCC-SHHHHHHHHHH---HGGGEEEEEEEECHHHHHHT
T ss_pred             chHHHHHHHHhcCCCcEEEeCCC-CHHHHHHHHHh---CCCcEEEEEEECCHHHHHHH
Confidence                1222211  2257777764 44444444432   34458899999999988777

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=97.09  E-value=0.0003  Score=65.87  Aligned_cols=37  Identities=16%  Similarity=0.233  Sum_probs=28.8

Q ss_pred             ccccEEEEEEcCCCCcHHHHHHHHhccCC--cEEEeCCc
Q psy4598         269 AALDSVLIMIGSQGSGKSSFVSTYLKPLN--YTTVNRDT  305 (369)
Q Consensus       269 ~~~~~lIll~G~pGSGKSTla~~L~~~~~--~~~i~~D~  305 (369)
                      ...|..++|.||||+|||++|+++++.++  ...++...
T Consensus        33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~   71 (293)
T 3t15_A           33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGE   71 (293)
T ss_dssp             CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHH
Confidence            34467889999999999999999999875  45555433

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=97.08  E-value=0.0015  Score=54.20  Aligned_cols=71  Identities=10%  Similarity=0.041  Sum_probs=42.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCC-cEEEeCCcchhHHHHHHHHHHHHhCCCcEEEeCCC-CCHHHHHHHHHHHHh
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLN-YTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTN-PDKESRHRYIEAAKQ  347 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~-~~~i~~D~~~~~~~~~~~~~~~l~~g~~vIiD~tn-~~~~~r~~~~~la~~  347 (369)
                      -|+|.|+||+|||++|+.+..... +..++...+..  .......+. ..+..+++|... ........+.....+
T Consensus        29 ~vll~G~~GtGKt~lA~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~-a~~~~l~lDei~~l~~~~q~~Ll~~l~~  101 (143)
T 3co5_A           29 PVFLTGEAGSPFETVARYFHKNGTPWVSPARVEYLI--DMPMELLQK-AEGGVLYVGDIAQYSRNIQTGITFIIGK  101 (143)
T ss_dssp             CEEEEEETTCCHHHHHGGGCCTTSCEECCSSTTHHH--HCHHHHHHH-TTTSEEEEEECTTCCHHHHHHHHHHHHH
T ss_pred             cEEEECCCCccHHHHHHHHHHhCCCeEEechhhCCh--HhhhhHHHh-CCCCeEEEeChHHCCHHHHHHHHHHHHh
Confidence            378999999999999999998765 33444433321  111111222 234567788654 355555555555443

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=97.07  E-value=0.00044  Score=61.25  Aligned_cols=34  Identities=18%  Similarity=0.281  Sum_probs=30.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      ...|+++|++||||||+|.+|+++.+ .+|+.|..
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs~   67 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDRV   67 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSEE
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecchh
Confidence            36799999999999999999999877 88888875

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.06  E-value=0.0026  Score=55.85  Aligned_cols=34  Identities=15%  Similarity=0.120  Sum_probs=27.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhcc--CCcEEEeCCc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKP--LNYTTVNRDT  305 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~--~~~~~i~~D~  305 (369)
                      ..++++.|+|||||||++..++..  .++.+++.+.
T Consensus        20 G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~   55 (220)
T 2cvh_A           20 GVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG   55 (220)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence            368999999999999999999752  2466777654

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.05  E-value=0.00056  Score=67.67  Aligned_cols=35  Identities=20%  Similarity=0.241  Sum_probs=29.3

Q ss_pred             cccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEe
Q psy4598         268 KAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVN  302 (369)
Q Consensus       268 ~~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~  302 (369)
                      .-+.|+=|+|.||||+|||++|++++...++.++.
T Consensus       211 g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~  245 (434)
T 4b4t_M          211 GIRAPKGALMYGPPGTGKTLLARACAAQTNATFLK  245 (434)
T ss_dssp             CCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence            34557889999999999999999999998765554

>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10

Probab=97.05  E-value=0.00043  Score=63.99  Aligned_cols=43  Identities=21%  Similarity=0.400  Sum_probs=36.7

Q ss_pred             ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecC
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQ   79 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq   79 (369)
                      .|+++||+||||+.+..            .+.|...++|++|+++|++++|+|..
T Consensus         5 ~kli~~DlDGTLl~~~~------------~i~~~~~~aL~~l~~~Gi~vviaTGR   47 (282)
T 1rkq_A            5 IKLIAIDMDGTLLLPDH------------TISPAVKNAIAAARARGVNVVLTTGR   47 (282)
T ss_dssp             CCEEEECCCCCCSCTTS------------CCCHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             ceEEEEeCCCCCCCCCC------------cCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            58999999999996531            25688999999999999999999963

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.03  E-value=0.00077  Score=66.62  Aligned_cols=36  Identities=14%  Similarity=0.232  Sum_probs=29.6

Q ss_pred             cccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeC
Q psy4598         268 KAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNR  303 (369)
Q Consensus       268 ~~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~  303 (369)
                      .-+.|+=|+|.||||+|||++|++++..+++.++..
T Consensus       202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v  237 (428)
T 4b4t_K          202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV  237 (428)
T ss_dssp             CCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred             CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence            345567899999999999999999999987655543

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=97.01  E-value=0.0017  Score=61.06  Aligned_cols=85  Identities=14%  Similarity=0.185  Sum_probs=51.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcE--EEeCCcchhHHHHHHHHHHHHh------CCCcEEEeCCCC-C-HHHHHH
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYT--TVNRDTLGSWQKCVSVMKAALD------SGLSVVVDNTNP-D-KESRHR  340 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~--~i~~D~~~~~~~~~~~~~~~l~------~g~~vIiD~tn~-~-~~~r~~  340 (369)
                      .+.++++.|+||+|||++++.+++.++..  .++....+ ...+.........      ....+|||.... . ......
T Consensus        47 ~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~  125 (324)
T 3u61_B           47 IPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRH  125 (324)
T ss_dssp             CCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHH
T ss_pred             CCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHH
Confidence            45688999999999999999999987644  44544433 2222233333332      234677887653 4 556666


Q ss_pred             HHHHHHhcCCeEEEEE
Q psy4598         341 YIEAAKQHGVRCIAVH  356 (369)
Q Consensus       341 ~~~la~~~~~~v~~v~  356 (369)
                      +........-.+.+|.
T Consensus       126 L~~~le~~~~~~~iI~  141 (324)
T 3u61_B          126 LRSFMEAYSSNCSIII  141 (324)
T ss_dssp             HHHHHHHHGGGCEEEE
T ss_pred             HHHHHHhCCCCcEEEE
Confidence            6666555433333333

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.00  E-value=0.0008  Score=66.65  Aligned_cols=35  Identities=11%  Similarity=0.209  Sum_probs=29.2

Q ss_pred             cccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEe
Q psy4598         268 KAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVN  302 (369)
Q Consensus       268 ~~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~  302 (369)
                      ....|+=|+|.||||+|||++|++++...++.++.
T Consensus       211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~  245 (437)
T 4b4t_L          211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIF  245 (437)
T ss_dssp             CCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            34456789999999999999999999998765554

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.00  E-value=0.00072  Score=66.19  Aligned_cols=34  Identities=18%  Similarity=0.291  Sum_probs=28.6

Q ss_pred             ccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEe
Q psy4598         269 AALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVN  302 (369)
Q Consensus       269 ~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~  302 (369)
                      .+.|+=|+|.||||+|||.+|++++...++.++.
T Consensus       179 i~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~  212 (405)
T 4b4t_J          179 IAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIR  212 (405)
T ss_dssp             CCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceE
Confidence            3446778999999999999999999998766554

>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10

Probab=96.99  E-value=0.00053  Score=64.29  Aligned_cols=43  Identities=28%  Similarity=0.420  Sum_probs=36.6

Q ss_pred             ceEEEEecCCceeec-CCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecC
Q psy4598          25 AKIASFDLDGTLITT-KSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQ   79 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~-~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq   79 (369)
                      .|+++||+||||+.. ..            .+.|...++|++|+++|+.++|+|..
T Consensus        27 ikli~~DlDGTLl~~~~~------------~is~~~~~al~~l~~~Gi~v~iaTGR   70 (301)
T 2b30_A           27 IKLLLIDFDGTLFVDKDI------------KVPSENIDAIKEAIEKGYMVSICTGR   70 (301)
T ss_dssp             CCEEEEETBTTTBCCTTT------------CSCHHHHHHHHHHHHHTCEEEEECSS
T ss_pred             ccEEEEECCCCCcCCCCC------------ccCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            589999999999965 31            15678999999999999999999963

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.98  E-value=0.0024  Score=52.94  Aligned_cols=88  Identities=10%  Similarity=0.109  Sum_probs=50.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchhHHHHHHHHHHHHhCCCcEEEeCCC-CCHHHHHHHHHHHHh
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTN-PDKESRHRYIEAAKQ  347 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~~~~~~~~~~~~l~~g~~vIiD~tn-~~~~~r~~~~~la~~  347 (369)
                      -|+|.|+||+|||++|+.+....     ..+ ++...+..-........ . ..+..+++|... +.......+......
T Consensus        26 ~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~-~-a~~g~l~ldei~~l~~~~q~~Ll~~l~~  102 (145)
T 3n70_A           26 AVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLNDFIA-L-AQGGTLVLSHPEHLTREQQYHLVQLQSQ  102 (145)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHHHHHH-H-HTTSCEEEECGGGSCHHHHHHHHHHHHS
T ss_pred             CEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhhcHHH-H-cCCcEEEEcChHHCCHHHHHHHHHHHhh
Confidence            47999999999999999998763     344 65544421111111111 1 234577888754 455556666666555


Q ss_pred             cCCeEEEEEE-eCCHHHH
Q psy4598         348 HGVRCIAVHM-NISKEHA  364 (369)
Q Consensus       348 ~~~~v~~v~l-~~~~e~~  364 (369)
                      ....+++|.. +.+.+..
T Consensus       103 ~~~~~~~I~~t~~~~~~~  120 (145)
T 3n70_A          103 EHRPFRLIGIGDTSLVEL  120 (145)
T ss_dssp             SSCSSCEEEEESSCHHHH
T ss_pred             cCCCEEEEEECCcCHHHH
Confidence            5444444433 4454443

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.98  E-value=0.0025  Score=60.50  Aligned_cols=23  Identities=26%  Similarity=0.534  Sum_probs=20.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      +. +++.|+||+||||+++.++..
T Consensus        37 ~~-~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           37 PH-LLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             CC-EEEECSTTSSHHHHHHTHHHH
T ss_pred             Ce-EEEECCCCCCHHHHHHHHHHH
Confidence            45 899999999999999999874

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.98  E-value=0.00092  Score=65.87  Aligned_cols=36  Identities=19%  Similarity=0.274  Sum_probs=29.6

Q ss_pred             ccccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEe
Q psy4598         267 MKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVN  302 (369)
Q Consensus       267 ~~~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~  302 (369)
                      ...+.|+=|+|.||||+|||.+|++++...++.++.
T Consensus       211 ~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~  246 (437)
T 4b4t_I          211 MGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLR  246 (437)
T ss_dssp             HTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEE
Confidence            334556789999999999999999999998765554

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.96  E-value=0.0004  Score=61.37  Aligned_cols=37  Identities=24%  Similarity=0.354  Sum_probs=29.8

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccCC-----cEEEeCCcc
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPLN-----YTTVNRDTL  306 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~~-----~~~i~~D~~  306 (369)
                      ....+|.|+|++||||||+++.|+..+.     ..+|..|.+
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~   61 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF   61 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence            3457999999999999999999987653     567777654

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.95  E-value=0.00089  Score=56.77  Aligned_cols=26  Identities=23%  Similarity=0.418  Sum_probs=22.3

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      .+..++|.|+||+||||+++.+++.+
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~~   67 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIKI   67 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            34567999999999999999998764

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.92  E-value=0.0013  Score=55.26  Aligned_cols=53  Identities=15%  Similarity=0.258  Sum_probs=36.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC---C--cEEEeCCcchhHHHHHHHHHHHHhCCCcEEEeCCCC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL---N--YTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNP  333 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~---~--~~~i~~D~~~~~~~~~~~~~~~l~~g~~vIiD~tn~  333 (369)
                      ..++|.|++||||||+++.++...   +  ..+++...+...        ..+.....+|+|....
T Consensus        37 ~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~--------~~~~~~~lLilDE~~~   94 (149)
T 2kjq_A           37 QFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT--------DAAFEAEYLAVDQVEK   94 (149)
T ss_dssp             SEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC--------GGGGGCSEEEEESTTC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH--------HHHhCCCEEEEeCccc
Confidence            467899999999999999998754   4  667776654322        1233445677886543

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=96.90  E-value=0.0015  Score=60.08  Aligned_cols=31  Identities=19%  Similarity=0.318  Sum_probs=25.8

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEE
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTV  301 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i  301 (369)
                      .+.-++|.|+||+|||+++++++...+..++
T Consensus        50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~   80 (285)
T 3h4m_A           50 PPKGILLYGPPGTGKTLLAKAVATETNATFI   80 (285)
T ss_dssp             CCSEEEEESSSSSSHHHHHHHHHHHTTCEEE
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence            3456899999999999999999998765443

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.90  E-value=0.00099  Score=66.23  Aligned_cols=34  Identities=15%  Similarity=0.239  Sum_probs=29.0

Q ss_pred             ccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEe
Q psy4598         269 AALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVN  302 (369)
Q Consensus       269 ~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~  302 (369)
                      -..|+=|+|.||||+|||++|++++...++.++.
T Consensus       240 i~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~  273 (467)
T 4b4t_H          240 IDPPKGILLYGPPGTGKTLCARAVANRTDATFIR  273 (467)
T ss_dssp             CCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred             CCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEE
Confidence            3457789999999999999999999998766554

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=96.88  E-value=0.0047  Score=58.23  Aligned_cols=38  Identities=21%  Similarity=0.352  Sum_probs=30.7

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG  307 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~  307 (369)
                      ..+.+|+++|++||||||++..|+..+     .+.+++.|.++
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r  144 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR  144 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence            346799999999999999999998653     46677888764

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=96.88  E-value=0.0026  Score=59.23  Aligned_cols=85  Identities=13%  Similarity=0.151  Sum_probs=50.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccC-------CcEEEeCCcchhHHHHHHHHHHHH-------hCCCcEEEeCCC-CCHHHH
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPL-------NYTTVNRDTLGSWQKCVSVMKAAL-------DSGLSVVVDNTN-PDKESR  338 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~-------~~~~i~~D~~~~~~~~~~~~~~~l-------~~g~~vIiD~tn-~~~~~r  338 (369)
                      .+++.|+||+||||+++.+++.+       .+..++.........+........       .....+|+|... .+....
T Consensus        48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~  127 (327)
T 1iqp_A           48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQ  127 (327)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHH
Confidence            38999999999999999998864       244555444322111111222221       224467788754 456667


Q ss_pred             HHHHHHHHhcCCeEEEEEEe
Q psy4598         339 HRYIEAAKQHGVRCIAVHMN  358 (369)
Q Consensus       339 ~~~~~la~~~~~~v~~v~l~  358 (369)
                      ..+.....+....+.++...
T Consensus       128 ~~L~~~le~~~~~~~~i~~~  147 (327)
T 1iqp_A          128 QALRRTMEMFSSNVRFILSC  147 (327)
T ss_dssp             HHHHHHHHHTTTTEEEEEEE
T ss_pred             HHHHHHHHhcCCCCeEEEEe
Confidence            77777776655555555443

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.87  E-value=0.0039  Score=55.01  Aligned_cols=23  Identities=26%  Similarity=0.432  Sum_probs=20.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~  294 (369)
                      -.++.|+|+|||||||+++.++.
T Consensus        25 G~~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           25 QAITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999975

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.86  E-value=0.00068  Score=64.49  Aligned_cols=38  Identities=21%  Similarity=0.264  Sum_probs=31.7

Q ss_pred             ccccEEEEEEcCCCCcHHHHHHHHhccC-------CcEEEeCCcc
Q psy4598         269 AALDSVLIMIGSQGSGKSSFVSTYLKPL-------NYTTVNRDTL  306 (369)
Q Consensus       269 ~~~~~lIll~G~pGSGKSTla~~L~~~~-------~~~~i~~D~~  306 (369)
                      ...|.+|-++|++||||||+++.|...+       .+.+++.|.+
T Consensus        89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f  133 (321)
T 3tqc_A           89 PKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGF  133 (321)
T ss_dssp             CCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccc
Confidence            4557899999999999999999998754       3677888885

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=96.86  E-value=0.0029  Score=60.10  Aligned_cols=60  Identities=17%  Similarity=0.214  Sum_probs=38.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc--CCcEEEeC------Ccch-hHHHHHHHHHHHHhCCCcEEEeCCC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP--LNYTTVNR------DTLG-SWQKCVSVMKAALDSGLSVVVDNTN  332 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~--~~~~~i~~------D~~~-~~~~~~~~~~~~l~~g~~vIiD~tn  332 (369)
                      .++++.|+||+||||||.+++..  ..+.+++.      +.+. ..+...+.+.+.+.....+|||...
T Consensus       124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~LLVIDsI~  192 (331)
T 2vhj_A          124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHRVIVIDSLK  192 (331)
T ss_dssp             EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCSEEEEECCT
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCCEEEEeccc
Confidence            56799999999999999999864  23456665      2221 2233344444444433378899754

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.81  E-value=0.00066  Score=63.60  Aligned_cols=39  Identities=23%  Similarity=0.187  Sum_probs=31.4

Q ss_pred             cccccEEEEEEcCCCCcHHHHHHHHhccCC-------cEEE-eCCcc
Q psy4598         268 KAALDSVLIMIGSQGSGKSSFVSTYLKPLN-------YTTV-NRDTL  306 (369)
Q Consensus       268 ~~~~~~lIll~G~pGSGKSTla~~L~~~~~-------~~~i-~~D~~  306 (369)
                      ....+.+|.++|++||||||+++.|+..++       ...+ +.|.+
T Consensus        27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f   73 (290)
T 1odf_A           27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF   73 (290)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccc
Confidence            345578999999999999999999987642       4556 88886

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=96.79  E-value=0.007  Score=56.71  Aligned_cols=36  Identities=19%  Similarity=0.382  Sum_probs=28.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhcc----C--CcEEEeCCcch
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKP----L--NYTTVNRDTLG  307 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~----~--~~~~i~~D~~~  307 (369)
                      +.+|+++|++||||||++..|+..    .  .+.+++.|..+
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r  146 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYR  146 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCccc
Confidence            457899999999999999998743    2  46778888764

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.78  E-value=0.00077  Score=61.10  Aligned_cols=36  Identities=19%  Similarity=0.299  Sum_probs=29.3

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcE----------EEeCCcc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYT----------TVNRDTL  306 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~----------~i~~D~~  306 (369)
                      .+.+|-|+|++||||||+++.|+..++..          ++++|.+
T Consensus        24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~   69 (245)
T 2jeo_A           24 RPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRF   69 (245)
T ss_dssp             CSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcC
Confidence            34689999999999999999998876543          6777754

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=96.75  E-value=0.0014  Score=61.38  Aligned_cols=76  Identities=13%  Similarity=0.298  Sum_probs=49.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCC--cEEEeCCcchhHHHHHHHHHHHHhCCCcEEEeCCCC-CHHHHHHHHHHHHhc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLN--YTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNP-DKESRHRYIEAAKQH  348 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~--~~~i~~D~~~~~~~~~~~~~~~l~~g~~vIiD~tn~-~~~~r~~~~~la~~~  348 (369)
                      ..|+|.|+||+|||++|+.+++..+  ...++...+.....+.......+..+..+++|.... .......+.......
T Consensus        39 ~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~  117 (324)
T 1hqc_A           39 EHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDF  117 (324)
T ss_dssp             CCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSHHHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHS
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCChHHHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhh
Confidence            4689999999999999999998765  345565555433333333333234566788887653 455556666665554

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.73  E-value=0.001  Score=62.74  Aligned_cols=37  Identities=19%  Similarity=0.276  Sum_probs=29.9

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccCC-------cEEEeCCcc
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPLN-------YTTVNRDTL  306 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~~-------~~~i~~D~~  306 (369)
                      ..+.+|.|+|++||||||+++.|+..++       +.+|+.|.+
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~  121 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence            4457999999999999999999987543       667777754

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=96.73  E-value=0.008  Score=60.56  Aligned_cols=37  Identities=27%  Similarity=0.370  Sum_probs=29.1

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCCcch
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRDTLG  307 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~-----~~~~~i~~D~~~  307 (369)
                      .+.+|+++|+|||||||++..|+..     ....+++.|.++
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r  141 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR  141 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence            3578999999999999999999854     356778888764

>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15

Probab=96.72  E-value=0.001  Score=59.98  Aligned_cols=46  Identities=17%  Similarity=0.246  Sum_probs=35.5

Q ss_pred             eEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecC
Q psy4598          26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQ   79 (369)
Q Consensus        26 k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq   79 (369)
                      |+++||+||||+....      ++.+ ..+.|...++|++|+++| +++|+|..
T Consensus         2 kli~~DlDGTLl~~~~------~~~~-~~i~~~~~~al~~l~~~g-~v~iaTGR   47 (239)
T 1u02_A            2 SLIFLDYDGTLVPIIM------NPEE-SYADAGLLSLISDLKERF-DTYIVTGR   47 (239)
T ss_dssp             CEEEEECBTTTBCCCS------CGGG-CCCCHHHHHHHHHHHHHS-EEEEECSS
T ss_pred             eEEEEecCCCCcCCCC------Cccc-CCCCHHHHHHHHHHhcCC-CEEEEeCC
Confidence            6899999999996421      1112 125788999999999999 99999973

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.72  E-value=0.0014  Score=66.30  Aligned_cols=31  Identities=19%  Similarity=0.351  Sum_probs=26.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEe
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVN  302 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~  302 (369)
                      +..++|+|+||+||||+|+.+++.+++.++.
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~l~~~~i~  107 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQELGYDILE  107 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence            4688999999999999999999998765554

>2amy_A PMM 2, phosphomannomutase 2; HS.459855, HS.313504, BC008310, phosphatase, PFAM PF03332, H superfamily, jaecken disease; 2.09A {Homo sapiens} SCOP: c.108.1.10 PDB: 2q4r_A

Probab=96.69  E-value=0.0012  Score=59.66  Aligned_cols=42  Identities=19%  Similarity=0.412  Sum_probs=35.3

Q ss_pred             CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEec
Q psy4598          24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTN   78 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TN   78 (369)
                      +.|+++||+||||+....            .+-|...++|++|+++ ++++|+|-
T Consensus         5 ~~kli~~DlDGTLl~~~~------------~i~~~~~~al~~l~~~-i~v~iaTG   46 (246)
T 2amy_A            5 GPALCLFDVDGTLTAPRQ------------KITKEMDDFLQKLRQK-IKIGVVGG   46 (246)
T ss_dssp             CSEEEEEESBTTTBCTTS------------CCCHHHHHHHHHHTTT-SEEEEECS
T ss_pred             CceEEEEECCCCcCCCCc------------ccCHHHHHHHHHHHhC-CeEEEEcC
Confidence            468999999999996531            1467899999999999 99999996

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.68  E-value=0.0087  Score=51.13  Aligned_cols=25  Identities=24%  Similarity=0.394  Sum_probs=21.3

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      ...-|+++|.+|+||||+...|...
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3456899999999999999999754

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=96.66  E-value=0.0032  Score=54.43  Aligned_cols=23  Identities=30%  Similarity=0.624  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccC
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      .+.|+|++||||||+.+.++..+
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l   24 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998654

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=96.66  E-value=0.0011  Score=62.05  Aligned_cols=34  Identities=12%  Similarity=0.215  Sum_probs=28.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCC
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRD  304 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D  304 (369)
                      .+.-|+|.|+||+|||++|++++...+..++..+
T Consensus        48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~   81 (301)
T 3cf0_A           48 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIK   81 (301)
T ss_dssp             CCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEE
Confidence            3467899999999999999999998876655443

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.65  E-value=0.0091  Score=59.88  Aligned_cols=38  Identities=21%  Similarity=0.420  Sum_probs=29.3

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccC----CcEEE-eCCcch
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPL----NYTTV-NRDTLG  307 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~----~~~~i-~~D~~~  307 (369)
                      ..+.+|.|+|++||||||+.+.|+..+    +-+.+ +.|.++
T Consensus       291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r  333 (503)
T 2yhs_A          291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR  333 (503)
T ss_dssp             CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTC
T ss_pred             cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccc
Confidence            346899999999999999999998643    44455 577654

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.64  E-value=0.0029  Score=62.87  Aligned_cols=75  Identities=13%  Similarity=0.247  Sum_probs=43.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEe--CCcc--hhHHHHHHHHHHHHh--CCCcEEEeCCCC-CHHHHHHHHHHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVN--RDTL--GSWQKCVSVMKAALD--SGLSVVVDNTNP-DKESRHRYIEAA  345 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~--~D~~--~~~~~~~~~~~~~l~--~g~~vIiD~tn~-~~~~r~~~~~la  345 (369)
                      .-++|.|+||+||||+|+.+++..+..++.  ....  ...+.....+.....  .+..++||.... +......++...
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~l  130 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHI  130 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHH
Confidence            468999999999999999999988655443  3222  122333333333322  344677887643 344445555555


Q ss_pred             Hh
Q psy4598         346 KQ  347 (369)
Q Consensus       346 ~~  347 (369)
                      .+
T Consensus       131 e~  132 (447)
T 3pvs_A          131 ED  132 (447)
T ss_dssp             HT
T ss_pred             hc
Confidence            54

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.64  E-value=0.011  Score=57.98  Aligned_cols=47  Identities=47%  Similarity=0.861  Sum_probs=40.2

Q ss_pred             CCCceEEEEEcCCCCCcchhhhhccCCCcccccccccccchhhhhhh
Q psy4598         220 HDKKQVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSV  266 (369)
Q Consensus       220 ~~~~~i~v~~g~~~~gks~~~~~~~~~~~~~~i~r~~~~~~~~~~~~  266 (369)
                      ...+.+++++|+|||||||+++.+....+|..|+.|.+..+..+...
T Consensus       255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~~~~~~~~  301 (416)
T 3zvl_A          255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSS  301 (416)
T ss_dssp             CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGSCSHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEccchHHHHHHHHHH
Confidence            45678999999999999999999887779999999999887766543

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.63  E-value=0.0026  Score=60.08  Aligned_cols=76  Identities=12%  Similarity=0.185  Sum_probs=48.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCc--EEEeCCcchhHHHHHHHHHHHHhCCCcEEEeCCC-CCHHHHHHHHHHHHhcC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNY--TTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTN-PDKESRHRYIEAAKQHG  349 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~--~~i~~D~~~~~~~~~~~~~~~l~~g~~vIiD~tn-~~~~~r~~~~~la~~~~  349 (369)
                      .-|+|.|+||+|||++|+.+++..+.  ..++...+.....+.... ..+..+..+++|... ........+.....+..
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~  134 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAIL-TNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYR  134 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCSHHHHHHHH-HTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSC
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccchhHHHHHH-HhccCCCEEEEechhhcCHHHHHHHHHHHHhcc
Confidence            45899999999999999999998754  445544443322222222 223456678888754 45566666666665544

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.63  E-value=0.001  Score=60.21  Aligned_cols=36  Identities=11%  Similarity=0.314  Sum_probs=27.9

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCC--cEEEeCCcc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLN--YTTVNRDTL  306 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~--~~~i~~D~~  306 (369)
                      .+.-|+|.|+||+|||++|+.+++..+  ...++...+
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~   75 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEF   75 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHH
Confidence            345689999999999999999999865  445555443

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.62  E-value=0.0044  Score=57.58  Aligned_cols=84  Identities=13%  Similarity=0.098  Sum_probs=50.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhccC-------CcEEEeCCcchhHHHHHHHHHHHH-------hC-CCcEEEeCCC-CCHHHH
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPL-------NYTTVNRDTLGSWQKCVSVMKAAL-------DS-GLSVVVDNTN-PDKESR  338 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~-------~~~~i~~D~~~~~~~~~~~~~~~l-------~~-g~~vIiD~tn-~~~~~r  338 (369)
                      +++.|+||+||||+++.+++.+       .+..++.........+...+....       .. ...+|||... .+....
T Consensus        45 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~  124 (323)
T 1sxj_B           45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQ  124 (323)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHH
Confidence            8999999999999999998864       244455433222333333333332       22 3467788753 355556


Q ss_pred             HHHHHHHHhcCCeEEEEEEe
Q psy4598         339 HRYIEAAKQHGVRCIAVHMN  358 (369)
Q Consensus       339 ~~~~~la~~~~~~v~~v~l~  358 (369)
                      ..+.....+..-.+.++...
T Consensus       125 ~~L~~~le~~~~~~~~il~~  144 (323)
T 1sxj_B          125 QALRRTMELYSNSTRFAFAC  144 (323)
T ss_dssp             HTTHHHHHHTTTTEEEEEEE
T ss_pred             HHHHHHHhccCCCceEEEEe
Confidence            66666666654444444443

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.58  E-value=0.0011  Score=60.18  Aligned_cols=35  Identities=17%  Similarity=0.401  Sum_probs=27.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCC--cEEEeCCcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLN--YTTVNRDTL  306 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~--~~~i~~D~~  306 (369)
                      +.-|+|.|+||+||||+++.++...+  ...++...+
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~   81 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDF   81 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSS
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHH
Confidence            34589999999999999999998765  455555444

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.58  E-value=0.005  Score=58.11  Aligned_cols=83  Identities=12%  Similarity=0.127  Sum_probs=48.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhccC--------CcEEEeCCcchhHHHHHHHHHHHH-----------------hCCCcEEEe
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPL--------NYTTVNRDTLGSWQKCVSVMKAAL-----------------DSGLSVVVD  329 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~--------~~~~i~~D~~~~~~~~~~~~~~~l-----------------~~g~~vIiD  329 (369)
                      ++|.|+||+||||+++.+++.+        ....++.........+.+......                 .....+++|
T Consensus        61 ~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiD  140 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILD  140 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEET
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEE
Confidence            8999999999999999998764        244455443222211111111111                 122367788


Q ss_pred             CCC-CCHHHHHHHHHHHHhcCCeEEEEEE
Q psy4598         330 NTN-PDKESRHRYIEAAKQHGVRCIAVHM  357 (369)
Q Consensus       330 ~tn-~~~~~r~~~~~la~~~~~~v~~v~l  357 (369)
                      ... ........+.+...+......++..
T Consensus       141 E~~~l~~~~~~~Ll~~le~~~~~~~~il~  169 (353)
T 1sxj_D          141 EADSMTADAQSALRRTMETYSGVTRFCLI  169 (353)
T ss_dssp             TGGGSCHHHHHHHHHHHHHTTTTEEEEEE
T ss_pred             CCCccCHHHHHHHHHHHHhcCCCceEEEE
Confidence            653 4566667777776665444444444

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.57  E-value=0.0074  Score=57.44  Aligned_cols=37  Identities=24%  Similarity=0.393  Sum_probs=28.7

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcc
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTL  306 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~  306 (369)
                      ..+.+|.|+|++||||||+.+.|+..+     .+.+...|..
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~  168 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTF  168 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccc
Confidence            346799999999999999999998653     3455566654

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.56  E-value=0.0063  Score=57.84  Aligned_cols=25  Identities=28%  Similarity=0.473  Sum_probs=22.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      +..++|.|+||+||||+++.+++..
T Consensus        44 ~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           44 PSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHH
Confidence            4578999999999999999998765

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.56  E-value=0.0015  Score=60.59  Aligned_cols=34  Identities=18%  Similarity=0.346  Sum_probs=27.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcE--EEeCCc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYT--TVNRDT  305 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~--~i~~D~  305 (369)
                      +.-|+|.|+||+||||+|+.++...+..  .++...
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~   89 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATECSATFLNISAAS   89 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTT
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHH
Confidence            4578999999999999999999988644  445443

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.55  E-value=0.0046  Score=58.13  Aligned_cols=59  Identities=14%  Similarity=0.224  Sum_probs=37.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchh-HH-HH----HHHHHHHHhCCCcEEEeCC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGS-WQ-KC----VSVMKAALDSGLSVVVDNT  331 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~-~~-~~----~~~~~~~l~~g~~vIiD~t  331 (369)
                      ..++|.|+||+||||+++.++...     .+.+++...+.. +. .+    .......+.....+++|..
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi  107 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSVDLLLLDDV  107 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHHHHTCSEEEEECG
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCc
Confidence            457999999999999999998754     456676655421 11 01    1122233444567788875

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.54  E-value=0.0017  Score=54.98  Aligned_cols=26  Identities=23%  Similarity=0.460  Sum_probs=22.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      .+..++|.|+||+|||++++.+++.+
T Consensus        42 ~~~~~ll~G~~G~GKT~l~~~~~~~~   67 (195)
T 1jbk_A           42 TKNNPVLIGEPGVGKTAIVEGLAQRI   67 (195)
T ss_dssp             SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            34668999999999999999998864

>2fue_A PMM 1, PMMH-22, phosphomannomutase 1; enzyme-product complex, protein glycosyl carbohydrate-deficient glycoprotein syndrome; HET: MSE M1P; 1.75A {Homo sapiens} SCOP: c.108.1.10 PDB: 2fuc_A*

Probab=96.51  E-value=0.0016  Score=59.41  Aligned_cols=42  Identities=17%  Similarity=0.339  Sum_probs=34.7

Q ss_pred             CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEec
Q psy4598          24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTN   78 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TN   78 (369)
                      +.|+++||+||||+....            .+-|...++|++|+++ ++++|+|-
T Consensus        12 ~~kli~~DlDGTLl~~~~------------~is~~~~~al~~l~~~-i~v~iaTG   53 (262)
T 2fue_A           12 ERVLCLFDVDGTLTPARQ------------KIDPEVAAFLQKLRSR-VQIGVVGG   53 (262)
T ss_dssp             -CEEEEEESBTTTBSTTS------------CCCHHHHHHHHHHTTT-SEEEEECS
T ss_pred             CeEEEEEeCccCCCCCCC------------cCCHHHHHHHHHHHhC-CEEEEEcC
Confidence            469999999999996531            1467899999999988 99999995

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.49  E-value=0.0053  Score=58.48  Aligned_cols=25  Identities=20%  Similarity=0.490  Sum_probs=22.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLN  297 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~  297 (369)
                      ..++|.|+||+|||++|+.+++.++
T Consensus        71 ~~vLl~GppGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           71 RAVLIAGQPGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhc
Confidence            5789999999999999999998754

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.48  E-value=0.0016  Score=59.64  Aligned_cols=32  Identities=16%  Similarity=0.243  Sum_probs=26.2

Q ss_pred             ccccEEEEEEcCCCCcHHHHHHHHhccCCcEE
Q psy4598         269 AALDSVLIMIGSQGSGKSSFVSTYLKPLNYTT  300 (369)
Q Consensus       269 ~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~  300 (369)
                      ...+.-++|.|+||+|||++|+++++..+..+
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~   92 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPF   92 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSE
T ss_pred             CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence            34457899999999999999999999865443

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.47  E-value=0.0017  Score=60.20  Aligned_cols=32  Identities=19%  Similarity=0.373  Sum_probs=25.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhccCCc--EEEeCCcc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPLNY--TTVNRDTL  306 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~~~--~~i~~D~~  306 (369)
                      ++|.|||||||||+++.++...+.  ..++...+
T Consensus        47 vlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l   80 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVANESGLNFISVKGPEL   80 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTT
T ss_pred             EEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHH
Confidence            899999999999999999987653  44554443

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=96.46  E-value=0.0049  Score=58.66  Aligned_cols=88  Identities=13%  Similarity=0.155  Sum_probs=51.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCc--------------------------EEEeCCc---chhHHHHHHHHHHHH--
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNY--------------------------TTVNRDT---LGSWQKCVSVMKAAL--  320 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~--------------------------~~i~~D~---~~~~~~~~~~~~~~l--  320 (369)
                      +..+++.|+||+||||+++.+++.+++                          ..++...   ....+.+...+....  
T Consensus        38 ~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  117 (373)
T 1jr3_A           38 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPAR  117 (373)
T ss_dssp             CSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhcccc
Confidence            457899999999999999999876432                          2222211   111222222221111  


Q ss_pred             hCCCcEEEeCC-CCCHHHHHHHHHHHHhcCCeEEEEEEeC
Q psy4598         321 DSGLSVVVDNT-NPDKESRHRYIEAAKQHGVRCIAVHMNI  359 (369)
Q Consensus       321 ~~g~~vIiD~t-n~~~~~r~~~~~la~~~~~~v~~v~l~~  359 (369)
                      .....+|||.. ..+......+.+...+....+.++....
T Consensus       118 ~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~  157 (373)
T 1jr3_A          118 GRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT  157 (373)
T ss_dssp             SSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEES
T ss_pred             CCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeC
Confidence            12346778865 3466677778777776555565555543

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.44  E-value=0.0029  Score=60.52  Aligned_cols=26  Identities=15%  Similarity=0.328  Sum_probs=22.7

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      .+..++|.|+||+||||+++.+++..
T Consensus        44 ~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           44 VKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            34689999999999999999998754

>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*

Probab=96.44  E-value=0.0059  Score=58.25  Aligned_cols=26  Identities=19%  Similarity=0.124  Sum_probs=23.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLN  297 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~  297 (369)
                      ..+|.+-|+-||||||+++.|++.++
T Consensus         7 ~~fI~~EG~dGaGKTT~~~~La~~L~   32 (334)
T 1p6x_A            7 IVRIYLDGVYGIGKSTTGRVMASAAS   32 (334)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            47999999999999999999999863

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.43  E-value=0.0072  Score=57.26  Aligned_cols=82  Identities=11%  Similarity=0.121  Sum_probs=46.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhccCC-------cEEEeCCcchhHHHHHHHHHHHHh-------CCCcEEEeCC-CCCHHHHH
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPLN-------YTTVNRDTLGSWQKCVSVMKAALD-------SGLSVVVDNT-NPDKESRH  339 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~~-------~~~i~~D~~~~~~~~~~~~~~~l~-------~g~~vIiD~t-n~~~~~r~  339 (369)
                      +++.||||+||||+++.+++.+.       +..++...........+.+....+       ..+.+|+|.. ..+.....
T Consensus        49 ~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~  128 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQN  128 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHH
Confidence            79999999999999999998641       233333222222222222222221       1345677754 34566666


Q ss_pred             HHHHHHHhcCCeEEEEE
Q psy4598         340 RYIEAAKQHGVRCIAVH  356 (369)
Q Consensus       340 ~~~~la~~~~~~v~~v~  356 (369)
                      .+.....+..-.+.++.
T Consensus       129 ~L~~~le~~~~~~~~il  145 (340)
T 1sxj_C          129 ALRRVIERYTKNTRFCV  145 (340)
T ss_dssp             HHHHHHHHTTTTEEEEE
T ss_pred             HHHHHHhcCCCCeEEEE
Confidence            77776665544344433

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.42  E-value=0.015  Score=54.52  Aligned_cols=36  Identities=22%  Similarity=0.341  Sum_probs=29.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG  307 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~  307 (369)
                      +.+|+++|++|+||||++..|+..+     ...+++.|..+
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r  138 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR  138 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence            4678889999999999999998643     56778888654

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.39  E-value=0.013  Score=57.24  Aligned_cols=33  Identities=18%  Similarity=0.233  Sum_probs=25.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc-----------CCcEEEeCCc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP-----------LNYTTVNRDT  305 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~-----------~~~~~i~~D~  305 (369)
                      .++.|+|+||||||||+..++-.           .+..+++...
T Consensus       179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~  222 (400)
T 3lda_A          179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG  222 (400)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence            68999999999999999977521           2367777654

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.39  E-value=0.0018  Score=61.20  Aligned_cols=31  Identities=26%  Similarity=0.364  Sum_probs=25.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEe
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVN  302 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~  302 (369)
                      +.-|+|.|+||+|||++|++++...+..++.
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~   81 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATEANSTFFS   81 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHHHTCEEEE
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHCCCEEE
Confidence            4568999999999999999999987655443

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=96.38  E-value=0.0058  Score=64.88  Aligned_cols=35  Identities=11%  Similarity=0.133  Sum_probs=29.6

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCC
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRD  304 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D  304 (369)
                      ..|+=|+|.||||+|||++|++++..+++.++..+
T Consensus       236 ~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~  270 (806)
T 3cf2_A          236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN  270 (806)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEE
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEE
Confidence            45678999999999999999999999887666543

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.37  E-value=0.0015  Score=62.64  Aligned_cols=32  Identities=28%  Similarity=0.440  Sum_probs=26.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNR  303 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~  303 (369)
                      +.-|+|.||||+|||++|+.+++.++..++..
T Consensus        51 ~~~vll~GppGtGKT~la~~ia~~~~~~~~~~   82 (363)
T 3hws_A           51 KSNILLIGPTGSGKTLLAETLARLLDVPFTMA   82 (363)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCEEEe
Confidence            35689999999999999999999886555543

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.34  E-value=0.0026  Score=55.03  Aligned_cols=33  Identities=18%  Similarity=0.272  Sum_probs=27.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      .-|+++|+||+||||+|.+|.++ ++.+++-|..
T Consensus        17 ~gvli~G~SGaGKStlal~L~~r-G~~lvaDD~v   49 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDR-GHQLVCDDVI   49 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHT-TCEEEESSEE
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc-CCeEecCCEE
Confidence            46899999999999999999985 6677776654

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=96.33  E-value=0.0016  Score=64.53  Aligned_cols=33  Identities=24%  Similarity=0.390  Sum_probs=27.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRD  304 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D  304 (369)
                      +.-|+|.||||+||||+|+++++.+++.++..|
T Consensus        50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~   82 (444)
T 1g41_A           50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE   82 (444)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred             CceEEEEcCCCCCHHHHHHHHHHHcCCCceeec
Confidence            345899999999999999999999876665543

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.33  E-value=0.022  Score=56.16  Aligned_cols=36  Identities=25%  Similarity=0.296  Sum_probs=29.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG  307 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~  307 (369)
                      +.+|+++|++||||||++..|+..+     .+.+++.|..+
T Consensus        98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r  138 (425)
T 2ffh_A           98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR  138 (425)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence            4678889999999999999998643     46778888764

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.32  E-value=0.0051  Score=58.37  Aligned_cols=69  Identities=14%  Similarity=0.239  Sum_probs=39.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCc--EEEeCCcchhHHHHHHHHHHHHhCCCcEEEeCCC-CCHHHHHHHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNY--TTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTN-PDKESRHRYI  342 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~--~~i~~D~~~~~~~~~~~~~~~l~~g~~vIiD~tn-~~~~~r~~~~  342 (369)
                      ..++|.||||+||||+++.++..++.  ...+...+..-..+.. ....+..+..++||... +.....+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~-~~~~~~~~~v~~iDE~~~l~~~~~e~L~  123 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA-ILTSLERGDVLFIDEIHRLNKAVEELLY  123 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHH-HHHHCCTTCEEEEETGGGCCHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHH-HHHHccCCCEEEEcchhhcCHHHHHHHH
Confidence            56899999999999999999988754  3344444321112111 11223345566777543 3443334343

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.31  E-value=0.022  Score=46.70  Aligned_cols=88  Identities=22%  Similarity=0.252  Sum_probs=50.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCC--------------cEEEeCCc--c--------hh----HHHHHHHHHHHHhCCC-
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLN--------------YTTVNRDT--L--------GS----WQKCVSVMKAALDSGL-  324 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~--------------~~~i~~D~--~--------~~----~~~~~~~~~~~l~~g~-  324 (369)
                      -|+++|.+|+||||+.+++.....              ...+..+.  +        ..    ...........+.... 
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~   82 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEV   82 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETTEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccchHHHHHHHHHHHHHhCCE
Confidence            478999999999999999976421              00111111  0        01    1223333444444333 


Q ss_pred             -cEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCH
Q psy4598         325 -SVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISK  361 (369)
Q Consensus       325 -~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~  361 (369)
                       .+|+|.++........+.+..+..+.++.++.-.++.
T Consensus        83 ~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  120 (161)
T 2dyk_A           83 VLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDD  120 (161)
T ss_dssp             EEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCS
T ss_pred             EEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECccc
Confidence             4568888754444455666666678888777766665

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.29  E-value=0.018  Score=55.97  Aligned_cols=51  Identities=14%  Similarity=0.140  Sum_probs=32.4

Q ss_pred             HHHHHHHHhCCCcEEEeC--CCCCHHHHHHHHHHHH----hcCCeEEEEEEeCCHHHHH
Q psy4598         313 VSVMKAALDSGLSVVVDN--TNPDKESRHRYIEAAK----QHGVRCIAVHMNISKEHAK  365 (369)
Q Consensus       313 ~~~~~~~l~~g~~vIiD~--tn~~~~~r~~~~~la~----~~~~~v~~v~l~~~~e~~~  365 (369)
                      ...++..+..-..+++|=  ++++...|..+++..+    +.|.  .++++.=+.+++.
T Consensus       142 VaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~--tii~vTHd~~ea~  198 (381)
T 3rlf_A          142 VAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGR--TMIYVTHDQVEAM  198 (381)
T ss_dssp             HHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCC--EEEEECSCHHHHH
T ss_pred             HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCC--EEEEEECCHHHHH
Confidence            445566666777889994  5678887777765544    3455  4566666665554

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.29  E-value=0.0024  Score=60.49  Aligned_cols=34  Identities=18%  Similarity=0.297  Sum_probs=26.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-Cc--EEEeCCc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-NY--TTVNRDT  305 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-~~--~~i~~D~  305 (369)
                      +.-|+|.||||+|||++|++++... +.  ..++...
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~   81 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD   81 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCS
T ss_pred             CceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHH
Confidence            3578999999999999999999876 43  4455443

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=96.27  E-value=0.018  Score=54.53  Aligned_cols=37  Identities=16%  Similarity=0.336  Sum_probs=29.7

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG  307 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~  307 (369)
                      .+.+|+++|++|+||||++..|+..+     .+.+++.|..+
T Consensus       104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r  145 (320)
T 1zu4_A          104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFR  145 (320)
T ss_dssp             SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence            35789999999999999999998643     46677888754

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.25  E-value=0.014  Score=56.03  Aligned_cols=33  Identities=15%  Similarity=0.218  Sum_probs=26.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCCc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRDT  305 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~-----~~~~~i~~D~  305 (369)
                      .++++.|+|||||||++..++..     ..+.+++.+.
T Consensus        62 ~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~   99 (349)
T 2zr9_A           62 RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH   99 (349)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence            58899999999999999998753     2567777654

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.25  E-value=0.023  Score=48.20  Aligned_cols=89  Identities=18%  Similarity=0.250  Sum_probs=49.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC---------------------CcEEEeCCcch-------hHHHHHHHHHHHHhC--
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL---------------------NYTTVNRDTLG-------SWQKCVSVMKAALDS--  322 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~---------------------~~~~i~~D~~~-------~~~~~~~~~~~~l~~--  322 (369)
                      .-|+++|.+|+||||+..++....                     ...+++.--+.       ............+..  
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRW  103 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCT
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEECCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcCc
Confidence            468899999999999999997642                     01122221110       011122222222322  


Q ss_pred             ---CCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCH
Q psy4598         323 ---GLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISK  361 (369)
Q Consensus       323 ---g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~  361 (369)
                         ...+|+|.+.........+....+..+.++.++.-.++.
T Consensus       104 ~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl  145 (195)
T 3pqc_A          104 SLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDK  145 (195)
T ss_dssp             TEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGG
T ss_pred             CceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhc
Confidence               224457876654444445566667778888777665553

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=96.24  E-value=0.02  Score=50.86  Aligned_cols=33  Identities=24%  Similarity=0.390  Sum_probs=25.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCCc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRDT  305 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~-----~~~~~i~~D~  305 (369)
                      .++++.|+|||||||++..++..     .++.+++.+.
T Consensus        24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~   61 (247)
T 2dr3_A           24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE   61 (247)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence            58899999999999999888643     2566666554

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.22  E-value=0.024  Score=53.13  Aligned_cols=37  Identities=22%  Similarity=0.408  Sum_probs=27.7

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC----C-cEEEeCCcch
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL----N-YTTVNRDTLG  307 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~----~-~~~i~~D~~~  307 (369)
                      .+.++.|+|++||||||+.+.|+..+    + +.+...|..+
T Consensus        99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r  140 (302)
T 3b9q_A           99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR  140 (302)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccc
Confidence            35789999999999999999998653    3 3444556543

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.21  E-value=0.0022  Score=58.07  Aligned_cols=30  Identities=17%  Similarity=0.395  Sum_probs=24.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCC--cEEEeC
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLN--YTTVNR  303 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~--~~~i~~  303 (369)
                      =++|.|+|||||||+++.++...+  ...++.
T Consensus        51 g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~   82 (254)
T 1ixz_A           51 GVLLVGPPGVGKTHLARAVAGEARVPFITASG   82 (254)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHTTCCEEEEEH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEEeeH
Confidence            389999999999999999998764  444443

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.19  E-value=0.021  Score=56.32  Aligned_cols=37  Identities=30%  Similarity=0.336  Sum_probs=30.2

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhcc------CCcEEEeCCcch
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKP------LNYTTVNRDTLG  307 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~------~~~~~i~~D~~~  307 (369)
                      .|.+|+++|++|+||||++..|+..      ..+.+++.|..+
T Consensus        99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r  141 (433)
T 2xxa_A           99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR  141 (433)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence            3578899999999999999999843      357788999764

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.19  E-value=0.011  Score=56.09  Aligned_cols=28  Identities=14%  Similarity=0.288  Sum_probs=23.9

Q ss_pred             ccccEEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         269 AALDSVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       269 ~~~~~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      ...+..+++.|+||+|||++++.+++.+
T Consensus        42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L   69 (318)
T 3te6_A           42 SSQNKLFYITNADDSTKFQLVNDVMDEL   69 (318)
T ss_dssp             TTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            3456788999999999999999998764

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=96.17  E-value=0.0021  Score=56.42  Aligned_cols=23  Identities=22%  Similarity=0.570  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++.|+||+||||||+.+.|...
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            57899999999999999999753

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=96.17  E-value=0.0049  Score=60.94  Aligned_cols=35  Identities=26%  Similarity=0.501  Sum_probs=29.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTL  306 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~  306 (369)
                      +.+|+++|+||+||||++..|+..+     .+.+++.|..
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~  138 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY  138 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence            4578999999999999999998763     5778888865

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=96.17  E-value=0.0025  Score=59.16  Aligned_cols=84  Identities=13%  Similarity=0.184  Sum_probs=46.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhccC-------CcEEEeCCcchhHHHHHHHHHHHH-------hCCCcEEEeCCC-CCHHHHH
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPL-------NYTTVNRDTLGSWQKCVSVMKAAL-------DSGLSVVVDNTN-PDKESRH  339 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~-------~~~~i~~D~~~~~~~~~~~~~~~l-------~~g~~vIiD~tn-~~~~~r~  339 (369)
                      +++.|+||+|||++++.+++.+       .+..++..................       .....+|||... .+.....
T Consensus        41 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~  120 (319)
T 2chq_A           41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQA  120 (319)
T ss_dssp             EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHH
T ss_pred             EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHH
Confidence            7999999999999999998863       245555443211111111111111       123467788653 4555555


Q ss_pred             HHHHHHHhcCCeEEEEEEe
Q psy4598         340 RYIEAAKQHGVRCIAVHMN  358 (369)
Q Consensus       340 ~~~~la~~~~~~v~~v~l~  358 (369)
                      .+.....+....+.++...
T Consensus       121 ~L~~~le~~~~~~~~i~~~  139 (319)
T 2chq_A          121 ALRRTMEMYSKSCRFILSC  139 (319)
T ss_dssp             TTGGGTSSSSSSEEEEEEE
T ss_pred             HHHHHHHhcCCCCeEEEEe
Confidence            5555554444445554443

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.17  E-value=0.037  Score=48.22  Aligned_cols=24  Identities=29%  Similarity=0.511  Sum_probs=21.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      ..-|+++|++|+||||+..+|...
T Consensus        12 ~~~i~~~G~~g~GKTsl~~~l~~~   35 (218)
T 1nrj_B           12 QPSIIIAGPQNSGKTSLLTLLTTD   35 (218)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcC
Confidence            356899999999999999999864

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.14  E-value=0.013  Score=52.03  Aligned_cols=33  Identities=18%  Similarity=0.221  Sum_probs=27.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc-----------CCcEEEeCCc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP-----------LNYTTVNRDT  305 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~-----------~~~~~i~~D~  305 (369)
                      .++.+.|+|||||||++..++..           .+..+++.+.
T Consensus        25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~   68 (243)
T 1n0w_A           25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG   68 (243)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred             eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence            68999999999999999999862           2467777665

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.14  E-value=0.029  Score=51.64  Aligned_cols=23  Identities=26%  Similarity=0.508  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++.++|++||||||+.+.++-.
T Consensus        38 e~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           38 EMVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             CEEEEECCTTSCHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcC
Confidence            57899999999999999999864

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.14  E-value=0.0027  Score=60.94  Aligned_cols=30  Identities=27%  Similarity=0.376  Sum_probs=25.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEe
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVN  302 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~  302 (369)
                      .-|+|.|+||+|||++|++++..++..++.
T Consensus        85 ~~iLL~GppGtGKT~la~ala~~~~~~~~~  114 (355)
T 2qp9_X           85 SGILLYGPPGTGKSYLAKAVATEANSTFFS  114 (355)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred             ceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence            458899999999999999999987755543

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.12  E-value=0.023  Score=54.70  Aligned_cols=37  Identities=22%  Similarity=0.408  Sum_probs=28.1

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC----C-cEEEeCCcch
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL----N-YTTVNRDTLG  307 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~----~-~~~i~~D~~~  307 (369)
                      .+.+|.|+|++||||||+.+.|+..+    + +.+...|..+
T Consensus       156 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r  197 (359)
T 2og2_A          156 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR  197 (359)
T ss_dssp             SSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred             CCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccc
Confidence            45799999999999999999998653    3 4444556543

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.10  E-value=0.0021  Score=59.42  Aligned_cols=34  Identities=26%  Similarity=0.458  Sum_probs=26.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCC--cEEEeCCc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLN--YTTVNRDT  305 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~--~~~i~~D~  305 (369)
                      +.-++|.|+||+|||++|+.+++.++  ...++...
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~   85 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATK   85 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchh
Confidence            45688999999999999999998865  34455443

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.08  E-value=0.0027  Score=61.20  Aligned_cols=29  Identities=34%  Similarity=0.550  Sum_probs=24.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEE
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTV  301 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i  301 (369)
                      .-|+|.|+||+|||++|+.+++.++..++
T Consensus        73 ~~ill~Gp~GtGKT~la~~la~~l~~~~~  101 (376)
T 1um8_A           73 SNILLIGPTGSGKTLMAQTLAKHLDIPIA  101 (376)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence            46899999999999999999998764433

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.08  E-value=0.0046  Score=53.19  Aligned_cols=24  Identities=21%  Similarity=0.458  Sum_probs=21.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      +.+|.++|++||||||++..|.+.
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            468999999999999999999875

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.07  E-value=0.0028  Score=56.00  Aligned_cols=35  Identities=9%  Similarity=0.087  Sum_probs=27.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTL  306 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~  306 (369)
                      ...++|.|+||+||||+++.+++..     .+.+++.+.+
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~   91 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH   91 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence            4678999999999999999998753     3456665443

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.07  E-value=0.0039  Score=59.80  Aligned_cols=34  Identities=15%  Similarity=0.263  Sum_probs=27.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEE--EeCCc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTT--VNRDT  305 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~--i~~D~  305 (369)
                      +.-|+|.|+||+|||++|++++...+..+  ++...
T Consensus       117 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~  152 (357)
T 3d8b_A          117 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISASS  152 (357)
T ss_dssp             CSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGG
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHH
Confidence            45789999999999999999999876544  44433

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=96.06  E-value=0.0022  Score=57.06  Aligned_cols=30  Identities=20%  Similarity=0.440  Sum_probs=24.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEE
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTV  301 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i  301 (369)
                      ...+++.||||+||||+|.++++.+.-.++
T Consensus        58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~   87 (212)
T 1tue_A           58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVI   87 (212)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHHHTCEEC
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhCCCee
Confidence            357999999999999999999987543333

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.05  E-value=0.0017  Score=62.52  Aligned_cols=29  Identities=31%  Similarity=0.484  Sum_probs=25.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEE
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTT  300 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~  300 (369)
                      ...|+|+|+|||||||+++.|++.+++.+
T Consensus        24 ~~~i~l~G~~G~GKTTl~~~la~~l~~~f   52 (359)
T 2ga8_A           24 RVCVILVGSPGSGKSTIAEELCQIINEKY   52 (359)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence            35689999999999999999999877665

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=96.04  E-value=0.015  Score=55.92  Aligned_cols=34  Identities=12%  Similarity=0.284  Sum_probs=27.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDT  305 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~  305 (369)
                      ..++++.|+||||||||+..++...     .+.+|+...
T Consensus        61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~   99 (356)
T 3hr8_A           61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH   99 (356)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence            3689999999999999999988652     466887765

>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}

Probab=96.04  E-value=0.0057  Score=57.45  Aligned_cols=98  Identities=15%  Similarity=0.170  Sum_probs=63.2

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccCC---cEEEeCCcchh---HHHHHHHHHHHH-hCCCcEEEeCCCCC--------
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPLN---YTTVNRDTLGS---WQKCVSVMKAAL-DSGLSVVVDNTNPD--------  334 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~~---~~~i~~D~~~~---~~~~~~~~~~~l-~~g~~vIiD~tn~~--------  334 (369)
                      ..+.+|++-|.-||||||..+.|.+.++   +.++....=..   .+.........+ ..|..||.|-...+        
T Consensus        84 ~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt~eE~~~~yl~R~~~~LP~~G~IvIfDRswYs~v~~~rv~  163 (304)
T 3czq_A           84 GKRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTETERGQWYFQRYVATFPTAGEFVLFDRSWYNRAGVEPVM  163 (304)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCCHHHHTSCTTHHHHTTCCCTTCEEEEEECGGGGTTHHHHH
T ss_pred             CCCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcChHHHhchHHHHHHHhcccCCeEEEEECCcchHHHHHHHh
Confidence            3478999999999999999999999874   33343221100   011122233334 78999999865432        


Q ss_pred             ----HHHHHH-HHH------HHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         335 ----KESRHR-YIE------AAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       335 ----~~~r~~-~~~------la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                          ...... +..      .+...|+++..+||++|.++..+|
T Consensus       164 g~~~~~e~~~~~~~In~FE~~L~~~G~~~lKf~L~Is~eeq~kR  207 (304)
T 3czq_A          164 GFCTPDQYEQFLKEAPRFEEMIANEGIHLFKFWINIGREMQLKR  207 (304)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEECCHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHhCCCeeEEEEEECCHHHHHHH
Confidence                211111 111      345578999999999999998887

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=96.04  E-value=0.0032  Score=54.78  Aligned_cols=31  Identities=16%  Similarity=0.292  Sum_probs=25.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcc-CCcEEEeCC
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKP-LNYTTVNRD  304 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~-~~~~~i~~D  304 (369)
                      +|+++|.+||||||+|++|+.. ....+|.+.
T Consensus         1 ~ilV~Gg~~SGKS~~A~~la~~~~~~~yiaT~   32 (180)
T 1c9k_A            1 MILVTGGARSGKSRHAEALIGDAPQVLYIATS   32 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCSCSSEEEEECC
T ss_pred             CEEEECCCCCcHHHHHHHHHhcCCCeEEEecC
Confidence            3789999999999999999976 235677663

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=96.03  E-value=0.023  Score=53.44  Aligned_cols=32  Identities=13%  Similarity=0.154  Sum_probs=25.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRD  304 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~-----~~~~~i~~D  304 (369)
                      .+++++|.||+|||||+..++..     .++.+++.+
T Consensus        69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE  105 (315)
T 3bh0_A           69 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE  105 (315)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence            68999999999999999998754     245666655

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.00  E-value=0.0034  Score=54.64  Aligned_cols=33  Identities=24%  Similarity=0.265  Sum_probs=25.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDT  305 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~  305 (369)
                      ..++|.|+||+||||+++.++...     .+.+++...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~   92 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPE   92 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHH
Confidence            678999999999999999998753     344455443

>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}

Probab=95.97  E-value=0.0038  Score=55.10  Aligned_cols=24  Identities=25%  Similarity=0.538  Sum_probs=20.6

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHh
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYL  293 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~  293 (369)
                      .|+.+++++|+||||||++|..+.
T Consensus         3 ~~~mi~l~tG~pGsGKT~~a~~~~   26 (199)
T 2r2a_A            3 AMAEICLITGTPGSGKTLKMVSMM   26 (199)
T ss_dssp             -CCCEEEEECCTTSSHHHHHHHHH
T ss_pred             cceeEEEEEeCCCCCHHHHHHHHH
Confidence            467799999999999999998863

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.97  E-value=0.0076  Score=57.16  Aligned_cols=26  Identities=27%  Similarity=0.441  Sum_probs=22.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      .+..+++.|+||+||||+++.+++..
T Consensus        44 ~~~~vli~G~~G~GKTtl~~~l~~~~   69 (386)
T 2qby_A           44 KPNNIFIYGLTGTGKTAVVKFVLSKL   69 (386)
T ss_dssp             CCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHH
Confidence            34678999999999999999998754

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=95.96  E-value=0.0034  Score=57.82  Aligned_cols=29  Identities=17%  Similarity=0.446  Sum_probs=23.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhccCC--cEEEeC
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPLN--YTTVNR  303 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~~--~~~i~~  303 (369)
                      |+|.|+|||||||+++.++...+  ...++.
T Consensus        76 vll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~  106 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVAGEARVPFITASG  106 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHTTCCEEEEEH
T ss_pred             EEEECCCcChHHHHHHHHHHHcCCCEEEecH
Confidence            89999999999999999998764  444443

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=95.96  E-value=0.019  Score=49.66  Aligned_cols=24  Identities=25%  Similarity=0.317  Sum_probs=20.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      ...|.++|++||||||+.+.|...
T Consensus        26 ~~~v~lvG~~g~GKSTLl~~l~g~   49 (210)
T 1pui_A           26 GIEVAFAGRSNAGKSSALNTLTNQ   49 (210)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            457899999999999999998753

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=95.95  E-value=0.0038  Score=53.88  Aligned_cols=25  Identities=16%  Similarity=0.401  Sum_probs=22.1

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      |..+++++|++||||||+.+.|...
T Consensus         5 ~~~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            5 MIPLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cceEEEEEeCCCCCHHHHHHHHHHh
Confidence            4578999999999999999998865

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=95.95  E-value=0.0013  Score=60.12  Aligned_cols=26  Identities=15%  Similarity=0.376  Sum_probs=22.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNY  298 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~  298 (369)
                      .-++|.|+||+|||++|+.++...+.
T Consensus        45 ~~vll~G~~GtGKT~la~~la~~~~~   70 (268)
T 2r62_A           45 KGVLLVGPPGTGKTLLAKAVAGEAHV   70 (268)
T ss_dssp             SCCCCBCSSCSSHHHHHHHHHHHHTC
T ss_pred             ceEEEECCCCCcHHHHHHHHHHHhCC
Confidence            34789999999999999999987643

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.95  E-value=0.022  Score=54.17  Aligned_cols=24  Identities=17%  Similarity=0.342  Sum_probs=21.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      ..++|.|+||+||||+++.++...
T Consensus        45 ~~~li~G~~G~GKTtl~~~l~~~~   68 (389)
T 1fnn_A           45 PRATLLGRPGTGKTVTLRKLWELY   68 (389)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            378999999999999999998754

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=95.94  E-value=0.05  Score=51.90  Aligned_cols=33  Identities=15%  Similarity=0.220  Sum_probs=26.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCCc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRDT  305 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~-----~~~~~i~~D~  305 (369)
                      .++++.|.||+|||||+..++..     .++.+++.+.
T Consensus        47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm   84 (338)
T 4a1f_A           47 SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM   84 (338)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC
Confidence            68999999999999999998765     2455666653

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=95.93  E-value=0.018  Score=54.10  Aligned_cols=35  Identities=20%  Similarity=0.376  Sum_probs=26.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTL  306 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~  306 (369)
                      +.+|.|+|++||||||+++.|+..+     .+.+...|..
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~  141 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTF  141 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCS
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCC
Confidence            4688999999999999999998542     3444455543

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=95.93  E-value=0.027  Score=53.04  Aligned_cols=24  Identities=25%  Similarity=0.555  Sum_probs=21.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      .++.|+|++||||||+.+.|...+
T Consensus        81 e~vaivG~sGsGKSTLl~ll~gl~  104 (306)
T 3nh6_A           81 QTLALVGPSGAGKSTILRLLFRFY  104 (306)
T ss_dssp             CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred             CEEEEECCCCchHHHHHHHHHcCC
Confidence            578999999999999999998753

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=95.93  E-value=0.0039  Score=54.84  Aligned_cols=24  Identities=25%  Similarity=0.459  Sum_probs=21.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      .++.|+|++||||||+.+.+....
T Consensus        21 ei~~l~GpnGsGKSTLl~~l~gl~   44 (207)
T 1znw_A           21 RVVVLSGPSAVGKSTVVRCLRERI   44 (207)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhC
Confidence            588999999999999999997654

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.91  E-value=0.039  Score=52.79  Aligned_cols=35  Identities=20%  Similarity=0.206  Sum_probs=27.5

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCC
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRD  304 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D  304 (369)
                      .....|.++|.||+||||++..|+..+     .+.+++.|
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D  116 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD  116 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence            345789999999999999999997542     45566666

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=95.91  E-value=0.047  Score=50.93  Aligned_cols=36  Identities=25%  Similarity=0.296  Sum_probs=28.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG  307 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~  307 (369)
                      +.+|.++|++|+||||++..|+..+     ...+++.|..+
T Consensus        98 ~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~  138 (295)
T 1ls1_A           98 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR  138 (295)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence            4577888999999999999998642     45677777653

>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*

Probab=95.90  E-value=0.0048  Score=56.15  Aligned_cols=32  Identities=13%  Similarity=0.212  Sum_probs=28.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRD  304 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D  304 (369)
                      .+|.|+|.+||||||+++.|.+.+++.+++..
T Consensus         2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~   33 (241)
T 1dek_A            2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLA   33 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSCEEECCTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhcCCeEEecC
Confidence            57899999999999999999998888877654

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=95.89  E-value=0.0047  Score=59.88  Aligned_cols=31  Identities=26%  Similarity=0.370  Sum_probs=26.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEe
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVN  302 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~  302 (369)
                      +.-|+|.|+||+|||++|++++...+..++.
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~  178 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFN  178 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHTTCEEEE
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhhcCcEEE
Confidence            4578999999999999999999987655443

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.87  E-value=0.05  Score=52.03  Aligned_cols=24  Identities=25%  Similarity=0.380  Sum_probs=21.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      -.++.|+|+||||||||+..++..
T Consensus       131 G~i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          131 QAITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999764

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=95.85  E-value=0.0052  Score=58.06  Aligned_cols=37  Identities=22%  Similarity=0.233  Sum_probs=29.6

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccC-------CcEEEeCCcc
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPL-------NYTTVNRDTL  306 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~-------~~~~i~~D~~  306 (369)
                      ..+.+|.|+|++||||||+++.|+..+       .+.++.+|.+
T Consensus        88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~  131 (312)
T 3aez_A           88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF  131 (312)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred             CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence            446799999999999999999998743       3567777764

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.84  E-value=0.0048  Score=59.94  Aligned_cols=33  Identities=18%  Similarity=0.275  Sum_probs=27.1

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccCCcEEEe
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVN  302 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~  302 (369)
                      +...+|++.|+|||||||+++.++...+..++.
T Consensus       167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~  199 (377)
T 1svm_A          167 PKKRYWLFKGPIDSGKTTLAAALLELCGGKALN  199 (377)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence            345689999999999999999999876555554

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=95.84  E-value=0.0041  Score=57.45  Aligned_cols=51  Identities=14%  Similarity=0.145  Sum_probs=38.2

Q ss_pred             hccCCCcccccccccccchhhhhhhccccccEEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         242 TYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       242 ~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      +++.-.||   |=..+..+-.++.....+....|+|.||||+|||+++.+++..
T Consensus        77 ~~l~~qg~---~~~~~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~  127 (267)
T 1u0j_A           77 KILELNGY---DPQYAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             HHHHHTTC---CHHHHHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHcCC---CHHHHHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence            34433454   3345666677777777666778999999999999999999974

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=95.84  E-value=0.015  Score=49.46  Aligned_cols=28  Identities=25%  Similarity=0.317  Sum_probs=22.6

Q ss_pred             cccccEEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         268 KAALDSVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       268 ~~~~~~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      +.....-|+++|.+|+|||||..+|...
T Consensus         3 ~~~~~~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            3 EKKSSYKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             CCCSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhC
Confidence            3334456899999999999999999754

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=95.82  E-value=0.012  Score=58.12  Aligned_cols=73  Identities=8%  Similarity=0.149  Sum_probs=42.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-------CcEEEeCCcchh-HHHH-----HHHHHHHHh-CCCcEEEeCCCC---C
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-------NYTTVNRDTLGS-WQKC-----VSVMKAALD-SGLSVVVDNTNP---D  334 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-------~~~~i~~D~~~~-~~~~-----~~~~~~~l~-~g~~vIiD~tn~---~  334 (369)
                      +.-++|.|+||+||||+++.++...       .+.+++...+.. +...     .......+. ....++||....   .
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~  209 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK  209 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC
Confidence            4568999999999999999998753       345666555421 1110     112223334 455778887532   2


Q ss_pred             HHHHHHHHHH
Q psy4598         335 KESRHRYIEA  344 (369)
Q Consensus       335 ~~~r~~~~~l  344 (369)
                      ......+...
T Consensus       210 ~~~q~~l~~~  219 (440)
T 2z4s_A          210 TGVQTELFHT  219 (440)
T ss_dssp             HHHHHHHHHH
T ss_pred             hHHHHHHHHH
Confidence            2445555444

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=95.82  E-value=0.0039  Score=55.48  Aligned_cols=25  Identities=24%  Similarity=0.495  Sum_probs=21.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      ..++.|+||+||||||+.+.|....
T Consensus        23 G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           23 IYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhhC
Confidence            3578999999999999999998754

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=95.77  E-value=0.0025  Score=54.88  Aligned_cols=25  Identities=20%  Similarity=0.551  Sum_probs=21.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      |+++|.++|++||||||+++.|...
T Consensus         1 m~~~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            1 MSLILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             --CEEEEEESCHHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHH
Confidence            3568899999999999999999865

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=95.77  E-value=0.0056  Score=60.62  Aligned_cols=34  Identities=21%  Similarity=0.343  Sum_probs=26.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-CcE--EEeCCc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-NYT--TVNRDT  305 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-~~~--~i~~D~  305 (369)
                      +.-|+|.||||+|||++|++++... +..  .++...
T Consensus       167 ~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~  203 (444)
T 2zan_A          167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD  203 (444)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC-
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHH
Confidence            3578999999999999999999887 444  344433

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=95.77  E-value=0.018  Score=55.30  Aligned_cols=34  Identities=12%  Similarity=0.324  Sum_probs=27.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCCc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRDT  305 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~-----~~~~~i~~D~  305 (369)
                      ..++++.|+|||||||+|..++..     ..+.+++.+.
T Consensus        63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~  101 (356)
T 1u94_A           63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH  101 (356)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            358899999999999999998764     2577888754

>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20

Probab=95.76  E-value=0.032  Score=52.40  Aligned_cols=87  Identities=8%  Similarity=0.097  Sum_probs=54.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhcc--------CCcEEEeCCc--ch--hHHHHHHHHHHHH--hCCCcEEEeCC-CCCHH
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKP--------LNYTTVNRDT--LG--SWQKCVSVMKAAL--DSGLSVVVDNT-NPDKE  336 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~--------~~~~~i~~D~--~~--~~~~~~~~~~~~l--~~g~~vIiD~t-n~~~~  336 (369)
                      +..+++.||||+||||+++.+++.        .+...++.+.  ..  ..+.+.+.+...-  ...+.||||.. ..+..
T Consensus        18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~   97 (305)
T 2gno_A           18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ   97 (305)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHH
Confidence            468899999999999999999873        3566777642  22  1222333222111  12346778764 34667


Q ss_pred             HHHHHHHHHHhcCCeEEEEEEe
Q psy4598         337 SRHRYIEAAKQHGVRCIAVHMN  358 (369)
Q Consensus       337 ~r~~~~~la~~~~~~v~~v~l~  358 (369)
                      ..+.+++...+..-.++++.+.
T Consensus        98 a~naLLk~LEep~~~t~fIl~t  119 (305)
T 2gno_A           98 AANAFLKALEEPPEYAVIVLNT  119 (305)
T ss_dssp             HHHHTHHHHHSCCTTEEEEEEE
T ss_pred             HHHHHHHHHhCCCCCeEEEEEE
Confidence            7777888877765555555554

>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily, cyanobacteria; 1.40A {Synechocystis SP} SCOP: c.108.1.10 PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A* 2b1q_A* 2b1r_A* 2d2v_A*

Probab=95.72  E-value=0.0056  Score=55.21  Aligned_cols=65  Identities=14%  Similarity=0.208  Sum_probs=0.0

Q ss_pred             CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHc
Q psy4598          24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSL  103 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l  103 (369)
                      +..+++||+||||+.+..             ..+...++|++++ +|++++|+|-.+            ...+..+++.+
T Consensus         2 ~~~li~~DlDGTLl~~~~-------------~~~~~~~~l~~~~-~gi~v~iaTGR~------------~~~~~~~~~~l   55 (244)
T 1s2o_A            2 RQLLLISDLDNTWVGDQQ-------------ALEHLQEYLGDRR-GNFYLAYATGRS------------YHSARELQKQV   55 (244)
T ss_dssp             CSEEEEECTBTTTBSCHH-------------HHHHHHHHHHTTG-GGEEEEEECSSC------------HHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCcCCHH-------------HHHHHHHHHHHhc-CCCEEEEEcCCC------------HHHHHHHHHHc


Q ss_pred             CCC-eEEEEecC
Q psy4598         104 NVP-VQMFVATQ  114 (369)
Q Consensus       104 ~i~-~~~~~~~~  114 (369)
                      ++. ...++|..
T Consensus        56 ~l~~~~~~I~~N   67 (244)
T 1s2o_A           56 GLMEPDYWLTAV   67 (244)
T ss_dssp             TCCCCSEEEETT
T ss_pred             CCCCCCEEEECC

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=95.69  E-value=0.0045  Score=61.47  Aligned_cols=25  Identities=20%  Similarity=0.506  Sum_probs=22.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLN  297 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~  297 (369)
                      .-++|.||||+|||++|+++++.++
T Consensus        64 ~~iLl~GppGtGKT~la~ala~~l~   88 (456)
T 2c9o_A           64 RAVLLAGPPGTGKTALALAIAQELG   88 (456)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHhC
Confidence            4589999999999999999999865

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=95.65  E-value=0.053  Score=52.14  Aligned_cols=23  Identities=26%  Similarity=0.569  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++.|.||+||||||+.+.++-.
T Consensus        31 e~~~llGpsGsGKSTLLr~iaGl   53 (359)
T 3fvq_A           31 EILFIIGASGCGKTTLLRCLAGF   53 (359)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCchHHHHHHHHhcC
Confidence            57899999999999999999864

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=95.64  E-value=0.0056  Score=61.26  Aligned_cols=34  Identities=15%  Similarity=0.323  Sum_probs=26.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCc--EEEeCCc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNY--TTVNRDT  305 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~--~~i~~D~  305 (369)
                      |.-|+|.||||+|||+++++++...+.  ..++...
T Consensus        49 p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~   84 (476)
T 2ce7_A           49 PKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSD   84 (476)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHH
Confidence            445899999999999999999988654  4445443

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=95.60  E-value=0.049  Score=52.53  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++.++|++||||||+.+.+.-.
T Consensus        55 ei~~IiGpnGaGKSTLlr~i~GL   77 (366)
T 3tui_C           55 QIYGVIGASGAGKSTLIRCVNLL   77 (366)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CEEEEEcCCCchHHHHHHHHhcC
Confidence            57899999999999999999864

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=95.58  E-value=0.074  Score=50.59  Aligned_cols=35  Identities=11%  Similarity=0.126  Sum_probs=28.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhcc-----------CCcEEEeCCc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKP-----------LNYTTVNRDT  305 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~-----------~~~~~i~~D~  305 (369)
                      ...++++.|+|||||||++..++..           .++.+|+.+.
T Consensus       121 ~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~  166 (343)
T 1v5w_A          121 SMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN  166 (343)
T ss_dssp             SSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            3478999999999999999998763           2467888766

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=95.58  E-value=0.0065  Score=53.46  Aligned_cols=33  Identities=18%  Similarity=0.351  Sum_probs=25.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCCc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRDT  305 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~-----~~~~~i~~D~  305 (369)
                      .++++.|+|||||||+++.++..     ..+.+++.+.
T Consensus        24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~   61 (235)
T 2w0m_A           24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE   61 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc
Confidence            68899999999999999999843     2455666544

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.58  E-value=0.0062  Score=56.50  Aligned_cols=34  Identities=18%  Similarity=0.414  Sum_probs=26.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTL  306 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~  306 (369)
                      ..++|.|+||+|||++|+.+++..     ....++...+
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~   86 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY   86 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGC
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccc
Confidence            478999999999999999999864     2455655443

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=95.56  E-value=0.022  Score=53.58  Aligned_cols=23  Identities=30%  Similarity=0.348  Sum_probs=20.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~  294 (369)
                      ..++++.|+||||||+++..++.
T Consensus        98 g~i~~i~G~~gsGKT~la~~la~  120 (322)
T 2i1q_A           98 QSVTEFAGVFGSGKTQIMHQSCV  120 (322)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            36899999999999999999874

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=95.52  E-value=0.0083  Score=50.87  Aligned_cols=26  Identities=19%  Similarity=0.408  Sum_probs=22.5

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      .-.++.|.|++||||||+.+.++..+
T Consensus        32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l   57 (158)
T 1htw_A           32 KAIMVYLNGDLGAGKTTLTRGMLQGI   57 (158)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            34689999999999999999998754

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=95.45  E-value=0.067  Score=51.44  Aligned_cols=23  Identities=17%  Similarity=0.372  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++.|.|++||||||+.+.++-.
T Consensus        30 e~~~llGpnGsGKSTLLr~iaGl   52 (359)
T 2yyz_A           30 EFVALLGPSGCGKTTTLLMLAGI   52 (359)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEEcCCCchHHHHHHHHHCC
Confidence            57899999999999999999864

>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*

Probab=95.45  E-value=0.043  Score=51.86  Aligned_cols=26  Identities=15%  Similarity=0.267  Sum_probs=22.8

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      .+..+++.|+||+|||++|+.+++.+
T Consensus        23 ~~~a~L~~G~~G~GKt~~a~~la~~l   48 (334)
T 1a5t_A           23 GHHALLIQALPGMGDDALIYALSRYL   48 (334)
T ss_dssp             CCSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cceeEEEECCCCchHHHHHHHHHHHH
Confidence            45678999999999999999998764

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.43  E-value=0.01  Score=54.00  Aligned_cols=34  Identities=24%  Similarity=0.405  Sum_probs=26.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTL  306 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~  306 (369)
                      .-|+|.|+||+|||++|+.+.+..     .+..++...+
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~   68 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL   68 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS
T ss_pred             CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC
Confidence            357899999999999999998864     3566665544

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=95.42  E-value=0.02  Score=54.21  Aligned_cols=104  Identities=18%  Similarity=0.309  Sum_probs=69.1

Q ss_pred             CCCceEEEEecCCceeecCCCCCCCCCcccc-ccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHH
Q psy4598          22 CNSAKIASFDLDGTLITTKSGKVFPVDTHDW-KLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKII  100 (369)
Q Consensus        22 ~~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~-~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l  100 (369)
                      ....+.+.+|||+||+...+.    .  ..| ...-|++.+.|+.+. +.|.|+|+|...            ...+..++
T Consensus       137 ~~~k~tLVLDLDeTLvh~~~~----~--~~~~~~~RP~l~eFL~~l~-~~yeivIfTas~------------~~ya~~vl  197 (320)
T 3shq_A          137 REGKKLLVLDIDYTLFDHRSP----A--ETGTELMRPYLHEFLTSAY-EDYDIVIWSATS------------MRWIEEKM  197 (320)
T ss_dssp             CTTCEEEEECCBTTTBCSSSC----C--SSHHHHBCTTHHHHHHHHH-HHEEEEEECSSC------------HHHHHHHH
T ss_pred             cCCCcEEEEeccccEEccccc----C--CCcceEeCCCHHHHHHHHH-hCCEEEEEcCCc------------HHHHHHHH
Confidence            345799999999999987531    1  222 235799999999998 569999999843            34567777


Q ss_pred             HHcCCC----eE--EEEec-C--------CC-CCCCCchhHHHHHHHHhcCCccccCCccEEeeCcc
Q psy4598         101 KSLNVP----VQ--MFVAT-Q--------YD-RYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAA  151 (369)
Q Consensus       101 ~~l~i~----~~--~~~~~-~--------~~-~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~  151 (369)
                      +.++..    +.  +|... .        .. .+-|+-..+|..+    .   +-+++++++|-|+.
T Consensus       198 d~Ld~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~vKdLs~Lw~~~----p---~rdl~~tIiIDdsp  257 (320)
T 3shq_A          198 RLLGVASNDNYKVMFYLDSTAMISVHVPERGVVDVKPLGVIWALY----K---QYNSSNTIMFDDIR  257 (320)
T ss_dssp             HHTTCTTCSSCCCCEEECGGGCEEEEETTTEEEEECCHHHHHHHC----T---TCCGGGEEEEESCG
T ss_pred             HHhCCCCCcceeEEEEEcCCccccccccCCCCEEEEEhHHhhccc----C---CCChhHEEEEeCCh
Confidence            777541    22  22211 0        01 2456655565442    1   46789999999997

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=95.42  E-value=0.061  Score=51.64  Aligned_cols=87  Identities=21%  Similarity=0.263  Sum_probs=47.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch-----------------hHHHHHHHHHHHHhCCC-cEEE
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG-----------------SWQKCVSVMKAALDSGL-SVVV  328 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~-----------------~~~~~~~~~~~~l~~g~-~vIi  328 (369)
                      ..+|+++|++||||||+.+.+....     +....-.|.+.                 ....+...+..++...- .+++
T Consensus       123 ~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~Pdvill  202 (356)
T 3jvv_A          123 RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALREDPDIILV  202 (356)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSCCSEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhCcCEEec
Confidence            3589999999999999999986542     11222222210                 00112334455555544 4556


Q ss_pred             eCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCC
Q psy4598         329 DNTNPDKESRHRYIEAAKQHGVRCIAVHMNIS  360 (369)
Q Consensus       329 D~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~  360 (369)
                      |=.. +.+....+++.+. .|..+..+.-+.+
T Consensus       203 DEp~-d~e~~~~~~~~~~-~G~~vl~t~H~~~  232 (356)
T 3jvv_A          203 GEMR-DLETIRLALTAAE-TGHLVFGTLHTTS  232 (356)
T ss_dssp             SCCC-SHHHHHHHHHHHH-TTCEEEEEESCSS
T ss_pred             CCCC-CHHHHHHHHHHHh-cCCEEEEEEccCh
Confidence            6554 6666666565544 4665544433333

>4g63_A Cytosolic IMP-GMP specific 5'-nucleotidase; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.70A {Legionella pneumophila subsp} PDB: 2bde_A

Probab=95.41  E-value=0.032  Score=55.46  Aligned_cols=100  Identities=16%  Similarity=0.164  Sum_probs=63.4

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHH-HHHHHHc---C--C--CeEEEEecCC-----------
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKA-EKIIKSL---N--V--PVQMFVATQY-----------  115 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i-~~~l~~l---~--i--~~~~~~~~~~-----------  115 (369)
                      ..|.++..|++|+++|.+++++||         +.-++...+ ..++...   |  .  .|+++++...           
T Consensus       187 k~~~l~~~L~~lr~~GKklFLiTN---------S~~~y~~~~M~y~~~~~~~~g~dWrdlFDvVIv~A~KP~FF~~~~~~  257 (470)
T 4g63_A          187 REKEVVEGLKHFIRYGKKIFILTN---------SEYSYSKLLLDYALSPFLDKGEHWQGLFEFVITLANKPRFFYDNLRF  257 (470)
T ss_dssp             CCHHHHHHHHHHHTTTCEEEEECS---------SCHHHHHHHHHHHTGGGSCTTCCGGGGCSEEEESCCTTHHHHSCCCE
T ss_pred             CCHhHHHHHHHHHHcCCeEEEeeC---------CCchHHHHHHHhhcccCCCCCCChhhhcCEEEECCCCCCcccCCCcc
Confidence            358899999999999999999999         344555543 3333211   1  2  3776665421           


Q ss_pred             -------------CCCCCCc---hhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHh-CCC
Q psy4598         116 -------------DRYRKPV---PGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFN-LNL  178 (369)
Q Consensus       116 -------------~~~rKP~---~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n-~Gi  178 (369)
                                   ....+|.   -|-|..+.+..    +..-.+++||||..               .+||..++. .|.
T Consensus       258 ~~v~~~~g~l~~~~~~~~~~vY~gGn~~~l~~ll----g~~g~~VLY~GDhi---------------~~Di~~~kk~~gW  318 (470)
T 4g63_A          258 LSVNPENGTMTNVHGPIVPGVYQGGNAKKFTEDL----GVGGDEILYIGDHI---------------YGDILRLKKDCNW  318 (470)
T ss_dssp             EEECTTTCCEEECCSSCCSEEEEECCHHHHHHHT----TCCGGGEEEEESCC---------------CSCHHHHHHSCCC
T ss_pred             eEEECCCCcccccccccCCceeecCcHHHHHHHh----CCCCCeEEEECCch---------------HHHHHhhhhccCC
Confidence                         0011121   33455555542    45567899999998               489877764 688


Q ss_pred             CccC
Q psy4598         179 AFFT  182 (369)
Q Consensus       179 ~f~~  182 (369)
                      ++..
T Consensus       319 rT~~  322 (470)
T 4g63_A          319 RTAL  322 (470)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            8843

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=95.41  E-value=0.061  Score=51.64  Aligned_cols=23  Identities=22%  Similarity=0.429  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++.|.|++||||||+.+.++-.
T Consensus        42 e~~~llGpnGsGKSTLLr~iaGl   64 (355)
T 1z47_A           42 EMVGLLGPSGSGKTTILRLIAGL   64 (355)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            57899999999999999999854

>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1

Probab=95.40  E-value=0.024  Score=54.66  Aligned_cols=33  Identities=9%  Similarity=0.256  Sum_probs=27.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCCc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRDT  305 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~-----~~~~~i~~D~  305 (369)
                      .++++.|+||||||||+..++..     ..+.+++.+.
T Consensus        75 ~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~  112 (366)
T 1xp8_A           75 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH  112 (366)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred             cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence            57899999999999999998764     3578888765

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=95.38  E-value=0.0064  Score=57.23  Aligned_cols=24  Identities=25%  Similarity=0.387  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCC
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLN  297 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~  297 (369)
                      -++|.|+||+|||++++.+++.++
T Consensus        48 ~vll~G~pGtGKT~la~~la~~~~   71 (331)
T 2r44_A           48 HILLEGVPGLAKTLSVNTLAKTMD   71 (331)
T ss_dssp             CEEEESCCCHHHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCcHHHHHHHHHHHhC
Confidence            479999999999999999998764

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=95.38  E-value=0.034  Score=52.44  Aligned_cols=34  Identities=15%  Similarity=0.218  Sum_probs=27.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhcc-----------CCcEEEeCCc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKP-----------LNYTTVNRDT  305 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~-----------~~~~~i~~D~  305 (369)
                      ..++++.|+|||||||++..++..           .++.+++.+.
T Consensus       107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~  151 (324)
T 2z43_A          107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG  151 (324)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred             CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence            368999999999999999998753           2467888775

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=95.37  E-value=0.018  Score=61.07  Aligned_cols=34  Identities=12%  Similarity=0.215  Sum_probs=29.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCC
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRD  304 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D  304 (369)
                      .++=|+|.||||+|||.+|++++...+..+++.+
T Consensus       510 ~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~  543 (806)
T 3cf2_A          510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIK  543 (806)
T ss_dssp             CCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECC
T ss_pred             CCceEEEecCCCCCchHHHHHHHHHhCCceEEec
Confidence            3456899999999999999999999988888754

>4as2_A Phosphorylcholine phosphatase; hydrolase, HAD superfamily, alkylammonium compounds; HET: BTB; 2.12A {Pseudomonas aeruginosa} PDB: 4as3_A*

Probab=95.34  E-value=0.01  Score=56.42  Aligned_cols=24  Identities=13%  Similarity=0.487  Sum_probs=18.6

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEec
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTN   78 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TN   78 (369)
                      +||++.+.|+.|+++|+.++|||-
T Consensus       144 ~~~~~~~l~~~l~~~G~~v~ivSa  167 (327)
T 4as2_A          144 VFSGQRELYNKLMENGIEVYVISA  167 (327)
T ss_dssp             ECHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             cCHHHHHHHHHHHHCCCEEEEEeC
Confidence            567777888888888888888876

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=95.33  E-value=0.08  Score=46.10  Aligned_cols=90  Identities=16%  Similarity=0.199  Sum_probs=51.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-------------CcEEEeCC-----cc------h--h-------HHHHHHHHHH
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-------------NYTTVNRD-----TL------G--S-------WQKCVSVMKA  318 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-------------~~~~i~~D-----~~------~--~-------~~~~~~~~~~  318 (369)
                      ..-|+++|.+|+|||||...|....             ........     .+      +  .       ..........
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~  108 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSS  108 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHH
Confidence            3568899999999999999997642             01111111     00      0  0       1222233333


Q ss_pred             HHhCC-----CcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCH
Q psy4598         319 ALDSG-----LSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISK  361 (369)
Q Consensus       319 ~l~~g-----~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~  361 (369)
                      .+...     ..+|+|.+.........+....+..+.++.+|.-.++.
T Consensus       109 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl  156 (223)
T 4dhe_A          109 YLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDK  156 (223)
T ss_dssp             HHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGG
T ss_pred             HHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEecccc
Confidence            33322     34678887653344455666667778887776665553

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=95.33  E-value=0.0041  Score=52.64  Aligned_cols=36  Identities=28%  Similarity=0.646  Sum_probs=28.8

Q ss_pred             eEEEEEcCCCCCcchhhhhccC-CCcccccccccccc
Q psy4598         224 QVLIMIGSQGSGKSSFVSTYLK-PLNYTTVNRDTLGS  259 (369)
Q Consensus       224 ~i~v~~g~~~~gks~~~~~~~~-~~~~~~i~r~~~~~  259 (369)
                      .+++++|+|||||||+++.+.. ..++..++.|.++.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~~r~   39 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQ   39 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHhhcCCcEEecHHHHHH
Confidence            5788999999999999998765 46777777766543

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=95.29  E-value=0.077  Score=52.28  Aligned_cols=32  Identities=19%  Similarity=0.254  Sum_probs=25.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc------CCcEEEeCC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP------LNYTTVNRD  304 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~------~~~~~i~~D  304 (369)
                      .+++++|+||+|||||+..++..      .++.+++..
T Consensus       201 ~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE  238 (444)
T 2q6t_A          201 SLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE  238 (444)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence            68999999999999999998753      246677664

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=95.29  E-value=0.012  Score=59.16  Aligned_cols=33  Identities=12%  Similarity=0.143  Sum_probs=26.9

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccCCcEEEe
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVN  302 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~  302 (369)
                      ..+.-|+|.|+||+|||++|++++...+..++.
T Consensus       236 ~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~  268 (489)
T 3hu3_A          236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFL  268 (489)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEE
T ss_pred             CCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence            345678999999999999999999987655443

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=95.24  E-value=0.058  Score=52.16  Aligned_cols=23  Identities=22%  Similarity=0.482  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++.|.|++||||||+.+.++-.
T Consensus        38 e~~~llGpnGsGKSTLLr~iaGl   60 (372)
T 1v43_A           38 EFLVLLGPSGCGKTTTLRMIAGL   60 (372)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCChHHHHHHHHHcC
Confidence            57899999999999999999854

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=95.23  E-value=0.011  Score=54.33  Aligned_cols=81  Identities=20%  Similarity=0.286  Sum_probs=46.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchh---------H--------HHHHHHHHHHHh-CCCcEEE
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGS---------W--------QKCVSVMKAALD-SGLSVVV  328 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~---------~--------~~~~~~~~~~l~-~g~~vIi  328 (369)
                      ..++.++|++||||||+.+.+...+     +-..+..+.+..         .        ..+...+..++. ....+++
T Consensus        25 g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL~~~p~illl  104 (261)
T 2eyu_A           25 MGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAALREDPDVIFV  104 (261)
T ss_dssp             SEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHHHHCCSEEEE
T ss_pred             CCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHHhhCCCEEEe
Confidence            3689999999999999999987632     333343333210         0        011223333333 3445666


Q ss_pred             eCCCCCHHHHHHHHHHHHhcCCeEEE
Q psy4598         329 DNTNPDKESRHRYIEAAKQHGVRCIA  354 (369)
Q Consensus       329 D~tn~~~~~r~~~~~la~~~~~~v~~  354 (369)
                      |-.. +.+....+++.+ ..|..+..
T Consensus       105 DEp~-D~~~~~~~l~~~-~~g~~vl~  128 (261)
T 2eyu_A          105 GEMR-DLETVETALRAA-ETGHLVFG  128 (261)
T ss_dssp             SCCC-SHHHHHHHHHHH-HTTCEEEE
T ss_pred             CCCC-CHHHHHHHHHHH-ccCCEEEE
Confidence            7655 777776666655 34554433

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=95.22  E-value=0.0092  Score=53.90  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++.++|++||||||+.+.++-.
T Consensus        32 e~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           32 EFVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcC
Confidence            57899999999999999999864

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=95.18  E-value=0.085  Score=52.13  Aligned_cols=89  Identities=13%  Similarity=0.182  Sum_probs=52.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCC-----cEEEeCCcc-----------------h-------hHHHHHHHHHHHHhCC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLN-----YTTVNRDTL-----------------G-------SWQKCVSVMKAALDSG  323 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~-----~~~i~~D~~-----------------~-------~~~~~~~~~~~~l~~g  323 (369)
                      ..|+|+|.||+|||||..+|....-     ..-+..|..                 +       ..+.+...+..+++.-
T Consensus        24 ~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~a  103 (456)
T 4dcu_A           24 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEA  103 (456)
T ss_dssp             CEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhC
Confidence            5799999999999999999976420     011111110                 0       0233444455555433


Q ss_pred             --CcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCH
Q psy4598         324 --LSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISK  361 (369)
Q Consensus       324 --~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~  361 (369)
                        ..+|+|...........+.+..++.+.++.++.=.++.
T Consensus       104 d~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~  143 (456)
T 4dcu_A          104 DVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDN  143 (456)
T ss_dssp             SEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC--
T ss_pred             CEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccc
Confidence              35568887644444556677777788888777666664

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=95.17  E-value=0.024  Score=48.19  Aligned_cols=36  Identities=28%  Similarity=0.457  Sum_probs=27.9

Q ss_pred             CCceEEEEEcCCCCCcchhhhhccCCCccccccccccc
Q psy4598         221 DKKQVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG  258 (369)
Q Consensus       221 ~~~~i~v~~g~~~~gks~~~~~~~~~~~~~~i~r~~~~  258 (369)
                      .+.+++.++|++||||||+++.++  .++..++.|.++
T Consensus         7 ~~gei~~l~G~nGsGKSTl~~~~~--~~~~~~~~d~~~   42 (171)
T 4gp7_A            7 PELSLVVLIGSSGSGKSTFAKKHF--KPTEVISSDFCR   42 (171)
T ss_dssp             ESSEEEEEECCTTSCHHHHHHHHS--CGGGEEEHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHc--cCCeEEccHHHH
Confidence            467899999999999999999765  355556655554

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=95.17  E-value=0.0091  Score=60.09  Aligned_cols=33  Identities=15%  Similarity=0.384  Sum_probs=26.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCC--cEEEeCCcc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLN--YTTVNRDTL  306 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~--~~~i~~D~~  306 (369)
                      =|+|.|+|||||||++++++...+  ...++...+
T Consensus        66 GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~  100 (499)
T 2dhr_A           66 GVLLVGPPGVGKTHLARAVAGEARVPFITASGSDF  100 (499)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHH
Confidence            389999999999999999998764  455555443

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=95.10  E-value=0.011  Score=54.92  Aligned_cols=23  Identities=30%  Similarity=0.502  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .+++|+|+||||||||++.++..
T Consensus        36 ~~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           36 EVIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            58999999999999999998753

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=95.08  E-value=0.017  Score=54.03  Aligned_cols=32  Identities=19%  Similarity=0.368  Sum_probs=28.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRD  304 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D  304 (369)
                      .++++.|++|+||||+++.+.+..++.+++..
T Consensus        32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~~~~~~   63 (350)
T 2qen_A           32 PLTLLLGIRRVGKSSLLRAFLNERPGILIDCR   63 (350)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHSSEEEEEHH
T ss_pred             CeEEEECCCcCCHHHHHHHHHHHcCcEEEEee
Confidence            58999999999999999999988777777754

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=95.05  E-value=0.01  Score=53.09  Aligned_cols=23  Identities=30%  Similarity=0.429  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++.++|++||||||+.+.++-.
T Consensus        31 e~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           31 EFVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             CEEEEEECTTSCHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            57899999999999999999754

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=95.04  E-value=0.092  Score=51.90  Aligned_cols=33  Identities=15%  Similarity=0.287  Sum_probs=26.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc----C--CcEEEeCCc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP----L--NYTTVNRDT  305 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~----~--~~~~i~~D~  305 (369)
                      .++++.|+||+|||||+..++..    .  ++.+++.+.
T Consensus       204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~  242 (454)
T 2r6a_A          204 DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEM  242 (454)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence            68999999999999999998763    1  466776553

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=95.03  E-value=0.16  Score=47.49  Aligned_cols=93  Identities=18%  Similarity=0.228  Sum_probs=54.8

Q ss_pred             cccccEEEEEEcCCCCcHHHHHHHHhccC--------C------cEEEeCC-cc--------h--------h-HHHHHHH
Q psy4598         268 KAALDSVLIMIGSQGSGKSSFVSTYLKPL--------N------YTTVNRD-TL--------G--------S-WQKCVSV  315 (369)
Q Consensus       268 ~~~~~~lIll~G~pGSGKSTla~~L~~~~--------~------~~~i~~D-~~--------~--------~-~~~~~~~  315 (369)
                      .++.+-.|.++|.||+|||||..+|....        +      ..++..+ ..        +        . -+.+...
T Consensus         6 ~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~   85 (308)
T 3iev_A            6 HHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEI   85 (308)
T ss_dssp             -CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHH
Confidence            44455789999999999999999997531        0      0111111 11        0        0 1233344


Q ss_pred             HHHHHhCC--CcEEEeCCCC-CHHHHHHHHHHHHhcCCeEEEEEEeCC
Q psy4598         316 MKAALDSG--LSVVVDNTNP-DKESRHRYIEAAKQHGVRCIAVHMNIS  360 (369)
Q Consensus       316 ~~~~l~~g--~~vIiD~tn~-~~~~r~~~~~la~~~~~~v~~v~l~~~  360 (369)
                      +...+..-  ..+|+|.+.. +......|++.++..+.++.++.=.++
T Consensus        86 ~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~D  133 (308)
T 3iev_A           86 AKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKID  133 (308)
T ss_dssp             HHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGG
T ss_pred             HHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECcc
Confidence            44455433  3567898864 555666557777777788766655444

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=95.02  E-value=0.012  Score=59.70  Aligned_cols=26  Identities=31%  Similarity=0.567  Sum_probs=23.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLN  297 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~  297 (369)
                      ...++|.||||+||||+++.++..++
T Consensus       108 g~~vll~Gp~GtGKTtlar~ia~~l~  133 (543)
T 3m6a_A          108 GPILCLAGPPGVGKTSLAKSIAKSLG  133 (543)
T ss_dssp             SCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            45789999999999999999998764

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=94.98  E-value=0.058  Score=53.34  Aligned_cols=32  Identities=13%  Similarity=0.225  Sum_probs=25.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRD  304 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D  304 (369)
                      .++++.|.||+|||||+..++...     ++.+++.+
T Consensus       198 ~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE  234 (444)
T 3bgw_A          198 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE  234 (444)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             cEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence            689999999999999999987642     45666654

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=94.98  E-value=0.018  Score=50.45  Aligned_cols=36  Identities=17%  Similarity=0.322  Sum_probs=27.5

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccC----CcEEEeCCc
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPL----NYTTVNRDT  305 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~----~~~~i~~D~  305 (369)
                      .....|+++|.+||||||+...|....    ....++.|.
T Consensus        28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~   67 (221)
T 2wsm_A           28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDV   67 (221)
T ss_dssp             HTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSC
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCC
Confidence            345789999999999999999998652    345566554

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=94.98  E-value=0.011  Score=51.72  Aligned_cols=22  Identities=18%  Similarity=0.430  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .+.++|++||||||+.+.++..
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5789999999999999998764

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=94.93  E-value=0.012  Score=53.07  Aligned_cols=24  Identities=33%  Similarity=0.657  Sum_probs=21.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      .++.|+|++||||||+.+.++...
T Consensus        32 e~~~i~G~nGsGKSTLl~~l~Gl~   55 (237)
T 2cbz_A           32 ALVAVVGQVGCGKSSLLSALLAEM   55 (237)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            578999999999999999998653

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=94.87  E-value=0.013  Score=53.81  Aligned_cols=22  Identities=23%  Similarity=0.336  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~  294 (369)
                      .+++|.|+||||||||+..++.
T Consensus        31 ~i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           31 TVGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4789999999999999998874

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=94.86  E-value=0.014  Score=54.94  Aligned_cols=25  Identities=28%  Similarity=0.501  Sum_probs=22.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      -.++.|+|++|||||||.+.|...+
T Consensus       126 Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          126 KNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCcHHHHHHHHhhhc
Confidence            4688999999999999999998654

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=94.86  E-value=0.45  Score=46.94  Aligned_cols=23  Identities=43%  Similarity=0.728  Sum_probs=19.8

Q ss_pred             CceEEEEEcCCCCCcchhhhhcc
Q psy4598         222 KKQVLIMIGSQGSGKSSFVSTYL  244 (369)
Q Consensus       222 ~~~i~v~~g~~~~gks~~~~~~~  244 (369)
                      ++.+++++|++|+||||.+.++.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA  121 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLA  121 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHH
Confidence            57889999999999999988653

>3j08_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=94.82  E-value=0.058  Score=55.95  Aligned_cols=84  Identities=18%  Similarity=0.197  Sum_probs=58.6

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCchhHHHHHHHHhc
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKN  134 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~  134 (369)
                      +.|+++++|++|+++|++++++|+..            ......+.+++|+.  .+++.     -.|.  -=..+++++.
T Consensus       458 l~~~~~~~i~~L~~~Gi~v~~~TGd~------------~~~a~~ia~~lgi~--~~~~~-----~~P~--~K~~~v~~l~  516 (645)
T 3j08_A          458 LKESAKPAVQELKRMGIKVGMITGDN------------WRSAEAISRELNLD--LVIAE-----VLPH--QKSEEVKKLQ  516 (645)
T ss_dssp             CTTTHHHHHHHHHHTTCEEEEECSSC------------HHHHHHHHHHHTCS--EEECS-----CCTT--CHHHHHHHHT
T ss_pred             chhHHHHHHHHHHHCCCEEEEEeCCC------------HHHHHHHHHHcCCC--EEEEe-----CCHH--hHHHHHHHHh
Confidence            57999999999999999999999832            23456677888874  12211     1121  2223333331


Q ss_pred             CCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc
Q psy4598         135 GDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF  180 (369)
Q Consensus       135 ~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f  180 (369)
                          -. +++.||||..                +|+.+.+.+|+-.
T Consensus       517 ----~~-~~v~~vGDg~----------------ND~~al~~A~vgi  541 (645)
T 3j08_A          517 ----AK-EVVAFVGDGI----------------NDAPALAQADLGI  541 (645)
T ss_dssp             ----TT-CCEEEEECSS----------------SCHHHHHHSSEEE
T ss_pred             ----hC-CeEEEEeCCH----------------hHHHHHHhCCEEE
Confidence                12 7899999999                8999999999765

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=94.81  E-value=0.016  Score=52.58  Aligned_cols=23  Identities=30%  Similarity=0.492  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++.++|++||||||+.+.++-.
T Consensus        29 e~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           29 SIIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             EEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            68899999999999999999764

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=94.81  E-value=0.015  Score=52.65  Aligned_cols=23  Identities=26%  Similarity=0.499  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++.+.|++||||||+.+.++-.
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999999864

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=94.79  E-value=0.0077  Score=56.78  Aligned_cols=23  Identities=30%  Similarity=0.553  Sum_probs=21.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhccCC
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPLN  297 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~~  297 (369)
                      |+|.|+||+|||++|+.+++..+
T Consensus        48 vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           48 VLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHSC
T ss_pred             EEEECCCCccHHHHHHHHHHhCc
Confidence            89999999999999999998764

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=94.77  E-value=0.015  Score=53.92  Aligned_cols=23  Identities=26%  Similarity=0.505  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++.++|++||||||+.+.++-.
T Consensus        35 e~~~iiGpnGsGKSTLl~~l~Gl   57 (275)
T 3gfo_A           35 EVTAILGGNGVGKSTLFQNFNGI   57 (275)
T ss_dssp             SEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHcC
Confidence            57899999999999999999754

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=94.77  E-value=0.016  Score=49.38  Aligned_cols=22  Identities=32%  Similarity=0.499  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~  294 (369)
                      .+.+++|++||||||+.+++.-
T Consensus        27 g~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           27 GFTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             SEEEEEECTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            3789999999999999999854

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=94.75  E-value=0.019  Score=46.93  Aligned_cols=22  Identities=27%  Similarity=0.593  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~  295 (369)
                      -|+++|.+|+||||+.+.+...
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4889999999999999999753

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=94.69  E-value=0.013  Score=51.94  Aligned_cols=22  Identities=23%  Similarity=0.425  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~  294 (369)
                      .++.+.|++||||||+.+.++-
T Consensus        23 e~~~liG~nGsGKSTLl~~l~G   44 (208)
T 3b85_A           23 TIVFGLGPAGSGKTYLAMAKAV   44 (208)
T ss_dssp             SEEEEECCTTSSTTHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhc
Confidence            5788999999999999999874

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=94.69  E-value=0.015  Score=53.34  Aligned_cols=23  Identities=43%  Similarity=0.602  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++.|+|++||||||+.+.++-.
T Consensus        33 e~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           33 DVISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            57899999999999999999864

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=94.69  E-value=0.013  Score=58.37  Aligned_cols=25  Identities=20%  Similarity=0.461  Sum_probs=21.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      +.-++|.|+||+|||++++.+++..
T Consensus       201 ~~~~LL~G~pG~GKT~la~~la~~l  225 (468)
T 3pxg_A          201 KNNPVLIGEPGVGKTAIAEGLAQQI  225 (468)
T ss_dssp             SCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHHHH
Confidence            3456899999999999999999874

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=94.69  E-value=0.021  Score=53.87  Aligned_cols=33  Identities=24%  Similarity=0.343  Sum_probs=26.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      .-|+++|++|+||||++.+|.++ ++.+++-|..
T Consensus       145 ~~vl~~G~sG~GKSt~a~~l~~~-g~~lv~dD~~  177 (314)
T 1ko7_A          145 VGVLITGDSGIGKSETALELIKR-GHRLVADDNV  177 (314)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEE
T ss_pred             EEEEEEeCCCCCHHHHHHHHHhc-CCceecCCeE
Confidence            56899999999999999999886 4555655543

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.68  E-value=0.016  Score=52.48  Aligned_cols=23  Identities=26%  Similarity=0.541  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++.+.|++||||||+.+.++-.
T Consensus        33 e~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           33 QIVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999999764

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=94.67  E-value=0.016  Score=52.76  Aligned_cols=23  Identities=30%  Similarity=0.491  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++.|+|++||||||+.+.++-.
T Consensus        36 e~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           36 EVIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            57899999999999999999765

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=94.66  E-value=0.026  Score=59.56  Aligned_cols=26  Identities=19%  Similarity=0.427  Sum_probs=22.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      .+.-++|.|+||+|||++|+.+++.+
T Consensus       200 ~~~~vLL~G~pGtGKT~la~~la~~l  225 (758)
T 3pxi_A          200 TKNNPVLIGEPGVGKTAIAEGLAQQI  225 (758)
T ss_dssp             SSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred             CCCCeEEECCCCCCHHHHHHHHHHHH
Confidence            34457999999999999999999874

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=94.65  E-value=0.016  Score=53.00  Aligned_cols=23  Identities=35%  Similarity=0.595  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++.++|++||||||+.+.++-.
T Consensus        34 e~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           34 DVTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999999754

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=94.64  E-value=0.017  Score=52.55  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++.|+|++||||||+.+.++-.
T Consensus        30 e~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           30 EVHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999999874

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=94.63  E-value=0.016  Score=51.96  Aligned_cols=24  Identities=33%  Similarity=0.588  Sum_probs=21.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      .++.++|++||||||+.+.++-..
T Consensus        35 e~~~i~G~nGsGKSTLl~~l~Gl~   58 (229)
T 2pze_A           35 QLLAVAGSTGAGKTSLLMMIMGEL   58 (229)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            578999999999999999998653

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=94.62  E-value=0.014  Score=52.07  Aligned_cols=23  Identities=26%  Similarity=0.416  Sum_probs=20.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++.++|++||||||+.+.++-.
T Consensus        36 e~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           36 NVVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            46789999999999999999764

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=94.62  E-value=0.036  Score=49.95  Aligned_cols=34  Identities=26%  Similarity=0.535  Sum_probs=27.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhcc----CCcEEEeCCc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKP----LNYTTVNRDT  305 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~----~~~~~i~~D~  305 (369)
                      +.+++++|.+|+||||++..|+..    ....+++.|.
T Consensus        14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~   51 (262)
T 1yrb_A           14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT   51 (262)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCS
T ss_pred             eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            478999999999999999999843    3566777763

>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A

Probab=94.60  E-value=0.021  Score=52.98  Aligned_cols=41  Identities=20%  Similarity=0.293  Sum_probs=35.1

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCe
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPV  107 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~  107 (369)
                      +.||+.+.++.|+++|++++|+|.            .+...++.+++++|+.+
T Consensus       142 l~~g~~e~i~~l~~~gi~v~ivSg------------g~~~~i~~i~~~~g~~~  182 (297)
T 4fe3_A          142 LKEGYENFFGKLQQHGIPVFIFSA------------GIGDVLEEVIRQAGVYH  182 (297)
T ss_dssp             BCBTHHHHHHHHHHTTCCEEEEEE------------EEHHHHHHHHHHTTCCC
T ss_pred             CCCcHHHHHHHHHHcCCeEEEEeC------------CcHHHHHHHHHHcCCCc
Confidence            679999999999999999999997            24556788899999853

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=94.59  E-value=0.016  Score=50.25  Aligned_cols=23  Identities=17%  Similarity=0.369  Sum_probs=19.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .+++++|+|||||||++..++..
T Consensus         4 ~i~vi~G~~gsGKTT~ll~~~~~   26 (184)
T 2orw_A            4 KLTVITGPMYSGKTTELLSFVEI   26 (184)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            57899999999999999666543

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=94.59  E-value=0.017  Score=53.18  Aligned_cols=23  Identities=39%  Similarity=0.642  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++.|+|++||||||+.+.++-.
T Consensus        51 ei~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           51 EVVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEEcCCCCcHHHHHHHHHcC
Confidence            57899999999999999999864

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=94.58  E-value=0.016  Score=54.44  Aligned_cols=24  Identities=25%  Similarity=0.394  Sum_probs=20.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      ..-++|.|+||+|||+++.+++..
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999998763

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=94.56  E-value=0.19  Score=47.63  Aligned_cols=36  Identities=25%  Similarity=0.367  Sum_probs=26.5

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCCc
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRDT  305 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~-----~~~~~i~~D~  305 (369)
                      ....+|.++|+||+||||+...|+..     ....+++.|.
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~   94 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP   94 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence            34578899999999999999999743     2344555444

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=94.51  E-value=0.018  Score=53.16  Aligned_cols=23  Identities=30%  Similarity=0.497  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++.|+|++|||||||.+.++-.
T Consensus        46 e~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           46 KVTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            57899999999999999999764

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=94.50  E-value=0.02  Score=50.97  Aligned_cols=33  Identities=18%  Similarity=0.445  Sum_probs=25.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc------CCcEEEeCCc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP------LNYTTVNRDT  305 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~------~~~~~i~~D~  305 (369)
                      .++++.|.||+|||+|+.+++..      ..+.+++.+.
T Consensus        31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~   69 (251)
T 2zts_A           31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE   69 (251)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccC
Confidence            68999999999999999987542      2455666543

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=94.50  E-value=0.018  Score=52.75  Aligned_cols=23  Identities=26%  Similarity=0.473  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++.++|++||||||+.+.++-.
T Consensus        47 e~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           47 TTCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcc
Confidence            57899999999999999999764

>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2

Probab=94.49  E-value=0.021  Score=53.82  Aligned_cols=33  Identities=24%  Similarity=0.365  Sum_probs=26.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      .-|+++|+||+||||+|.+|.++ |+.+++-|..
T Consensus       148 ~gvli~G~sG~GKStlal~l~~~-G~~lv~DD~v  180 (312)
T 1knx_A          148 VGVLLTGRSGIGKSECALDLINK-NHLFVGDDAI  180 (312)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTT-TCEEEEEEEE
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc-CCEEEeCCEE
Confidence            46899999999999999999874 4556655543

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=94.49  E-value=0.11  Score=49.82  Aligned_cols=26  Identities=31%  Similarity=0.469  Sum_probs=22.0

Q ss_pred             ccEEEEE--EcCCCCcHHHHHHHHhccC
Q psy4598         271 LDSVLIM--IGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       271 ~~~lIll--~G~pGSGKSTla~~L~~~~  296 (369)
                      .+..+++  .|+||+||||+++.+++..
T Consensus        49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~   76 (412)
T 1w5s_A           49 SDVNMIYGSIGRVGIGKTTLAKFTVKRV   76 (412)
T ss_dssp             CCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence            3567888  9999999999999998653

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.48  E-value=0.019  Score=52.65  Aligned_cols=23  Identities=22%  Similarity=0.430  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++.|.|++||||||+.+.++-.
T Consensus        42 ei~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           42 EIFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTS
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            57899999999999999999864

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=94.47  E-value=0.02  Score=52.76  Aligned_cols=23  Identities=35%  Similarity=0.541  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++.|+|++||||||+.+.++-.
T Consensus        47 e~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           47 EVHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999999874

>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}

Probab=94.46  E-value=0.018  Score=58.00  Aligned_cols=23  Identities=17%  Similarity=0.297  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccC
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      -|+|.|+||+|||++|+.++...
T Consensus        43 ~VLL~GpPGtGKT~LAraLa~~l   65 (500)
T 3nbx_X           43 SVFLLGPPGIAKSLIARRLKFAF   65 (500)
T ss_dssp             EEEEECCSSSSHHHHHHHGGGGB
T ss_pred             eeEeecCchHHHHHHHHHHHHHH
Confidence            47999999999999999999876

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=94.44  E-value=0.019  Score=52.34  Aligned_cols=23  Identities=26%  Similarity=0.576  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++.+.|++||||||+.+.++-.
T Consensus        27 e~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           27 EILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            57899999999999999998754

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=94.39  E-value=0.02  Score=52.66  Aligned_cols=23  Identities=30%  Similarity=0.512  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++.++|++||||||+.+.++-.
T Consensus        34 e~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           34 ECLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            57899999999999999999764

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=94.39  E-value=0.026  Score=53.13  Aligned_cols=24  Identities=25%  Similarity=0.473  Sum_probs=21.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++++++|++||||||+.+.|...
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhh
Confidence            468999999999999999999843

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=94.35  E-value=0.02  Score=53.06  Aligned_cols=23  Identities=22%  Similarity=0.400  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++.|+|++||||||+.+.++-.
T Consensus        48 e~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           48 DKWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            57899999999999999999764

>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2

Probab=94.34  E-value=0.14  Score=51.25  Aligned_cols=32  Identities=16%  Similarity=0.145  Sum_probs=25.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc------CCcEEEeCC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP------LNYTTVNRD  304 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~------~~~~~i~~D  304 (369)
                      .++++.|+||+|||||+..++..      .++.+++.+
T Consensus       243 ~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E  280 (503)
T 1q57_A          243 EVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE  280 (503)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred             eEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence            68999999999999999998753      245666655

>4gxt_A A conserved functionally unknown protein; structural genomics, PSI-biology; 1.82A {Anaerococcus prevotii}

Probab=94.32  E-value=0.032  Score=54.19  Aligned_cols=88  Identities=10%  Similarity=0.123  Sum_probs=56.9

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC----CeEEEEecC-----CC---------
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV----PVQMFVATQ-----YD---------  116 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i----~~~~~~~~~-----~~---------  116 (369)
                      ++|++.+.++.|+++|++++|||-            .+...++.+.+.+|+    |-+-+++..     +.         
T Consensus       222 ~~p~~~eLi~~L~~~G~~v~IVSg------------g~~~~v~~ia~~lg~~y~ip~~~Vig~~l~~~~dG~~tg~~~~~  289 (385)
T 4gxt_A          222 TLDEMVDLYRSLEENGIDCYIVSA------------SFIDIVRAFATDTNNNYKMKEEKVLGLRLMKDDEGKILPKFDKD  289 (385)
T ss_dssp             ECHHHHHHHHHHHHTTCEEEEEEE------------EEHHHHHHHHHCTTSSCCCCGGGEEEECEEECTTCCEEEEECTT
T ss_pred             eCHHHHHHHHHHHHCCCeEEEEcC------------CcHHHHHHHHHHhCcccCCCcceEEEeEEEEecCCceeeeecCc
Confidence            599999999999999999999997            234556777787764    322222221     10         


Q ss_pred             ---CCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHh
Q psy4598         117 ---RYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFN  175 (369)
Q Consensus       117 ---~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n  175 (369)
                         .++.-++..++.+++.     .++...++++||+.                .|+.+-..
T Consensus       290 ~p~~~~~gK~~~i~~~~~~-----~~~~~~i~a~GDs~----------------~D~~ML~~  330 (385)
T 4gxt_A          290 FPISIREGKVQTINKLIKN-----DRNYGPIMVGGDSD----------------GDFAMLKE  330 (385)
T ss_dssp             SCCCSTHHHHHHHHHHTCC-----TTEECCSEEEECSG----------------GGHHHHHH
T ss_pred             cceeCCCchHHHHHHHHHh-----cCCCCcEEEEECCH----------------hHHHHHhc
Confidence               0111133344444432     34567899999999                68887765

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=94.30  E-value=0.021  Score=49.07  Aligned_cols=23  Identities=30%  Similarity=0.644  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      ..|+|+|++|||||||.+.+...
T Consensus        30 ~kv~lvG~~g~GKSTLl~~l~~~   52 (191)
T 1oix_A           30 FKVVLIGDSGVGKSNLLSRFTRN   52 (191)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            46899999999999999999754

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=94.27  E-value=0.23  Score=50.70  Aligned_cols=24  Identities=29%  Similarity=0.582  Sum_probs=21.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      ..+.++|++||||||+.+.+...+
T Consensus       370 e~~~ivG~sGsGKSTll~~l~g~~  393 (587)
T 3qf4_A          370 SLVAVLGETGSGKSTLMNLIPRLI  393 (587)
T ss_dssp             CEEEEECSSSSSHHHHHHTTTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCc
Confidence            578999999999999999998754

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=94.26  E-value=0.024  Score=46.68  Aligned_cols=23  Identities=30%  Similarity=0.579  Sum_probs=20.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .-|+++|.+|+||||+.+.+...
T Consensus         6 ~~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            6 IKMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            45789999999999999999753

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=94.26  E-value=0.022  Score=52.06  Aligned_cols=23  Identities=30%  Similarity=0.612  Sum_probs=20.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++.+.|++||||||+.+.++-.
T Consensus        32 e~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           32 DILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             CEEEEECCSSSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            57899999999999999999764

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=94.24  E-value=0.03  Score=47.33  Aligned_cols=22  Identities=23%  Similarity=0.386  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~  294 (369)
                      .-|+++|++|+||||+.+.|..
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~   29 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTG   29 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhC
Confidence            5789999999999999999986

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=94.23  E-value=0.065  Score=56.39  Aligned_cols=72  Identities=15%  Similarity=0.305  Sum_probs=0.0

Q ss_pred             hhhhhhccccccEEEEEEcCCCCcHHHHHHHHhccC----------CcEEEeCCcc---------hhHHHHHHHHHHHHh
Q psy4598         261 QKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPL----------NYTTVNRDTL---------GSWQKCVSVMKAALD  321 (369)
Q Consensus       261 ~~~~~~~~~~~~~lIll~G~pGSGKSTla~~L~~~~----------~~~~i~~D~~---------~~~~~~~~~~~~~l~  321 (369)
                      ...........+.-++|+|+||+|||++++.+++.+          +..++..|.-         ..+....+.+...+.
T Consensus       196 ~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~  275 (758)
T 1r6b_X          196 ERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLE  275 (758)
T ss_dssp             HHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHS
T ss_pred             HHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHH


Q ss_pred             C--CCcEEEeCCC
Q psy4598         322 S--GLSVVVDNTN  332 (369)
Q Consensus       322 ~--g~~vIiD~tn  332 (369)
                      .  +..++||...
T Consensus       276 ~~~~~iL~IDEi~  288 (758)
T 1r6b_X          276 QDTNSILFIDEIH  288 (758)
T ss_dssp             SSSCEEEEETTTT
T ss_pred             hcCCeEEEEechH

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=94.23  E-value=0.033  Score=52.13  Aligned_cols=34  Identities=21%  Similarity=0.312  Sum_probs=26.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTL  306 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~  306 (369)
                      .-|+|.|+||+|||++|+.+....     .++.++...+
T Consensus        26 ~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~   64 (304)
T 1ojl_A           26 ATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAAL   64 (304)
T ss_dssp             SCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSC
T ss_pred             CcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCC
Confidence            457899999999999999998742     4566775554

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=94.20  E-value=0.025  Score=48.82  Aligned_cols=23  Identities=30%  Similarity=0.644  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .-|+++|++||||||+.+.+...
T Consensus         6 ~kv~lvG~~g~GKSTLl~~l~~~   28 (199)
T 2f9l_A            6 FKVVLIGDSGVGKSNLLSRFTRN   28 (199)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECcCCCCHHHHHHHHhcC
Confidence            45789999999999999999764

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=94.20  E-value=0.028  Score=54.25  Aligned_cols=25  Identities=24%  Similarity=0.488  Sum_probs=21.9

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      ...+|+++|++||||||+.+.+...
T Consensus       135 ~g~~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhh
Confidence            3478999999999999999999764

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=94.18  E-value=0.014  Score=54.25  Aligned_cols=39  Identities=26%  Similarity=0.416  Sum_probs=31.0

Q ss_pred             CCCceEEEEEcCCCCCcchhhhhccCC--Cccccccccccc
Q psy4598         220 HDKKQVLIMIGSQGSGKSSFVSTYLKP--LNYTTVNRDTLG  258 (369)
Q Consensus       220 ~~~~~i~v~~g~~~~gks~~~~~~~~~--~~~~~i~r~~~~  258 (369)
                      .....++|++|+|||||||+++.+...  .++..|+.|+++
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R   70 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFK   70 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhH
Confidence            344678899999999999999987543  377888888775

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=94.17  E-value=0.021  Score=54.93  Aligned_cols=24  Identities=25%  Similarity=0.684  Sum_probs=21.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      .+++++|++||||||+.+.|...+
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~~  199 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQEI  199 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            578999999999999999998764

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=94.15  E-value=0.022  Score=52.48  Aligned_cols=22  Identities=36%  Similarity=0.715  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .+.++|++||||||+.+.|...
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~   25 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKS   25 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999753

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=94.13  E-value=0.027  Score=54.06  Aligned_cols=25  Identities=28%  Similarity=0.501  Sum_probs=21.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLN  297 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~  297 (369)
                      ..+.++|++||||||+++.|+..++
T Consensus       171 ~k~~IvG~nGsGKSTLlk~L~gl~~  195 (365)
T 1lw7_A          171 KTVAILGGESSGKSVLVNKLAAVFN  195 (365)
T ss_dssp             EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            5678999999999999999987654

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=94.10  E-value=0.032  Score=46.53  Aligned_cols=22  Identities=23%  Similarity=0.386  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~  294 (369)
                      ..|+++|+||+||||+.+++..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~   25 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTG   25 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            4689999999999999999986

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=94.06  E-value=0.026  Score=47.96  Aligned_cols=21  Identities=33%  Similarity=0.785  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~  294 (369)
                      -|+++|.||+|||||.+.+..
T Consensus         4 kv~ivG~~gvGKStLl~~l~~   24 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMK   24 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            378999999999999999986

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=94.03  E-value=0.029  Score=45.99  Aligned_cols=22  Identities=27%  Similarity=0.610  Sum_probs=19.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~  294 (369)
                      .-|+++|.+|+||||+..++..
T Consensus         4 ~~i~v~G~~~~GKSsli~~l~~   25 (167)
T 1kao_A            4 YKVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHc
Confidence            3589999999999999999874

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=94.00  E-value=0.028  Score=51.69  Aligned_cols=24  Identities=25%  Similarity=0.515  Sum_probs=20.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      -.++.+.|++||||||+.+.++-.
T Consensus        30 Ge~~~i~G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A           30 GEKVIILGPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEEECCCCCCHHHHHHHHhCC
Confidence            357899999999999999999753

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=93.98  E-value=0.26  Score=45.87  Aligned_cols=89  Identities=17%  Similarity=0.123  Sum_probs=50.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCC-----cE---------EEeCCcc----------h----hHH-HHHHHHHHHHhCC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLN-----YT---------TVNRDTL----------G----SWQ-KCVSVMKAALDSG  323 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~-----~~---------~i~~D~~----------~----~~~-~~~~~~~~~l~~g  323 (369)
                      ..|.++|.||+|||||..+|....-     ..         .++.+..          .    ... .+...+..++..-
T Consensus         8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~a   87 (301)
T 1wf3_A            8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADV   87 (301)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhcC
Confidence            4689999999999999999975410     00         1111111          0    011 2344455555443


Q ss_pred             C--cEEEeCCCCCHHHHHHHHHHHHhc--CCeEEEEEEeCCH
Q psy4598         324 L--SVVVDNTNPDKESRHRYIEAAKQH--GVRCIAVHMNISK  361 (369)
Q Consensus       324 ~--~vIiD~tn~~~~~r~~~~~la~~~--~~~v~~v~l~~~~  361 (369)
                      .  .+|+|.++........+.+.+++.  +.++.++.=.++.
T Consensus        88 d~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl  129 (301)
T 1wf3_A           88 NAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDA  129 (301)
T ss_dssp             SEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGG
T ss_pred             CEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECccc
Confidence            3  567898874333334445556666  7777666554543

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=93.97  E-value=0.024  Score=48.25  Aligned_cols=25  Identities=28%  Similarity=0.490  Sum_probs=21.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      ...-|+++|++||||||+...|...
T Consensus        47 ~~~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           47 YQPSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcC
Confidence            3457899999999999999999864

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=93.96  E-value=0.31  Score=49.37  Aligned_cols=24  Identities=21%  Similarity=0.540  Sum_probs=21.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      -.++.|+|++||||||+.+.|+-.
T Consensus       294 Gei~~i~G~nGsGKSTLl~~l~Gl  317 (538)
T 3ozx_A          294 GEIIGILGPNGIGKTTFARILVGE  317 (538)
T ss_dssp             TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            368899999999999999999864

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=93.95  E-value=0.071  Score=49.75  Aligned_cols=33  Identities=21%  Similarity=0.433  Sum_probs=26.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC--CcEEEeCCc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL--NYTTVNRDT  305 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~--~~~~i~~D~  305 (369)
                      .++++.|++|+||||+++.+.+..  ...+++...
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~   65 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK   65 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence            489999999999999999998764  456777553

>3rfu_A Copper efflux ATPase; alpha helical, CPC, CXXC, ATP-binding, hydrolase, ION transp magnesium, Cu+, membrane, metal-binding; 3.20A {Legionella pneumophila subsp}

Probab=93.92  E-value=0.17  Score=53.33  Aligned_cols=106  Identities=18%  Similarity=0.195  Sum_probs=70.2

Q ss_pred             ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcC
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLN  104 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~  104 (369)
                      .+++++..||+++.--       ...|-  +-|+++++|++|+++|++++++|.-.            ..-...+.+++|
T Consensus       534 ~~vl~va~d~~~~G~i-------~i~D~--i~~~~~~aI~~L~~~Gi~v~mlTGd~------------~~~a~~ia~~lg  592 (736)
T 3rfu_A          534 ASVMFMAVDGKTVALL-------VVEDP--IKSSTPETILELQQSGIEIVMLTGDS------------KRTAEAVAGTLG  592 (736)
T ss_dssp             CEEEEEEETTEEEEEE-------EEECC--BCSSHHHHHHHHHHHTCEEEEECSSC------------HHHHHHHHHHHT
T ss_pred             CeEEEEEECCEEEEEE-------Eeecc--chhhHHHHHHHHHHCCCeEEEECCCC------------HHHHHHHHHHcC
Confidence            4788889999876421       11121  57999999999999999999999832            234566778888


Q ss_pred             CCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc
Q psy4598         105 VPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF  180 (369)
Q Consensus       105 i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f  180 (369)
                      +.-  +++.     -  .|.--..+++.+    .-..+.+.||||..                +|..+-..+++-.
T Consensus       593 i~~--v~a~-----~--~P~~K~~~v~~l----~~~g~~V~~vGDG~----------------ND~paL~~AdvGI  639 (736)
T 3rfu_A          593 IKK--VVAE-----I--MPEDKSRIVSEL----KDKGLIVAMAGDGV----------------NDAPALAKADIGI  639 (736)
T ss_dssp             CCC--EECS-----C--CHHHHHHHHHHH----HHHSCCEEEEECSS----------------TTHHHHHHSSEEE
T ss_pred             CCE--EEEe-----c--CHHHHHHHHHHH----HhcCCEEEEEECCh----------------HhHHHHHhCCEEE
Confidence            731  1111     1  222223333332    22356799999999                8998888887654

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=93.92  E-value=0.031  Score=45.82  Aligned_cols=22  Identities=36%  Similarity=0.659  Sum_probs=19.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~  294 (369)
                      .-|+++|.+|+||||+.+++..
T Consensus         5 ~~i~v~G~~~~GKssl~~~l~~   26 (168)
T 1u8z_A            5 HKVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHh
Confidence            3578999999999999999975

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=93.91  E-value=0.039  Score=52.50  Aligned_cols=25  Identities=20%  Similarity=0.210  Sum_probs=22.0

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhc
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~  294 (369)
                      ....++.|+|+|||||||+.+.+..
T Consensus        53 ~~g~~v~i~G~~GaGKSTLl~~l~g   77 (337)
T 2qm8_A           53 GRAIRVGITGVPGVGKSTTIDALGS   77 (337)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHH
Confidence            3457899999999999999999975

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=93.88  E-value=0.034  Score=48.85  Aligned_cols=25  Identities=20%  Similarity=0.344  Sum_probs=21.7

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      ....|+++|.+|+||||+...+...
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~   61 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDN   61 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence            4567888899999999999999865

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	369
d1yj5a1	195	c.108.1.9 (A:144-338) 5' polynucleotide kinase-3'	4e-58
d1yj5a2	172	c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' p	4e-17
d1ltqa1	149	c.108.1.9 (A:153-301) Polynucleotide kinase, phosp	1e-06
d2fpwa1	161	c.108.1.19 (A:3-163) Histidine biosynthesis bifunc	5e-06
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	0.003

>d1yj5a1 c.108.1.9 (A:144-338) 5' polynucleotide kinase-3' phosphatase, middle domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 195

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: phosphatase domain of polynucleotide kinase
domain: 5' polynucleotide kinase-3' phosphatase, middle domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  185 bits (470), Expect = 4e-58
 Identities = 99/196 (50%), Positives = 129/196 (65%), Gaps = 4/196 (2%)

Query: 5   WDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLK 64
           W+ +   KLLVFT++ V    K+A+FDLDGTLITT+SGKVFP    DW++L+  I   L+
Sbjct: 3   WESLK--KLLVFTASGVKPQGKVAAFDLDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQ 60

Query: 65  QYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPG 124
           +   +GYKLVIFTNQ  IGR K+    F+ K E +++ L VP Q+ VAT     RKPV G
Sbjct: 61  ELAAEGYKLVIFTNQMGIGRGKLPAEVFKGKVEAVLEKLGVPFQVLVATHAGLNRKPVSG 120

Query: 125 MWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAP-KKKKDFACTDHLFAFNLNLAFFTP 183
           MW++L ++ N  + I +  S + GDAAGR ANWAP +KKKDF+C D LFA N+ L F TP
Sbjct: 121 MWDHLQEQANEGIPISVEDSVFVGDAAGRLANWAPGRKKKDFSCADRLFALNVGLPFATP 180

Query: 184 EQIFLNEKAPDFPNLP 199
           E+ FL   A  F  LP
Sbjct: 181 EEFFLKWPAARF-ELP 195

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 76.1 bits (186), Expect = 4e-17
 Identities = 48/97 (49%), Positives = 63/97 (64%)

Query: 273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTN 332
            V++ +G  G+GKS+F+  +L    Y  VNRDTLGSWQ+CVS  +AAL  G  VV+DNTN
Sbjct: 15  EVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQGKRVVIDNTN 74

Query: 333 PDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK 369
           PD  SR RYI+ AK  GV C   +   + E A+HN +
Sbjct: 75  PDVPSRARYIQCAKDAGVPCRCFNFCATIEQARHNNR 111

>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]} Length = 149

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: phosphatase domain of polynucleotide kinase
domain: Polynucleotide kinase, phosphatase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 45.5 bits (107), Expect = 1e-06
 Identities = 20/114 (17%), Positives = 45/114 (39%), Gaps = 1/114 (0%)

Query: 26  KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRK 85
           K   FD+DGTL        + ++  D  ++   +  + K Y   GY++V+ + + +  ++
Sbjct: 8   KAVIFDVDGTLAKMNGRGPYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKE 67

Query: 86  KMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAI 139
              T+ ++   + +     VP+ M    +    RK      E   +       +
Sbjct: 68  D-PTKYYRMTRKWVEDIAGVPLVMQCQREQGDTRKDDVVKEEIFWKHIAPHFDV 120

>d2fpwa1 c.108.1.19 (A:3-163) Histidine biosynthesis bifunctional protein HisB, phosphatase domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: Histidine biosynthesis bifunctional protein HisB, phosphatase domain
species: Escherichia coli [TaxId: 562]

 Score = 44.1 bits (103), Expect = 5e-06
 Identities = 30/146 (20%), Positives = 46/146 (31%), Gaps = 18/146 (12%)

Query: 24  SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIG 83
           S K    D DGTLI+                    +   L +    GYKLV+ TNQ  +G
Sbjct: 1   SQKYLFIDRDGTLISEPPSDFQVDRFDKLA-FEPGVIPQLLKLQKAGYKLVMITNQDGLG 59

Query: 84  RKKMSTRDFQAKAE--------KIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNG 135
            +     DF             + ++   V +   +       RKP   + E    E+  
Sbjct: 60  TQSFPQADFDGPHNLMMQIFTSQGVQFDEVLICPHLPADECDCRKPKVKLVERYLAEQA- 118

Query: 136 DLAIDISQSFYAGDA-----AGRAAN 156
              +D + S+  GD            
Sbjct: 119 ---MDRANSYVIGDRATDIQLAENMG 141

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 35.5 bits (80), Expect = 0.003
 Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 25/121 (20%)

Query: 274 VLIMIGSQGSGKSSFVSTYLKP------LNYTTVNRDTLGSW------------------ 309
           +++ IG  GSGKS++   ++        +N     +  +                     
Sbjct: 4   IILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGM 63

Query: 310 -QKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI 368
                  +    DS   V++ +TN + E R  +   AK++G +      ++         
Sbjct: 64  QFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRN 123

Query: 369 K 369
            
Sbjct: 124 S 124

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	369
d1yj5a1	195	5' polynucleotide kinase-3' phosphatase, middle do	100.0
d2fpwa1	161	Histidine biosynthesis bifunctional protein HisB,	99.96
d2o2xa1	209	Hypothetical protein Mll2559 {Mesorhizobium loti [	99.96
d2gmwa1	182	D,D-heptose 1,7-bisphosphate phosphatase GmhB {Esc	99.94
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	99.85
d2go7a1	204	Hypothetical protein SP2064 {Streptococcus pneumon	99.76
d1te2a_	218	Phosphatase YniC {Escherichia coli [TaxId: 562]}	99.72
d1ltqa1	149	Polynucleotide kinase, phosphatase domain {Bacteri	99.71
d2hdoa1	207	Phosphoglycolate phosphatase {Lactobacillus planta	99.71
d1u7pa_	164	Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mu	99.7
d2hsza1	224	Phosphoglycolate phosphatase Gph {Haemophilus somn	99.69
d2fi1a1	187	Putative hydrolase SP0805 {Streptococcus pneumonia	99.69
d1swva_	257	Phosphonoacetaldehyde hydrolase {Bacillus cereus [	99.67
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	99.66
d1cr6a1	222	Epoxide hydrolase, N-terminal domain {Mouse (Mus m	99.66
d1o08a_	221	beta-Phosphoglucomutase {Lactococcus lactis [TaxId	99.66
d1zrna_	220	L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., s	99.64
d2hcfa1	228	Hypothetical protein CT1708 {Chlorobium tepidum [T	99.63
d2gfha1	247	N-acylneuraminate-9-phosphatase NANP {Mouse (Mus m	99.63
d1zd3a1	225	Epoxide hydrolase, N-terminal domain {Human (Homo	99.62
d1qq5a_	245	L-2-Haloacid dehalogenase, HAD {Xanthobacter autot	99.61
d1x42a1	230	Hypothetical protein PH0459 {Archaeon Pyrococcus h	99.59
d2ah5a1	210	predicted phosphatase SP0104 {Streptococcus pneumo	99.55
d1zs9a1	253	E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}	99.52
d1wvia_	253	Putative phosphatase SMU.1415c {Streptococcus muta	99.51
d1yv9a1	253	Putative hydrolase EF1188 {Enterococcus faecalis [	99.51
d2c4na1	250	NagD {Escherichia coli [TaxId: 562]}	99.5
d1vjra_	261	Hypothetical protein TM1742 {Thermotoga maritima [	99.48
d2b0ca1	197	Putative phosphatase YihX {Escherichia coli [TaxId	99.46
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	99.42
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	99.4
d2fdra1	222	Hypothetical protein Atu0790 {Agrobacterium tumefa	99.39
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	99.39
d2feaa1	226	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	99.38
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	99.35
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	99.32
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	99.23
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	99.18
d1nnla_	217	Phosphoserine phosphatase {Human (Homo sapiens) [T	99.09
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	99.04
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	99.04
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	99.02
d2g80a1	225	Protein UTR4 {Baker's yeast (Saccharomyces cerevis	99.02
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	99.0
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	98.99
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	98.97
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	98.95
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	98.94
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.94
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	98.89
d1j97a_	210	Phosphoserine phosphatase {Archaeon Methanococcus	98.89
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	98.87
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	98.87
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	98.86
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	98.83
d1wr8a_	230	Phosphoglycolate phosphatase, PGPase {Pyrococcus h	98.82
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	98.81
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	98.81
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	98.81
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	98.79
d1qyia_	380	Hypothetical protein MW1667 (SA1546) {Staphylococc	98.66
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	98.66
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	98.61
d1l6ra_	225	Phosphoglycolate phosphatase, PGPase {Archaeon The	98.49
d1xpja_	124	Hypothetical protein VC0232 {Vibrio cholerae [TaxI	98.43
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	98.43
d2b82a1	209	Class B acid phosphatase, AphA {Escherichia coli [	98.4
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	98.3
d1nrwa_	285	Hypothetical protein YwpJ {Bacillus subtilis [TaxI	98.2
d2obba1	122	Hypothetical protein BT0820 {Bacteroides thetaiota	98.16
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	98.15
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	98.15
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	98.14
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	98.08
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	98.08
d2b30a1	283	PFL1270w orthologue {Plasmodium vivax [TaxId: 5855	98.08
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	98.05
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	98.02
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.96
d1rlma_	269	Sugar phosphatase SupH (YbiV) {Escherichia coli [T	97.95
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	97.95
d1wzca1	243	Putative mannosyl-3-phosphoglycerate phosphatase M	97.94
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.93
d1vmaa2	213	GTPase domain of the signal recognition particle r	97.89
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.88
d1k1ea_	177	Probable phosphatase YrbI {Haemophilus influenzae,	97.86
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.86
d1rkua_	206	Homoserine kinase ThrH {Pseudomonas aeruginosa [Ta	97.84
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.83
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.82
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.81
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.8
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.77
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.71
d1okkd2	207	GTPase domain of the signal recognition particle r	97.7
d1rkqa_	271	Hypothetical protein YidA {Escherichia coli [TaxId	97.64
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	97.61
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	97.59
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.55
d1s2oa1	244	Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc	97.55
d2rbka1	260	Sugar-phosphate phosphatase BT4131 {Bacteroides th	97.54
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.53
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	97.51
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	97.45
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	97.43
d1xvia_	232	Putative mannosyl-3-phosphoglycerate phosphatase M	97.42
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	97.39
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.39
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.37
d2amya1	243	Phosphomannomutase 2 {Human (Homo sapiens) [TaxId:	97.37
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.37
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	97.36
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	97.35
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	97.22
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.2
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.19
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	97.15
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.15
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.15
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	97.09
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	97.09
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.05
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.02
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.99
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	96.97
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.93
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.91
d2b8ea1	135	Cation-transporting ATPase {Archaeon Archaeoglobus	96.89
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.8
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.79
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.78
d2fuea1	244	Phosphomannomutase 1 {Human (Homo sapiens) [TaxId:	96.78
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.74
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.72
d2awna2	232	Maltose transport protein MalK, N-terminal domain	96.71
d1u02a_	229	Trehalose-6-phosphate phosphatase related protein	96.7
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	96.67
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	96.66
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.63
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.6
d1nf2a_	267	Hypothetical protein TM0651 {Thermotoga maritima [	96.6
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	96.58
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.55
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	96.55
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	96.54
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.52
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.51
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	96.5
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.45
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	96.31
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.3
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.3
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	96.3
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	96.29
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.26
d2axpa1	164	Hypothetical protein YorR {Bacillus subtilis [TaxI	96.25
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.24
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.21
d1ta0a_	181	Carboxy-terminal domain RNA polymerase II polypept	96.2
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.18
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	96.17
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.17
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.1
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.06
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	96.04
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.01
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.0
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.96
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.93
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	95.85
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.82
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	95.78
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	95.7
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	95.68
d2bdea1	458	Cytosolic IMP-GMP specific 5'-nucleotidase {Legion	95.63
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	95.57
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.48
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.41
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.37
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	95.35
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.34
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	95.33
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	95.32
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	95.28
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	95.18
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.15
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.14
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	95.12
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	95.03
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	95.0
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.0
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	94.98
d2bdua1	291	Cytosolic 5'-nucleotidase III {Mouse (Mus musculus	94.9
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.87
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	94.86
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	94.78
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	94.78
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	94.74
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	94.71
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	94.66
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	94.6
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	94.55
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	94.55
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.54
d1nrjb_	209	Signal recognition particle receptor beta-subunit	94.49
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.45
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	94.45
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.41
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	94.36
d1wpga2	168	Calcium ATPase, catalytic domain P {Rabbit (Orycto	94.35
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	94.32
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	94.31
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	94.29
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	94.22
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	94.16
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	94.15
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	94.12
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	94.11
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	94.06
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	94.05
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	93.97
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	93.93
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	93.92
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	93.91
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	93.85
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.84
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	93.8
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	93.73
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	93.72
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	93.71
d2fh5b1	207	Signal recognition particle receptor beta-subunit	93.71
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	93.7
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	93.66
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	93.64
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	93.64
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	93.62
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	93.51
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	93.5
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	93.5
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	93.49
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	93.48
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	93.44
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	93.37
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	93.37
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	93.31
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	93.3
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	93.26
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	93.24
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	93.22
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	93.2
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	93.19
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	93.18
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	93.16
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	93.1
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	93.04
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	93.03
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	93.02
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	93.0
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	93.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	92.98
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	92.9
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	92.89
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	92.88
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	92.87
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	92.82
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	92.82
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	92.78
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	92.78
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	92.74
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	92.73
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	92.69
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	92.66
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	92.63
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	92.58
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	92.48
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	92.48
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	92.31
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	92.3
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	92.28
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	92.27
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	92.26
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	92.25
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	92.25
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	92.24
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	92.23
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	92.22
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	92.21
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	92.19
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	92.15
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	92.14
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	92.12
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	92.06
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	91.79
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	91.74
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	91.65
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	91.64
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	91.64
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	91.63
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	91.62
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	91.55
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	91.49
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	91.39
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	91.35
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	91.32
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	91.31
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	91.29
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	91.26
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	91.22
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	91.18
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	91.07
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	91.0
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	90.98
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	90.68
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	90.53
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	90.32
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	90.24
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	89.86
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	89.7
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	89.7
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	89.53
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	89.47
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	89.46
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	89.26
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	89.23
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	89.02
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	88.9
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	88.74
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	88.74
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	88.61
d1kjwa2	199	Guanylate kinase-like domain of Psd-95 {Rat (Rattu	88.58
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	88.53
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	88.4
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	88.39
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	88.21
d1q92a_	195	5'(3')-deoxyribonucleotidase (dNT-2) {Human (Homo	88.1
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	87.85
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	87.75
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	87.54
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	87.5
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	87.39
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	87.18
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	86.75
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	86.68
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	86.58
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	86.56
d1j8yf2	211	GTPase domain of the signal sequence recognition p	86.41
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	86.32
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	86.24
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	86.07
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	85.94
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	85.87
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	85.81
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	85.64
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	85.61
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	85.54
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	85.48
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	85.27
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	84.72
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	84.64
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	84.62
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	84.57
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	84.51
d1vmaa2	213	GTPase domain of the signal recognition particle r	84.31
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	84.09
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	84.05
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	83.79
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	82.96
d1xpua3	289	Transcription termination factor Rho, ATPase domai	82.45
d2qy9a2	211	GTPase domain of the signal recognition particle r	82.08
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	82.07
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	81.92
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	81.72
d1nrjb_	209	Signal recognition particle receptor beta-subunit	81.64
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	81.45
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	81.17
d1ls1a2	207	GTPase domain of the signal sequence recognition p	80.92
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	80.84
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	80.56
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	80.1
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	80.04

>d1yj5a1 c.108.1.9 (A:144-338) 5' polynucleotide kinase-3' phosphatase, middle domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: phosphatase domain of polynucleotide kinase
domain: 5' polynucleotide kinase-3' phosphatase, middle domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.6e-52  Score=372.38  Aligned_cols=193  Identities=51%  Similarity=0.920  Sum_probs=183.2

Q ss_pred             CcEEecCceEEEEecCCCCCCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcC
Q psy4598           4 SWDIVDNGKLLVFTSNDVCNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIG   83 (369)
Q Consensus         4 ~W~~~~~~~~~~~~~~~~~~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~   83 (369)
                      .|+.++  ++++|..+.+.++.|+++|||||||+.+.+|..|+.++.||++++|+|+++|+.|+++||.|+|||||+||+
T Consensus         2 ~w~~~~--~~l~~~~~~~~~~~Kia~fDrDGtLik~~~~~~~~~~~~d~~~l~~~v~~~i~~L~~~gy~iiIvTNQ~gI~   79 (195)
T d1yj5a1           2 GWESLK--KLLVFTASGVKPQGKVAAFDLDGTLITTRSGKVFPTSPSDWRILYPEIPKKLQELAAEGYKLVIFTNQMGIG   79 (195)
T ss_dssp             CEEEET--TEEEEECTTCCCCSCEEEECSBTTTEECSSSCSSCSSTTCCEESCTTHHHHHHHHHHHTCEEEEEEECHHHH
T ss_pred             CceecC--CEEEEcCCCCCCcCcEEEEECCCceEeeCCCCcCCCChhhceeccCCHHHHHHHHHhCCcEEEEecCcchhc
Confidence            599886  689999999999999999999999999999999999999999889999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCC-CCC
Q psy4598          84 RKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAP-KKK  162 (369)
Q Consensus        84 ~~~~~~~~~~~~i~~~l~~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~-~~~  162 (369)
                      +|+++.+++.++++.+++.+++++.+++|++++.||||+||||+.+++++|.+..+|+++|+||||++||+..|++ +++
T Consensus        80 rg~~s~~~~~~~~~~i~~~l~~~~~i~~~~~~~~~RKP~~GM~~~~~~~~n~~~~id~~~S~~IGD~~gr~~~~~~~~~~  159 (195)
T d1yj5a1          80 RGKLPAEVFKGKVEAVLEKLGVPFQVLVATHAGLNRKPVSGMWDHLQEQANEGIPISVEDSVFVGDAAGRLANWAPGRKK  159 (195)
T ss_dssp             HTSSCHHHHHHHHHHHHHHHTSCCEEEEECSSSSSSTTSTHHHHHHHHTSSSSCCCCGGGCEEECSCCCBCTTSBTTBCS
T ss_pred             cCCcCHHHHHHHHHHHHHHcCCCccEEEecCccccCCCccHHHHHHHHHhcccccCCcCceEEEeCccCccccccccccc
Confidence            9999999999999999999999999999999999999999999999999987778999999999999999999887 558


Q ss_pred             CCCCcccHHHHHhCCCCccCchhhccCCCCCCCCCCC
Q psy4598         163 KDFACTDHLFAFNLNLAFFTPEQIFLNEKAPDFPNLP  199 (369)
Q Consensus       163 ~d~s~~D~~~A~n~Gi~f~~pe~~f~~~~~~~~~~~~  199 (369)
                      ||||++|++||.|+||+|++|||||+++++.++ .+|
T Consensus       160 ~D~S~sD~~fA~N~gikF~~pee~Fl~~~~~~~-~~~  195 (195)
T d1yj5a1         160 KDFSCADRLFALNVGLPFATPEEFFLKWPAARF-ELP  195 (195)
T ss_dssp             CCSCCHHHHHHHHHTCCEECHHHHTTCCCCCCB-CCC
T ss_pred             cCcchhHHHHHHHCCCcccCHHHHhcCCCcccC-CCC
Confidence            999999999999999999999999999987766 444

>d2fpwa1 c.108.1.19 (A:3-163) Histidine biosynthesis bifunctional protein HisB, phosphatase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: Histidine biosynthesis bifunctional protein HisB, phosphatase domain
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1.6e-30  Score=224.18  Aligned_cols=140  Identities=27%  Similarity=0.342  Sum_probs=117.4

Q ss_pred             CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHH---HHHHHH
Q psy4598          24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQA---KAEKII  100 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~---~i~~~l  100 (369)
                      +.|++|||+||||+.+.....|....+++. ++|||.++|+.|+++||+++|+|||+|+++|.++..++..   ++...+
T Consensus         1 ~~K~i~~D~DGtL~~~~~~~~~~~~~~~~~-~~pgv~e~L~~L~~~g~~l~i~TNq~~ia~~~~~~~~~~~~~~~l~~~l   79 (161)
T d2fpwa1           1 SQKYLFIDRDGTLISEPPSDFQVDRFDKLA-FEPGVIPQLLKLQKAGYKLVMITNQDGLGTQSFPQADFDGPHNLMMQIF   79 (161)
T ss_dssp             CCEEEEECCBTTTBCCC--CCCCCSGGGCC-BCTTHHHHHHHHHHTTEEEEEEEECTTTTSTTSCHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEeCCCCeEeeCCCCCccCCHHHce-ECccHHHHHHHHHHcCCceeeecccccchhHHHHHHHhhhhhhhhhhhc
Confidence            469999999999998765444566667776 7999999999999999999999999999999999888775   566778


Q ss_pred             HHcCCCeE-EEEecC----CCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHh
Q psy4598         101 KSLNVPVQ-MFVATQ----YDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFN  175 (369)
Q Consensus       101 ~~l~i~~~-~~~~~~----~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n  175 (369)
                      ...|+.++ +++|++    ++.+|||+|+|++++++++    ++++++|+||||+.                +|+++|.|
T Consensus        80 ~~~~~~~~~i~~~~~~~~~~~~~~KP~p~~~~~~~~~~----~id~~~~~~IGD~~----------------~Di~aA~~  139 (161)
T d2fpwa1          80 TSQGVQFDEVLICPHLPADECDCRKPKVKLVERYLAEQ----AMDRANSYVIGDRA----------------TDIQLAEN  139 (161)
T ss_dssp             HHTTCCEEEEEEECCCGGGCCSSSTTSSGGGGGGC--------CCGGGCEEEESSH----------------HHHHHHHH
T ss_pred             cccccccceeeeccccccccccccccccHHHHHHHHhc----CCChhcEEEECCCH----------------HHHHHHHH
Confidence            88898764 777764    6788999999999999996    79999999999998                89999999


Q ss_pred             CCCCccCch
Q psy4598         176 LNLAFFTPE  184 (369)
Q Consensus       176 ~Gi~f~~pe  184 (369)
                      +||+++...
T Consensus       140 aG~~~i~i~  148 (161)
T d2fpwa1         140 MGINGLRYD  148 (161)
T ss_dssp             HTSEEEECB
T ss_pred             cCCeEEEEC
Confidence            999997543

>d2o2xa1 c.108.1.19 (A:8-216) Hypothetical protein Mll2559 {Mesorhizobium loti [TaxId: 381]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: Hypothetical protein Mll2559
species: Mesorhizobium loti [TaxId: 381]

Probab=99.96  E-value=4.3e-29  Score=224.07  Aligned_cols=137  Identities=23%  Similarity=0.272  Sum_probs=119.1

Q ss_pred             CCCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHH---HHHH
Q psy4598          22 CNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQA---KAEK   98 (369)
Q Consensus        22 ~~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~---~i~~   98 (369)
                      .++.+++|||+||||+.+.   .|..++.+|+ ++|||.++|++|+++||+++|+|||+|+++|.++.+++..   ++..
T Consensus        20 p~~~~Aif~DrDGtl~~~~---~y~~~~~~~~-l~pgv~e~L~~L~~~G~~l~IvTNQ~gi~~g~~~~~~~~~~~~~~~~   95 (209)
T d2o2xa1          20 PPHLPALFLDRDGTINVDT---DYPSDPAEIV-LRPQMLPAIATANRAGIPVVVVTNQSGIARGYFGWSAFAAVNGRVLE   95 (209)
T ss_dssp             CSSCCCEEECSBTTTBCCC---SCTTCGGGCC-BCGGGHHHHHHHHHHTCCEEEEEECHHHHTTSCCHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEeCCCCeECCC---CCCCCHHHeE-ecccHHHHHHHHHhhCCeEEEecccccchhhhhhhhhhhhhhhHHHH
Confidence            3456889999999999864   5899999998 6999999999999999999999999999999999877654   6667


Q ss_pred             HHHHcCCCeE-EEEecC-----------CCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCC
Q psy4598          99 IIKSLNVPVQ-MFVATQ-----------YDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFA  166 (369)
Q Consensus        99 ~l~~l~i~~~-~~~~~~-----------~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s  166 (369)
                      .+...|+.++ +++++.           ++.||||+|+|+..+++++    ++++++|+||||+.               
T Consensus        96 ~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~rKP~p~ml~~a~~~~----~i~~~~~~~VGD~~---------------  156 (209)
T d2o2xa1          96 LLREEGVFVDMVLACAYHEAGVGPLAIPDHPMRKPNPGMLVEAGKRL----ALDLQRSLIVGDKL---------------  156 (209)
T ss_dssp             HHHHTTCCCSEEEEECCCTTCCSTTCCSSCTTSTTSCHHHHHHHHHH----TCCGGGCEEEESSH---------------
T ss_pred             HhhhcccccceEEEecccccccccccccccccccccchhhhHhHHHh----CCCccceEEeCCCH---------------
Confidence            7888888765 555542           4678999999999999997    69999999999998               


Q ss_pred             cccHHHHHhCCCCccC
Q psy4598         167 CTDHLFAFNLNLAFFT  182 (369)
Q Consensus       167 ~~D~~~A~n~Gi~f~~  182 (369)
                       +|+++|+|+||+++.
T Consensus       157 -~Di~aA~~AGi~~i~  171 (209)
T d2o2xa1         157 -ADMQAGKRAGLAQGW  171 (209)
T ss_dssp             -HHHHHHHHTTCSEEE
T ss_pred             -HHHHHHHHCCCcEEE
Confidence             899999999999753

>d2gmwa1 c.108.1.19 (A:24-205) D,D-heptose 1,7-bisphosphate phosphatase GmhB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: D,D-heptose 1,7-bisphosphate phosphatase GmhB
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=3.7e-27  Score=206.54  Aligned_cols=132  Identities=22%  Similarity=0.358  Sum_probs=115.3

Q ss_pred             ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHH---HHHHHHH
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQA---KAEKIIK  101 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~---~i~~~l~  101 (369)
                      .+++||||||||+...   .|...+++|+ ++|||.++|+.|+++||+++|+|||++++++..+......   ++...+.
T Consensus         2 ~~Av~~DrDGtl~~~~---~y~~~~~~~~-~~~gv~e~l~~L~~~g~~~~ivTNq~~i~~~~~~~~~~~~~~~~~~~~~~   77 (182)
T d2gmwa1           2 VPAIFLDRDGTINVDH---GYVHEIDNFE-FIDGVIDAMRELKKMGFALVVVTNQSGIARGKFTEAQFETLTEWMDWSLA   77 (182)
T ss_dssp             BCEEEECSBTTTBCCC---SSCCSGGGCC-BCTTHHHHHHHHHHTTCEEEEEEECTHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCccCCC---CCCCCHHHee-ECCCHHHHHHHHhhcCchhhhhhccchhhhhhhHHHhhhhhhhhhhhhhh
Confidence            5799999999999754   5888999998 6999999999999999999999999999999988876665   4555566


Q ss_pred             HcCCCe-EEEEecC-----------CCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCccc
Q psy4598         102 SLNVPV-QMFVATQ-----------YDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTD  169 (369)
Q Consensus       102 ~l~i~~-~~~~~~~-----------~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D  169 (369)
                      ..++.+ .+++|++           .+.+|||+|+|+..+++++    ++++++|+||||+.                +|
T Consensus        78 ~~~~~~~~~~~cp~~p~~~~~~~~~~~~~rKP~p~m~~~~~~~~----~i~~~~s~mVGDs~----------------~D  137 (182)
T d2gmwa1          78 DRDVDLDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSARDYL----HIDMAASYMVGDKL----------------ED  137 (182)
T ss_dssp             HTTCCCSEEEEECCBTTCSSGGGBSCCSSSTTSCHHHHHHHHHH----TBCGGGCEEEESSH----------------HH
T ss_pred             hhcccccceeecccccccccccccccccccCCccccccchhhhc----ccccccccccCCCH----------------HH
Confidence            677765 4778874           4778999999999999997    69999999999998                89


Q ss_pred             HHHHHhCCCCc
Q psy4598         170 HLFAFNLNLAF  180 (369)
Q Consensus       170 ~~~A~n~Gi~f  180 (369)
                      +++|+|+||..
T Consensus       138 i~aA~~Ag~~~  148 (182)
T d2gmwa1         138 MQAAVAANVGT  148 (182)
T ss_dssp             HHHHHHTTCSE
T ss_pred             HHHHHHhCCCc
Confidence            99999999975

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.85  E-value=1.2e-21  Score=169.73  Aligned_cols=102  Identities=47%  Similarity=0.762  Sum_probs=97.7

Q ss_pred             cccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchhHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHh
Q psy4598         268 KAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQ  347 (369)
Q Consensus       268 ~~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~~~~~~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~  347 (369)
                      ..+.|.+|+|+|+|||||||+|+++++..++.+|+.|.++.+..+.+.++.+++.|.+||+|+||.+...|..++++|++
T Consensus        10 ~~~~p~liil~G~pGsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~~~~~l~~g~~vIiD~t~~~~~~R~~~~~~a~~   89 (172)
T d1yj5a2          10 LSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQGKRVVIDNTNPDVPSRARYIQCAKD   89 (172)
T ss_dssp             SCSSCCEEEEECCTTSSHHHHHHHHTGGGTCEEEEHHHHCSHHHHHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHhcCCEEEchHHHHHHHHHHHHHHHHHHCCCCceeeCcCCCHHHHHHHHHHHHh
Confidence            34668999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCeEEEEEEeCCHHHHHHHcC
Q psy4598         348 HGVRCIAVHMNISKEHAKHNIK  369 (369)
Q Consensus       348 ~~~~v~~v~l~~~~e~~~~Rn~  369 (369)
                      +|+++.++++++|.++|++||+
T Consensus        90 ~~~~~~~v~l~~~~e~~~~Rn~  111 (172)
T d1yj5a2          90 AGVPCRCFNFCATIEQARHNNR  111 (172)
T ss_dssp             HTCCEEEEEECCCHHHHHHHHH
T ss_pred             cCCCEEEEEeCCCHHHHHHHHH
Confidence            9999999999999999999973

>d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein SP2064
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.76  E-value=3.1e-19  Score=156.65  Aligned_cols=95  Identities=27%  Similarity=0.399  Sum_probs=83.5

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|||.+.|+.|+++|++++|+||..         .    .+..+++.+|+  +|+.++++++...+||+|.||+.++++
T Consensus        83 ~~pgv~~~L~~L~~~g~~~~v~Sn~~---------~----~~~~~l~~~gl~~~f~~i~~s~~~~~~Kp~~~~~~~~~~~  149 (204)
T d2go7a1          83 LMPGAREVLAWADESGIQQFIYTHKG---------N----NAFTILKDLGVESYFTEILTSQSGFVRKPSPEAATYLLDK  149 (204)
T ss_dssp             ECTTHHHHHHHHHHTTCEEEEECSSC---------T----HHHHHHHHHTCGGGEEEEECGGGCCCCTTSSHHHHHHHHH
T ss_pred             ccchHHhhhhcccccccchhhhcccc---------h----hhhhhhhhcccccccccccccccccccchhHHHHHHHHHH
Confidence            58999999999999999999999942         1    12345777788  489899998899999999999999999


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    +++|++|+||||+.                +|+++|+++||+++.
T Consensus       150 ~----~~~p~~~l~VgD~~----------------~Di~~A~~~G~~~i~  179 (204)
T d2go7a1         150 Y----QLNSDNTYYIGDRT----------------LDVEFAQNSGIQSIN  179 (204)
T ss_dssp             H----TCCGGGEEEEESSH----------------HHHHHHHHHTCEEEE
T ss_pred             h----CCCCceEEEEeCCH----------------HHHHHHHHcCCeEEE
Confidence            6    79999999999998                899999999999864

>d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphatase YniC
species: Escherichia coli [TaxId: 562]

Probab=99.72  E-value=2.3e-18  Score=152.31  Aligned_cols=96  Identities=10%  Similarity=0.172  Sum_probs=86.0

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++||+.+.|+.|+++||+++|+||.+            ...+..+++.+|+.  |+.+++.++...+||+|.+|+.++++
T Consensus        89 ~~pg~~~~l~~L~~~g~~~~i~T~~~------------~~~~~~~l~~~~l~~~F~~i~~~~~~~~~Kp~~~~~~~~~~~  156 (218)
T d1te2a_          89 LLPGVREAVALCKEQGLLVGLASASP------------LHMLEKVLTMFDLRDSFDALASAEKLPYSKPHPQVYLDCAAK  156 (218)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEEESSC------------HHHHHHHHHHTTCGGGCSEEEECTTSSCCTTSTHHHHHHHHH
T ss_pred             ccchHHHHHHHhhhcccccccccccc------------ccccccccccccccccccccccccccccchhhHHHHHHHHHH
Confidence            47999999999999999999999932            34467788899994  88888888889999999999999999


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    ++++++++||||+.                .|+.+|+++|++++.
T Consensus       157 l----~~~~~~~l~igD~~----------------~di~aA~~~G~~~i~  186 (218)
T d1te2a_         157 L----GVDPLTCVALEDSV----------------NGMIASKAARMRSIV  186 (218)
T ss_dssp             H----TSCGGGEEEEESSH----------------HHHHHHHHTTCEEEE
T ss_pred             c----CCCchhcEEEeeCH----------------HHHHHHHHcCCEEEE
Confidence            6    79999999999998                899999999999864

>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: phosphatase domain of polynucleotide kinase
domain: Polynucleotide kinase, phosphatase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.71  E-value=4.2e-17  Score=136.21  Aligned_cols=140  Identities=15%  Similarity=0.173  Sum_probs=96.5

Q ss_pred             CCCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHH
Q psy4598          22 CNSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIK  101 (369)
Q Consensus        22 ~~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~  101 (369)
                      ..+.|+++||+||||+.+.+...|.-.....-.++|++.+.|+.|+++||+|+|+|||++..+.. +.+.+.........
T Consensus         4 ~~kpk~vifDiDgTL~~~~~~~~~~~~~~~~~~~~p~v~~~l~~l~~~G~~Iii~T~R~~~~~~~-t~~~l~~~~~~~~~   82 (149)
T d1ltqa1           4 PGKPKAVIFDVDGTLAKMNGRGPYDLEKCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKED-PTKYYRMTRKWVED   82 (149)
T ss_dssp             TTSCEEEEEETBTTTBCCSSCCTTCGGGGGGCCBCHHHHHHHHHHHHTTCEEEEEECSCCCCSSS-TTHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEcCCCcEeCCCCCcCCccccccCccCHHHHHHHHHHHhccCeEEEEecCcHHHHHH-HHHHHHHHhhhhhh
Confidence            35679999999999997755433322222223469999999999999999999999999888765 34444443333344


Q ss_pred             HcCCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCc-cEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc
Q psy4598         102 SLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQ-SFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF  180 (369)
Q Consensus       102 ~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~-s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f  180 (369)
                      ..+.++..+.......+|++.. +....+.+.    ..+..+ ++||||+.                +|+++|+++||++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~d~~-~k~~~l~~~----~~~~~~i~~~igD~~----------------~dv~a~~~~Gi~~  141 (149)
T d1ltqa1          83 IAGVPLVMQCQREQGDTRKDDV-VKEEIFWKH----IAPHFDVKLAIDDRT----------------QVVEMWRRIGVEC  141 (149)
T ss_dssp             TTCCCCSEEEECCTTCCSCHHH-HHHHHHHHH----TTTTCEEEEEEECCH----------------HHHHHHHHTTCCE
T ss_pred             cCCCcEEEeecccccccCCchH-HHHHHHHHh----ccCCCceEEEEcCCH----------------HHHHHHHHCCCcE
Confidence            4566666666655565665544 444444432    234444 56789999                8999999999998


Q ss_pred             cCc
Q psy4598         181 FTP  183 (369)
Q Consensus       181 ~~p  183 (369)
                      +..
T Consensus       142 ~~V  144 (149)
T d1ltqa1         142 WQV  144 (149)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            643

>d2hdoa1 c.108.1.6 (A:1-207) Phosphoglycolate phosphatase {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase
species: Lactobacillus plantarum [TaxId: 1590]

Probab=99.71  E-value=1.8e-18  Score=152.16  Aligned_cols=96  Identities=21%  Similarity=0.260  Sum_probs=84.0

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++||+.+.|+.|+ ++++++|+||..            ...+..+++.+|+  .|+.++++++...+||+|.+++.++++
T Consensus        83 ~~~g~~~~L~~l~-~~~~~~ivT~~~------------~~~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~p~~~~~~~~~  149 (207)
T d2hdoa1          83 LYPGITSLFEQLP-SELRLGIVTSQR------------RNELESGMRSYPFMMRMAVTISADDTPKRKPDPLPLLTALEK  149 (207)
T ss_dssp             ECTTHHHHHHHSC-TTSEEEEECSSC------------HHHHHHHHTTSGGGGGEEEEECGGGSSCCTTSSHHHHHHHHH
T ss_pred             cccchhhhhhhhc-cccccccccccc------------ccccccccccccccccccccccccccccchhhhhhhcccccc
Confidence            6899999999997 579999999932            3456677888877  589899998889999999999999999


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      +    +++|++++||||+.                +|+++|+++||+++..
T Consensus       150 ~----~~~~~~~l~VgDs~----------------~Di~~a~~aG~~~i~v  180 (207)
T d2hdoa1         150 V----NVAPQNALFIGDSV----------------SDEQTAQAANVDFGLA  180 (207)
T ss_dssp             T----TCCGGGEEEEESSH----------------HHHHHHHHHTCEEEEE
T ss_pred             e----eeeccceeEecCCH----------------HHHHHHHHcCCeEEEE
Confidence            6    79999999999998                8999999999998754

>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Magnesium-dependent phosphatase-1, Mdp1
domain: Magnesium-dependent phosphatase-1, Mdp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=1.1e-17  Score=142.97  Aligned_cols=122  Identities=16%  Similarity=0.165  Sum_probs=90.8

Q ss_pred             ceEEEEecCCceeecCCCCC-------------CCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHH
Q psy4598          25 AKIASFDLDGTLITTKSGKV-------------FPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRD   91 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~-------------~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~   91 (369)
                      .|+++|||||||+.+.-+..             ....... ..+||||.+.|+.|+++||+++|+||++.        ..
T Consensus         5 pK~viFDlDGTL~d~~~~~~~~~~~~~~~~~~~~d~~~~~-~~l~pgv~e~L~~L~~~G~~~~v~S~~~~--------~~   75 (164)
T d1u7pa_           5 PKLAVFDLDYTLWPFWVDTHVDPPFHKSSDGTVRDRRGQN-IQLYPEVPEVLGRLQSLGVPVAAASRTSE--------IQ   75 (164)
T ss_dssp             CSEEEECCBTTTBSSCTTTTCCSCEEECTTSCEEETTCCE-ECCCTTHHHHHHHHHHTTCCEEEEECCSC--------HH
T ss_pred             CCEEEEcCCCcccCCccccccCccHhHHhcchHhhhhccc-cccchHHHHHHHHHHHCCCcEEEEecccc--------ch
Confidence            48999999999986532111             0001111 23799999999999999999999998531        12


Q ss_pred             HHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCccc
Q psy4598          92 FQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTD  169 (369)
Q Consensus        92 ~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D  169 (369)
                         ....+++.+++.  +....     .++||+|.++..+++++    ++++++++||||+.                .|
T Consensus        76 ---~~~~~l~~~~~~~~~~~~~-----~~~kp~~~~~~~~~~~~----~~~~~~~l~igD~~----------------~d  127 (164)
T d1u7pa_          76 ---GANQLLELFDLGKYFIQRE-----IYPGSKVTHFERLHHKT----GVPFSQMVFFDDEN----------------RN  127 (164)
T ss_dssp             ---HHHHHHHHTTCGGGCSEEE-----ESSSCHHHHHHHHHHHH----CCCGGGEEEEESCH----------------HH
T ss_pred             ---hhccchhcccccccceeee-----cccCCChHHHHHHHHHh----CCChHHEEEEcCCH----------------HH
Confidence               223446777763  33222     25799999999999996    79999999999998                89


Q ss_pred             HHHHHhCCCCccCc
Q psy4598         170 HLFAFNLNLAFFTP  183 (369)
Q Consensus       170 ~~~A~n~Gi~f~~p  183 (369)
                      +++|+++||.++..
T Consensus       128 i~aA~~aG~~~i~v  141 (164)
T d1u7pa_         128 IIDVGRLGVTCIHI  141 (164)
T ss_dssp             HHHHHTTTCEEEEC
T ss_pred             HHHHHHcCCEEEEE
Confidence            99999999999643

>d2hsza1 c.108.1.6 (A:1-224) Phosphoglycolate phosphatase Gph {Haemophilus somnus [TaxId: 731]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase Gph
species: Haemophilus somnus [TaxId: 731]

Probab=99.69  E-value=6.7e-18  Score=149.11  Aligned_cols=97  Identities=22%  Similarity=0.340  Sum_probs=86.6

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|++.|++++|+||++            ...+..+++.+|+.  |+.++++.....+||+|.++..++++
T Consensus        96 l~~~~~~~L~~L~~~g~~~~i~tn~~------------~~~~~~~l~~~gl~~~f~~~~~~~~~~~~kp~p~~~~~~~~~  163 (224)
T d2hsza1          96 LYPNVKETLEALKAQGYILAVVTNKP------------TKHVQPILTAFGIDHLFSEMLGGQSLPEIKPHPAPFYYLCGK  163 (224)
T ss_dssp             ECTTHHHHHHHHHHTTCEEEEECSSC------------HHHHHHHHHHTTCGGGCSEEECTTTSSSCTTSSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhccCCccccccccc------------HHHHHHHHHhcCchhhccccccccccccccccchhhHHHHHH
Confidence            68999999999999999999999954            23466778999984  88889999999999999999999998


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      +    ++++++++||||+.                .|+++|+++|++++..
T Consensus       164 ~----~~~~~~~~~igD~~----------------~Di~~A~~aG~~~i~v  194 (224)
T d2hsza1         164 F----GLYPKQILFVGDSQ----------------NDIFAAHSAGCAVVGL  194 (224)
T ss_dssp             H----TCCGGGEEEEESSH----------------HHHHHHHHHTCEEEEE
T ss_pred             h----hhhhhccchhcCcH----------------HHHHHHHHcCCeEEEE
Confidence            6    78999999999998                8999999999998654

>d2fi1a1 c.108.1.3 (A:4-190) Putative hydrolase SP0805 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Putative hydrolase SP0805
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.69  E-value=1.1e-17  Score=145.32  Aligned_cols=93  Identities=19%  Similarity=0.279  Sum_probs=79.3

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++||+.+.|++|+++|++++|+||.+.             .+..+++.+++  .|+.++++++...+||+|.+|+.++++
T Consensus        80 ~~~gv~~~l~~l~~~g~~~~i~Sn~~~-------------~~~~~l~~~~l~~~fd~i~~~~~~~~~KP~p~~~~~~~~~  146 (187)
T d2fi1a1          80 LFEGVSDLLEDISNQGGRHFLVSHRND-------------QVLEILEKTSIAAYFTEVVTSSSGFKRKPNPESMLYLREK  146 (187)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEECSSCT-------------HHHHHHHHTTCGGGEEEEECGGGCCCCTTSCHHHHHHHHH
T ss_pred             ccchhHHHHHHHHhhhccccccccCcc-------------chhhhhhhhccccccccccccccccccCCCHHHHHHHHHH
Confidence            679999999999999999999999431             12335677777  489999998888999999999999998


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    +  +++++||||+.                .|+++|+++||+++.
T Consensus       147 ~----~--~~~~l~vgDs~----------------~Di~aA~~aG~~~i~  174 (187)
T d2fi1a1         147 Y----Q--ISSGLVIGDRP----------------IDIEAGQAAGLDTHL  174 (187)
T ss_dssp             T----T--CSSEEEEESSH----------------HHHHHHHHTTCEEEE
T ss_pred             c----C--CCCeEEEeCCH----------------HHHHHHHHcCCEEEE
Confidence            5    3  46799999998                899999999999864

>d1swva_ c.108.1.3 (A:) Phosphonoacetaldehyde hydrolase {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Phosphonoacetaldehyde hydrolase
species: Bacillus cereus [TaxId: 1396]

Probab=99.67  E-value=2.8e-17  Score=149.16  Aligned_cols=96  Identities=15%  Similarity=0.137  Sum_probs=78.8

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC---CeEEEEecCCCCCCCCchhHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV---PVQMFVATQYDRYRKPVPGMWEYLSQ  131 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i---~~~~~~~~~~~~~rKP~~gm~~~~~~  131 (369)
                      ++||+.+.|+.|+++|++++|+||.+            ...+..+++.+|+   .++.++++++...+||+|.+|..+++
T Consensus       100 ~~~g~~~~L~~Lk~~g~~i~i~Tn~~------------~~~~~~~l~~~~l~~~f~d~~~~~d~~~~~KP~p~~~~~~~~  167 (257)
T d1swva_         100 PINGVKEVIASLRERGIKIGSTTGYT------------REMMDIVAKEAALQGYKPDFLVTPDDVPAGRPYPWMCYKNAM  167 (257)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEBCSSC------------HHHHHHHHHHHHHTTCCCSCCBCGGGSSCCTTSSHHHHHHHH
T ss_pred             cCCcHHHHHHHHHhcccceeecCCCc------------hhhHHHHHHHHhhcccccccccccccccccccChHHHHHHHH
Confidence            58999999999999999999999932            2233444454444   34677888888899999999999999


Q ss_pred             HhcCCcccc-CCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         132 EKNGDLAID-ISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       132 ~~~~~~~i~-~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      ++    ++. +++|+||||+.                .|+.+|+++||.++.
T Consensus       168 ~l----~~~p~~~~v~VgDs~----------------~Di~aA~~aG~~ti~  199 (257)
T d1swva_         168 EL----GVYPMNHMIKVGDTV----------------SDMKEGRNAGMWTVG  199 (257)
T ss_dssp             HH----TCCSGGGEEEEESSH----------------HHHHHHHHTTSEEEE
T ss_pred             Hh----CCCCcceEEEEeCCh----------------hhHHHHHHCCCEEEE
Confidence            96    574 58899999998                899999999999863

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=99.66  E-value=2.3e-16  Score=131.72  Aligned_cols=99  Identities=20%  Similarity=0.305  Sum_probs=82.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhcc-CCcEEEeCCcchh---------------------HHHHHHHHHHHHhC---CCc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKP-LNYTTVNRDTLGS---------------------WQKCVSVMKAALDS---GLS  325 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~-~~~~~i~~D~~~~---------------------~~~~~~~~~~~l~~---g~~  325 (369)
                      |+++|+|+|+|||||||+|++|.+. .++.+++.|+++.                     .......+..+++.   +..
T Consensus         1 MkklIii~G~pGsGKTTla~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (152)
T d1ly1a_           1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQFDTAKSILYGGDSVKG   80 (152)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHHHHTTSCCGGGCCCCHHHHHHHHHHHHHHHHHHHTSCSSCCE
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHhCCCCEEechHHHHHHHhcccchhhhhhhhhhhHHHHHHHHHHHHHHHHhhccCCC
Confidence            6789999999999999999999765 5899999988731                     12233444455554   447


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHcC
Q psy4598         326 VVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNIK  369 (369)
Q Consensus       326 vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn~  369 (369)
                      +|+|+++...+.+..+.++++.+++++.+|++++|.++|.+|++
T Consensus        81 vi~d~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~  124 (152)
T d1ly1a_          81 VIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNS  124 (152)
T ss_dssp             EEECSCCCSHHHHHHHHHHHHHHTCEEEEEECCCCHHHHHHHHT
T ss_pred             cccccccCCHHHHHHHHHhhhhhccchhhhhcCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999974

>d1cr6a1 c.108.1.2 (A:4-225) Epoxide hydrolase, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Epoxide hydrolase, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=5.2e-17  Score=143.26  Aligned_cols=101  Identities=10%  Similarity=0.107  Sum_probs=80.8

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|..|+++|++++|+||...-..     .   ......+...|+  +|+.++++++...+||+|.+|+.++++
T Consensus        98 ~~~~~~~~L~~L~~~~~~~~i~s~~~~~~~-----~---~~~~~~~~~~~l~~~fd~i~~s~~~~~~KP~p~~~~~~~~~  169 (222)
T d1cr6a1          98 INRPMLQAAIALKKKGFTTCIVTNNWLDDG-----D---KRDSLAQMMCELSQHFDFLIESCQVGMIKPEPQIYNFLLDT  169 (222)
T ss_dssp             ECHHHHHHHHHHHHTTCEEEEEECCCCCCS-----S---SHHHHHHHHHHHGGGCSEEEEHHHHSCCTTCHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHhcCCceEEeeccccccH-----H---HHHHHHHHhcChHhhhceeeehhhccCCCCChHHHHHHHHH
Confidence            578999999999999999999999532111     0   112222333333  388888888888999999999999999


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      +    +++|++|+||||+.                .|+++|+++||+++..
T Consensus       170 ~----~v~p~~~l~IgD~~----------------~Di~~A~~aG~~ti~V  200 (222)
T d1cr6a1         170 L----KAKPNEVVFLDDFG----------------SNLKPARDMGMVTILV  200 (222)
T ss_dssp             H----TSCTTSEEEEESSS----------------TTTHHHHHHTCEEEEC
T ss_pred             h----CCCcceEEEEECCH----------------HHHHHHHHcCCEEEEE
Confidence            6    79999999999997                8999999999998643

>d1o08a_ c.108.1.6 (A:) beta-Phosphoglucomutase {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: beta-Phosphoglucomutase
species: Lactococcus lactis [TaxId: 1358]

Probab=99.66  E-value=2.9e-17  Score=145.33  Aligned_cols=94  Identities=12%  Similarity=0.136  Sum_probs=82.4

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++||+.+.|+.|++.|++++++||..              ....+++.+|+  .|+.++++++...+||+|.+|+.++++
T Consensus        92 ~~~g~~~~l~~l~~~~~~i~i~s~~~--------------~~~~~l~~~~l~~~f~~i~~~~~~~~~KP~~~~~~~~l~~  157 (221)
T d1o08a_          92 VYPGILQLLKDLRSNKIKIALASASK--------------NGPFLLERMNLTGYFDAIADPAEVAASKPAPDIFIAAAHA  157 (221)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEECCSCT--------------THHHHHHHTTCGGGCSEECCTTTSSSCTTSTHHHHHHHHH
T ss_pred             ccCCceeccccccccccceEEEeecc--------------hhhHHHHhhccccccccccccccccccccChHHHHHHHHH
Confidence            68999999999999999999999942              12345677777  478888888899999999999999999


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    ++++++|+||||+.                .|+++|+++||+++.
T Consensus       158 ~----~i~~~~~l~VgD~~----------------~di~~A~~aG~~~i~  187 (221)
T d1o08a_         158 V----GVAPSESIGLEDSQ----------------AGIQAIKDSGALPIG  187 (221)
T ss_dssp             T----TCCGGGEEEEESSH----------------HHHHHHHHHTCEEEE
T ss_pred             c----CCCCceEEEEecCH----------------HHHHHHHHcCCEEEE
Confidence            6    79999999999998                899999999999854

>d1zrna_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., strain YL [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Pseudomonas sp., strain YL [TaxId: 306]

Probab=99.64  E-value=8.5e-17  Score=141.82  Aligned_cols=96  Identities=18%  Similarity=0.231  Sum_probs=83.0

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      .+|++.+.|+.|++.|++++++||..            ...+..+++..++  +|+.++++.+....||+|.+|+.++++
T Consensus        94 ~~~~~~~~l~~l~~~~~~~~i~tn~~------------~~~~~~~~~~~~~~~~fd~~~~s~~~~~~KP~p~~~~~~~~~  161 (220)
T d1zrna_          94 PFSEVPDSLRELKRRGLKLAILSNGS------------PQSIDAVVSHAGLRDGFDHLLSVDPVQVYKPDNRVYELAEQA  161 (220)
T ss_dssp             ECTTHHHHHHHHHHTTCEEEEEESSC------------HHHHHHHHHHTTCGGGCSEEEESGGGTCCTTSHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHhcCCeEEeecchH------------HHHHHHHHhhccccccccceeeeeeeeccccHHHHHHHHHHH
Confidence            47899999999999999999999943            2334555666666  478888888889999999999999999


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    +++|++++||||+.                .|+++|+++|++++.
T Consensus       162 ~----g~~p~e~l~VgD~~----------------~Di~~A~~aG~~~v~  191 (220)
T d1zrna_         162 L----GLDRSAILFVASNA----------------WDATGARYFGFPTCW  191 (220)
T ss_dssp             H----TSCGGGEEEEESCH----------------HHHHHHHHHTCCEEE
T ss_pred             h----CCCCceEEEEecCh----------------HhHHHHHHcCCEEEE
Confidence            6    79999999999998                899999999999863

>d2hcfa1 c.108.1.6 (A:2-229) Hypothetical protein CT1708 {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein CT1708
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.63  E-value=1e-16  Score=142.73  Aligned_cols=99  Identities=15%  Similarity=0.093  Sum_probs=83.1

Q ss_pred             ccccHHHHHHHHHHCC-cEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDG-YKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQ  131 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G-~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~  131 (369)
                      ++||+.+.|++|+++| ++++|+||.+            ...+..+++.+|+  +|+.+++.++...+||.|+++...+.
T Consensus        92 ~~~g~~~~L~~L~~~g~~~~~v~t~~~------------~~~~~~~l~~~gl~~~fd~i~~~~~~~~~k~~p~~~~~~~~  159 (228)
T d2hcfa1          92 LLEGVRELLDALSSRSDVLLGLLTGNF------------EASGRHKLKLPGIDHYFPFGAFADDALDRNELPHIALERAR  159 (228)
T ss_dssp             ECTTHHHHHHHHHTCTTEEEEEECSSC------------HHHHHHHHHTTTCSTTCSCEECTTTCSSGGGHHHHHHHHHH
T ss_pred             ecCchHHHHhhhhccccccccccCCCc------------chhhhhhhhhhcccccccccccccccccccchhHHHHHHhh
Confidence            5799999999999987 8999999943            3456677889998  48888888888899999999877666


Q ss_pred             HhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         132 EKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       132 ~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      .+. +.+++|++++||||+.                .|+.+|+++||+++.
T Consensus       160 ~~~-~~~~~p~~~l~VGD~~----------------~Di~aA~~aG~~~i~  193 (228)
T d2hcfa1         160 RMT-GANYSPSQIVIIGDTE----------------HDIRCARELDARSIA  193 (228)
T ss_dssp             HHH-CCCCCGGGEEEEESSH----------------HHHHHHHTTTCEEEE
T ss_pred             hhc-ccCCChhHheeecCCh----------------HHHHHHHHcCCEEEE
Confidence            542 2368899999999999                899999999999863

>d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: N-acylneuraminate-9-phosphatase NANP
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=1.3e-16  Score=143.39  Aligned_cols=94  Identities=17%  Similarity=0.242  Sum_probs=80.2

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|+ +|++++|+||.+            ...+...++.+|+  +|+.++++++...+||+|.||+.++++
T Consensus       110 ~~~~~~~~L~~L~-~~~~l~i~Tn~~------------~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~p~~~~~~~~~  176 (247)
T d2gfha1         110 LADDVKAMLTELR-KEVRLLLLTNGD------------RQTQREKIEACACQSYFDAIVIGGEQKEEKPAPSIFYHCCDL  176 (247)
T ss_dssp             CCHHHHHHHHHHH-TTSEEEEEECSC------------HHHHHHHHHHHTCGGGCSEEEEGGGSSSCTTCHHHHHHHHHH
T ss_pred             cCccHHHHHHHhh-cccceEEeeccc------------chhhhhhhhhccccccccccccccccccchhhhhhHHHHHHH
Confidence            5799999999998 689999999932            2335566777787  488777888888999999999999998


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF  180 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f  180 (369)
                      +    ++++++++||||+..               +|+.+|.++||++
T Consensus       177 ~----~~~~~~~l~iGD~~~---------------~Di~~A~~~G~~~  205 (247)
T d2gfha1         177 L----GVQPGDCVMVGDTLE---------------TDIQGGLNAGLKA  205 (247)
T ss_dssp             H----TCCGGGEEEEESCTT---------------THHHHHHHTTCSE
T ss_pred             h----hcCHHhcceeccChH---------------hHHHHHHHcCCeE
Confidence            6    799999999999973               7999999999995

>d1zd3a1 c.108.1.2 (A:2-224) Epoxide hydrolase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Epoxide hydrolase, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=7.3e-17  Score=141.38  Aligned_cols=102  Identities=15%  Similarity=0.188  Sum_probs=78.6

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCchhHHHHHHHHhc
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKN  134 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~  134 (369)
                      ++|++.+.|.+|+++|++++|+||.......  .   ..... .....+.-+|+.++++++...+||+|.+|+.+++.+ 
T Consensus       100 ~~~~~~~~l~~L~~~~~~~~i~Tn~~~~~~~--~---~~~~~-~~~~~~~~~fd~i~~s~~~~~~KP~~~~~~~~~~~~-  172 (225)
T d1zd3a1         100 INRPMLQAALMLRKKGFTTAILTNTWLDDRA--E---RDGLA-QLMCELKMHFDFLIESCQVGMVKPEPQIYKFLLDTL-  172 (225)
T ss_dssp             ECHHHHHHHHHHHHTTCEEEEEECCCCCCST--T---HHHHH-HHHHHHHTTSSEEEEHHHHTCCTTCHHHHHHHHHHH-
T ss_pred             CCccHHHHHHHHHhccCccccccccchhhHH--H---HHHHH-hhhcChHhhccEEEeccccccchhHHHHHHHHhhhc-
Confidence            5799999999999999999999994322111  1   11111 111112224787888888889999999999999996 


Q ss_pred             CCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         135 GDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       135 ~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                         +++|++++||||+.                .|+++|+++||+++.
T Consensus       173 ---~~~p~e~l~VgD~~----------------~Di~~A~~~G~~ti~  201 (225)
T d1zd3a1         173 ---KASPSEVVFLDDIG----------------ANLKPARDLGMVTIL  201 (225)
T ss_dssp             ---TCCGGGEEEEESCH----------------HHHHHHHHTTCEEEE
T ss_pred             ---ccCccceeEEecCH----------------HHHHHHHHcCCEEEE
Confidence               79999999999998                899999999999863

>d1qq5a_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xanthobacter autotrophicus [TaxId: 280]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Xanthobacter autotrophicus [TaxId: 280]

Probab=99.61  E-value=4.1e-16  Score=139.43  Aligned_cols=93  Identities=12%  Similarity=0.204  Sum_probs=79.2

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      .+|++.+.|++|+  |+.++++||.+            ...+..+++.+++  .|+.++++++..++||+|.+|++++++
T Consensus        94 ~~~~~~~~L~~l~--~~~~~v~s~~~------------~~~~~~~~~~~~~~~~fd~v~~s~~~~~~KP~p~~f~~a~~~  159 (245)
T d1qq5a_          94 PYPDAAQCLAELA--PLKRAILSNGA------------PDMLQALVANAGLTDSFDAVISVDAKRVFKPHPDSYALVEEV  159 (245)
T ss_dssp             BCTTHHHHHHHHT--TSEEEEEESSC------------HHHHHHHHHHTTCGGGCSEEEEGGGGTCCTTSHHHHHHHHHH
T ss_pred             cchhhhHHHHHHh--hhceeEEeccc------------hHHHHHHHhhcccccccccccccccccccCccHHHHHHHHHH
Confidence            4789999999884  78999999943            1234556677777  478888888899999999999999999


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      +    +++|++++||||+.                .|+.+|+++||+++
T Consensus       160 l----g~~p~e~l~VgD~~----------------~di~~A~~aG~~tv  188 (245)
T d1qq5a_         160 L----GVTPAEVLFVSSNG----------------FDVGGAKNFGFSVA  188 (245)
T ss_dssp             H----CCCGGGEEEEESCH----------------HHHHHHHHHTCEEE
T ss_pred             h----CCChhhEEEEeCCH----------------HHHHHHHHcCCeEE
Confidence            6    79999999999998                89999999999985

>d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: Hypothetical protein PH0459
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.59  E-value=1.4e-16  Score=142.19  Aligned_cols=96  Identities=18%  Similarity=0.291  Sum_probs=81.4

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|+ +||+++|+||..            ...+..+++.+|+.  |+.++++++...+||+|.+|+.++++
T Consensus       101 ~~p~~~~~L~~l~-~~~~i~i~Sn~~------------~~~~~~~l~~~gl~~~fd~i~~s~~~~~~KP~~~~~~~~~~~  167 (230)
T d1x42a1         101 LYPEVVEVLKSLK-GKYHVGMITDSD------------TEYLMAHLDALGIKDLFDSITTSEEAGFFKPHPRIFELALKK  167 (230)
T ss_dssp             BCTTHHHHHHHHB-TTBEEEEEESSC------------HHHHHHHHHHHTCGGGCSEEEEHHHHTBCTTSHHHHHHHHHH
T ss_pred             ccccHHHHHHHhh-ccCceeeeeccc------------cccchhhhcccccccccccccccccccccchhhHHHHHHHhh
Confidence            4799999999996 689999999932            23455667888885  88888887778999999999999999


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      +    ++++++++||||+.-               .|+++|+++|++++.
T Consensus       168 l----~~~p~~~l~vgD~~~---------------~Di~~A~~~G~~~v~  198 (230)
T d1x42a1         168 A----GVKGEEAVYVGDNPV---------------KDCGGSKNLGMTSIL  198 (230)
T ss_dssp             H----TCCGGGEEEEESCTT---------------TTHHHHHTTTCEEEE
T ss_pred             h----cccccccceeecCcH---------------hHHHHHHHcCCEEEE
Confidence            6    799999999999862               799999999999853

>d2ah5a1 c.108.1.6 (A:1-210) predicted phosphatase SP0104 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: predicted phosphatase SP0104
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.55  E-value=1.2e-15  Score=133.58  Aligned_cols=94  Identities=19%  Similarity=0.199  Sum_probs=78.1

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQE  132 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~  132 (369)
                      ++|++.+.|+.|+.. ++++|+||.+            ...++.+++.+|+  .|+.+++...  ..||+|.++..++++
T Consensus        85 ~~~~~~~~l~~l~~~-~~~~i~t~~~------------~~~~~~~l~~~gl~~~fd~v~~~~~--~~~~~p~~~~~~~~~  149 (210)
T d2ah5a1          85 LFPQIIDLLEELSSS-YPLYITTTKD------------TSTAQDMAKNLEIHHFFDGIYGSSP--EAPHKADVIHQALQT  149 (210)
T ss_dssp             ECTTHHHHHHHHHTT-SCEEEEEEEE------------HHHHHHHHHHTTCGGGCSEEEEECS--SCCSHHHHHHHHHHH
T ss_pred             chhHHHHHHhhhhcc-cchhhccccc------------chhhhHHHHhhcccccccccccccc--cccccccccchhhhh
Confidence            589999999999866 5899999942            3456677888888  4776666544  468999999999998


Q ss_pred             hcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         133 KNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       133 ~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      +    ++++++++||||+.                .|+.+|+++||+++..
T Consensus       150 ~----~~~~~~~v~VGDs~----------------~Di~aa~~aGi~~i~v  180 (210)
T d2ah5a1         150 H----QLAPEQAIIIGDTK----------------FDMLGARETGIQKLAI  180 (210)
T ss_dssp             T----TCCGGGEEEEESSH----------------HHHHHHHHHTCEEEEE
T ss_pred             h----hcccccceeecCCH----------------HHHHHHHHcCCeEEEE
Confidence            6    79999999999998                8999999999998654

>d1zs9a1 c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Enolase-phosphatase E1
domain: E-1 enzyme
species: Human(Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=3.4e-15  Score=132.68  Aligned_cols=96  Identities=7%  Similarity=0.150  Sum_probs=76.1

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEE-EecCCCCCCCCchhHHHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMF-VATQYDRYRKPVPGMWEYLSQ  131 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~-~~~~~~~~rKP~~gm~~~~~~  131 (369)
                      ++|++.+.|++|+++|++++|+||.+            .......++.+++.  ++.+ .+.+.....||+|.+|+.+++
T Consensus       128 ~~pg~~e~l~~L~~~g~~l~i~Tn~~------------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~KP~p~~~~~~~~  195 (253)
T d1zs9a1         128 FFADVVPAVRKWREAGMKVYIYSSGS------------VEAQKLLFGHSTEGDILELVDGHFDTKIGHKVESESYRKIAD  195 (253)
T ss_dssp             CCTTHHHHHHHHHHTTCEEEEECSSC------------HHHHHHHHHTBTTBCCGGGCSEEECGGGCCTTCHHHHHHHHH
T ss_pred             cCCCHHHHHHHHhhccCceeecCCCc------------HHHHHHHHHHcCcchhhhhcceeeccccccCCCcHHHHHHHH
Confidence            57999999999999999999999943            12234456666652  2322 222334568999999999999


Q ss_pred             HhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         132 EKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       132 ~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      ++    +++|++++||||+.                .|+.+|+++||+++.
T Consensus       196 ~~----~~~p~~~l~vgD~~----------------~dv~aA~~aG~~ti~  226 (253)
T d1zs9a1         196 SI----GCSTNNILFLTDVT----------------REASAAEEADVHVAV  226 (253)
T ss_dssp             HH----TSCGGGEEEEESCH----------------HHHHHHHHTTCEEEE
T ss_pred             Hh----CCCcCcEEEEeCCH----------------HHHHHHHHcCCEEEE
Confidence            96    79999999999998                899999999999864

>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative phosphatase SMU.1415c
species: Streptococcus mutans [TaxId: 1309]

Probab=99.51  E-value=4.9e-14  Score=127.88  Aligned_cols=47  Identities=15%  Similarity=0.111  Sum_probs=42.2

Q ss_pred             CCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCch
Q psy4598         119 RKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPE  184 (369)
Q Consensus       119 rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~pe  184 (369)
                      .||+|.|++++++++    ++++++++||||+..               +||.+|+++||+++...
T Consensus       179 gKP~p~~~~~al~~l----~i~~~~~~mIGDs~~---------------~DI~gA~~aG~~si~V~  225 (253)
T d1wvia_         179 GKPEAVIMNKALDRL----GVKRHEAIMVGDNYL---------------TDITAGIKNDIATLLVT  225 (253)
T ss_dssp             STTSHHHHHHHHHHH----TSCGGGEEEEESCTT---------------TTHHHHHHTTCEEEEES
T ss_pred             ccCCcccceehhhhc----cccccceEEEcCChH---------------HHHHHHHHCCCCEEEEC
Confidence            499999999999996    789999999999973               79999999999987653

>d1yv9a1 c.108.1.14 (A:4-256) Putative hydrolase EF1188 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative hydrolase EF1188
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.51  E-value=2e-14  Score=130.29  Aligned_cols=48  Identities=17%  Similarity=0.108  Sum_probs=42.9

Q ss_pred             CCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCch
Q psy4598         118 YRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTPE  184 (369)
Q Consensus       118 ~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~pe  184 (369)
                      ..||+|.||+++++++    ++++++++||||+..               +|+++|+++||+++...
T Consensus       178 ~~KP~~~~~~~~~~~~----gi~~~~~l~IGD~~~---------------~DI~~a~~aG~~si~V~  225 (253)
T d1yv9a1         178 IGKPKAIIMERAIAHL----GVEKEQVIMVGDNYE---------------TDIQSGIQNGIDSLLVT  225 (253)
T ss_dssp             CSTTSHHHHHHHHHHH----CSCGGGEEEEESCTT---------------THHHHHHHHTCEEEEET
T ss_pred             ecccchhHHHHHHHHh----CCCccceEEecCChH---------------HHHHHHHHCCCCEEEEC
Confidence            3799999999999986    799999999999973               79999999999987553

>d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: NagD
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=4.7e-14  Score=127.78  Aligned_cols=47  Identities=21%  Similarity=0.218  Sum_probs=42.2

Q ss_pred             CCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         118 YRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       118 ~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      .+||+|.+|+++++++    ++++++++||||+..               +||++|+++||+++.+
T Consensus       174 ~~KP~p~~~~~a~~~l----gi~p~e~v~IGD~~~---------------~DI~~a~~aG~~tilV  220 (250)
T d2c4na1         174 VGKPSPWIIRAALNKM----QAHSEETVIVGDNLR---------------TDILAGFQAGLETILV  220 (250)
T ss_dssp             CSTTSTHHHHHHHHHH----TCCGGGEEEEESCTT---------------THHHHHHHTTCEEEEE
T ss_pred             cccchhhhHhhhhhhh----cCCchheEEecCChH---------------HHHHHHHHCCCCEEEE
Confidence            3799999999999996    799999999999972               7999999999998654

>d1vjra_ c.108.1.14 (A:) Hypothetical protein TM1742 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Hypothetical protein TM1742
species: Thermotoga maritima [TaxId: 2336]

Probab=99.48  E-value=4.7e-14  Score=128.18  Aligned_cols=47  Identities=19%  Similarity=0.153  Sum_probs=42.2

Q ss_pred             CCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         118 YRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       118 ~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      +.||+|.+++.+++++    ++++++++||||+..               +||.+|+|+||+++.+
T Consensus       183 ~~KP~p~~~~~a~~~l----~~~~~~~lmVGD~~~---------------~DI~ga~~aG~~si~V  229 (261)
T d1vjra_         183 AGKPNPLVVDVISEKF----GVPKERMAMVGDRLY---------------TDVKLGKNAGIVSILV  229 (261)
T ss_dssp             CSTTSTHHHHHHHHHH----TCCGGGEEEEESCHH---------------HHHHHHHHHTCEEEEE
T ss_pred             cCCCcHHHHHHHHhhh----ccCchhcceecCChh---------------HHHHHHHHCCCcEEEE
Confidence            4699999999999996    799999999999972               7999999999998654

>d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Putative phosphatase YihX
species: Escherichia coli [TaxId: 562]

Probab=99.46  E-value=1.3e-14  Score=123.58  Aligned_cols=98  Identities=15%  Similarity=0.212  Sum_probs=76.9

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCCCCCCCCchhHHHHHHHHhc
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKN  134 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~  134 (369)
                      +++++.+.+..++.+|++++++||.+-..... ...    ....+..    +|+.+++++....+||+|.+|+.+++++ 
T Consensus        85 ~~~~~~~l~~~l~~~~~~~~i~t~~~~~~~~~-~~~----~~~~l~~----~fd~v~~s~~~~~~Kp~~~~~~~~~~~~-  154 (197)
T d2b0ca1          85 LRPEVIAIMHKLREQGHRVVVLSNTNRLHTTF-WPE----EYPEIRD----AADHIYLSQDLGMRKPEARIYQHVLQAE-  154 (197)
T ss_dssp             ECHHHHHHHHHHHHTTCEEEEEECCCCCTTSC-CGG----GCHHHHH----HCSEEEEHHHHTCCTTCHHHHHHHHHHH-
T ss_pred             cCchhHHHHHHHHhcCCeEEEEeCccHHHHHH-HHH----Hcccchh----hccceeecccccccccchHHHHHHHHhc-
Confidence            57899999999999999999999954322111 000    0001111    3677778888889999999999999996 


Q ss_pred             CCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         135 GDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       135 ~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                         ++++++|+||||+.                .|+++|+++||+++
T Consensus       155 ---~~~~~~~l~vgDs~----------------~di~~A~~aG~~ti  182 (197)
T d2b0ca1         155 ---GFSPSDTVFFDDNA----------------DNIEGANQLGITSI  182 (197)
T ss_dssp             ---TCCGGGEEEEESCH----------------HHHHHHHTTTCEEE
T ss_pred             ---CCCCCeEEEEeCCH----------------HHHHHHHHcCCEEE
Confidence               79999999999998                89999999999985

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=99.42  E-value=3.6e-13  Score=119.17  Aligned_cols=104  Identities=16%  Similarity=0.218  Sum_probs=87.4

Q ss_pred             hccccccEEEEEEcCCCCcHHHHHHHHhccC------CcEEEeCCcchh----------------HHHHHHHHHHHHhCC
Q psy4598         266 VMKAALDSVLIMIGSQGSGKSSFVSTYLKPL------NYTTVNRDTLGS----------------WQKCVSVMKAALDSG  323 (369)
Q Consensus       266 ~~~~~~~~lIll~G~pGSGKSTla~~L~~~~------~~~~i~~D~~~~----------------~~~~~~~~~~~l~~g  323 (369)
                      .+....+.+|+|+|+|||||||+|+.|++.+      ++.+++.|.++.                +.++...+.....+|
T Consensus        18 ~~~~~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~~l~~~l~ys~~~r~~~~~r~~~~a~~~~~~g   97 (208)
T d1m7ga_          18 ELRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNKDLGFSEADRNENIRRIAEVAKLFADSN   97 (208)
T ss_dssp             HHHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHHhhcCCCCCChhHHHHHHHHHHHHHHHHhccC
Confidence            3555667899999999999999999998643      678899998752                345667778888999


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHHH------hcCCeEEEEEEeCCHHHHHHHcC
Q psy4598         324 LSVVVDNTNPDKESRHRYIEAAK------QHGVRCIAVHMNISKEHAKHNIK  369 (369)
Q Consensus       324 ~~vIiD~tn~~~~~r~~~~~la~------~~~~~v~~v~l~~~~e~~~~Rn~  369 (369)
                      ..||++...+....|+...++..      ..+.++..||++||.++|.+|+.
T Consensus        98 ~~viv~~i~~~~~~R~~~r~i~~~~~~~~~~~~~~~eVyv~~~le~~~~Rd~  149 (208)
T d1m7ga_          98 SIAITSFISPYRKDRDTARQLHEVATPGEETGLPFVEVYVDVPVEVAEQRDP  149 (208)
T ss_dssp             CEEEEECCCCCHHHHHHHHHHHHCCCTTCSCCCCEEEEEEECCHHHHHTSCT
T ss_pred             CceeeecccccHHHHHHHHHHhhhhccchhcCCceEEEEEcCCHHHHHHhhc
Confidence            99999999999999999888753      46678999999999999999963

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=99.40  E-value=9.4e-13  Score=110.63  Aligned_cols=99  Identities=16%  Similarity=0.216  Sum_probs=77.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCc-EEEeCCcch-------------------hHHHHHHHHHHHHhCCCcEEEeC
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNY-TTVNRDTLG-------------------SWQKCVSVMKAALDSGLSVVVDN  330 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~-~~i~~D~~~-------------------~~~~~~~~~~~~l~~g~~vIiD~  330 (369)
                      |+++|+|+|+|||||||+|++|++.++. .+++.|.++                   .++.+...+...+..+..+|+|.
T Consensus         1 M~klI~i~G~~GsGKTTva~~L~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~   80 (176)
T d2bdta1           1 MKKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTVNFLLAQNDVVLDY   80 (176)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHHHHHHTTCEEEEES
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHcCCCEEEehHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence            5689999999999999999999999864 566777763                   13445666777888999999999


Q ss_pred             CCCCHHHHHHHHHHHHh-cCCeEEEEEEeCCHHHHHHHcC
Q psy4598         331 TNPDKESRHRYIEAAKQ-HGVRCIAVHMNISKEHAKHNIK  369 (369)
Q Consensus       331 tn~~~~~r~~~~~la~~-~~~~v~~v~l~~~~e~~~~Rn~  369 (369)
                      +......+......... .+..+.++++.+|.+++.+|+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R~~  120 (176)
T d2bdta1          81 IAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDA  120 (176)
T ss_dssp             CCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTT
T ss_pred             ccccHHHHHHHHHHHHhcCCCceEEEeccccHHHHHHHHH
Confidence            98766666554444333 4667889999999999999863

>d2fdra1 c.108.1.6 (A:3-224) Hypothetical protein Atu0790 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein Atu0790
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.39  E-value=2.1e-14  Score=126.63  Aligned_cols=93  Identities=9%  Similarity=0.109  Sum_probs=73.4

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eE-EEEecC--CCCCCCCchhHHHHH
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQ-MFVATQ--YDRYRKPVPGMWEYL  129 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~-~~~~~~--~~~~rKP~~gm~~~~  129 (369)
                      ++|++.+.|++|+   .+.+|+||..            ...+..+++.+++.  |+ ++++..  .....||+|.+|..+
T Consensus        86 ~~~g~~~~L~~l~---~~~~i~t~~~------------~~~~~~~l~~~~l~~~f~~~~~~~~~~~~~~~KP~~~~~~~~  150 (222)
T d2fdra1          86 IIDGVKFALSRLT---TPRCICSNSS------------SHRLDMMLTKVGLKPYFAPHIYSAKDLGADRVKPKPDIFLHG  150 (222)
T ss_dssp             BCTTHHHHHHHCC---SCEEEEESSC------------HHHHHHHHHHTTCGGGTTTCEEEHHHHCTTCCTTSSHHHHHH
T ss_pred             hhhhHHHHhhhcc---ccceeeeecc------------hhhhhhhhcccccccccceeecccccccccccccCHHHHHHH
Confidence            5789998888875   4567899842            34466778888883  54 344443  246789999999999


Q ss_pred             HHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccC
Q psy4598         130 SQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFT  182 (369)
Q Consensus       130 ~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~  182 (369)
                      ++++    +++|++|+||||+.                .|+.+|+++||.++.
T Consensus       151 ~~~l----~~~p~~~l~vgDs~----------------~dv~aA~~aG~~~i~  183 (222)
T d2fdra1         151 AAQF----GVSPDRVVVVEDSV----------------HGIHGARAAGMRVIG  183 (222)
T ss_dssp             HHHH----TCCGGGEEEEESSH----------------HHHHHHHHTTCEEEE
T ss_pred             HHhh----CCCCceEEEEcCCH----------------HHHHHHHHcCCEEEE
Confidence            9996    79999999999998                899999999999864

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=7.4e-13  Score=115.56  Aligned_cols=97  Identities=18%  Similarity=0.218  Sum_probs=76.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchh--------------------------HHHHHHHHHHHH
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGS--------------------------WQKCVSVMKAAL  320 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~--------------------------~~~~~~~~~~~l  320 (369)
                      |.+|+|+|+|||||||+|++|++.+     +...++.|.++.                          .......+.+.+
T Consensus         2 p~li~l~GlpgsGKSTla~~L~~~l~~~~~~~~~~~~D~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFL   81 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHhcCCCCeEEcccceehhhccccccccccccccccchhhHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999864     467888887641                          011122222222


Q ss_pred             --hCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         321 --DSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       321 --~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                        +.|..+|+|+++...+.|..+.++++..+..+.++.+.|+.+...++|
T Consensus        82 ~~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (213)
T d1bifa1          82 SEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICVDPEVIAAN  131 (213)
T ss_dssp             HTTCCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCCCHHHHHHH
T ss_pred             HhcCCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeeccHHHHHHHh
Confidence              346788999999999999999999999999999999999988776654

>d2feaa1 c.108.1.20 (A:2-227) 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: MtnX-like
domain: 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX
species: Bacillus subtilis [TaxId: 1423]

Probab=99.38  E-value=4.3e-14  Score=125.06  Aligned_cols=95  Identities=8%  Similarity=0.000  Sum_probs=76.2

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eE---EEEe----------cCCCCCC
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQ---MFVA----------TQYDRYR  119 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~---~~~~----------~~~~~~r  119 (369)
                      ++|++.+.|+.|+++|++++|+||.            ....++.+++.+|++  |.   +.+.          .....++
T Consensus        76 l~pg~~~~l~~L~~~g~~~~ivS~~------------~~~~i~~~l~~l~~~~~~~an~~~~~~~~~~~~~~~~~~~~~~  143 (226)
T d2feaa1          76 IREGFREFVAFINEHEIPFYVISGG------------MDFFVYPLLEGIVEKDRIYCNHASFDNDYIHIDWPHSCKGTCS  143 (226)
T ss_dssp             BCTTHHHHHHHHHHHTCCEEEEEEE------------EHHHHHHHHTTTSCGGGEEEEEEECSSSBCEEECTTCCCTTCC
T ss_pred             hhHHHHHHHHHHHhcccccccCCcc------------hhhhHHHHHHHcCCccceeeeeEEEeCCcceeccccccccccc
Confidence            6899999999999999999999993            245677788888874  21   1111          1234457


Q ss_pred             CCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         120 KPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       120 KP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      +|.+.+...+++.+    ++++++++||||+.                +|+.+|+++|+.|.
T Consensus       144 ~~k~~~~~~~~~~~----~~~~~~~i~iGDs~----------------~Dl~~a~~A~~~~a  185 (226)
T d2feaa1         144 NQCGCCKPSVIHEL----SEPNQYIIMIGDSV----------------TDVEAAKLSDLCFA  185 (226)
T ss_dssp             SCCSSCHHHHHHHH----CCTTCEEEEEECCG----------------GGHHHHHTCSEEEE
T ss_pred             cCCHHHHHHHHHHh----cCCCceEEEEeCch----------------hhHHHHHHCCEEEE
Confidence            88899999999986    78999999999999                89999999999874

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.35  E-value=2.1e-12  Score=112.02  Aligned_cols=102  Identities=18%  Similarity=0.316  Sum_probs=78.9

Q ss_pred             ccccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh--------H---H------------HHHHHHHHH--H
Q psy4598         267 MKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS--------W---Q------------KCVSVMKAA--L  320 (369)
Q Consensus       267 ~~~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~--------~---~------------~~~~~~~~~--l  320 (369)
                      |+.++|.+|+++|+|||||||+|+.|++.+++.+|+.+++ +.        .   +            .....+...  .
T Consensus         1 ~~~~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~g~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (194)
T d1qf9a_           1 MEKSKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIVTVKLLKNAIDA   80 (194)
T ss_dssp             CCCCCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCceEchhhHHHHHhhhhhhhhhhhhhHhhhccccchHHHHHHHHHHhhh
Confidence            5667899999999999999999999999999999999765 21        0   0            011111111  1


Q ss_pred             hCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         321 DSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       321 ~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      .....+|+|+...+...+..+.+.......+..+|++++|++++.+|.
T Consensus        81 ~~~~~~i~dg~p~~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~R~  128 (194)
T d1qf9a_          81 NQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRL  128 (194)
T ss_dssp             STTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHH
T ss_pred             hhcCCeEEEecchhhhhHHHHHhhhhhcccccEEEEeecchHHHHHHH
Confidence            234579999999899888888887777777888999999999999883

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=99.32  E-value=6.1e-12  Score=106.01  Aligned_cols=95  Identities=15%  Similarity=0.145  Sum_probs=76.1

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh---------------------HHHHHHHHHHHHhCCCcEEE
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS---------------------WQKCVSVMKAALDSGLSVVV  328 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~---------------------~~~~~~~~~~~l~~g~~vIi  328 (369)
                      ..+.+|+|+|+|||||||+|+.|++.+++.+++.|.+..                     ...+...+...+..+..+++
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALNDAAFAMQRTNKVSLI   83 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHCSEEEE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhCCCeechhhhhHHHHhhhhccCcceehhhhHHHHHHHHHHHHHHHhccCceEe
Confidence            346899999999999999999999999999999998731                     22334455666677778888


Q ss_pred             eCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         329 DNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       329 D~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      +..+.....+    +.+++.+.++.++++++|++++.+|.
T Consensus        84 ~~~~~~~~~~----~~~~~~~~~~~~v~l~~~~e~~~~Rl  119 (171)
T d1knqa_          84 VCSALKKHYR----DLLREGNPNLSFIYLKGDFDVIESRL  119 (171)
T ss_dssp             ECCCCSHHHH----HHHHTTCTTEEEEEEECCHHHHHHHH
T ss_pred             eccchHHHHH----HHHHHhCCCceEEeecCCHHHHHHHH
Confidence            8888765544    45577888999999999999999885

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=99.23  E-value=2e-11  Score=102.75  Aligned_cols=96  Identities=15%  Similarity=0.119  Sum_probs=69.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCc--EEEeCCcch------------------------------hHHHHHHHHHHH
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNY--TTVNRDTLG------------------------------SWQKCVSVMKAA  319 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~--~~i~~D~~~------------------------------~~~~~~~~~~~~  319 (369)
                      .++|+|+|+|||||||+|+.|++.++.  .+++.|.+.                              .+......+...
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRALEGAWAEGVVAM   82 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcCCCeEEeecchhhccccccccchhHHhhhhcccchhHHHHHHHHHHHHHHHHHHH
Confidence            368999999999999999999999874  445544431                              022234445556


Q ss_pred             HhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         320 LDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       320 l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      .+.+..+|++.+.............+ ..+..+.+|++.||++++.+|.
T Consensus        83 ~~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~v~l~~~~e~~~~R~  130 (178)
T d1qhxa_          83 ARAGARIIIDDVFLGGAAAQERWRSF-VGDLDVLWVGVRCDGAVAEGRE  130 (178)
T ss_dssp             HHTTCEEEEEECCTTTHHHHHHHHHH-HTTCCEEEEEEECCHHHHHHHH
T ss_pred             HhhccceEEeeeecchHHHHHHHHHh-hcCCceeecccCCCHHHHHHHH
Confidence            77888899998876555444333332 3478888999999999999985

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.18  E-value=3.6e-11  Score=101.37  Aligned_cols=91  Identities=18%  Similarity=0.166  Sum_probs=69.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCC--cEEEeCCcchh---------------------HHHHHHHHHHHHhCCCcEEEe
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLN--YTTVNRDTLGS---------------------WQKCVSVMKAALDSGLSVVVD  329 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~--~~~i~~D~~~~---------------------~~~~~~~~~~~l~~g~~vIiD  329 (369)
                      ++|+|+|+|||||||+|+.|++.++  +.+++.|.++.                     +......+...+..+..||+|
T Consensus         5 ~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~   84 (176)
T d1zp6a1           5 NILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGYFVILD   84 (176)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHTCCSSCCCTTSSSHHHHHHHHHHHHHHHHHHHHHTSCEEEEC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHHHHHHhcCCcccccchhhhHHHHHHHHHHHHHHHHHhcCCCeEec
Confidence            7899999999999999999999986  45567777631                     233445566667888899999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         330 NTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       330 ~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      .... ...+.    .....+..+.+++++++++++.+|.
T Consensus        85 ~~~~-~~~~~----~~~~~~~~~~~i~l~~~~e~~~~R~  118 (176)
T d1zp6a1          85 GVVR-PDWLP----AFTALARPLHYIVLRTTAAEAIERC  118 (176)
T ss_dssp             SCCC-TTTTH----HHHTTCSCEEEEEEECCHHHHHHHH
T ss_pred             cccc-HHHHH----HHHhcccccccccCCCCHHHHHHHH
Confidence            8763 33333    3355677889999999999999885

>d1nnla_ c.108.1.4 (A:) Phosphoserine phosphatase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphoserine phosphatase
domain: Phosphoserine phosphatase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.7e-11  Score=107.18  Aligned_cols=92  Identities=16%  Similarity=0.287  Sum_probs=65.2

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecC-----CC-----CCCCCch-
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQMFVATQ-----YD-----RYRKPVP-  123 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~~~~~~~~-----~~-----~~rKP~~-  123 (369)
                      ++||+.+.|+.|+++|++++|+|+            .+...++.+++.+|++...++|.+     +.     ....|.. 
T Consensus        83 l~pg~~~~i~~lk~~G~~~~ivS~------------~~~~~v~~i~~~lgi~~~~v~an~~~~~~~G~~~g~~~~~p~~~  150 (217)
T d1nnla_          83 LTPGIRELVSRLQERNVQVFLISG------------GFRSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPTAE  150 (217)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEEEE------------EEHHHHHHHHHHTTCCGGGEEEECEEECTTSCEEEECTTSGGGS
T ss_pred             cCHHHHHHHHHHHhCCCEEEEECC------------CchHHHHHHHHHhCCcccceeeeeeeeeehhccccceeeeeeec
Confidence            579999999999999999999998            235567888999998632111210     00     1122222 


Q ss_pred             -----hHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc
Q psy4598         124 -----GMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF  180 (369)
Q Consensus       124 -----gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f  180 (369)
                           .....+.+      ++++++++||||+.                +|+.+++.+|+.+
T Consensus       151 ~~~K~~~v~~~~~------~~~~~~~~~vGDs~----------------~Di~~~~~ag~~v  190 (217)
T d1nnla_         151 SGGKGKVIKLLKE------KFHFKKIIMIGDGA----------------TDMEACPPADAFI  190 (217)
T ss_dssp             TTHHHHHHHHHHH------HHCCSCEEEEESSH----------------HHHTTTTTSSEEE
T ss_pred             cchHHHHHHHHHh------ccCccccEEEEeCH----------------hhHHHHHhCCceE
Confidence                 23333322      46789999999999                8999999999876

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.04  E-value=3.2e-10  Score=97.00  Aligned_cols=93  Identities=15%  Similarity=0.236  Sum_probs=69.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch-hH-----------------------HHHHHHHHHHH----hCCCcE
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG-SW-----------------------QKCVSVMKAAL----DSGLSV  326 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~~~~~i~~D~~~-~~-----------------------~~~~~~~~~~l----~~g~~v  326 (369)
                      |+|.|+|||||||+|+.|++.+++.+|+.+++. ..                       ..........+    ..+..+
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~g~~~i~~~d~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~   84 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDIMVNMIKDELTNNPACKNGF   84 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHCGGGGSCE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCceEeccccceeccccCChHHHHHHHHHhhhcccccchhHHHHHHHHhcCccccCCE
Confidence            567799999999999999999999999997652 10                       00111111111    234579


Q ss_pred             EEeCCCCCHHHHHHHHHHHHhcCC-eEEEEEEeCCHHHHHHH
Q psy4598         327 VVDNTNPDKESRHRYIEAAKQHGV-RCIAVHMNISKEHAKHN  367 (369)
Q Consensus       327 IiD~tn~~~~~r~~~~~la~~~~~-~v~~v~l~~~~e~~~~R  367 (369)
                      |+|+...+..+...+..++...+. +..+++++++.+++.+|
T Consensus        85 i~dg~p~~~~q~~~~~~~l~~~~~~~~~vi~L~~~~~~~~~R  126 (180)
T d1akya1          85 ILDGFPRTIPQAEKLDQMLKEQGTPLEKAIELKVDDELLVAR  126 (180)
T ss_dssp             EEESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHH
T ss_pred             eccCccchhhhHHHHHhhHHHcCCCceeeeecccccchhhhc
Confidence            999999898888888887777766 45789999999999988

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=99.04  E-value=2e-10  Score=97.38  Aligned_cols=89  Identities=19%  Similarity=0.278  Sum_probs=58.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh------------------HHHHHHHHHHHHhCCCcEEEeCCC-
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS------------------WQKCVSVMKAALDSGLSVVVDNTN-  332 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~------------------~~~~~~~~~~~l~~g~~vIiD~tn-  332 (369)
                      .+.|+|+|+|||||||+|+.|++.+++.+++.|.+..                  +..+...+.........++..... 
T Consensus         2 ~~~Iil~G~~GsGKSTia~~LA~~Lg~~~id~D~~ie~~~g~~i~ei~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~   81 (170)
T d1e6ca_           2 TEPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRESEALQAVATPNRVVATGGGM   81 (170)
T ss_dssp             CCCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHCCSSEEEECCTTG
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHhCCCEEehhhhhhhhhhhhhhhhhcccchHHHHHHHHHHHHhhccccceecccccc
Confidence            3457788999999999999999999999999998621                  122222222223334444444332 


Q ss_pred             -CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         333 -PDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       333 -~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                       .....|..+    ++++   .+||+++|.+++.+|
T Consensus        82 ~~~~~~~~~l----~~~~---~~v~L~~~~e~l~~R  110 (170)
T d1e6ca_          82 VLLEQNRQFM----RAHG---TVVYLFAPAEELALR  110 (170)
T ss_dssp             GGSHHHHHHH----HHHS---EEEEEECCHHHHHHH
T ss_pred             hhhhHHHHhh----hccc---eeEEEecCchhHHHH
Confidence             244444333    3444   488999999998887

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.02  E-value=7.3e-10  Score=95.73  Aligned_cols=100  Identities=9%  Similarity=0.176  Sum_probs=69.4

Q ss_pred             hccccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh---------H-------------------HHHHHHH
Q psy4598         266 VMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS---------W-------------------QKCVSVM  316 (369)
Q Consensus       266 ~~~~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~---------~-------------------~~~~~~~  316 (369)
                      .+.|+..++|+|+|||||||||+|+.|++++++.+|+.+++ +.         .                   .......
T Consensus         2 ~~~~~~~~iI~i~GppGSGKsT~a~~La~~~g~~~is~gdl~R~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~   81 (196)
T d1ukza_           2 AFSPDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALLRNAI   81 (196)
T ss_dssp             CSCTTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             CCCCCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEehhHHHHHHhhhcccHHHHHHHHhhhccccccchhHHHHHHHHH
Confidence            34567778999999999999999999999999999997543 21         0                   0011112


Q ss_pred             HHHH-hCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         317 KAAL-DSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       317 ~~~l-~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      .... .....+|+|....+..+...+.   +....+-.++++++|.+++.+|.
T Consensus        82 ~~~~~~~~~~~vl~g~p~~~~q~~~~~---~~~~~~~~~i~l~~~~e~~~~R~  131 (196)
T d1ukza_          82 SDNVKANKHKFLIDGFPRKMDQAISFE---RDIVESKFILFFDCPEDIMLERL  131 (196)
T ss_dssp             HHHHHTTCCEEEEETCCCSHHHHHHHH---HHTCCCSEEEEEECCHHHHHHHH
T ss_pred             HhhhccCCCceeeeccchhHHHHHHHH---HhccccceeeccCCCHHHHHHHH
Confidence            2222 2345789998877655444433   33445667999999999998873

>d2g80a1 c.108.1.22 (A:17-241) Protein UTR4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Enolase-phosphatase E1
domain: Protein UTR4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.02  E-value=9.8e-12  Score=108.44  Aligned_cols=61  Identities=11%  Similarity=0.110  Sum_probs=50.7

Q ss_pred             HcCC--CeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCC
Q psy4598         102 SLNV--PVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLA  179 (369)
Q Consensus       102 ~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~  179 (369)
                      .+|+  .|+.+++++. ...||+|.+|+.+++++    +++|++|+||||+.                .|+.+|+++||+
T Consensus       140 ~~~l~~~Fd~v~~~~~-~~~KP~p~~f~~~~~~l----g~~p~e~l~VgD~~----------------~Dv~~A~~aG~~  198 (225)
T d2g80a1         140 SLDLNSYIDGYFDINT-SGKKTETQSYANILRDI----GAKASEVLFLSDNP----------------LELDAAAGVGIA  198 (225)
T ss_dssp             CBCCGGGCCEEECHHH-HCCTTCHHHHHHHHHHH----TCCGGGEEEEESCH----------------HHHHHHHTTTCE
T ss_pred             hcCCccccceeeeccc-cCCCCChhHhHHHHHhc----ccCchhceeecCCH----------------HHHHHHHHcCCE
Confidence            3455  3776666643 45799999999999996    79999999999998                899999999999


Q ss_pred             ccCc
Q psy4598         180 FFTP  183 (369)
Q Consensus       180 f~~p  183 (369)
                      ++..
T Consensus       199 ti~v  202 (225)
T d2g80a1         199 TGLA  202 (225)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8653

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.00  E-value=9.1e-10  Score=99.09  Aligned_cols=100  Identities=17%  Similarity=0.280  Sum_probs=80.6

Q ss_pred             ccccEEEEEEcCCCCcHHHHHHHHhccC--CcEEEeCCcchh----H--------------------HHHHHHHHHHHhC
Q psy4598         269 AALDSVLIMIGSQGSGKSSFVSTYLKPL--NYTTVNRDTLGS----W--------------------QKCVSVMKAALDS  322 (369)
Q Consensus       269 ~~~~~lIll~G~pGSGKSTla~~L~~~~--~~~~i~~D~~~~----~--------------------~~~~~~~~~~l~~  322 (369)
                      ...|+.|+|.|||||||||+|++++..+  +...|+.|.++.    +                    ..........+..
T Consensus        29 ~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (273)
T d1gvnb_          29 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQ  108 (273)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTTSTTHHHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHHHhccCcccchhhhHHHHHHHHhhccchHHHHHHHHHhh
Confidence            3457899999999999999999999986  678899988741    0                    1122233455667


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         323 GLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       323 g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      +.+.++|.++........+...+...++.+.+.+++++.+++..|+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  154 (273)
T d1gvnb_         109 GYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGT  154 (273)
T ss_dssp             TCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHH
T ss_pred             CCCCcccccccchHHHHHHHHHHHHcCCeEEEEecCCCchhhhhHH
Confidence            8889999999888888889999999999999999999998887653

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.2e-09  Score=93.92  Aligned_cols=96  Identities=11%  Similarity=0.215  Sum_probs=67.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh---------HHH-------------------HHHHHHHHH--
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS---------WQK-------------------CVSVMKAAL--  320 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~---------~~~-------------------~~~~~~~~l--  320 (369)
                      |.+|+|.|+|||||||+|+.|++.+++.||+..++ |.         +..                   .........  
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~~g~~~i~~g~llR~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~   80 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAA   80 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHCTTSTTHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCceEcHHHHHHHHHHhhhhhHHHHHHHHHhcCCccccchhhHHHHHhhcccchh
Confidence            67899999999999999999999999999987554 21         000                   011111111  


Q ss_pred             -hCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         321 -DSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       321 -~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                       .....+++|+...+......+..........-.+++++++.+++.+|
T Consensus        81 ~~~~~~~~~~g~pr~~~~~~~l~~~~~~~~~~~~vi~l~~~~~~~~~r  128 (194)
T d1teva_          81 NAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIER  128 (194)
T ss_dssp             CTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHH
T ss_pred             hhcccceeeccchhhHHHHHHHhhhhhccccccEEEeecCcchhheee
Confidence             23457899999888776666655555444555678999999888776

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.97  E-value=7.1e-10  Score=94.57  Aligned_cols=95  Identities=15%  Similarity=0.240  Sum_probs=71.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchhH------------------------HHHHHHHHHHH---hCCCcE
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSW------------------------QKCVSVMKAAL---DSGLSV  326 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~~------------------------~~~~~~~~~~l---~~g~~v  326 (369)
                      -|++.|+|||||||+|+.|++.+++.+|+.+++-..                        +.......+.+   .....+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g~~~i~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~   81 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSDLTNELVDDRLNNPDAANGF   81 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHTTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSGGGTTCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceEchHHHHHHHHhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHHhhCccccccE
Confidence            378889999999999999999999999998765210                        01112222222   335579


Q ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCe-EEEEEEeCCHHHHHHHc
Q psy4598         327 VVDNTNPDKESRHRYIEAAKQHGVR-CIAVHMNISKEHAKHNI  368 (369)
Q Consensus       327 IiD~tn~~~~~r~~~~~la~~~~~~-v~~v~l~~~~e~~~~Rn  368 (369)
                      |+|+..........+.+.....+.. -.++++++|.+++.+|.
T Consensus        82 i~d~~p~~~~~~~~l~~~~~~~~~~~~~vi~l~~~~e~l~~R~  124 (181)
T d2cdna1          82 ILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERL  124 (181)
T ss_dssp             EEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHH
T ss_pred             EecccccchhHHHHHHHHHHhcCCCccEEEeccCCHHHHHhhh
Confidence            9999998888888888877766654 46899999999998874

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=4.4e-10  Score=96.18  Aligned_cols=98  Identities=15%  Similarity=0.213  Sum_probs=70.2

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCC-----cEEEeCCcch----------------hHHHHHHHHHHHHhCCCcEEEe
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLN-----YTTVNRDTLG----------------SWQKCVSVMKAALDSGLSVVVD  329 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~-----~~~i~~D~~~----------------~~~~~~~~~~~~l~~g~~vIiD  329 (369)
                      +..+|+|+|+|||||||+|+.|++.++     ..++..|.++                .++.....+......+..++++
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITS   97 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTTTTTTTCCSSHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCccchhHHhhhcccccccchhhhHHHHHHHHHHHHHHHHHhcCCccccc
Confidence            457999999999999999999998763     3444444432                1233455566677888899999


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         330 NTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       330 ~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      ..+.....+..+..+.+.....+..+++.++......++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  136 (195)
T d1x6va3          98 FISPYTQDRNNARQIHEGASLPFFEVFVDAPLHVCEQRD  136 (195)
T ss_dssp             CCCCCHHHHHHHHHHHHTTTCCEEEEEECC---------
T ss_pred             cccchHHHHHHHHHHHhccccccccccchhheeeehhhc
Confidence            999999999999998888888888888888877666554

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=98.94  E-value=6.3e-10  Score=95.67  Aligned_cols=94  Identities=7%  Similarity=0.038  Sum_probs=63.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch-h--------HHHH-------------------HHHHHHHHhCC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG-S--------WQKC-------------------VSVMKAALDSG  323 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~-~--------~~~~-------------------~~~~~~~l~~g  323 (369)
                      |..|+|.|||||||||+|+.|++.+++.+|+.+.+. .        ....                   ...........
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~   82 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPDEIVVNMVKERLRQPDAQE   82 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHSHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHCCcEEehhHHHHHhhhcccHHHHHHHHHHhcCCcccceeehhhhhhHhhhccccc
Confidence            556899999999999999999999999999987652 1        0000                   00111111223


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         324 LSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       324 ~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      ..+|+|+...+......+..   ....+-.++++++|.+++.+|-
T Consensus        83 ~~~vid~~~~~~~q~~~l~~---~~~~p~~~i~L~~~~e~l~~R~  124 (189)
T d1zaka1          83 NGWLLDGYPRSYSQAMALET---LEIRPDTFILLDVPDELLVERV  124 (189)
T ss_dssp             TCEEEESCCCSHHHHHHHHT---TTCCCSEEEEEECCHHHHHHHH
T ss_pred             CcEEeeccchhhHHHhhhhh---cccccchheeechhhhhhhhhc
Confidence            46899998876655544422   2223446899999999998883

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=98.94  E-value=1.8e-09  Score=93.21  Aligned_cols=96  Identities=15%  Similarity=0.121  Sum_probs=64.0

Q ss_pred             ccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hhH-----------------------HHHHHHHHHHH--hC
Q psy4598         269 AALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GSW-----------------------QKCVSVMKAAL--DS  322 (369)
Q Consensus       269 ~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~~-----------------------~~~~~~~~~~l--~~  322 (369)
                      +++..-|+|.|+|||||||+|+.|++++++.||+.+++ +..                       +.+.....+.+  ..
T Consensus         3 ~~r~mrIiliG~PGSGKtT~a~~La~~~g~~~is~gdllr~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~~~~~   82 (189)
T d2ak3a1           3 SARLLRAAIMGAPGSGKGTVSSRITKHFELKHLSSGDLLRDNMLRGTEIGVLAKTFIDQGKLIPDDVMTRLVLHELKNLT   82 (189)
T ss_dssp             SSCCCEEEEECCTTSSHHHHHHHHHHHBCCEEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHT
T ss_pred             CCcceeEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhhhhhhHHHHHHhhhhhhccchhhhhhhhhhhhhhh
Confidence            34445566779999999999999999999999998664 210                       00111112111  23


Q ss_pred             CCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         323 GLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       323 g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      ...+|+|+...+..+...+-    +.--...++++++|.+++.+|.
T Consensus        83 ~~~~ildGfPr~~~q~~~l~----~~~~~~~vi~L~v~~~~l~~R~  124 (189)
T d2ak3a1          83 QYNWLLDGFPRTLPQAEALD----RAYQIDTVINLNVPFEVIKQRL  124 (189)
T ss_dssp             TSCEEEESCCCSHHHHHHHH----TTCCCCEEEEEECCHHHHHHHH
T ss_pred             hcCcccccccchhhHHHHhh----hcCcceEEEEEeccchhhhhhc
Confidence            45699999887766554432    1112346799999999998884

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=98.89  E-value=7.2e-10  Score=93.20  Aligned_cols=85  Identities=19%  Similarity=0.223  Sum_probs=60.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch------------------hHHHHHHHHHHHHhCCCcEEEeCCCCCHH
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG------------------SWQKCVSVMKAALDSGLSVVVDNTNPDKE  336 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~~~~~i~~D~~~------------------~~~~~~~~~~~~l~~g~~vIiD~tn~~~~  336 (369)
                      |+|+|+|||||||+++.|++.+++.+++.|.+-                  .++.+...+.+.+.....+|+...... .
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~~~~~d~d~~ie~~~g~~i~~~~~~~g~~~~r~~e~~v~~~l~~~~~~v~~~~g~~-~   81 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQEQKMADFFSSCEKACIATGGGF-V   81 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHHTSCHHHHHHHHCHHHHHHHHHHHHHHHTTCCSEEEECCTTG-G
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEecCchhhhHHhhhhhhHHHhhhhccchhhhhhhchhhhhccccccccccch-h
Confidence            678899999999999999999999999998751                  133444555666666666666655422 1


Q ss_pred             HHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         337 SRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       337 ~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      .+.    ..++++   .+||+++|.+++.+|
T Consensus        82 ~~~----~l~~~~---~vI~L~~s~~~l~~R  105 (161)
T d1viaa_          82 NVS----NLEKAG---FCIYLKADFEYLKKR  105 (161)
T ss_dssp             GST----TGGGGC---EEEEEECCHHHHTTC
T ss_pred             hHH----HHHhCC---eEEEeccchHHHHHH
Confidence            121    123344   479999999999887

>d1j97a_ c.108.1.4 (A:) Phosphoserine phosphatase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphoserine phosphatase
domain: Phosphoserine phosphatase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.89  E-value=7.5e-10  Score=94.90  Aligned_cols=99  Identities=15%  Similarity=0.176  Sum_probs=73.4

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eEEE----------EecCCCCCCCCc
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQMF----------VATQYDRYRKPV  122 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~~~----------~~~~~~~~rKP~  122 (369)
                      +++++.+.+..|..+|+.++++|++.            ...+.......+..  +...          .........+|.
T Consensus        76 ~~~~~~~~i~~l~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  143 (210)
T d1j97a_          76 PTEGAEETIKELKNRGYVVAVVSGGF------------DIAVNKIKEKLGLDYAFANRLIVKDGKLTGDVEGEVLKENAK  143 (210)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEEEEEE------------HHHHHHHHHHHTCSEEEEEEEEEETTEEEEEEECSSCSTTHH
T ss_pred             hhhhHHHHHHHHHHcCCEEEeecccc------------cccccchhhccchhhhhhhhhccccccccccccccccccccc
Confidence            57899999999999999999999842            23344555555553  2111          112234556777


Q ss_pred             hhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc-cCchh
Q psy4598         123 PGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF-FTPEQ  185 (369)
Q Consensus       123 ~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f-~~pe~  185 (369)
                      +......++.+    +++++++++|||+.                +|+.++..+|+.+ +++.+
T Consensus       144 ~~~~~~~~~~~----~~~~~~~i~iGDs~----------------nDi~m~~~ag~~va~na~~  187 (210)
T d1j97a_         144 GEILEKIAKIE----GINLEDTVAVGDGA----------------NDISMFKKAGLKIAFCAKP  187 (210)
T ss_dssp             HHHHHHHHHHH----TCCGGGEEEEESSG----------------GGHHHHHHCSEEEEESCCH
T ss_pred             cchhhhHHHHh----cccccceEEecCCc----------------ChHHHHHHCCCCEEECCCH
Confidence            88888888875    78999999999999                8999999999976 45543

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=98.87  E-value=2.2e-09  Score=89.95  Aligned_cols=90  Identities=17%  Similarity=0.205  Sum_probs=64.2

Q ss_pred             ccccEEEEEEcCCCCcHHHHHHHHhccCC-cEEEeCCcch---------------------hHHHHHHHHHHHHhCCCcE
Q psy4598         269 AALDSVLIMIGSQGSGKSSFVSTYLKPLN-YTTVNRDTLG---------------------SWQKCVSVMKAALDSGLSV  326 (369)
Q Consensus       269 ~~~~~lIll~G~pGSGKSTla~~L~~~~~-~~~i~~D~~~---------------------~~~~~~~~~~~~l~~g~~v  326 (369)
                      .|.+..|+|+|+|||||||+|+.|++.++ ..+++.|.+.                     ....+.......+..+..+
T Consensus         2 ~pk~~~I~i~G~~GsGKTT~~~~La~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   81 (174)
T d1y63a_           2 QPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIEEKDEDRLLDFMEPIMVSRGNH   81 (174)
T ss_dssp             CCSSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHTTCSCC------CCCCCHHHHHHHHHHHHHHHTSSSEE
T ss_pred             CCCCCEEEEEeCCCCCHHHHHHHHHHHhCCCcEEeHHHHHHHHhhhhhHHHhhcccchHHHHHHHHHHHHHhhhhhcccc
Confidence            35667899999999999999999999986 4666655542                     1234455566677778888


Q ss_pred             EEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         327 VVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       327 IiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      ++|......         .+ ......+|||+||.+++.+|.
T Consensus        82 ~~~~~~~~~---------~~-~~~~~~vI~L~~~~e~l~~Rl  113 (174)
T d1y63a_          82 VVDYHSSEL---------FP-ERWFHMVVVLHTSTEVLFERL  113 (174)
T ss_dssp             EEECSCCTT---------SC-GGGCSEEEEEECCHHHHHHHH
T ss_pred             cccHHHHHH---------HH-HhcCceEEEEECCHHHHHHHH
Confidence            888765321         11 122345789999999999884

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=98.87  E-value=3.2e-09  Score=88.91  Aligned_cols=97  Identities=16%  Similarity=0.216  Sum_probs=63.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCc------EEEeCCcchh------------H---HHHHHHHHHHHhCCCcEEEeC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNY------TTVNRDTLGS------------W---QKCVSVMKAALDSGLSVVVDN  330 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~------~~i~~D~~~~------------~---~~~~~~~~~~l~~g~~vIiD~  330 (369)
                      ..+|+|+|+|||||||+|++|++.++.      .+++.|..+.            +   ................+++..
T Consensus         6 g~~I~l~G~~GsGKTTia~~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIAFVATELTRAGAAVIAA   85 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCTTCCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCchhhhhhHHhhhccccccchhHHHHHHHHHHHHHHhhhhhcccceeecc
Confidence            478999999999999999999998743      3344443321            1   111112222333444555555


Q ss_pred             CCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         331 TNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       331 tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      .......+.............+..+++.++.+....|.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (183)
T d1m8pa3          86 PIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSD  123 (183)
T ss_dssp             CCCCCHHHHHHHHHHHHTTSEEEEEEECCCHHHHHHHC
T ss_pred             cchhhhHHHHHHHHhhcccchhhhhhHHHHHHHHHhhh
Confidence            55555666666666777788888999999998887765

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=98.86  E-value=4.1e-09  Score=90.40  Aligned_cols=94  Identities=11%  Similarity=0.163  Sum_probs=67.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhccCCcEEEeCCc-chhH-----------------------HHHHHHHHHHH---hCCCcEE
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRDT-LGSW-----------------------QKCVSVMKAAL---DSGLSVV  327 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~~~~~i~~D~-~~~~-----------------------~~~~~~~~~~l---~~g~~vI  327 (369)
                      |+|.|+|||||||+|+.|++++++.+|+.++ ++..                       +.....+...+   .....+|
T Consensus         6 iil~G~pGSGKsT~a~~La~~~g~~~i~~gdllr~~~~~~~~~g~~~~~~~~~g~~~~~~~v~~~~~~~l~~~~~~~g~i   85 (190)
T d1ak2a1           6 AVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEMVLELIEKNLETPPCKNGFL   85 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSGGGTTCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHhccCcccchhhhhhccCCccccceeeeeehhhhccccccCcee
Confidence            4467999999999999999999999999854 4310                       11122222222   3345699


Q ss_pred             EeCCCCCHHHHHHHHHHHHhcC-CeEEEEEEeCCHHHHHHHc
Q psy4598         328 VDNTNPDKESRHRYIEAAKQHG-VRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       328 iD~tn~~~~~r~~~~~la~~~~-~~v~~v~l~~~~e~~~~Rn  368 (369)
                      +|+...+......+.......+ .....+++++|.+...+|.
T Consensus        86 i~g~pr~~~qa~~l~~~~~~~~~~~~~~~~l~v~~~~~~~r~  127 (190)
T d1ak2a1          86 LDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPDSLLIRRI  127 (190)
T ss_dssp             EESCCCSHHHHHHHHHHHHHHTCCCCEEEEEECCHHHHHHHH
T ss_pred             ecccccchhHHHHHHHHhhhccccccccccccchHHHHHhhh
Confidence            9998888888877776655544 4567888999998887763

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=98.83  E-value=6e-09  Score=88.28  Aligned_cols=93  Identities=11%  Similarity=0.223  Sum_probs=67.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch-hH--------H---------------HHHHHHHHHH---hCCCcEE
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG-SW--------Q---------------KCVSVMKAAL---DSGLSVV  327 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~~~~~i~~D~~~-~~--------~---------------~~~~~~~~~l---~~g~~vI  327 (369)
                      |+|.|+|||||||+|+.|++.+++.+|+.+++- ..        .               .......+.+   .....+|
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~~~~~i~~~~ll~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v   82 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEVTIGIVRERLSKDDCQNGFL   82 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSGGGTTCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCceechhHHHHHhhccCChhhHHHHHHHHcCCeeccchHHHHHHHHhhchhhhcCcc
Confidence            789999999999999999999999999987752 10        0               0111122222   2234689


Q ss_pred             EeCCCCCHHHHHHHHHHHHhcCCe-EEEEEEeCCHHHHHHH
Q psy4598         328 VDNTNPDKESRHRYIEAAKQHGVR-CIAVHMNISKEHAKHN  367 (369)
Q Consensus       328 iD~tn~~~~~r~~~~~la~~~~~~-v~~v~l~~~~e~~~~R  367 (369)
                      +++..........+.......+.. ..+++++++.+.+.+|
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~e~~~~R  123 (182)
T d1zina1          83 LDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMER  123 (182)
T ss_dssp             EESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHH
T ss_pred             cccccchhHHHHHHHHhhhccCCceeeeeccccccchhhhc
Confidence            998887777777777766666554 4788899999998887

>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.82  E-value=5.8e-09  Score=90.71  Aligned_cols=124  Identities=15%  Similarity=0.083  Sum_probs=81.2

Q ss_pred             ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcC-----------------CC--
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIG-----------------RK--   85 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~-----------------~~--   85 (369)
                      .|+++||+||||+.+..            .+.+.+.++|++|+++|++++++|..+--.                 .|  
T Consensus         2 iK~i~~D~DGTL~~~~~------------~i~~~~~~~l~~l~~~gi~v~~~TGR~~~~~~~~~~~~~~~~~~i~~~g~~   69 (230)
T d1wr8a_           2 IKAISIDIDGTITYPNR------------MIHEKALEAIRRAESLGIPIMLVTGNTVQFAEAASILIGTSGPVVAEDGGA   69 (230)
T ss_dssp             CCEEEEESTTTTBCTTS------------CBCHHHHHHHHHHHHTTCCEEEECSSCHHHHHHHHHHHTCCSCEEEGGGTE
T ss_pred             ceEEEEecCCCCcCCCC------------ccCHHHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHhcCCCccccccccee
Confidence            58999999999986532            257889999999999999999999743100                 00  


Q ss_pred             -----------CCCHHH---------------------------------HHHHHHHHHHHcCCCeEEEEecC---CCCC
Q psy4598          86 -----------KMSTRD---------------------------------FQAKAEKIIKSLNVPVQMFVATQ---YDRY  118 (369)
Q Consensus        86 -----------~~~~~~---------------------------------~~~~i~~~l~~l~i~~~~~~~~~---~~~~  118 (369)
                                 ......                                 -.+.+..+++.++..+.......   -...
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iei~~~  149 (230)
T d1wr8a_          70 ISYKKKRIFLASMDEEWILWNEIRKRFPNARTSYTMPDRRAGLVIMRETINVETVREIINELNLNLVAVDSGFAIHVKKP  149 (230)
T ss_dssp             EEETTEEEESCCCSHHHHHHHHHHHHCTTCCBCTTGGGCSSCEEECTTTSCHHHHHHHHHHTTCSCEEEECSSCEEEECT
T ss_pred             eeccccccccccccHHHHHHHHHHHhcccccceeecccceeeEEEecccccHHHHHHHHHHhccceEEeeCCcEEEEeeC
Confidence                       000000                                 00112222333322211111110   0123


Q ss_pred             CCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc
Q psy4598         119 RKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF  180 (369)
Q Consensus       119 rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f  180 (369)
                      ..+++..++.+++++    +++++++++|||..                +|+.++..+|+.+
T Consensus       150 ~~~K~~al~~l~~~~----~i~~~~~~~iGD~~----------------NDi~ml~~ag~~v  191 (230)
T d1wr8a_         150 WINKGSGIEKASEFL----GIKPKEVAHVGDGE----------------NDLDAFKVVGYKV  191 (230)
T ss_dssp             TCCHHHHHHHHHHHH----TSCGGGEEEEECSG----------------GGHHHHHHSSEEE
T ss_pred             CcCcchhhccccccc----ccchhheeeeecCc----------------cHHHHHHHCCeEE
Confidence            567788999999986    78999999999999                8999999999876

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.81  E-value=2.9e-09  Score=90.51  Aligned_cols=91  Identities=11%  Similarity=0.162  Sum_probs=61.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch-h-----------H------------HHHHHHHHHHH---hCCCcEE
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG-S-----------W------------QKCVSVMKAAL---DSGLSVV  327 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~~~~~i~~D~~~-~-----------~------------~~~~~~~~~~l---~~g~~vI  327 (369)
                      |+|.|+|||||||+|+.|++++++.+|+.+++. .           .            ........+.+   .....+|
T Consensus         3 I~i~G~pGSGKsT~~~~La~~~~~~~i~~~~llr~~~~~~~~~~~~i~~~~~~g~~~~d~~v~~~~~~~~~~~~~~~g~i   82 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKSGSELGKQAKDIMDAGKLVTDELVIALVKERIAQEDCRNGFL   82 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCTTTGGGHHHHHHTCCCCHHHHHHHHHHHHTSGGGGGCEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCceechhhHhHHhhccCChHHHHHHHHHHcCCCCcchhHHHHHHHhhccccccccee
Confidence            678999999999999999999999999986652 1           0            01111222222   2234689


Q ss_pred             EeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         328 VDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       328 iD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      +|+...+......+.+   ....+-.++++++|.+++.+|.
T Consensus        83 ~~g~pr~~~~~~~~~~---~~~~~~~vi~L~~~~~~l~~R~  120 (179)
T d1e4va1          83 LDGFPRTIPQADAMKE---AGINVDYVLEFDVPDELIVDRI  120 (179)
T ss_dssp             EESCCCSHHHHHHHHH---TTCCCSEEEEEECCHHHHHHHH
T ss_pred             ecccccchHHhhhhhh---ccCCceEEEEeccchhhhhhhh
Confidence            9998876554443332   2223446899999999998883

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.81  E-value=6.4e-09  Score=89.61  Aligned_cols=93  Identities=14%  Similarity=0.355  Sum_probs=66.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hh-----------------------HHHHHHHHHHHH----hCC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GS-----------------------WQKCVSVMKAAL----DSG  323 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~-----------------------~~~~~~~~~~~l----~~g  323 (369)
                      +++|+|.|||||||||+|+.|++.+++.+|+.+++ +.                       -+.......+.+    ...
T Consensus         8 ~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~g~llr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~   87 (194)
T d3adka_           8 SKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRAEVSSGSARGKMLSEIMEKGQLVPLETVLDMLRDAMVAKVDTS   87 (194)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHTCCEEEEHHHHHHHHHHHTCHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTTTTC
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHhCCeeEeccHHHHHHHHHhHhhhhhhHHHHhhccCCchheeeeehhhhhhhccccc
Confidence            57899999999999999999999999999998765 21                       011122223332    234


Q ss_pred             CcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         324 LSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       324 ~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      ..+|+|+...+..+...+..   ....+..++++.++.++...|
T Consensus        88 ~g~ildg~pr~~~qa~~~~~---~~~~~~~~~~~~~~~~~~~~r  128 (194)
T d3adka_          88 KGFLIDGYPREVKQGEEFER---KIGQPTLLLYVDAGPETMTKR  128 (194)
T ss_dssp             SCEEEESCCSSHHHHHHHHH---HTCCCSEEEEEECCHHHHHHH
T ss_pred             ccceeeeccchhHHHHHHHH---HhCCccchhccccchhhhHhH
Confidence            46999998877666555543   344566788899999888876

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=98.81  E-value=6.4e-09  Score=88.63  Aligned_cols=95  Identities=12%  Similarity=0.216  Sum_probs=68.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc-hhH--------HH---------------HHHHHHHHH---hCCCcE
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL-GSW--------QK---------------CVSVMKAAL---DSGLSV  326 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~-~~~--------~~---------------~~~~~~~~l---~~g~~v  326 (369)
                      -|+|.|+|||||||+|+.|++++++.+|+.+++ +..        ..               ........+   .....+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~~g~~i~~~~~~g~~~~d~~~~~~~~~~~~~~~~~~~~   81 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYGTPHISTGDMFRAAIQEGTELGVKAKSFMDQGALVPDEVTIGIVRERLSKSDCDNGF   81 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHHHHHHHHHHTSSTTSSCE
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCceeeHHHHHHHhhhcCCchHHHHHHHHHcCCcccCcchhHHHHHhhcccccccce
Confidence            378899999999999999999999999998664 210        00               111112222   223468


Q ss_pred             EEeCCCCCHHHHHHHHHHHHhcCC-eEEEEEEeCCHHHHHHHc
Q psy4598         327 VVDNTNPDKESRHRYIEAAKQHGV-RCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       327 IiD~tn~~~~~r~~~~~la~~~~~-~v~~v~l~~~~e~~~~Rn  368 (369)
                      |+|+...+......+.+.....+. ....++++++.+.+..|.
T Consensus        82 vl~g~p~~~~~~~~l~~~~~~~~~~i~~~~~l~~~~e~~~~R~  124 (182)
T d1s3ga1          82 LLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQVEKEELIARL  124 (182)
T ss_dssp             EEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHH
T ss_pred             eeeccccchhHHHHHHHHhhcCCCeeeeccchhhhhhhhhhhh
Confidence            999998888888888776666665 356788899999988873

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.79  E-value=3.5e-09  Score=88.95  Aligned_cols=88  Identities=19%  Similarity=0.186  Sum_probs=54.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch------------------hHHHHHHH-HHHHHhCCCcEEEeCCCCCH
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG------------------SWQKCVSV-MKAALDSGLSVVVDNTNPDK  335 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~~~~~i~~D~~~------------------~~~~~~~~-~~~~l~~g~~vIiD~tn~~~  335 (369)
                      |+|+|+|||||||+++.|++.+++.+++.|.+-                  .++.+... ....+.....+| .......
T Consensus         4 IvliG~~G~GKSTig~~La~~l~~~fiD~D~~ie~~~g~~i~~~~~~~g~~~~r~~e~~~~~~~~~~~~~vi-~~gg~~~   82 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRTGRSIADIFATDGEQEFRRIEEDVVRAALADHDGVL-SLGGGAV   82 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHSSCHHHHHHHHCHHHHHHHHHHHHHHHHHHCCSEE-ECCTTGG
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCeEeeccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhhhccccccccc-ccccccc
Confidence            456699999999999999999999999998751                  12222222 233344444444 4333211


Q ss_pred             HHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         336 ESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       336 ~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      . ......+.. .+   ..||+.++.+++.+|.
T Consensus        83 ~-~~~~~~~l~-~~---~~I~L~~~~~~~~~R~  110 (165)
T d2iyva1          83 T-SPGVRAALA-GH---TVVYLEISAAEGVRRT  110 (165)
T ss_dssp             G-SHHHHHHHT-TS---CEEEEECCHHHHHHHT
T ss_pred             c-ccccccccc-cc---ceeeeeccchhhhhcc
Confidence            1 112222222 22   3589999999999884

>d1qyia_ c.108.1.13 (A:) Hypothetical protein MW1667 (SA1546) {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Hypothetical protein MW1667 (SA1546)
domain: Hypothetical protein MW1667 (SA1546)
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.66  E-value=8.7e-09  Score=98.47  Aligned_cols=101  Identities=19%  Similarity=0.249  Sum_probs=78.0

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC--eE--EEEec-----------CCCCCC
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP--VQ--MFVAT-----------QYDRYR  119 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~--~~--~~~~~-----------~~~~~r  119 (369)
                      ..|++.++|++|+++|++++|+||.+            ......+++.+|+.  |+  .+++.           ......
T Consensus       216 p~~~v~~~l~~lk~aGi~v~i~Tg~~------------~~~a~~il~~lgl~~~F~~~~i~~~~d~~~~~~~~~~~~~~~  283 (380)
T d1qyia_         216 PVDEVKVLLNDLKGAGFELGIATGRP------------YTETVVPFENLGLLPYFEADFIATASDVLEAENMYPQARPLG  283 (380)
T ss_dssp             CHHHHHHHHHHHHHTTCEEEEECSSC------------HHHHHHHHHHHTCGGGSCGGGEECHHHHHHHHHHSTTSCCCC
T ss_pred             chhhHHHHHHHHHHCCCeEEEECCCC------------HHHHHHHHHHcCCcccCCcceEEecchhhhhhhhcccccccc
Confidence            46799999999999999999999953            23456778888872  43  23332           235678


Q ss_pred             CCchhHHHHHHHHhc----------CCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCccCc
Q psy4598         120 KPVPGMWEYLSQEKN----------GDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFFTP  183 (369)
Q Consensus       120 KP~~gm~~~~~~~~~----------~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~~p  183 (369)
                      ||+|.++..++...+          ..+.+++++++||||+.                .|+.+|+++|+.++..
T Consensus       284 KP~p~~~~~~~~~~~~~~~~k~~iv~~~~~~~~~~~~vGD~~----------------~D~~aak~Ag~~~Igv  341 (380)
T d1qyia_         284 KPNPFSYIAALYGNNRDKYESYINKQDNIVNKDDVFIVGDSL----------------ADLLSAQKIGATFIGT  341 (380)
T ss_dssp             TTSTHHHHHHHHCCCGGGHHHHHHCCTTCSCTTTEEEEESSH----------------HHHHHHHHHTCEEEEE
T ss_pred             CCChHHHHHHHHHcCCCHHHHHHHHHHhCCCCCeEEEECCCH----------------HHHHHHHHCCCCEEEE
Confidence            999999999876432          12356788999999999                8999999999988644

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=98.66  E-value=2.9e-08  Score=81.35  Aligned_cols=91  Identities=15%  Similarity=0.194  Sum_probs=56.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh------------------HHHHHHHHHHHHhCCCcEEEeCCCCC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS------------------WQKCVSVMKAALDSGLSVVVDNTNPD  334 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~------------------~~~~~~~~~~~l~~g~~vIiD~tn~~  334 (369)
                      +.|+|+|+|||||||+|+.|++++++.+++.|.+..                  +.............+..+++......
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEGFRDREEKVINELTEKQGIVLATGGGS   82 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTSSSEEEECCTTG
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCeEeechhHHhhhcccccchhhhhhhhHHHHHHHHHHHhhccccceEeeccchh
Confidence            358899999999999999999999999999887631                  11222223333344555555544433


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         335 KESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       335 ~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      .........+.. .   ...+++.++..+...|
T Consensus        83 ~~~~~~~~~l~~-~---~~~~~~~~~~~~~~~r  111 (169)
T d1kaga_          83 VKSRETRNRLSA-R---GVVVYLETTIEKQLAR  111 (169)
T ss_dssp             GGSHHHHHHHHH-H---SEEEECCCCHHHHHSC
T ss_pred             hhhhhhhHHhhh-c---ceeeeccCcHHHhhhH
Confidence            333333333222 2   2467777777766554

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=98.61  E-value=2.1e-08  Score=83.39  Aligned_cols=84  Identities=15%  Similarity=0.214  Sum_probs=53.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcch------------------hHHHHHHHHHHHHhCCCcEEEeCCCCCH
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG------------------SWQKCVSVMKAALDSGLSVVVDNTNPDK  335 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~------------------~~~~~~~~~~~~l~~g~~vIiD~tn~~~  335 (369)
                      .|+|+|+|||||||+|+.|++.+++.+++.|.+.                  ..+.+........... ..+++......
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~   84 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVVDELDNQMREG-GVIVDYHGCDF   84 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHTTCBCCCCSSSSCCCBCHHHHHHHHHHHHHHC-CEEEECSCCTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCcEEechHHHHHhccccchhHHhhhhhHHHHHHHHHhhhhhhcC-CcccchhHHHH
Confidence            4779999999999999999999999999987752                  1223333333333322 34444333211


Q ss_pred             HHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         336 ESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       336 ~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      -          .......++++++|.+++.+|.
T Consensus        85 ~----------~~~~~~~~i~l~~~~~~~~~Rl  107 (173)
T d1rkba_          85 F----------PERWFHIVFVLRTDTNVLYERL  107 (173)
T ss_dssp             S----------CGGGCSEEEEEECCHHHHHHHH
T ss_pred             H----------HHhcCCCcceecCCHHHHHHHH
Confidence            0          0112335788999999888874

>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.49  E-value=9.9e-08  Score=83.39  Aligned_cols=44  Identities=16%  Similarity=0.366  Sum_probs=37.4

Q ss_pred             CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecC
Q psy4598          24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQ   79 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq   79 (369)
                      +.|+++||+||||+.+..            .+.|++.++|++|+++|+.++++|-.
T Consensus         2 miKli~~D~DGTL~~~~~------------~i~~~~~~al~~l~~~g~~v~~~TGr   45 (225)
T d1l6ra_           2 MIRLAAIDVDGNLTDRDR------------LISTKAIESIRSAEKKGLTVSLLSGN   45 (225)
T ss_dssp             CCCEEEEEHHHHSBCTTS------------CBCHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CeEEEEEecCCCCcCCCC------------cCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence            568999999999986531            25789999999999999999999964

>d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Hypothetical protein VC0232
domain: Hypothetical protein VC0232
species: Vibrio cholerae [TaxId: 666]

Probab=98.43  E-value=3.3e-07  Score=73.28  Aligned_cols=80  Identities=20%  Similarity=0.264  Sum_probs=56.1

Q ss_pred             eEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCC-CC--HHHHHHHHHHHHHH
Q psy4598          26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKK-MS--TRDFQAKAEKIIKS  102 (369)
Q Consensus        26 k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~-~~--~~~~~~~i~~~l~~  102 (369)
                      |.++||+||||.....+ .|.    +- .+.+++.+.|..|+++|++|+|+|..+....+. ..  .....+....-|+.
T Consensus         2 K~i~~DiDGTI~~~~~~-~y~----~~-~P~~~~Ie~l~~l~~~G~~Iii~TaR~~~~~~~~~~~~~~~~~~~T~~wL~~   75 (124)
T d1xpja_           2 KKLIVDLDGTLTQANTS-DYR----NV-LPRLDVIEQLREYHQLGFEIVISTARNMRTYEGNVGKINIHTLPIITEWLDK   75 (124)
T ss_dssp             CEEEECSTTTTBCCCCS-CGG----GC-CBCHHHHHHHHHHHHTTCEEEEEECTTTTTTTTCHHHHHHHTHHHHHHHHHH
T ss_pred             CEEEEeCCCCeECCCCC-CcC----cc-CcCHHHHHHHHHHHHCCCEEEEEecCCccccCCcHHHHHHHHHHHHHHHHHH
Confidence            67899999999876543 232    22 368999999999999999999999854322111 00  23344566777899


Q ss_pred             cCCCeEEEE
Q psy4598         103 LNVPVQMFV  111 (369)
Q Consensus       103 l~i~~~~~~  111 (369)
                      .|+|++-++
T Consensus        76 ~gI~Yd~Li   84 (124)
T d1xpja_          76 HQVPYDEIL   84 (124)
T ss_dssp             TTCCCSEEE
T ss_pred             cCCCceEEE
Confidence            999986443

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=98.43  E-value=4.6e-08  Score=82.09  Aligned_cols=95  Identities=15%  Similarity=0.141  Sum_probs=55.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch-------------------------hHHHHHHHHHHHHhC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG-------------------------SWQKCVSVMKAALDS  322 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~-------------------------~~~~~~~~~~~~l~~  322 (369)
                      ++|+|.|+|||||||+++.|++.+     +...++.++..                         ............+..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPETQKRIQKMAGRKIAEMAK   81 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHHHTTSCSSGGGGSSCCHHHHHHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEecCChhHHHHHHHHhhhhhhhhhhhhchhhHHHHHHHHHHHHHHhC
Confidence            589999999999999999998864     44555543321                         011111222334566


Q ss_pred             CCcEEEeCCCCCHHHHH---HHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         323 GLSVVVDNTNPDKESRH---RYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       323 g~~vIiD~tn~~~~~r~---~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      +..+++|..........   .+.........+..+++++++++++.+|
T Consensus        82 ~~~vl~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~R  129 (190)
T d1khta_          82 ESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTGDEILMR  129 (190)
T ss_dssp             TSCEEEECCSEEEETTEEEESSCHHHHHHHCCSEEEEEECCHHHHHHH
T ss_pred             CCeEEECCcccchHHHHHHHhhhhhhhhhccccceeeecCCHHHHHHH
Confidence            77888887543211100   0000111112345689999999988776

>d2b82a1 c.108.1.12 (A:4-212) Class B acid phosphatase, AphA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Class B acid phosphatase, AphA
domain: Class B acid phosphatase, AphA
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=2.4e-07  Score=80.56  Aligned_cols=119  Identities=13%  Similarity=0.214  Sum_probs=79.3

Q ss_pred             eEEEEecCCceeecCC------------CCCCCCCcccccc----------ccccHHHHHHHHHHCCcEEEEEecCCCcC
Q psy4598          26 KIASFDLDGTLITTKS------------GKVFPVDTHDWKL----------LFSNIESVLKQYLDDGYKLVIFTNQGAIG   83 (369)
Q Consensus        26 k~~~fDlDgTLi~~~s------------g~~~~~~~~d~~~----------~~p~v~~~L~~L~~~G~~i~i~TNq~gi~   83 (369)
                      .+++||+|-|++.+.+            +..|..++..|.+          ..||+.+.|+.+.++|++|+.+||...-.
T Consensus        36 ~AIifDIDETvLdnspy~~~~~~~~~~~~~~y~~~~~~W~~~~~~~~~~A~p~pga~~fl~~~~~~Gv~IfyVTnR~~~~  115 (209)
T d2b82a1          36 MAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFWEKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGRSPTK  115 (209)
T ss_dssp             CEEEECCBTTTEECHHHHHHHHHHHCTTSSGGGGCHHHHHHHHTTGGGGCEECHHHHHHHHHHHHHTCEEEEEECSCCCS
T ss_pred             ceEEEcchhhhhcCcHHHHhhhhhcCcCcccccCCCcchHHHhcccccccCcchhHHHHHHHHHHcCCeEEEEeCCchhh
Confidence            4788999999998642            3345566666643          35799999999999999999999954321


Q ss_pred             CCCCCHHHHHHHHHHHHHHcCCCe----EEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCC
Q psy4598          84 RKKMSTRDFQAKAEKIIKSLNVPV----QMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAP  159 (369)
Q Consensus        84 ~~~~~~~~~~~~i~~~l~~l~i~~----~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~  159 (369)
                      +.        .-++.+.+.+|+|+    .+++....  ..|..   =...++++    +|    .+|+||..        
T Consensus       116 ~e--------~T~~nL~K~lG~p~~~~~~vll~~~~--~~K~~---rr~~Ik~y----~I----~l~~GD~l--------  166 (209)
T d2b82a1         116 TE--------TVSKTLADNFHIPATNMNPVIFAGDK--PGQNT---KSQWLQDK----NI----RIFYGDSD--------  166 (209)
T ss_dssp             SC--------CHHHHHHHHTTCCTTTBCCCEECCCC--TTCCC---SHHHHHHT----TE----EEEEESSH--------
T ss_pred             HH--------HHHHHHHHHcCCCcccccceEeeCCC--CCchH---HHHHHHHc----Ce----EEEecCCH--------
Confidence            11        11233335689874    24454432  12221   12222444    34    67999999        


Q ss_pred             CCCCCCCcccHHHHHhCCCCcc
Q psy4598         160 KKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       160 ~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                              +|+.+|.++|++.+
T Consensus       167 --------~Df~aA~eagi~~i  180 (209)
T d2b82a1         167 --------NDITAARDVGARGI  180 (209)
T ss_dssp             --------HHHHHHHHTTCEEE
T ss_pred             --------HHHhHHHHcCCCce
Confidence                    89999999999874

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=98.30  E-value=2e-07  Score=77.72  Aligned_cols=39  Identities=21%  Similarity=0.282  Sum_probs=34.8

Q ss_pred             cccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         268 KAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       268 ~~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      ++.+++.|++.|+|||||||+|++|++.++..+++.+..
T Consensus         3 ~~~~~K~I~i~G~~GsGKTTla~~La~~~~~~~i~~~~~   41 (192)
T d1lw7a2           3 RPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGR   41 (192)
T ss_dssp             GGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTH
T ss_pred             CCccceEEEEECCCCCCHHHHHHHHHHHhCCCeEeeehH
Confidence            456778999999999999999999999999999987763

>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YwpJ
species: Bacillus subtilis [TaxId: 1423]

Probab=98.20  E-value=3.1e-06  Score=75.67  Aligned_cols=41  Identities=37%  Similarity=0.555  Sum_probs=35.3

Q ss_pred             eEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEec
Q psy4598          26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTN   78 (369)
Q Consensus        26 k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TN   78 (369)
                      |+++||+||||+....           . +-|.+.++|++|+++|++++++|.
T Consensus         2 Kli~~DlDGTLl~~~~-----------~-i~~~~~~~l~~l~~~Gi~~~i~TG   42 (285)
T d1nrwa_           2 KLIAIDLDGTLLNSKH-----------Q-VSLENENALRQAQRDGIEVVVSTG   42 (285)
T ss_dssp             CEEEEECCCCCSCTTS-----------C-CCHHHHHHHHHHHHTTCEEEEECS
T ss_pred             eEEEEECCccccCCCC-----------c-cCHHHHHHHHHHHHCCCEEEEECC
Confidence            7899999999996431           1 467899999999999999999996

>d2obba1 c.108.1.25 (A:1-122) Hypothetical protein BT0820 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: BT0820-like
domain: Hypothetical protein BT0820
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.16  E-value=1.5e-06  Score=69.30  Aligned_cols=67  Identities=13%  Similarity=0.199  Sum_probs=49.6

Q ss_pred             EEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCC
Q psy4598          27 IASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVP  106 (369)
Q Consensus        27 ~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~  106 (369)
                      .++||+||||.....    ..    ....+|++.+.|++|+++|+.|+|+|..+         .........-|++.|+|
T Consensus         2 ti~vDiDGTl~~~~~----~~----~~kPi~~~Ie~l~~L~~~G~~IIi~TaR~---------~~~~~~t~~wL~~~~i~   64 (122)
T d2obba1           2 TIAVDFDGTIVEHRY----PR----IGEEIPFAVETLKLLQQEKHRLILWSVRE---------GELLDEAIEWCRARGLE   64 (122)
T ss_dssp             EEEECCBTTTBCSCT----TS----CCCBCTTHHHHHHHHHHTTCEEEECCSCC---------HHHHHHHHHHHHTTTCC
T ss_pred             EEEEEcCCCcCCCCC----Cc----cccccHHHHHHHHHHHHCCCeEEEEecCC---------CcchHHHHHHHHHcCCC
Confidence            368999999986432    11    12268999999999999999999999732         23444556678888998


Q ss_pred             eEEE
Q psy4598         107 VQMF  110 (369)
Q Consensus       107 ~~~~  110 (369)
                      ++.+
T Consensus        65 yd~i   68 (122)
T d2obba1          65 FYAA   68 (122)
T ss_dssp             CSEE
T ss_pred             ceeh
Confidence            7643

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.15  E-value=1.2e-06  Score=73.90  Aligned_cols=50  Identities=44%  Similarity=0.819  Sum_probs=43.7

Q ss_pred             CCCCCCceEEEEEcCCCCCcchhhhhccCCCcccccccccccchhhhhhh
Q psy4598         217 NIPHDKKQVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSV  266 (369)
Q Consensus       217 ~~~~~~~~i~v~~g~~~~gks~~~~~~~~~~~~~~i~r~~~~~~~~~~~~  266 (369)
                      ......+.++|++|+||||||||+++++...++..||.|.+..+..|...
T Consensus         8 ~~~~~~p~liil~G~pGsGKST~a~~l~~~~~~~~i~~D~~~~~~~~~~~   57 (172)
T d1yj5a2           8 SLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSS   57 (172)
T ss_dssp             CSSCSSCCEEEEECCTTSSHHHHHHHHTGGGTCEEEEHHHHCSHHHHHHH
T ss_pred             ccCCCCCEEEEEECCCCCCHHHHHHHHHHhcCCEEEchHHHHHHHHHHHH
Confidence            34567788999999999999999999988889999999999998877543

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=98.15  E-value=7.5e-06  Score=70.57  Aligned_cols=96  Identities=20%  Similarity=0.238  Sum_probs=60.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC---C--cEEEeC---Cc-----ch--------------------------hHHHHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL---N--YTTVNR---DT-----LG--------------------------SWQKCV  313 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~---~--~~~i~~---D~-----~~--------------------------~~~~~~  313 (369)
                      ++|++-|++||||||+++.|++.+   +  .+++..   +.     ++                          .+....
T Consensus         3 kfIviEG~dGsGKsT~~~~L~~~L~~~g~~~~~~~~ep~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~   82 (210)
T d4tmka_           3 KYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITDKAEVLMFYAARVQLVE   82 (210)
T ss_dssp             CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEecCCCCccchhhhHHHHhccccccccccchHHHHHHHHHHHHHHHH
Confidence            589999999999999999998864   2  233321   10     00                          011122


Q ss_pred             HHHHHHHhCCCcEEEeCCC------------CCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         314 SVMKAALDSGLSVVVDNTN------------PDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       314 ~~~~~~l~~g~~vIiD~tn------------~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      .....++..|..||.|-..            ........+...+...-.+-.++++++|++++.+|-
T Consensus        83 ~~i~~~l~~~~~vi~DRy~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~pdl~i~Ld~~~e~~~~Ri  149 (210)
T d4tmka_          83 TVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRA  149 (210)
T ss_dssp             HTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHH
T ss_pred             HHHHHHHHcCCcccccchhhhhhhhhccccccchhHHHHHHHHhhcCCCCceEEEecchHHHHHHHh
Confidence            3346677889889988432            223333333334333344667999999999999983

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=4.5e-07  Score=78.48  Aligned_cols=37  Identities=16%  Similarity=0.413  Sum_probs=32.7

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeC-Ccch
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNR-DTLG  307 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~-D~~~  307 (369)
                      ++++|.+.|||||||||+|+.|++++++.|||+ |.+|
T Consensus         2 ~~piI~I~GppGSGKgT~ak~La~~~gl~~iStGdLlR   39 (225)
T d1ckea_           2 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR   39 (225)
T ss_dssp             CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHhCCcEECHHHHHH
Confidence            556899999999999999999999999999985 4444

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.08  E-value=5.6e-06  Score=69.80  Aligned_cols=89  Identities=13%  Similarity=0.128  Sum_probs=55.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcE-----EEe-----------------CCcchh-------------------HHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYT-----TVN-----------------RDTLGS-------------------WQK  311 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~-----~i~-----------------~D~~~~-------------------~~~  311 (369)
                      ++|+|+|||||||||+++.|.+.+.-.     +.+                 .+.+..                   |..
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~tTR~~r~~e~~G~dy~fvs~~~f~~~~~~~~f~e~~~~~~~~~~~g~   82 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGT   82 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCCCCeEEEEeeccCCCccccCCcceeeccchhhhhhhcccccchhhhcccCcccccc
Confidence            589999999999999999998765211     111                 111110                   011


Q ss_pred             HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         312 CVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       312 ~~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      ....+...+..|..+++|..-   ..   +..+-......+.++.+.+|.|+..+|
T Consensus        83 ~~~~~~~~~~~g~~~i~~~~~---~g---~~~l~~~~~~~~~i~i~~~s~e~L~~R  132 (182)
T d1znwa1          83 LAQPVRAAAATGVPVLIEVDL---AG---ARAIKKTMPEAVTVFLAPPSWQDLQAR  132 (182)
T ss_dssp             EHHHHHHHHHHTCCEEEECCH---HH---HHHHHHHCTTSEEEEEECSCHHHHHHH
T ss_pred             ccchhhhhhhcCCcccccccc---ch---hhhhhhcCcceeEEeeecccHHHHHHH
Confidence            234566677888889888543   22   223333445566667777888887766

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=98.08  E-value=6.6e-07  Score=75.08  Aligned_cols=25  Identities=28%  Similarity=0.361  Sum_probs=22.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      +++|++.|+|||||||+++.|++.+
T Consensus         1 mkiivi~G~~GsGKTT~~~~La~~L   25 (194)
T d1nksa_           1 MKIGIVTGIPGVGKSTVLAKVKEIL   25 (194)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            4789999999999999999999875

>d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax [TaxId: 5855]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: PFL1270w orthologue
species: Plasmodium vivax [TaxId: 5855]

Probab=98.08  E-value=7e-06  Score=72.89  Aligned_cols=47  Identities=28%  Similarity=0.393  Sum_probs=38.3

Q ss_pred             CCceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCC
Q psy4598          23 NSAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQG   80 (369)
Q Consensus        23 ~~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~   80 (369)
                      ...|+++||+||||+....+           .+.|.+.++|++|+++|.+++|+|-.+
T Consensus         8 ~~ikli~~DlDGTLl~~~~~-----------~i~~~~~~al~~l~~~Gi~v~i~TGR~   54 (283)
T d2b30a1           8 ADIKLLLIDFDGTLFVDKDI-----------KVPSENIDAIKEAIEKGYMVSICTGRS   54 (283)
T ss_dssp             CCCCEEEEETBTTTBCCTTT-----------CSCHHHHHHHHHHHHHTCEEEEECSSC
T ss_pred             cCccEEEEECCCCCcCCCCC-----------cCCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            35689999999999843321           157889999999999999999999754

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=9.2e-06  Score=70.04  Aligned_cols=35  Identities=23%  Similarity=0.354  Sum_probs=29.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCC----------cEEEeCCcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLN----------YTTVNRDTL  306 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~----------~~~i~~D~~  306 (369)
                      |-+|-++|++||||||+|+.|++.++          +.+|+.|.+
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~~~~~~~vi~~D~y   46 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSF   46 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhchhccccCCCceEEEecccc
Confidence            56788999999999999999988753          567888875

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=98.02  E-value=3e-06  Score=71.97  Aligned_cols=34  Identities=26%  Similarity=0.448  Sum_probs=30.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      |.+|-++|++||||||+|+.|. .+|+.++++|.+
T Consensus         3 p~IIgitG~~gSGKstva~~l~-~~g~~~~~~D~~   36 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLR-SWGYPVLDLDAL   36 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH-HTTCCEEEHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH-HCCCeEEEccHH
Confidence            6788899999999999999995 578999999886

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=4e-06  Score=72.83  Aligned_cols=96  Identities=16%  Similarity=0.213  Sum_probs=57.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC---C--cEEEe-C--Cc-c----hh----------------H----HHHHHHHHHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL---N--YTTVN-R--DT-L----GS----------------W----QKCVSVMKAA  319 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~---~--~~~i~-~--D~-~----~~----------------~----~~~~~~~~~~  319 (369)
                      .+|++.|+.||||||+++.|.+.+   +  +.++. .  +. +    +.                +    ......+..+
T Consensus         4 ~lI~ieG~dGsGKsT~~~~L~~~L~~~g~~v~~~~~p~~~~~~~~~i~~~l~~~~~~~~~~~~~l~~~~r~~~~~~i~~~   83 (209)
T d1nn5a_           4 ALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLRFPERSTEIGKLLSSYLQKKSDVEDHSVHLLFSANRWEQVPLIKEK   83 (209)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCTTSHHHHHHHHHHTTSSCCCHHHHHHHHHHHHHTTHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCCCcccchhhhhhhhcccccchhhhhhHHHHHHHHHHHhHHHH
Confidence            589999999999999999998864   3  33332 1  11 1    00                0    0112455677


Q ss_pred             HhCCCcEEEeCCCCCHHHH---------HHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         320 LDSGLSVVVDNTNPDKESR---------HRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       320 l~~g~~vIiD~tn~~~~~r---------~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      +..|..||+|-...+.-..         ..+..+....-.|=.++++++|++++.+|.
T Consensus        84 l~~g~~VI~DRy~~s~~ay~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~e~~~~R~  141 (209)
T d1nn5a_          84 LSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGLPKPDLVLFLQLQLADAAKRG  141 (209)
T ss_dssp             HHTTCEEEEESCHHHHHHHHHTSTTCCHHHHHGGGTTSBCCSEEEEEECCHHHHHHC-
T ss_pred             hhcccceeecchhhhhhhhhhhccCccHHHHHHHhccCCCCceeeeecccHHHHhhhh
Confidence            8899999999653211111         111111111223457899999999999884

>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sugar phosphatase SupH (YbiV)
species: Escherichia coli [TaxId: 562]

Probab=97.95  E-value=6.4e-06  Score=73.07  Aligned_cols=43  Identities=19%  Similarity=0.319  Sum_probs=35.3

Q ss_pred             ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEec
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTN   78 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TN   78 (369)
                      .|+++||+||||+.+..           ....|.+.++|++|+++|+.++++|.
T Consensus         2 IKli~~DlDGTLl~~~~-----------~~~~~~~~~~l~~l~~~gi~~~i~TG   44 (269)
T d1rlma_           2 VKVIVTDMDGTFLNDAK-----------TYNQPRFMAQYQELKKRGIKFVVASG   44 (269)
T ss_dssp             CCEEEECCCCCCSCTTS-----------CCCHHHHHHHHHHHHHHTCEEEEECS
T ss_pred             EEEEEEeCCccCcCCCC-----------cCChHHHHHHHHHHHHCCCEEEEEcC
Confidence            47899999999986432           11357899999999999999999996

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=97.95  E-value=6.7e-06  Score=70.88  Aligned_cols=35  Identities=23%  Similarity=0.454  Sum_probs=30.4

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      |..+|-++|.+||||||+++.|. .+|+.++++|.+
T Consensus         1 M~~iIgITG~igSGKStv~~~l~-~~G~~vidaD~i   35 (205)
T d1jjva_           1 MTYIVGLTGGIGSGKTTIANLFT-DLGVPLVDADVV   35 (205)
T ss_dssp             CCEEEEEECSTTSCHHHHHHHHH-TTTCCEEEHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHH-HCCCeEEEchHH
Confidence            44677799999999999999886 579999999986

>d1wzca1 c.108.1.10 (A:1-243) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.94  E-value=1e-05  Score=70.09  Aligned_cols=42  Identities=17%  Similarity=0.343  Sum_probs=33.7

Q ss_pred             CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecC
Q psy4598          24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQ   79 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq   79 (369)
                      +.|++++|+||||+...              -.+...++|++|+++|++++++|-.
T Consensus         1 miKli~~DlDGTLl~~~--------------~~~~~~~ai~~l~~~G~~~~~aTGR   42 (243)
T d1wzca1           1 MIRLIFLDIDKTLIPGY--------------EPDPAKPIIEELKDMGFEIIFNSSK   42 (243)
T ss_dssp             CEEEEEECCBTTTBSSS--------------CSGGGHHHHHHHHHTTEEEEEECSS
T ss_pred             CcEEEEEeCCCCCCCCC--------------CCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            35899999999998431              1245679999999999999999963

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.93  E-value=1.6e-05  Score=68.72  Aligned_cols=89  Identities=19%  Similarity=0.254  Sum_probs=55.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCC---cE---------------------EEeCCcchh-----------------HHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLN---YT---------------------TVNRDTLGS-----------------WQK  311 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~---~~---------------------~i~~D~~~~-----------------~~~  311 (369)
                      ++|+|+||+||||||+.+.|.+..+   ..                     +++.+.+..                 |-.
T Consensus         3 ~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~~g~flE~~~~~g~~YGt   82 (205)
T d1s96a_           3 TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYYGT   82 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccccccccceeecHHHHHHHhhhhhheeEEEECCceecc
Confidence            5899999999999999999987642   11                     111111110                 111


Q ss_pred             HHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         312 CVSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       312 ~~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      ....+...+..|+.+|+|-.   ...-..+.   +.....+.++++.++.++..+|
T Consensus        83 ~~~~v~~~~~~g~~~ildid---~~g~~~lk---~~~~~~~~ifi~pps~~~l~~R  132 (205)
T d1s96a_          83 SREAIEQVLATGVDVFLDID---WQGAQQIR---QKMPHARSIFILPPSKIELDRR  132 (205)
T ss_dssp             EHHHHHHHHTTTCEEEEECC---HHHHHHHH---HHCTTCEEEEEECSSHHHHHHH
T ss_pred             ccchHHHHHhcCCceeecCc---HHHHHHHH---hhhcccceeeeeccchHHHHHH
Confidence            24667888899999999943   33333333   3344456666677777776655

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=97.89  E-value=1.6e-05  Score=69.12  Aligned_cols=40  Identities=20%  Similarity=0.298  Sum_probs=33.4

Q ss_pred             cccccEEEEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCCcch
Q psy4598         268 KAALDSVLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRDTLG  307 (369)
Q Consensus       268 ~~~~~~lIll~G~pGSGKSTla~~L~~~-----~~~~~i~~D~~~  307 (369)
                      .+..|.+|+|+||+|+||||...+|+.+     ..+.+|+.|.+|
T Consensus         7 ~~~~p~vi~lvGptGvGKTTTiAKLAa~~~~~~~kV~lit~Dt~R   51 (213)
T d1vmaa2           7 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR   51 (213)
T ss_dssp             CSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEeecccc
Confidence            3556889999999999999988888764     367899999986

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.88  E-value=5.7e-05  Score=65.29  Aligned_cols=87  Identities=18%  Similarity=0.201  Sum_probs=56.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchh--------HHH-----------------HHHHH--HHH
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGS--------WQK-----------------CVSVM--KAA  319 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~--------~~~-----------------~~~~~--~~~  319 (369)
                      +.+|+|+||+|+||||.+.+|+..+     ...+++.|.+|.        |.+                 ....+  ...
T Consensus        10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~   89 (207)
T d1ls1a2          10 RNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKAR   89 (207)
T ss_dssp             SEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccchHHHHHHHHHHhcCCccccccccchhhHHHHHHHHHHh
Confidence            4789999999999999999998653     678999999862        111                 11111  112


Q ss_pred             HhCCCcEEEeCCCC---CHHHHHHHHHHHHhcCCeEEEEEEe
Q psy4598         320 LDSGLSVVVDNTNP---DKESRHRYIEAAKQHGVRCIAVHMN  358 (369)
Q Consensus       320 l~~g~~vIiD~tn~---~~~~r~~~~~la~~~~~~v~~v~l~  358 (369)
                      .+....|+||....   +.....++.++.+..+..-.++.++
T Consensus        90 ~~~~d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~  131 (207)
T d1ls1a2          90 LEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD  131 (207)
T ss_dssp             HHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred             hccCcceeecccccchhhhhhHHHHHHHHhhcCCceEEEEec
Confidence            34455788898764   4455566666666555544455554

>d1k1ea_ c.108.1.5 (A:) Probable phosphatase YrbI {Haemophilus influenzae, HI1679 [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Probable phosphatase YrbI
domain: Probable phosphatase YrbI
species: Haemophilus influenzae, HI1679 [TaxId: 727]

Probab=97.86  E-value=1.7e-05  Score=67.04  Aligned_cols=117  Identities=16%  Similarity=0.226  Sum_probs=79.4

Q ss_pred             CCceEEEEecCCceeecCCCCCC-CCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHH
Q psy4598          23 NSAKIASFDLDGTLITTKSGKVF-PVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIK  101 (369)
Q Consensus        23 ~~~k~~~fDlDgTLi~~~sg~~~-~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~  101 (369)
                      ...|.++||.||+|.+   |..| ..+...++.+...=...|..|+..|+.++++|-..        ..    .+.....
T Consensus         3 ~~ik~~i~DvDGVlTD---G~v~~~~dG~e~k~F~~~Dg~gi~~l~~~gi~~~iis~~~--------~~----~v~~~~~   67 (177)
T d1k1ea_           3 ENIKFVITDVDGVLTD---GQLHYDANGEAIKSFHVRDGLGIKMLMDADIQVAVLSGRD--------SP----ILRRRIA   67 (177)
T ss_dssp             GGCCEEEEECTTTTSC---SEEEEETTEEEEEEEEHHHHHHHHHHHHTTCEEEEEESCC--------CH----HHHHHHH
T ss_pred             ccCeEEEEccCCcccC---CeEEEeCCCCEEEEEECcchHHHHHHhhhcEEEEEecCCc--------hh----HHHHHHh
Confidence            3468999999999963   3333 33333333333222347889999999999999632        11    2333445


Q ss_pred             HcCCCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         102 SLNVPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       102 ~l~i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      .+++.. ++.      ..++....++.+++++    ++++++++||||..                .|+..-..+|+.+.
T Consensus        68 ~l~~~~-~~~------~~~~K~~~l~~~~~~~----~i~~~~v~~vGDd~----------------nDl~~l~~~g~sia  120 (177)
T d1k1ea_          68 DLGIKL-FFL------GKLEKETACFDLMKQA----GVTAEQTAYIGDDS----------------VDLPAFAACGTSFA  120 (177)
T ss_dssp             HHTCCE-EEE------SCSCHHHHHHHHHHHH----TCCGGGEEEEECSG----------------GGHHHHHHSSEEEE
T ss_pred             hhcccc-ccc------ccccHHHHHHHHHHHh----cCCcceeEEecCCc----------------cHHHHHhhCCeEEE
Confidence            565432 222      2345566778888876    79999999999999                89999999998764

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.86  E-value=3.2e-06  Score=73.24  Aligned_cols=32  Identities=22%  Similarity=0.366  Sum_probs=28.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEEeCCc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDT  305 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~  305 (369)
                      +|.+.|||||||||+|+.|++.+++.|||+-+
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg~~~istGd   36 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFGFTYLDTGA   36 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEECHHH
Confidence            56677999999999999999999999999644

>d1rkua_ c.108.1.11 (A:) Homoserine kinase ThrH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Homoserine kinase ThrH
domain: Homoserine kinase ThrH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.84  E-value=1.5e-05  Score=66.89  Aligned_cols=97  Identities=11%  Similarity=0.145  Sum_probs=59.6

Q ss_pred             cccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCeE---EEEecCC---CCCCCCchhHHHHH
Q psy4598          56 FSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPVQ---MFVATQY---DRYRKPVPGMWEYL  129 (369)
Q Consensus        56 ~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~~---~~~~~~~---~~~rKP~~gm~~~~  129 (369)
                      +++....+..+ ..++.++++|.  |          +..........+++...   .+.....   .....+.+......
T Consensus        71 ~~~~~~~~~~~-~~~~~~~~~s~--~----------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  137 (206)
T d1rkua_          71 LEGAVEFVDWL-RERFQVVILSD--T----------FYEFSQPLMRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQS  137 (206)
T ss_dssp             CTTHHHHHHHH-HTTSEEEEEEE--E----------EHHHHHHHHHHTTCCCEEEEEEEECTTSCEEEEECCSSSHHHHH
T ss_pred             cchHHHHHHHh-hcCceEEEecc--C----------chHHHHHHHHHhCCchhhcceeeeecccccccccccchhhHHHH
Confidence            46666655554 57888888886  1          23344455556655321   1111111   11123344455566


Q ss_pred             HHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc-cCchh
Q psy4598         130 SQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF-FTPEQ  185 (369)
Q Consensus       130 ~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f-~~pe~  185 (369)
                      ++.+    +++++++++|||..                +|+.+...+|+.. +.+.+
T Consensus       138 ~~~~----~i~~~eviaiGDg~----------------NDi~Ml~~Ag~gIAmna~~  174 (206)
T d1rkua_         138 VIAF----KSLYYRVIAAGDSY----------------NDTTMLSEAHAGILFHAPE  174 (206)
T ss_dssp             HHHH----HHTTCEEEEEECSS----------------TTHHHHHHSSEEEEESCCH
T ss_pred             HHHh----cccccceEEecCCc----------------cCHHHHHhCCccEEECCCH
Confidence            6665    78999999999999                8999999999775 35533

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.83  E-value=2.8e-05  Score=67.47  Aligned_cols=39  Identities=21%  Similarity=0.360  Sum_probs=32.8

Q ss_pred             ccccEEEEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCCcch
Q psy4598         269 AALDSVLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRDTLG  307 (369)
Q Consensus       269 ~~~~~lIll~G~pGSGKSTla~~L~~~-----~~~~~i~~D~~~  307 (369)
                      ...|.+|+|+||+|+||||...+|+..     ..+.+|+.|.+|
T Consensus         6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R   49 (211)
T d2qy9a2           6 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR   49 (211)
T ss_dssp             SCTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTC
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeccccc
Confidence            345789999999999999988888854     367899999986

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.82  E-value=3.6e-05  Score=66.76  Aligned_cols=37  Identities=22%  Similarity=0.354  Sum_probs=27.8

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG  307 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~  307 (369)
                      .|.+|+|+||+|+||||...+|+..+     ...+|+.|.+|
T Consensus        11 ~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R   52 (211)
T d1j8yf2          11 IPYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYR   52 (211)
T ss_dssp             SSEEEEEECSCCC----HHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCceEEEEeeccc
Confidence            47899999999999999888887653     67899999986

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.81  E-value=2.6e-05  Score=66.34  Aligned_cols=22  Identities=23%  Similarity=0.597  Sum_probs=20.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhccC
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~  296 (369)
                      |+|+|||||||||+++.|++.+
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            7899999999999999998764

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.80  E-value=2.2e-05  Score=66.51  Aligned_cols=88  Identities=17%  Similarity=0.243  Sum_probs=52.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCC------cEEE-----------------eCCcchh-----------------HHHHH
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLN------YTTV-----------------NRDTLGS-----------------WQKCV  313 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~------~~~i-----------------~~D~~~~-----------------~~~~~  313 (369)
                      .|+|+|||||||||+++.|.+.++      ..+.                 +.+.+..                 |....
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~f~e~~~~~g~~Yg~~~   82 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGSTV   82 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEEEEH
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCcCCccceeccHHHHHHHHhcccceeeeEEccceeecch
Confidence            389999999999999999987642      1111                 1111110                 11124


Q ss_pred             HHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCC-eEEEEEEeCCHHHHHHH
Q psy4598         314 SVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGV-RCIAVHMNISKEHAKHN  367 (369)
Q Consensus       314 ~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~-~v~~v~l~~~~e~~~~R  367 (369)
                      ..+...+..|..+|+|..   ...   +..+-+..+. .+.++++..+.++..+|
T Consensus        83 ~~i~~~~~~g~~~i~~~~---~~~---~~~lk~~~~~~~~~i~~~~~~~e~l~~R  131 (186)
T d1gkya_          83 ASVKQVSKSGKTCILDID---MQG---VKSVKAIPELNARFLFIAPPSVEDLKKR  131 (186)
T ss_dssp             HHHHHHHHHTSEEEEECC---HHH---HHHHHTCGGGCCEEEEEECSCHHHHHHH
T ss_pred             hhHHHHhcCCCeEEecch---HHH---HHHHHHhhcccceEEEecCCcHHHHHHH
Confidence            556677788988888844   222   2222222233 45566777888887776

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=2.6e-05  Score=65.75  Aligned_cols=26  Identities=19%  Similarity=0.537  Sum_probs=23.0

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      |.++|+|+||+||||||+.++|.+..
T Consensus         2 m~k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           2 MRKTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHhC
Confidence            66789999999999999999998653

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.71  E-value=7.8e-05  Score=62.89  Aligned_cols=36  Identities=19%  Similarity=0.322  Sum_probs=29.9

Q ss_pred             ccccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEe
Q psy4598         267 MKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVN  302 (369)
Q Consensus       267 ~~~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~  302 (369)
                      ++...|.+|++.|+.||||||+++.|++.++...+.
T Consensus         4 ~~~~kp~~I~ieG~~GsGKTTl~~~L~~~l~~~~~~   39 (197)
T d2vp4a1           4 AEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLL   39 (197)
T ss_dssp             TTTCCCEEEEEECSTTSCHHHHHHTTGGGTTTEEEE
T ss_pred             cCCCCceEEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence            344567899999999999999999999998755543

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.70  E-value=4.3e-05  Score=66.09  Aligned_cols=38  Identities=18%  Similarity=0.322  Sum_probs=31.7

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcch
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLG  307 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~  307 (369)
                      +.+.+|+|+||+||||||...+|+..+     ...+|+.|.+|
T Consensus         4 ~~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt~R   46 (207)
T d1okkd2           4 PKGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFR   46 (207)
T ss_dssp             CSSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSS
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEecccc
Confidence            456899999999999999888887643     57899999986

>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YidA
species: Escherichia coli [TaxId: 562]

Probab=97.64  E-value=2.5e-05  Score=69.02  Aligned_cols=43  Identities=21%  Similarity=0.397  Sum_probs=36.6

Q ss_pred             CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEec
Q psy4598          24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTN   78 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TN   78 (369)
                      +.|+++||+||||+....            .+.|.+.++|++|+++|++++|+|-
T Consensus         3 ~iKli~~DlDGTL~~~~~------------~i~~~~~~al~~L~~~gi~v~i~TG   45 (271)
T d1rkqa_           3 AIKLIAIDMDGTLLLPDH------------TISPAVKNAIAAARARGVNVVLTTG   45 (271)
T ss_dssp             CCCEEEECCCCCCSCTTS------------CCCHHHHHHHHHHHHTTCEEEEECS
T ss_pred             CeeEEEEeCCccccCCCC------------ccCHHHHHHHHHHHHCCCEEEEECC
Confidence            468999999999985431            1568899999999999999999996

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=97.61  E-value=2.3e-05  Score=68.62  Aligned_cols=71  Identities=13%  Similarity=0.301  Sum_probs=46.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCC--cEEEeCCcchhHHHHHHHHHHHHhCCCcEEEeCCCC-CHHHHHHHHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLN--YTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTNP-DKESRHRYIE  343 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~--~~~i~~D~~~~~~~~~~~~~~~l~~g~~vIiD~tn~-~~~~r~~~~~  343 (369)
                      .-++|.||||+||||+|+.+++.++  ...++.-...............+..+..+++|.... .+.....++.
T Consensus        36 ~~~Ll~GPpG~GKTtla~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDe~~~~~~~~~~~l~~  109 (239)
T d1ixsb2          36 EHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYP  109 (239)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHTTCCTTCEEEEETGGGCCHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhCCCeEeccCCccccchhhHHHHHhhccCCCeeeeecccccchhHHHhhhh
Confidence            4578999999999999999999865  455565555444444445555555666677775433 3444444443

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.59  E-value=5.6e-05  Score=64.33  Aligned_cols=23  Identities=22%  Similarity=0.489  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccC
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      +|.+.|+.||||||+++.|.+.+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            78999999999999999998754

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.55  E-value=1.4e-05  Score=65.45  Aligned_cols=36  Identities=14%  Similarity=0.289  Sum_probs=27.3

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTL  306 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~  306 (369)
                      |-++|.++|+||||||||++.|++.+     .+..+..|..
T Consensus         1 m~Pvi~itG~~GSGKTTL~~~L~~~l~~~g~~v~v~~~d~~   41 (170)
T d1np6a_           1 MIPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH   41 (170)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEeccccc
Confidence            34689999999999999999998753     3445555543

>d1s2oa1 c.108.1.10 (A:1-244) Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sucrose-phosphatase Slr0953
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=97.55  E-value=4.8e-05  Score=66.33  Aligned_cols=38  Identities=24%  Similarity=0.252  Sum_probs=30.5

Q ss_pred             hHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCcc
Q psy4598         124 GMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAFF  181 (369)
Q Consensus       124 gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f~  181 (369)
                      ...+.+++++    ++++++++++||..                +|+.+-..+|..+.
T Consensus       165 ~a~~~l~~~~----gi~~~~~v~~GD~~----------------ND~~Ml~~~~~~va  202 (244)
T d1s2oa1         165 NATQYLQQHL----AMEPSQTLVCGDSG----------------NDIGLFETSARGVI  202 (244)
T ss_dssp             HHHHHHHHHT----TCCGGGEEEEECSG----------------GGHHHHTSSSEEEE
T ss_pred             HHHHHHHHhc----cCChhhEEEEcCCC----------------CCHHHHhhCCcEEE
Confidence            3566666664    78899999999998                89999988887653

>d2rbka1 c.108.1.10 (A:2-261) Sugar-phosphate phosphatase BT4131 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sugar-phosphate phosphatase BT4131
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.54  E-value=2.9e-05  Score=68.60  Aligned_cols=44  Identities=30%  Similarity=0.394  Sum_probs=36.1

Q ss_pred             ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecC
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQ   79 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq   79 (369)
                      .|++|||+||||+....+           .+-+...++|++|+++|++++++|-.
T Consensus         1 ~k~if~DlDGTL~~~~~~-----------~i~~~~~~al~~l~~~gi~v~~~TGR   44 (260)
T d2rbka1           1 TKALFFDIDGTLVSFETH-----------RIPSSTIEALEAAHAKGLKIFIATGR   44 (260)
T ss_dssp             CCEEEECSBTTTBCTTTS-----------SCCHHHHHHHHHHHHTTCEEEEECSS
T ss_pred             CeEEEEECCCCCcCCCCC-----------CCCHHHHHHHHHHHHCCCEEEEECCC
Confidence            489999999999864322           14567899999999999999999964

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.53  E-value=2.1e-05  Score=65.93  Aligned_cols=40  Identities=25%  Similarity=0.255  Sum_probs=30.4

Q ss_pred             ccccccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcc
Q psy4598         267 MKAALDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTL  306 (369)
Q Consensus       267 ~~~~~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~  306 (369)
                      .++..|.+|-++|++||||||+|+.|++.+     ....++.|.+
T Consensus        17 ~~~~~~~iIgI~G~~GSGKSTla~~L~~~l~~~~~~~~~~~~~~~   61 (198)
T d1rz3a_          17 IKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH   61 (198)
T ss_dssp             SCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred             ccCCCCEEEEEECCCCCCHHHHHHHHHHHhccccccceecccccc
Confidence            445556788899999999999999998864     3455565554

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=97.51  E-value=2.3e-05  Score=67.59  Aligned_cols=35  Identities=26%  Similarity=0.536  Sum_probs=30.7

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      |+-+|-++|.+||||||+++.|. .+|+.++++|.+
T Consensus         2 mk~iIgitG~igSGKStv~~~l~-~~G~~vidaD~i   36 (208)
T d1vhta_           2 LRYIVALTGGIGSGKSTVANAFA-DLGINVIDADII   36 (208)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHH-HTTCEEEEHHHH
T ss_pred             CCEEEEEECCCcCCHHHHHHHHH-HCCCcEEEchHH
Confidence            55588899999999999999886 679999999886

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.45  E-value=0.00011  Score=63.49  Aligned_cols=96  Identities=11%  Similarity=0.132  Sum_probs=50.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCC--cEEEeCCc----c----h-----------hH----------HHHHHHHHHHH
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLN--YTTVNRDT----L----G-----------SW----------QKCVSVMKAAL  320 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~--~~~i~~D~----~----~-----------~~----------~~~~~~~~~~l  320 (369)
                      .++|++-|+-||||||+++.|++.+.  ...+..-.    +    +           .+          ......+..++
T Consensus         3 Gk~I~iEG~DGsGKST~~~~L~~~L~~~~~~~~~p~~~~~~g~~ir~~l~~~~~~~~~~~~~llf~a~r~~~~~~i~~~l   82 (214)
T d1tmka_           3 GKLILIEGLDRTGKTTQCNILYKKLQPNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIVDKIKKDL   82 (214)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHTTTSEEEEESSCTTSHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             eEEEEEECCCCCcHHHHHHHHHHHHHhCCEEEEECCCCchHhHhHHHhhhhccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence            46899999999999999999998762  23332110    0    0           00          00123355667


Q ss_pred             hCCCcEEEeCCCCCHHH-----------HHHHHHHHHhcCCeEEEEEEeCCHHHHHHH
Q psy4598         321 DSGLSVVVDNTNPDKES-----------RHRYIEAAKQHGVRCIAVHMNISKEHAKHN  367 (369)
Q Consensus       321 ~~g~~vIiD~tn~~~~~-----------r~~~~~la~~~~~~v~~v~l~~~~e~~~~R  367 (369)
                      ..|..||.|-...+.-.           ...+..+....-.|=.++++++|++.+..|
T Consensus        83 ~~g~~VI~DRy~~S~~ayq~~~~~~~~~~~~~~~~~~~~~~PDl~i~Ld~~~~~~~~r  140 (214)
T d1tmka_          83 LEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPDLTLFLSTQDVDNNAE  140 (214)
T ss_dssp             HTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCSEEEEEECC-------
T ss_pred             hcCCeeEecCccccchHhhhhcccchHHHHHHHHHHhcCCCcceehhccccHHHHHHH
Confidence            78989999954322111           111222222112344788899988777665

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.0003  Score=61.04  Aligned_cols=30  Identities=30%  Similarity=0.278  Sum_probs=26.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEE
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTV  301 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i  301 (369)
                      |++|++-|+-||||||+++.|++.++...+
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~~~i   31 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHV   31 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhhcCC
Confidence            789999999999999999999998754444

>d1xvia_ c.108.1.10 (A:) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP)
species: Escherichia coli [TaxId: 562]

Probab=97.42  E-value=0.0001  Score=62.85  Aligned_cols=57  Identities=18%  Similarity=0.276  Sum_probs=41.8

Q ss_pred             eEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCC
Q psy4598          26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNV  105 (369)
Q Consensus        26 k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i  105 (369)
                      -++++|+||||+....            .+.+.+.++|++|+++|+.++++|-.+        ..    .+..++..+++
T Consensus         5 ~li~~DlDGTLl~~~~------------~i~~~~~~al~~l~~~Gi~~~i~TGR~--------~~----~~~~~~~~~~~   60 (232)
T d1xvia_           5 LLVFSDLDGTLLDSHS------------YDWQPAAPWLTRLREANVPVILCSSKT--------SA----EMLYLQKTLGL   60 (232)
T ss_dssp             EEEEEECTTTTSCSSC------------CSCCTTHHHHHHHHHTTCCEEEECSSC--------HH----HHHHHHHHTTC
T ss_pred             EEEEEECCCCccCCcC------------cCCHHHHHHHHHHHHCCCEEEEEeCCC--------hh----hchhHHHHhcc
Confidence            3678899999985431            146778999999999999999999732        22    24456677776


Q ss_pred             C
Q psy4598         106 P  106 (369)
Q Consensus       106 ~  106 (369)
                      .
T Consensus        61 ~   61 (232)
T d1xvia_          61 Q   61 (232)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=8.6e-05  Score=66.25  Aligned_cols=37  Identities=16%  Similarity=0.346  Sum_probs=29.4

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccCCc--EEEeCCcc
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPLNY--TTVNRDTL  306 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~~~--~~i~~D~~  306 (369)
                      ..|+-|+|.||||||||++|+++++.++.  ..++...+
T Consensus        43 ~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~i~~~~l   81 (256)
T d1lv7a_          43 KIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDF   81 (256)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSS
T ss_pred             CCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEEEEhHHh
Confidence            34577899999999999999999998765  44555554

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.39  E-value=0.00012  Score=63.72  Aligned_cols=59  Identities=15%  Similarity=0.315  Sum_probs=36.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcE--EEeCCcchhHHHHHHHHHHHHhCCCcEEEeCCC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYT--TVNRDTLGSWQKCVSVMKAALDSGLSVVVDNTN  332 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~--~i~~D~~~~~~~~~~~~~~~l~~g~~vIiD~tn  332 (369)
                      .-++|.||||+||||+|+.+++.+++.  .++.-............ .....+..+++|-..
T Consensus        36 ~~~L~~GPpGtGKT~lA~~la~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ide~~   96 (238)
T d1in4a2          36 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAIL-TSLERGDVLFIDEIH   96 (238)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHH-HHCCTTCEEEEETGG
T ss_pred             CeEEEECCCCCcHHHHHHHHHhccCCCcccccCcccccHHHHHHHH-HhhccCCchHHHHHH
Confidence            357899999999999999999987644  44443333222222222 223445566666543

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.37  E-value=0.00021  Score=61.76  Aligned_cols=86  Identities=13%  Similarity=0.139  Sum_probs=51.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC-------CcEEEeCCcchhHHHHHHHHHHHH-------hCCCcEEEeC-CCCCHHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL-------NYTTVNRDTLGSWQKCVSVMKAAL-------DSGLSVVVDN-TNPDKES  337 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~-------~~~~i~~D~~~~~~~~~~~~~~~l-------~~g~~vIiD~-tn~~~~~  337 (369)
                      ..++|.||||+||||+|+.+++.+       +...++.-..+.............       .....+++|. .......
T Consensus        46 ~~lll~Gp~G~GKTtla~~iak~l~~~~~~~~~~e~n~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iilide~d~~~~~~  125 (231)
T d1iqpa2          46 PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDA  125 (231)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHHHhcccCCCeeEEecCcccchhHHHHHHHHHHhhhhccCCCceEEeehhhhhcchhH
Confidence            357899999999999999999864       344555444333222222222221       1233455664 3456666


Q ss_pred             HHHHHHHHHhcCCeEEEEEEe
Q psy4598         338 RHRYIEAAKQHGVRCIAVHMN  358 (369)
Q Consensus       338 r~~~~~la~~~~~~v~~v~l~  358 (369)
                      ...++.........+.++...
T Consensus       126 ~~~ll~~l~~~~~~~~~i~~~  146 (231)
T d1iqpa2         126 QQALRRTMEMFSSNVRFILSC  146 (231)
T ss_dssp             HHHHHHHHHHTTTTEEEEEEE
T ss_pred             HHHHhhhcccCCcceEEEecc
Confidence            667777777766666655543

>d2amya1 c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphomannomutase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=4.7e-05  Score=65.27  Aligned_cols=42  Identities=17%  Similarity=0.340  Sum_probs=34.1

Q ss_pred             CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEec
Q psy4598          24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTN   78 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TN   78 (369)
                      ..|+++||+||||+....            .+.|...++|++|+++|. ++|+|-
T Consensus         2 ~~kl~~fDlDGTLl~~~~------------~i~~~~~~al~~l~~~g~-~~i~Tg   43 (243)
T d2amya1           2 GPALCLFDVDGTLTAPRQ------------KITKEMDDFLQKLRQKIK-IGVVGG   43 (243)
T ss_dssp             CSEEEEEESBTTTBCTTS------------CCCHHHHHHHHHHTTTSE-EEEECS
T ss_pred             CCEEEEEcCcCCeeCCCC------------cCCHHHHHHHHHHHcCCC-EEEEcC
Confidence            468999999999986431            268899999999998884 778885

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.37  E-value=0.00011  Score=65.13  Aligned_cols=31  Identities=16%  Similarity=0.318  Sum_probs=26.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEe
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVN  302 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~  302 (369)
                      +.=|+|.||||||||++|++++...++.++.
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~~~~~~~   70 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEESNFPFIK   70 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHTCSEEE
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhcccccccc
Confidence            4568999999999999999999988765544

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.00023  Score=61.54  Aligned_cols=31  Identities=23%  Similarity=0.197  Sum_probs=26.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEe
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVN  302 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~  302 (369)
                      .++|++-|+.||||||+++.|++.+....+.
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~l~~~~~~   32 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQLCEDWEVV   32 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGCTTEEEE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHhcCCCe
Confidence            5799999999999999999999988544443

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=97.35  E-value=0.00012  Score=64.96  Aligned_cols=34  Identities=12%  Similarity=0.294  Sum_probs=28.4

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeC
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNR  303 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~  303 (369)
                      ..|+-|+|.||||||||++|+++++.+++.++..
T Consensus        40 ~~~~giLl~GppGtGKT~la~aia~~~~~~~~~i   73 (247)
T d1ixza_          40 RIPKGVLLVGPPGVGKTHLARAVAGEARVPFITA   73 (247)
T ss_dssp             CCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred             CCCceEEEecCCCCChhHHHHHHHHHcCCCEEEE
Confidence            4456789999999999999999999987665544

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.22  E-value=6.7e-05  Score=65.59  Aligned_cols=35  Identities=11%  Similarity=0.212  Sum_probs=31.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEe-CCcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVN-RDTL  306 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~-~D~~  306 (369)
                      +.+|-|+|..||||||+|+.|++.+|+.+++ +|.+
T Consensus         1 M~iIgiTG~igSGKsTva~~l~e~~g~~~i~~aD~i   36 (241)
T d1deka_           1 MKLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPI   36 (241)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCCCeEEcccHHH
Confidence            4689999999999999999999999999998 5655

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.20  E-value=0.0001  Score=64.62  Aligned_cols=35  Identities=20%  Similarity=0.328  Sum_probs=27.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcE--EEeCCcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYT--TVNRDTL  306 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~--~i~~D~~  306 (369)
                      ...++|.||||+||||+++++++..+..  .++....
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~~~~~~~~~~~~~~   88 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDV   88 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHhhhhccccccc
Confidence            4578999999999999999999998644  4444443

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.19  E-value=0.0003  Score=62.51  Aligned_cols=36  Identities=11%  Similarity=0.131  Sum_probs=29.6

Q ss_pred             ccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCC
Q psy4598         269 AALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRD  304 (369)
Q Consensus       269 ~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D  304 (369)
                      .+.|+-|+|.||||||||+++++++...+..++..+
T Consensus        35 ~~~~~giLL~GppGtGKT~l~~ala~~~~~~~~~i~   70 (258)
T d1e32a2          35 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFLIN   70 (258)
T ss_dssp             CCCCCEEEEECCTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCCceeEEecCCCCCchHHHHHHHHHhCCeEEEEE
Confidence            345677899999999999999999999876665544

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.15  E-value=0.00013  Score=66.09  Aligned_cols=39  Identities=23%  Similarity=0.222  Sum_probs=31.3

Q ss_pred             cccccEEEEEEcCCCCcHHHHHHHHhccC--------CcEEEeCCcc
Q psy4598         268 KAALDSVLIMIGSQGSGKSSFVSTYLKPL--------NYTTVNRDTL  306 (369)
Q Consensus       268 ~~~~~~lIll~G~pGSGKSTla~~L~~~~--------~~~~i~~D~~  306 (369)
                      ....|-+|-|.|++||||||++..|.+.+        .+..|+.|++
T Consensus        23 ~~~~P~iIGi~G~qGSGKSTl~~~l~~~L~~~~~~~~~v~~iS~Ddf   69 (286)
T d1odfa_          23 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF   69 (286)
T ss_dssp             TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGG
T ss_pred             CCCCCEEEEeECCCCCCHHHHHHHHHHHHHHHhCCCcceEeeccCCC
Confidence            34456788899999999999999886542        5678899997

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.15  E-value=0.00054  Score=58.94  Aligned_cols=86  Identities=13%  Similarity=0.086  Sum_probs=51.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhccC-------CcEEEeCCcchhHHHHHHHHHHHHh--------CCCcEEEeCC-CCCHHHH
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPL-------NYTTVNRDTLGSWQKCVSVMKAALD--------SGLSVVVDNT-NPDKESR  338 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~-------~~~~i~~D~~~~~~~~~~~~~~~l~--------~g~~vIiD~t-n~~~~~r  338 (369)
                      ++|.||||+||||+|+.+++.+       +...++..+.+..............        ..+.+|+|.. .......
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l~~~~~~~~~~~~n~~~~~~~~~i~~~~~~~~~~~~~~~~~~~kviiiDe~d~~~~~~~  118 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQ  118 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHHHhccccccccccccccccCCceehhhHHHHHHHhhccCCCcceEEEEEecccccchhHH
Confidence            6889999999999999998764       2445555444433333333332222        2336777754 3455666


Q ss_pred             HHHHHHHHhcCCeEEEEEEeCC
Q psy4598         339 HRYIEAAKQHGVRCIAVHMNIS  360 (369)
Q Consensus       339 ~~~~~la~~~~~~v~~v~l~~~  360 (369)
                      ..++.........+.++.+..+
T Consensus       119 ~~ll~~~e~~~~~~~~i~~~~~  140 (224)
T d1sxjb2         119 QALRRTMELYSNSTRFAFACNQ  140 (224)
T ss_dssp             HTTHHHHHHTTTTEEEEEEESC
T ss_pred             HHHhhhccccccceeeeeccCc
Confidence            6666666666666555555443

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.15  E-value=6.2e-05  Score=61.82  Aligned_cols=24  Identities=21%  Similarity=0.447  Sum_probs=21.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      +.|+|+|+|||||||+++++++.+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l   25 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVL   25 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHH
Confidence            358999999999999999998763

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.09  E-value=0.00015  Score=56.91  Aligned_cols=55  Identities=11%  Similarity=0.257  Sum_probs=36.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC-------CcEEEeCCcchhHHHHHHHHHHHHhCCCcEEEeC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL-------NYTTVNRDTLGSWQKCVSVMKAALDSGLSVVVDN  330 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~-------~~~~i~~D~~~~~~~~~~~~~~~l~~g~~vIiD~  330 (369)
                      -.|+|.|.+||||||+|++|...+       .+..++.|.++   ++.-.|.+..+.|-.||+-.
T Consensus         7 f~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~ni~---ri~fva~e~~k~G~~~iv~~   68 (122)
T d1g8fa3           7 FSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNNKT---ELLSLIQDFIGSGSGLIIPD   68 (122)
T ss_dssp             EEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTTCH---HHHTTHHHHHHTTCEEEESS
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCCCHH---HHHHHHHHHHhcCCEEEEec
Confidence            378999999999999999996542       35566666554   23334444555565555433

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.09  E-value=0.00034  Score=62.38  Aligned_cols=35  Identities=11%  Similarity=0.215  Sum_probs=29.5

Q ss_pred             cccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCC
Q psy4598         270 ALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRD  304 (369)
Q Consensus       270 ~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D  304 (369)
                      +.++-|+|.||||||||+++++++..+++.++..+
T Consensus        39 ~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~~   73 (265)
T d1r7ra3          39 TPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK   73 (265)
T ss_dssp             CCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEEC
T ss_pred             CCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEEE
Confidence            34567899999999999999999999987766554

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.05  E-value=0.00016  Score=66.06  Aligned_cols=39  Identities=18%  Similarity=0.246  Sum_probs=32.5

Q ss_pred             cccccEEEEEEcCCCCcHHHHHHHHhccC-------CcEEEeCCcc
Q psy4598         268 KAALDSVLIMIGSQGSGKSSFVSTYLKPL-------NYTTVNRDTL  306 (369)
Q Consensus       268 ~~~~~~lIll~G~pGSGKSTla~~L~~~~-------~~~~i~~D~~  306 (369)
                      ....|-+|-++|++||||||+|+.|++.+       .+.+|+.|.+
T Consensus        76 ~~k~P~iIGIaG~sgSGKSTla~~L~~lL~~~~~~~~v~~Is~D~F  121 (308)
T d1sq5a_          76 GQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF  121 (308)
T ss_dssp             -CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred             CCCCCEEEEEeCCCCCCCcHHHHHHHHHHhhhcCCCceEEEeeeee
Confidence            34557899999999999999999998753       4678999998

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.02  E-value=0.0001  Score=67.45  Aligned_cols=35  Identities=26%  Similarity=0.464  Sum_probs=27.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCC--cEEEeCCcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLN--YTTVNRDTL  306 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~--~~~i~~D~~  306 (369)
                      +.-|+|+||||+|||.+|+++++.++  ...++.-.+
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~~~~~~~~i~~s~~   85 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKF   85 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             CceEEEECCCCCCHHHHHHHHhhccccchhccccccc
Confidence            45678999999999999999999864  445554444

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.99  E-value=0.0017  Score=55.80  Aligned_cols=31  Identities=29%  Similarity=0.612  Sum_probs=24.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccC----CcEEEeCC
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPL----NYTTVNRD  304 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~----~~~~i~~D  304 (369)
                      +|++.|++|||||||.++|.+..    .+..|+.|
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~~~~~~~ivn~d   36 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLD   36 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECC
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHhhCCeEEEEecC
Confidence            78999999999999999997532    45556543

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.97  E-value=0.00016  Score=59.57  Aligned_cols=22  Identities=32%  Similarity=0.678  Sum_probs=20.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhccC
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~  296 (369)
                      |+++|+|||||||+++.++..+
T Consensus         3 i~I~G~~G~GKSTLl~~i~~~l   24 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIVERL   24 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCcHHHHHHHHHHhcC
Confidence            7899999999999999998754

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.93  E-value=0.0013  Score=56.28  Aligned_cols=83  Identities=11%  Similarity=0.129  Sum_probs=45.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhccCC-------cEEEeCCcchhHHHHHHHHHHHHh------C-CCcEEEeCC-CCCHHHHH
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPLN-------YTTVNRDTLGSWQKCVSVMKAALD------S-GLSVVVDNT-NPDKESRH  339 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~~-------~~~i~~D~~~~~~~~~~~~~~~l~------~-g~~vIiD~t-n~~~~~r~  339 (369)
                      ++|.||||+||||+++.+++.+.       ...++...................      . .+.+|+|.. ........
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kiiiiDe~d~~~~~~~~  117 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQN  117 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHhhcCCCcceeEEecccccCCeeeeecchhhccccccccCCCeEEEEEeccccchhhHHH
Confidence            67899999999999999998742       122332222211211111211111      1 225677754 34556666


Q ss_pred             HHHHHHHhcCCeEEEEEE
Q psy4598         340 RYIEAAKQHGVRCIAVHM  357 (369)
Q Consensus       340 ~~~~la~~~~~~v~~v~l  357 (369)
                      .++....+..-.+.++.+
T Consensus       118 ~Ll~~le~~~~~~~~~~~  135 (227)
T d1sxjc2         118 ALRRVIERYTKNTRFCVL  135 (227)
T ss_dssp             HHHHHHHHTTTTEEEEEE
T ss_pred             HHHHHhhhcccceeeccc
Confidence            677766666555554444

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.91  E-value=0.0007  Score=58.34  Aligned_cols=32  Identities=19%  Similarity=0.334  Sum_probs=25.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTL  306 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~  306 (369)
                      ++|.|+||||||+++.+++...     .+.+++...+
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~~~~~~~~~~~~~~~   75 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF   75 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhccCccceEEechHHH
Confidence            7899999999999999998753     4556655443

>d2b8ea1 c.108.1.7 (A:416-434,A:548-663) Cation-transporting ATPase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Meta-cation ATPase, catalytic domain P
domain: Cation-transporting ATPase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.89  E-value=0.0044  Score=49.28  Aligned_cols=103  Identities=21%  Similarity=0.222  Sum_probs=67.5

Q ss_pred             ceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcC
Q psy4598          25 AKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLN  104 (369)
Q Consensus        25 ~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~  104 (369)
                      ...+.||.+|++...-         .|  .+-|++++.++.|++.|+++.|+|--            -......+.+.+|
T Consensus         3 ~~~~~~d~~~~~~~g~---------~D--~lr~~a~~~I~~L~~~Gi~v~ilTGD------------~~~~a~~ia~~lg   59 (135)
T d2b8ea1           3 VTAVIFDKTGTLTKGK---------PD--TLKESAKPAVQELKRMGIKVGMITGD------------NWRSAEAISRELN   59 (135)
T ss_dssp             CCEEEEECCCCCBCSC---------CC--CBCTTHHHHHHHHHHTTCEEEEECSS------------CHHHHHHHHHHHT
T ss_pred             EEEEEECCceEEEEec---------CC--CCCccHHHHHHHHHHcCCEEEEEcCc------------chhhhhHHHhhhh
Confidence            3578999999986432         12  26899999999999999999999952            1334556678888


Q ss_pred             CCeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHHHHhCCCCc
Q psy4598         105 VPVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLFAFNLNLAF  180 (369)
Q Consensus       105 i~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~A~n~Gi~f  180 (369)
                      +..  +++      +-+ |.--..+++.+.     .-..+.||||..                .|..+-..+++..
T Consensus        60 I~~--v~~------~~~-p~~k~~~v~~~q-----~~~~v~~vGDg~----------------nD~~aL~~Advgi  105 (135)
T d2b8ea1          60 LDL--VIA------EVL-PHQKSEEVKKLQ-----AKEVVAFVGDGI----------------NDAPALAQADLGI  105 (135)
T ss_dssp             CSE--EEC------SCC-HHHHHHHHHHHT-----TTSCEEEEECSS----------------SSHHHHHHSSEEE
T ss_pred             hhh--hcc------ccc-hhHHHHHHHHHH-----cCCEEEEEeCCC----------------CcHHHHHhCCeee
Confidence            742  211      111 222223333331     125678999999                7888777776654

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.80  E-value=0.00035  Score=65.32  Aligned_cols=35  Identities=17%  Similarity=0.233  Sum_probs=30.4

Q ss_pred             ccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeC
Q psy4598         269 AALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNR  303 (369)
Q Consensus       269 ~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~  303 (369)
                      .|.+..+++.||||+|||++|+.++..++..+++.
T Consensus       151 ~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~i  185 (362)
T d1svma_         151 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNV  185 (362)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECC
T ss_pred             CCCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence            35567999999999999999999999988777763

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.79  E-value=0.00024  Score=58.23  Aligned_cols=25  Identities=20%  Similarity=0.424  Sum_probs=21.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      +++|.++|.+||||||+..+|...+
T Consensus         1 Mkii~I~G~~gSGKTTli~~l~~~L   25 (165)
T d1xjca_           1 MNVWQVVGYKHSGKTTLMEKWVAAA   25 (165)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            3578899999999999999998753

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.78  E-value=0.00026  Score=67.93  Aligned_cols=34  Identities=24%  Similarity=0.385  Sum_probs=29.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDT  305 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~  305 (369)
                      |.=|+|+||+|||||.+|+.|++.++++++..|.
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~l~VPFv~~da   82 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA   82 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred             cccEEEECCCCCCHHHHHHHHHHHhCCCEEEeec
Confidence            5678999999999999999999998877776665

>d2fuea1 c.108.1.10 (A:13-256) Phosphomannomutase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphomannomutase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.78  E-value=0.00037  Score=59.21  Aligned_cols=39  Identities=18%  Similarity=0.337  Sum_probs=30.0

Q ss_pred             EEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEec
Q psy4598          27 IASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTN   78 (369)
Q Consensus        27 ~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TN   78 (369)
                      +++|||||||+....            .+-|...++|++|+++|. ++++|-
T Consensus         3 i~lFDlDGTLl~~~~------------~is~~~~~~i~~l~~~g~-~~i~tg   41 (244)
T d2fuea1           3 LCLFDVDGTLTPARQ------------KIDPEVAAFLQKLRSRVQ-IGVVGG   41 (244)
T ss_dssp             EEEEESBTTTBSTTS------------CCCHHHHHHHHHHTTTSE-EEEECS
T ss_pred             EEEEccccCccCCCC------------cCCHHHHHHHHHHHhCCC-EEEEec
Confidence            455899999986532            257889999999999995 566765

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.74  E-value=0.0025  Score=53.18  Aligned_cols=87  Identities=16%  Similarity=0.259  Sum_probs=49.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccC----------------------CcEEEeCCcch-------hHHHHHHHHHHHHh---
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPL----------------------NYTTVNRDTLG-------SWQKCVSVMKAALD---  321 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~----------------------~~~~i~~D~~~-------~~~~~~~~~~~~l~---  321 (369)
                      .|.++|.||||||||.++|...-                      ....++.+.+.       .............+   
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTRE  104 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCT
T ss_pred             EEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccccceEEEEEeeccccccccccchhhhHHhhhhcccc
Confidence            48899999999999999997321                      11122222221       11112222222222   


Q ss_pred             --CCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCC
Q psy4598         322 --SGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNIS  360 (369)
Q Consensus       322 --~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~  360 (369)
                        ..-.+|+|....-...-..+++.++..+.++.++.=.++
T Consensus       105 ~~~~vi~viD~~~~~~~~~~~~~~~l~~~~~piivv~NK~D  145 (195)
T d1svia_         105 ELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKAD  145 (195)
T ss_dssp             TEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred             chhhhhhhhhccccccccccccccccccccCcceechhhcc
Confidence              122456888765444556777788888998766655444

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.72  E-value=0.0024  Score=54.96  Aligned_cols=34  Identities=24%  Similarity=0.486  Sum_probs=27.9

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDT  305 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~  305 (369)
                      ..++++.|+||||||+++.+++...     .+.+++.+.
T Consensus        26 gsl~li~G~pGsGKT~l~~qia~~~~~~~~~~~~is~e~   64 (242)
T d1tf7a2          26 DSIILATGATGTGKTLLVSRFVENACANKERAILFAYEE   64 (242)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSS
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHHhccccceeeccC
Confidence            4689999999999999999998763     466777654

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.0038  Score=54.34  Aligned_cols=23  Identities=22%  Similarity=0.508  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++.++||+||||||+.+.++-.
T Consensus        27 ei~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          27 EFVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCChHHHHHHHHhcC
Confidence            58899999999999999999764

>d1u02a_ c.108.1.15 (A:) Trehalose-6-phosphate phosphatase related protein {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Trehalose-phosphatase
domain: Trehalose-6-phosphate phosphatase related protein
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=96.70  E-value=0.00061  Score=57.53  Aligned_cols=44  Identities=18%  Similarity=0.304  Sum_probs=32.5

Q ss_pred             EEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEec
Q psy4598          27 IASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTN   78 (369)
Q Consensus        27 ~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TN   78 (369)
                      +++||+||||+...      ..+++.. +.|.+.++|++|++. ..++|+|-
T Consensus         2 Li~~DlDGTL~~~~------~~~~~~~-i~~~~~~~l~~l~~~-~~v~i~TG   45 (229)
T d1u02a_           2 LIFLDYDGTLVPII------MNPEESY-ADAGLLSLISDLKER-FDTYIVTG   45 (229)
T ss_dssp             EEEEECBTTTBCCC------SCGGGCC-CCHHHHHHHHHHHHH-SEEEEECS
T ss_pred             EEEEEecCCCCCCC------CChhhCC-CCHHHHHHHHHHhhC-CCEEEEcC
Confidence            68999999998532      1223333 578899999999874 56888885

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=96.67  E-value=0.0034  Score=57.48  Aligned_cols=23  Identities=17%  Similarity=0.225  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccC
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      .|.+-|+-||||||+++.|++.+
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l   28 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALG   28 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC--
T ss_pred             EEEEECCcCCCHHHHHHHHHHHh
Confidence            38889999999999999999875

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.0025  Score=55.93  Aligned_cols=24  Identities=29%  Similarity=0.470  Sum_probs=21.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      ..|.++|++||||||+.+.+...+
T Consensus        30 e~vaIvG~sGsGKSTLl~ll~gl~   53 (241)
T d2pmka1          30 EVIGIVGRSGSGKSTLTKLIQRFY   53 (241)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            578999999999999999998754

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.63  E-value=0.005  Score=53.81  Aligned_cols=52  Identities=21%  Similarity=0.248  Sum_probs=32.4

Q ss_pred             HHHHHHHHhCCCcEEEeC--CCCCHHHHHHHHHHH----HhcCCeEEEEEEeCCHHHHHH
Q psy4598         313 VSVMKAALDSGLSVVVDN--TNPDKESRHRYIEAA----KQHGVRCIAVHMNISKEHAKH  366 (369)
Q Consensus       313 ~~~~~~~l~~g~~vIiD~--tn~~~~~r~~~~~la----~~~~~~v~~v~l~~~~e~~~~  366 (369)
                      ...|+..+..-..+++|-  +++++..+..+.++.    ++.|..+  ++..=+.+++.+
T Consensus       148 v~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tv--i~vTHd~~~~~~  205 (240)
T d1g2912         148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTT--IYVTHDQVEAMT  205 (240)
T ss_dssp             HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEE--EEEESCHHHHHH
T ss_pred             HHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEE--EEEcCCHHHHHH
Confidence            445566666777888994  567888877766554    4456554  555555555443

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.60  E-value=0.0025  Score=54.54  Aligned_cols=83  Identities=12%  Similarity=0.127  Sum_probs=46.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhccC--------CcEEEeCCcchhHHHHHHHHHHH---------------Hh--CCCcEEEe
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPL--------NYTTVNRDTLGSWQKCVSVMKAA---------------LD--SGLSVVVD  329 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~--------~~~~i~~D~~~~~~~~~~~~~~~---------------l~--~g~~vIiD  329 (369)
                      ++|.||||+||||+++.+++.+        ....++....+............               ..  ..+.+|+|
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiD  115 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILD  115 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEET
T ss_pred             EEEECCCCCChHHHHHHHHHHHcCCcccccchhheeccccccchHHHHHHHHHhhhhhhhhhHHHHhhccccCceEEEEe
Confidence            7899999999999999999863        34445544433222111111111               11  11246666


Q ss_pred             CC-CCCHHHHHHHHHHHHhcCCeEEEEEE
Q psy4598         330 NT-NPDKESRHRYIEAAKQHGVRCIAVHM  357 (369)
Q Consensus       330 ~t-n~~~~~r~~~~~la~~~~~~v~~v~l  357 (369)
                      .. ++.......+..+.........++.+
T Consensus       116 e~d~l~~~~~~~l~~~~~~~~~~~~~i~~  144 (237)
T d1sxjd2         116 EADSMTADAQSALRRTMETYSGVTRFCLI  144 (237)
T ss_dssp             TGGGSCHHHHHHHHHHHHHTTTTEEEEEE
T ss_pred             cccccCHHHHHHHhhcccccccccccccc
Confidence            43 34556666666666655555555444

>d1nf2a_ c.108.1.10 (A:) Hypothetical protein TM0651 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein TM0651
species: Thermotoga maritima [TaxId: 2336]

Probab=96.60  E-value=0.00067  Score=59.63  Aligned_cols=42  Identities=19%  Similarity=0.256  Sum_probs=32.9

Q ss_pred             CceEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEec
Q psy4598          24 SAKIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTN   78 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TN   78 (369)
                      +.|+++||+||||+....            .+.|.+.++|++|++.| .++++|-
T Consensus         1 m~Kli~~DlDGTL~~~~~------------~i~~~~~~al~~l~~~~-~~~i~TG   42 (267)
T d1nf2a_           1 MYRVFVFDLDGTLLNDNL------------EISEKDRRNIEKLSRKC-YVVFASG   42 (267)
T ss_dssp             CBCEEEEECCCCCSCTTS------------CCCHHHHHHHHHHTTTS-EEEEECS
T ss_pred             CeEEEEEeCCccccCCcC------------ccCHHHHHHHHHHHcCC-EEEEECC
Confidence            358999999999986432            25688999999998765 6888874

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.58  E-value=0.0057  Score=53.89  Aligned_cols=23  Identities=30%  Similarity=0.505  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      ..+.++|++||||||+++.|...
T Consensus        42 e~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          42 KTVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTTT
T ss_pred             CEEEEECCCCChHHHHHHHHhcc
Confidence            57899999999999999999764

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.55  E-value=0.00033  Score=63.29  Aligned_cols=34  Identities=21%  Similarity=0.449  Sum_probs=27.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTL  306 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~  306 (369)
                      .+|-++|.+||||||++++|.+.+     ++.+|+.|.+
T Consensus         5 pIIgIaG~SGSGKTTva~~l~~i~~~~~v~~~iI~~Dsf   43 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF   43 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGG
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHhhcCCCeEEEeCCCC
Confidence            589999999999999999987753     5679999987

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=96.55  E-value=0.0041  Score=54.36  Aligned_cols=52  Identities=15%  Similarity=0.216  Sum_probs=32.9

Q ss_pred             HHHHHHHHhCCCcEEEeC--CCCCHHHHHHHHH----HHHhcCCeEEEEEEeCCHHHHHH
Q psy4598         313 VSVMKAALDSGLSVVVDN--TNPDKESRHRYIE----AAKQHGVRCIAVHMNISKEHAKH  366 (369)
Q Consensus       313 ~~~~~~~l~~g~~vIiD~--tn~~~~~r~~~~~----la~~~~~~v~~v~l~~~~e~~~~  366 (369)
                      ...|+..+..-..+++|-  +++++..+..+.+    +.++.+..  ++++.-+.+++.+
T Consensus       135 vaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~t--vi~vtHd~~~~~~  192 (240)
T d2onka1         135 VALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVP--ILHVTHDLIEAAM  192 (240)
T ss_dssp             HHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCC--EEEEESCHHHHHH
T ss_pred             HHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCe--EEEEeCCHHHHHH
Confidence            455666667777899995  4567777766655    44555665  4555556555543

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=96.54  E-value=0.0021  Score=58.76  Aligned_cols=34  Identities=29%  Similarity=0.448  Sum_probs=25.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC----CcEEEeCCcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL----NYTTVNRDTL  306 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~----~~~~i~~D~~  306 (369)
                      -.+++.||||+|||.+|++|+...    +...|+..++
T Consensus       124 g~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~  161 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEP  161 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCS
T ss_pred             ceEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHh
Confidence            356678999999999999999874    3455665444

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.52  E-value=0.0042  Score=53.91  Aligned_cols=24  Identities=21%  Similarity=0.451  Sum_probs=21.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      .++.++||+||||||+.+.++-..
T Consensus        27 e~~~liGpsGaGKSTll~~l~Gl~   50 (229)
T d3d31a2          27 EYFVILGPTGAGKTLFLELIAGFH   50 (229)
T ss_dssp             CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCc
Confidence            588999999999999999998653

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.51  E-value=0.0038  Score=55.11  Aligned_cols=24  Identities=21%  Similarity=0.451  Sum_probs=21.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      ..+.++|++||||||+.+.+...+
T Consensus        45 e~vaivG~sGsGKSTLl~ll~gl~   68 (255)
T d2hyda1          45 ETVAFVGMSGGGKSTLINLIPRFY   68 (255)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHHhcC
Confidence            578999999999999999987643

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.0062  Score=53.53  Aligned_cols=24  Identities=29%  Similarity=0.477  Sum_probs=21.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      .++.++|++||||||+.+.+...+
T Consensus        41 e~vaivG~sGsGKSTLl~li~gl~   64 (251)
T d1jj7a_          41 EVTALVGPNGSGKSTVAALLQNLY   64 (251)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhccc
Confidence            578999999999999999998654

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.45  E-value=0.00068  Score=59.03  Aligned_cols=38  Identities=24%  Similarity=0.399  Sum_probs=27.8

Q ss_pred             hhhhhhhccccccEEEEEEcCCCCcHHHHHHHHhccCC
Q psy4598         260 WQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLN  297 (369)
Q Consensus       260 ~~~~~~~~~~~~~~lIll~G~pGSGKSTla~~L~~~~~  297 (369)
                      +++-+.........+|++.|++|+|||++++.+++..+
T Consensus        17 R~~el~~l~~~~~~~i~i~G~~G~GKTsLl~~~~~~~~   54 (283)
T d2fnaa2          17 REKEIEKLKGLRAPITLVLGLRRTGKSSIIKIGINELN   54 (283)
T ss_dssp             CHHHHHHHHHTCSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence            33333333344557899999999999999999988654

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=96.31  E-value=0.0044  Score=54.24  Aligned_cols=24  Identities=29%  Similarity=0.502  Sum_probs=21.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      -..+.++|++||||||+.+.+...
T Consensus        28 Ge~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          28 NSIIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             TEEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            368899999999999999999764

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.30  E-value=0.00078  Score=58.59  Aligned_cols=26  Identities=15%  Similarity=0.256  Sum_probs=22.6

Q ss_pred             ccEEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         271 LDSVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       271 ~~~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      .+..++|.||||+||||+++.+++.+
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~l   67 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWELY   67 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHH
Confidence            34678999999999999999998764

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.30  E-value=0.0073  Score=52.74  Aligned_cols=52  Identities=15%  Similarity=0.241  Sum_probs=33.0

Q ss_pred             HHHHHHHHhCCCcEEEe--CCCCCHHHHHHHHHHHH----hcCCeEEEEEEeCCHHHHHH
Q psy4598         313 VSVMKAALDSGLSVVVD--NTNPDKESRHRYIEAAK----QHGVRCIAVHMNISKEHAKH  366 (369)
Q Consensus       313 ~~~~~~~l~~g~~vIiD--~tn~~~~~r~~~~~la~----~~~~~v~~v~l~~~~e~~~~  366 (369)
                      ...|+..+..-..+++|  .+++++..+..+.++.+    +.|..  +++..=+.+++.+
T Consensus       149 vaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~t--vi~vTHdl~~~~~  206 (240)
T d3dhwc1         149 VAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLT--ILLITHEMDVVKR  206 (240)
T ss_dssp             HHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCE--EEEEBSCHHHHHH
T ss_pred             HHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCE--EEEEcCCHHHHHH
Confidence            34556666677778888  45778888877766554    44554  5666666655543

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.30  E-value=0.013  Score=50.73  Aligned_cols=23  Identities=26%  Similarity=0.411  Sum_probs=20.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++.++|++||||||+.+.++-.
T Consensus        32 e~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          32 EFVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCcchhhHhccCC
Confidence            57899999999999999998764

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.29  E-value=0.007  Score=52.82  Aligned_cols=23  Identities=22%  Similarity=0.482  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++-+.|++||||||+.+.+.-.
T Consensus        33 e~~~liGpsGaGKSTLl~~i~Gl   55 (239)
T d1v43a3          33 EFLVLLGPSGCGKTTTLRMIAGL   55 (239)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCChHHHHHHHHHcC
Confidence            57899999999999999999864

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.26  E-value=0.01  Score=48.13  Aligned_cols=88  Identities=23%  Similarity=0.251  Sum_probs=49.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCC--------------cEEEe--------CCcch--------hHHHHHHHHHHHHhCC
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLN--------------YTTVN--------RDTLG--------SWQKCVSVMKAALDSG  323 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~--------------~~~i~--------~D~~~--------~~~~~~~~~~~~l~~g  323 (369)
                      .|+++|.|++|||||.++|.....              ...++        .|...        ........+...+..-
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~a   81 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREA   81 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCcceecccCceeeccccccccccccccccccccceeeeeccccccccccccccccccC
Confidence            478999999999999999974311              01111        11111        1223344455555443


Q ss_pred             CcE--EEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCH
Q psy4598         324 LSV--VVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNISK  361 (369)
Q Consensus       324 ~~v--IiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~~  361 (369)
                      ..+  ++|........-..+.++++..+.++.++.=.++.
T Consensus        82 d~i~~~~~~~~~~~~~~~~~~~~l~~~~~pviiv~NK~Dl  121 (171)
T d1mkya1          82 DLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAEN  121 (171)
T ss_dssp             SEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCS
T ss_pred             cEEEEeecccccccccccccccccccccccccccchhhhh
Confidence            333  35655444444456677778888887766555554

>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Hypothetical protein YorR
species: Bacillus subtilis [TaxId: 1423]

Probab=96.25  E-value=0.019  Score=43.34  Aligned_cols=93  Identities=17%  Similarity=0.245  Sum_probs=64.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcchh----HHHHHHHHHHHHhCCCcEEEeCCCCC--------------
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS----WQKCVSVMKAALDSGLSVVVDNTNPD--------------  334 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~~~----~~~~~~~~~~~l~~g~~vIiD~tn~~--------------  334 (369)
                      ++|++-||-.|=|||+|..|.+.+.+++|....+.-    -+++.+..... ....+||+|..-.+              
T Consensus         1 tliilegpdccfkstvaaklskelkypiikgssfelaksgneklfehfnkl-adednviidrfvysnlvyakkfkdysil   79 (164)
T d2axpa1           1 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSGNEKLFEHFNKL-ADEDNVIIDRFVYSNLVYAKKFKDYSIL   79 (164)
T ss_dssp             CEEEEECCSSSCHHHHHHHHHHHHTCCEEECCCHHHHHHCHHHHHHHHHHH-TTCCSEEEESCHHHHHHHTTTBSSCCCC
T ss_pred             CeEEEeCCchhhHHHHHHHHHhhhcCceecCchhhhhhccCHHHHHHHHhh-ccccceeeehhhhhhhHHHhhcccceeh
Confidence            378999999999999999999999999999888742    23444444443 44568999864211              


Q ss_pred             HHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHc
Q psy4598         335 KESRHRYIEAAKQHGVRCIAVHMNISKEHAKHNI  368 (369)
Q Consensus       335 ~~~r~~~~~la~~~~~~v~~v~l~~~~e~~~~Rn  368 (369)
                      .+..-++++  .+-.....++|+.+++.++..|-
T Consensus        80 terqlrfie--dkikakakvvylhadpsvikkrl  111 (164)
T d2axpa1          80 TERQLRFIE--DKIKAKAKVVYLHADPSVIKKRL  111 (164)
T ss_dssp             CHHHHHHHH--HHHTTTEEEEEEECCHHHHHHHH
T ss_pred             hHHHHHHHH--HHhhhheeEEEEecChHHHHHHh
Confidence            111222332  33445567899999999888773

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.24  E-value=0.0051  Score=53.28  Aligned_cols=25  Identities=28%  Similarity=0.476  Sum_probs=21.8

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      |..+++.|+||+||||+|+.+++.+
T Consensus        34 ~~~~Ll~Gp~G~GKtt~a~~~~~~l   58 (239)
T d1njfa_          34 HHAYLFSGTRGVGKTSIARLLAKGL   58 (239)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeeEEEECCCCCcHHHHHHHHHHHh
Confidence            4578999999999999999998754

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.21  E-value=0.0053  Score=53.34  Aligned_cols=24  Identities=25%  Similarity=0.367  Sum_probs=20.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      .++++.||||+|||++++.+++.+
T Consensus        47 ~~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          47 MIYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEEECTTCCSSSHHHHHHHHHHHH
T ss_pred             eEEEeECCCCCCHHHHHHHHHHHH
Confidence            356678999999999999999763

>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NLI interacting factor-like phosphatase
domain: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.0017  Score=54.44  Aligned_cols=105  Identities=15%  Similarity=0.239  Sum_probs=63.5

Q ss_pred             CceEEEEecCCceeecCCCCCCCCCccc--------------cccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCH
Q psy4598          24 SAKIASFDLDGTLITTKSGKVFPVDTHD--------------WKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMST   89 (369)
Q Consensus        24 ~~k~~~fDlDgTLi~~~sg~~~~~~~~d--------------~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~   89 (369)
                      ..+.+++|||+||+.+....   ....|              +..+-|++.+.|+.+.+. |.|+|.|..+         
T Consensus        14 ~k~~LVLDLDeTLihs~~~~---~~~~~~~~~~~~~~~~~~~~v~~RP~l~eFL~~l~~~-yei~I~Ta~~---------   80 (181)
T d1ta0a_          14 DKICVVIDLDETLVHSSFKP---VNNADFIIPVEIDGVVHQVYVLKRPHVDEFLQRMGEL-FECVLFTASL---------   80 (181)
T ss_dssp             TSCEEEECCBTTTEEEESSC---CTTCSEEEEEEETTEEEEEEEEECTTHHHHHHHHHHH-SEEEEECSSC---------
T ss_pred             CCeEEEEeCCCCEEccccCC---CCCccceeeecccceeeeeEEecCCCHHHHHHHHHhc-eEEEEEcCCc---------
Confidence            45789999999999864211   11111              123579999999999866 9999999832         


Q ss_pred             HHHHHHHHHHHHHcCC--CeEEEEecCCCCCCCCchhHHHHHHHHhcCCccccCCccEEeeCcc
Q psy4598          90 RDFQAKAEKIIKSLNV--PVQMFVATQYDRYRKPVPGMWEYLSQEKNGDLAIDISQSFYAGDAA  151 (369)
Q Consensus        90 ~~~~~~i~~~l~~l~i--~~~~~~~~~~~~~rKP~~gm~~~~~~~~~~~~~i~~~~s~~VGD~~  151 (369)
                         +...+.+++.++-  .+......+.+...++.   +   .+++. .++-+.+++++|-|+.
T Consensus        81 ---~~YA~~il~~ldp~~~~~~~~~r~~c~~~~~~---~---~KdL~-~l~~~l~~vvivDd~~  134 (181)
T d1ta0a_          81 ---AKYADPVADLLDKWGAFRARLFRESCVFHRGN---Y---VKDLS-RLGRDLRRVLILDNSP  134 (181)
T ss_dssp             ---HHHHHHHHHHHCSSCCEEEEECGGGSEEETTE---E---ECCGG-GSCSCGGGEEEECSCG
T ss_pred             ---HHHHHHHHHHhccCCceeEEEEeeeeeecCCc---c---cccHh-hcCCCHHHeEEEcCCh
Confidence               3345556666543  24433334333333221   1   11111 0345778999999987

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.18  E-value=0.0012  Score=60.33  Aligned_cols=28  Identities=21%  Similarity=0.398  Sum_probs=24.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCCcEEE
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLNYTTV  301 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~~~~i  301 (369)
                      .++|+||||+|||.+|+.|++.++..++
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~l~~~~i   81 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKALGIELL   81 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHTCEEE
T ss_pred             EEEEECCCcchhHHHHHHHHhhccCCee
Confidence            6889999999999999999998765444

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=96.17  E-value=0.0082  Score=52.46  Aligned_cols=33  Identities=15%  Similarity=0.164  Sum_probs=25.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc---------------CCcEEEeCCc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP---------------LNYTTVNRDT  305 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~---------------~~~~~i~~D~  305 (369)
                      .+.+|+|+||+|||||+..++..               .++.+++.+.
T Consensus        30 ~~~~i~G~~G~GKS~l~l~la~~ia~g~~~~~~~~~~~~~vl~~~~E~   77 (274)
T d1nlfa_          30 TVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAED   77 (274)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSS
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHcCCCcccccccCCCceEEEeccc
Confidence            36789999999999999988653               1466777765

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.17  E-value=0.0014  Score=54.76  Aligned_cols=33  Identities=18%  Similarity=0.303  Sum_probs=26.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      .-|+++|+||+||||+|.+|.++ ++.+|+-|..
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~-g~~lv~DD~~   47 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQR-GHRLIADDRV   47 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT-TCEEEEEEEE
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc-CCeEEecCeE
Confidence            46899999999999999999876 6666665543

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.10  E-value=0.011  Score=51.64  Aligned_cols=23  Identities=26%  Similarity=0.541  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++-|.||+||||||+.+.+.-.
T Consensus        33 ei~~liGpnGaGKSTl~~~i~Gl   55 (240)
T d1ji0a_          33 QIVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            58899999999999999999754

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.06  E-value=0.0017  Score=54.20  Aligned_cols=33  Identities=24%  Similarity=0.365  Sum_probs=26.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      .-|+++|+||+||||+|.+|.++ ++.+++-|..
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~-G~~lvaDD~v   48 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINK-NHLFVGDDAI   48 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTT-TCEEEEEEEE
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc-CCceecCCeE
Confidence            45899999999999999999875 5566665553

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=96.04  E-value=0.01  Score=52.43  Aligned_cols=60  Identities=18%  Similarity=0.345  Sum_probs=40.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCCc-ch--------------------hHHHHHHHHHHHHhCC--
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRDT-LG--------------------SWQKCVSVMKAALDSG--  323 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~-----~~~~~i~~D~-~~--------------------~~~~~~~~~~~~l~~g--  323 (369)
                      ..++.+.|+|||||||++-+++..     ..+.+|+... +.                    ..+...+.+...++.+  
T Consensus        54 g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~~~~~~~a~~~Gvd~d~v~~~~~~~~E~~~~~i~~l~~~~~~  133 (263)
T d1u94a1          54 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV  133 (263)
T ss_dssp             TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred             ceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccccccCHHHHHHhCCCHHHEEEecCCCHHHHHHHHHHHHhcCCC
Confidence            368899999999999999988764     2467777653 21                    1344455555555444  


Q ss_pred             CcEEEeCC
Q psy4598         324 LSVVVDNT  331 (369)
Q Consensus       324 ~~vIiD~t  331 (369)
                      ..+|||..
T Consensus       134 ~liViDSi  141 (263)
T d1u94a1         134 DVIVVDSV  141 (263)
T ss_dssp             SEEEEECG
T ss_pred             CEEEEECc
Confidence            46888864

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.01  E-value=0.0069  Score=52.94  Aligned_cols=23  Identities=22%  Similarity=0.453  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++.+.|++||||||+.+.+.-.
T Consensus        32 e~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          32 ERFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             CEEEEECSCHHHHHHHHHHHHTS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcC
Confidence            57899999999999999999864

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.00  E-value=0.0012  Score=57.27  Aligned_cols=22  Identities=27%  Similarity=0.542  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~  295 (369)
                      -++|.||||+||||+++.+++.
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            3689999999999999999875

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.96  E-value=0.0024  Score=52.85  Aligned_cols=33  Identities=24%  Similarity=0.343  Sum_probs=26.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  306 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~~  306 (369)
                      .-|+++|+||+||||++-+|.++ ++.+|+-|..
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~-g~~li~DD~~   48 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKR-GHRLVADDNV   48 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHT-TCEEEESSEE
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHc-CCeEEeCCeE
Confidence            46899999999999999998887 5566655553

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.93  E-value=0.0073  Score=53.60  Aligned_cols=30  Identities=17%  Similarity=0.282  Sum_probs=23.9

Q ss_pred             hccccccEEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         266 VMKAALDSVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       266 ~~~~~~~~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      ...+..+.-++|+|+||+|||++++.|++.
T Consensus        33 iL~r~~k~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          33 VLCRRRKNNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             HHTSSSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHhcCccCCcEEECCCCCcHHHHHHHHHHH
Confidence            334444556789999999999999999975

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.85  E-value=0.00075  Score=53.80  Aligned_cols=37  Identities=30%  Similarity=0.657  Sum_probs=29.0

Q ss_pred             ceEEEEEcCCCCCcchhhhhccC-CCcccccccccccc
Q psy4598         223 KQVLIMIGSQGSGKSSFVSTYLK-PLNYTTVNRDTLGS  259 (369)
Q Consensus       223 ~~i~v~~g~~~~gks~~~~~~~~-~~~~~~i~r~~~~~  259 (369)
                      +.+++++|+|||||||+++.+.. ..++..++.+.++.
T Consensus         2 kklIii~G~pGsGKTTla~~L~~~~~~~~~~~~d~~~~   39 (152)
T d1ly1a_           2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQ   39 (152)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHSTTEEEECHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHhCCCCEEechHHHHH
Confidence            35788999999999999998753 34677788777654

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.002  Score=53.36  Aligned_cols=23  Identities=26%  Similarity=0.339  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++++.|+||||||+++.+++..
T Consensus        24 ~v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          24 SITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHH
Confidence            68999999999999999998754

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.78  E-value=0.0012  Score=53.48  Aligned_cols=41  Identities=24%  Similarity=0.422  Sum_probs=31.5

Q ss_pred             CCCceEEEEEcCCCCCcchhhhhccCCCcccccccccccch
Q psy4598         220 HDKKQVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSW  260 (369)
Q Consensus       220 ~~~~~i~v~~g~~~~gks~~~~~~~~~~~~~~i~r~~~~~~  260 (369)
                      ...+.|+|+.|+|||||||+++.+....++..++.+.+...
T Consensus         3 ~~~~~iivl~G~~GsGKsT~a~~La~~l~~~~~~~d~~~~~   43 (171)
T d1knqa_           3 NHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPR   43 (171)
T ss_dssp             CTTSEEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCCH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeechhhhhHH
Confidence            46788999999999999999997655446666666666543

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=95.70  E-value=0.024  Score=51.66  Aligned_cols=25  Identities=20%  Similarity=0.117  Sum_probs=22.4

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      ...|.+-|+-||||||+++.|++.+
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~~l   30 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMASAA   30 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSGG
T ss_pred             eEEEEEECCccCCHHHHHHHHHHHh
Confidence            3578999999999999999999875

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=95.68  E-value=0.018  Score=47.19  Aligned_cols=86  Identities=15%  Similarity=0.146  Sum_probs=50.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhccCCcEE-----------EeCC---------cc-------hhHHHHHHHHHHHHhCCC--c
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPLNYTT-----------VNRD---------TL-------GSWQKCVSVMKAALDSGL--S  325 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~~~~~-----------i~~D---------~~-------~~~~~~~~~~~~~l~~g~--~  325 (369)
                      |-++|.|.+|||||.++|........           +..+         ..       .....+.+.+..++..-.  .
T Consensus         8 IaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~l~~~d~~i   87 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGHADLIRAVVSAADIIDLAL   87 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSHHHHHHHHHHHTTSCCEEE
T ss_pred             EEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccccccccchhhhhhhccccc
Confidence            78999999999999999985321100           0000         00       124455556666665543  3


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCC
Q psy4598         326 VVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNIS  360 (369)
Q Consensus       326 vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~  360 (369)
                      +++|+...-...-..+...++..+.++.++.=..+
T Consensus        88 lv~d~~~g~~~~~~~~~~~~~~~~~p~iiv~NKiD  122 (179)
T d1wb1a4          88 IVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSD  122 (179)
T ss_dssp             EEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTT
T ss_pred             cccccccccchhhhhhhhhhhhcCCcceecccccc
Confidence            45787765333334455778888999766655444

>d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific 5'-nucleotidase {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: 5' nucleotidase-like
domain: Cytosolic IMP-GMP specific 5'-nucleotidase
species: Legionella pneumophila [TaxId: 446]

Probab=95.63  E-value=0.016  Score=55.10  Aligned_cols=107  Identities=15%  Similarity=0.182  Sum_probs=68.8

Q ss_pred             CccccccccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHH-HHHHHHc-----CC--CeEEEEecCC----
Q psy4598          48 DTHDWKLLFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKA-EKIIKSL-----NV--PVQMFVATQY----  115 (369)
Q Consensus        48 ~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i-~~~l~~l-----~i--~~~~~~~~~~----  115 (369)
                      ++..+....|.++..|++|++.|.+++++||         +.-++...+ ..++...     +.  .|+++|+...    
T Consensus       179 np~kYv~k~~~l~~~L~~lr~~GKklFLiTN---------S~~~y~~~~m~y~~~~~~~~g~dWr~lFDvVIv~A~KP~F  249 (458)
T d2bdea1         179 NLKKYVIREKEVVEGLKHFIRYGKKIFILTN---------SEYSYSKLLLDYALSPFLDKGEHWQGLFEFVITLANKPRF  249 (458)
T ss_dssp             CTTTSEECCHHHHHHHHHHHTTTCEEEEECS---------SCHHHHHHHHHHHHGGGSCTTCCGGGTEEEEEESCCHHHH
T ss_pred             CHHHhhcCChhHHHHHHHHHHcCCeEEEEec---------CcHHHHHHHhhhhcccCCCCCCChHHhceEEEeCCCCCCc
Confidence            3444444468899999999999999999999         445565543 3444221     22  4887765421    


Q ss_pred             --------------------CCCCCCc---hhHHHHHHHHhcCCccccCCccEEeeCccccccccCCCCCCCCCcccHHH
Q psy4598         116 --------------------DRYRKPV---PGMWEYLSQEKNGDLAIDISQSFYAGDAAGRAANWAPKKKKDFACTDHLF  172 (369)
Q Consensus       116 --------------------~~~rKP~---~gm~~~~~~~~~~~~~i~~~~s~~VGD~~gr~~~~~~~~~~d~s~~D~~~  172 (369)
                                          ....||.   -|-|..+.+.+    +..-.+++||||..               .+||.-
T Consensus       250 F~~~~~~~~v~~~~g~l~~~~~~~~~~vY~gGn~~~l~~ll----g~~g~~VLY~GDhi---------------~~Di~~  310 (458)
T d2bdea1         250 FYDNLRFLSVNPENGTMTNVHGPIVPGVYQGGNAKKFTEDL----GVGGDEILYIGDHI---------------YGDILR  310 (458)
T ss_dssp             HHSCCCEEEECTTTCCEEECCSCCCSEEEEECCHHHHHHHT----TCCGGGEEEEESSC---------------CSCHHH
T ss_pred             cCCCCcceEEeCCCCccccCCccccCCccccCCHHHHHHHh----CCCCCcEEEECCcc---------------chhhhh
Confidence                                1112221   34555565543    55567999999998               389888


Q ss_pred             HH-hCCCCccC
Q psy4598         173 AF-NLNLAFFT  182 (369)
Q Consensus       173 A~-n~Gi~f~~  182 (369)
                      ++ ..|.++..
T Consensus       311 ~kk~~gWrT~~  321 (458)
T d2bdea1         311 LKKDCNWRTAL  321 (458)
T ss_dssp             HHHHHCSEEEE
T ss_pred             hhhhcCCceEE
Confidence            75 57888843

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.57  E-value=0.032  Score=45.26  Aligned_cols=22  Identities=23%  Similarity=0.492  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .|.++|.||+|||||.++|...
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999853

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=95.48  E-value=0.0035  Score=49.75  Aligned_cols=20  Identities=20%  Similarity=0.494  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |+++|.||||||||.++|..
T Consensus         3 ivlvG~~~vGKSsLi~~l~~   22 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKL   22 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            68999999999999999974

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.41  E-value=0.0031  Score=53.69  Aligned_cols=22  Identities=27%  Similarity=0.356  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~  294 (369)
                      .++++.|+|||||||++.+++.
T Consensus        35 ~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          35 SITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTT
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            6899999999999999999864

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.37  E-value=0.0035  Score=58.23  Aligned_cols=34  Identities=32%  Similarity=0.497  Sum_probs=27.0

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDT  305 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~  305 (369)
                      +.-|+|+||+|+|||-+|++|++..+..++-.|.
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~~~~~~~ir~D~  101 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDA  101 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred             CcceeeeCCCCccHHHHHHHHHhhcccceeehhh
Confidence            4568999999999999999999987655444443

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.35  E-value=0.018  Score=48.56  Aligned_cols=28  Identities=21%  Similarity=0.398  Sum_probs=22.7

Q ss_pred             cccccEEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         268 KAALDSVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       268 ~~~~~~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .+..+.-++|+|+||+|||++++.|+++
T Consensus        39 ~r~~k~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          39 QRRTKNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             TSSSSCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             hccCCCCeEEEecCCcccHHHHHHHHHH
Confidence            3333456799999999999999999975

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.34  E-value=0.0043  Score=53.27  Aligned_cols=22  Identities=27%  Similarity=0.437  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~  294 (369)
                      .++++.|+|||||||++-+++.
T Consensus        37 ~~~li~G~pGsGKT~~~lq~~~   58 (254)
T d1pzna2          37 AITEVFGEFGSGKTQLAHTLAV   58 (254)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            6899999999999999998864

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.33  E-value=0.0027  Score=53.11  Aligned_cols=22  Identities=18%  Similarity=0.416  Sum_probs=19.2

Q ss_pred             ceEEEEEcCCCCCcchhhhhcc
Q psy4598         223 KQVLIMIGSQGSGKSSFVSTYL  244 (369)
Q Consensus       223 ~~i~v~~g~~~~gks~~~~~~~  244 (369)
                      +.|++++|+|||||||+++.+.
T Consensus         2 p~li~l~GlpgsGKSTla~~L~   23 (213)
T d1bifa1           2 PTLIVMVGLPARGKTYISKKLT   23 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            4688999999999999998754

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.32  E-value=0.0014  Score=54.69  Aligned_cols=37  Identities=22%  Similarity=0.507  Sum_probs=28.7

Q ss_pred             CCceEEEEEcCCCCCcchhhhhccCCCcccccccccc
Q psy4598         221 DKKQVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  257 (369)
Q Consensus       221 ~~~~i~v~~g~~~~gks~~~~~~~~~~~~~~i~r~~~  257 (369)
                      +++.+++++|+|||||||.++.+...-|+..++-+.+
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~g~~~i~~g~~   40 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDL   40 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHCCceEchhhH
Confidence            4567889999999999999997765557766665444

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.28  E-value=0.0029  Score=52.87  Aligned_cols=35  Identities=20%  Similarity=0.489  Sum_probs=27.9

Q ss_pred             CCCceEEEEEcCCCCCcchhhhhccCCCccccccc
Q psy4598         220 HDKKQVLIMIGSQGSGKSSFVSTYLKPLNYTTVNR  254 (369)
Q Consensus       220 ~~~~~i~v~~g~~~~gks~~~~~~~~~~~~~~i~r  254 (369)
                      +.+..|++++|+|||||||.++.+...-|+..|+-
T Consensus         5 ~~~~~iI~i~GppGSGKsT~a~~La~~~g~~~is~   39 (196)
T d1ukza_           5 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA   39 (196)
T ss_dssp             TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEeh
Confidence            35677889999999999999998765557766664

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=95.18  E-value=0.061  Score=47.37  Aligned_cols=60  Identities=18%  Similarity=0.349  Sum_probs=42.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCc-ch--------------------hHHHHHHHHHHHHhCC--
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDT-LG--------------------SWQKCVSVMKAALDSG--  323 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~-~~--------------------~~~~~~~~~~~~l~~g--  323 (369)
                      ..++.+.|+||||||+++-.++...     .+.+|+... +.                    ..+...+.+...++.+  
T Consensus        57 g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~~~~~~~a~~~Gvd~d~i~~~~~~~~E~~~~~~~~l~~~~~~  136 (268)
T d1xp8a1          57 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAI  136 (268)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCC
T ss_pred             ceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCccCCHHHHHHhCCCchhEEEEcCCCHHHHHHHHHHHHhcCCC
Confidence            3578999999999999999887642     477888764 21                    2445556666666554  


Q ss_pred             CcEEEeCC
Q psy4598         324 LSVVVDNT  331 (369)
Q Consensus       324 ~~vIiD~t  331 (369)
                      ..+|||..
T Consensus       137 ~liIiDSi  144 (268)
T d1xp8a1         137 DVVVVDSV  144 (268)
T ss_dssp             SEEEEECT
T ss_pred             cEEEEecc
Confidence            36888865

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.15  E-value=0.035  Score=46.77  Aligned_cols=84  Identities=19%  Similarity=0.180  Sum_probs=48.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCC------------------------------cEEEeCCcch-------hHHHHHHHH
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLN------------------------------YTTVNRDTLG-------SWQKCVSVM  316 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~------------------------------~~~i~~D~~~-------~~~~~~~~~  316 (369)
                      -|.++|.+++|||||..+|....+                              ...+..+...       -+..+...+
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~df~~~~   84 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYIKNM   84 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCchhhHHHH
Confidence            378899999999999999952210                              0011111100       133344555


Q ss_pred             HHHHhC--CCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEE
Q psy4598         317 KAALDS--GLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHM  357 (369)
Q Consensus       317 ~~~l~~--g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l  357 (369)
                      ..+++.  +-.+|||+...-..+-.+...+|...|++..+|++
T Consensus        85 ~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~i  127 (204)
T d2c78a3          85 ITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFM  127 (204)
T ss_dssp             HHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             HHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEE
Confidence            555543  33567898655444444566778889987555554

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.14  E-value=0.004  Score=52.98  Aligned_cols=89  Identities=11%  Similarity=0.119  Sum_probs=52.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCC--------------------------cEEEeCCcch---hHHHHHHHHHHHHh-
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLN--------------------------YTTVNRDTLG---SWQKCVSVMKAALD-  321 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~--------------------------~~~i~~D~~~---~~~~~~~~~~~~l~-  321 (369)
                      |..+++.|+||+||||+|+.+++.+.                          ...+..+.-.   ..+. .+.+.+.+. 
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~-ir~l~~~~~~  102 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGKNTLGVDA-VREVTEKLNE  102 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTCSSBCHHH-HHHHHHHTTS
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHhcccccccccccccccchhhhhhhccccccchhhhhhcccccccch-hhHHhhhhhh
Confidence            56789999999999999999987531                          1222211110   0112 122222221 


Q ss_pred             -----CCCcEEEeCC-CCCHHHHHHHHHHHHhcCCeEEEEEEeCCH
Q psy4598         322 -----SGLSVVVDNT-NPDKESRHRYIEAAKQHGVRCIAVHMNISK  361 (369)
Q Consensus       322 -----~g~~vIiD~t-n~~~~~r~~~~~la~~~~~~v~~v~l~~~~  361 (369)
                           ..+.+|+|.. ..+......+++...+..-.+.++.+.-..
T Consensus       103 ~~~~~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~  148 (207)
T d1a5ta2         103 HARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREP  148 (207)
T ss_dssp             CCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCG
T ss_pred             ccccCccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeecCh
Confidence                 1235777754 346777788888888776666666665443

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=95.12  E-value=0.019  Score=48.40  Aligned_cols=89  Identities=8%  Similarity=0.101  Sum_probs=55.6

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC--------CcEEEeCCc--ch--hHHHHHHHHHHHH--hCCCcEEEeC-CCCCHH
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL--------NYTTVNRDT--LG--SWQKCVSVMKAAL--DSGLSVVVDN-TNPDKE  336 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~--------~~~~i~~D~--~~--~~~~~~~~~~~~l--~~g~~vIiD~-tn~~~~  336 (369)
                      +.-+++.|+||+|||++|..+++..        +...|..+.  ++  .-+.+.+.+....  ...+.+|+|. -.++.+
T Consensus        15 ~~~~l~~G~~g~gk~~~a~~l~~~i~~~~~~h~D~~~i~~~~~~I~Id~IR~i~~~~~~~~~~~~~KviIId~ad~l~~~   94 (198)
T d2gnoa2          15 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQ   94 (198)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHhccccCCCCEEEEeCCcCCCCHHHHHHHHHHHhhCcccCCCEEEEEeCccccchh
Confidence            5678999999999999999988742        456666542  21  1222222221111  1223677764 456788


Q ss_pred             HHHHHHHHHHhcCCeEEEEEEeCC
Q psy4598         337 SRHRYIEAAKQHGVRCIAVHMNIS  360 (369)
Q Consensus       337 ~r~~~~~la~~~~~~v~~v~l~~~  360 (369)
                      ....+++...+..-.++++.+.-.
T Consensus        95 aqNaLLK~LEEPp~~t~fiLit~~  118 (198)
T d2gnoa2          95 AANAFLKALEEPPEYAVIVLNTRR  118 (198)
T ss_dssp             HHHHTHHHHHSCCTTEEEEEEESC
T ss_pred             hhhHHHHHHhCCCCCceeeeccCC
Confidence            888899988876666666655433

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=95.03  E-value=0.0085  Score=48.85  Aligned_cols=26  Identities=19%  Similarity=0.439  Sum_probs=23.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLN  297 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~  297 (369)
                      ..+|+|.|.-|||||||++.+++.++
T Consensus        33 g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          33 AIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEecCCCccHHHHHHHHHhhcc
Confidence            46899999999999999999998753

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=95.00  E-value=0.043  Score=47.50  Aligned_cols=24  Identities=21%  Similarity=0.451  Sum_probs=21.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      .++-+.||+||||||+.+.+.-..
T Consensus        29 ei~glvG~nGaGKSTLl~~l~G~~   52 (238)
T d1vpla_          29 EIFGLIGPNGAGKTTTLRIISTLI   52 (238)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            578899999999999999998653

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.00  E-value=0.0073  Score=51.65  Aligned_cols=22  Identities=18%  Similarity=0.256  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~  294 (369)
                      .++++.|+||||||++|.+++.
T Consensus        38 ~~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          38 AITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             EEEEEECCTTCTHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            6899999999999999999974

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=94.98  E-value=0.029  Score=48.96  Aligned_cols=33  Identities=21%  Similarity=0.285  Sum_probs=25.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc------CCcEEEeCCc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP------LNYTTVNRDT  305 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~------~~~~~i~~D~  305 (369)
                      .++++.|+||+|||+++..++..      .++.+++.+.
T Consensus        36 ~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~s~E~   74 (277)
T d1cr2a_          36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE   74 (277)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEeeecc
Confidence            68999999999999999888743      2456777553

>d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Pyrimidine 5'-nucleotidase (UMPH-1)
domain: Cytosolic 5'-nucleotidase III
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.90  E-value=0.011  Score=52.93  Aligned_cols=41  Identities=20%  Similarity=0.297  Sum_probs=36.0

Q ss_pred             ccccHHHHHHHHHHCCcEEEEEecCCCcCCCCCCHHHHHHHHHHHHHHcCCCe
Q psy4598          55 LFSNIESVLKQYLDDGYKLVIFTNQGAIGRKKMSTRDFQAKAEKIIKSLNVPV  107 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G~~i~i~TNq~gi~~~~~~~~~~~~~i~~~l~~l~i~~  107 (369)
                      +.||+.+.++.|+++|++++|+|.  |          +...++.+++++|++.
T Consensus       136 Lr~G~~e~~~~l~~~~i~~~IvSg--G----------~~~~ie~vl~~lg~~~  176 (291)
T d2bdua1         136 LKEGYENFFGKLQQHGIPVFIFSA--G----------IGDVLEEVIRQAGVYH  176 (291)
T ss_dssp             BCBTHHHHHHHHHHHTCCEEEEEE--E----------EHHHHHHHHHHTTCCB
T ss_pred             cccCHHHHHHHHHHcCCeEEEEcC--C----------hHHHHHHHHHHcCCCc
Confidence            679999999999999999999998  4          4567889999999864

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=94.87  E-value=0.0063  Score=49.33  Aligned_cols=21  Identities=19%  Similarity=0.520  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~  295 (369)
                      |+++|.||||||||..+|...
T Consensus        18 I~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          18 VIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHhcC
Confidence            789999999999999999864

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.86  E-value=0.0034  Score=57.19  Aligned_cols=22  Identities=32%  Similarity=0.591  Sum_probs=20.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhccC
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~  296 (369)
                      |+|.|+||+||||+|+.++..+
T Consensus        31 vLl~G~pG~GKT~lar~~~~iL   52 (333)
T d1g8pa_          31 VLVFGDRGTGKSTAVRALAALL   52 (333)
T ss_dssp             EEEECCGGGCTTHHHHHHHHHS
T ss_pred             EEEECCCCccHHHHHHHHHHhC
Confidence            7999999999999999998654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.78  E-value=0.0074  Score=47.58  Aligned_cols=21  Identities=19%  Similarity=0.507  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~  295 (369)
                      |+|+|.|++|||||..+|...
T Consensus         3 I~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            689999999999999999864

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=94.78  E-value=0.0047  Score=49.84  Aligned_cols=37  Identities=24%  Similarity=0.363  Sum_probs=27.2

Q ss_pred             ceEEEEEcCCCCCcchhhhhccCCCc--ccccccccccc
Q psy4598         223 KQVLIMIGSQGSGKSSFVSTYLKPLN--YTTVNRDTLGS  259 (369)
Q Consensus       223 ~~i~v~~g~~~~gks~~~~~~~~~~~--~~~i~r~~~~~  259 (369)
                      -.|+++.|+|||||||+++......|  +..++.|.++.
T Consensus         4 g~iI~l~G~~GsGKSTia~~La~~lg~~~~~~~~d~~~~   42 (176)
T d1zp6a1           4 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWG   42 (176)
T ss_dssp             TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEecHHHHHH
Confidence            46888999999999999987665544  44566665543

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=94.74  E-value=0.0077  Score=47.90  Aligned_cols=21  Identities=19%  Similarity=0.518  Sum_probs=19.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhcc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~  295 (369)
                      |+++|.||+|||||.+++...
T Consensus         8 I~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999754

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=94.71  E-value=0.01  Score=54.19  Aligned_cols=37  Identities=24%  Similarity=0.362  Sum_probs=27.6

Q ss_pred             ccccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCc
Q psy4598         269 AALDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDT  305 (369)
Q Consensus       269 ~~~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~  305 (369)
                      ......|-++|+||||||||..+|...+     .+.++..|.
T Consensus        51 ~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDp   92 (327)
T d2p67a1          51 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP   92 (327)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred             cCCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCC
Confidence            3456789999999999999999997642     344555443

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=94.66  E-value=0.0077  Score=48.41  Aligned_cols=21  Identities=24%  Similarity=0.589  Sum_probs=19.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~  295 (369)
                      |+++|+||||||||.++|...
T Consensus         5 i~ivG~~~~GKTsLi~~l~~~   25 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNGE   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEECCCCCCHHHHHHHHcCC
Confidence            789999999999999999764

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.60  E-value=0.0068  Score=49.06  Aligned_cols=22  Identities=18%  Similarity=0.459  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~  295 (369)
                      =|+|+|.||+|||||..+|...
T Consensus        15 kI~lvG~~~vGKTsLl~~l~~~   36 (186)
T d1f6ba_          15 KLVFLGLDNAGKTTLLHMLKDD   36 (186)
T ss_dssp             EEEEEEETTSSHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999764

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=94.55  E-value=0.0069  Score=55.01  Aligned_cols=38  Identities=16%  Similarity=0.326  Sum_probs=27.7

Q ss_pred             ccccE-EEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcc
Q psy4598         269 AALDS-VLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTL  306 (369)
Q Consensus       269 ~~~~~-lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~  306 (369)
                      +..|. .++++||+|+|||.+|+.|++.+     +...++.-.+
T Consensus        49 ~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~~~~   92 (315)
T d1qvra3          49 PNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEY   92 (315)
T ss_dssp             SSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTC
T ss_pred             CCCCceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEecccc
Confidence            34453 67899999999999999999864     3445554333

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.55  E-value=0.013  Score=53.37  Aligned_cols=37  Identities=19%  Similarity=0.205  Sum_probs=28.1

Q ss_pred             ccccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCc
Q psy4598         269 AALDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDT  305 (369)
Q Consensus       269 ~~~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~  305 (369)
                      ......|=++|+||+|||||..+|.+.+     ..-+|..|.
T Consensus        48 ~~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDp   89 (323)
T d2qm8a1          48 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDP   89 (323)
T ss_dssp             CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECG
T ss_pred             cCCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeeccc
Confidence            3445789999999999999999998642     455555554

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.54  E-value=0.0096  Score=50.43  Aligned_cols=23  Identities=30%  Similarity=0.348  Sum_probs=21.1

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~  294 (369)
                      -.++++.|+||+|||+++.+++.
T Consensus        34 G~l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          34 QSVTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             TEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHH
Confidence            37999999999999999999985

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.49  E-value=0.0098  Score=49.48  Aligned_cols=23  Identities=30%  Similarity=0.520  Sum_probs=20.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      +.|+|+|+|++|||||..+|...
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46789999999999999999754

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.45  E-value=0.039  Score=50.21  Aligned_cols=24  Identities=21%  Similarity=0.430  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccCC
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPLN  297 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~~  297 (369)
                      .|.+-|+-||||||+++.|++.++
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~   30 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFA   30 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            488999999999999999998763

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=94.45  E-value=0.0075  Score=51.08  Aligned_cols=23  Identities=26%  Similarity=0.416  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++.+.|++||||||+.+.++..
T Consensus        28 ei~~l~G~NGsGKSTLl~~i~gl   50 (200)
T d1sgwa_          28 NVVNFHGPNGIGKTTLLKTISTY   50 (200)
T ss_dssp             CCEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCChHHHHHHHHhcc
Confidence            57889999999999999999864

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.41  E-value=0.0091  Score=50.30  Aligned_cols=34  Identities=21%  Similarity=0.291  Sum_probs=25.3

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhcc------CCcEEEeCCc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKP------LNYTTVNRDT  305 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~------~~~~~i~~D~  305 (369)
                      ..++++.|+||||||+++.+++..      ....+++.+.
T Consensus        26 G~~~~I~G~~G~GKT~la~~~~~~~~~~~~~~~~~~s~e~   65 (242)
T d1tf7a1          26 GRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE   65 (242)
T ss_dssp             TSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred             CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCcccccccC
Confidence            368899999999999999886532      2455666553

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=94.36  E-value=0.015  Score=51.18  Aligned_cols=38  Identities=24%  Similarity=0.310  Sum_probs=30.9

Q ss_pred             ccccccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCC
Q psy4598         267 MKAALDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRD  304 (369)
Q Consensus       267 ~~~~~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D  304 (369)
                      ...+||++|+++|-=|+||||+|..|+..+     ....|+.|
T Consensus         3 ~~~~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~G~rVLlvD~D   45 (296)
T d1ihua1           3 FLQNIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTD   45 (296)
T ss_dssp             GGSSCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             cCCCCCeEEEEECCCcChHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence            346789999999999999999888877643     56778888

>d1wpga2 c.108.1.7 (A:344-360,A:600-750) Calcium ATPase, catalytic domain P {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Meta-cation ATPase, catalytic domain P
domain: Calcium ATPase, catalytic domain P
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.35  E-value=0.13  Score=41.86  Aligned_cols=42  Identities=21%  Similarity=0.324  Sum_probs=34.2

Q ss_pred             eEEEEecCCceeecCCCCCCCCCccccccccccHHHHHHHHHHCCcEEEEEec
Q psy4598          26 KIASFDLDGTLITTKSGKVFPVDTHDWKLLFSNIESVLKQYLDDGYKLVIFTN   78 (369)
Q Consensus        26 k~~~fDlDgTLi~~~sg~~~~~~~~d~~~~~p~v~~~L~~L~~~G~~i~i~TN   78 (369)
                      -++.||.+|||....        . |  .+-|+++++|+.|++.|+++.++|-
T Consensus         3 ~~~~~d~~~~~~~~~--------~-D--p~R~~~~~~I~~l~~~GI~v~miTG   44 (168)
T d1wpga2           3 SVICSDKTGTLTTNQ--------L-D--PPRKEVMGSIQLCRDAGIRVIMITG   44 (168)
T ss_dssp             CEEEECCTTTTBCCC--------E-C--CBCTTHHHHHHHHHHTTCEEEEECS
T ss_pred             EEEEECCccEEEEEe--------c-C--CCchhHHHHHHHHHHCcCEEEEECC
Confidence            467889999987432        1 2  2578999999999999999999996

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=94.32  E-value=0.056  Score=48.92  Aligned_cols=23  Identities=26%  Similarity=0.650  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccC
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      -|+++|++||||||+.++|....
T Consensus       168 nili~G~tgSGKTT~l~al~~~i  190 (323)
T d1g6oa_         168 NVIVCGGTGSGKTTYIKSIMEFI  190 (323)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGGS
T ss_pred             CEEEEeeccccchHHHHHHhhhc
Confidence            37899999999999999999864

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.31  E-value=0.01  Score=48.36  Aligned_cols=20  Identities=25%  Similarity=0.463  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |+|+|.|++|||||..+|..
T Consensus         3 I~lvG~~nvGKSsLin~l~~   22 (184)
T d2cxxa1           3 IIFAGRSNVGKSTLIYRLTG   22 (184)
T ss_dssp             EEEEEBTTSSHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999999974

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=94.29  E-value=0.064  Score=43.46  Aligned_cols=36  Identities=17%  Similarity=0.218  Sum_probs=25.2

Q ss_pred             cEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCC
Q psy4598         325 SVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNIS  360 (369)
Q Consensus       325 ~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~  360 (369)
                      .+++|........-..+...++..+.++.++.-.++
T Consensus        96 i~v~d~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D  131 (186)
T d1mkya2          96 VIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWD  131 (186)
T ss_dssp             EEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGG
T ss_pred             EEeecccccchhhHHHHHHHHHHcCCceeeeccchh
Confidence            456787765555666677778888888877766554

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=94.22  E-value=0.0033  Score=49.71  Aligned_cols=32  Identities=25%  Similarity=0.451  Sum_probs=23.3

Q ss_pred             EEEEEcCCCCCcchhhhhccCCCccccccccc
Q psy4598         225 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDT  256 (369)
Q Consensus       225 i~v~~g~~~~gks~~~~~~~~~~~~~~i~r~~  256 (369)
                      .++++|++||||||+++.+....++..++.+.
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~~~~id~~~   35 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ   35 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTTCEEEEHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhCCCeEeech
Confidence            46778999999999999765545665554443

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=94.16  E-value=0.011  Score=52.07  Aligned_cols=23  Identities=43%  Similarity=0.602  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++-++|++||||||+++.+.-.
T Consensus        29 Ei~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          29 DVISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHHcC
Confidence            57899999999999999999764

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=94.15  E-value=0.0044  Score=51.67  Aligned_cols=36  Identities=22%  Similarity=0.528  Sum_probs=28.0

Q ss_pred             CCceEEEEEcCCCCCcchhhhhccCCCccccccccc
Q psy4598         221 DKKQVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDT  256 (369)
Q Consensus       221 ~~~~i~v~~g~~~~gks~~~~~~~~~~~~~~i~r~~  256 (369)
                      ++..+++++|+|||||||.++.+...-|+..|+-..
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~~~g~~~is~g~   41 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGD   41 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHHHTCCEEEEHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHhCCeeEeccH
Confidence            356788899999999999999876656776666444

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.12  E-value=0.016  Score=49.68  Aligned_cols=23  Identities=26%  Similarity=0.548  Sum_probs=20.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      ++++++|..||||||+.+.+.+.
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhc
Confidence            68899999999999999998765

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.11  E-value=0.011  Score=52.66  Aligned_cols=24  Identities=42%  Similarity=0.623  Sum_probs=21.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      .++.++|++||||||+.+.+...+
T Consensus        63 e~vaivG~nGsGKSTLl~~i~Gl~   86 (281)
T d1r0wa_          63 EMLAITGSTGSGKTSLLMLILGEL   86 (281)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred             CEEEEECCCCChHHHHHHHHhCCC
Confidence            578999999999999999998653

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.06  E-value=0.013  Score=48.09  Aligned_cols=20  Identities=35%  Similarity=0.805  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |+|+|.||+|||||.+++..
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            68899999999999999975

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.05  E-value=0.013  Score=47.06  Aligned_cols=20  Identities=35%  Similarity=0.750  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |+|+|.||+|||||..++..
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999875

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=93.97  E-value=0.014  Score=46.47  Aligned_cols=20  Identities=25%  Similarity=0.526  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |+++|.|++|||||.++|..
T Consensus         4 I~lvG~~nvGKSsLin~l~~   23 (161)
T d2gj8a1           4 VVIAGRPNAGKSSLLNALAG   23 (161)
T ss_dssp             EEEEESTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            68999999999999999964

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.93  E-value=0.014  Score=47.35  Aligned_cols=20  Identities=35%  Similarity=0.688  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |+++|.||+|||||..++..
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            67899999999999999874

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=93.92  E-value=0.085  Score=45.42  Aligned_cols=99  Identities=11%  Similarity=0.073  Sum_probs=61.5

Q ss_pred             cccccccchhhhhhhccccccEEEEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCCcchhHHHHHHHHHHHHh-CCCc
Q psy4598         252 VNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRDTLGSWQKCVSVMKAALD-SGLS  325 (369)
Q Consensus       252 i~r~~~~~~~~~~~~~~~~~~~lIll~G~pGSGKSTla~~L~~~-----~~~~~i~~D~~~~~~~~~~~~~~~l~-~g~~  325 (369)
                      .+.+....++.....+..+.+...+|+|..|||||-++-..+..     ..+.++-....-+ ......+++.+. -+..
T Consensus        56 lt~~Q~~~~~~i~~~~~~~~~~~~LL~GdvGsGKT~V~~~a~~~~~~~g~qv~~l~Pt~~La-~Q~~~~~~~~~~~~~~~  134 (233)
T d2eyqa3          56 TTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLA-QQHYDNFRDRFANWPVR  134 (233)
T ss_dssp             CCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHH-HHHHHHHHHHSTTTTCC
T ss_pred             cchhHHHHHHHHHHHHhccCccCeEEEcCCCCCcHHHHHHHHHHHHHcCCceEEEccHHHhH-HHHHHHHHHHHhhCCCE
Confidence            34455667777888889999999999999999999998877654     2344555544322 222333333332 3555


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHhcCCe
Q psy4598         326 VVVDNTNPDKESRHRYIEAAKQHGVR  351 (369)
Q Consensus       326 vIiD~tn~~~~~r~~~~~la~~~~~~  351 (369)
                      |.+=..+.+...|......+......
T Consensus       135 v~~l~~~~~~~~~~~~~~~~~~g~~~  160 (233)
T d2eyqa3         135 IEMISRFRSAKEQTQILAEVAEGKID  160 (233)
T ss_dssp             EEEESTTSCHHHHHHHHHHHHTTCCS
T ss_pred             EEeccCcccchhHHHHHHHHhCCCCC
Confidence            65556666666666655544444333

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.91  E-value=0.0075  Score=52.28  Aligned_cols=40  Identities=25%  Similarity=0.407  Sum_probs=30.7

Q ss_pred             CCCceEEEEEcCCCCCcchhhhhccCC--Ccccccccccccc
Q psy4598         220 HDKKQVLIMIGSQGSGKSSFVSTYLKP--LNYTTVNRDTLGS  259 (369)
Q Consensus       220 ~~~~~i~v~~g~~~~gks~~~~~~~~~--~~~~~i~r~~~~~  259 (369)
                      .+.+..++++|+||+|||++++.....  .++..+|-+.++.
T Consensus        29 ~~~P~~ilL~GpPGtGKT~la~~la~~~~~~~~~i~~d~~~~   70 (273)
T d1gvnb_          29 VESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQ   70 (273)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHT
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhhcceEEEecHHHHH
Confidence            445667889999999999999965432  3678888777664

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.85  E-value=0.015  Score=46.99  Aligned_cols=20  Identities=35%  Similarity=0.760  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |+++|.+|+|||||..++..
T Consensus         8 i~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999999974

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.84  E-value=0.011  Score=50.05  Aligned_cols=35  Identities=17%  Similarity=0.364  Sum_probs=28.1

Q ss_pred             cccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEe
Q psy4598         268 KAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVN  302 (369)
Q Consensus       268 ~~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~  302 (369)
                      ..|.+..|++.|||++|||+++.+|.+-++-..++
T Consensus        49 ~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~vis   83 (205)
T d1tuea_          49 GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVIS   83 (205)
T ss_dssp             TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECC
T ss_pred             CCCCceEEEEECCCCccHHHHHHHHHHHhCCEEEe
Confidence            34666899999999999999999998876544443

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=93.80  E-value=0.016  Score=46.58  Aligned_cols=21  Identities=38%  Similarity=0.562  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhcc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~  295 (369)
                      |+|.|++|+|||||..++...
T Consensus         5 i~i~G~~~~GKTsLl~~l~~~   25 (164)
T d1zd9a1           5 LTLVGLQYSGKTTFVNVIASG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            678899999999999999754

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=93.73  E-value=0.01  Score=47.24  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=18.7

Q ss_pred             eEEEEEcCCCCCcchhhhhccC
Q psy4598         224 QVLIMIGSQGSGKSSFVSTYLK  245 (369)
Q Consensus       224 ~i~v~~g~~~~gks~~~~~~~~  245 (369)
                      .++++.|+|||||||+++.+..
T Consensus         3 klI~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5788999999999999986553

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=93.72  E-value=0.0041  Score=49.97  Aligned_cols=32  Identities=19%  Similarity=0.383  Sum_probs=23.8

Q ss_pred             EEEEcCCCCCcchhhhhccCCCcccccccccc
Q psy4598         226 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  257 (369)
Q Consensus       226 ~v~~g~~~~gks~~~~~~~~~~~~~~i~r~~~  257 (369)
                      +++.|+|||||||+++.+....||..++-+..
T Consensus         7 I~i~G~pGsGKTTia~~La~~l~~~~i~~~~~   38 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASKSGLKYINVGDL   38 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCcEEechHH
Confidence            45789999999999987655457766654444

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.71  E-value=0.0064  Score=50.38  Aligned_cols=31  Identities=23%  Similarity=0.514  Sum_probs=24.2

Q ss_pred             eEEEEEcCCCCCcchhhhhccCCCccccccc
Q psy4598         224 QVLIMIGSQGSGKSSFVSTYLKPLNYTTVNR  254 (369)
Q Consensus       224 ~i~v~~g~~~~gks~~~~~~~~~~~~~~i~r  254 (369)
                      -+++++|+|||||||.++.....-|+..|+-
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~g~~~i~~   32 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSA   32 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhCCceEcH
Confidence            4678899999999999987665557766643

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.71  E-value=0.016  Score=48.37  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~  295 (369)
                      -|+|+|+|+||||||..+|...
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~   23 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTG   23 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4899999999999999999753

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.70  E-value=0.016  Score=47.03  Aligned_cols=20  Identities=30%  Similarity=0.843  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |+|+|.||+|||||.+++..
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999874

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.66  E-value=0.019  Score=46.19  Aligned_cols=20  Identities=30%  Similarity=0.695  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |+|+|.+|+|||||..++..
T Consensus         6 i~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78899999999999999875

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.64  E-value=0.072  Score=46.90  Aligned_cols=34  Identities=15%  Similarity=0.250  Sum_probs=26.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDT  305 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~  305 (369)
                      ..++.+.|+|||||||++-.++...     .+++|+...
T Consensus        60 g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~   98 (269)
T d1mo6a1          60 GRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH   98 (269)
T ss_dssp             SSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             ceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc
Confidence            3578999999999999998876542     367777765

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=93.64  E-value=0.017  Score=51.12  Aligned_cols=23  Identities=39%  Similarity=0.502  Sum_probs=20.5

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhc
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~  294 (369)
                      ..+|.+.|++|.||||+|+.+..
T Consensus        44 ~~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          44 SFFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999999864

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.62  E-value=0.016  Score=46.62  Aligned_cols=21  Identities=29%  Similarity=0.752  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~  295 (369)
                      |+++|.||+|||||.+++...
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            689999999999999998753

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.51  E-value=0.019  Score=46.68  Aligned_cols=20  Identities=35%  Similarity=0.830  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |+++|.+|+|||||..++..
T Consensus         7 i~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999865

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=93.50  E-value=0.016  Score=46.36  Aligned_cols=24  Identities=17%  Similarity=0.299  Sum_probs=19.1

Q ss_pred             CCceEEEEEcCCCCCcchhhhhcc
Q psy4598         221 DKKQVLIMIGSQGSGKSSFVSTYL  244 (369)
Q Consensus       221 ~~~~i~v~~g~~~~gks~~~~~~~  244 (369)
                      ++--+++++|+|||||||+++.+.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La   27 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQ   27 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHH
Confidence            344677799999999999998543

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=93.50  E-value=0.17  Score=42.10  Aligned_cols=82  Identities=20%  Similarity=0.210  Sum_probs=47.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhcc-----------------------CCc------EEEeCCcc-------hhHHHHHHHHHH
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKP-----------------------LNY------TTVNRDTL-------GSWQKCVSVMKA  318 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~-----------------------~~~------~~i~~D~~-------~~~~~~~~~~~~  318 (369)
                      |.++|.+.+|||||+.+|...                       .+.      ..+.....       -.+..+......
T Consensus         6 i~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~~~~~   85 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVKNMIT   85 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcchHHHHHHHHH
Confidence            789999999999999988631                       011      01110000       014455555555


Q ss_pred             HHhC--CCcEEEeCCCC-CHHHHHHHHHHHHhcCCeEEEEEE
Q psy4598         319 ALDS--GLSVVVDNTNP-DKESRHRYIEAAKQHGVRCIAVHM  357 (369)
Q Consensus       319 ~l~~--g~~vIiD~tn~-~~~~r~~~~~la~~~~~~v~~v~l  357 (369)
                      .+..  +-.+|||+... ..+.+ +...+|...+.+..+|.+
T Consensus        86 ~~~~aD~allVVda~~G~~~QT~-~~~~~a~~~~~~~iIv~i  126 (196)
T d1d2ea3          86 GTAPLDGCILVVAANDGPMPQTR-EHLLLARQIGVEHVVVYV  126 (196)
T ss_dssp             TSSCCSEEEEEEETTTCSCHHHH-HHHHHHHHTTCCCEEEEE
T ss_pred             HHhhcCeEEEEEEcCCCCchhHH-HHHHHHHHhcCCcEEEEE
Confidence            5533  33567888764 44444 445667777876545544

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=93.49  E-value=0.023  Score=48.48  Aligned_cols=58  Identities=12%  Similarity=0.189  Sum_probs=39.3

Q ss_pred             EEEEcCCCCCcchhhhhccCCCcccccccccccchhhhhhhccccccEEEEEEcCCCCcHHHHHHHHhccCCcEEEeCCc
Q psy4598         226 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDT  305 (369)
Q Consensus       226 ~v~~g~~~~gks~~~~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~~lIll~G~pGSGKSTla~~L~~~~~~~~i~~D~  305 (369)
                      .++.|+||+|||++++-+..+.++                       ..+.+.|.....+..++..+........+--|.
T Consensus        38 ~L~~GPpGtGKT~lA~~la~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ide   94 (238)
T d1in4a2          38 VLLAGPPGLGKTTLAHIIASELQT-----------------------NIHVTSGPVLVKQGDMAAILTSLERGDVLFIDE   94 (238)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHHTC-----------------------CEEEEETTTCCSHHHHHHHHHHCCTTCEEEEET
T ss_pred             EEEECCCCCcHHHHHHHHHhccCC-----------------------CcccccCcccccHHHHHHHHHhhccCCchHHHH
Confidence            578999999999999976543333                       345678888888877777776543323333444


Q ss_pred             c
Q psy4598         306 L  306 (369)
Q Consensus       306 ~  306 (369)
                      +
T Consensus        95 ~   95 (238)
T d1in4a2          95 I   95 (238)
T ss_dssp             G
T ss_pred             H
Confidence            4

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=93.48  E-value=0.024  Score=45.80  Aligned_cols=23  Identities=13%  Similarity=0.439  Sum_probs=20.3

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .=|+++|.||+|||||.+++...
T Consensus        17 ~kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          17 VRILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            45899999999999999999653

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.44  E-value=0.02  Score=46.35  Aligned_cols=20  Identities=35%  Similarity=0.851  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |+++|.||+|||||..++..
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            68999999999999999864

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.37  E-value=0.019  Score=46.39  Aligned_cols=20  Identities=30%  Similarity=0.788  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |+|+|.+|+|||||.+++..
T Consensus         8 i~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999999975

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=93.37  E-value=0.014  Score=47.27  Aligned_cols=22  Identities=18%  Similarity=0.391  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~  295 (369)
                      =|+++|.||+||||+.+++...
T Consensus        14 kIvlvG~~~vGKTSli~rl~~~   35 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKLG   35 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999999754

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.31  E-value=0.02  Score=50.25  Aligned_cols=23  Identities=35%  Similarity=0.595  Sum_probs=20.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .++-|+||+||||||+.+.+.-.
T Consensus        31 ei~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          31 DVTLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHHCC
Confidence            58899999999999999999764

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=93.30  E-value=0.015  Score=47.50  Aligned_cols=22  Identities=18%  Similarity=0.459  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~  295 (369)
                      =|+++|.||+|||||.+++...
T Consensus        19 KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          19 RILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             EEEEEEETTSSHHHHHHHTCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999999653

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.26  E-value=0.022  Score=45.98  Aligned_cols=20  Identities=40%  Similarity=0.777  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |+|+|.+|+|||||..++..
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999999984

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=93.24  E-value=0.025  Score=45.70  Aligned_cols=21  Identities=24%  Similarity=0.548  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~  294 (369)
                      .|.|+|.|++|||||.++|..
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            589999999999999999975

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.22  E-value=0.022  Score=45.71  Aligned_cols=20  Identities=35%  Similarity=0.715  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |+++|.||+|||||.+++..
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68889999999999999874

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.20  E-value=0.022  Score=46.10  Aligned_cols=20  Identities=40%  Similarity=0.855  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |+++|.|++|||||..++..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999999865

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.19  E-value=0.023  Score=45.45  Aligned_cols=20  Identities=25%  Similarity=0.561  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |+|+|.+|+|||||.+++..
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999975

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.18  E-value=0.022  Score=46.56  Aligned_cols=20  Identities=35%  Similarity=0.873  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |+++|.||+|||||..++..
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999999875

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.16  E-value=0.023  Score=45.68  Aligned_cols=20  Identities=30%  Similarity=0.624  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |+|+|.+|+|||||.+++..
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999999874

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=93.10  E-value=0.024  Score=50.01  Aligned_cols=41  Identities=12%  Similarity=0.124  Sum_probs=32.1

Q ss_pred             ccchhhhhhhccccccEEEEEEcCCCCcHHHHHHHHhccCC
Q psy4598         257 LGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKPLN  297 (369)
Q Consensus       257 ~~~~~~~~~~~~~~~~~lIll~G~pGSGKSTla~~L~~~~~  297 (369)
                      +..+-.++-....+.+.++++.|+|++|||+++..+.+.++
T Consensus        89 f~~~l~~~L~~~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg  129 (267)
T d1u0ja_          89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHcCCCCccEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            33444445555667788999999999999999999998764

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=93.04  E-value=0.016  Score=46.33  Aligned_cols=23  Identities=26%  Similarity=0.484  Sum_probs=19.3

Q ss_pred             ceEEEEEcCCCCCcchhhhhccC
Q psy4598         223 KQVLIMIGSQGSGKSSFVSTYLK  245 (369)
Q Consensus       223 ~~i~v~~g~~~~gks~~~~~~~~  245 (369)
                      +.|+++.|+|||||||+++.+..
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45888999999999999996543

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=93.03  E-value=0.0055  Score=49.96  Aligned_cols=31  Identities=26%  Similarity=0.570  Sum_probs=23.3

Q ss_pred             EEEEcCCCCCcchhhhhccCCCccccccccc
Q psy4598         226 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRDT  256 (369)
Q Consensus       226 ~v~~g~~~~gks~~~~~~~~~~~~~~i~r~~  256 (369)
                      ++++|+|||||||.++......|+..++-|.
T Consensus         5 Iil~G~~GsGKSTia~~LA~~Lg~~~id~D~   35 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELARALGYEFVDTDI   35 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEehhh
Confidence            4578999999999999765555776665444

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.02  E-value=0.025  Score=45.42  Aligned_cols=21  Identities=29%  Similarity=0.670  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~  295 (369)
                      |+++|.+|+|||||..++...
T Consensus         6 i~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           6 VVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999999753

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.00  E-value=0.025  Score=45.59  Aligned_cols=20  Identities=20%  Similarity=0.677  Sum_probs=18.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |+++|.+|+|||+|.+++..
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            79999999999999999865

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.00  E-value=0.025  Score=45.49  Aligned_cols=20  Identities=40%  Similarity=0.722  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |+++|.+|+|||||..++..
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            67899999999999999875

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=92.98  E-value=0.018  Score=49.70  Aligned_cols=32  Identities=19%  Similarity=0.376  Sum_probs=24.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC---CcEEEeCC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL---NYTTVNRD  304 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~---~~~~i~~D  304 (369)
                      .++-+.|++||||||+.+.+.-..   +-+.++..
T Consensus        26 ei~~iiG~nGaGKSTLl~~l~Gl~~~~G~I~~~g~   60 (231)
T d1l7vc_          26 EILHLVGPNGAGKSTLLARMAGMTSGKGSIQFAGQ   60 (231)
T ss_dssp             CEEECBCCTTSSHHHHHHHHHTSCCCSSEEEESSS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCCCCceEEEECCE
Confidence            578999999999999999997642   34444443

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=92.90  E-value=0.18  Score=46.68  Aligned_cols=75  Identities=23%  Similarity=0.278  Sum_probs=43.2

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHhccCC---cEEEeC-Ccch--------------hHHHHHHHHHHHHhCCCcEEEeCCCC
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYLKPLN---YTTVNR-DTLG--------------SWQKCVSVMKAALDSGLSVVVDNTNP  333 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~~~~~---~~~i~~-D~~~--------------~~~~~~~~~~~~l~~g~~vIiD~tn~  333 (369)
                      .=+|+++||.||||||....+....+   ..++.. |.+.              .-......++.+++..-.||+=+--.
T Consensus       158 ~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiEdPiE~~~~~~~q~~v~~~~~~~~~~~l~~~lR~dPDvi~igEiR  237 (401)
T d1p9ra_         158 HGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIR  237 (401)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCC
T ss_pred             hceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEeccCcccccCCCCeeeecCCcCCCHHHHHHHHHhhcCCEEEecCcC
Confidence            46899999999999998888876531   111211 2110              01123444555566666666666555


Q ss_pred             CHHHHHHHHHHHH
Q psy4598         334 DKESRHRYIEAAK  346 (369)
Q Consensus       334 ~~~~r~~~~~la~  346 (369)
                      +.+.-...++.|.
T Consensus       238 d~~ta~~a~~aa~  250 (401)
T d1p9ra_         238 DLETAQIAVQASL  250 (401)
T ss_dssp             SHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHh
Confidence            6655555555443

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=92.89  E-value=0.061  Score=49.93  Aligned_cols=23  Identities=26%  Similarity=0.491  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .-++|+|+||+|||+++..|+++
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~~   66 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQR   66 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHHHH
Confidence            33588899999999999988874

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.88  E-value=0.027  Score=45.45  Aligned_cols=21  Identities=38%  Similarity=0.705  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~  295 (369)
                      |+|+|.+|+|||+|.+++...
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999999853

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.87  E-value=0.025  Score=45.65  Aligned_cols=20  Identities=30%  Similarity=0.768  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |+|+|.||+|||||.+++..
T Consensus         8 i~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           8 LVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78899999999999999865

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=92.82  E-value=0.039  Score=48.06  Aligned_cols=41  Identities=15%  Similarity=0.333  Sum_probs=31.9

Q ss_pred             hhccccccEEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCc
Q psy4598         265 SVMKAALDSVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDT  305 (369)
Q Consensus       265 ~~~~~~~~~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~  305 (369)
                      ..++++..++|+++|-=|+||||++-.|+..+     ....|+.|.
T Consensus        13 ~~~~~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~G~rVllvD~Dp   58 (279)
T d1ihua2          13 DDIARNEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDP   58 (279)
T ss_dssp             HHHHTTSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred             HHhhcCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence            34566777999999999999999877776542     567778884

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.78  E-value=0.026  Score=45.73  Aligned_cols=21  Identities=29%  Similarity=0.705  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~  294 (369)
                      =|+|+|.+|+|||||.+++..
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999999875

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.78  E-value=0.036  Score=49.14  Aligned_cols=88  Identities=14%  Similarity=0.075  Sum_probs=49.5

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCC-----------cEEEeCCcch---------------------------hHHHHHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLN-----------YTTVNRDTLG---------------------------SWQKCVS  314 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~-----------~~~i~~D~~~---------------------------~~~~~~~  314 (369)
                      +-|.++|..|||||||+.+|....+           ....+.+...                           -+..+..
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~~   86 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFTI   86 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCST
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhHH
Confidence            3478999999999999999965321           1222222110                           0112222


Q ss_pred             HHHHHH--hCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCC
Q psy4598         315 VMKAAL--DSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNIS  360 (369)
Q Consensus       315 ~~~~~l--~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~  360 (369)
                      .+..++  ..+-.+|||+...-...-..+.+.+++++.|..++.=..+
T Consensus        87 e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~i~fINKmD  134 (276)
T d2bv3a2          87 EVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMD  134 (276)
T ss_dssp             THHHHHHHCCEEEEEEETTTSSCHHHHHHHHHHHTTTCCEEEEEECTT
T ss_pred             HHHHHHHhhhheEEeccccCCcchhHHHHHHHHHHcCCCEEEEEeccc
Confidence            333333  2344678998776544455555778899999765544343

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.74  E-value=0.029  Score=45.20  Aligned_cols=21  Identities=24%  Similarity=0.564  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~  295 (369)
                      |+|+|.+|+|||||.+.+...
T Consensus         4 i~lvG~~~vGKTsLi~~~~~~   24 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGGV   24 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEECCCCcCHHHHHHHHhCC
Confidence            688999999999999999754

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.73  E-value=0.027  Score=45.22  Aligned_cols=20  Identities=30%  Similarity=0.674  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |+++|.+|+|||||.+++..
T Consensus         7 i~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67889999999999999975

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.69  E-value=0.028  Score=44.89  Aligned_cols=20  Identities=30%  Similarity=0.768  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |+++|.+|+|||||.+++..
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68889999999999999974

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=92.66  E-value=0.0096  Score=49.19  Aligned_cols=30  Identities=17%  Similarity=0.376  Sum_probs=23.3

Q ss_pred             EEEcCCCCCcchhhhhccCCCccccccccc
Q psy4598         227 IMIGSQGSGKSSFVSTYLKPLNYTTVNRDT  256 (369)
Q Consensus       227 v~~g~~~~gks~~~~~~~~~~~~~~i~r~~  256 (369)
                      |++|+|||||||.++.+...-|+..|+-..
T Consensus         7 il~G~pGSGKsT~a~~La~~~g~~~i~~gd   36 (190)
T d1ak2a1           7 VLLGPPGAGKGTQAPKLAKNFCVCHLATGD   36 (190)
T ss_dssp             EEECCTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHhCCeEEeHHH
Confidence            468999999999999776555777777543

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=92.63  E-value=0.0077  Score=49.15  Aligned_cols=32  Identities=16%  Similarity=0.429  Sum_probs=24.3

Q ss_pred             EEEEcCCCCCcchhhhhccCCCcccccccccc
Q psy4598         226 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  257 (369)
Q Consensus       226 ~v~~g~~~~gks~~~~~~~~~~~~~~i~r~~~  257 (369)
                      ++++|+|||||||.++.....-|+..|+-+.+
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~~~~~i~~~~l   34 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAYGIPHISTGDM   34 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCCEEEHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCceechhHH
Confidence            56789999999999987655557766765443

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.58  E-value=0.031  Score=45.40  Aligned_cols=20  Identities=35%  Similarity=0.745  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |+|+|.+|+|||||.+++..
T Consensus        10 i~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999999864

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=92.48  E-value=0.033  Score=44.93  Aligned_cols=20  Identities=40%  Similarity=0.757  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |+|+|.+|+|||||.+++..
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           7 VIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68899999999999999864

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.48  E-value=0.03  Score=46.31  Aligned_cols=20  Identities=35%  Similarity=0.733  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |+++|.+|+|||||..++..
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            68899999999999999875

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.31  E-value=0.033  Score=45.47  Aligned_cols=23  Identities=17%  Similarity=0.421  Sum_probs=19.9

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .=|+|+|.+|+|||+|.+++...
T Consensus         6 iKivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           6 IKCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            34799999999999999998764

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.30  E-value=0.033  Score=44.61  Aligned_cols=20  Identities=25%  Similarity=0.590  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |+|+|.+|+|||||..++..
T Consensus         7 v~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           7 IAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67889999999999999864

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=92.28  E-value=0.019  Score=46.41  Aligned_cols=23  Identities=26%  Similarity=0.329  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .-|.|+|.|++|||||.++|...
T Consensus        17 ~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          17 IEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             EEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            45899999999999999999653

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.27  E-value=0.012  Score=48.30  Aligned_cols=22  Identities=18%  Similarity=0.296  Sum_probs=18.5

Q ss_pred             ceEEEEEcCCCCCcchhhhhcc
Q psy4598         223 KQVLIMIGSQGSGKSSFVSTYL  244 (369)
Q Consensus       223 ~~i~v~~g~~~~gks~~~~~~~  244 (369)
                      --+++++|+|||||||+++.+.
T Consensus        19 g~vI~L~G~pGSGKTTiAk~La   40 (195)
T d1x6va3          19 GCTVWLTGLSGAGKTTVSMALE   40 (195)
T ss_dssp             CEEEEEESSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4467799999999999999653

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=92.26  E-value=0.014  Score=48.58  Aligned_cols=33  Identities=24%  Similarity=0.376  Sum_probs=25.5

Q ss_pred             EEEEcCCCCCcchhhhhccCCCccccccccccc
Q psy4598         226 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG  258 (369)
Q Consensus       226 ~v~~g~~~~gks~~~~~~~~~~~~~~i~r~~~~  258 (369)
                      ++++|+|||||||.++.+...-|+.+|+-+.+-
T Consensus         9 IiliG~PGSGKtT~a~~La~~~g~~~is~gdll   41 (189)
T d2ak3a1           9 AAIMGAPGSGKGTVSSRITKHFELKHLSSGDLL   41 (189)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHBCCEEEEHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHH
Confidence            456799999999999987766688888764443

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=92.25  E-value=0.015  Score=46.64  Aligned_cols=30  Identities=27%  Similarity=0.453  Sum_probs=22.5

Q ss_pred             ceEEEEEcCCCCCcchhhhhccCCCccccc
Q psy4598         223 KQVLIMIGSQGSGKSSFVSTYLKPLNYTTV  252 (369)
Q Consensus       223 ~~i~v~~g~~~~gks~~~~~~~~~~~~~~i  252 (369)
                      +..+++.|+||+||||+++.+...-++..+
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~~~~i   36 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFNTTSA   36 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTTCEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhCCCeE
Confidence            456788999999999999976544454443

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=92.25  E-value=0.013  Score=48.06  Aligned_cols=30  Identities=13%  Similarity=0.408  Sum_probs=23.0

Q ss_pred             EEEEcCCCCCcchhhhhccCCCcccccccc
Q psy4598         226 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRD  255 (369)
Q Consensus       226 ~v~~g~~~~gks~~~~~~~~~~~~~~i~r~  255 (369)
                      ++++|+|||||||.++.+...-|+..++-.
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~g~~~is~g   32 (182)
T d1s3ga1           3 IVLMGLPGAGKGTQADRIVEKYGTPHISTG   32 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCceeeHH
Confidence            567899999999999876655577666543

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.24  E-value=0.036  Score=44.84  Aligned_cols=20  Identities=35%  Similarity=0.758  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |+++|.+|+|||||.+++..
T Consensus         6 v~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68999999999999999865

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=92.23  E-value=0.0086  Score=49.00  Aligned_cols=33  Identities=12%  Similarity=0.301  Sum_probs=24.6

Q ss_pred             EEEEcCCCCCcchhhhhccCCCccccccccccc
Q psy4598         226 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG  258 (369)
Q Consensus       226 ~v~~g~~~~gks~~~~~~~~~~~~~~i~r~~~~  258 (369)
                      ++++|+|||||||.++.+...-++..++-..+.
T Consensus         3 I~i~G~pGSGKsT~~~~La~~~~~~~i~~~~ll   35 (179)
T d1e4va1           3 IILLGAPVAGKGTQAQFIMEKYGIPQISTGDML   35 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCceechhhHh
Confidence            467899999999999876555577666654443

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.22  E-value=0.033  Score=45.20  Aligned_cols=21  Identities=24%  Similarity=0.506  Sum_probs=18.5

Q ss_pred             EEEEcCCCCcHHHHHHHHhcc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~  295 (369)
                      |+|+|.+|+|||||..++...
T Consensus         5 ivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           5 LVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            578899999999999998764

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=92.21  E-value=0.03  Score=45.69  Aligned_cols=20  Identities=25%  Similarity=0.378  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |-|+|+|++|||||.++|..
T Consensus         4 VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEE
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            67999999999999999964

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.19  E-value=0.038  Score=44.34  Aligned_cols=21  Identities=33%  Similarity=0.727  Sum_probs=18.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhcc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~  295 (369)
                      |+++|.+|+|||+|.+++...
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHcC
Confidence            688999999999999999753

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=92.15  E-value=0.14  Score=44.83  Aligned_cols=88  Identities=19%  Similarity=0.287  Sum_probs=52.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccCCc-----------EEEeCCcch---------------------------hHHHHHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPLNY-----------TTVNRDTLG---------------------------SWQKCVS  314 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~~~-----------~~i~~D~~~---------------------------~~~~~~~  314 (369)
                      +-|.++|..|+|||||+.+|....+.           .+.+.+...                           -+..+..
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~dF~~   82 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGDFVG   82 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGGGHH
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhhhhh
Confidence            34788999999999999999543221           111111100                           0223344


Q ss_pred             HHHHHHh--CCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCC
Q psy4598         315 VMKAALD--SGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNIS  360 (369)
Q Consensus       315 ~~~~~l~--~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~  360 (369)
                      .+..+++  .+-.+|||+...-...-.+..+.+++++.+..++.-..+
T Consensus        83 e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~~i~iNk~D  130 (267)
T d2dy1a2          83 EIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLD  130 (267)
T ss_dssp             HHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGG
T ss_pred             hhhhhhcccCceEEEeeccCCccchhHHHHHhhhhccccccccccccc
Confidence            4444443  355778998865444555556788899998766554443

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.14  E-value=0.022  Score=46.11  Aligned_cols=20  Identities=30%  Similarity=0.683  Sum_probs=8.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |+|+|.+|+|||||.++|..
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68889999999999998875

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.12  E-value=0.039  Score=44.36  Aligned_cols=21  Identities=33%  Similarity=0.654  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhcc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~  295 (369)
                      |+++|.+|+|||+|..++...
T Consensus         6 i~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           6 LVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            678999999999999998753

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.06  E-value=0.037  Score=45.37  Aligned_cols=19  Identities=32%  Similarity=0.690  Sum_probs=17.6

Q ss_pred             EEEEcCCCCcHHHHHHHHh
Q psy4598         275 LIMIGSQGSGKSSFVSTYL  293 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~  293 (369)
                      |+|.|.+|+|||||..++.
T Consensus         5 ivllG~~~vGKTsll~r~~   23 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQMR   23 (200)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHh
Confidence            6899999999999999993

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.79  E-value=0.027  Score=45.57  Aligned_cols=20  Identities=40%  Similarity=0.870  Sum_probs=17.4

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |+++|.+|+|||||..++..
T Consensus         6 i~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC-
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67889999999999998865

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=91.74  E-value=0.011  Score=47.77  Aligned_cols=31  Identities=32%  Similarity=0.546  Sum_probs=23.2

Q ss_pred             EEEEcCCCCCcchhhhhccCCCccccccccc
Q psy4598         226 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRDT  256 (369)
Q Consensus       226 ~v~~g~~~~gks~~~~~~~~~~~~~~i~r~~  256 (369)
                      ++++|+||+||||+++......|+..++-|.
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~~~~~d~d~   33 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLDLVFLDSDF   33 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHTCEEEEHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCEEecCc
Confidence            4667999999999999765555776665443

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.65  E-value=0.032  Score=45.34  Aligned_cols=20  Identities=25%  Similarity=0.502  Sum_probs=18.1

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |.|+|.|++|||||.++|..
T Consensus         4 VaivG~~nvGKSTLin~L~~   23 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTR   23 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCS
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            67889999999999999964

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.64  E-value=0.047  Score=44.00  Aligned_cols=20  Identities=30%  Similarity=0.757  Sum_probs=18.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |+++|.+|+|||||..++..
T Consensus         7 i~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           7 LVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            67789999999999999874

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=91.63  E-value=0.026  Score=44.87  Aligned_cols=21  Identities=19%  Similarity=0.488  Sum_probs=18.5

Q ss_pred             eEEEEEcCCCCCcchhhhhcc
Q psy4598         224 QVLIMIGSQGSGKSSFVSTYL  244 (369)
Q Consensus       224 ~i~v~~g~~~~gks~~~~~~~  244 (369)
                      .|+.++|++||||||++++.+
T Consensus         3 Pvi~itG~~GSGKTTL~~~L~   23 (170)
T d1np6a_           3 PLLAFAAWSGTGKTTLLKKLI   23 (170)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHH
Confidence            477889999999999999765

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=91.62  E-value=0.016  Score=47.79  Aligned_cols=34  Identities=15%  Similarity=0.220  Sum_probs=25.3

Q ss_pred             EEEEEcCCCCCcchhhhhccCCCccccccccccc
Q psy4598         225 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG  258 (369)
Q Consensus       225 i~v~~g~~~~gks~~~~~~~~~~~~~~i~r~~~~  258 (369)
                      .+++.|+|||||||.++.+...-|+..|+-+.+.
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~~~~~is~~~~~   38 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKYQLAHISAGDLL   38 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHCCcEEehhHHH
Confidence            4667899999999999876554577777655443

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.55  E-value=0.045  Score=46.99  Aligned_cols=22  Identities=32%  Similarity=0.422  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~  295 (369)
                      ..+|+|+||+|||||..+|...
T Consensus        97 t~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          97 ISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             EEEEECSTTSSHHHHHHHHSTT
T ss_pred             eEEEECCCCCCHHHHHHhhcch
Confidence            4589999999999999999754

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.49  E-value=0.014  Score=46.37  Aligned_cols=20  Identities=25%  Similarity=0.670  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |.|+|.|++|||||.++|..
T Consensus         3 I~liG~~n~GKSSLin~l~g   22 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLN   22 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            68999999999999999963

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=91.39  E-value=0.047  Score=47.57  Aligned_cols=23  Identities=30%  Similarity=0.540  Sum_probs=20.1

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhcc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~  295 (369)
                      .-|+|+|.||+||||+...|...
T Consensus        33 l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          33 LTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             cEEEEECCCCCcHHHHHHHHhCC
Confidence            46889999999999999999753

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=91.35  E-value=0.33  Score=42.28  Aligned_cols=95  Identities=9%  Similarity=0.071  Sum_probs=58.4

Q ss_pred             cccccccchhhhhhhccccccEEEEEEcCCCCcHHHHHHHHhcc-----CCcEEEeCCcchhHHHHHHHHHHHHh-CCCc
Q psy4598         252 VNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYLKP-----LNYTTVNRDTLGSWQKCVSVMKAALD-SGLS  325 (369)
Q Consensus       252 i~r~~~~~~~~~~~~~~~~~~~lIll~G~pGSGKSTla~~L~~~-----~~~~~i~~D~~~~~~~~~~~~~~~l~-~g~~  325 (369)
                      .+.++.....+....+..+.|+.-+|.|-.|||||-+|-..+..     ..+.++-.-.+-+.+. .....+.+. .|..
T Consensus        84 LT~~Q~~ai~ei~~d~~~~~~m~rLL~GdvGSGKT~Va~~a~~~~~~~g~q~~~m~Pt~~La~Qh-~~~~~~~f~~~~~~  162 (264)
T d1gm5a3          84 LTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQH-YRRTVESFSKFNIH  162 (264)
T ss_dssp             CCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHH-HHHHHHHHTCSSCC
T ss_pred             CCchHHHHHHHHHHHhhccCcceeeeeccccccccHHHHHHHHHHHhcccceeEEeehHhhhHHH-HHHHHHhhhhcccc
Confidence            44555566666777787888888899999999999998877643     2455555544332222 233344443 3555


Q ss_pred             EEEeCCCCCHHHHHHHHHHHHh
Q psy4598         326 VVVDNTNPDKESRHRYIEAAKQ  347 (369)
Q Consensus       326 vIiD~tn~~~~~r~~~~~la~~  347 (369)
                      +.+=....+...|.......+.
T Consensus       163 v~~l~~~~~~~~r~~~~~~~~~  184 (264)
T d1gm5a3         163 VALLIGATTPSEKEKIKSGLRN  184 (264)
T ss_dssp             EEECCSSSCHHHHHHHHHHHHS
T ss_pred             ceeeccccchHHHHHHHHHHHC
Confidence            5554445566666666555544

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.32  E-value=0.046  Score=44.92  Aligned_cols=21  Identities=19%  Similarity=0.517  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhcc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~  295 (369)
                      |+++|.+|+|||+|..++...
T Consensus         6 vvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            688999999999999998753

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.31  E-value=0.046  Score=44.72  Aligned_cols=20  Identities=20%  Similarity=0.577  Sum_probs=18.6

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |+++|.+|+|||||..++..
T Consensus        12 i~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            78999999999999999875

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.29  E-value=0.049  Score=46.14  Aligned_cols=20  Identities=35%  Similarity=0.567  Sum_probs=18.2

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |+|.|.+|+||||+.+++..
T Consensus         9 illlG~~~vGKTsll~~~~~   28 (221)
T d1azta2           9 LLLLGAGESGKSTIVKQMRI   28 (221)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            69999999999999999863

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.26  E-value=0.048  Score=44.47  Aligned_cols=20  Identities=20%  Similarity=0.669  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |+|+|.+|+|||+|..++..
T Consensus         5 ivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            68899999999999999876

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=91.22  E-value=0.033  Score=44.67  Aligned_cols=20  Identities=20%  Similarity=0.408  Sum_probs=17.6

Q ss_pred             eEEEEEcCCCCCcchhhhhc
Q psy4598         224 QVLIMIGSQGSGKSSFVSTY  243 (369)
Q Consensus       224 ~i~v~~g~~~~gks~~~~~~  243 (369)
                      .|+++.|+|||||||+++..
T Consensus         2 kiI~i~G~~GsGKsT~~~~L   21 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLA   21 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            57889999999999999854

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=91.18  E-value=0.051  Score=49.92  Aligned_cols=20  Identities=25%  Similarity=0.579  Sum_probs=17.0

Q ss_pred             EEEEEEcCCCCcHHHHHHHH
Q psy4598         273 SVLIMIGSQGSGKSSFVSTY  292 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L  292 (369)
                      .+.++.|+||+||||+...+
T Consensus       164 ~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         164 RISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             SEEEEECCTTSTHHHHHHHH
T ss_pred             CeEEEEcCCCCCceehHHHH
Confidence            58999999999999887543

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=91.07  E-value=0.04  Score=48.82  Aligned_cols=16  Identities=31%  Similarity=0.746  Sum_probs=12.8

Q ss_pred             EEEEcCCCCcHHHHHH
Q psy4598         275 LIMIGSQGSGKSSFVS  290 (369)
Q Consensus       275 Ill~G~pGSGKSTla~  290 (369)
                      +++.|+|||||||.+-
T Consensus        27 ~lV~g~aGSGKTt~l~   42 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLT   42 (318)
T ss_dssp             EEEEECTTSCHHHHHH
T ss_pred             EEEEecCCccHHHHHH
Confidence            5677999999997653

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.00  E-value=0.36  Score=41.41  Aligned_cols=72  Identities=14%  Similarity=0.236  Sum_probs=40.8

Q ss_pred             EEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCcchhH---HHHHHH--------------HHHHHhCCCcEEEeCCC
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDTLGSW---QKCVSV--------------MKAALDSGLSVVVDNTN  332 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~-----~~~~i~~D~~~~~---~~~~~~--------------~~~~l~~g~~vIiD~tn  332 (369)
                      |+|.|++||||+++|+.+....     ....++...+...   ..+...              ..+ ...|..+++|+..
T Consensus        26 vlI~Ge~GtGK~~~A~~ih~~s~~~~~~~~~~~~~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~l~-~a~gGtL~l~~i~  104 (247)
T d1ny5a2          26 VLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFE-LADGGTLFLDEIG  104 (247)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHH-HTTTSEEEEESGG
T ss_pred             EEEECCCCcCHHHHHHHHHHhcCCcccccccchhhhhhhcccHHHhcCcccCCcCCcccccCCHHH-ccCCCEEEEeChH
Confidence            6888999999999999996542     2344444333211   111100              011 1234567788764


Q ss_pred             -CCHHHHHHHHHHHHh
Q psy4598         333 -PDKESRHRYIEAAKQ  347 (369)
Q Consensus       333 -~~~~~r~~~~~la~~  347 (369)
                       +.......+.+..+.
T Consensus       105 ~L~~~~Q~~L~~~l~~  120 (247)
T d1ny5a2         105 ELSLEAQAKLLRVIES  120 (247)
T ss_dssp             GCCHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHh
Confidence             355556666666654

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.98  E-value=0.014  Score=47.67  Aligned_cols=33  Identities=18%  Similarity=0.393  Sum_probs=24.3

Q ss_pred             EEEEcCCCCCcchhhhhccCCCccccccccccc
Q psy4598         226 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLG  258 (369)
Q Consensus       226 ~v~~g~~~~gks~~~~~~~~~~~~~~i~r~~~~  258 (369)
                      +++.|+|||||||.++.+...-|+..|+-+++.
T Consensus         3 I~i~G~pGsGKsT~a~~La~~~g~~~i~~~~l~   35 (181)
T d2cdna1           3 VLLLGPPGAGKGTQAVKLAEKLGIPQISTGELF   35 (181)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHCCceEchHHHH
Confidence            467799999999999976544477766654443

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.53  E-value=0.02  Score=46.21  Aligned_cols=28  Identities=29%  Similarity=0.464  Sum_probs=19.3

Q ss_pred             EEEEcCCCCCcchhhhhccCCCcccccc
Q psy4598         226 LIMIGSQGSGKSSFVSTYLKPLNYTTVN  253 (369)
Q Consensus       226 ~v~~g~~~~gks~~~~~~~~~~~~~~i~  253 (369)
                      +|++|+||+||||+++......|+-.++
T Consensus         4 IvliG~~G~GKSTig~~La~~l~~~fiD   31 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALGVGLLD   31 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHTCCEEE
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence            3566999999999998654333554443

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=90.32  E-value=0.047  Score=47.80  Aligned_cols=15  Identities=27%  Similarity=0.656  Sum_probs=12.2

Q ss_pred             EEEEcCCCCcHHHHH
Q psy4598         275 LIMIGSQGSGKSSFV  289 (369)
Q Consensus       275 Ill~G~pGSGKSTla  289 (369)
                      +++.|+|||||||.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            456799999999764

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=90.24  E-value=0.018  Score=46.66  Aligned_cols=22  Identities=27%  Similarity=0.567  Sum_probs=19.2

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~  294 (369)
                      .+.+|+|+.||||||+..++.-
T Consensus        25 ~~tvi~G~NGsGKStil~Ai~~   46 (222)
T d1qhla_          25 LVTTLSGGNGAGKSTTMAAFVT   46 (222)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            3568999999999999999964

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=89.86  E-value=0.063  Score=45.24  Aligned_cols=26  Identities=19%  Similarity=0.303  Sum_probs=21.8

Q ss_pred             CCCCceEEEEEcCCCCCcchhhhhcc
Q psy4598         219 PHDKKQVLIMIGSQGSGKSSFVSTYL  244 (369)
Q Consensus       219 ~~~~~~i~v~~g~~~~gks~~~~~~~  244 (369)
                      ..++.-++++.|+|||||||+++.+.
T Consensus        20 ~~~kg~vIwltGlsGsGKTTia~~L~   45 (208)
T d1m7ga_          20 RNQRGLTIWLTGLSASGKSTLAVELE   45 (208)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHH
T ss_pred             hCCCCeEEEEECCCCCCHHHHHHHHH
Confidence            45677789999999999999998653

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.70  E-value=0.034  Score=45.41  Aligned_cols=32  Identities=16%  Similarity=0.433  Sum_probs=23.3

Q ss_pred             EEEEcCCCCCcchhhhhccCCCcccccccccc
Q psy4598         226 LIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  257 (369)
Q Consensus       226 ~v~~g~~~~gks~~~~~~~~~~~~~~i~r~~~  257 (369)
                      +|+.|+|||||||.++.+...-|+..|+-+++
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~g~~~i~~~d~   36 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERFHAAHLATGDM   36 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHCCEEEEHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHhCCceEecccc
Confidence            55779999999999997654446666655433

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=89.70  E-value=0.11  Score=42.87  Aligned_cols=29  Identities=17%  Similarity=0.321  Sum_probs=23.0

Q ss_pred             EEEEEcCCCCcHHHHHHHHhccC-CcEEEe
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKPL-NYTTVN  302 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~~-~~~~i~  302 (369)
                      +|+++|...||||.+|++++... +..+|.
T Consensus         1 iiLVtGGarSGKS~~AE~l~~~~~~~~YiA   30 (180)
T d1c9ka_           1 MILVTGGARSGKSRHAEALIGDAPQVLYIA   30 (180)
T ss_dssp             CEEEEECTTSSHHHHHHHHHCSCSSEEEEE
T ss_pred             CEEEECCCCccHHHHHHHHHhcCCCcEEEE
Confidence            47999999999999999998754 344444

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.53  E-value=0.087  Score=42.78  Aligned_cols=21  Identities=33%  Similarity=0.596  Sum_probs=18.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhcc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~  295 (369)
                      |+|.|.+|+|||++..++...
T Consensus         5 iv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           5 LLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999999653

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.47  E-value=0.097  Score=42.05  Aligned_cols=20  Identities=35%  Similarity=0.688  Sum_probs=17.3

Q ss_pred             EEEEcCCCCCcchhhhhccC
Q psy4598         226 LIMIGSQGSGKSSFVSTYLK  245 (369)
Q Consensus       226 ~v~~g~~~~gks~~~~~~~~  245 (369)
                      ++++|.+++|||++.++++.
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            46789999999999998763

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.46  E-value=0.31  Score=44.98  Aligned_cols=22  Identities=41%  Similarity=0.545  Sum_probs=19.7

Q ss_pred             cEEEEEEcCCCCcHHHHHHHHh
Q psy4598         272 DSVLIMIGSQGSGKSSFVSTYL  293 (369)
Q Consensus       272 ~~lIll~G~pGSGKSTla~~L~  293 (369)
                      +.-|.++|.||+|||||..+|.
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~   77 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLR   77 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHh
Confidence            4558999999999999999996

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.26  E-value=0.1  Score=42.41  Aligned_cols=22  Identities=36%  Similarity=0.554  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~  295 (369)
                      =|+++|.+|+|||||..++...
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~   28 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTG   28 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4788999999999999988653

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=89.23  E-value=0.58  Score=39.44  Aligned_cols=22  Identities=23%  Similarity=0.460  Sum_probs=18.7

Q ss_pred             EEEEcCCCCcHHHHHHHHhccC
Q psy4598         275 LIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~~~  296 (369)
                      |+++|-..+||||+..+|....
T Consensus        12 i~viGHVd~GKSTL~~~Ll~~~   33 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLLHDS   33 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHc
Confidence            6778999999999999996543

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=89.02  E-value=0.074  Score=46.71  Aligned_cols=21  Identities=33%  Similarity=0.612  Sum_probs=18.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHh
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYL  293 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~  293 (369)
                      .+-+|+|+.||||||+-.++.
T Consensus        25 ~lnvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          25 RVTAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             SEEEEECCTTTCSTHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHH
Confidence            467999999999999998884

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=88.90  E-value=0.12  Score=44.33  Aligned_cols=22  Identities=27%  Similarity=0.466  Sum_probs=19.8

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~  294 (369)
                      .+++++||.+|||||+.+.++-
T Consensus        42 ~~~iiTGpN~~GKSt~lk~i~l   63 (234)
T d1wb9a2          42 RMLIITGPNMGGKSTYMRQTAL   63 (234)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEeccCchhhHHHHHHHHH
Confidence            5789999999999999999864

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=88.74  E-value=0.12  Score=39.70  Aligned_cols=24  Identities=29%  Similarity=0.296  Sum_probs=19.7

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL  296 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~  296 (369)
                      ...+|.+|.|||||+++-.+....
T Consensus         9 ~~~ll~apTGsGKT~~~~~~~~~~   32 (136)
T d1a1va1           9 QVAHLHAPTGSGKSTKVPAAYAAQ   32 (136)
T ss_dssp             EEEEEECCTTSCTTTHHHHHHHTT
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHc
Confidence            567999999999999987665554

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.74  E-value=0.11  Score=41.93  Aligned_cols=20  Identities=35%  Similarity=0.569  Sum_probs=18.3

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |+|.|..|+|||++.+++..
T Consensus         5 ivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           5 LLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            68999999999999999864

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.61  E-value=0.27  Score=38.84  Aligned_cols=20  Identities=35%  Similarity=0.715  Sum_probs=17.2

Q ss_pred             EEEEcCCCCCcchhhhhccC
Q psy4598         226 LIMIGSQGSGKSSFVSTYLK  245 (369)
Q Consensus       226 ~v~~g~~~~gks~~~~~~~~  245 (369)
                      ++++|.+++|||++.++++.
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            46789999999999998763

>d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.58  E-value=0.77  Score=37.82  Aligned_cols=47  Identities=15%  Similarity=0.256  Sum_probs=28.4

Q ss_pred             HHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCC-HHHHHH
Q psy4598         313 VSVMKAALDSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNIS-KEHAKH  366 (369)
Q Consensus       313 ~~~~~~~l~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~-~e~~~~  366 (369)
                      ...+...++.|+.+|+|-.-   ..-..+    +..+....+|++.+| .+...+
T Consensus        88 ~~~i~~~~~~gk~~lldid~---~g~~~l----k~~~~~~i~IfI~pps~e~l~~  135 (199)
T d1kjwa2          88 VQSVREVAEQGKHCILDVSA---NAVRRL----QAAHLHPIAIFIRPRSLENVLE  135 (199)
T ss_dssp             HHHHHHHHHTTCEEEECCCT---THHHHH----HHTTCCCEEEEECCSSHHHHHH
T ss_pred             eeEEEehhcCCCcccccccc---hHHhhh----hhhccceeEEeeccccHHHHHh
Confidence            45667788999999998543   222222    333445567888765 444444

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=88.53  E-value=0.068  Score=42.46  Aligned_cols=20  Identities=25%  Similarity=0.601  Sum_probs=16.3

Q ss_pred             EEEEcCCCCCcchhhhhccC
Q psy4598         226 LIMIGSQGSGKSSFVSTYLK  245 (369)
Q Consensus       226 ~v~~g~~~~gks~~~~~~~~  245 (369)
                      +++.|+|||||||+++.+..
T Consensus         8 I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           8 ILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            45679999999999986543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=88.40  E-value=0.047  Score=47.01  Aligned_cols=22  Identities=27%  Similarity=0.468  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~  295 (369)
                      ..+|+|+||+|||||..+|...
T Consensus        99 ~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          99 TTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             EEEEEESHHHHHHHHHHHHCC-
T ss_pred             eEEEECCCCccHHHHHHhhccH
Confidence            3478899999999999999764

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=88.39  E-value=0.95  Score=37.10  Aligned_cols=24  Identities=17%  Similarity=0.271  Sum_probs=20.3

Q ss_pred             ccE-EEEEEcCCCCcHHHHHHHHhc
Q psy4598         271 LDS-VLIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       271 ~~~-lIll~G~pGSGKSTla~~L~~  294 (369)
                      +|. -|.++|...+|||||..+|..
T Consensus         6 ~p~ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           6 QPEVNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CCCeEEEEEEccCCcHHHHHHHHHh
Confidence            453 488999999999999999964

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=88.21  E-value=0.081  Score=42.43  Aligned_cols=20  Identities=30%  Similarity=0.516  Sum_probs=17.4

Q ss_pred             eEEEEEcCCCCCcchhhhhc
Q psy4598         224 QVLIMIGSQGSGKSSFVSTY  243 (369)
Q Consensus       224 ~i~v~~g~~~~gks~~~~~~  243 (369)
                      .|+|+.|+||+||||.++.+
T Consensus         2 kiivi~G~~GsGKTT~~~~L   21 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKV   21 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHH
Confidence            47788999999999999865

>d1q92a_ c.108.1.8 (A:) 5'(3')-deoxyribonucleotidase (dNT-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: 5'(3')-deoxyribonucleotidase (dNT-2)
domain: 5'(3')-deoxyribonucleotidase (dNT-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.10  E-value=0.11  Score=42.66  Aligned_cols=26  Identities=12%  Similarity=0.019  Sum_probs=21.2

Q ss_pred             ccccHHHHHHHHHHCC-cEEEEEecCC
Q psy4598          55 LFSNIESVLKQYLDDG-YKLVIFTNQG   80 (369)
Q Consensus        55 ~~p~v~~~L~~L~~~G-~~i~i~TNq~   80 (369)
                      ++||+.++|++|++.| +.+.|+|..+
T Consensus        75 p~~gA~e~l~~L~~~~~~~v~i~t~~~  101 (195)
T d1q92a_          75 PLPGAVEAVKEMASLQNTDVFICTSPI  101 (195)
T ss_dssp             BCTTHHHHHHHHHHSTTEEEEEEECCC
T ss_pred             cccCHHHHHHHHhhccCccceEEcccc
Confidence            5799999999999865 5688888743

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=87.85  E-value=0.79  Score=36.08  Aligned_cols=22  Identities=23%  Similarity=0.508  Sum_probs=19.0

Q ss_pred             eEEEEEcCCCCCcchhhhhccC
Q psy4598         224 QVLIMIGSQGSGKSSFVSTYLK  245 (369)
Q Consensus       224 ~i~v~~g~~~~gks~~~~~~~~  245 (369)
                      -.+.++|.+++||||+.+.++.
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~   27 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLG   27 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHhC
Confidence            4577899999999999998864

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=87.75  E-value=0.15  Score=43.19  Aligned_cols=22  Identities=14%  Similarity=0.388  Sum_probs=19.6

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~  294 (369)
                      ++|-++|.|.+|||||..+|..
T Consensus         6 p~IaIiGh~d~GKSTL~~~L~~   27 (227)
T d1g7sa4           6 PIVSVLGHVDHGKTTLLDHIRG   27 (227)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEEeCCCccHHHHHHHHHh
Confidence            4688999999999999999965

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=87.54  E-value=0.17  Score=41.55  Aligned_cols=33  Identities=12%  Similarity=0.134  Sum_probs=24.5

Q ss_pred             EEEEEEcC-CCCcHHHHHHHHhccC-----CcEEEeCCc
Q psy4598         273 SVLIMIGS-QGSGKSSFVSTYLKPL-----NYTTVNRDT  305 (369)
Q Consensus       273 ~lIll~G~-pGSGKSTla~~L~~~~-----~~~~i~~D~  305 (369)
                      +-++++|- +|+||||++-.|+..+     .+.+++.|.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G~rVl~id~d~   40 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAGYRTAGYKPVA   40 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEEECSEE
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEECccc
Confidence            34789998 6999999998887753     455666553

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=87.50  E-value=0.21  Score=41.64  Aligned_cols=33  Identities=24%  Similarity=0.439  Sum_probs=25.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHhccC-----CcEEEeCCc
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYLKPL-----NYTTVNRDT  305 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~~~~-----~~~~i~~D~  305 (369)
                      .+.+..|-.|+||||+|..|+..+     .+.+|+.|.
T Consensus         3 vIav~s~KGGvGKTtia~nlA~~la~~g~~VlliD~D~   40 (232)
T d1hyqa_           3 TITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI   40 (232)
T ss_dssp             EEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             EEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            455666899999999999887643     567888775

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=87.39  E-value=0.16  Score=43.25  Aligned_cols=21  Identities=24%  Similarity=0.485  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCcHHHHHHHHhc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~  294 (369)
                      +++++||..|||||+.+.++-
T Consensus        37 ~~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          37 LVLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             EEEEESCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCccccchhhhhhHH
Confidence            689999999999999998754

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.18  E-value=0.85  Score=35.72  Aligned_cols=20  Identities=30%  Similarity=0.695  Sum_probs=17.3

Q ss_pred             EEEEcCCCCCcchhhhhccC
Q psy4598         226 LIMIGSQGSGKSSFVSTYLK  245 (369)
Q Consensus       226 ~v~~g~~~~gks~~~~~~~~  245 (369)
                      ++++|.+++|||++..+++.
T Consensus         6 i~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            46789999999999998764

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.75  E-value=0.68  Score=36.51  Aligned_cols=20  Identities=35%  Similarity=0.851  Sum_probs=17.2

Q ss_pred             EEEEcCCCCCcchhhhhccC
Q psy4598         226 LIMIGSQGSGKSSFVSTYLK  245 (369)
Q Consensus       226 ~v~~g~~~~gks~~~~~~~~  245 (369)
                      ++++|.+++|||++.+++..
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            46899999999999998763

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=86.68  E-value=0.13  Score=43.22  Aligned_cols=20  Identities=25%  Similarity=0.753  Sum_probs=17.6

Q ss_pred             EEEEEcCCCCCcchhhhhcc
Q psy4598         225 VLIMIGSQGSGKSSFVSTYL  244 (369)
Q Consensus       225 i~v~~g~~~~gks~~~~~~~  244 (369)
                      |++++|.+|+||||+..+++
T Consensus         2 vi~v~G~~GsGKTTLl~~ll   21 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFG   21 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHH
Confidence            57788999999999998765

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.58  E-value=0.53  Score=37.29  Aligned_cols=20  Identities=30%  Similarity=0.843  Sum_probs=17.3

Q ss_pred             EEEEcCCCCCcchhhhhccC
Q psy4598         226 LIMIGSQGSGKSSFVSTYLK  245 (369)
Q Consensus       226 ~v~~g~~~~gks~~~~~~~~  245 (369)
                      ++++|.+++|||++.+++..
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            56899999999999998763

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=86.56  E-value=0.21  Score=42.13  Aligned_cols=20  Identities=25%  Similarity=0.589  Sum_probs=17.1

Q ss_pred             EEEEcCCCCCcchhhhhccC
Q psy4598         226 LIMIGSQGSGKSSFVSTYLK  245 (369)
Q Consensus       226 ~v~~g~~~~gks~~~~~~~~  245 (369)
                      +++.|+||+|||++++-+..
T Consensus        38 ~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          38 LLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56899999999999996653

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=86.41  E-value=0.18  Score=42.62  Aligned_cols=26  Identities=31%  Similarity=0.640  Sum_probs=17.6

Q ss_pred             CCCCCceEEEEEcCCCCCcchhhhhc
Q psy4598         218 IPHDKKQVLIMIGSQGSGKSSFVSTY  243 (369)
Q Consensus       218 ~~~~~~~i~v~~g~~~~gks~~~~~~  243 (369)
                      .+.+.+.|+++||++|+||||.+-++
T Consensus         7 ~~~k~p~vi~lvGptGvGKTTTiAKL   32 (211)
T d1j8yf2           7 IPDKIPYVIMLVGVQGTGKATTAGKL   32 (211)
T ss_dssp             SCSSSSEEEEEECSCCC----HHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHH
Confidence            34567889999999999999987654

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.32  E-value=0.16  Score=40.85  Aligned_cols=27  Identities=26%  Similarity=0.298  Sum_probs=20.3

Q ss_pred             CCCCCceEEEEEcCCCCCcchhhhhcc
Q psy4598         218 IPHDKKQVLIMIGSQGSGKSSFVSTYL  244 (369)
Q Consensus       218 ~~~~~~~i~v~~g~~~~gks~~~~~~~  244 (369)
                      +.++.+-|+-..|++||||||+++.+.
T Consensus        17 ~~~~~~~iIgI~G~~GSGKSTla~~L~   43 (198)
T d1rz3a_          17 IKTAGRLVLGIDGLSRSGKTTLANQLS   43 (198)
T ss_dssp             SCCSSSEEEEEEECTTSSHHHHHHHHH
T ss_pred             ccCCCCEEEEEECCCCCCHHHHHHHHH
Confidence            344555555588999999999999654

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=86.24  E-value=0.058  Score=45.07  Aligned_cols=32  Identities=28%  Similarity=0.466  Sum_probs=23.6

Q ss_pred             EEEEE-cCCCCCcchhhhhccCCCccccccccc
Q psy4598         225 VLIMI-GSQGSGKSSFVSTYLKPLNYTTVNRDT  256 (369)
Q Consensus       225 i~v~~-g~~~~gks~~~~~~~~~~~~~~i~r~~  256 (369)
                      |+|.+ |+|||||||.++.....-|+.+++-..
T Consensus         4 i~IaIdGp~GsGKgT~ak~La~~lg~~~istGd   36 (223)
T d1q3ta_           4 IQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGA   36 (223)
T ss_dssp             CEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhCCcEECHHH
Confidence            34444 999999999999876656777776433

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=86.07  E-value=0.072  Score=44.20  Aligned_cols=33  Identities=18%  Similarity=0.488  Sum_probs=25.7

Q ss_pred             EEEEEcCCCCCcchhhhhccCCCcccccccccc
Q psy4598         225 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTL  257 (369)
Q Consensus       225 i~v~~g~~~~gks~~~~~~~~~~~~~~i~r~~~  257 (369)
                      |++.-|+|||||||.++.....-|+.+++-..+
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdL   37 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI   37 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence            666779999999999998766568777764333

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=85.94  E-value=0.18  Score=41.06  Aligned_cols=26  Identities=23%  Similarity=0.533  Sum_probs=20.8

Q ss_pred             CCCceEEEEEcCCCCCcchhhhhccC
Q psy4598         220 HDKKQVLIMIGSQGSGKSSFVSTYLK  245 (369)
Q Consensus       220 ~~~~~i~v~~g~~~~gks~~~~~~~~  245 (369)
                      .+++-++++-|..||||||+++.+..
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~   31 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEK   31 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHH
Confidence            45566778889999999999996643

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=85.87  E-value=0.07  Score=44.69  Aligned_cols=34  Identities=24%  Similarity=0.487  Sum_probs=27.0

Q ss_pred             EEEEEcCCCCCcchhhhhccCCCcccccccccccc
Q psy4598         225 VLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS  259 (369)
Q Consensus       225 i~v~~g~~~~gks~~~~~~~~~~~~~~i~r~~~~~  259 (369)
                      |+-+.|.+||||||+++ ++...||..++-|.+..
T Consensus         5 iIgitG~igSGKStv~~-~l~~~G~~vidaD~i~~   38 (208)
T d1vhta_           5 IVALTGGIGSGKSTVAN-AFADLGINVIDADIIAR   38 (208)
T ss_dssp             EEEEECCTTSCHHHHHH-HHHHTTCEEEEHHHHHH
T ss_pred             EEEEECCCcCCHHHHHH-HHHHCCCcEEEchHHHH
Confidence            55678999999999997 45577998888776664

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.81  E-value=0.2  Score=45.57  Aligned_cols=21  Identities=33%  Similarity=0.561  Sum_probs=18.4

Q ss_pred             EEEEEEcCCCCcHHHHHHHHh
Q psy4598         273 SVLIMIGSQGSGKSSFVSTYL  293 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~~L~  293 (369)
                      .+-+++|+.|||||++..++.
T Consensus        26 ~l~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          26 NFTSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             SEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            356899999999999999984

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=85.64  E-value=0.11  Score=41.34  Aligned_cols=19  Identities=32%  Similarity=0.709  Sum_probs=16.0

Q ss_pred             EEEEcCCCCCcchhhhhcc
Q psy4598         226 LIMIGSQGSGKSSFVSTYL  244 (369)
Q Consensus       226 ~v~~g~~~~gks~~~~~~~  244 (369)
                      ++++|++|+||||+.+..+
T Consensus         3 i~I~G~~G~GKSTLl~~i~   21 (178)
T d1ye8a1           3 IIITGEPGVGKTTLVKKIV   21 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCcHHHHHHHHHH
Confidence            4678999999999998654

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=85.61  E-value=0.32  Score=40.37  Aligned_cols=35  Identities=20%  Similarity=0.460  Sum_probs=26.1

Q ss_pred             ccEEEEEE-cCCCCcHHHHHHHHhccC-----CcEEEeCCc
Q psy4598         271 LDSVLIMI-GSQGSGKSSFVSTYLKPL-----NYTTVNRDT  305 (369)
Q Consensus       271 ~~~lIll~-G~pGSGKSTla~~L~~~~-----~~~~i~~D~  305 (369)
                      |.++|.+. +-.|+||||++..|+..+     .+.+++.|.
T Consensus         1 m~~vIav~~~kGGvGKTtia~nLA~~la~~g~~VlliD~D~   41 (237)
T d1g3qa_           1 MGRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL   41 (237)
T ss_dssp             CCEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred             CCeEEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            34556554 789999999999997653     577888774

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.54  E-value=0.26  Score=41.66  Aligned_cols=29  Identities=17%  Similarity=0.274  Sum_probs=22.5

Q ss_pred             CCCceEEEEEcCCCCCcchhhhhccCCCc
Q psy4598         220 HDKKQVLIMIGSQGSGKSSFVSTYLKPLN  248 (369)
Q Consensus       220 ~~~~~i~v~~g~~~~gks~~~~~~~~~~~  248 (369)
                      .......++.|+||+|||++++.+..+.+
T Consensus        49 ~~~~~~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          49 SGVFRAAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             TTSCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            44556788999999999999997664433

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=85.48  E-value=0.098  Score=42.72  Aligned_cols=35  Identities=26%  Similarity=0.503  Sum_probs=25.8

Q ss_pred             eEEEEEcCCCCCcchhhhhccCCCcccccccccccc
Q psy4598         224 QVLIMIGSQGSGKSSFVSTYLKPLNYTTVNRDTLGS  259 (369)
Q Consensus       224 ~i~v~~g~~~~gks~~~~~~~~~~~~~~i~r~~~~~  259 (369)
                      =|+-+.|.+||||||+++-+ ...||..++-|.+..
T Consensus         4 ~IIgitG~~gSGKstva~~l-~~~g~~~~~~D~~~~   38 (191)
T d1uf9a_           4 IIIGITGNIGSGKSTVAALL-RSWGYPVLDLDALAA   38 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHH-HHTTCCEEEHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHH-HHCCCeEEEccHHHH
Confidence            34447899999999998754 567887777666544

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.27  E-value=0.84  Score=35.92  Aligned_cols=20  Identities=40%  Similarity=0.777  Sum_probs=17.3

Q ss_pred             EEEEcCCCCCcchhhhhccC
Q psy4598         226 LIMIGSQGSGKSSFVSTYLK  245 (369)
Q Consensus       226 ~v~~g~~~~gks~~~~~~~~  245 (369)
                      ++++|.+++|||++..+++.
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            46889999999999998763

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.72  E-value=0.75  Score=35.89  Aligned_cols=20  Identities=30%  Similarity=0.768  Sum_probs=17.4

Q ss_pred             EEEEcCCCCCcchhhhhccC
Q psy4598         226 LIMIGSQGSGKSSFVSTYLK  245 (369)
Q Consensus       226 ~v~~g~~~~gks~~~~~~~~  245 (369)
                      ++++|.+++|||++.++++.
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            46789999999999998763

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.64  E-value=0.15  Score=41.40  Aligned_cols=21  Identities=29%  Similarity=0.502  Sum_probs=18.0

Q ss_pred             eEEEEEcCCCCCcchhhhhcc
Q psy4598         224 QVLIMIGSQGSGKSSFVSTYL  244 (369)
Q Consensus       224 ~i~v~~g~~~~gks~~~~~~~  244 (369)
                      .++|++|++|+||||+++.+.
T Consensus         3 ~iivl~GpsG~GK~tl~~~L~   23 (182)
T d1znwa1           3 RVVVLSGPSAVGKSTVVRCLR   23 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            478899999999999988653

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=84.62  E-value=0.15  Score=39.55  Aligned_cols=20  Identities=20%  Similarity=0.494  Sum_probs=17.3

Q ss_pred             EEEEcCCCCCcchhhhhccC
Q psy4598         226 LIMIGSQGSGKSSFVSTYLK  245 (369)
Q Consensus       226 ~v~~g~~~~gks~~~~~~~~  245 (369)
                      ++++|.+++||||+.+++..
T Consensus         3 ivlvG~~~vGKSsLi~~l~~   22 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKL   22 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            46899999999999998763

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=84.57  E-value=0.19  Score=43.57  Aligned_cols=23  Identities=22%  Similarity=0.486  Sum_probs=18.6

Q ss_pred             ceEEEEEcCCCCCcchhhhhccC
Q psy4598         223 KQVLIMIGSQGSGKSSFVSTYLK  245 (369)
Q Consensus       223 ~~i~v~~g~~~~gks~~~~~~~~  245 (369)
                      +.-++++|+||+|||++++....
T Consensus        45 ~~~iLL~GppGtGKT~la~~iA~   67 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLAKAIAG   67 (256)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHH
T ss_pred             CCeEEeeCCCCCCccHHHHHHHH
Confidence            34567999999999999996553

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.51  E-value=0.14  Score=40.54  Aligned_cols=19  Identities=21%  Similarity=0.543  Sum_probs=16.3

Q ss_pred             EEEEcCCCCCcchhhhhcc
Q psy4598         226 LIMIGSQGSGKSSFVSTYL  244 (369)
Q Consensus       226 ~v~~g~~~~gks~~~~~~~  244 (369)
                      +++.|+||+||||+++.+.
T Consensus         4 v~ItG~~GtGKTtl~~~i~   22 (189)
T d2i3ba1           4 VFLTGPPGVGKTTLIHKAS   22 (189)
T ss_dssp             EEEESCCSSCHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            5678999999999998654

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=84.31  E-value=0.26  Score=41.60  Aligned_cols=26  Identities=23%  Similarity=0.601  Sum_probs=21.3

Q ss_pred             CCCCCceEEEEEcCCCCCcchhhhhc
Q psy4598         218 IPHDKKQVLIMIGSQGSGKSSFVSTY  243 (369)
Q Consensus       218 ~~~~~~~i~v~~g~~~~gks~~~~~~  243 (369)
                      +..+++.++++||++|+||||-+-++
T Consensus         6 ~~~~~p~vi~lvGptGvGKTTTiAKL   31 (213)
T d1vmaa2           6 VPPEPPFVIMVVGVNGTGKTTSCGKL   31 (213)
T ss_dssp             CCSSSCEEEEEECCTTSSHHHHHHHH
T ss_pred             CCCCCCEEEEEECCCCCCHHHHHHHH
Confidence            44677789999999999999986654

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=84.09  E-value=0.22  Score=45.81  Aligned_cols=20  Identities=30%  Similarity=0.544  Sum_probs=17.0

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      ++++|.+|||||++.+.+..
T Consensus        53 ~~I~G~tGsGKT~~l~~li~   72 (433)
T d1e9ra_          53 LLVNGATGTGKSVLLRELAY   72 (433)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHH
Confidence            68999999999998876654

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=84.05  E-value=1.6  Score=35.14  Aligned_cols=20  Identities=20%  Similarity=0.395  Sum_probs=17.9

Q ss_pred             EEEEcCCCCcHHHHHHHHhc
Q psy4598         275 LIMIGSQGSGKSSFVSTYLK  294 (369)
Q Consensus       275 Ill~G~pGSGKSTla~~L~~  294 (369)
                      |.+.|...+|||||..+|..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHT
T ss_pred             EEEEeccCCcHHHHHHHHHh
Confidence            57899999999999999963

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.79  E-value=0.97  Score=35.50  Aligned_cols=20  Identities=20%  Similarity=0.677  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCcchhhhhccC
Q psy4598         226 LIMIGSQGSGKSSFVSTYLK  245 (369)
Q Consensus       226 ~v~~g~~~~gks~~~~~~~~  245 (369)
                      ++++|.+++|||++.++++.
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            56899999999999998764

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=82.96  E-value=0.18  Score=39.32  Aligned_cols=20  Identities=20%  Similarity=0.571  Sum_probs=17.4

Q ss_pred             EEEEcCCCCCcchhhhhccC
Q psy4598         226 LIMIGSQGSGKSSFVSTYLK  245 (369)
Q Consensus       226 ~v~~g~~~~gks~~~~~~~~  245 (369)
                      ++++|.+++||||+.+++..
T Consensus         8 I~ivG~~~vGKSSLi~~~~~   27 (169)
T d1upta_           8 ILILGLDGAGKTTILYRLQV   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            56899999999999998764

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=82.45  E-value=1.1  Score=39.45  Aligned_cols=22  Identities=9%  Similarity=0.261  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCcHHHHHHHHhcc
Q psy4598         274 VLIMIGSQGSGKSSFVSTYLKP  295 (369)
Q Consensus       274 lIll~G~pGSGKSTla~~L~~~  295 (369)
                      =+.+.|++|+|||+++..+++.
T Consensus        45 r~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          45 RGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHH
T ss_pred             eeeEeCCCCCCHHHHHHHHHHH
Confidence            3588999999999999999874

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=82.08  E-value=0.32  Score=40.91  Aligned_cols=93  Identities=14%  Similarity=0.174  Sum_probs=50.8

Q ss_pred             CCCCceEEEEEcCCCCCcchhhhhcc---CCC--cccccccccccchhhhhhhccccccEEEEEEcCCCCcHHHHHHHHh
Q psy4598         219 PHDKKQVLIMIGSQGSGKSSFVSTYL---KPL--NYTTVNRDTLGSWQKCVSVMKAALDSVLIMIGSQGSGKSSFVSTYL  293 (369)
Q Consensus       219 ~~~~~~i~v~~g~~~~gks~~~~~~~---~~~--~~~~i~r~~~~~~~~~~~~~~~~~~~lIll~G~pGSGKSTla~~L~  293 (369)
                      ..+.+.|+++||++|+||||.+-++.   ...  ....|+-|+.|.                        |=.--.+.++
T Consensus         5 ~~~~p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~lit~Dt~R~------------------------gA~eQL~~~a   60 (211)
T d2qy9a2           5 EGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRA------------------------AAVEQLQVWG   60 (211)
T ss_dssp             CSCTTEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEECCCTTCH------------------------HHHHHHHHHH
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEecccccc------------------------cchhhhhhhh
Confidence            35667899999999999999877542   111  123344444443                        2233345556


Q ss_pred             ccCCcEEEeCCcchhHHHHHHH-HHHHHhCC-CcEEEeCCCCCH
Q psy4598         294 KPLNYTTVNRDTLGSWQKCVSV-MKAALDSG-LSVVVDNTNPDK  335 (369)
Q Consensus       294 ~~~~~~~i~~D~~~~~~~~~~~-~~~~l~~g-~~vIiD~tn~~~  335 (369)
                      +.+++.+...+.-......... ...+...+ ..|+||.....+
T Consensus        61 ~~l~v~~~~~~~~~d~~~~l~~~~~~a~~~~~d~ilIDTaGr~~  104 (211)
T d2qy9a2          61 QRNNIPVIAQHTGADSASVIFDAIQAAKARNIDVLIADTAGRLQ  104 (211)
T ss_dssp             HHTTCCEECCSTTCCHHHHHHHHHHHHHHTTCSEEEECCCCCGG
T ss_pred             hhcCCcccccccCCCHHHHHHHHHHHHHHcCCCEEEeccCCCcc
Confidence            6677766655443333333322 22232333 356678776433

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=82.07  E-value=0.32  Score=43.41  Aligned_cols=17  Identities=29%  Similarity=0.706  Sum_probs=14.8

Q ss_pred             EEEEEcCCCCcHHHHHH
Q psy4598         274 VLIMIGSQGSGKSSFVS  290 (369)
Q Consensus       274 lIll~G~pGSGKSTla~  290 (369)
                      +-++-|++|+|||||+.
T Consensus        16 ~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          16 VAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             EEEEECSTTSSHHHHHC
T ss_pred             EEEEEccCCCCccccee
Confidence            45899999999999884

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=81.92  E-value=0.14  Score=38.69  Aligned_cols=18  Identities=17%  Similarity=0.139  Sum_probs=14.5

Q ss_pred             EEEEEEcCCCCcHHHHHH
Q psy4598         273 SVLIMIGSQGSGKSSFVS  290 (369)
Q Consensus       273 ~lIll~G~pGSGKSTla~  290 (369)
                      ..++|++++|||||..+-
T Consensus         8 ~~~il~~~tGsGKT~~~~   25 (140)
T d1yksa1           8 MTTVLDFHPGAGKTRRFL   25 (140)
T ss_dssp             CEEEECCCTTSSTTTTHH
T ss_pred             CcEEEEcCCCCChhHHHH
Confidence            356899999999996663

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=81.72  E-value=0.22  Score=39.42  Aligned_cols=24  Identities=17%  Similarity=0.468  Sum_probs=19.1

Q ss_pred             CCceEEEEEcCCCCCcchhhhhccC
Q psy4598         221 DKKQVLIMIGSQGSGKSSFVSTYLK  245 (369)
Q Consensus       221 ~~~~i~v~~g~~~~gks~~~~~~~~  245 (369)
                      ++.. ++++|.+++||||+.+++..
T Consensus        12 k~~k-I~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          12 KTGK-LVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             CCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred             CCCE-EEEECCCCCCHHHHHHHHhC
Confidence            3344 56899999999999998764

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.64  E-value=0.3  Score=39.79  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=19.1

Q ss_pred             eEEEEEcCCCCCcchhhhhccCC
Q psy4598         224 QVLIMIGSQGSGKSSFVSTYLKP  246 (369)
Q Consensus       224 ~i~v~~g~~~~gks~~~~~~~~~  246 (369)
                      ..++++|.|++||||+.+++...
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35578999999999999988643

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.45  E-value=0.23  Score=39.36  Aligned_cols=20  Identities=25%  Similarity=0.586  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCCcchhhhhcc
Q psy4598         225 VLIMIGSQGSGKSSFVSTYL  244 (369)
Q Consensus       225 i~v~~g~~~~gks~~~~~~~  244 (369)
                      |+-.+|++||||||+.++++
T Consensus         3 ii~I~G~~gSGKTTli~~l~   22 (165)
T d1xjca_           3 VWQVVGYKHSGKTTLMEKWV   22 (165)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            55678999999999999764

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.17  E-value=0.23  Score=38.30  Aligned_cols=20  Identities=20%  Similarity=0.544  Sum_probs=17.5

Q ss_pred             EEEEcCCCCCcchhhhhccC
Q psy4598         226 LIMIGSQGSGKSSFVSTYLK  245 (369)
Q Consensus       226 ~v~~g~~~~gks~~~~~~~~  245 (369)
                      ++++|.|++||||+.+++..
T Consensus         3 I~liG~~nvGKSSLln~l~~   22 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKN   22 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            56899999999999998764

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=80.92  E-value=0.36  Score=40.42  Aligned_cols=24  Identities=25%  Similarity=0.534  Sum_probs=19.8

Q ss_pred             CCCceEEEEEcCCCCCcchhhhhc
Q psy4598         220 HDKKQVLIMIGSQGSGKSSFVSTY  243 (369)
Q Consensus       220 ~~~~~i~v~~g~~~~gks~~~~~~  243 (369)
                      .++..|++++|++|+||||.+-++
T Consensus         7 ~~~~~vi~lvGp~GvGKTTTiaKL   30 (207)
T d1ls1a2           7 LKDRNLWFLVGLQGSGKTTTAAKL   30 (207)
T ss_dssp             CCSSEEEEEECCTTTTHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHH
Confidence            455678899999999999987754

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.84  E-value=0.83  Score=41.12  Aligned_cols=40  Identities=18%  Similarity=0.172  Sum_probs=26.2

Q ss_pred             hCCCcEEEeCCCCCHHHHHHHHHHHHhcCCeEEEEEEeCC
Q psy4598         321 DSGLSVVVDNTNPDKESRHRYIEAAKQHGVRCIAVHMNIS  360 (369)
Q Consensus       321 ~~g~~vIiD~tn~~~~~r~~~~~la~~~~~~v~~v~l~~~  360 (369)
                      ..|-.+|||+...-..+-...++.|.+.+.+..++.=..+
T Consensus       120 ~D~allVVda~eGv~~qT~~~~~~a~~~~~p~i~viNKiD  159 (341)
T d1n0ua2         120 TDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVD  159 (341)
T ss_dssp             CSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHH
T ss_pred             cCceEEEEecccCcchhHHHHHHHHHHcCCCeEEEEECcc
Confidence            3456788998875444445556668888988766653333

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=80.56  E-value=0.25  Score=39.10  Aligned_cols=20  Identities=20%  Similarity=0.561  Sum_probs=17.0

Q ss_pred             EEEEcCCCCCcchhhhhccC
Q psy4598         226 LIMIGSQGSGKSSFVSTYLK  245 (369)
Q Consensus       226 ~v~~g~~~~gks~~~~~~~~  245 (369)
                      ++++|.+++||||+..++..
T Consensus        18 I~vvG~~~~GKSsLi~rl~~   37 (177)
T d1zj6a1          18 VIIVGLDNAGKTTILYQFSM   37 (177)
T ss_dssp             EEEEESTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhc
Confidence            34789999999999998764

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=80.10  E-value=0.4  Score=42.89  Aligned_cols=17  Identities=29%  Similarity=0.696  Sum_probs=14.8

Q ss_pred             EEEEEcCCCCcHHHHHH
Q psy4598         274 VLIMIGSQGSGKSSFVS  290 (369)
Q Consensus       274 lIll~G~pGSGKSTla~  290 (369)
                      +-++-|++|+|||||+.
T Consensus        16 ~alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          16 VTVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             EEEEECCTTSSHHHHHC
T ss_pred             EEEEEccCCCCccccee
Confidence            44799999999999993

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=80.04  E-value=0.28  Score=38.56  Aligned_cols=20  Identities=25%  Similarity=0.627  Sum_probs=17.2

Q ss_pred             EEEEcCCCCCcchhhhhccC
Q psy4598         226 LIMIGSQGSGKSSFVSTYLK  245 (369)
Q Consensus       226 ~v~~g~~~~gks~~~~~~~~  245 (369)
                      ++++|.+++||||+.+++..
T Consensus         5 i~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           5 LLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHTT
T ss_pred             EEEECCCCCCHHHHHHHHcC
Confidence            45789999999999998753